Running job 11 based on command line options. Initializing. Opening gkpStore '../20171018_oly_pacbio.gkpStore'. Correcting reads 250001 to 275000. Reading 22282220 corrections from './red.red'. Correcting 112577073 bases with 16806894 indel adjustments. --Allocate 107 + 128 + 0 MB for bases, adjusts and reads. Corrected 111943799 bases with 175838 substitutions, 633277 deletions and 3 insertions. Loading overlaps. Read_Olaps()-- Loading 762593 overlaps from '../20171018_oly_pacbio.ovlStore' for reads 250001 to 275000 --Allocate 23 MB for overlaps. Read_Olaps()-- Loaded 762593 overlaps -- 382793 normal and 379800 innie. Sorting overlaps. Recomputing overlaps. --Allocate 8 MB for fseq and rseq. --Allocate 32 MB for fadj and radj. --Allocate 16 MB for pedWorkArea_t. -- Allocate 0 MB for Edit_Array pointers. 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723260 Recomputing overlaps - 3 - 722947 - 723260 -- Release bases, adjusts and reads. Olaps Fwd 382793 Olaps Rev 379800 Total: 762593 Failed: 12483 (both) Failed: 23775 (either) Failed: 23767 (match to end) Failed: 12491 (negative length) rhaFail 12430 rhaPass 376385 Sorting overlaps. Saving corrected error rates to file ./00011.oea.WORKING --Allocate 1 MB for output error rates. Bye.