/usr/local/bioinformatics/quast-4.5/quast.py -t 24 /home/owl/scaphapoda/Sean/Oly_Canu_Output/oly_pacbio_.contigs.fasta /home/owl/Athaliana/201709_oly_pacbio_assembly_minimap_asm_racon/20170918_oly_pacbio_racon1_consensus.fasta

Version: 4.5, 15ca3b9

System information:
  OS: Linux-4.4.0-96-generic-x86_64-with-debian-8.9 (linux_64)
  Python version: 2.7.13
  CPUs number: 24

Started: 2017-10-03 20:01:44

Logging to /home/data/quast_results/results_2017_10_03_20_01_42/quast.log

CWD: /home/data
Main parameters: 
  Threads: 24, minimum contig length: 500, ambiguity: one, threshold for extensive misassembly size: 1000

Contigs:
  Pre-processing...
  1  /home/owl/scaphapoda/Sean/Oly_Canu_Output/oly_pacbio_.contigs.fasta ==> oly_pacbio_.contigs
  2  /home/owl/Athaliana/201709_oly_pacbio_assembly_minimap_asm_racon/20170918_oly_pacbio_racon1_consensus.fasta ==> 20170918_oly_pacbio_racon1_consensus

2017-10-03 20:01:50
Running Basic statistics processor...
  Contig files: 
    1  oly_pacbio_.contigs
    2  20170918_oly_pacbio_racon1_consensus
  Calculating N50 and L50...
    1  oly_pacbio_.contigs, N50 = 14117, L50 = 1230, Total length = 46288879, GC % = 36.45, # N's per 100 kbp =  0.00
    2  20170918_oly_pacbio_racon1_consensus, N50 = 13763, L50 = 896, Total length = 33483762, GC % = 36.43, # N's per 100 kbp =  0.00
  Drawing Nx plot...
    saved to /home/data/quast_results/results_2017_10_03_20_01_42/basic_stats/Nx_plot.pdf
  Drawing cumulative plot...
    saved to /home/data/quast_results/results_2017_10_03_20_01_42/basic_stats/cumulative_plot.pdf
  Drawing GC content plot...
    saved to /home/data/quast_results/results_2017_10_03_20_01_42/basic_stats/GC_content_plot.pdf
  Drawing oly_pacbio_.contigs GC content plot...
    saved to /home/data/quast_results/results_2017_10_03_20_01_42/basic_stats/oly_pacbio_.contigs_GC_content_plot.pdf
  Drawing 20170918_oly_pacbio_racon1_consensus GC content plot...
    saved to /home/data/quast_results/results_2017_10_03_20_01_42/basic_stats/20170918_oly_pacbio_racon1_consensus_GC_content_plot.pdf
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding option to enable it.

2017-10-03 20:01:57
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
  1 of 2: Creating Icarus viewers...
  2 of 2: Creating PDF with all tables and plots...
Done

2017-10-03 20:02:00
RESULTS:
  Text versions of total report are saved to /home/data/quast_results/results_2017_10_03_20_01_42/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /home/data/quast_results/results_2017_10_03_20_01_42/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) saved to /home/data/quast_results/results_2017_10_03_20_01_42/report.html
  PDF version (tables and plots) is saved to /home/data/quast_results/results_2017_10_03_20_01_42/report.pdf
  Icarus (contig browser) is saved to /home/data/quast_results/results_2017_10_03_20_01_42/icarus.html
  Log saved to /home/data/quast_results/results_2017_10_03_20_01_42/quast.log

Finished: 2017-10-03 20:02:00
Elapsed time: 0:00:15.650549
NOTICEs: 1; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!