Running job 62 based on command line options. Fetch blocks/000028.dat Fetch blocks/000029.dat Fetch blocks/000030.dat Fetch blocks/000031.dat Fetch blocks/000032.dat Fetch blocks/000033.dat Fetch blocks/000034.dat Fetch blocks/000035.dat Fetch blocks/000036.dat Running block 000018 in query 000062 Running with these settings: --filter-threshold = 5.0E-6 --help = false --max-shift = 0.2 --min-olap-length = 500 --min-store-length = 0 --no-rc = false --no-self = true --no-tf = false --num-hashes = 768 --num-min-matches = 2 --num-threads = 12 --ordered-kmer-size = 12 --ordered-sketch-size = 1536 --repeat-idf-scale = 10.0 --repeat-weight = 0.9 --settings = 0 --store-full-id = false --supress-noise = 0 --threshold = 0.73 --version = false -f = -h = false -k = 16 -p = -q = queries/000062 -s = ./blocks/000018.dat Processing files for storage in reverse index... Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Current # sequences loaded and processed from file: 50000... Current # sequences loaded and processed from file: 55000... Current # sequences loaded and processed from file: 60000... Current # sequences loaded and processed from file: 65000... Current # sequences loaded and processed from file: 70000... Current # sequences loaded and processed from file: 75000... Current # sequences loaded and processed from file: 80000... Current # sequences loaded and processed from file: 85000... Current # sequences loaded and processed from file: 90000... Current # sequences loaded and processed from file: 95000... Current # sequences stored: 5000... Current # sequences stored: 10000... Current # sequences stored: 15000... Current # sequences stored: 20000... Current # sequences stored: 25000... Current # sequences stored: 30000... Current # sequences stored: 35000... Current # sequences stored: 40000... Current # sequences stored: 45000... Current # sequences stored: 50000... Current # sequences stored: 55000... Current # sequences stored: 60000... Current # sequences stored: 65000... Current # sequences stored: 70000... Current # sequences stored: 75000... Current # sequences stored: 80000... Current # sequences stored: 85000... Current # sequences stored: 90000... Current # sequences stored: 95000... Stored 96000 sequences in the index. Processed 96000 unique sequences (fwd and rev). Time (s) to read and hash from file: 84.72988669700001 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000028.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 243.78940789700002 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000029.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 215.923092155 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000030.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 223.55298493100003 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000031.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 218.42729355 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000032.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 223.283840892 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000033.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 219.969575724 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000034.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 214.21021699300002 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000035.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 207.99809751 Opened fasta file /home/data/20171018_oly_pacbio_canu/correction/1-overlapper/blocks/000036.dat. Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Processed 48000 to sequences. Time (s) to score, hash to-file, and output: 209.35150894 Total scoring time (s): 1976.5274554330001 Total time (s): 2061.257475982 MinHash search time (s): 380.750408967 Total matches found: 75542978 Average number of matches per lookup: 174.86800462962964 Average number of table elements processed per lookup: 2057.1635162037037 Average number of table elements processed per match: 11.764093268867425 Average % of hashed sequences hit per lookup: 1.6507500868055556 Average % of hashed sequences hit that are matches: 11.034630435288523 Average % of hashed sequences fully compared that are matches: 56.8808718817754