repeatDetect()-- working on 113047 tigs, with 12 threads. Annotating repeats in reads for tig 1/113047. Annotated with 1497 overlaps. Scan reads to discard spanned repeats. discard region 48257:47451 - contained in read 120595 39655- 48381 thickest edges to the repeat regions: saved region 1610:7959 - closest read 144564 ( +131) 1479:11215 ( +3256) (contained) saved region 1610:7959 - closest read 156067 ( +0) 1610:8439 ( +480) (contained) saved region 1610:7959 - closest 5' read 144564 ( +131) 1479:11215 ( +3256) saved region 1610:7959 - closest 3' read 144564 ( +131) 1479:11215 ( +3256) saved region 8425:46549 - closest 5' read 520999 ( +2201) 6224:20783 (-25766) saved region 8425:46549 - closest 3' read 458296 (-28864) 37289:46549 ( +0) saved region 50888:61885 - closest 5' read 574036 ( +701) 50187:58905 ( -2980) saved region 50888:61885 - closest 3' read 570851 ( -4511) 55399:61885 ( +0) search for confused edges: tig 1 read 156069 pos 0-7011 IS confused by 5' edge to read 334852 - best edge read 540785 len 1632 erate 0.0479 score 1553.83 - alt edge len 789 erate 0.0635 score 738.90 - absdiff 814.93 percdiff 71.0882 tig 1 read 156069 pos 0-7011 IS confused by 5' edge to read 596938 - best edge read 540785 len 1632 erate 0.0479 score 1553.83 - alt edge len 512 erate 0.0653 score 478.57 - absdiff 1075.26 percdiff 105.8123 tig 1 read 156069 pos 0-7011 IS confused by 5' edge to read 658011 - best edge read 540785 len 1632 erate 0.0479 score 1553.83 - alt edge len 680 erate 0.0457 score 648.92 - absdiff 904.90 percdiff 82.1612 tig 1 read 433814 pos 5259-19684 NOT confused by 5' edge to read 313926 - best edge read 470923 len 5805 erate 0.0512 score 5507.78 - alt edge len 1350 erate 0.0539 score 1277.23 - absdiff 4230.55 percdiff 124.7026 tig 1 read 470923 pos 12550-19384 NOT confused by 5' edge to read 313926 - best edge read 254965 len 6600 erate 0.0666 score 6160.44 - alt edge len 1034 erate 0.0516 score 980.65 - absdiff 5179.79 percdiff 145.0702 tig 1 read 470923 pos 12550-19384 NOT confused by 5' edge to read 570851 - best edge read 254965 len 6600 erate 0.0666 score 6160.44 - alt edge len 1045 erate 0.0412 score 1001.95 - absdiff 5158.49 percdiff 144.0440 tig 1 read 254965 pos 12792-20078 IS confused by 3' edge to read 269147 - best edge read 470923 len 6482 erate 0.0666 score 6050.30 - alt edge len 4610 erate 0.0505 score 4377.19 - absdiff 1673.10 percdiff 32.0902 tig 1 read 254965 pos 12792-20078 NOT confused by 5' edge to read 313926 - best edge read 643973 len 5868 erate 0.0598 score 5517.09 - alt edge len 1680 erate 0.0352 score 1620.86 - absdiff 3896.23 percdiff 109.1693 tig 1 read 254965 pos 12792-20078 NOT confused by 5' edge to read 570851 - best edge read 643973 len 5868 erate 0.0598 score 5517.09 - alt edge len 2771 erate 0.0231 score 2706.99 - absdiff 2810.10 percdiff 68.3384 tig 1 read 643973 pos 14048-21984 NOT confused by 3' edge to read 269147 - best edge read 254965 len 6034 erate 0.0598 score 5673.17 - alt edge len 3336 erate 0.0348 score 3219.91 - absdiff 2453.26 percdiff 55.1724 tig 1 read 643973 pos 14048-21984 NOT confused by 3' edge to read 415023 - best edge read 254965 len 6034 erate 0.0598 score 5673.17 - alt edge len 764 erate 0.0615 score 717.01 - absdiff 4956.15 percdiff 155.1178 tig 1 read 643973 pos 14048-21984 NOT confused by 5' edge to read 570851 - best edge read 636914 len 6948 erate 0.0328 score 6720.11 - alt edge len 2141 erate 0.0366 score 2062.64 - absdiff 4657.47 percdiff 106.0595 tig 1 read 636914 pos 14293-22382 NOT confused by 3' edge to read 269147 - best edge read 643973 len 6981 erate 0.0328 score 6752.02 - alt edge len 2553 erate 0.0554 score 2411.56 - absdiff 4340.46 percdiff 94.7328 tig 1 read 193760 pos 14526-21553 NOT confused by 3' edge to read 207090 - best edge read 193758 len 6838 erate 0.0269 score 6654.06 - alt edge len 761 erate 0.0599 score 715.42 - absdiff 5938.64 percdiff 161.1687 tig 1 read 193760 pos 14526-21553 NOT confused by 3' edge to read 458296 - best edge read 193758 len 6838 erate 0.0269 score 6654.06 - alt edge len 841 erate 0.0693 score 782.72 - absdiff 5871.34 percdiff 157.9001 tig 1 read 193760 pos 14526-21553 NOT confused by 3' edge to read 570851 - best edge read 193758 len 6838 erate 0.0269 score 6654.06 - alt edge len 2957 erate 0.0308 score 2865.92 - absdiff 3788.13 percdiff 79.5828 tig 1 read 270668 pos 16712-28312 NOT confused by 5' edge to read 570851 - best edge read 313926 len 7052 erate 0.0268 score 6863.01 - alt edge len 1500 erate 0.0334 score 1449.90 - absdiff 5413.11 percdiff 130.2338 tig 1 read 270668 pos 16712-28312 NOT confused by 3' edge to read 574035 - best edge read 525789 len 9462 erate 0.0278 score 9198.96 - alt edge len 1612 erate 0.0485 score 1533.82 - absdiff 7665.14 percdiff 142.8361 tig 1 read 525789 pos 16995-26623 NOT confused by 3' edge to read 458296 - best edge read 270668 len 9457 erate 0.0278 score 9194.10 - alt edge len 806 erate 0.0612 score 756.67 - absdiff 8437.42 percdiff 169.5833 tig 1 read 525789 pos 16995-26623 NOT confused by 3' edge to read 570851 - best edge read 270668 len 9457 erate 0.0278 score 9194.10 - alt edge len 1674 erate 0.0275 score 1627.97 - absdiff 7566.13 percdiff 139.8279 tig 1 read 525789 pos 16995-26623 IS confused by 5' edge to read 574035 - best edge read 193758 len 2048 erate 0.0450 score 1955.84 - alt edge len 1623 erate 0.0462 score 1548.02 - absdiff 407.82 percdiff 23.2785 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 193758 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1944 erate 0.0376 score 1870.91 - absdiff 4996.97 percdiff 114.3631 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 254965 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1681 erate 0.0352 score 1621.83 - absdiff 5246.04 percdiff 123.5861 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 317143 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 2355 erate 0.0493 score 2238.90 - absdiff 948.72 percdiff 34.9660 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 433814 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1345 erate 0.0539 score 1272.50 - absdiff 5595.37 percdiff 137.4720 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 458296 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 1987 erate 0.0290 score 1929.38 - absdiff 1258.24 percdiff 49.1788 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 470923 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1030 erate 0.0516 score 976.85 - absdiff 5891.02 percdiff 150.1906 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 570851 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1759 erate 0.0302 score 1705.88 - absdiff 5161.99 percdiff 120.4139 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 574035 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1526 erate 0.0390 score 1466.49 - absdiff 5401.39 percdiff 129.6173 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 574036 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1562 erate 0.0491 score 1485.31 - absdiff 5382.57 percdiff 128.8747 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 595709 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 2577 erate 0.0308 score 2497.63 - absdiff 689.99 percdiff 24.2729 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 606433 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 1859 erate 0.0361 score 1791.89 - absdiff 1395.72 percdiff 56.0588 tig 1 read 223206 pos 29776-39710 NOT confused by 3' edge to read 317143 - best edge read 514260 len 9691 erate 0.0127 score 9567.92 - alt edge len 1660 erate 0.0596 score 1561.06 - absdiff 8006.86 percdiff 143.8920 tig 1 read 223206 pos 29776-39710 NOT confused by 3' edge to read 595709 - best edge read 514260 len 9691 erate 0.0127 score 9567.92 - alt edge len 2215 erate 0.0254 score 2158.74 - absdiff 7409.19 percdiff 126.3648 tig 1 read 223206 pos 29776-39710 NOT confused by 3' edge to read 606433 - best edge read 514260 len 9691 erate 0.0127 score 9567.92 - alt edge len 826 erate 0.0343 score 797.67 - absdiff 8770.26 percdiff 169.2186 tig 1 read 514260 pos 31032-42522 NOT confused by 5' edge to read 317143 - best edge read 304885 len 11078 erate 0.0359 score 10680.30 - alt edge len 2629 erate 0.0488 score 2500.70 - absdiff 8179.59 percdiff 124.1119 tig 1 read 514260 pos 31032-42522 NOT confused by 5' edge to read 595709 - best edge read 304885 len 11078 erate 0.0359 score 10680.30 - alt edge len 2851 erate 0.0325 score 2758.34 - absdiff 7921.96 percdiff 117.8982 tig 1 read 207090 pos 34485-45670 NOT confused by 5' edge to read 193760 - best edge read 458296 len 8109 erate 0.0251 score 7905.46 - alt edge len 762 erate 0.0599 score 716.36 - absdiff 7189.11 percdiff 166.7654 tig 1 read 458296 pos 37289-46549 NOT confused by 5' edge to read 313926 - best edge read 207090 len 8126 erate 0.0251 score 7922.04 - alt edge len 1965 erate 0.0290 score 1908.01 - absdiff 6014.02 percdiff 122.3599 tig 1 read 574036 pos 50187-58905 IS confused by 3' edge to read 313926 - best edge read 570851 len 2702 erate 0.0497 score 2567.71 - alt edge len 1573 erate 0.0491 score 1495.77 - absdiff 1071.94 percdiff 52.7600 saved region 1610:7959 - 3 best edges are potentially confused saved region 8425:46549 - 6 best edges are potentially confused saved region 50888:61885 - 1 best edges are potentially confused merge extended regions 1110:8459 and 7925:47049 break tig 1 into up to 4 pieces: 0 1110 unique (length 1110) 1110 47049 repeat (length 45939) 47049 50388 unique (length 3339) 50388 61885 repeat (length 11497) Creating Unitig 113047 Creating Unitig 113048 Creating Unitig 113049 Creating Unitig 113050 For tig 1 unique region 0 1110 - 0/ 1 reads repeat/unique - unitig 113047 created. For tig 1 repeat region 1110 47049 - 310/ 0 reads repeat/unique - unitig 113048 created. For tig 1 unique region 47049 50388 - 0/ 51 reads repeat/unique - unitig 113049 created. For tig 1 repeat region 50388 61885 - 26/ 0 reads repeat/unique - unitig 113050 created. Annotating repeats in reads for tig 2/113047. Annotated with 82 overlaps. Scan reads to discard spanned repeats. discard region 22683:21179 - contained in read 588983 17317- 26374 discard region 55577:56680 - contained in read 309476 50483- 58307 thickest edges to the repeat regions: saved region 22919:40468 - closest 5' read 349571 ( +0) 22919:31746 ( -8722) saved region 22919:40468 - closest 3' read 482852 ( -8587) 31506:41779 ( +1311) saved region 42806:50396 - closest read 17063 ( +212) 42594:50878 ( +482) (contained) saved region 42806:50396 - closest read 629269 ( +210) 42596:52080 ( +1684) (contained) saved region 42806:50396 - closest 5' read 629269 ( +210) 42596:52080 ( +1684) saved region 42806:50396 - closest 3' read 17063 ( +212) 42594:50878 ( +482) search for confused edges: tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 92087 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 2249 erate 0.0307 score 2179.96 - absdiff 5798.59 percdiff 114.1623 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 234370 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 1668 erate 0.0264 score 1623.96 - absdiff 6354.58 percdiff 132.3525 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 536214 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 1044 erate 0.0297 score 1012.99 - absdiff 6965.55 percdiff 154.9357 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 536216 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 1034 erate 0.0261 score 1007.01 - absdiff 6971.53 percdiff 155.1719 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 636841 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 2476 erate 0.0210 score 2424.00 - absdiff 5554.54 percdiff 106.7919 tig 2 read 349571 pos 22919-31746 IS confused by 3' edge to read 642492 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 6077 erate 0.0183 score 5965.79 - absdiff 2012.75 percdiff 28.8684 tig 2 read 139209 pos 23526-33165 NOT confused by 3' edge to read 266466 - best edge read 349571 len 8130 erate 0.0173 score 7989.35 - alt edge len 2506 erate 0.0526 score 2374.18 - absdiff 5615.17 percdiff 108.3639 tig 2 read 676110 pos 27632-38443 NOT confused by 5' edge to read 234370 - best edge read 676111 len 10654 erate 0.0102 score 10545.33 - alt edge len 8275 erate 0.0063 score 8222.87 - absdiff 2322.46 percdiff 24.7489 tig 2 read 676110 pos 27632-38443 IS confused by 5' edge to read 636841 - best edge read 676111 len 10654 erate 0.0102 score 10545.33 - alt edge len 9071 erate 0.0078 score 9000.25 - absdiff 1545.08 percdiff 15.8101 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 333093 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 2801 erate 0.0268 score 2725.93 - absdiff 2616.08 percdiff 64.8511 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 333094 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 1979 erate 0.0369 score 1905.97 - absdiff 3436.03 percdiff 94.8135 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 539525 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 2647 erate 0.0053 score 2632.97 - absdiff 2709.04 percdiff 67.9384 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 539526 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 2656 erate 0.0064 score 2639.00 - absdiff 2703.01 percdiff 67.7360 saved region 22919:40468 - 2 best edges are potentially confused discard region 42806:50396 - no confusion in best edges break tig 2 into up to 3 pieces: 0 22419 unique (length 22419) 22419 40968 repeat (length 18549) 40968 63110 unique (length 22142) Creating Unitig 113051 Creating Unitig 113052 Creating Unitig 113053 For tig 2 unique region 0 22419 - 0/ 62 reads repeat/unique - unitig 113051 created. For tig 2 repeat region 22419 40968 - 76/ 0 reads repeat/unique - unitig 113052 created. For tig 2 unique region 40968 63110 - 0/ 74 reads repeat/unique - unitig 113053 created. Annotating repeats in reads for tig 3/113047. Annotated with 1492 overlaps. Scan reads to discard spanned repeats. discard region 45083:46651 - contained in read 413350 44057- 48868 discard region 48459:49585 - contained in read 413351 44220- 50683 thickest edges to the repeat regions: saved region 1022:40142 - closest 5' read 495690 ( +0) 1022:9059 (-31083) saved region 1022:40142 - closest 3' read 329056 (-30943) 31965:40142 ( +0) saved region 43598:44478 - closest read 109529 ( +591) 43007:44483 ( +5) (contained) saved region 43598:44478 - closest read 559180 ( +0) 43598:45286 ( +808) (contained) saved region 43598:44478 - closest 5' read 559180 ( +0) 43598:45286 ( +808) saved region 43598:44478 - closest 3' read 109529 ( +591) 43007:44483 ( +5) search for confused edges: tig 3 read 190042 pos 3184-14057 IS confused by 5' edge to read 9364 - best edge read 402150 len 2844 erate 0.0254 score 2771.76 - alt edge len 2562 erate 0.0464 score 2443.12 - absdiff 328.64 percdiff 12.6039 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 52738 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 1928 erate 0.0556 score 1820.80 - absdiff 6649.17 percdiff 129.2258 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 56594 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 2733 erate 0.0517 score 2591.70 - absdiff 5878.27 percdiff 106.2817 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 130671 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 1834 erate 0.0665 score 1712.04 - absdiff 6757.94 percdiff 132.7426 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 140414 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 903 erate 0.0744 score 835.82 - absdiff 7634.16 percdiff 164.0733 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 350785 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 1884 erate 0.0512 score 1787.54 - absdiff 6682.44 percdiff 130.2935 tig 3 read 190042 pos 3184-14057 NOT confused by 5' edge to read 516253 - best edge read 402150 len 2844 erate 0.0254 score 2771.76 - alt edge len 512 erate 0.0332 score 495.00 - absdiff 2276.76 percdiff 139.3894 tig 3 read 190042 pos 3184-14057 NOT confused by 5' edge to read 516254 - best edge read 402150 len 2844 erate 0.0254 score 2771.76 - alt edge len 510 erate 0.0353 score 492.00 - absdiff 2279.77 percdiff 139.7018 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 664057 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 2773 erate 0.0604 score 2605.51 - absdiff 5864.47 percdiff 105.8999 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 664058 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 2789 erate 0.0671 score 2601.86 - absdiff 5868.12 percdiff 106.0008 tig 3 read 27915 pos 4898-14347 NOT confused by 3' edge to read 9364 - best edge read 190042 len 8752 erate 0.0372 score 8426.43 - alt edge len 2354 erate 0.0487 score 2239.36 - absdiff 6187.07 percdiff 116.0171 tig 3 read 27915 pos 4898-14347 NOT confused by 5' edge to read 52738 - best edge read 196098 len 4722 erate 0.0580 score 4448.12 - alt edge len 2482 erate 0.0612 score 2330.10 - absdiff 2118.02 percdiff 62.4949 tig 3 read 27915 pos 4898-14347 IS confused by 5' edge to read 56594 - best edge read 196098 len 4722 erate 0.0580 score 4448.12 - alt edge len 3327 erate 0.0616 score 3122.06 - absdiff 1326.07 percdiff 35.0340 tig 3 read 27915 pos 4898-14347 NOT confused by 5' edge to read 350785 - best edge read 196098 len 4722 erate 0.0580 score 4448.12 - alt edge len 2430 erate 0.0650 score 2272.05 - absdiff 2176.07 percdiff 64.7624 tig 3 read 196098 pos 8261-14166 NOT confused by 3' edge to read 9364 - best edge read 27915 len 4742 erate 0.0580 score 4466.96 - alt edge len 1311 erate 0.0568 score 1236.54 - absdiff 3230.43 percdiff 113.2788 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 21508 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 704 erate 0.0555 score 664.93 - absdiff 5051.24 percdiff 158.3189 tig 3 read 196098 pos 8261-14166 IS confused by 5' edge to read 56594 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 4481 erate 0.0427 score 4289.66 - absdiff 1426.51 percdiff 28.5136 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 113252 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1615 erate 0.0590 score 1519.72 - absdiff 4196.46 percdiff 115.9901 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 130671 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1632 erate 0.0589 score 1535.88 - absdiff 4180.30 percdiff 115.2860 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 140414 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 699 erate 0.0415 score 669.99 - absdiff 5046.18 percdiff 158.0348 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 140415 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 698 erate 0.0403 score 669.87 - absdiff 5046.30 percdiff 158.0416 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 172419 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1434 erate 0.0703 score 1333.19 - absdiff 4382.98 percdiff 124.3512 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 230528 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 2697 erate 0.0697 score 2509.02 - absdiff 3207.15 percdiff 77.9837 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 230529 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 2935 erate 0.0619 score 2753.32 - absdiff 2962.85 percdiff 69.9652 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 350785 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1671 erate 0.0665 score 1559.88 - absdiff 4156.29 percdiff 114.2459 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 398969 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 552 erate 0.0585 score 519.71 - absdiff 5196.46 percdiff 166.6634 tig 3 read 196098 pos 8261-14166 NOT confused by 3' edge to read 402149 - best edge read 27915 len 4742 erate 0.0580 score 4466.96 - alt edge len 1433 erate 0.0336 score 1384.85 - absdiff 3082.11 percdiff 105.3387 tig 3 read 196098 pos 8261-14166 NOT confused by 3' edge to read 402150 - best edge read 27915 len 4742 erate 0.0580 score 4466.96 - alt edge len 1593 erate 0.0341 score 1538.68 - absdiff 2928.29 percdiff 97.5178 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 536734 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1481 erate 0.0692 score 1378.51 - absdiff 4337.66 percdiff 122.2790 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 574860 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1021 erate 0.0559 score 963.93 - absdiff 4752.25 percdiff 142.2807 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 638612 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1631 erate 0.0688 score 1518.79 - absdiff 4197.39 percdiff 116.0307 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 638614 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1673 erate 0.0670 score 1560.91 - absdiff 4155.26 percdiff 114.2014 tig 3 read 196101 pos 8286-14255 NOT confused by 5' edge to read 9364 - best edge read 196098 len 5871 erate 0.0272 score 5711.31 - alt edge len 1310 erate 0.0522 score 1241.62 - absdiff 4469.69 percdiff 128.5701 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 21508 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 769 erate 0.0625 score 720.94 - absdiff 4470.77 percdiff 151.2274 tig 3 read 196101 pos 8286-14255 IS confused by 3' edge to read 56594 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 4545 erate 0.0449 score 4340.93 - absdiff 850.77 percdiff 17.8497 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 113252 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 1688 erate 0.0615 score 1584.19 - absdiff 3607.51 percdiff 106.4809 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 130671 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 1705 erate 0.0682 score 1588.72 - absdiff 3602.98 percdiff 106.2761 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 140414 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 764 erate 0.0485 score 726.95 - absdiff 4464.76 percdiff 150.8708 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 140415 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 763 erate 0.0461 score 727.83 - absdiff 4463.88 percdiff 150.8187 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 230528 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 2765 erate 0.0703 score 2570.62 - absdiff 2621.08 percdiff 67.5335 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 230529 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 3002 erate 0.0609 score 2819.18 - absdiff 2372.52 percdiff 59.2326 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 350785 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 1744 erate 0.0725 score 1617.56 - absdiff 3574.14 percdiff 104.9789 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 398969 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 619 erate 0.0738 score 573.32 - absdiff 4618.39 percdiff 160.2209 tig 3 read 196101 pos 8286-14255 NOT confused by 5' edge to read 402149 - best edge read 196098 len 5871 erate 0.0272 score 5711.31 - alt edge len 1430 erate 0.0287 score 1388.96 - absdiff 4322.35 percdiff 121.7517 tig 3 read 196101 pos 8286-14255 NOT confused by 5' edge to read 402150 - best edge read 196098 len 5871 erate 0.0272 score 5711.31 - alt edge len 1590 erate 0.0297 score 1542.78 - absdiff 4168.53 percdiff 114.9292 tig 3 read 601474 pos 8496-14173 NOT confused by 5' edge to read 9364 - best edge read 601472 len 5637 erate 0.0233 score 5505.66 - alt edge len 927 erate 0.0518 score 878.98 - absdiff 4626.68 percdiff 144.9315 tig 3 read 601474 pos 8496-14173 IS confused by 3' edge to read 56594 - best edge read 601475 len 5637 erate 0.0308 score 5463.38 - alt edge len 4636 erate 0.0685 score 4318.43 - absdiff 1144.95 percdiff 23.4097 tig 3 read 601474 pos 8496-14173 NOT confused by 3' edge to read 113252 - best edge read 601475 len 5637 erate 0.0308 score 5463.38 - alt edge len 1787 erate 0.0595 score 1680.67 - absdiff 3782.71 percdiff 105.8981 tig 3 read 601474 pos 8496-14173 NOT confused by 3' edge to read 113253 - best edge read 601475 len 5637 erate 0.0308 score 5463.38 - alt edge len 1577 erate 0.0737 score 1460.78 - absdiff 4002.61 percdiff 115.6128 tig 3 read 601474 pos 8496-14173 NOT confused by 5' edge to read 402149 - best edge read 601472 len 5637 erate 0.0233 score 5505.66 - alt edge len 1049 erate 0.0258 score 1021.94 - absdiff 4483.72 percdiff 137.3775 tig 3 read 601474 pos 8496-14173 NOT confused by 5' edge to read 402150 - best edge read 601472 len 5637 erate 0.0233 score 5505.66 - alt edge len 1206 erate 0.0275 score 1172.84 - absdiff 4332.82 percdiff 129.7545 tig 3 read 601472 pos 8573-14258 NOT confused by 5' edge to read 9364 - best edge read 196101 len 5562 erate 0.0654 score 5198.25 - alt edge len 923 erate 0.0553 score 871.96 - absdiff 4326.29 percdiff 142.5418 tig 3 read 601472 pos 8573-14258 IS confused by 3' edge to read 56594 - best edge read 601474 len 5660 erate 0.0233 score 5528.12 - alt edge len 4654 erate 0.0686 score 4334.74 - absdiff 1193.39 percdiff 24.1996 tig 3 read 601472 pos 8573-14258 NOT confused by 3' edge to read 113252 - best edge read 601474 len 5660 erate 0.0233 score 5528.12 - alt edge len 1781 erate 0.0638 score 1667.37 - absdiff 3860.75 percdiff 107.3102 tig 3 read 601472 pos 8573-14258 NOT confused by 3' edge to read 113253 - best edge read 601474 len 5660 erate 0.0233 score 5528.12 - alt edge len 1574 erate 0.0723 score 1460.20 - absdiff 4067.92 percdiff 116.4206 tig 3 read 601472 pos 8573-14258 NOT confused by 5' edge to read 402149 - best edge read 196101 len 5562 erate 0.0654 score 5198.25 - alt edge len 1046 erate 0.0315 score 1013.05 - absdiff 4185.19 percdiff 134.7607 tig 3 read 601472 pos 8573-14258 NOT confused by 5' edge to read 402150 - best edge read 196101 len 5562 erate 0.0654 score 5198.25 - alt edge len 1207 erate 0.0300 score 1170.79 - absdiff 4027.46 percdiff 126.4699 tig 3 read 601475 pos 8667-14333 NOT confused by 3' edge to read 9364 - best edge read 601474 len 5629 erate 0.0308 score 5455.63 - alt edge len 913 erate 0.0636 score 854.93 - absdiff 4600.69 percdiff 145.8094 tig 3 read 601475 pos 8667-14333 NOT confused by 3' edge to read 402149 - best edge read 601474 len 5629 erate 0.0308 score 5455.63 - alt edge len 1034 erate 0.0397 score 992.95 - absdiff 4462.68 percdiff 138.4081 tig 3 read 601475 pos 8667-14333 NOT confused by 3' edge to read 402150 - best edge read 601474 len 5629 erate 0.0308 score 5455.63 - alt edge len 1195 erate 0.0387 score 1148.75 - absdiff 4306.87 percdiff 130.4248 tig 3 read 51481 pos 13740-22172 NOT confused by 3' edge to read 17199 - best edge read 51480 len 8405 erate 0.0457 score 8020.89 - alt edge len 863 erate 0.0707 score 801.99 - absdiff 7218.91 percdiff 163.6406 tig 3 read 51480 pos 13902-22268 NOT confused by 5' edge to read 17199 - best edge read 481664 len 5639 erate 0.0403 score 5411.75 - alt edge len 865 erate 0.0492 score 822.44 - absdiff 4589.31 percdiff 147.2302 tig 3 read 51480 pos 13902-22268 NOT confused by 3' edge to read 664057 - best edge read 51481 len 8326 erate 0.0457 score 7945.50 - alt edge len 950 erate 0.0705 score 883.02 - absdiff 7062.48 percdiff 159.9922 tig 3 read 51480 pos 13902-22268 NOT confused by 3' edge to read 664058 - best edge read 51481 len 8326 erate 0.0457 score 7945.50 - alt edge len 948 erate 0.0728 score 878.99 - absdiff 7066.52 percdiff 160.1570 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 36062 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 1242 erate 0.0606 score 1166.73 - absdiff 3772.69 percdiff 123.5700 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 93171 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 2051 erate 0.0544 score 1939.43 - absdiff 3511.67 percdiff 95.0317 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 287455 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 1720 erate 0.0623 score 1612.84 - absdiff 3326.58 percdiff 101.5398 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 287457 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 1756 erate 0.0658 score 1640.46 - absdiff 3298.97 percdiff 100.2745 