Running job 6 based on command line options. Fetch blocks/000012.dat Fetch blocks/000013.dat Fetch blocks/000014.dat Fetch blocks/000015.dat Fetch blocks/000016.dat Fetch blocks/000017.dat Fetch blocks/000018.dat Fetch blocks/000019.dat Fetch blocks/000020.dat Running block 000002 in query 000006 Running with these settings: --filter-threshold = 5.0E-6 --help = false --max-shift = 0.2 --min-olap-length = 500 --min-store-length = 0 --no-rc = false --no-self = true --no-tf = false --num-hashes = 768 --num-min-matches = 2 --num-threads = 12 --ordered-kmer-size = 12 --ordered-sketch-size = 1536 --repeat-idf-scale = 10.0 --repeat-weight = 0.9 --settings = 0 --store-full-id = false --supress-noise = 0 --threshold = 0.73 --version = false -f = -h = false -k = 16 -p = -q = queries/000006 -s = ./blocks/000002.dat Processing files for storage in reverse index... Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Current # sequences loaded and processed from file: 50000... Current # sequences loaded and processed from file: 55000... Current # sequences loaded and processed from file: 60000... Current # sequences loaded and processed from file: 65000... Current # sequences loaded and processed from file: 70000... Current # sequences loaded and processed from file: 75000... Current # sequences loaded and processed from file: 80000... Current # sequences loaded and processed from file: 85000... Current # sequences loaded and processed from file: 90000... Current # sequences loaded and processed from file: 95000... Current # sequences stored: 5000... Current # sequences stored: 10000... Current # sequences stored: 15000... Current # sequences stored: 20000... Current # sequences stored: 25000... Current # sequences stored: 30000... Current # sequences stored: 35000... Current # sequences stored: 40000... Current # sequences stored: 45000... Current # sequences stored: 50000... Current # sequences stored: 55000... Current # sequences stored: 60000... Current # sequences stored: 65000... Current # sequences stored: 70000... Current # sequences stored: 75000... Current # sequences stored: 80000... Current # sequences stored: 85000... Current # sequences stored: 90000... Current # sequences stored: 95000... Stored 96000 sequences in the index. Processed 96000 unique sequences (fwd and rev). Time (s) to read and hash from file: 98.209215884 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000012.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 191.14980856800003 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000013.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 167.835010444 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000014.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 169.15151531200002 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000015.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 159.166247515 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000016.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 159.235433344 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000017.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 190.728018867 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000018.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 188.77314766700002 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000019.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 179.383693486 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000020.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 175.88801737100002 Total scoring time (s): 1581.3332550060002 Total time (s): 1679.5425709350002 MinHash search time (s): 309.966924006 Total matches found: 58830160 Average number of matches per lookup: 136.18092592592592 Average number of table elements processed per lookup: 1758.0263032407408 Average number of table elements processed per match: 12.909490013285703 Average % of hashed sequences hit per lookup: 1.441984273726852 Average % of hashed sequences hit that are matches: 9.837495023868092 Average % of hashed sequences fully compared that are matches: 54.95587624033852