optimize_initPlace()-- Failed to find overlaps for read 274333 in tig 2703 at 4985-7132 (first pass) optimize_initPlace()-- Second pass begins. optimize_initPlace()-- olap 0 a 274333 b 59373 hangs -4508 2774 optimize_initPlace()-- olap 1 a 274333 b 109695 hangs 0 2467 optimize_initPlace()-- olap 1 tig 2703 read 274333 (at 4985 7132) olap to read 109695 (at 9596 4989) - hangs 0 2467 - overlapping after optimize_initPlace()-- olap 2 a 274333 b 109696 hangs 227 5032 optimize_initPlace()-- olap 2 tig 2703 read 274333 (at 4985 7132) olap to read 109696 (at 5206 12162) - hangs 227 5032 - overlapping after optimize_initPlace()-- olap 3 a 274333 b 109697 hangs 344 5059 optimize_initPlace()-- olap 3 tig 2703 read 274333 (at 4985 7132) olap to read 109697 (at 12159 5328) - hangs 344 5059 - overlapping after optimize_initPlace()-- olap 4 a 274333 b 109698 hangs 0 4849 optimize_initPlace()-- olap 4 tig 2703 read 274333 (at 4985 7132) olap to read 109698 (at 4991 11984) - hangs 0 4849 - overlapping after optimize_initPlace()-- olap 5 a 274333 b 145292 hangs -5112 4789 optimize_initPlace()-- olap 6 a 274333 b 160327 hangs 47 2515 optimize_initPlace()-- olap 6 tig 2703 read 274333 (at 4985 7132) olap to read 160327 (at 9614 5044) - hangs 47 2515 - overlapping after optimize_initPlace()-- olap 7 a 274333 b 161731 hangs -7656 4766 optimize_initPlace()-- olap 8 a 274333 b 214356 hangs -1 467 optimize_initPlace()-- olap 8 tig 2703 read 274333 (at 4985 7132) olap to read 214356 (at 7597 4989) - hangs -1 467 - overlapping after optimize_initPlace()-- olap 9 a 274333 b 215948 hangs -5582 -857 optimize_initPlace()-- olap 10 a 274333 b 215949 hangs -4385 -874 optimize_initPlace()-- olap 11 a 274333 b 224465 hangs -3658 1157 optimize_initPlace()-- olap 12 a 274333 b 224466 hangs -3647 1155 optimize_initPlace()-- olap 13 a 274333 b 224467 hangs -3670 1160 optimize_initPlace()-- olap 14 a 274333 b 224468 hangs -3659 1156 optimize_initPlace()-- olap 15 a 274333 b 224469 hangs -3646 1150 optimize_initPlace()-- olap 16 a 274333 b 224470 hangs -3633 1148 optimize_initPlace()-- olap 17 a 274333 b 224471 hangs -3648 107 optimize_initPlace()-- olap 18 a 274333 b 229890 hangs 94 623 optimize_initPlace()-- olap 18 tig 2703 read 274333 (at 4985 7132) olap to read 229890 (at 7763 5079) - hangs 94 623 - overlapping after optimize_initPlace()-- olap 19 a 274333 b 274332 hangs 0 551 optimize_initPlace()-- olap 19 tig 2703 read 274333 (at 4985 7132) olap to read 274332 (at 7676 4988) - hangs 0 551 - overlapping after optimize_initPlace()-- olap 20 a 274333 b 325655 hangs 619 1524 optimize_initPlace()-- olap 20 tig 2703 read 274333 (at 4985 7132) olap to read 325655 (at 5607 8664) - hangs 619 1524 - overlapping after optimize_initPlace()-- olap 21 a 274333 b 357414 hangs 212 4692 optimize_initPlace()-- olap 22 a 274333 b 357415 hangs 212 4677 optimize_initPlace()-- olap 23 a 274333 b 375799 hangs 18 4555 optimize_initPlace()-- olap 24 a 274333 b 525772 hangs -182 8607 optimize_initPlace()-- olap 25 a 274333 b 602324 hangs 5 2615 optimize_initPlace()-- olap 25 tig 2703 read 274333 (at 4985 7132) olap to read 602324 (at 9748 5001) - hangs 5 2615 - overlapping after optimize_initPlace()-- olap 26 a 274333 b 602325 hangs 0 4914 optimize_initPlace()-- olap 27 a 274333 b 623414 hangs -3920 -867 optimize_initPlace()-- olap 28 a 274333 b 654578 hangs 12 2482 optimize_initPlace()-- olap 28 tig 2703 read 274333 (at 4985 7132) olap to read 654578 (at 9614 5004) - hangs 12 2482 - overlapping after optimize_initPlace()-- olap 29 a 274333 b 707096 hangs -7637 8976 optimize_initPlace()-- tig 2703 read 274333 initialized to position 4988.61 7087.61 SECONDPASS optimize_initPlace()-- Failed to find overlaps for read 41935 in tig 3276 at 11556-8558 (first pass) optimize_initPlace()-- Failed to find