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 682536 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 1870 erate 0.0648 score 1748.82 - absdiff 3702.27 percdiff 102.8420 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 691283 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 2628 erate 0.0684 score 2448.24 - absdiff 2491.18 percdiff 67.4416 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 716843 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 1354 erate 0.0680 score 1261.93 - absdiff 4189.17 percdiff 124.8072 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 716844 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 1449 erate 0.0657 score 1353.80 - absdiff 4097.30 percdiff 120.4220 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 36062 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 707 erate 0.0610 score 663.87 - absdiff 5790.90 percdiff 162.6967 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 270935 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 2208 erate 0.0558 score 2084.79 - absdiff 7811.54 percdiff 130.3974 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 287455 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 4475 erate 0.0509 score 4247.22 - absdiff 2207.55 percdiff 41.2549 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 287457 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 1207 erate 0.0520 score 1144.24 - absdiff 5310.53 percdiff 139.7692 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 327420 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 4482 erate 0.0598 score 4213.98 - absdiff 2240.79 percdiff 42.0067 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 539919 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 6069 erate 0.0468 score 5784.97 - absdiff 4111.36 percdiff 52.4365 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 644710 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 1882 erate 0.0699 score 1750.45 - absdiff 8145.89 percdiff 139.8822 tig 3 read 563230 pos 18819-29218 IS confused by 5' edge to read 691283 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 5399 erate 0.0635 score 5056.16 - absdiff 1398.61 percdiff 24.3005 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 718181 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 5275 erate 0.0402 score 5062.94 - absdiff 4833.39 percdiff 64.6206 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 40822 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 982 erate 0.0571 score 925.93 - absdiff 5328.92 percdiff 148.4218 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 113253 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1275 erate 0.0499 score 1211.38 - absdiff 5043.47 percdiff 135.1009 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 130671 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 853 erate 0.0616 score 800.46 - absdiff 5454.39 percdiff 154.6182 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 196098 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1031 erate 0.0559 score 973.37 - absdiff 5281.48 percdiff 146.1351 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 230529 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1196 erate 0.0538 score 1131.66 - absdiff 5123.19 percdiff 138.7177 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 350785 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1354 erate 0.0619 score 1270.19 - absdiff 4984.66 percdiff 132.4820 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 590994 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1151 erate 0.0503 score 1093.10 - absdiff 5161.74 percdiff 140.4947 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 590995 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1152 erate 0.0451 score 1100.04 - absdiff 5154.80 percdiff 140.1734 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 40822 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1637 erate 0.0649 score 1530.76 - absdiff 3404.03 percdiff 105.2976 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 113253 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1925 erate 0.0609 score 1807.77 - absdiff 3127.03 percdiff 92.7548 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 196098 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1689 erate 0.0671 score 1575.67 - absdiff 3359.13 percdiff 103.1916 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 230529 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1849 erate 0.0667 score 1725.67 - absdiff 3209.12 percdiff 96.3633 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 350785 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 2002 erate 0.0705 score 1860.86 - absdiff 3073.93 percdiff 90.4677 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 590994 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1804 erate 0.0614 score 1693.23 - absdiff 3241.56 percdiff 97.8137 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 590995 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1805 erate 0.0569 score 1702.30 - absdiff 3232.50 percdiff 97.4071 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 629732 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 2193 erate 0.0638 score 2053.09 - absdiff 2881.71 percdiff 82.4773 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 40822 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1595 erate 0.0673 score 1487.66 - absdiff 5605.90 percdiff 130.6552 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 113253 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1888 erate 0.0618 score 1771.32 - absdiff 5322.24 percdiff 120.0747 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 130671 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1466 erate 0.0673 score 1367.34 - absdiff 5726.22 percdiff 135.3573 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 196098 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1650 erate 0.0688 score 1536.48 - absdiff 5557.08 percdiff 128.7846 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 230529 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1814 erate 0.0661 score 1694.09 - absdiff 5399.46 percdiff 122.8875 tig 3 read 638612 pos 19853-27179 NOT confused by 5' edge to read 287455 - best edge read 574860 len 6607 erate 0.0616 score 6200.01 - alt edge len 3625 erate 0.0684 score 3377.05 - absdiff 2822.96 percdiff 58.9525 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 350785 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1967 erate 0.0749 score 1819.67 - absdiff 5273.89 percdiff 118.3384 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 590994 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1769 erate 0.0546 score 1672.41 - absdiff 5421.15 percdiff 123.6862 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 590995 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1770 erate 0.0488 score 1683.62 - absdiff 5409.94 percdiff 123.2727 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 629732 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 2159 erate 0.0676 score 2013.05 - absdiff 5080.51 percdiff 111.5785 tig 3 read 638612 pos 19853-27179 IS confused by 5' edge to read 691283 - best edge read 574860 len 6607 erate 0.0616 score 6200.01 - alt edge len 4538 erate 0.0680 score 4229.42 - absdiff 1970.59 percdiff 37.7891 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 116666 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 1076 erate 0.0457 score 1026.83 - absdiff 5661.34 percdiff 146.7620 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 270935 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2714 erate 0.0372 score 2613.04 - absdiff 4075.12 percdiff 87.6257 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 287455 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 4421 erate 0.0600 score 4155.74 - absdiff 5721.25 percdiff 81.5415 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 287457 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 4457 erate 0.0652 score 4166.40 - absdiff 5710.59 percdiff 81.3277 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 327420 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 4427 erate 0.0716 score 4110.03 - absdiff 5766.97 percdiff 82.4617 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 539919 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 3271 erate 0.0378 score 3147.36 - absdiff 3540.81 percdiff 72.0004 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644706 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2824 erate 0.0646 score 2641.57 - absdiff 4046.59 percdiff 86.7462 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644708 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2878 erate 0.0604 score 2704.17 - absdiff 3983.99 percdiff 84.8350 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644709 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2787 erate 0.0539 score 2636.78 - absdiff 4051.38 percdiff 86.8934 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644710 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2387 erate 0.0497 score 2268.37 - absdiff 4419.80 percdiff 98.6944 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 691283 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 5337 erate 0.0708 score 4959.14 - absdiff 4917.85 percdiff 66.2956 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 718181 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2477 erate 0.0336 score 2393.77 - absdiff 4294.39 percdiff 94.5699 tig 3 read 250405 pos 22569-31075 IS confused by 5' edge to read 270935 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 5016 erate 0.0404 score 4813.35 - absdiff 1775.13 percdiff 31.1377 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 287455 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 6358 erate 0.0386 score 6112.58 - absdiff 904.64 percdiff 13.7800 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 287457 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 6394 erate 0.0427 score 6120.98 - absdiff 896.25 percdiff 13.6434 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 327420 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 6364 erate 0.0566 score 6003.80 - absdiff 1013.43 percdiff 15.5660 tig 3 read 250405 pos 22569-31075 NOT confused by 5' edge to read 539919 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 2280 erate 0.0360 score 2197.92 - absdiff 4390.57 percdiff 99.9400 tig 3 read 250405 pos 22569-31075 NOT confused by 5' edge to read 644710 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 1414 erate 0.0683 score 1317.42 - absdiff 5271.06 percdiff 133.3449 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 691283 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 7268 erate 0.0437 score 6950.39 - absdiff 66.84 percdiff 0.9570 tig 3 read 250405 pos 22569-31075 NOT confused by 3' edge to read 706969 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 4787 erate 0.0725 score 4439.94 - absdiff 2577.28 percdiff 44.9899 tig 3 read 250405 pos 22569-31075 NOT confused by 5' edge to read 718181 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 3143 erate 0.0369 score 3027.02 - absdiff 3561.46 percdiff 74.0775 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 51480 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 868 erate 0.0492 score 825.29 - absdiff 6165.35 percdiff 157.7635 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 51481 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 867 erate 0.0707 score 805.70 - absdiff 6184.94 percdiff 158.6625 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 116666 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 769 erate 0.0431 score 735.86 - absdiff 6254.79 percdiff 161.9048 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 270935 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 4039 erate 0.0379 score 3885.92 - absdiff 3104.72 percdiff 57.0901 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 539919 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2943 erate 0.0262 score 2865.89 - absdiff 4124.75 percdiff 83.6957 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 644708 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2550 erate 0.0724 score 2365.38 - absdiff 4625.27 percdiff 98.8724 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 644709 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2477 erate 0.0664 score 2312.53 - absdiff 4678.12 percdiff 100.5704 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 644710 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2075 erate 0.0557 score 1959.42 - absdiff 5031.22 percdiff 112.4287 tig 3 read 17199 pos 22659-31479 IS confused by 5' edge to read 718181 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 5440 erate 0.0335 score 5257.76 - absdiff 1732.89 percdiff 28.2957 tig 3 read 653348 pos 22724-30089 IS confused by 3' edge to read 270935 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 5368 erate 0.0372 score 5168.31 - absdiff 1282.68 percdiff 22.0784 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 287455 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 4899 erate 0.0536 score 4636.41 - absdiff 1959.65 percdiff 34.8926 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 287457 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 4935 erate 0.0567 score 4655.19 - absdiff 1940.88 percdiff 34.5007 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 327420 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 4905 erate 0.0521 score 4649.45 - absdiff 1946.61 percdiff 34.6203 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 539919 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 4271 erate 0.0368 score 4113.83 - absdiff 2337.16 percdiff 44.2443 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 644706 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 534 erate 0.0571 score 503.51 - absdiff 5947.48 percdiff 171.0398 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 644708 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 587 erate 0.0554 score 554.48 - absdiff 5896.51 percdiff 168.3402 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 691283 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 5804 erate 0.0552 score 5483.62 - absdiff 1112.44 percdiff 18.4184 tig 3 read 653348 pos 22724-30089 NOT confused by 5' edge to read 706969 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 3297 erate 0.0528 score 3122.92 - absdiff 3473.14 percdiff 71.4714 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 718181 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 3488 erate 0.0480 score 3320.58 - absdiff 3130.41 percdiff 64.0719 tig 3 read 472038 pos 23874-30403 IS confused by 5' edge to read 270935 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 5020 erate 0.0408 score 4815.18 - absdiff 1447.74 percdiff 26.1369 tig 3 read 472038 pos 23874-30403 NOT confused by 3' edge to read 506851 - best edge read 236069 len 3812 erate 0.0311 score 3693.45 - alt edge len 943 erate 0.0669 score 879.91 - absdiff 2813.53 percdiff 123.0401 tig 3 read 472038 pos 23874-30403 NOT confused by 3' edge to read 506855 - best edge read 236069 len 3812 erate 0.0311 score 3693.45 - alt edge len 887 erate 0.0576 score 835.91 - absdiff 2857.54 percdiff 126.1786 tig 3 read 472038 pos 23874-30403 NOT confused by 5' edge to read 539919 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 2278 erate 0.0347 score 2198.95 - absdiff 4063.97 percdiff 96.0536 tig 3 read 472038 pos 23874-30403 NOT confused by 5' edge to read 644710 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 1424 erate 0.0583 score 1340.98 - absdiff 4921.94 percdiff 129.4583 tig 3 read 472038 pos 23874-30403 IS confused by 5' edge to read 718181 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 4785 erate 0.0387 score 4599.82 - absdiff 1663.10 percdiff 30.6203 tig 3 read 665025 pos 31225-37509 NOT confused by 5' edge to read 141999 - best edge read 665027 len 6202 erate 0.0224 score 6063.08 - alt edge len 3729 erate 0.0402 score 3579.09 - absdiff 2483.98 percdiff 51.5233 tig 3 read 665025 pos 31225-37509 IS confused by 3' edge to read 161528 - best edge read 236071 len 1733 erate 0.0677 score 1615.68 - alt edge len 691 erate 0.0556 score 652.58 - absdiff 963.10 percdiff 84.9195 tig 3 read 665025 pos 31225-37509 IS confused by 3' edge to read 161529 - best edge read 236071 len 1733 erate 0.0677 score 1615.68 - alt edge len 688 erate 0.0680 score 641.22 - absdiff 974.46 percdiff 86.3541 tig 3 read 665025 pos 31225-37509 NOT confused by 5' edge to read 253404 - best edge read 665027 len 6202 erate 0.0224 score 6063.08 - alt edge len 2307 erate 0.0499 score 2191.88 - absdiff 3871.19 percdiff 93.7908 tig 3 read 665025 pos 31225-37509 NOT confused by 5' edge to read 294691 - best edge read 665027 len 6202 erate 0.0224 score 6063.08 - alt edge len 2554 erate 0.0437 score 2442.39 - absdiff 3620.68 percdiff 85.1378 tig 3 read 665027 pos 31242-37531 IS confused by 5' edge to read 141999 - best edge read 329056 len 5486 erate 0.0659 score 5124.47 - alt edge len 3734 erate 0.0412 score 3580.16 - absdiff 1544.31 percdiff 35.4826 tig 3 read 665027 pos 31242-37531 NOT confused by 3' edge to read 161528 - best edge read 665025 len 6170 erate 0.0224 score 6031.79 - alt edge len 687 erate 0.0572 score 647.70 - absdiff 5384.09 percdiff 161.2124 tig 3 read 665027 pos 31242-37531 NOT confused by 3' edge to read 161529 - best edge read 665025 len 6170 erate 0.0224 score 6031.79 - alt edge len 684 erate 0.0667 score 638.38 - absdiff 5393.41 percdiff 161.7175 tig 3 read 665027 pos 31242-37531 NOT confused by 5' edge to read 253404 - best edge read 329056 len 5486 erate 0.0659 score 5124.47 - alt edge len 2313 erate 0.0442 score 2210.77 - absdiff 2913.71 percdiff 79.4441 tig 3 read 665027 pos 31242-37531 NOT confused by 5' edge to read 294691 - best edge read 329056 len 5486 erate 0.0659 score 5124.47 - alt edge len 2561 erate 0.0476 score 2439.10 - absdiff 2685.38 percdiff 71.0082 tig 3 read 382743 pos 38544-43570 IS confused by 5' edge to read 329054 - best edge read 329056 len 1588 erate 0.0470 score 1513.36 - alt edge len 1570 erate 0.0463 score 1497.31 - absdiff 16.06 percdiff 1.0665 tig 3 read 382743 pos 38544-43570 IS confused by 5' edge to read 667648 - best edge read 329056 len 1588 erate 0.0470 score 1513.36 - alt edge len 583 erate 0.0421 score 558.46 - absdiff 954.91 percdiff 92.1806 saved region 1022:40142 - 26 best edges are potentially confused discard region 43598:44478 - no confusion in best edges break tig 3 into up to 3 pieces: 0 522 unique (length 522) 522 40642 repeat (length 40120) 40642 52165 unique (length 11523) Creating Unitig 113054 Creating Unitig 113055 Creating Unitig 113056 For tig 3 unique region 0 522 - 0/ 1 reads repeat/unique - unitig 113054 created. For tig 3 repeat region 522 40642 - 278/ 0 reads repeat/unique - unitig 113055 created. For tig 3 unique region 40642 52165 - 0/ 24 reads repeat/unique - unitig 113056 created. Annotating repeats in reads for tig 5/113047. Annotated with 364 overlaps. Scan reads to discard spanned repeats. discard region 0:9580 - contained in read 512517 0- 13080 discard region 24218:29804 - contained in read 500940 20538- 32656 thickest edges to the repeat regions: saved region 49121:58568 - closest read 55688 ( +186) 48935:58568 ( +0) (contained) saved region 49121:58568 - closest 5' read 55688 ( +186) 48935:58568 ( +0) saved region 49121:58568 - closest 3' read 55688 ( +186) 48935:58568 ( +0) search for confused edges: discard region 49121:58568 - no confusion in best edges Annotating repeats in reads for tig 6/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 24107:29394 - contained in read 713303 21358- 31008 thickest edges to the repeat regions: saved region 20042:22718 - closest 5' read 700761 ( +2511) 17531:22573 ( -145) saved region 20042:22718 - closest 3' read 482939 ( -483) 20525:27373 ( +4655) search for confused edges: tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 145088 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1323 erate 0.0615 score 1241.64 - absdiff 621.14 percdiff 40.0164 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 227639 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1477 erate 0.0678 score 1376.86 - absdiff 485.91 percdiff 29.9980 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 256025 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1215 erate 0.0684 score 1131.89 - absdiff 730.88 percdiff 48.8120 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 269046 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1094 erate 0.0659 score 1021.91 - absdiff 840.87 percdiff 58.2988 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 511541 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 942 erate 0.0733 score 872.95 - absdiff 989.82 percdiff 72.3626 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 567996 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1438 erate 0.0697 score 1337.77 - absdiff 525.00 percdiff 32.8069 saved region 20042:22718 - 6 best edges are potentially confused break tig 6 into up to 3 pieces: 0 19542 unique (length 19542) 19542 23218 repeat (length 3676) 23218 62646 unique (length 39428) Creating Unitig 113057 Creating Unitig 113058 Creating Unitig 113059 For tig 6 unique region 0 19542 - 0/ 18 reads repeat/unique - unitig 113057 created. For tig 6 repeat region 19542 23218 - 4/ 0 reads repeat/unique - unitig 113059 created. For tig 6 unique region 23218 62646 - 0/ 67 reads repeat/unique - unitig 113058 created. Annotating repeats in reads for tig 7/113047. Annotated with 323 overlaps. Scan reads to discard spanned repeats. discard region 29161:30410 - contained in read 380812 22096- 35354 discard region 46134:49426 - contained in read 169327 45314- 50547 thickest edges to the repeat regions: saved region 12887:26832 - closest 5' read 587062 ( +236) 12651:20849 ( -5983) saved region 12887:26832 - closest 3' read 541837 ( -3059) 15946:27696 ( +864) saved region 30623:36782 - closest 5' read 703477 ( +1001) 29622:36776 ( -6) saved region 30623:36782 - closest 3' read 702416 ( -4191) 34814:36782 ( +0) search for confused edges: tig 7 read 587062 pos 12651-20849 NOT confused by 3' edge to read 410359 - best edge read 211689 len 7208 erate 0.0163 score 7090.51 - alt edge len 1681 erate 0.0732 score 1557.95 - absdiff 5532.56 percdiff 127.9432 tig 7 read 211689 pos 13470-23735 NOT confused by 3' edge to read 61970 - best edge read 587062 len 7194 erate 0.0163 score 7076.74 - alt edge len 537 erate 0.0281 score 521.91 - absdiff 6554.83 percdiff 172.5261 tig 7 read 211689 pos 13470-23735 NOT confused by 5' edge to read 190346 - best edge read 295407 len 9491 erate 0.0248 score 9255.62 - alt edge len 3264 erate 0.0413 score 3129.20 - absdiff 6126.43 percdiff 98.9344 tig 7 read 211689 pos 13470-23735 NOT confused by 5' edge to read 295570 - best edge read 295407 len 9491 erate 0.0248 score 9255.62 - alt edge len 2629 erate 0.0240 score 2565.90 - absdiff 6689.72 percdiff 113.1786 tig 7 read 295407 pos 14065-24527 NOT confused by 5' edge to read 190346 - best edge read 659233 len 9680 erate 0.0606 score 9093.39 - alt edge len 4035 erate 0.0517 score 3826.39 - absdiff 5267.00 percdiff 81.5339 tig 7 read 295407 pos 14065-24527 NOT confused by 5' edge to read 295570 - best edge read 659233 len 9680 erate 0.0606 score 9093.39 - alt edge len 3409 erate 0.0560 score 3218.10 - absdiff 5875.30 percdiff 95.4441 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 109876 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 6195 erate 0.0178 score 6084.73 - absdiff 3016.15 percdiff 39.7238 tig 7 read 659233 pos 14640-25504 NOT confused by 5' edge to read 190346 - best edge read 60547 len 10572 erate 0.0318 score 10235.81 - alt edge len 4989 erate 0.0425 score 4776.97 - absdiff 5458.84 percdiff 72.7226 tig 7 read 659233 pos 14640-25504 IS confused by 3' edge to read 275269 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 9492 erate 0.0338 score 9171.17 - absdiff 70.29 percdiff 0.7694 tig 7 read 659233 pos 14640-25504 NOT confused by 5' edge to read 295570 - best edge read 60547 len 10572 erate 0.0318 score 10235.81 - alt edge len 4351 erate 0.0329 score 4207.85 - absdiff 6027.96 percdiff 83.4686 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 299294 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 797 erate 0.0276 score 775.00 - absdiff 8325.87 percdiff 168.6103 tig 7 read 659233 pos 14640-25504 NOT confused by 5' edge to read 580301 - best edge read 60547 len 10572 erate 0.0318 score 10235.81 - alt edge len 1121 erate 0.0611 score 1052.51 - absdiff 9183.30 percdiff 162.7046 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 657576 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 5924 erate 0.0200 score 5805.52 - absdiff 3295.36 percdiff 44.2140 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 657577 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 5837 erate 0.0201 score 5719.68 - absdiff 3381.20 percdiff 45.6285 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 109876 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 6112 erate 0.0319 score 5917.03 - absdiff 4249.07 percdiff 52.8389 tig 7 read 60547 pos 14736-25768 NOT confused by 3' edge to read 190346 - best edge read 60546 len 10780 erate 0.0232 score 10529.90 - alt edge len 5231 erate 0.0312 score 5067.79 - absdiff 5462.11 percdiff 70.0374 tig 7 read 60547 pos 14736-25768 IS confused by 5' edge to read 275269 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 9397 erate 0.0291 score 9123.55 - absdiff 1042.55 percdiff 10.8095 tig 7 read 60547 pos 14736-25768 NOT confused by 3' edge to read 295570 - best edge read 60546 len 10780 erate 0.0232 score 10529.90 - alt edge len 4585 erate 0.0419 score 4392.89 - absdiff 6137.02 percdiff 82.2502 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 299294 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 737 erate 0.0326 score 712.97 - absdiff 9453.13 percdiff 173.7855 tig 7 read 60547 pos 14736-25768 NOT confused by 3' edge to read 580301 - best edge read 60546 len 10780 erate 0.0232 score 10529.90 - alt edge len 1384 erate 0.0600 score 1300.96 - absdiff 9228.94 percdiff 156.0147 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 657576 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 5832 erate 0.0318 score 5646.54 - absdiff 4519.56 percdiff 57.1639 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 657577 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 5748 erate 0.0343 score 5550.84 - absdiff 4615.26 percdiff 58.7297 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 109876 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 6106 erate 0.0344 score 5895.95 - absdiff 5132.28 percdiff 60.6502 tig 7 read 60544 pos 14754-26310 NOT confused by 5' edge to read 190346 - best edge read 60545 len 11283 erate 0.0183 score 11076.52 - alt edge len 5761 erate 0.0309 score 5582.99 - absdiff 5493.54 percdiff 65.9508 tig 7 read 60544 pos 14754-26310 IS confused by 3' edge to read 275269 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 9377 erate 0.0312 score 9084.44 - absdiff 1943.79 percdiff 19.3290 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 299294 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 709 erate 0.0579 score 667.95 - absdiff 10360.28 percdiff 177.1567 tig 7 read 60544 pos 14754-26310 NOT confused by 5' edge to read 580301 - best edge read 60545 len 11283 erate 0.0183 score 11076.52 - alt edge len 1925 erate 0.0464 score 1835.68 - absdiff 9240.84 percdiff 143.1335 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 657576 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 5820 erate 0.0361 score 5609.90 - absdiff 5418.33 percdiff 65.1315 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 657577 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 5734 erate 0.0365 score 5524.71 - absdiff 5503.52 percdiff 66.4960 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 109876 