Running job 21 based on command line options. Dumping reads from 960001 to 1008000 (inclusive). Starting mhap precompute. Running with these settings: --filter-threshold = 5.0E-6 --help = false --max-shift = 0.2 --min-olap-length = 500 --min-store-length = 0 --no-rc = false --no-self = false --no-tf = false --num-hashes = 768 --num-min-matches = 2 --num-threads = 12 --ordered-kmer-size = 12 --ordered-sketch-size = 1536 --repeat-idf-scale = 10.0 --repeat-weight = 0.9 --settings = 0 --store-full-id = false --supress-noise = 0 --threshold = 0.73 --version = false -f = ../../0-mercounts/20171018_oly_pacbio.ms16.frequentMers.ignore.gz -h = false -k = 16 -p = ./000021.input.fasta -q = . -s = Reading in filter file ../../0-mercounts/20171018_oly_pacbio.ms16.frequentMers.ignore.gz. Time (s) to read filter file: 0.16541782700000002 Read in k-mer filter for sizes: [16] Processing FASTA files for binary compression... Current # sequences loaded and processed from file: 5000... Current # sequences loaded and processed from file: 10000... Current # sequences loaded and processed from file: 15000... Current # sequences loaded and processed from file: 20000... Current # sequences loaded and processed from file: 25000... Current # sequences loaded and processed from file: 30000... Current # sequences loaded and processed from file: 35000... Current # sequences loaded and processed from file: 40000... Current # sequences loaded and processed from file: 45000... Current # sequences loaded and processed from file: 50000... Current # sequences loaded and processed from file: 55000... Current # sequences loaded and processed from file: 60000... Current # sequences loaded and processed from file: 65000... Current # sequences loaded and processed from file: 70000... Current # sequences loaded and processed from file: 75000... Current # sequences loaded and processed from file: 80000... Current # sequences loaded and processed from file: 85000... Current # sequences loaded and processed from file: 90000... Current # sequences loaded and processed from file: 95000... Processed 96000 sequences (fwd and rev). Read, hashed, and stored file ./000021.input.fasta to ./000021.input.dat. Time (s): 1767.443656529 Total time (s): 1767.44384943