overlaps for read 41936 in tig 3276 at 8558-10807 (first pass) optimize_initPlace()-- Failed to find overlaps for read 680824 in tig 3276 at 11818-8559 (first pass) optimize_initPlace()-- Second pass begins. optimize_initPlace()-- olap 0 a 41935 b 13426 hangs -1270 -1662 optimize_initPlace()-- olap 1 a 41935 b 41934 hangs 745 -975 optimize_initPlace()-- olap 1 tig 3276 read 41935 (at 11556 8558) olap to read 41934 (at 9558 10816) - hangs 745 -975 - overlapping after optimize_initPlace()-- olap 2 a 41935 b 80920 hangs -1301 -2 optimize_initPlace()-- olap 3 a 41935 b 249592 hangs -1126 -704 optimize_initPlace()-- olap 4 a 41935 b 307295 hangs -2565 -803 optimize_initPlace()-- olap 5 a 41935 b 319049 hangs -3646 1 optimize_initPlace()-- olap 6 a 41935 b 319050 hangs 1075 -33 optimize_initPlace()-- olap 7 a 41935 b 330326 hangs -1481 -1855 optimize_initPlace()-- olap 7 tig 3276 read 41935 (at 11556 8558) olap to read 330326 (at 10435 13030) - hangs -1481 -1855 - overlapping after optimize_initPlace()-- olap 8 a 41935 b 330327 hangs -1384 0 optimize_initPlace()-- olap 8 tig 3276 read 41935 (at 11556 8558) olap to read 330327 (at 12949 8561) - hangs -1384 0 - overlapping after optimize_initPlace()-- olap 9 a 41935 b 330349 hangs -3426 -1485 optimize_initPlace()-- olap 10 a 41935 b 354032 hangs -623 0 optimize_initPlace()-- olap 11 a 41935 b 413175 hangs -467 -714 optimize_initPlace()-- olap 11 tig 3276 read 41935 (at 11556 8558) olap to read 413175 (at 9289 12026) - hangs -467 -714 - overlapping after optimize_initPlace()-- olap 12 a 41935 b 457233 hangs -1580 -7 optimize_initPlace()-- olap 12 tig 3276 read 41935 (at 11556 8558) olap to read 457233 (at 8563 13127) - hangs -1580 -7 - overlapping after optimize_initPlace()-- olap 13 a 41935 b 557421 hangs -1281 2 optimize_initPlace()-- olap 14 a 41935 b 573784 hangs 138 3434 optimize_initPlace()-- olap 15 a 41935 b 573785 hangs 138 3442 optimize_initPlace()-- olap 16 a 41935 b 573786 hangs 1202 3412 optimize_initPlace()-- olap 17 a 41935 b 580637 hangs -2546 -782 optimize_initPlace()-- olap 18 a 41935 b 580638 hangs -2531 -1644 optimize_initPlace()-- olap 19 a 41935 b 593431 hangs 132 -1045 optimize_initPlace()-- olap 19 tig 3276 read 41935 (at 11556 8558) olap to read 593431 (at 9578 11435) - hangs 132 -1045 - overlapping after optimize_initPlace()-- olap 20 a 41935 b 660871 hangs -4684 3028 optimize_initPlace()-- olap 21 a 41935 b 660872 hangs -1289 -1007 optimize_initPlace()-- olap 22 a 41935 b 668233 hangs 1079 -222 optimize_initPlace()-- olap 23 a 41935 b 675148 hangs 1075 -22 optimize_initPlace()-- olap 23 tig 3276 read 41935 (at 11556 8558) olap to read 675148 (at 10470 8580) - hangs 1075 -22 - overlapping after optimize_initPlace()-- tig 3276 read 41935 initialized to position 8523.79 11487.79 SECONDPASS optimize_initPlace()-- Second pass begins. optimize_initPlace()-- olap 0 a 41936 b 41934 hangs 966 0 optimize_initPlace()-- olap 0 tig 3276 read 41936 (at 8558 10807) olap to read 41934 (at 9558 10816) - hangs 966 0 - overlapping after optimize_initPlace()-- olap 1 a 41936 b 330327 hangs 0 2133 optimize_initPlace()-- olap 1 tig 3276 read 41936 (at 8558 10807) olap to read 330327 (at 12949 8561) - hangs 0 2133 - overlapping after optimize_initPlace()-- olap 2 a 41936 b 354032 hangs 0 1375 optimize_initPlace()-- olap 3 a 41936 b 457233 hangs 8 2329 optimize_initPlace()-- olap 3 tig 3276 read 41936 (at 8558 10807) olap to read 457233 (at 8563 13127) - hangs 8 2329 - overlapping after optimize_initPlace()-- olap 4 a 41936 b 580637 hangs 782 3297 optimize_initPlace()-- olap 5 a 41936 b 593431 hangs 1033 622 optimize_initPlace()-- olap 5 tig 3276 read 41936 (at 8558 10807) olap to read 593431 (at 9578 11435) - hangs 1033 622 - overlapping after optimize_initPlace()-- olap 6 a 41936 b 660871 hangs -3027 5417 optimize_initPlace()-- olap 7 a 41936 b 660872 hangs 998 2023 optimize_initPlace()-- tig 3276 read 41936 initialized to position 8521.92 10725.92 SECONDPASS optimize_initPlace()-- Second pass begins. optimize_initPlace()-- olap 0 a 680824 b 13426 hangs -1008 -1681 optimize_initPlace()-- olap 1 a 680824 b 80920 hangs -1038 -1 optimize_initPlace()-- olap 2 a 680824 b 249592 hangs -860 -723 optimize_initPlace()-- olap 3 a 680824 b 319049 hangs -3389 2 optimize_initPlace()-- olap 4 a 680824 b 319050 hangs 1330 -32 optimize_initPlace()-- olap 5 a 680824 b 330327 hangs -1122 1 optimize_initPlace()-- olap 5 tig 3276 read 680824 (at 11818 8559) olap to read 330327 (at 12949 8561) - hangs -1122 1 - overlapping after optimize_initPlace()-- olap 6 a 680824 b 330349 hangs -3168 -1502 optimize_initPlace()-- olap 7 a 680824 b 354032 hangs -360 1 optimize_initPlace()-- olap 8 a 680824 b 457233 hangs -1318 -6 optimize_initPlace()-- olap 8 tig 3276 read 680824 (at 11818 8559) olap to read 457233 (at 8563 13127) - hangs -1318 -6 - overlapping after optimize_initPlace()-- olap 9 a 680824 b 557421 hangs -1018 3 optimize_initPlace()-- olap 10 a 680824 b 573784 hangs 401 3435 optimize_initPlace()-- olap 11 a 680824 b 573785 hangs 401 3443 optimize_initPlace()-- olap 12 a 680824 b 573786 hangs 1461 3413 optimize_initPlace()-- olap 13 a 680824 b 580637 hangs -2283 -803 optimize_initPlace()-- olap 14 a 680824 b 593431 hangs 395 -1068 optimize_initPlace()-- olap 14 tig 3276 read 680824 (at 11818 8559) olap to read 593431 (at 9578 11435) - hangs 395 -1068 - overlapping after optimize_initPlace()-- olap 15 a 680824 b 660871 hangs -4421 3029 optimize_initPlace()-- olap 16 a 680824 b 660872 hangs -1026 -1030 optimize_initPlace()-- olap 17 a 680824 b 721123 hangs -1033 -1943 optimize_initPlace()-- tig 3276 read 680824 initialized to position 8503.49 11748.49 SECONDPASS optimize_initPlace()-- Failed to find overlaps for read 309586 in tig 3426 at 15709-23041 (first pass) optimize_initPlace()-- Second pass begins. optimize_initPlace()-- olap 0 a 309586 b 309588 hangs -100 -157 optimize_initPlace()-- olap 1 a 309586 b 309589 hangs 0 12 optimize_initPlace()-- olap 1 tig 3426 read 309586 (at 15709 23041) olap to read 309589 (at 23050 15781) - hangs 0 12 - overlapping after optimize_initPlace()-- olap 2 a 309586 b 309590 hangs -101 -163 optimize_initPlace()-- olap 3 a 309586 b 359883 hangs 4540 5742 optimize_initPlace()-- olap 4 a 309586 b 359884 hangs 4524 5777 optimize_initPlace()-- olap 5 a 309586 b 359885 hangs 4498 5777 optimize_initPlace()-- olap 6 a 309586 b 359886 hangs 4504 5744 optimize_initPlace()-- olap 7 a 309586 b 631458 hangs 4099 5376 optimize_initPlace()-- olap 7 tig 3426 read 309586 (at 15709 23041) olap to read 631458 (at 19789 28405) - hangs 4099 5376 - overlapping after optimize_initPlace()-- olap 8 a 309586 b 631459 hangs 4089 5339 optimize_initPlace()-- olap 8 tig 3426 read 309586 (at 15709 23041) olap to read 631459 (at 28383 19782) - hangs 4089 5339 - overlapping after optimize_initPlace()-- olap 9 a 309586 b 631460 hangs 4106 5384 optimize_initPlace()-- olap 9 tig 3426 read 309586 (at 15709 23041) olap to read 631460 (at 19796 28426) - hangs 4106 5384 - overlapping after optimize_initPlace()-- olap 10 a 309586 b 631461 hangs 4255 5349 optimize_initPlace()-- olap 10 tig 3426 read 309586 (at 15709 23041) olap to read 631461 (at 28405 19944) - hangs 4255 5349 - overlapping after optimize_initPlace()-- olap 11 a 309586 b 631462 hangs 4080 4907 optimize_initPlace()-- olap 11 tig 3426 read 309586 (at 15709 23041) olap to read 631462 (at 19775 27962) - hangs 4080 4907 - overlapping after optimize_initPlace()-- olap 12 a 309586 b 683687 hangs 4853 3962 optimize_initPlace()-- tig 3426 read 309586 initialized to position 15681.53 23066.53 SECONDPASS