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 6102 erate 0.0354 score 5885.99 - absdiff 4626.33 percdiff 56.4245 tig 7 read 60546 pos 14765-26261 NOT confused by 5' edge to read 190346 - best edge read 60544 len 11235 erate 0.0198 score 11012.55 - alt edge len 5701 erate 0.0346 score 5503.75 - absdiff 5508.80 percdiff 66.7075 tig 7 read 60546 pos 14765-26261 IS confused by 3' edge to read 275269 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 9366 erate 0.0348 score 9040.06 - absdiff 1472.26 percdiff 15.0596 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 299294 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 711 erate 0.0534 score 673.03 - absdiff 9839.29 percdiff 175.9316 tig 7 read 60546 pos 14765-26261 NOT confused by 5' edge to read 580301 - best edge read 60544 len 11235 erate 0.0198 score 11012.55 - alt edge len 1872 erate 0.0482 score 1781.77 - absdiff 9230.78 percdiff 144.2950 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 657576 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 5820 erate 0.0371 score 5604.08 - absdiff 4908.24 percdiff 60.9099 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 657577 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 5733 erate 0.0372 score 5519.73 - absdiff 4992.59 percdiff 62.2826 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 109876 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 6068 erate 0.0345 score 5858.65 - absdiff 5231.61 percdiff 61.7339 tig 7 read 60545 pos 14780-26333 NOT confused by 3' edge to read 190346 - best edge read 541838 len 10130 erate 0.0332 score 9793.68 - alt edge len 5801 erate 0.0292 score 5631.61 - absdiff 4162.07 percdiff 53.9643 tig 7 read 60545 pos 14780-26333 IS confused by 5' edge to read 275269 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 9369 erate 0.0302 score 9086.06 - absdiff 2004.21 percdiff 19.8669 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 299294 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 694 erate 0.0534 score 656.94 - absdiff 10433.32 percdiff 177.6308 tig 7 read 60545 pos 14780-26333 NOT confused by 3' edge to read 580301 - best edge read 541838 len 10130 erate 0.0332 score 9793.68 - alt edge len 1935 erate 0.0483 score 1841.54 - absdiff 7952.14 percdiff 136.6909 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 657576 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 5783 erate 0.0344 score 5584.06 - absdiff 5506.20 percdiff 66.0440 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 657577 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 5696 erate 0.0358 score 5492.08 - absdiff 5598.18 percdiff 67.5198 tig 7 read 541838 pos 15958-28450 NOT confused by 5' edge to read 109876 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 4878 erate 0.0211 score 4775.07 - absdiff 5051.48 percdiff 69.1906 tig 7 read 541838 pos 15958-28450 IS confused by 5' edge to read 275269 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 8201 erate 0.0346 score 7917.25 - absdiff 1909.31 percdiff 21.5209 tig 7 read 541838 pos 15958-28450 NOT confused by 5' edge to read 657576 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 4611 erate 0.0228 score 4505.87 - absdiff 5320.69 percdiff 74.2468 tig 7 read 541838 pos 15958-28450 NOT confused by 5' edge to read 657577 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 4523 erate 0.0232 score 4418.07 - absdiff 5408.49 percdiff 75.9373 tig 7 read 570053 pos 36012-42800 IS confused by 5' edge to read 109876 - best edge read 485805 len 727 erate 0.0550 score 687.01 - alt edge len 724 erate 0.0565 score 683.09 - absdiff 3.92 percdiff 0.5724 tig 7 read 570053 pos 36012-42800 IS confused by 5' edge to read 275269 - best edge read 485805 len 727 erate 0.0550 score 687.01 - alt edge len 722 erate 0.0511 score 685.11 - absdiff 1.91 percdiff 0.2783 saved region 12887:26832 - 6 best edges are potentially confused saved region 30623:36782 - 2 best edges are potentially confused break tig 7 into up to 5 pieces: 0 12387 unique (length 12387) 12387 27332 repeat (length 14945) 27332 30123 unique (length 2791) 30123 37282 repeat (length 7159) 37282 52027 unique (length 14745) Creating Unitig 113060 Creating Unitig 113061 Creating Unitig 113062 Creating Unitig 113063 Creating Unitig 113064 For tig 7 unique region 0 12387 - 0/ 6 reads repeat/unique - unitig 113060 created. For tig 7 repeat region 12387 27332 - 116/ 0 reads repeat/unique - unitig 113061 created. For tig 7 unique region 27332 30123 - 0/ 85 reads repeat/unique - unitig 113062 created. For tig 7 repeat region 30123 37282 - 24/ 0 reads repeat/unique - unitig 113063 created. For tig 7 unique region 37282 52027 - 0/ 17 reads repeat/unique - unitig 113064 created. Annotating repeats in reads for tig 8/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 33690:32997 - contained in read 325308 25561- 42540 discard region 34605:35478 - contained in read 325308 25561- 42540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10/113047. Annotated with 538 overlaps. Scan reads to discard spanned repeats. discard region 53305:57784 - contained in read 700347 50856- 59122 thickest edges to the repeat regions: saved region 4869:20097 - closest 5' read 518374 ( +4869) 0:12623 ( -7474) saved region 4869:20097 - closest 3' read 215695 ( -5792) 10661:20592 ( +495) saved region 20856:33446 - closest 5' read 156595 ( +2021) 18835:33390 ( -56) saved region 20856:33446 - closest 3' read 196075 ( -2883) 23739:33446 ( +0) saved region 33442:51135 - closest 5' read 368659 ( +1989) 31453:38586 (-12549) saved region 33442:51135 - closest 3' read 177558 (-11020) 44462:51135 ( +0) search for confused edges: tig 10 read 368659 pos 31453-38586 NOT confused by 3' edge to read 679092 - best edge read 274132 len 4351 erate 0.0291 score 4224.39 - alt edge len 1623 erate 0.0385 score 1560.51 - absdiff 2663.87 percdiff 92.0974 tig 10 read 274132 pos 34138-42902 NOT confused by 5' edge to read 544640 - best edge read 368659 len 4392 erate 0.0291 score 4264.19 - alt edge len 1732 erate 0.0313 score 1677.79 - absdiff 2586.40 percdiff 87.0553 tig 10 read 274132 pos 34138-42902 NOT confused by 5' edge to read 594004 - best edge read 368659 len 4392 erate 0.0291 score 4264.19 - alt edge len 1063 erate 0.0287 score 1032.49 - absdiff 3231.70 percdiff 122.0273 tig 10 read 274132 pos 34138-42902 IS confused by 5' edge to read 649997 - best edge read 368659 len 4392 erate 0.0291 score 4264.19 - alt edge len 2309 erate 0.0282 score 2243.89 - absdiff 2020.31 percdiff 62.0861 tig 10 read 438982 pos 37089-47192 NOT confused by 3' edge to read 547485 - best edge read 192783 len 9844 erate 0.0568 score 9284.86 - alt edge len 4028 erate 0.0179 score 3955.90 - absdiff 5328.96 percdiff 80.4933 tig 10 read 438982 pos 37089-47192 NOT confused by 3' edge to read 547487 - best edge read 192783 len 9844 erate 0.0568 score 9284.86 - alt edge len 4029 erate 0.0246 score 3929.89 - absdiff 5354.97 percdiff 81.0454 tig 10 read 192783 pos 37562-47768 NOT confused by 3' edge to read 547485 - best edge read 637664 len 7443 erate 0.0145 score 7335.08 - alt edge len 4628 erate 0.0175 score 4547.01 - absdiff 2788.07 percdiff 46.9289 tig 10 read 192783 pos 37562-47768 NOT confused by 3' edge to read 547487 - best edge read 637664 len 7443 erate 0.0145 score 7335.08 - alt edge len 4629 erate 0.0243 score 4516.52 - absdiff 2818.56 percdiff 47.5643 tig 10 read 637664 pos 40229-48721 NOT confused by 3' edge to read 547485 - best edge read 262872 len 7836 erate 0.0165 score 7706.71 - alt edge len 5543 erate 0.0121 score 5475.93 - absdiff 2230.78 percdiff 33.8442 tig 10 read 637664 pos 40229-48721 NOT confused by 3' edge to read 547487 - best edge read 262872 len 7836 erate 0.0165 score 7706.71 - alt edge len 5544 erate 0.0174 score 5447.53 - absdiff 2259.17 percdiff 34.3489 tig 10 read 262872 pos 40794-49677 IS confused by 3' edge to read 547485 - best edge read 373241 len 7829 erate 0.0255 score 7629.36 - alt edge len 6494 erate 0.0356 score 6262.81 - absdiff 1366.55 percdiff 19.6736 tig 10 read 262872 pos 40794-49677 IS confused by 3' edge to read 547487 - best edge read 373241 len 7829 erate 0.0255 score 7629.36 - alt edge len 6495 erate 0.0419 score 6222.86 - absdiff 1406.50 percdiff 20.3072 tig 10 read 373241 pos 41747-49662 IS confused by 5' edge to read 547485 - best edge read 443260 len 7737 erate 0.0149 score 7621.72 - alt edge len 6471 erate 0.0119 score 6394.00 - absdiff 1227.72 percdiff 17.5192 tig 10 read 373241 pos 41747-49662 IS confused by 5' edge to read 547487 - best edge read 443260 len 7737 erate 0.0149 score 7621.72 - alt edge len 6472 erate 0.0170 score 6361.98 - absdiff 1259.74 percdiff 18.0173 tig 10 read 443260 pos 41808-50536 IS confused by 5' edge to read 547485 - best edge read 145176 len 8216 erate 0.0324 score 7949.80 - alt edge len 7350 erate 0.0300 score 7129.50 - absdiff 820.30 percdiff 10.8798 tig 10 read 443260 pos 41808-50536 IS confused by 5' edge to read 547487 - best edge read 145176 len 8216 erate 0.0324 score 7949.80 - alt edge len 7351 erate 0.0369 score 7079.75 - absdiff 870.05 percdiff 11.5779 discard region 4869:20097 - no confusion in best edges discard region 20856:33446 - no confusion in best edges saved region 33442:51135 - 7 best edges are potentially confused break tig 10 into up to 3 pieces: 0 32942 unique (length 32942) 32942 51635 repeat (length 18693) 51635 60979 unique (length 9344) Creating Unitig 113065 Creating Unitig 113066 Creating Unitig 113067 For tig 10 unique region 0 32942 - 0/ 307 reads repeat/unique - unitig 113065 created. For tig 10 repeat region 32942 51635 - 100/ 0 reads repeat/unique - unitig 113066 created. For tig 10 unique region 51635 60979 - 0/ 80 reads repeat/unique - unitig 113067 created. Annotating repeats in reads for tig 11/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 10533:11566 - contained in read 409664 6983- 12658 discard region 18422:19411 - contained in read 610998 13962- 22934 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 40064:47360 - contained in read 125621 39089- 47360 thickest edges to the repeat regions: saved region 789:8300 - closest read 95721 ( +789) 0:8347 ( +47) (contained) saved region 789:8300 - closest read 95723 ( +776) 13:8345 ( +45) (contained) saved region 789:8300 - closest read 95722 ( +746) 43:8331 ( +31) (contained) saved region 789:8300 - closest read 45065 ( +0) 789:14865 ( +6565) (contained) saved region 789:8300 - closest 5' read 45065 ( +0) 789:14865 ( +6565) saved region 789:8300 - closest 3' read 95721 ( +789) 0:8347 ( +47) saved region 31250:32249 - closest read 513861 ( +4145) 27105:32468 ( +219) (contained) saved region 31250:32249 - closest read 178500 ( +4137) 27113:32249 ( +0) (contained) saved region 31250:32249 - closest 5' read 513861 ( +4145) 27105:32468 ( +219) saved region 31250:32249 - closest 3' read 513861 ( +4145) 27105:32468 ( +219) search for confused edges: discard region 789:8300 - no confusion in best edges discard region 31250:32249 - no confusion in best edges Annotating repeats in reads for tig 15/113047. Annotated with 243 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:27825 - closest 5' read 275648 ( +0) 0:11064 (-16761) saved region 0:27825 - closest 3' read 330971 (-18066) 18066:27825 ( +0) search for confused edges: tig 15 read 275648 pos 0-11064 NOT confused by 3' edge to read 657005 - best edge read 467587 len 9311 erate 0.0304 score 9027.95 - alt edge len 599 erate 0.0742 score 554.55 - absdiff 8473.39 percdiff 176.8514 tig 15 read 467587 pos 1681-12041 NOT confused by 3' edge to read 330971 - best edge read 275648 len 9267 erate 0.0304 score 8985.28 - alt edge len 5511 erate 0.0499 score 5236.00 - absdiff 3749.28 percdiff 52.7278 tig 15 read 467587 pos 1681-12041 NOT confused by 5' edge to read 514862 - best edge read 467588 len 10243 erate 0.0190 score 10048.38 - alt edge len 4390 erate 0.0353 score 4235.03 - absdiff 5813.35 percdiff 81.4000 tig 15 read 467587 pos 1681-12041 NOT confused by 5' edge to read 657005 - best edge read 467588 len 10243 erate 0.0190 score 10048.38 - alt edge len 1568 erate 0.0319 score 1517.98 - absdiff 8530.40 percdiff 147.5036 tig 15 read 467588 pos 1709-12042 NOT confused by 5' edge to read 330971 - best edge read 467587 len 10200 erate 0.0190 score 10006.20 - alt edge len 5485 erate 0.0543 score 5187.16 - absdiff 4819.04 percdiff 63.4361 tig 15 read 467588 pos 1709-12042 NOT confused by 3' edge to read 514862 - best edge read 467586 len 10179 erate 0.0215 score 9960.15 - alt edge len 4385 erate 0.0397 score 4210.92 - absdiff 5749.24 percdiff 81.1405 tig 15 read 467588 pos 1709-12042 NOT confused by 3' edge to read 657005 - best edge read 467586 len 10179 erate 0.0215 score 9960.15 - alt edge len 1578 erate 0.0306 score 1529.71 - absdiff 8430.44 percdiff 146.7456 tig 15 read 467586 pos 1739-12056 NOT confused by 5' edge to read 330971 - best edge read 467588 len 10195 erate 0.0215 score 9975.81 - alt edge len 5455 erate 0.0541 score 5159.88 - absdiff 4815.92 percdiff 63.6366 tig 15 read 467586 pos 1739-12056 NOT confused by 3' edge to read 514862 - best edge read 73634 len 6596 erate 0.0234 score 6441.65 - alt edge len 4408 erate 0.0392 score 4235.21 - absdiff 2206.45 percdiff 41.3314 tig 15 read 467586 pos 1739-12056 NOT confused by 3' edge to read 657005 - best edge read 73634 len 6596 erate 0.0234 score 6441.65 - alt edge len 1592 erate 0.0349 score 1536.44 - absdiff 4905.21 percdiff 122.9671 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 52386 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 796 erate 0.0594 score 748.72 - absdiff 5709.54 percdiff 158.4448 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 52387 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 712 erate 0.0537 score 673.77 - absdiff 5784.49 percdiff 162.2118 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 52388 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 780 erate 0.0569 score 735.62 - absdiff 5722.64 percdiff 159.0975 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 379650 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 1478 erate 0.0550 score 1396.71 - absdiff 5061.55 percdiff 128.8751 tig 15 read 73634 pos 5376-12154 NOT confused by 5' edge to read 514862 - best edge read 73636 len 6701 erate 0.0231 score 6546.21 - alt edge len 4505 erate 0.0463 score 4296.42 - absdiff 2249.79 percdiff 41.4990 tig 15 read 73634 pos 5376-12154 NOT confused by 5' edge to read 657005 - best edge read 73636 len 6701 erate 0.0231 score 6546.21 - alt edge len 1684 erate 0.0449 score 1608.39 - absdiff 4937.82 percdiff 121.1052 tig 15 read 73637 pos 5384-12183 NOT confused by 5' edge to read 379650 - best edge read 73636 len 6723 erate 0.0343 score 6492.40 - alt edge len 1470 erate 0.0597 score 1382.24 - absdiff 5110.16 percdiff 129.7877 tig 15 read 73637 pos 5384-12183 IS confused by 3' edge to read 514862 - best edge read 482710 len 6337 erate 0.0413 score 6075.28 - alt edge len 4542 erate 0.0696 score 4225.88 - absdiff 1849.41 percdiff 35.9067 tig 15 read 73637 pos 5384-12183 NOT confused by 3' edge to read 657005 - best edge read 482710 len 6337 erate 0.0413 score 6075.28 - alt edge len 1716 erate 0.0578 score 1616.82 - absdiff 4458.47 percdiff 115.9233 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 52386 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 792 erate 0.0520 score 750.82 - absdiff 5787.58 percdiff 158.7985 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 52387 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 708 erate 0.0471 score 674.65 - absdiff 5863.74 percdiff 162.5871 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 52388 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 776 erate 0.0522 score 735.49 - absdiff 5802.90 percdiff 159.5543 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 379650 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 1469 erate 0.0519 score 1392.76 - absdiff 5145.63 percdiff 129.7575 tig 15 read 73636 pos 5385-12171 NOT confused by 5' edge to read 514862 - best edge read 73637 len 6710 erate 0.0343 score 6479.85 - alt edge len 4518 erate 0.0377 score 4347.67 - absdiff 2132.18 percdiff 39.3844 tig 15 read 73636 pos 5385-12171 NOT confused by 5' edge to read 657005 - best edge read 73637 len 6710 erate 0.0343 score 6479.85 - alt edge len 1702 erate 0.0361 score 1640.56 - absdiff 4839.29 percdiff 119.1884 tig 15 read 482710 pos 5796-14281 NOT confused by 5' edge to read 330971 - best edge read 73637 len 6338 erate 0.0413 score 6076.24 - alt edge len 1455 erate 0.0637 score 1362.32 - absdiff 4713.92 percdiff 126.7430 tig 15 read 482710 pos 5796-14281 NOT confused by 5' edge to read 379650 - best edge read 73637 len 6338 erate 0.0413 score 6076.24 - alt edge len 1078 erate 0.0381 score 1036.93 - absdiff 5039.31 percdiff 141.6897 tig 15 read 404540 pos 5968-20404 NOT confused by 5' edge to read 379650 - best edge read 482710 len 8279 erate 0.0210 score 8105.14 - alt edge len 979 erate 0.0431 score 936.81 - absdiff 7168.34 percdiff 158.5574 saved region 0:27825 - 1 best edges are potentially confused Annotating repeats in reads for tig 20/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6594:3677 - contained in read 202548 0- 6511 discard region 6594:3799 - contained in read 202548 0- 6511 discard region 6594:4905 - contained in read 202548 0- 6511 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21/113047. Annotated with 523 overlaps. Scan reads to discard spanned repeats. discard region 23685:24808 - contained in read 230236 20572- 28520 thickest edges to the repeat regions: saved region 25079:33062 - closest 5' read 577897 ( +2817) 22262:32876 ( -186) saved region 25079:33062 - closest 3' read 659105 ( -3704) 28783:34699 ( +1637) saved region 47462:49177 - closest 5' read 695196 ( +2791) 44671:48900 ( -277) saved region 47462:49177 - closest 3' read 220012 ( -55) 47517:51036 ( +1859) search for confused edges: tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 38946 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1218 erate 0.0642 score 1139.80 - absdiff 1785.21 percdiff 87.8372 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 38947 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1222 erate 0.0621 score 1146.11 - absdiff 1778.90 percdiff 87.3911 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 107874 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2609 erate 0.0556 score 2463.94 - absdiff 461.08 percdiff 17.1119 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 426493 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1684 erate 0.0506 score 1598.79 - absdiff 1326.23 percdiff 58.6332 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 426494 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1669 erate 0.0557 score 1576.04 - absdiff 1348.98 percdiff 59.9406 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 603098 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2628 erate 0.0606 score 2468.74 - absdiff 456.27 percdiff 16.9185 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 622511 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2639 erate 0.0542 score 2495.97 - absdiff 429.05 percdiff 15.8292 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 622512 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2674 erate 0.0419 score 2561.96 - absdiff 363.06 percdiff 13.2334 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 642771 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1064 erate 0.0623 score 997.71 - absdiff 1927.30 percdiff 98.2634 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 642772 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1057 erate 0.0567 score 997.07 - absdiff 1927.95 percdiff 98.3124 tig 21 read 695195 pos 43637-48898 IS confused by 3' edge to read 133949 - best edge read 220012 len 1402 erate 0.0680 score 1306.66 - alt edge len 1337 erate 0.0682 score 1245.82 - absdiff 60.85 percdiff 4.7677 tig 21 read 695195 pos 43637-48898 IS confused by 3' edge to read 311428 - best edge read 220012 len 1402 erate 0.0680 score 1306.66 - alt edge len 633 erate 0.0488 score 602.11 - absdiff 704.55 percdiff 73.8227 tig 21 read 695195 pos 43637-48898 IS confused by 3' edge to read 591265 - best edge read 220012 len 1402 erate 0.0680 score 1306.66 - alt edge len 658 erate 0.0592 score 619.05 - absdiff 687.62 percdiff 71.4144 saved region 25079:33062 - 10 best edges are potentially confused saved region 47462:49177 - 3 best edges are potentially confused break tig 21 into up to 5 pieces: 0 24579 unique (length 24579) 24579 33562 repeat (length 8983) 33562 46962 unique (length 13400) 46962 49677 repeat (length 2715) 49677 51036 unique (length 1359) Creating Unitig 113068 Creating Unitig 113069 Creating Unitig 113070 Creating Unitig 113071 For tig 21 unique region 0 24579 - 0/ 42 reads repeat/unique - unitig 113068 created. For tig 21 repeat region 24579 33562 - 13/ 0 reads repeat/unique - unitig 113069 created. For tig 21 unique region 33562 46962 - 0/ 16 reads repeat/unique - unitig 113070 created. For tig 21 repeat region 46962 49677 - 0/ 0 repeat/unique reads - no new unitig created. For tig 21 unique region 49677 51036 - 0/ 3 reads repeat/unique - unitig 113071 created. Annotating repeats in reads for tig 23/113047. Annotated with 3085 overlaps. Scan reads to discard spanned repeats. discard region 42228:40743 - contained in read 516397 36996- 45081 thickest edges to the repeat regions: saved region 5668:39210 - closest 5' read 692155 ( +0) 5668:16182 (-23028) saved region 5668:39210 - closest 3' read 247879 (-24346) 30014:39210 ( +0) saved region 44484:45181 - closest 5' read 516394 ( +7452) 37032:45162 ( -19) saved region 44484:45181 - closest 3' read 615225 ( -141) 44625:50449 ( +5268) search for confused edges: tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 35386 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1836 erate 0.0586 score 1728.41 - absdiff 4906.38 percdiff 117.3326 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 35387 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1834 erate 0.0589 score 1725.98 - absdiff 4908.81 percdiff 117.4250 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 231909 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1591 erate 0.0621 score 1492.20 - absdiff 5142.59 percdiff 126.5559 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 231910 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1604 erate 0.0700 score 1491.72 - absdiff 5143.07 percdiff 126.5751 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 489155 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1819 erate 0.0583 score 1712.95 - absdiff 4921.84 percdiff 117.9202 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 600399 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1729 erate 0.0721 score 1604.34 - absdiff 5030.45 percdiff 122.1112 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 677214 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 2571 erate 0.0526 score 2435.77 - absdiff 4199.03 percdiff 92.5859 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 109123 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1863 erate 0.0625 score 1746.56 - absdiff 4868.59 percdiff 116.4495 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 109124 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1871 erate 0.0553 score 1767.53 - absdiff 4847.62 percdiff 115.6578 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 221189 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1532 erate 0.0647 score 1432.88 - absdiff 5182.27 percdiff 128.7836 tig 23 read 464866 pos 6327-20337 NOT confused by 3' edge to read 247879 - best edge read 464864 len 10434 erate 0.0280 score 10141.85 - alt edge len 6398 erate 0.0721 score 5936.70 - absdiff 4205.14 percdiff 52.3075 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 323775 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 3076 erate 0.0440 score 2940.66 - absdiff 3674.49 percdiff 76.9060 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 323778 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 3096 erate 0.0440 score 2959.78 - absdiff 3655.37 percdiff 76.3530 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 323779 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 3077 erate 0.0433 score 2943.77 - absdiff 3671.38 percdiff 76.8159 tig 23 read 464866 pos 6327-20337 NOT confused by 3' edge to read 489155 - best edge read 464864 len 10434 erate 0.0280 score 10141.85 - alt edge len 4769 erate 0.0557 score 4503.37 - absdiff 5638.48 percdiff 77.0010 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 600399 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 2580 erate 0.0723 score 2393.47 - absdiff 4221.68 percdiff 93.7255 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 635145 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 4545 erate 0.0679 score 4236.39 - absdiff 2378.75 percdiff 43.8418 tig 23 read 464866 pos 6327-20337 NOT confused by 3' edge to read 677214 - best edge read 464864 len 10434 erate 0.0280 score 10141.85 - alt edge len 1929 erate 0.0653 score 1803.04 - absdiff 8338.81 percdiff 139.6215 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 685153 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1511 erate 0.0531 score 1430.77 - absdiff 5184.38 percdiff 128.8699 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 247879 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 2247 erate 0.0573 score 2118.25 - absdiff 4656.84 percdiff 104.7265 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 372708 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 2294 erate 0.0728 score 2127.00 - absdiff 4648.09 percdiff 104.4270 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 615224 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 537 erate 0.0678 score 500.59 - absdiff 6274.50 percdiff 172.4786 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 615225 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 533 erate 0.0675 score 497.02 - absdiff 6278.06 percdiff 172.6614 tig 23 read 506396 pos 7535-15123 IS confused by 3' edge to read 28114 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 2484 erate 0.0543 score 2349.12 - absdiff 1193.49 percdiff 40.5141 tig 23 read 506396 pos 7535-15123 IS confused by 3' edge to read 28117 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 2455 erate 0.0617 score 2303.53 - absdiff 1239.08 percdiff 42.3898 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 34339 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1157 erate 0.0693 score 1076.82 - absdiff 2465.79 percdiff 106.7573 tig 23 read 506396 pos 7535-15123 NOT confused by 5' edge to read 247879 - best edge read 692155 len 7290 erate 0.0440 score 6969.24 - alt edge len 2263 erate 0.0512 score 2147.13 - absdiff 4822.11 percdiff 105.7900 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 372708 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1121 erate 0.0672 score 1045.67 - absdiff 2496.94 percdiff 108.8400 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 464241 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1097 erate 0.0671 score 1023.39 - absdiff 2519.22 percdiff 110.3468 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 464242 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1098 erate 0.0699 score 1021.25 - absdiff 2521.36 percdiff 110.4924 tig 23 read 506396 pos 7535-15123 NOT confused by 5' edge to read 677214 - best edge read 692155 len 7290 erate 0.0440 score 6969.24 - alt edge len 1385 erate 0.0437 score 1324.48 - absdiff 5644.76 percdiff 136.1215 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 691345 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1050 erate 0.0600 score 987.00 - absdiff 2555.61 percdiff 112.8402 tig 23 read 464864 pos 7605-19059 NOT confused by 5' edge to read 28114 - best edge read 464866 len 10441 erate 0.0280 score 10148.65 - alt edge len 1287 erate 0.0539 score 1217.63 - absdiff 8931.02 percdiff 157.1494 tig 23 read 464864 pos 7605-19059 NOT confused by 5' edge to read 28117 - best edge read 464866 len 10441 erate 0.0280 score 10148.65 - alt edge len 1257 erate 0.0653 score 1174.92 - absdiff 8973.73 percdiff 158.4966 tig 23 read 464864 pos 7605-19059 NOT confused by 3' edge to read 34339 - best edge read 464865 len 10944 erate 0.0296 score 10620.06 - alt edge len 1033 erate 0.0691 score 961.62 - absdiff 9658.44 percdiff 166.7882 tig 23 read 464864 pos 7605-19059 NOT confused by 3' edge to read 35386 - best edge read 464865 len 10944 erate 0.0296 score 10620.06 - alt edge len 1967 erate 0.0722 score 1824.98 - absdiff 8795.08 percdiff 141.3427 tig 23 read 464864 pos 7605-19059 NOT confused by 5' edge to read 489155 - best edge read 464866 len 10441 erate 0.0280 score 10148.65 - alt edge len 3441 erate 0.0569 score 3245.21 - absdiff 6903.44 percdiff 103.0837 tig 23 read 464864 pos 7605-19059 NOT confused by 3' edge to read 677214 - best edge read 464865 len 10944 erate 0.0296 score 10620.06 - alt edge len 2705 erate 0.0555 score 2554.87 - absdiff 8065.19 percdiff 122.4323 tig 23 read 447227 pos 7791-14995 IS confused by 3' edge to read 247879 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 2259 erate 0.0552 score 2134.30 - absdiff 1407.90 percdiff 49.6044 tig 23 read 447227 pos 7791-14995 NOT confused by 5' edge to read 373858 - best edge read 447228 len 7013 erate 0.0342 score 6773.16 - alt edge len 708 erate 0.0710 score 657.73 - absdiff 6115.42 percdiff 164.5947 tig 23 read 447227 pos 7791-14995 NOT confused by 5' edge to read 575114 - best edge read 447228 len 7013 erate 0.0342 score 6773.16 - alt edge len 671 erate 0.0586 score 631.68 - absdiff 6141.48 percdiff 165.8775 tig 23 read 447227 pos 7791-14995 NOT confused by 3' edge to read 615224 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 538 erate 0.0688 score 500.99 - absdiff 3041.22 percdiff 150.4366 tig 23 read 447227 pos 7791-14995 NOT confused by 3' edge to read 615225 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 535 erate 0.0748 score 494.98 - absdiff 3047.22 percdiff 150.9577 tig 23 read 447227 pos 7791-14995 NOT confused by 5' edge to read 645307 - best edge read 447228 len 7013 erate 0.0342 score 6773.16 - alt edge len 579 erate 0.0557 score 546.75 - absdiff 6226.41 percdiff 170.1226 tig 23 read 447227 pos 7791-14995 NOT confused by 3' edge to read 677214 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 1379 erate 0.0666 score 1287.16 - absdiff 2255.04 percdiff 93.3889 tig 23 read 464865 pos 8076-19385 IS confused by 5' edge to read 247879 - best edge read 519267 len 7214 erate 0.0495 score 6856.91 - alt edge len 5533 erate 0.0682 score 5155.65 - absdiff 1701.26 percdiff 28.3247 tig 23 read 464865 pos 8076-19385 NOT confused by 5' edge to read 489155 - best edge read 519267 len 7214 erate 0.0495 score 6856.91 - alt edge len 3895 erate 0.0476 score 3709.60 - absdiff 3147.31 percdiff 59.5714 tig 23 read 464865 pos 8076-19385 NOT confused by 5' edge to read 677214 - best edge read 519267 len 7214 erate 0.0495 score 6856.91 - alt edge len 2859 erate 0.0485 score 2720.34 - absdiff 4136.57 percdiff 86.3833 tig 23 read 54638 pos 8112-13942 IS confused by 3' edge to read 34339 - best edge read 180946 len 2614 erate 0.0693 score 2432.85 - alt edge len 2238 erate 0.0630 score 2097.01 - absdiff 335.84 percdiff 14.8280 tig 23 read 54638 pos 8112-13942 NOT confused by 5' edge to read 43102 - best edge read 54637 len 5696 erate 0.0340 score 5502.34 - alt edge len 1086 erate 0.0427 score 1039.63 - absdiff 4462.71 percdiff 136.4333 tig 23 read 54638 pos 8112-13942 NOT confused by 5' edge to read 362081 - best edge read 54637 len 5696 erate 0.0340 score 5502.34 - alt edge len 764 erate 0.0468 score 728.24 - absdiff 4774.09 percdiff 153.2471 tig 23 read 54638 pos 8112-13942 NOT confused by 5' edge to read 600399 - best edge read 54637 len 5696 erate 0.0340 score 5502.34 - alt edge len 858 erate 0.0562 score 809.78 - absdiff 4692.56 percdiff 148.6841 tig 23 read 54638 pos 8112-13942 IS confused by 3' edge to read 645307 - best edge read 180946 len 2614 erate 0.0693 score 2432.85 - alt edge len 692 erate 0.0350 score 667.78 - absdiff 1765.07 percdiff 113.8523 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 34339 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 2180 erate 0.0597 score 2049.85 - absdiff 3534.60 percdiff 92.5978 tig 23 read 54635 pos 8170-14133 IS confused by 3' edge to read 43102 - best edge read 447228 len 1747 erate 0.0650 score 1633.45 - alt edge len 1270 erate 0.0505 score 1205.87 - absdiff 427.58 percdiff 30.1186 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 109124 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 767 erate 0.0678 score 715.00 - absdiff 4869.45 percdiff 154.5994 tig 23 read 54635 pos 8170-14133 IS confused by 3' edge to read 362081 - best edge read 447228 len 1747 erate 0.0650 score 1633.45 - alt edge len 955 erate 0.0432 score 913.74 - absdiff 719.70 percdiff 56.5094 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 373858 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 756 erate 0.0741 score 699.98 - absdiff 4884.47 percdiff 155.4467 tig 23 read 54635 pos 8170-14133 IS confused by 3' edge to read 600399 - best edge read 447228 len 1747 erate 0.0650 score 1633.45 - alt edge len 1044 erate 0.0690 score 971.96 - absdiff 661.48 percdiff 50.7775 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 645307 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 645 erate 0.0343 score 622.88 - absdiff 4961.58 percdiff 159.8619 tig 23 read 54637 pos 9302-15292 NOT confused by 5' edge to read 34339 - best edge read 54638 len 5665 erate 0.0340 score 5472.39 - alt edge len 2206 erate 0.0621 score 2069.01 - absdiff 3403.38 percdiff 90.2587 tig 23 read 54637 pos 9302-15292 NOT confused by 3' edge to read 43102 - best edge read 54635 len 5813 erate 0.0360 score 5603.73 - alt edge len 1273 erate 0.0544 score 1203.75 - absdiff 4399.98 percdiff 129.2691 tig 23 read 54637 pos 9302-15292 NOT confused by 3' edge to read 362081 - best edge read 54635 len 5813 erate 0.0360 score 5603.73 - alt edge len 953 erate 0.0612 score 894.68 - absdiff 4709.06 percdiff 144.9295 tig 23 read 54637 pos 9302-15292 NOT confused by 5' edge to read 645307 - best edge read 54638 len 5665 erate 0.0340 score 5472.39 - alt edge len 683 erate 0.0265 score 664.90 - absdiff 4807.49 percdiff 156.6649 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 43102 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 586 erate 0.0563 score 553.01 - absdiff 6404.65 percdiff 170.5481 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 105585 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 606 erate 0.0495 score 576.00 - absdiff 6381.66 percdiff 169.4171 tig 23 read 519267 pos 12263-21382 IS confused by 5' edge to read 109123 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 5316 erate 0.0392 score 5107.61 - absdiff 1850.05 percdiff 30.6673 tig 23 read 519267 pos 12263-21382 IS confused by 5' edge to read 109124 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 5322 erate 0.0379 score 5120.30 - absdiff 1837.36 percdiff 30.4251 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 221189 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1363 erate 0.0661 score 1272.91 - absdiff 5684.75 percdiff 138.1376 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 229783 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 3043 erate 0.0532 score 2881.11 - absdiff 4076.55 percdiff 82.8670 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 323775 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 2875 erate 0.0407 score 2757.99 - absdiff 4199.67 percdiff 86.4517 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 323778 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1107 erate 0.0361 score 1067.04 - absdiff 5890.62 percdiff 146.8123 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 323779 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1088 erate 0.0322 score 1052.97 - absdiff 5904.69 percdiff 147.4215 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 337500 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1686 erate 0.0593 score 1586.02 - absdiff 5371.64 percdiff 125.7453 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 373858 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1676 erate 0.0573 score 1579.97 - absdiff 5377.69 percdiff 125.9764 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 489155 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1248 erate 0.0521 score 1182.98 - absdiff 5774.68 percdiff 141.8729 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 525367 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1011 erate 0.0437 score 966.82 - absdiff 5990.84 percdiff 151.1983 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 525368 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1003 erate 0.0460 score 956.86 - absdiff 6000.80 percdiff 151.6402 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 525369 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1010 erate 0.0419 score 967.68 - absdiff 5989.98 percdiff 151.1602 tig 23 read 519267 pos 12263-21382 IS confused by 5' edge to read 532038 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 5259 erate 0.0696 score 4892.97 - absdiff 2064.69 percdiff 34.8452 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 600399 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 2381 erate 0.0503 score 2261.24 - absdiff 4696.42 percdiff 101.8869 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 635145 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 2558 erate 0.0504 score 2429.08 - absdiff 4528.58 percdiff 96.4890 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 685153 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1341 erate 0.0485 score 1275.96 - absdiff 5681.70 percdiff 138.0121 tig 23 read 316552 pos 15729-22153 IS confused by 3' edge to read 109124 - best edge read 519267 len 3799 erate 0.0584 score 3577.14 - alt edge len 1989 erate 0.0634 score 1862.90 - absdiff 1714.24 percdiff 63.0232 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 27206 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 898 erate 0.0480 score 854.90 - absdiff 202.91 percdiff 21.2168 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 118005 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 540 erate 0.0564 score 509.54 - absdiff 548.26 percdiff 69.9601 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 698744 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 792 erate 0.0532 score 749.87 - absdiff 307.94 percdiff 34.0700 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 698746 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 796 erate 0.0555 score 751.82 - absdiff 305.98 percdiff 33.8170 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 698749 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 791 erate 0.0622 score 741.80 - absdiff 316.00 percdiff 35.1191 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 27206 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 1902 erate 0.0570 score 1793.59 - absdiff 2466.44 percdiff 81.4865 tig 23 read 337500 pos 24075-30694 IS confused by 5' edge to read 262068 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 4321 erate 0.0555 score 4081.18 - absdiff 178.84 percdiff 4.2881 tig 23 read 337500 pos 24075-30694 IS confused by 5' edge to read 312946 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 2661 erate 0.0664 score 2484.31 - absdiff 1775.71 percdiff 52.6579 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 316552 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 2138 erate 0.0639 score 2001.38 - absdiff 2258.64 percdiff 72.1449 tig 23 read 337500 pos 24075-30694 NOT confused by 3' edge to read 519267 - best edge read 323775 len 6058 erate 0.0612 score 5687.25 - alt edge len 1687 erate 0.0593 score 1586.96 - absdiff 4100.29 percdiff 112.7350 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 698744 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 1796 erate 0.0676 score 1674.59 - absdiff 2585.43 percdiff 87.1306 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 698746 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 1799 erate 0.0664 score 1679.55 - absdiff 2580.48 percdiff 86.8910 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 27206 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1421 erate 0.0592 score 1336.88 - absdiff 5961.80 percdiff 138.0757 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 35386 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1404 erate 0.0467 score 1338.43 - absdiff 5943.24 percdiff 137.8925 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 35387 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1402 erate 0.0464 score 1336.95 - absdiff 5944.72 percdiff 137.9507 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 97301 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1179 erate 0.0554 score 1113.68 - absdiff 6167.98 percdiff 146.9381 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 172031 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 3089 erate 0.0680 score 2878.95 - absdiff 4402.72 percdiff 86.6625 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 231909 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1143 erate 0.0463 score 1090.08 - absdiff 6191.59 percdiff 147.9163 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 231910 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1157 erate 0.0498 score 1099.38 - absdiff 6182.29 percdiff 147.5301 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 262068 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1244 erate 0.0595 score 1169.98 - absdiff 6128.70 percdiff 144.7383 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 316552 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1654 erate 0.0562 score 1561.05 - absdiff 5737.63 percdiff 129.5217 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 379026 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 3087 erate 0.0499 score 2932.96 - absdiff 4348.71 percdiff 85.1467 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 464866 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 3084 erate 0.0433 score 2950.46 - absdiff 4331.21 percdiff 84.6589 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 489155 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1386 erate 0.0573 score 1306.58 - absdiff 5975.09 percdiff 139.1456 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 519267 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1100 erate 0.0322 score 1064.58 - absdiff 6217.09 percdiff 148.9792 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 677214 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 2140 erate 0.0512 score 2030.43 - absdiff 5251.24 percdiff 112.7831 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 698744 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1315 erate 0.0626 score 1232.68 - absdiff 6066.00 percdiff 142.2047 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 698746 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1318 erate 0.0622 score 1236.02 - absdiff 6062.66 percdiff 142.0708 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 698749 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1314 erate 0.0624 score 1232.01 - absdiff 6066.67 percdiff 142.2318 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 27206 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1432 erate 0.0564 score 1351.24 - absdiff 4511.57 percdiff 125.0775 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 35386 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1398 erate 0.0511 score 1326.56 - absdiff 5968.20 percdiff 138.4521 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 35387 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1396 erate 0.0500 score 1326.20 - absdiff 5968.56 percdiff 138.4663 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 172031 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 3128 erate 0.0703 score 2908.10 - absdiff 4386.66 percdiff 85.9888 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 231909 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1143 erate 0.0597 score 1074.76 - absdiff 6220.00 percdiff 148.6345 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 231910 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1157 erate 0.0629 score 1084.22 - absdiff 6210.54 percdiff 148.2408 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 262068 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1253 erate 0.0552 score 1183.83 - absdiff 4678.97 percdiff 132.8001 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 316552 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1665 erate 0.0529 score 1576.92 - absdiff 4285.88 percdiff 115.2162 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 379026 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 3073 erate 0.0505 score 2917.81 - absdiff 4376.95 percdiff 85.7168 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 464866 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 3070 erate 0.0440 score 2934.92 - absdiff 4359.84 percdiff 85.2391 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 489155 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1380 erate 0.0632 score 1292.78 - absdiff 6001.98 percdiff 139.7833 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 519267 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 2906 erate 0.0407 score 2787.73 - absdiff 4507.04 percdiff 89.4033 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 677214 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 2135 erate 0.0545 score 2018.64 - absdiff 5276.12 percdiff 113.3016 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 698744 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1325 erate 0.0618 score 1243.12 - absdiff 4619.69 percdiff 130.0237 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 698746 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1328 erate 0.0589 score 1249.78 - absdiff 4613.03 percdiff 129.7144 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 698749 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1324 erate 0.0607 score 1243.63 - absdiff 4619.17 percdiff 129.9996 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 27206 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1397 erate 0.0569 score 1317.51 - absdiff 5953.37 percdiff 138.6376 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 35386 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1422 erate 0.0489 score 1352.46 - absdiff 1596.04 percdiff 74.2178 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 35387 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1420 erate 0.0493 score 1349.99 - absdiff 1598.51 percdiff 74.3754 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 172031 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 3100 erate 0.0697 score 2883.93 - absdiff 64.58 percdiff 2.2144 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 231909 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1159 erate 0.0472 score 1104.30 - absdiff 1844.21 percdiff 91.0092 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 231910 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1173 erate 0.0507 score 1113.53 - absdiff 1834.98 percdiff 90.3477 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 262068 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1219 erate 0.0566 score 1150.00 - absdiff 6120.88 percdiff 145.3737 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 316552 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1633 erate 0.0551 score 1543.02 - absdiff 5727.86 percdiff 129.9733 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 379026 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 3098 erate 0.0463 score 2954.56 - absdiff 6.05 percdiff 0.2051 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 464866 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 3095 erate 0.0440 score 2958.82 - absdiff 10.31 percdiff 0.3491 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 489155 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1404 erate 0.0608 score 1318.64 - absdiff 1629.87 percdiff 76.3917 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 519267 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1116 erate 0.0361 score 1075.71 - absdiff 1872.80 percdiff 93.0762 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 677214 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 2155 erate 0.0512 score 2044.66 - absdiff 903.84 percdiff 36.2032 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 698744 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1290 erate 0.0625 score 1209.38 - absdiff 6061.51 percdiff 142.9558 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 698746 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1293 erate 0.0588 score 1216.97 - absdiff 6053.91 percdiff 142.6488 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 698749 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1289 erate 0.0613 score 1209.98 - absdiff 6060.90 percdiff 142.9311 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 34339 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1049 erate 0.0510 score 995.50 - absdiff 4143.45 percdiff 135.0879 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 54635 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 778 erate 0.0678 score 725.25 - absdiff 4413.70 percdiff 150.5303 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 172031 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1873 erate 0.0652 score 1750.88 - absdiff 3388.07 percdiff 98.3499 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 231909 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1733 erate 0.0739 score 1604.93 - absdiff 3534.02 percdiff 104.8067 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 231910 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1747 erate 0.0704 score 1624.01 - absdiff 3514.94 percdiff 103.9468 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 316552 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1993 erate 0.0634 score 1866.64 - absdiff 3272.31 percdiff 93.4198 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 379026 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1870 erate 0.0668 score 1745.08 - absdiff 3393.87 percdiff 98.6011 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 464866 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1867 erate 0.0553 score 1763.75 - absdiff 3375.20 percdiff 97.7934 tig 23 read 109124 pos 25426-36711 IS confused by 5' edge to read 489155 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 3827 erate 0.0580 score 3605.03 - absdiff 1533.92 percdiff 35.0851 tig 23 read 109124 pos 25426-36711 IS confused by 5' edge to read 519267 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 5351 erate 0.0379 score 5148.20 - absdiff 9.25 percdiff 0.1797 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 548367 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1879 erate 0.0608 score 1764.76 - absdiff 3374.20 percdiff 97.7502 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 677214 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 2778 erate 0.0677 score 2589.93 - absdiff 2549.02 percdiff 65.9610 tig 23 read 109124 pos 25426-36711 IS confused by 5' edge to read 692155 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 5080 erate 0.0624 score 4763.01 - absdiff 375.94 percdiff 7.5933 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 98375 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 785 erate 0.0651 score 733.90 - absdiff 4405.06 percdiff 150.0143 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 34339 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1046 erate 0.0630 score 980.10 - absdiff 9861.44 percdiff 166.8370 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 98374 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 795 erate 0.0629 score 744.99 - absdiff 10096.55 percdiff 174.2807 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 98375 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 782 erate 0.0525 score 740.95 - absdiff 10100.60 percdiff 174.4115 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 172031 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1871 erate 0.0609 score 1757.06 - absdiff 9084.49 percdiff 144.2142 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 231910 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1742 erate 0.0741 score 1612.92 - absdiff 9228.62 percdiff 148.1979 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 464866 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1869 erate 0.0625 score 1752.19 - absdiff 9089.35 percdiff 144.3473 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 489155 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 3812 erate 0.0656 score 3561.93 - absdiff 7279.61 percdiff 101.0813 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 519267 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 5335 erate 0.0392 score 5125.87 - absdiff 5715.67 percdiff 71.5918 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 548367 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1880 erate 0.0508 score 1784.50 - absdiff 9057.05 percdiff 143.4662 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 692155 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 5065 erate 0.0683 score 4719.06 - absdiff 6122.48 percdiff 78.6921 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 35386 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 865 erate 0.0694 score 804.97 - absdiff 3467.98 percdiff 136.5906 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 35387 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 863 erate 0.0649 score 806.99 - absdiff 3465.96 percdiff 136.4566 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 231909 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 631 erate 0.0618 score 592.00 - absdiff 3680.95 percdiff 151.3250 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 231910 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 645 erate 0.0651 score 603.01 - absdiff 3669.94 percdiff 150.5320 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 362081 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 667 erate 0.0660 score 622.98 - absdiff 3649.97 percdiff 149.1024 tig 23 read 600399 pos 29537-35622 IS confused by 3' edge to read 464866 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 2516 erate 0.0723 score 2334.09 - absdiff 1938.86 percdiff 58.6906 tig 23 read 600399 pos 29537-35622 IS confused by 3' edge to read 489155 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 2641 erate 0.0576 score 2488.88 - absdiff 1784.07 percdiff 52.7689 tig 23 read 600399 pos 29537-35622 IS confused by 3' edge to read 519267 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 2365 erate 0.0503 score 2246.04 - absdiff 2026.91 percdiff 62.1848 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 677214 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 1596 erate 0.0602 score 1499.92 - absdiff 2773.03 percdiff 96.0711 tig 23 read 516392 pos 37020-45156 IS confused by 3' edge to read 35387 - best edge read 615224 len 503 erate 0.0736 score 465.98 - alt edge len 610 erate 0.0667 score 569.31 - absdiff 103.33 percdiff 19.9622 saved region 5668:39210 - 36 best edges are potentially confused saved region 44484:45181 - 1 best edges are potentially confused break tig 23 into up to 5 pieces: 0 5168 unique (length 5168) 5168 39710 repeat (length 34542) 39710 43984 unique (length 4274) 43984 45681 repeat (length 1697) 45681 50456 unique (length 4775) Creating Unitig 113072 Creating Unitig 113073 Creating Unitig 113074 Creating Unitig 113075 For tig 23 unique region 0 5168 - 0/ 2 reads repeat/unique - unitig 113072 created. For tig 23 repeat region 5168 39710 - 237/ 0 reads repeat/unique - unitig 113073 created. For tig 23 unique region 39710 43984 - 0/ 11 reads repeat/unique - unitig 113074 created. For tig 23 repeat region 43984 45681 - 0/ 0 repeat/unique reads - no new unitig created. For tig 23 unique region 45681 50456 - 0/ 3 reads repeat/unique - unitig 113075 created. Annotating repeats in reads for tig 24/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 2392:11329 - contained in read 626321 1536- 11329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 0:972 - contained in read 666017 0- 5044 thickest edges to the repeat regions: saved region 3425:5074 - closest 5' read 167634 ( +2369) 1056:5071 ( -3) saved region 3425:5074 - closest 3' read 37008 ( -171) 3596:9087 ( +4013) saved region 7034:15046 - closest read 69290 ( +0) 7034:15319 ( +273) (contained) saved region 7034:15046 - closest 5' read 69290 ( +0) 7034:15319 ( +273) saved region 7034:15046 - closest 3' read 69290 ( +0) 7034:15319 ( +273) search for confused edges: tig 25 read 37008 pos 3596-9087 IS confused by 5' edge to read 379302 - best edge read 167634 len 1458 erate 0.0510 score 1383.64 - alt edge len 568 erate 0.0408 score 544.83 - absdiff 838.82 percdiff 86.9931 tig 25 read 37008 pos 3596-9087 IS confused by 5' edge to read 680265 - best edge read 167634 len 1458 erate 0.0510 score 1383.64 - alt edge len 593 erate 0.0292 score 575.68 - absdiff 807.96 percdiff 82.4730 tig 25 read 37008 pos 3596-9087 IS confused by 5' edge to read 711493 - best edge read 167634 len 1458 erate 0.0510 score 1383.64 - alt edge len 757 erate 0.0213 score 740.88 - absdiff 642.77 percdiff 60.5094 saved region 3425:5074 - 3 best edges are potentially confused discard region 7034:15046 - no confusion in best edges break tig 25 into up to 3 pieces: 0 2925 unique (length 2925) 2925 5574 repeat (length 2649) 5574 18148 unique (length 12574) Creating Unitig 113076 Creating Unitig 113077 Creating Unitig 113078 For tig 25 unique region 0 2925 - 0/ 2 reads repeat/unique - unitig 113076 created. For tig 25 repeat region 2925 5574 - 3/ 0 reads repeat/unique - unitig 113077 created. For tig 25 unique region 5574 18148 - 0/ 25 reads repeat/unique - unitig 113078 created. Annotating repeats in reads for tig 26/113047. Annotated with 103 overlaps. Scan reads to discard spanned repeats. discard region 15678:16599 - contained in read 618395 10106- 18261 discard region 35455:36979 - contained in read 483357 30875- 40751 thickest edges to the repeat regions: saved region 18303:34365 - closest 5' read 144668 ( +1161) 17142:24626 ( -9739) saved region 18303:34365 - closest 3' read 379302 ( -9400) 27703:36019 ( +1654) search for confused edges: tig 26 read 626844 pos 16677-23613 IS confused by 5' edge to read 289826 - best edge read 331845 len 4752 erate 0.0636 score 4449.77 - alt edge len 3045 erate 0.0514 score 2888.49 - absdiff 1561.29 percdiff 42.5519 tig 26 read 626844 pos 16677-23613 IS confused by 5' edge to read 289828 - best edge read 331845 len 4752 erate 0.0636 score 4449.77 - alt edge len 3044 erate 0.0532 score 2882.06 - absdiff 1567.71 percdiff 42.7646 tig 26 read 331845 pos 18756-28002 IS confused by 3' edge to read 289826 - best edge read 356402 len 8612 erate 0.0464 score 8212.40 - alt edge len 7335 erate 0.0493 score 6973.38 - absdiff 1239.02 percdiff 16.3181 tig 26 read 331845 pos 18756-28002 IS confused by 3' edge to read 289828 - best edge read 356402 len 8612 erate 0.0464 score 8212.40 - alt edge len 7334 erate 0.0492 score 6973.17 - absdiff 1239.24 percdiff 16.3212 tig 26 read 356402 pos 19257-28029 NOT confused by 5' edge to read 34066 - best edge read 356403 len 8604 erate 0.0072 score 8542.05 - alt edge len 1925 erate 0.0435 score 1841.26 - absdiff 6700.79 percdiff 129.0684 tig 26 read 356402 pos 19257-28029 IS confused by 3' edge to read 80006 - best edge read 331845 len 8462 erate 0.0464 score 8069.36 - alt edge len 7975 erate 0.0292 score 7742.13 - absdiff 327.23 percdiff 4.1392 tig 26 read 356402 pos 19257-28029 IS confused by 5' edge to read 289826 - best edge read 356403 len 8604 erate 0.0072 score 8542.05 - alt edge len 7344 erate 0.0130 score 7248.53 - absdiff 1293.52 percdiff 16.3835 tig 26 read 356402 pos 19257-28029 IS confused by 5' edge to read 289828 - best edge read 356403 len 8604 erate 0.0072 score 8542.05 - alt edge len 7343 erate 0.0137 score 7242.40 - absdiff 1299.65 percdiff 16.4675 tig 26 read 356402 pos 19257-28029 NOT confused by 3' edge to read 574084 - best edge read 331845 len 8462 erate 0.0464 score 8069.36 - alt edge len 2601 erate 0.0214 score 2545.34 - absdiff 5524.02 percdiff 104.0825 tig 26 read 356403 pos 19273-28107 NOT confused by 3' edge to read 34066 - best edge read 232970 len 8312 erate 0.0415 score 7967.05 - alt edge len 2005 erate 0.0474 score 1909.96 - absdiff 6057.09 percdiff 122.6502 tig 26 read 356403 pos 19273-28107 IS confused by 5' edge to read 80006 - best edge read 356402 len 8612 erate 0.0072 score 8549.99 - alt edge len 7961 erate 0.0261 score 7753.22 - absdiff 796.78 percdiff 9.7745 tig 26 read 356403 pos 19273-28107 IS confused by 3' edge to read 289826 - best edge read 232970 len 8312 erate 0.0415 score 7967.05 - alt edge len 7427 erate 0.0124 score 7334.91 - absdiff 632.15 percdiff 8.2623 tig 26 read 356403 pos 19273-28107 IS confused by 3' edge to read 289828 - best edge read 232970 len 8312 erate 0.0415 score 7967.05 - alt edge len 7426 erate 0.0123 score 7334.66 - absdiff 632.39 percdiff 8.2656 tig 26 read 356403 pos 19273-28107 NOT confused by 5' edge to read 574084 - best edge read 356402 len 8612 erate 0.0072 score 8549.99 - alt edge len 2579 erate 0.0175 score 2533.87 - absdiff 6016.13 percdiff 108.5565 tig 26 read 639956 pos 19362-31919 IS confused by 3' edge to read 34069 - best edge read 379302 len 3413 erate 0.0161 score 3358.05 - alt edge len 2987 erate 0.0204 score 2926.07 - absdiff 431.99 percdiff 13.7485 tig 26 read 639956 pos 19362-31919 IS confused by 5' edge to read 574084 - best edge read 626844 len 3320 erate 0.0680 score 3094.24 - alt edge len 1716 erate 0.0252 score 1672.76 - absdiff 1421.48 percdiff 59.6385 tig 26 read 232970 pos 19668-29851 NOT confused by 3' edge to read 34069 - best edge read 100341 len 8542 erate 0.0116 score 8442.91 - alt edge len 1791 erate 0.0351 score 1728.14 - absdiff 6714.78 percdiff 132.0371 tig 26 read 232970 pos 19668-29851 IS confused by 5' edge to read 80006 - best edge read 356403 len 8211 erate 0.0414 score 7871.06 - alt edge len 7615 erate 0.0307 score 7381.22 - absdiff 489.85 percdiff 6.4232 tig 26 read 232970 pos 19668-29851 NOT confused by 5' edge to read 574084 - best edge read 356403 len 8211 erate 0.0414 score 7871.06 - alt edge len 2212 erate 0.0246 score 2157.58 - absdiff 5713.48 percdiff 113.9432 tig 26 read 100341 pos 21236-30569 NOT confused by 3' edge to read 34069 - best edge read 270999 len 8792 erate 0.0115 score 8690.89 - alt edge len 2461 erate 0.0200 score 2411.78 - absdiff 6279.11 percdiff 113.1099 tig 26 read 100341 pos 21236-30569 NOT confused by 5' edge to read 80006 - best edge read 232970 len 8509 erate 0.0116 score 8410.30 - alt edge len 6109 erate 0.0321 score 5912.90 - absdiff 2497.39 percdiff 34.8720 tig 26 read 100341 pos 21236-30569 NOT confused by 5' edge to read 574084 - best edge read 232970 len 8509 erate 0.0116 score 8410.30 - alt edge len 723 erate 0.0181 score 709.91 - absdiff 7700.38 percdiff 168.8641 tig 26 read 270999 pos 21658-32135 IS confused by 3' edge to read 34069 - best edge read 379302 len 4424 erate 0.0352 score 4268.28 - alt edge len 3996 erate 0.0328 score 3864.93 - absdiff 403.34 percdiff 9.9184 tig 26 read 270999 pos 21658-32135 NOT confused by 5' edge to read 80006 - best edge read 100341 len 8769 erate 0.0115 score 8668.16 - alt edge len 5686 erate 0.0380 score 5469.93 - absdiff 3198.22 percdiff 45.2427 tig 26 read 379302 pos 27703-36019 IS confused by 5' edge to read 599837 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 4185 erate 0.0165 score 4115.95 - absdiff 82.86 percdiff 1.9931 tig 26 read 379302 pos 27703-36019 IS confused by 5' edge to read 643002 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 2556 erate 0.0188 score 2507.95 - absdiff 1690.86 percdiff 50.4227 tig 26 read 379302 pos 27703-36019 IS confused by 5' edge to read 643003 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 2560 erate 0.0160 score 2519.04 - absdiff 1679.77 percdiff 50.0091 tig 26 read 379302 pos 27703-36019 NOT confused by 5' edge to read 692570 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 1328 erate 0.0181 score 1303.96 - absdiff 2894.85 percdiff 105.2141 saved region 18303:34365 - 17 best edges are potentially confused break tig 26 into up to 3 pieces: 0 17803 unique (length 17803) 17803 34865 repeat (length 17062) 34865 47615 unique (length 12750) Creating Unitig 113079 Creating Unitig 113080 Creating Unitig 113081 For tig 26 unique region 0 17803 - 0/ 169 reads repeat/unique - unitig 113079 created. For tig 26 repeat region 17803 34865 - 161/ 0 reads repeat/unique - unitig 113080 created. For tig 26 unique region 34865 47615 - 0/ 13 reads repeat/unique - unitig 113081 created. Annotating repeats in reads for tig 29/113047. Annotated with 471 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9415 - closest 5' read 672762 ( +0) 0:7180 ( -2235) saved region 0:9415 - closest 3' read 539919 ( -2388) 2388:9415 ( +0) search for confused edges: tig 29 read 718181 pos 2437-13286 IS confused by 3' edge to read 17199 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 5443 erate 0.0335 score 5260.66 - absdiff 676.58 percdiff 12.0841 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 36062 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 653 erate 0.0720 score 605.98 - absdiff 5331.26 percdiff 162.9550 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 250405 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 3144 erate 0.0369 score 3027.99 - absdiff 2909.26 percdiff 64.9009 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 287455 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2771 erate 0.0495 score 2633.84 - absdiff 3303.41 percdiff 77.0826 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 287457 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2805 erate 0.0549 score 2651.01 - absdiff 3286.24 percdiff 76.5287 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 327420 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2777 erate 0.0659 score 2594.00 - absdiff 3343.25 percdiff 78.3766 tig 29 read 718181 pos 2437-13286 IS confused by 3' edge to read 472038 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 4799 erate 0.0387 score 4613.28 - absdiff 1323.96 percdiff 25.0976 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 563229 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2472 erate 0.0336 score 2388.94 - absdiff 3548.30 percdiff 85.2324 tig 29 read 718181 pos 2437-13286 IS confused by 3' edge to read 563230 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 5250 erate 0.0402 score 5038.95 - absdiff 898.29 percdiff 16.3680 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 653348 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 3461 erate 0.0480 score 3294.87 - absdiff 2642.37 percdiff 57.2430 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 691283 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 3680 erate 0.0583 score 3465.46 - absdiff 2471.79 percdiff 52.5761 saved region 0:9415 - 3 best edges are potentially confused break tig 29 into up to 2 pieces: 0 9915 repeat (length 9915) 9915 25919 unique (length 16004) Creating Unitig 113082 Creating Unitig 113083 For tig 29 repeat region 0 9915 - 28/ 0 reads repeat/unique - unitig 113082 created. For tig 29 unique region 9915 25919 - 0/ 14 reads repeat/unique - unitig 113083 created. Annotating repeats in reads for tig 30/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 0:6952 - contained in read 547485 0- 9812 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33/113047. Annotated with 1164 overlaps. Scan reads to discard spanned repeats. discard region 28952:31292 - contained in read 533613 27669- 32291 thickest edges to the repeat regions: saved region 6235:23655 - closest 5' read 510754 ( +4705) 1530:14933 ( -8722) saved region 6235:23655 - closest 3' read 118971 (-10395) 16630:24783 ( +1128) search for confused edges: tig 33 read 510754 pos 1530-14933 IS confused by 5' edge to read 98427 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 6383 erate 0.0484 score 6074.06 - absdiff 534.68 percdiff 8.4316 tig 33 read 510754 pos 1530-14933 IS confused by 5' edge to read 132715 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 6214 erate 0.0509 score 5897.71 - absdiff 711.04 percdiff 11.3707 tig 33 read 510754 pos 1530-14933 NOT confused by 5' edge to read 283236 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 562 erate 0.0505 score 533.62 - absdiff 6075.13 percdiff 170.1153 tig 33 read 510754 pos 1530-14933 IS confused by 5' edge to read 421121 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 4831 erate 0.0520 score 4579.79 - absdiff 2028.96 percdiff 36.2685 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 24956 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 4678 erate 0.0457 score 4464.22 - absdiff 2156.19 percdiff 38.9041 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 36467 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 3561 erate 0.0466 score 3395.06 - absdiff 3333.59 percdiff 65.8572 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 98427 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 6598 erate 0.0291 score 6406.00 - absdiff 214.40 percdiff 3.2918 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 119745 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 2214 erate 0.0592 score 2082.93 - absdiff 4537.47 percdiff 104.2697 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 132715 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 6425 erate 0.0298 score 6233.53 - absdiff 386.87 percdiff 6.0194 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 260673 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 2759 erate 0.0548 score 2607.81 - absdiff 4012.60 percdiff 86.9637 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 377979 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 3961 erate 0.0425 score 3792.66 - absdiff 2935.99 percdiff 55.8104 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 421121 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 5046 erate 0.0367 score 4860.81 - absdiff 1759.59 percdiff 30.6516 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 505572 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 4569 erate 0.0649 score 4272.47 - absdiff 2456.18 percdiff 44.6532 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 505574 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 4559 erate 0.0668 score 4254.46 - absdiff 2474.19 percdiff 45.0545 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 542862 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 5218 erate 0.0694 score 4855.87 - absdiff 1764.53 percdiff 30.7510 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 550563 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 2117 erate 0.0519 score 2007.13 - absdiff 4613.27 percdiff 106.9431 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 621498 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 1748 erate 0.0615 score 1640.50 - absdiff 5088.15 percdiff 121.5931 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 24956 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 4668 erate 0.0458 score 4454.21 - absdiff 1908.46 percdiff 35.2867 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 36467 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 2760 erate 0.0474 score 2629.18 - absdiff 4004.75 percdiff 86.4668 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 98427 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 6606 erate 0.0301 score 6407.16 - absdiff 44.50 percdiff 0.6969 tig 33 read 98426 pos 7708-14655 NOT confused by 5' edge to read 119745 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 2208 erate 0.0569 score 2082.36 - absdiff 4280.30 percdiff 101.3685 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 132715 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 6432 erate 0.0312 score 6231.32 - absdiff 131.34 percdiff 2.0858 tig 33 read 98426 pos 7708-14655 NOT confused by 5' edge to read 260673 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 2744 erate 0.0523 score 2600.49 - absdiff 3762.18 percdiff 83.9476 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 377979 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 3477 erate 0.0480 score 3310.10 - absdiff 3323.83 percdiff 66.8506 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 421121 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 5035 erate 0.0371 score 4848.20 - absdiff 1514.46 percdiff 27.0178 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 505572 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 4088 erate 0.0426 score 3913.85 - absdiff 2720.08 percdiff 51.5763 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 505574 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 3765 erate 0.0458 score 3592.56 - absdiff 3041.37 percdiff 59.4801 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 542862 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 5209 erate 0.0655 score 4867.81 - absdiff 1494.85 percdiff 26.6214 tig 33 read 98426 pos 7708-14655 NOT confused by 5' edge to read 550563 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 2113 erate 0.0485 score 2010.52 - absdiff 4352.14 percdiff 103.9544 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 36467 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3209 erate 0.0293 score 3114.98 - absdiff 3512.12 percdiff 72.1021 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 283236 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 2461 erate 0.0428 score 2355.67 - absdiff 3676.21 percdiff 87.6588 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 283237 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 1861 erate 0.0662 score 1737.80 - absdiff 4294.08 percdiff 110.5342 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 377979 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3611 erate 0.0327 score 3492.92 - absdiff 3134.18 percdiff 61.9401 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 483829 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3220 erate 0.0649 score 3011.02 - absdiff 3616.07 percdiff 75.0369 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 483830 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3227 erate 0.0617 score 3027.89 - absdiff 3599.20 percdiff 74.5563 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 505572 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3284 erate 0.0277 score 3193.03 - absdiff 3434.06 percdiff 69.9393 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 505574 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3902 erate 0.0298 score 3785.72 - absdiff 2841.38 percdiff 54.5746 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 578688 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 1553 erate 0.0509 score 1473.95 - absdiff 4557.93 percdiff 121.4503 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 578689 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 1554 erate 0.0438 score 1485.93 - absdiff 4545.95 percdiff 120.9379 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 621497 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 1392 erate 0.0603 score 1308.06 - absdiff 5319.03 percdiff 134.0624 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 621498 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 1397 erate 0.0544 score 1321.00 - absdiff 5306.09 percdiff 133.5185 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 36467 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3283 erate 0.0220 score 3210.77 - absdiff 3121.59 percdiff 65.4206 tig 33 read 660755 pos 8247-15212 IS confused by 3' edge to read 98427 - best edge read 349670 len 6808 erate 0.0260 score 6630.99 - alt edge len 6708 erate 0.0583 score 6316.92 - absdiff 314.07 percdiff 4.8513 tig 33 read 660755 pos 8247-15212 NOT confused by 3' edge to read 283236 - best edge read 349670 len 6808 erate 0.0260 score 6630.99 - alt edge len 864 erate 0.0376 score 831.51 - absdiff 5799.48 percdiff 155.4298 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 377979 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3681 erate 0.0245 score 3590.82 - absdiff 2741.55 percdiff 55.2554 tig 33 read 660755 pos 8247-15212 IS confused by 3' edge to read 421121 - best edge read 349670 len 6808 erate 0.0260 score 6630.99 - alt edge len 5147 erate 0.0665 score 4804.72 - absdiff 1826.27 percdiff 31.9397 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 483829 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 2667 erate 0.0547 score 2521.12 - absdiff 3811.25 percdiff 86.0961 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 483830 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3301 erate 0.0498 score 3136.61 - absdiff 3195.75 percdiff 67.4994 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 505572 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 2732 erate 0.0224 score 2670.80 - absdiff 3661.56 percdiff 81.3394 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 505574 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3348 erate 0.0216 score 3275.68 - absdiff 3056.68 percdiff 63.6275 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 621498 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 1460 erate 0.0377 score 1404.96 - absdiff 4927.40 percdiff 127.3672 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 36467 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1612 erate 0.0342 score 1556.87 - absdiff 4451.68 percdiff 117.6850 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 377979 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1080 erate 0.0445 score 1031.94 - absdiff 4976.61 percdiff 141.3711 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 483829 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1316 erate 0.0647 score 1230.85 - absdiff 4777.70 percdiff 131.9914 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 483830 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1323 erate 0.0591 score 1244.81 - absdiff 4763.74 percdiff 131.3526 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 505572 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1684 erate 0.0410 score 1614.96 - absdiff 4393.59 percdiff 115.2644 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 505574 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 748 erate 0.0481 score 712.02 - absdiff 5296.53 percdiff 157.6214 tig 33 read 580218 pos 10266-17020 IS confused by 3' edge to read 548717 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 6105 erate 0.0295 score 5924.90 - absdiff 83.65 percdiff 1.4019 tig 33 read 580218 pos 10266-17020 IS confused by 3' edge to read 553106 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 4159 erate 0.0486 score 3956.87 - absdiff 2051.68 percdiff 41.1759 tig 33 read 580218 pos 10266-17020 IS confused by 3' edge to read 553107 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 4165 erate 0.0411 score 3993.82 - absdiff 2014.73 percdiff 40.2851 tig 33 read 580218 pos 10266-17020 NOT confused by 5' edge to read 578688 - best edge read 116488 len 6389 erate 0.0449 score 6102.13 - alt edge len 2044 erate 0.0586 score 1924.22 - absdiff 4177.91 percdiff 104.1048 tig 33 read 580218 pos 10266-17020 NOT confused by 5' edge to read 578689 - best edge read 116488 len 6389 erate 0.0449 score 6102.13 - alt edge len 2045 erate 0.0532 score 1936.21 - absdiff 4165.93 percdiff 103.6514 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 621498 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1052 erate 0.0542 score 994.98 - absdiff 5013.57 percdiff 143.1726 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 36467 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 1081 erate 0.0648 score 1010.95 - absdiff 5620.87 percdiff 147.0898 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 78265 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 1447 erate 0.0435 score 1384.06 - absdiff 5247.76 percdiff 130.9343 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 234212 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 1310 erate 0.0709 score 1217.12 - absdiff 4818.86 percdiff 132.8773 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 295488 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 1320 erate 0.0629 score 1236.97 - absdiff 5394.85 percdiff 137.1201 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 377979 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 869 erate 0.0506 score 825.03 - absdiff 5806.79 percdiff 155.7438 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 483829 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 701 erate 0.0603 score 658.73 - absdiff 5377.26 percdiff 160.6418 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 483830 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 708 erate 0.0599 score 665.59 - absdiff 5370.39 percdiff 160.2726 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 505572 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 545 erate 0.0495 score 518.02 - absdiff 6113.79 percdiff 171.0191 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 505574 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 535 erate 0.0505 score 507.98 - absdiff 6123.83 percdiff 171.5408 tig 33 read 399587 pos 10363-18850 IS confused by 3' edge to read 548717 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 5232 erate 0.0478 score 4981.91 - absdiff 1054.07 percdiff 19.1339 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 553106 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 3311 erate 0.0718 score 3073.27 - absdiff 2962.72 percdiff 65.0485 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 553107 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 3317 erate 0.0649 score 3101.73 - absdiff 2934.26 percdiff 64.2230 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 621497 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 834 erate 0.0683 score 777.04 - absdiff 5854.78 percdiff 158.0482 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 621498 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 839 erate 0.0548 score 793.02 - absdiff 5838.79 percdiff 157.2773 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 234212 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1965 erate 0.0613 score 1844.55 - absdiff 4180.23 percdiff 106.2411 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 377979 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1129 erate 0.0399 score 1083.95 - absdiff 4940.82 percdiff 139.0072 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 483829 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1364 erate 0.0664 score 1273.43 - absdiff 4751.34 percdiff 130.2058 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 483830 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1371 erate 0.0625 score 1285.31 - absdiff 4739.46 percdiff 129.6691 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 505572 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1427 erate 0.0372 score 1373.92 - absdiff 4650.86 percdiff 125.7211 tig 33 read 116488 pos 10561-17251 IS confused by 3' edge to read 548717 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 5824 erate 0.0320 score 5637.63 - absdiff 387.14 percdiff 6.6391 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 553106 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 3913 erate 0.0435 score 3742.78 - absdiff 2281.99 percdiff 46.7258 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 553107 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 3919 erate 0.0346 score 3783.40 - absdiff 2241.37 percdiff 45.7041 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 621497 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1408 erate 0.0597 score 1323.94 - absdiff 4700.83 percdiff 127.9361 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 621498 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1413 erate 0.0488 score 1344.05 - absdiff 4680.73 percdiff 127.0414 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 234212 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1951 erate 0.0622 score 1829.65 - absdiff 4604.76 percdiff 111.4406 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 377979 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1425 erate 0.0442 score 1362.01 - absdiff 5072.39 percdiff 130.1210 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 483829 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1347 erate 0.0691 score 1253.92 - absdiff 5180.48 percdiff 134.7623 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 483830 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1354 erate 0.0659 score 1264.77 - absdiff 5169.63 percdiff 134.2905 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 505572 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1412 erate 0.0368 score 1360.04 - absdiff 5074.36 percdiff 130.2047 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 505574 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1402 erate 0.0364 score 1350.97 - absdiff 5083.44 percdiff 130.5894 tig 33 read 116490 pos 10590-17378 IS confused by 3' edge to read 548717 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 5843 erate 0.0298 score 5668.88 - absdiff 765.52 percdiff 12.6499 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 553106 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 3894 erate 0.0468 score 3711.76 - absdiff 2722.64 percdiff 53.6684 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 553107 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 3900 erate 0.0383 score 3750.63 - absdiff 2683.77 percdiff 52.7003 tig 33 read 116490 pos 10590-17378 NOT confused by 5' edge to read 578688 - best edge read 355513 len 6654 erate 0.0294 score 6458.37 - alt edge len 2339 erate 0.0617 score 2194.68 - absdiff 4263.69 percdiff 98.5476 tig 33 read 116490 pos 10590-17378 NOT confused by 5' edge to read 578689 - best edge read 355513 len 6654 erate 0.0294 score 6458.37 - alt edge len 2340 erate 0.0574 score 2205.68 - absdiff 4252.69 percdiff 98.1685 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 234212 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 1891 erate 0.0661 score 1766.00 - absdiff 4618.60 percdiff 113.3314 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 377979 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 1056 erate 0.0559 score 996.97 - absdiff 5387.64 percdiff 145.9752 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 505572 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 1043 erate 0.0499 score 990.95 - absdiff 5393.65 percdiff 146.2574 tig 33 read 355513 pos 10665-17695 IS confused by 3' edge to read 548717 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 5770 erate 0.0298 score 5598.05 - absdiff 786.55 percdiff 13.1282 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 553106 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 3832 erate 0.0459 score 3656.11 - absdiff 2728.50 percdiff 54.3486 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 553107 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 3838 erate 0.0386 score 3689.85 - absdiff 2694.75 percdiff 53.4967 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 36467 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 1093 erate 0.0659 score 1020.97 - absdiff 5764.64 percdiff 147.6867 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 78265 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 1456 erate 0.0495 score 1383.93 - absdiff 5401.68 percdiff 132.2396 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 295488 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 1330 erate 0.0649 score 1243.68 - absdiff 5541.93 percdiff 138.0427 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 483829 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 800 erate 0.0678 score 745.76 - absdiff 6039.85 percdiff 160.3918 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 483830 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 807 erate 0.0686 score 751.64 - absdiff 6033.97 percdiff 160.1107 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 505572 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 554 erate 0.0397 score 532.01 - absdiff 6253.61 percdiff 170.9192 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 505574 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 544 erate 0.0404 score 522.02 - absdiff 6263.59 percdiff 171.4259 tig 33 read 637670 pos 12730-19804 NOT confused by 3' edge to read 548717 - best edge read 399587 len 7007 erate 0.0477 score 6672.77 - alt edge len 3776 erate 0.0262 score 3677.07 - absdiff 2995.70 percdiff 57.8888 tig 33 read 637670 pos 12730-19804 NOT confused by 3' edge to read 553106 - best edge read 399587 len 7007 erate 0.0477 score 6672.77 - alt edge len 1834 erate 0.0461 score 1749.45 - absdiff 4923.31 percdiff 116.9125 tig 33 read 637670 pos 12730-19804 NOT confused by 3' edge to read 553107 - best edge read 399587 len 7007 erate 0.0477 score 6672.77 - alt edge len 1840 erate 0.0367 score 1772.47 - absdiff 4900.29 percdiff 116.0487 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 36467 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1247 erate 0.0378 score 1199.86 - absdiff 2277.49 percdiff 97.3866 tig 33 read 529311 pos 12810-20269 IS confused by 5' edge to read 78265 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1919 erate 0.0428 score 1836.87 - absdiff 1640.49 percdiff 61.7396 tig 33 read 529311 pos 12810-20269 IS confused by 5' edge to read 295488 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1790 erate 0.0659 score 1672.04 - absdiff 1805.32 percdiff 70.1176 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 377979 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1335 erate 0.0465 score 1272.92 - absdiff 2204.43 percdiff 92.8128 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 483830 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1265 erate 0.0618 score 1186.82 - absdiff 2290.53 percdiff 98.2181 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 505572 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1322 erate 0.0409 score 1267.93 - absdiff 2209.43 percdiff 93.1209 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 505574 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 690 erate 0.0451 score 658.88 - absdiff 2818.48 percdiff 136.2821 tig 33 read 529311 pos 12810-20269 NOT confused by 3' edge to read 548717 - best edge read 529310 len 7397 erate 0.0237 score 7221.69 - alt edge len 3687 erate 0.0309 score 3573.07 - absdiff 3648.62 percdiff 67.5998 tig 33 read 529311 pos 12810-20269 NOT confused by 3' edge to read 553106 - best edge read 529310 len 7397 erate 0.0237 score 7221.69 - alt edge len 1737 erate 0.0540 score 1643.20 - absdiff 5578.49 percdiff 125.8558 tig 33 read 529311 pos 12810-20269 NOT confused by 3' edge to read 553107 - best edge read 529310 len 7397 erate 0.0237 score 7221.69 - alt edge len 1743 erate 0.0448 score 1664.91 - absdiff 5556.78 percdiff 125.0596 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 621498 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 996 erate 0.0523 score 943.91 - absdiff 2533.45 percdiff 114.6028 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 36467 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1551 erate 0.0561 score 1463.99 - absdiff 5749.89 percdiff 132.5185 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 78265 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1913 erate 0.0476 score 1821.94 - absdiff 5391.94 percdiff 119.3459 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 295488 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1787 erate 0.0688 score 1664.05 - absdiff 5549.83 percdiff 125.0252 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 377979 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1335 erate 0.0449 score 1275.06 - absdiff 5938.82 percdiff 139.9191 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 483829 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1258 erate 0.0668 score 1173.97 - absdiff 6039.92 percdiff 144.0159 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 483830 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1266 erate 0.0666 score 1181.68 - absdiff 6032.20 percdiff 143.6996 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 505572 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1011 erate 0.0406 score 969.95 - absdiff 6243.93 percdiff 152.5917 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 505574 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1001 erate 0.0390 score 961.96 - absdiff 6251.92 percdiff 152.9364 tig 33 read 529310 pos 12814-20271 NOT confused by 5' edge to read 548717 - best edge read 637670 len 6936 erate 0.0214 score 6787.57 - alt edge len 3694 erate 0.0274 score 3592.78 - absdiff 3194.79 percdiff 61.5545 tig 33 read 529310 pos 12814-20271 NOT confused by 5' edge to read 553106 - best edge read 637670 len 6936 erate 0.0214 score 6787.57 - alt edge len 1748 erate 0.0487 score 1662.87 - absdiff 5124.70 percdiff 121.2883 tig 33 read 529310 pos 12814-20271 NOT confused by 5' edge to read 553107 - best edge read 637670 len 6936 erate 0.0214 score 6787.57 - alt edge len 1754 erate 0.0378 score 1687.70 - absdiff 5099.87 percdiff 120.3471 saved region 6235:23655 - 23 best edges are potentially confused break tig 33 into up to 3 pieces: 0 5735 unique (length 5735) 5735 24155 repeat (length 18420) 24155 39942 unique (length 15787) Creating Unitig 113084 Creating Unitig 113085 Creating Unitig 113086 For tig 33 unique region 0 5735 - 0/ 16 reads repeat/unique - unitig 113084 created. For tig 33 repeat region 5735 24155 - 162/ 0 reads repeat/unique - unitig 113085 created. For tig 33 unique region 24155 39942 - 0/ 18 reads repeat/unique - unitig 113086 created. Annotating repeats in reads for tig 35/113047. Annotated with 126 overlaps. Scan reads to discard spanned repeats. discard region 2079:4768 - contained in read 114395 0- 6109 discard region 9955:13273 - contained in read 560452 2687- 16606 discard region 21312:23845 - contained in read 21511 16291- 25605 discard region 38243:41738 - contained in read 80900 34421- 44659 thickest edges to the repeat regions: saved region 13661:20673 - closest read 330135 ( +222) 13439:20926 ( +253) (contained) saved region 13661:20673 - closest 5' read 330135 ( +222) 13439:20926 ( +253) saved region 13661:20673 - closest 3' read 330135 ( +222) 13439:20926 ( +253) saved region 29364:37083 - closest 5' read 121374 ( +3211) 26153:37055 ( -28) saved region 29364:37083 - closest 3' read 80900 ( -5057) 34421:44659 ( +7576) search for confused edges: discard region 13661:20673 - no confusion in best edges discard region 29364:37083 - no confusion in best edges Annotating repeats in reads for tig 38/113047. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 5034:5656 - contained in read 720882 3210- 6643 thickest edges to the repeat regions: saved region 0:4762 - closest 5' read 291495 ( +0) 0:4693 ( -69) saved region 0:4762 - closest 3' read 720882 ( -3210) 3210:6643 ( +1881) search for confused edges: discard region 0:4762 - no confusion in best edges Annotating repeats in reads for tig 39/113047. Annotated with 201 overlaps. Scan reads to discard spanned repeats. discard region 15006:15612 - contained in read 393888 8125- 16921 thickest edges to the repeat regions: saved region 16164:28514 - closest 5' read 112222 ( +0) 16164:20916 ( -7598) saved region 16164:28514 - closest 3' read 275269 ( -148) 16312:28514 ( +0) search for confused edges: tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60544 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6157 erate 0.0344 score 5945.20 - absdiff 2609.54 percdiff 35.9938 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60545 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6140 erate 0.0345 score 5928.17 - absdiff 2626.56 percdiff 36.2712 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60546 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6160 erate 0.0354 score 5941.94 - absdiff 2612.80 percdiff 36.0469 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60547 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6163 erate 0.0319 score 5966.40 - absdiff 2588.33 percdiff 35.6492 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 499458 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 3037 erate 0.0232 score 2966.54 - absdiff 5588.19 percdiff 97.0065 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 541838 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 4932 erate 0.0211 score 4827.93 - absdiff 3726.80 percdiff 55.6959 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 659233 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6218 erate 0.0178 score 6107.32 - absdiff 2447.42 percdiff 33.3843 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 713390 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 1327 erate 0.0241 score 1295.02 - absdiff 7259.72 percdiff 147.4091 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 17408 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 789 erate 0.0536 score 746.71 - absdiff 7768.41 percdiff 167.7511 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 60921 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 3072 erate 0.0537 score 2907.03 - absdiff 5608.09 percdiff 98.1967 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 92794 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 2304 erate 0.0674 score 2148.71 - absdiff 6366.41 percdiff 119.4019 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 229182 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 2604 erate 0.0457 score 2485.00 - absdiff 6030.12 percdiff 109.6374 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 299294 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 3391 erate 0.0452 score 3237.73 - absdiff 5277.39 percdiff 89.8062 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 355019 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 2746 erate 0.0510 score 2605.95 - absdiff 5909.17 percdiff 106.2697 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 471657 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 775 erate 0.0400 score 744.00 - absdiff 7771.12 percdiff 167.8587 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 570052 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 732 erate 0.0562 score 690.86 - absdiff 7824.26 percdiff 169.9821 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 570053 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 749 erate 0.0514 score 710.50 - absdiff 7804.62 percdiff 169.1944 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 593537 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 812 erate 0.0471 score 773.75 - absdiff 7741.37 percdiff 166.6804 tig 39 read 275269 pos 16312-28514 IS confused by 5' edge to read 657576 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 8529 erate 0.0285 score 8285.92 - absdiff 229.20 percdiff 2.7284 tig 39 read 275269 pos 16312-28514 IS confused by 5' edge to read 657577 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 8448 erate 0.0327 score 8171.75 - absdiff 343.37 percdiff 4.1155 saved region 16164:28514 - 2 best edges are potentially confused break tig 39 into up to 2 pieces: 0 15664 unique (length 15664) 15664 28514 repeat (length 12850) Creating Unitig 113087 Creating Unitig 113088 For tig 39 unique region 0 15664 - 0/ 19 reads repeat/unique - unitig 113087 created. For tig 39 repeat region 15664 28514 - 77/ 0 reads repeat/unique - unitig 113088 created. Annotating repeats in reads for tig 41/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5096:11079 - contained in read 92087 3033- 11079 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 0:8196 - contained in read 642492 0- 10299 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45/113047. Annotated with 995 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14607 - closest 5' read 648663 ( +0) 0:8717 ( -5890) saved region 0:14607 - closest 3' read 65518 (-10486) 10486:14607 ( +0) search for confused edges: tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 258764 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3277 erate 0.0327 score 3169.84 - absdiff 4538.93 percdiff 83.4469 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 258766 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3278 erate 0.0311 score 3176.05 - absdiff 4532.72 percdiff 83.2851 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 258769 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3279 erate 0.0305 score 3178.99 - absdiff 4529.78 percdiff 83.2087 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 275687 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3466 erate 0.0306 score 3359.94 - absdiff 4348.83 percdiff 78.5788 tig 45 read 54715 pos 244-9565 IS confused by 5' edge to read 286039 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 6378 erate 0.0480 score 6071.86 - absdiff 1636.92 percdiff 23.7568 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 466897 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3421 erate 0.0524 score 3241.74 - absdiff 4467.03 percdiff 81.5858 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 611731 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 5551 erate 0.0400 score 5328.96 - absdiff 2379.81 percdiff 36.5066 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 258764 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3266 erate 0.0315 score 3163.12 - absdiff 5898.73 percdiff 96.5030 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 258766 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3267 erate 0.0306 score 3167.03 - absdiff 5894.82 percdiff 96.4082 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 258769 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3268 erate 0.0309 score 3167.02 - absdiff 5894.83 percdiff 96.4085 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 275687 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3455 erate 0.0292 score 3354.11 - absdiff 5707.74 percdiff 91.9419 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 286039 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 6366 erate 0.0484 score 6057.89 - absdiff 3003.97 percdiff 39.7357 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 466897 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3410 erate 0.0541 score 3225.52 - absdiff 5836.33 percdiff 94.9973 tig 45 read 54714 pos 424-9772 NOT confused by 5' edge to read 611731 - best edge read 364992 len 5619 erate 0.0599 score 5282.42 - alt edge len 1313 erate 0.0293 score 1274.53 - absdiff 4007.89 percdiff 122.2487 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 258764 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2704 erate 0.0503 score 2567.99 - absdiff 2746.95 percdiff 69.6936 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 258766 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2705 erate 0.0540 score 2558.93 - absdiff 2756.01 percdiff 70.0039 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 258769 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2706 erate 0.0523 score 2564.48 - absdiff 2750.46 percdiff 69.8139 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 275687 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2893 erate 0.0633 score 2709.87 - absdiff 2605.06 percdiff 64.9253 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 286039 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2825 erate 0.0304 score 2739.12 - absdiff 2575.82 percdiff 63.9632 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 466897 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2848 erate 0.0531 score 2696.77 - absdiff 2618.17 percdiff 65.3585 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 611731 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2002 erate 0.0267 score 1948.55 - absdiff 3366.39 percdiff 92.6936 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 27206 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 787 erate 0.0606 score 739.31 - absdiff 6580.82 percdiff 163.3072 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 152124 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 1137 erate 0.0695 score 1057.98 - absdiff 6262.15 percdiff 149.4884 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 262068 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 607 erate 0.0447 score 579.87 - absdiff 6740.26 percdiff 170.6396 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 262070 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 807 erate 0.0665 score 753.33 - absdiff 6566.79 percdiff 162.6760 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 316552 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 1019 erate 0.0638 score 953.99 - absdiff 6366.14 percdiff 153.8808 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 258764 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2677 erate 0.0510 score 2540.47 - absdiff 6068.28 percdiff 108.8556 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 258766 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2675 erate 0.0548 score 2528.41 - absdiff 6080.34 percdiff 109.1901 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 258769 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2679 erate 0.0524 score 2538.62 - absdiff 6070.13 percdiff 108.9069 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 275687 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2864 erate 0.0648 score 2678.41 - absdiff 5930.34 percdiff 105.0811 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 286039 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2796 erate 0.0374 score 2691.43 - absdiff 5917.32 percdiff 104.7297 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 466897 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2819 erate 0.0543 score 2665.93 - absdiff 5942.82 percdiff 105.4189 tig 45 read 542811 pos 2886-12934 NOT confused by 5' edge to read 575958 - best edge read 189901 len 7246 erate 0.0355 score 6988.77 - alt edge len 3324 erate 0.0596 score 3125.89 - absdiff 3862.88 percdiff 76.3818 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 611731 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 1973 erate 0.0423 score 1889.54 - absdiff 6719.21 percdiff 128.0057 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 28980 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 2380 erate 0.0654 score 2224.35 - absdiff 4149.28 percdiff 96.5176 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 28981 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 2391 erate 0.0593 score 2249.21 - absdiff 4124.41 percdiff 95.6625 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 47651 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 597 erate 0.0554 score 563.93 - absdiff 5809.70 percdiff 167.4856 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 110646 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1796 erate 0.0552 score 1696.86 - absdiff 4676.77 percdiff 115.8980 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 262068 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 784 erate 0.0489 score 745.66 - absdiff 5627.97 percdiff 158.1047 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 262070 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 796 erate 0.0532 score 753.65 - absdiff 5619.98 percdiff 157.7032 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 318225 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 894 erate 0.0494 score 849.84 - absdiff 5523.79 percdiff 152.9402 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 323775 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1312 erate 0.0618 score 1230.92 - absdiff 5142.71 percdiff 135.2536 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 323778 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1282 erate 0.0625 score 1201.88 - absdiff 5171.75 percdiff 136.5389 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 323779 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1311 erate 0.0626 score 1228.93 - absdiff 5144.70 percdiff 135.3412 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 332571 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1756 erate 0.0598 score 1650.99 - absdiff 4722.64 percdiff 117.7037 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 337500 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1795 erate 0.0676 score 1673.66 - absdiff 4699.97 percdiff 116.8088 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 572222 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 2158 erate 0.0618 score 2024.64 - absdiff 4348.99 percdiff 103.5688 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 28980 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 2391 erate 0.0696 score 2224.59 - absdiff 4158.34 percdiff 96.6212 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 28981 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 2402 erate 0.0597 score 2258.60 - absdiff 4124.33 percdiff 95.4537 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 47651 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1903 erate 0.0668 score 1775.88 - absdiff 4607.05 percdiff 112.9344 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 110646 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1805 erate 0.0562 score 1703.56 - absdiff 4679.37 percdiff 115.7331 tig 45 read 698749 pos 5968-12572 NOT confused by 5' edge to read 262068 - best edge read 364992 len 4049 erate 0.0603 score 3804.85 - alt edge len 778 erate 0.0585 score 732.49 - absdiff 3072.36 percdiff 135.4258 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 262070 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 808 erate 0.0622 score 757.74 - absdiff 5625.19 percdiff 157.5534 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 318225 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 902 erate 0.0562 score 851.31 - absdiff 5531.62 percdiff 152.9290 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 323775 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1321 erate 0.0607 score 1240.82 - absdiff 5142.11 percdiff 134.8973 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 323778 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1292 erate 0.0613 score 1212.80 - absdiff 5170.13 percdiff 136.1325 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 323779 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1320 erate 0.0624 score 1237.63 - absdiff 5145.30 percdiff 135.0372 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 332571 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1768 erate 0.0626 score 1657.32 - absdiff 4725.61 percdiff 117.5487 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 572222 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 2168 erate 0.0643 score 2028.60 - absdiff 4354.33 percdiff 103.5325 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 601842 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 512 erate 0.0697 score 476.31 - absdiff 5906.62 percdiff 172.2235 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 28980 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 2396 erate 0.0682 score 2232.59 - absdiff 2719.21 percdiff 75.6977 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 28981 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 2407 erate 0.0605 score 2261.38 - absdiff 2690.43 percdiff 74.5976 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 47651 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 610 erate 0.0598 score 573.52 - absdiff 4378.28 percdiff 158.4805 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 110646 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1809 erate 0.0549 score 1709.69 - absdiff 3242.12 percdiff 97.3392 tig 45 read 698746 pos 6264-12870 NOT confused by 3' edge to read 262068 - best edge read 698744 len 6458 erate 0.0123 score 6378.57 - alt edge len 773 erate 0.0560 score 729.71 - absdiff 5648.85 percdiff 158.9373 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 262070 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 814 erate 0.0555 score 768.82 - absdiff 4182.98 percdiff 146.2421 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 318225 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 910 erate 0.0525 score 862.23 - absdiff 4089.58 percdiff 140.6797 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 323775 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1328 erate 0.0588 score 1249.91 - absdiff 3701.89 percdiff 119.3828 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 323778 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1299 erate 0.0588 score 1222.62 - absdiff 3729.19 percdiff 120.7946 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 323779 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1327 erate 0.0622 score 1244.46 - absdiff 3707.35 percdiff 119.6638 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 332571 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1772 erate 0.0584 score 1668.52 - absdiff 3283.29 percdiff 99.1883 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 332573 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1739 erate 0.0664 score 1623.53 - absdiff 3328.28 percdiff 101.2351 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 337500 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1808 erate 0.0664 score 1687.95 - absdiff 3263.86 percdiff 98.3126 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 572222 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 2172 erate 0.0622 score 2036.90 - absdiff 2914.90 percdiff 83.4176 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 601842 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 518 erate 0.0631 score 485.31 - absdiff 4466.49 percdiff 164.2962 tig 45 read 635073 pos 6379-12191 IS confused by 5' edge to read 27469 - best edge read 311209 len 2829 erate 0.0424 score 2709.05 - alt edge len 1515 erate 0.0595 score 1424.86 - absdiff 1284.19 percdiff 62.1297 tig 45 read 635073 pos 6379-12191 NOT confused by 3' edge to read 286039 - best edge read 698746 len 5369 erate 0.0602 score 5045.79 - alt edge len 790 erate 0.0601 score 742.52 - absdiff 4303.27 percdiff 148.6882 tig 45 read 635073 pos 6379-12191 IS confused by 5' edge to read 332571 - best edge read 311209 len 2829 erate 0.0424 score 2709.05 - alt edge len 812 erate 0.0552 score 767.18 - absdiff 1941.87 percdiff 111.7230 tig 45 read 635073 pos 6379-12191 NOT confused by 3' edge to read 466897 - best edge read 698746 len 5369 erate 0.0602 score 5045.79 - alt edge len 2998 erate 0.0525 score 2840.61 - absdiff 2205.18 percdiff 55.9237 tig 45 read 635073 pos 6379-12191 NOT confused by 3' edge to read 575958 - best edge read 698746 len 5369 erate 0.0602 score 5045.79 - alt edge len 677 erate 0.0463 score 645.65 - absdiff 4400.13 percdiff 154.6227 saved region 0:14607 - 3 best edges are potentially confused Annotating repeats in reads for tig 47/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 48/113047. Annotated with 195 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8401 - closest 5' read 389607 ( +0) 0:4753 ( -3648) saved region 0:8401 - closest 3' read 491949 ( -2378) 2378:8401 ( +0) search for confused edges: tig 48 read 389607 pos 0-4753 NOT confused by 5' edge to read 106186 - best edge read 11041 len 3612 erate 0.0356 score 3483.41 - alt edge len 904 erate 0.0244 score 881.94 - absdiff 2601.47 percdiff 119.1871 tig 48 read 572222 pos 30-4776 NOT confused by 3' edge to read 27206 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 978 erate 0.0637 score 915.70 - absdiff 3174.75 percdiff 126.8339 tig 48 read 572222 pos 30-4776 NOT confused by 5' edge to read 106186 - best edge read 389607 len 4697 erate 0.0432 score 4494.09 - alt edge len 895 erate 0.0169 score 879.87 - absdiff 3614.22 percdiff 134.5083 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 262068 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2119 erate 0.0434 score 2027.04 - absdiff 2063.42 percdiff 67.4596 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 262070 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2318 erate 0.0478 score 2207.20 - absdiff 1883.25 percdiff 59.8081 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 316552 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2537 erate 0.0566 score 2393.41 - absdiff 1697.05 percdiff 52.3468 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 698744 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2191 erate 0.0618 score 2055.60 - absdiff 2034.86 percdiff 66.2167 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 698746 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2195 erate 0.0622 score 2058.47 - absdiff 2031.98 percdiff 66.0923 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 698749 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2190 erate 0.0643 score 2049.18 - absdiff 2041.27 percdiff 66.4948 tig 48 read 11041 pos 758-6556 NOT confused by 5' edge to read 492936 - best edge read 637905 len 4995 erate 0.0393 score 4798.70 - alt edge len 774 erate 0.0402 score 742.89 - absdiff 4055.81 percdiff 146.3774 tig 48 read 637906 pos 905-6191 NOT confused by 3' edge to read 420616 - best edge read 637905 len 5194 erate 0.0110 score 5136.87 - alt edge len 1678 erate 0.0737 score 1554.33 - absdiff 3582.53 percdiff 107.0820 tig 48 read 637906 pos 905-6191 NOT confused by 5' edge to read 492936 - best edge read 233813 len 4437 erate 0.0304 score 4302.12 - alt edge len 1614 erate 0.0688 score 1502.96 - absdiff 2799.16 percdiff 96.4384 tig 48 read 637906 pos 905-6191 NOT confused by 5' edge to read 492937 - best edge read 233813 len 4437 erate 0.0304 score 4302.12 - alt edge len 1228 erate 0.0733 score 1137.99 - absdiff 3164.13 percdiff 116.3260 tig 48 read 637905 pos 1097-6963 NOT confused by 3' edge to read 492936 - best edge read 637906 len 5177 erate 0.0110 score 5120.05 - alt edge len 1578 erate 0.0616 score 1480.80 - absdiff 3639.26 percdiff 110.2664 tig 48 read 637905 pos 1097-6963 NOT confused by 3' edge to read 492937 - best edge read 637906 len 5177 erate 0.0110 score 5120.05 - alt edge len 1192 erate 0.0469 score 1136.10 - absdiff 3983.96 percdiff 127.3614 tig 48 read 106186 pos 5951-9272 IS confused by 5' edge to read 389607 - best edge read 702692 len 973 erate 0.0580 score 916.57 - alt edge len 922 erate 0.0244 score 899.50 - absdiff 17.06 percdiff 1.8791 tig 48 read 106186 pos 5951-9272 IS confused by 5' edge to read 572222 - best edge read 702692 len 973 erate 0.0580 score 916.57 - alt edge len 898 erate 0.0158 score 883.81 - absdiff 32.75 percdiff 3.6386 saved region 0:8401 - 8 best edges are potentially confused break tig 48 into up to 2 pieces: 0 8901 repeat (length 8901) 8901 9272 unique (length 371) Creating Unitig 113089 Creating Unitig 113090 For tig 48 repeat region 0 8901 - 38/ 0 reads repeat/unique - unitig 113089 created. For tig 48 unique region 8901 9272 - 0/ 1 reads repeat/unique - unitig 113090 created. Annotating repeats in reads for tig 50/113047. Annotated with 104 overlaps. Scan reads to discard spanned repeats. discard region 15948:17040 - contained in read 707587 6209- 18317 discard region 17159:19756 - contained in read 496405 12932- 27633 discard region 22337:28048 - contained in read 478810 17394- 43630 discard region 34221:41716 - contained in read 478810 17394- 43630 discard region 46114:46783 - contained in read 255236 32605- 50433 thickest edges to the repeat regions: saved region 4262:11966 - closest 5' read 255460 ( +111) 4151:10501 ( -1465) saved region 4262:11966 - closest 3' read 227931 ( -789) 5051:12329 ( +363) search for confused edges: discard region 4262:11966 - no confusion in best edges Annotating repeats in reads for tig 52/113047. Annotated with 563 overlaps. Scan reads to discard spanned repeats. discard region 25770:29792 - contained in read 228822 24658- 34313 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 54/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 11119:11775 - contained in read 19697 5844- 14358 discard region 12922:15797 - contained in read 587422 11801- 17324 discard region 16680:17324 - contained in read 252119 12348- 23300 discard region 20374:21848 - contained in read 252119 12348- 23300 discard region 22045:24561 - contained in read 230358 20384- 26326 thickest edges to the repeat regions: saved region 4377:9755 - closest 5' read 15780 ( +2638) 1739:9753 ( -2) saved region 4377:9755 - closest 3' read 229085 ( -151) 4528:11324 ( +1569) search for confused edges: discard region 4377:9755 - no confusion in best edges Annotating repeats in reads for tig 57/113047. Annotated with 114 overlaps. Scan reads to discard spanned repeats. discard region 3023:4068 - contained in read 288045 125- 4998 thickest edges to the repeat regions: saved region 4384:10462 - closest 5' read 278292 ( +0) 4384:9581 ( -881) saved region 4384:10462 - closest 3' read 288976 ( -3427) 7811:23815 (+13353) search for confused edges: tig 57 read 558525 pos 3023-9467 IS confused by 3' edge to read 171455 - best edge read 288975 len 1538 erate 0.0600 score 1445.72 - alt edge len 1406 erate 0.0371 score 1353.84 - absdiff 91.88 percdiff 6.5641 tig 57 read 558525 pos 3023-9467 IS confused by 3' edge to read 514099 - best edge read 288975 len 1538 erate 0.0600 score 1445.72 - alt edge len 1287 erate 0.0406 score 1234.75 - absdiff 210.97 percdiff 15.7414 tig 57 read 558525 pos 3023-9467 IS confused by 3' edge to read 514100 - best edge read 288975 len 1538 erate 0.0600 score 1445.72 - alt edge len 1278 erate 0.0458 score 1219.47 - absdiff 226.25 percdiff 16.9783 saved region 4384:10462 - 3 best edges are potentially confused break tig 57 into up to 3 pieces: 0 3884 unique (length 3884) 3884 10962 repeat (length 7078) 10962 47450 unique (length 36488) Creating Unitig 113091 Creating Unitig 113092 Creating Unitig 113093 For tig 57 unique region 0 3884 - 0/ 22 reads repeat/unique - unitig 113091 created. For tig 57 repeat region 3884 10962 - 9/ 0 reads repeat/unique - unitig 113092 created. For tig 57 unique region 10962 47450 - 0/ 55 reads repeat/unique - unitig 113093 created. Annotating repeats in reads for tig 58/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 60/113047. Annotated with 267 overlaps. Scan reads to discard spanned repeats. discard region 5752:6401 - contained in read 37904 3491- 9935 discard region 15444:19570 - contained in read 696064 9786- 20245 discard region 23181:23807 - contained in read 592377 19335- 27105 discard region 38256:39983 - contained in read 397295 34808- 43706 discard region 59088:60024 - contained in read 642704 47318- 62696 thickest edges to the repeat regions: saved region 8582:11784 - closest 5' read 296718 ( +3233) 5349:11055 ( -729) saved region 8582:11784 - closest 3' read 696064 ( -1204) 9786:20245 ( +8461) saved region 28964:37461 - closest read 598999 ( +0) 28964:38120 ( +659) (contained) saved region 28964:37461 - closest 5' read 598999 ( +0) 28964:38120 ( +659) saved region 28964:37461 - closest 3' read 598999 ( +0) 28964:38120 ( +659) saved region 45625:54611 - closest 5' read 43874 ( +1239) 44386:52583 ( -2028) saved region 45625:54611 - closest 3' read 642704 ( -1693) 47318:62696 ( +8085) search for confused edges: tig 60 read 43874 pos 44386-52583 IS confused by 5' edge to read 496405 - best edge read 642704 len 5131 erate 0.0726 score 4758.49 - alt edge len 5017 erate 0.0534 score 4749.09 - absdiff 9.40 percdiff 0.1977 discard region 8582:11784 - no confusion in best edges discard region 28964:37461 - no confusion in best edges saved region 45625:54611 - 1 best edges are potentially confused break tig 60 into up to 3 pieces: 0 45125 unique (length 45125) 45125 55111 repeat (length 9986) 55111 64083 unique (length 8972) Creating Unitig 113094 Creating Unitig 113095 Creating Unitig 113096 For tig 60 unique region 0 45125 - 0/ 91 reads repeat/unique - unitig 113094 created. For tig 60 repeat region 45125 55111 - 33/ 0 reads repeat/unique - unitig 113095 created. For tig 60 unique region 55111 64083 - 0/ 8 reads repeat/unique - unitig 113096 created. Annotating repeats in reads for tig 62/113047. Annotated with 99 overlaps. Scan reads to discard spanned repeats. discard region 2100:8430 - contained in read 569033 130- 8430 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 66/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 7202:7724 - contained in read 311419 2640- 11088 discard region 32380:33688 - contained in read 173091 27577- 36167 thickest edges to the repeat regions: saved region 13485:17849 - closest read 166560 ( +93) 13392:18400 ( +551) (contained) saved region 13485:17849 - closest read 236295 ( +86) 13399:23196 ( +5347) (contained) saved region 13485:17849 - closest 5' read 236295 ( +86) 13399:23196 ( +5347) saved region 13485:17849 - closest 3' read 166560 ( +93) 13392:18400 ( +551) search for confused edges: discard region 13485:17849 - no confusion in best edges Annotating repeats in reads for tig 67/113047. Annotated with 366 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6561:30128 - closest 5' read 341584 ( +1455) 5106:17083 (-13045) saved region 6561:30128 - closest 3' read 306567 (-19159) 25720:31469 ( +1341) saved region 36004:40660 - closest 5' read 590761 ( +0) 36004:40263 ( -397) saved region 36004:40660 - closest 3' read 81502 ( -1108) 37112:41941 ( +1281) search for confused edges: tig 67 read 341584 pos 5106-17083 NOT confused by 3' edge to read 473487 - best edge read 620091 len 9434 erate 0.0275 score 9174.57 - alt edge len 2990 erate 0.0244 score 2917.04 - absdiff 6257.52 percdiff 103.5019 tig 67 read 341584 pos 5106-17083 NOT confused by 3' edge to read 473490 - best edge read 620091 len 9434 erate 0.0275 score 9174.57 - alt edge len 2989 erate 0.0211 score 2925.93 - absdiff 6248.63 percdiff 103.2789 tig 67 read 620091 pos 7605-19374 NOT confused by 5' edge to read 437395 - best edge read 533340 len 11406 erate 0.0126 score 11262.28 - alt edge len 1411 erate 0.0650 score 1319.29 - absdiff 9943.00 percdiff 158.0566 tig 67 read 620091 pos 7605-19374 NOT confused by 3' edge to read 577504 - best edge read 341584 len 9297 erate 0.0275 score 9041.33 - alt edge len 1667 erate 0.0328 score 1612.32 - absdiff 7429.01 percdiff 139.4641 tig 67 read 533340 pos 7787-20790 NOT confused by 5' edge to read 577504 - best edge read 620091 len 11423 erate 0.0126 score 11279.07 - alt edge len 1495 erate 0.0323 score 1446.71 - absdiff 9832.36 percdiff 154.5266 tig 67 read 655960 pos 9949-20894 NOT confused by 5' edge to read 161482 - best edge read 379496 len 5699 erate 0.0289 score 5534.30 - alt edge len 786 erate 0.0407 score 754.01 - absdiff 4780.29 percdiff 152.0374 tig 67 read 655960 pos 9949-20894 NOT confused by 3' edge to read 559084 - best edge read 533340 len 10661 erate 0.0154 score 10496.82 - alt edge len 3524 erate 0.0270 score 3428.85 - absdiff 7067.97 percdiff 101.5099 tig 67 read 128517 pos 15167-23671 IS confused by 3' edge to read 20290 - best edge read 198702 len 2251 erate 0.0613 score 2113.01 - alt edge len 1590 erate 0.0566 score 1500.01 - absdiff 613.01 percdiff 33.9333 tig 67 read 128517 pos 15167-23671 IS confused by 3' edge to read 20294 - best edge read 198702 len 2251 erate 0.0613 score 2113.01 - alt edge len 1581 erate 0.0544 score 1494.99 - absdiff 618.02 percdiff 34.2583 tig 67 read 128517 pos 15167-23671 IS confused by 3' edge to read 393747 - best edge read 198702 len 2251 erate 0.0613 score 2113.01 - alt edge len 1624 erate 0.0560 score 1533.06 - absdiff 579.96 percdiff 31.8128 tig 67 read 379496 pos 15181-23141 NOT confused by 3' edge to read 20290 - best edge read 470705 len 4399 erate 0.0462 score 4195.77 - alt edge len 1667 erate 0.0474 score 1587.98 - absdiff 2607.78 percdiff 90.1762 tig 67 read 379496 pos 15181-23141 NOT confused by 3' edge to read 20294 - best edge read 470705 len 4399 erate 0.0462 score 4195.77 - alt edge len 1659 erate 0.0476 score 1580.03 - absdiff 2615.73 percdiff 90.5757 tig 67 read 379496 pos 15181-23141 NOT confused by 3' edge to read 393747 - best edge read 470705 len 4399 erate 0.0462 score 4195.77 - alt edge len 1704 erate 0.0523 score 1614.88 - absdiff 2580.89 percdiff 88.8330 tig 67 read 470705 pos 18904-28697 NOT confused by 3' edge to read 24806 - best edge read 198702 len 7554 erate 0.0460 score 7206.52 - alt edge len 4372 erate 0.0656 score 4085.20 - absdiff 3121.32 percdiff 55.2851 tig 67 read 470705 pos 18904-28697 NOT confused by 3' edge to read 24809 - best edge read 198702 len 7554 erate 0.0460 score 7206.52 - alt edge len 4378 erate 0.0621 score 4106.13 - absdiff 3100.39 percdiff 54.8128 tig 67 read 470705 pos 18904-28697 NOT confused by 5' edge to read 116762 - best edge read 379496 len 4467 erate 0.0462 score 4260.62 - alt edge len 1482 erate 0.0368 score 1427.46 - absdiff 2833.16 percdiff 99.6174 tig 67 read 470705 pos 18904-28697 NOT confused by 3' edge to read 453138 - best edge read 198702 len 7554 erate 0.0460 score 7206.52 - alt edge len 1745 erate 0.0413 score 1672.93 - absdiff 5533.58 percdiff 124.6380 tig 67 read 198702 pos 21205-30078 NOT confused by 3' edge to read 537499 - best edge read 470705 len 7569 erate 0.0460 score 7220.83 - alt edge len 4014 erate 0.0353 score 3872.31 - absdiff 3348.52 percdiff 60.3711 tig 67 read 198702 pos 21205-30078 NOT confused by 3' edge to read 545480 - best edge read 470705 len 7569 erate 0.0460 score 7220.83 - alt edge len 2974 erate 0.0489 score 2828.57 - absdiff 4392.25 percdiff 87.4133 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 18083 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 1658 erate 0.0299 score 1608.43 - absdiff 1257.07 percdiff 56.1954 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 64084 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 2959 erate 0.0346 score 2856.62 - absdiff 8.88 percdiff 0.3103 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 491252 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 2936 erate 0.0335 score 2837.64 - absdiff 27.85 percdiff 0.9767 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 688697 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 2553 erate 0.0489 score 2428.16 - absdiff 437.34 percdiff 16.5231 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 688698 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 1222 erate 0.0704 score 1135.97 - absdiff 1729.52 percdiff 86.4445 tig 67 read 92799 pos 32074-38792 IS confused by 3' edge to read 393383 - best edge read 81502 len 1664 erate 0.0668 score 1552.84 - alt edge len 562 erate 0.0605 score 528.00 - absdiff 1024.85 percdiff 98.5029 saved region 6561:30128 - 8 best edges are potentially confused saved region 36004:40660 - 1 best edges are potentially confused break tig 67 into up to 5 pieces: 0 6061 unique (length 6061) 6061 30628 repeat (length 24567) 30628 35504 unique (length 4876) 35504 41160 repeat (length 5656) 41160 48615 unique (length 7455) Creating Unitig 113097 Creating Unitig 113098 Creating Unitig 113099 Creating Unitig 113100 Creating Unitig 113101 For tig 67 unique region 0 6061 - 0/ 13 reads repeat/unique - unitig 113097 created. For tig 67 repeat region 6061 30628 - 234/ 0 reads repeat/unique - unitig 113098 created. For tig 67 unique region 30628 35504 - 0/ 22 reads repeat/unique - unitig 113099 created. For tig 67 repeat region 35504 41160 - 10/ 0 reads repeat/unique - unitig 113100 created. For tig 67 unique region 41160 48615 - 0/ 6 reads repeat/unique - unitig 113101 created. Annotating repeats in reads for tig 68/113047. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 0:1187 - contained in read 437395 0- 4644 discard region 12826:17210 - contained in read 491252 11440- 17210 thickest edges to the repeat regions: saved region 1841:9087 - closest 5' read 437395 ( +1841) 0:4644 ( -4443) saved region 1841:9087 - closest 3' read 537500 ( -606) 2447:9087 ( +0) search for confused edges: tig 68 read 135451 pos 1892-5752 IS confused by 3' edge to read 628982 - best edge read 437395 len 2723 erate 0.0448 score 2601.01 - alt edge len 1293 erate 0.0606 score 1214.64 - absdiff 1386.37 percdiff 72.6673 tig 68 read 537499 pos 1964-9022 NOT confused by 3' edge to read 628982 - best edge read 135451 len 3705 erate 0.0424 score 3547.91 - alt edge len 1224 erate 0.0712 score 1136.85 - absdiff 2411.06 percdiff 102.9319 tig 68 read 18083 pos 5691-15944 IS confused by 5' edge to read 545480 - best edge read 537499 len 3287 erate 0.0432 score 3145.00 - alt edge len 2260 erate 0.0638 score 2115.81 - absdiff 1029.19 percdiff 39.1266 saved region 1841:9087 - 2 best edges are potentially confused break tig 68 into up to 3 pieces: 0 1341 unique (length 1341) 1341 9587 repeat (length 8246) 9587 17210 unique (length 7623) Creating Unitig 113102 Creating Unitig 113103 Creating Unitig 113104 For tig 68 unique region 0 1341 - 0/ 1 reads repeat/unique - unitig 113102 created. For tig 68 repeat region 1341 9587 - 15/ 0 reads repeat/unique - unitig 113103 created. For tig 68 unique region 9587 17210 - 0/ 8 reads repeat/unique - unitig 113104 created. Annotating repeats in reads for tig 71/113047. Annotated with 824 overlaps. Scan reads to discard spanned repeats. discard region 2445:0 - contained in read 112436 0- 6699 discard region 56375:56991 - contained in read 178206 51073- 58145 thickest edges to the repeat regions: saved region 8817:26751 - closest 5' read 667975 ( +0) 8817:20604 ( -6147) saved region 8817:26751 - closest 3' read 18089 ( -2765) 11582:26751 ( +0) saved region 30499:56320 - closest 5' read 91411 ( +0) 30499:54774 ( -1546) saved region 30499:56320 - closest 3' read 88666 (-17256) 47755:57165 ( +845) search for confused edges: tig 71 read 577295 pos 9044-18743 NOT confused by 5' edge to read 10642 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 1075 erate 0.0598 score 1010.72 - absdiff 6418.93 percdiff 152.1009 tig 71 read 577295 pos 9044-18743 IS confused by 5' edge to read 122819 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 6145 erate 0.0288 score 5968.02 - absdiff 1461.62 percdiff 21.8190 tig 71 read 577295 pos 9044-18743 NOT confused by 5' edge to read 234113 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 1121 erate 0.0564 score 1057.78 - absdiff 6371.87 percdiff 150.1485 tig 71 read 577295 pos 9044-18743 NOT confused by 5' edge to read 361190 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 1787 erate 0.0505 score 1696.76 - absdiff 5732.89 percdiff 125.6330 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 10642 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 1750 erate 0.0486 score 1664.95 - absdiff 5564.27 percdiff 125.1217 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 72132 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 1021 erate 0.0539 score 965.97 - absdiff 6263.25 percdiff 152.8519 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 72135 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 1016 erate 0.0653 score 949.66 - absdiff 6279.56 percdiff 153.5557 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 122819 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 4165 erate 0.0277 score 4049.63 - absdiff 3179.59 percdiff 56.3815 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 361190 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 2473 erate 0.0352 score 2385.95 - absdiff 4843.27 percdiff 100.7422 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 576330 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 712 erate 0.0478 score 677.97 - absdiff 6551.25 percdiff 165.7038 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 576331 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 728 erate 0.0481 score 692.98 - absdiff 6536.24 percdiff 165.0106 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 79576 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 2378 erate 0.0678 score 2216.77 - absdiff 11712.55 percdiff 145.0822 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 206125 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1353 erate 0.0504 score 1284.81 - absdiff 12644.51 percdiff 166.2206 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 206401 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1374 erate 0.0512 score 1303.65 - absdiff 12625.67 percdiff 165.7676 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 397303 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1398 erate 0.0446 score 1335.65 - absdiff 12593.67 percdiff 165.0009 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 523060 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 744 erate 0.0581 score 700.77 - absdiff 13228.55 percdiff 180.8402 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 523062 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 744 erate 0.0608 score 698.76 - absdiff 13230.56 percdiff 180.8925 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 523063 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 744 erate 0.0608 score 698.76 - absdiff 13230.56 percdiff 180.8925 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 598696 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1236 erate 0.0525 score 1171.11 - absdiff 12758.21 percdiff 168.9781 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 598699 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1238 erate 0.0605 score 1163.10 - absdiff 12766.22 percdiff 169.1739 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 660854 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 593 erate 0.0458 score 565.84 - absdiff 13363.48 percdiff 184.3854 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 663547 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 2342 erate 0.0730 score 2171.03 - absdiff 11758.29 percdiff 146.0625 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 716092 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 2720 erate 0.0243 score 2653.90 - absdiff 11275.42 percdiff 135.9858 tig 71 read 210514 pos 11396-20436 NOT confused by 5' edge to read 122819 - best edge read 179052 len 8627 erate 0.0367 score 8310.39 - alt edge len 5568 erate 0.0298 score 5402.07 - absdiff 2908.32 percdiff 42.4186 tig 71 read 210514 pos 11396-20436 NOT confused by 5' edge to read 234113 - best edge read 179052 len 8627 erate 0.0367 score 8310.39 - alt edge len 501 erate 0.0383 score 481.81 - absdiff 7828.58 percdiff 178.0800 tig 71 read 210514 pos 11396-20436 NOT confused by 5' edge to read 361190 - best edge read 179052 len 8627 erate 0.0367 score 8310.39 - alt edge len 1186 erate 0.0443 score 1133.46 - absdiff 7176.93 percdiff 151.9916 tig 71 read 18089 pos 11582-26751 NOT confused by 5' edge to read 716092 - best edge read 179052 len 6567 erate 0.0245 score 6406.11 - alt edge len 884 erate 0.0352 score 852.88 - absdiff 5553.23 percdiff 153.0027 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 35570 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2311 erate 0.0646 score 2161.71 - absdiff 6141.94 percdiff 117.3766 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 55464 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2563 erate 0.0525 score 2428.44 - absdiff 5875.20 percdiff 109.4885 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 79576 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2650 erate 0.0514 score 2513.79 - absdiff 5789.86 percdiff 107.0467 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 224425 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 1960 erate 0.0574 score 1847.50 - absdiff 6456.15 percdiff 127.2005 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 663547 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2614 erate 0.0545 score 2471.54 - absdiff 5832.11 percdiff 108.2508 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 35570 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1457 erate 0.0633 score 1364.77 - absdiff 234.90 percdiff 18.8322 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 224425 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1113 erate 0.0557 score 1051.01 - absdiff 78.87 percdiff 7.2327 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 397303 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 826 erate 0.0691 score 768.92 - absdiff 360.95 percdiff 38.0188 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 702839 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1028 erate 0.0539 score 972.59 - absdiff 157.28 percdiff 14.9618 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 717630 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1180 erate 0.0714 score 1095.75 - absdiff 34.13 percdiff 3.0666 saved region 8817:26751 - 6 best edges are potentially confused discard region 30499:56320 - no confusion in best edges break tig 71 into up to 3 pieces: 0 8317 unique (length 8317) 8317 27251 repeat (length 18934) 27251 59024 unique (length 31773) Creating Unitig 113105 Creating Unitig 113106 Creating Unitig 113107 For tig 71 unique region 0 8317 - 0/ 23 reads repeat/unique - unitig 113105 created. For tig 71 repeat region 8317 27251 - 169/ 0 reads repeat/unique - unitig 113106 created. For tig 71 unique region 27251 59024 - 0/ 44 reads repeat/unique - unitig 113107 created. Annotating repeats in reads for tig 72/113047. Annotated with 176 overlaps. Scan reads to discard spanned repeats. discard region 0:1299 - contained in read 574084 0- 6739 discard region 3100:12236 - contained in read 80005 2252- 12236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 73/113047. Annotated with 1929 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 962:20101 - closest 5' read 113253 ( +962) 0:13384 ( -6717) saved region 962:20101 - closest 3' read 502051 ( -8226) 9188:20101 ( +0) search for confused edges: tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 21508 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 942 erate 0.0520 score 893.02 - absdiff 4533.99 percdiff 143.4802 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 52738 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1949 erate 0.0439 score 1863.44 - absdiff 3563.56 percdiff 97.7599 tig 73 read 113253 pos 0-13384 IS confused by 5' edge to read 56594 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 4666 erate 0.0647 score 4364.11 - absdiff 1062.89 percdiff 21.7114 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 130671 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1879 erate 0.0293 score 1823.95 - absdiff 3603.06 percdiff 99.3817 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 140415 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 936 erate 0.0300 score 907.92 - absdiff 4519.08 percdiff 142.6721 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 172419 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1677 erate 0.0491 score 1594.66 - absdiff 3832.34 percdiff 109.1577 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 172422 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1682 erate 0.0599 score 1581.25 - absdiff 3845.75 percdiff 109.7493 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 230528 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 2933 erate 0.0503 score 2785.47 - absdiff 2641.53 percdiff 64.3298 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 230529 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 3169 erate 0.0451 score 3026.08 - absdiff 2400.92 percdiff 56.8059 tig 73 read 113253 pos 0-13384 IS confused by 5' edge to read 340795 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 5631 erate 0.0421 score 5393.93 - absdiff 33.07 percdiff 0.6112 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 536734 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1724 erate 0.0477 score 1641.77 - absdiff 3785.24 percdiff 107.0975 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 574860 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1264 erate 0.0514 score 1199.03 - absdiff 4227.97 percdiff 127.6170 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 638612 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1878 erate 0.0618 score 1761.94 - absdiff 3665.06 percdiff 101.9639 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 638614 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1920 erate 0.0609 score 1803.07 - absdiff 3623.93 percdiff 100.2460 tig 73 read 113253 pos 0-13384 IS confused by 5' edge to read 682536 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 4732 erate 0.0379 score 4552.66 - absdiff 874.35 percdiff 17.5225 tig 73 read 664057 pos 2533-11080 NOT confused by 3' edge to read 51480 - best edge read 350785 len 7529 erate 0.0665 score 7028.32 - alt edge len 962 erate 0.0705 score 894.18 - absdiff 6134.14 percdiff 154.8537 tig 73 read 664057 pos 2533-11080 NOT confused by 5' edge to read 190042 - best edge read 664058 len 8432 erate 0.0310 score 8170.61 - alt edge len 2784 erate 0.0604 score 2615.85 - absdiff 5554.76 percdiff 102.9951 tig 73 read 664057 pos 2533-11080 NOT confused by 3' edge to read 230529 - best edge read 350785 len 7529 erate 0.0665 score 7028.32 - alt edge len 1105 erate 0.0662 score 1031.85 - absdiff 5996.47 percdiff 148.7927 tig 73 read 664057 pos 2533-11080 NOT confused by 5' edge to read 566357 - best edge read 664058 len 8432 erate 0.0310 score 8170.61 - alt edge len 769 erate 0.0501 score 730.47 - absdiff 7440.13 percdiff 167.1737 tig 73 read 664058 pos 2823-11368 NOT confused by 5' edge to read 51480 - best edge read 664057 len 8400 erate 0.0310 score 8139.60 - alt edge len 954 erate 0.0728 score 884.55 - absdiff 7255.05 percdiff 160.7919 tig 73 read 664058 pos 2823-11368 NOT confused by 5' edge to read 230529 - best edge read 664057 len 8400 erate 0.0310 score 8139.60 - alt edge len 1098 erate 0.0714 score 1019.60 - absdiff 7120.00 percdiff 155.4720 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 27915 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 2498 erate 0.0651 score 2335.38 - absdiff 4720.95 percdiff 100.5344 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 52738 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 2037 erate 0.0594 score 1916.00 - absdiff 4505.98 percdiff 108.0832 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 56594 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 3987 erate 0.0614 score 3742.20 - absdiff 3314.13 percdiff 61.3811 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 93171 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 3642 erate 0.0544 score 3443.88 - absdiff 3612.45 percdiff 68.8073 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 130671 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1964 erate 0.0474 score 1870.91 - absdiff 4551.08 percdiff 109.7585 tig 73 read 350785 pos 5270-13186 IS confused by 3' edge to read 140415 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 6789 erate 0.0534 score 6426.47 - absdiff 4.49 percdiff 0.0698 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 172419 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1758 erate 0.0552 score 1660.96 - absdiff 4761.02 percdiff 117.8042 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 172422 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1763 erate 0.0677 score 1643.64 - absdiff 4778.34 percdiff 118.4864 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 190042 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1874 erate 0.0512 score 1778.05 - absdiff 5278.28 percdiff 119.4940 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 196098 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1674 erate 0.0694 score 1557.82 - absdiff 5498.50 percdiff 127.6621 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 196101 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1738 erate 0.0725 score 1611.99 - absdiff 5444.33 percdiff 125.6144 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 230528 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 3025 erate 0.0587 score 2847.43 - absdiff 3574.55 percdiff 77.1257 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 230529 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1836 erate 0.0486 score 1746.77 - absdiff 5309.56 percdiff 120.6293 tig 73 read 350785 pos 5270-13186 IS confused by 3' edge to read 340795 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 5746 erate 0.0545 score 5432.84 - absdiff 989.14 percdiff 16.6875 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 422794 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 2671 erate 0.0569 score 2519.02 - absdiff 4537.31 percdiff 94.7706 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 536734 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1805 erate 0.0542 score 1707.17 - absdiff 4714.81 percdiff 115.9977 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 574860 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1348 erate 0.0619 score 1264.56 - absdiff 5157.42 percdiff 134.1936 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 590994 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1793 erate 0.0626 score 1680.76 - absdiff 5375.57 percdiff 123.0518 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 590995 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1794 erate 0.0558 score 1693.89 - absdiff 5362.43 percdiff 122.5668 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 638612 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1963 erate 0.0714 score 1822.84 - absdiff 4599.14 percdiff 111.5643 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 638614 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 2006 erate 0.0705 score 1864.58 - absdiff 4557.40 percdiff 109.9951 tig 73 read 350785 pos 5270-13186 IS confused by 3' edge to read 682536 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 4866 erate 0.0477 score 4633.89 - absdiff 1788.09 percdiff 32.3464 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 716843 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 2940 erate 0.0388 score 2825.93 - absdiff 4230.40 percdiff 85.6161 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 716844 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 3035 erate 0.0461 score 2895.09 - absdiff 4161.24 percdiff 83.6311 tig 73 read 78001 pos 5876-12960 NOT confused by 5' edge to read 130671 - best edge read 113252 len 6347 erate 0.0534 score 6008.07 - alt edge len 2493 erate 0.0632 score 2335.44 - absdiff 3672.63 percdiff 88.0355 tig 73 read 78001 pos 5876-12960 NOT confused by 5' edge to read 230529 - best edge read 113252 len 6347 erate 0.0534 score 6008.07 - alt edge len 3779 erate 0.0708 score 3511.45 - absdiff 2496.62 percdiff 52.4527 tig 73 read 398969 pos 5913-15555 NOT confused by 5' edge to read 66611 - best edge read 78001 len 5206 erate 0.0585 score 4901.45 - alt edge len 2730 erate 0.0607 score 2564.29 - absdiff 2337.16 percdiff 62.6103 tig 73 read 398969 pos 5913-15555 NOT confused by 5' edge to read 130671 - best edge read 78001 len 5206 erate 0.0585 score 4901.45 - alt edge len 742 erate 0.0424 score 710.54 - absdiff 4190.91 percdiff 149.3556 tig 73 read 398969 pos 5913-15555 NOT confused by 3' edge to read 196098 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 547 erate 0.0585 score 515.00 - absdiff 2124.91 percdiff 134.7048 tig 73 read 398969 pos 5913-15555 IS confused by 3' edge to read 196101 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 610 erate 0.0738 score 564.98 - absdiff 2074.93 percdiff 129.4850 tig 73 read 398969 pos 5913-15555 IS confused by 3' edge to read 230529 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 2673 erate 0.0645 score 2500.59 - absdiff 139.32 percdiff 5.4203 tig 73 read 398969 pos 5913-15555 IS confused by 3' edge to read 590995 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 660 erate 0.0742 score 611.03 - absdiff 2028.88 percdiff 124.8182 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 93171 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2705 erate 0.0574 score 2549.73 - absdiff 3879.82 percdiff 86.4171 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 130671 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 519 erate 0.0717 score 481.79 - absdiff 5947.76 percdiff 172.1161 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 190042 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 902 erate 0.0744 score 834.89 - absdiff 5594.66 percdiff 154.0286 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 196098 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 700 erate 0.0415 score 670.95 - absdiff 5758.60 percdiff 162.2027 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 196101 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 764 erate 0.0485 score 726.95 - absdiff 5702.60 percdiff 159.3686 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 230529 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 864 erate 0.0461 score 824.17 - absdiff 5605.38 percdiff 154.5519 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 422794 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 1731 erate 0.0602 score 1626.79 - absdiff 4802.75 percdiff 119.2292 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 590994 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 819 erate 0.0596 score 770.19 - absdiff 5659.36 percdiff 157.2102 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 590995 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 820 erate 0.0523 score 777.11 - absdiff 5652.43 percdiff 156.8669 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 682536 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2523 erate 0.0569 score 2379.44 - absdiff 4050.11 percdiff 91.9540 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 716843 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2005 erate 0.0404 score 1924.00 - absdiff 4505.55 percdiff 107.8716 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 716844 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2099 erate 0.0418 score 2011.26 - absdiff 4418.29 percdiff 104.6887 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 93171 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1692 erate 0.0382 score 1627.37 - absdiff 3866.58 percdiff 108.5918 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 161947 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1692 erate 0.0547 score 1599.45 - absdiff 3894.50 percdiff 109.8063 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 422794 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 719 erate 0.0499 score 683.12 - absdiff 4810.82 percdiff 155.7640 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 504829 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1573 erate 0.0691 score 1464.31 - absdiff 4029.64 percdiff 115.8233 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 504830 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1586 erate 0.0686 score 1477.20 - absdiff 4016.74 percdiff 115.2391 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 516253 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 663 erate 0.0682 score 617.78 - absdiff 4876.16 percdiff 159.5673 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 516254 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 661 erate 0.0720 score 613.41 - absdiff 4880.54 percdiff 159.8249 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 595206 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1856 erate 0.0738 score 1719.03 - absdiff 3774.92 percdiff 104.6702 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 606197 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1606 erate 0.0654 score 1500.97 - absdiff 3992.98 percdiff 114.1680 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 606199 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1606 erate 0.0642 score 1502.89 - absdiff 3991.05 percdiff 114.0815 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 716843 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 991 erate 0.0612 score 930.35 - absdiff 4563.59 percdiff 142.0730 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 716844 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1085 erate 0.0622 score 1017.51 - absdiff 4476.43 percdiff 137.4940 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 9364 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 843 erate 0.0689 score 784.92 - absdiff 7381.41 percdiff 164.9248 tig 73 read 113252 pos 7267-16198 IS confused by 5' edge to read 66891 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 4442 erate 0.0664 score 4147.05 - absdiff 1918.15 percdiff 37.5657 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 110652 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 6136 erate 0.0667 score 5726.73 - absdiff 2439.60 percdiff 35.1197 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 140415 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1582 erate 0.0637 score 1481.23 - absdiff 4583.97 percdiff 121.4873 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 161947 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 1245 erate 0.0582 score 1172.54 - absdiff 6993.79 percdiff 149.7780 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 196098 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1613 erate 0.0590 score 1517.83 - absdiff 4547.37 percdiff 119.9353 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 196101 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1677 erate 0.0615 score 1573.86 - absdiff 4491.34 percdiff 117.5886 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 230529 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1766 erate 0.0610 score 1658.27 - absdiff 4406.93 percdiff 114.1177 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 340795 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 979 erate 0.0504 score 929.66 - absdiff 7236.67 percdiff 159.1179 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 590994 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1728 erate 0.0671 score 1612.05 - absdiff 4453.15 percdiff 116.0089 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 590995 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1729 erate 0.0612 score 1623.19 - absdiff 4442.02 percdiff 115.5513 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 601472 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1774 erate 0.0638 score 1660.82 - absdiff 4404.38 percdiff 114.0143 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 601474 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1784 erate 0.0595 score 1677.85 - absdiff 4387.35 percdiff 113.3235 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 601475 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1793 erate 0.0677 score 1671.61 - absdiff 4393.59 percdiff 113.5761 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 606199 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 1027 erate 0.0652 score 960.04 - absdiff 7206.29 percdiff 157.9224 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 629732 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 955 erate 0.0565 score 901.04 - absdiff 7265.29 percdiff 160.2512 saved region 962:20101 - 10 best edges are potentially confused break tig 73 into up to 3 pieces: 0 462 unique (length 462) 462 20601 repeat (length 20139) 20601 40111 unique (length 19510) Creating Unitig 113108 Creating Unitig 113109 Creating Unitig 113110 For tig 73 unique region 0 462 - 0/ 1 reads repeat/unique - unitig 113108 created. For tig 73 repeat region 462 20601 - 95/ 0 reads repeat/unique - unitig 113109 created. For tig 73 unique region 20601 40111 - 0/ 35 reads repeat/unique - unitig 113110 created. Annotating repeats in reads for tig 74/113047. Annotated with 99 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 658:12783 - closest 5' read 568372 ( +89) 569:4023 ( -8760) saved region 658:12783 - closest 3' read 583787 ( -1591) 2249:12783 ( +0) search for confused edges: tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 429334 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 619 erate 0.0535 score 585.88 - absdiff 6299.76 percdiff 168.6338 tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 623659 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 558 erate 0.0559 score 526.81 - absdiff 6358.83 percdiff 171.5717 tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 656334 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 566 erate 0.0673 score 527.91 - absdiff 6357.73 percdiff 171.5166 tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 656335 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 532 erate 0.0546 score 502.95 - absdiff 6382.69 percdiff 172.7714 discard region 658:12783 - no confusion in best edges Annotating repeats in reads for tig 77/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 23023:27496 - contained in read 627191 18195- 28241 discard region 27887:28528 - contained in read 404113 23034- 30462 discard region 30895:31546 - contained in read 306859 25804- 33572 thickest edges to the repeat regions: saved region 13362:19053 - closest read 86810 ( +1052) 12310:19053 ( +0) (contained) saved region 13362:19053 - closest 5' read 86810 ( +1052) 12310:19053 ( +0) saved region 13362:19053 - closest 3' read 86810 ( +1052) 12310:19053 ( +0) search for confused edges: discard region 13362:19053 - no confusion in best edges Annotating repeats in reads for tig 78/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 0:895 - contained in read 454809 0- 5384 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 80/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2468:0 - contained in read 190267 0- 6577 thickest edges to the repeat regions: saved region 16195:21900 - closest read 240880 ( +1145) 15050:21900 ( +0) (contained) saved region 16195:21900 - closest 5' read 240880 ( +1145) 15050:21900 ( +0) saved region 16195:21900 - closest 3' read 240880 ( +1145) 15050:21900 ( +0) search for confused edges: tig 80 read 302484 pos 19615-27291 IS confused by 3' edge to read 370094 - best edge read 240880 len 2273 erate 0.0540 score 2150.26 - alt edge len 1834 erate 0.0648 score 1715.16 - absdiff 435.10 percdiff 22.5125 saved region 16195:21900 - 1 best edges are potentially confused break tig 80 into up to 3 pieces: 0 15695 unique (length 15695) 15695 22400 repeat (length 6705) 22400 41655 unique (length 19255) Creating Unitig 113111 Creating Unitig 113112 Creating Unitig 113113 For tig 80 unique region 0 15695 - 0/ 48 reads repeat/unique - unitig 113111 created. For tig 80 repeat region 15695 22400 - 5/ 0 reads repeat/unique - unitig 113112 created. For tig 80 unique region 22400 41655 - 0/ 52 reads repeat/unique - unitig 113113 created. Annotating repeats in reads for tig 82/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 40534:41966 - contained in read 714666 35117- 43793 discard region 42317:43156 - contained in read 714666 35117- 43793 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 84/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 16781:17936 - contained in read 20816 10218- 19400 discard region 19246:19847 - contained in read 583001 16450- 22658 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 87/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3762:3044 - contained in read 356025 0- 4011 discard region 4561:3166 - contained in read 356025 0- 4011 discard region 4605:3449 - contained in read 356025 0- 4011 thickest edges to the repeat regions: saved region 22435:26669 - closest read 163535 ( +0) 22435:28068 ( +1399) (contained) saved region 22435:26669 - closest 5' read 163535 ( +0) 22435:28068 ( +1399) saved region 22435:26669 - closest 3' read 163535 ( +0) 22435:28068 ( +1399) search for confused edges: discard region 22435:26669 - no confusion in best edges Annotating repeats in reads for tig 88/113047. Annotated with 165 overlaps. Scan reads to discard spanned repeats. discard region 26235:34454 - contained in read 140145 17063- 34454 thickest edges to the repeat regions: saved region 17033:24910 - closest 5' read 118872 ( +0) 17033:18698 ( -6212) saved region 17033:24910 - closest 3' read 605165 ( -9) 17042:25705 ( +795) search for confused edges: discard region 17033:24910 - no confusion in best edges Annotating repeats in reads for tig 89/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8331 - closest 5' read 647211 ( +0) 0:8206 ( -125) saved region 0:8331 - closest 3' read 539085 ( -2160) 2160:8331 ( +0) search for confused edges: tig 89 read 647211 pos 0-8206 IS confused by 3' edge to read 243763 - best edge read 539085 len 6033 erate 0.0102 score 5971.46 - alt edge len 5704 erate 0.0124 score 5633.27 - absdiff 338.19 percdiff 5.8285 tig 89 read 647211 pos 0-8206 NOT confused by 3' edge to read 399098 - best edge read 539085 len 6033 erate 0.0102 score 5971.46 - alt edge len 2114 erate 0.0410 score 2027.33 - absdiff 3944.14 percdiff 98.6184 tig 89 read 111829 pos 2233-12239 NOT confused by 3' edge to read 121373 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 938 erate 0.0128 score 925.99 - absdiff 4702.78 percdiff 143.4919 tig 89 read 111829 pos 2233-12239 IS confused by 3' edge to read 121374 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 5402 erate 0.0169 score 5310.71 - absdiff 318.06 percdiff 5.8150 tig 89 read 111829 pos 2233-12239 IS confused by 3' edge to read 549966 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 3592 erate 0.0160 score 3534.53 - absdiff 2094.24 percdiff 45.7093 tig 89 read 111829 pos 2233-12239 NOT confused by 3' edge to read 605308 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 1168 erate 0.0180 score 1146.98 - absdiff 4481.79 percdiff 132.2893 saved region 0:8331 - 3 best edges are potentially confused break tig 89 into up to 2 pieces: 0 8831 repeat (length 8831) 8831 12239 unique (length 3408) Creating Unitig 113114 Creating Unitig 113115 For tig 89 repeat region 0 8831 - 17/ 0 reads repeat/unique - unitig 113114 created. For tig 89 unique region 8831 12239 - 0/ 2 reads repeat/unique - unitig 113115 created. Annotating repeats in reads for tig 90/113047. Annotated with 309 overlaps. Scan reads to discard spanned repeats. discard region 603:3791 - contained in read 642385 0- 5883 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 91/113047. Annotated with 1274 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:20249 - closest 5' read 98427 ( +0) 0:8640 (-11609) saved region 0:20249 - closest 3' read 505572 (-11437) 11437:25636 ( +5387) search for confused edges: tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 36467 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3267 erate 0.0350 score 3152.65 - absdiff 5091.38 percdiff 89.3484 tig 91 read 132715 pos 170-9606 IS confused by 5' edge to read 98426 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 6463 erate 0.0312 score 6261.35 - absdiff 1982.68 percdiff 27.3372 tig 91 read 132715 pos 170-9606 NOT confused by 3' edge to read 118971 - best edge read 542862 len 8104 erate 0.0474 score 7719.87 - alt edge len 634 erate 0.0473 score 604.01 - absdiff 7115.86 percdiff 170.9745 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 377979 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3356 erate 0.0389 score 3225.45 - absdiff 5018.59 percdiff 87.5119 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 483829 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3278 erate 0.0693 score 3050.83 - absdiff 5193.20 percdiff 91.9568 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 483830 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3285 erate 0.0670 score 3064.91 - absdiff 5179.13 percdiff 91.5936 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 505572 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3657 erate 0.0349 score 3529.37 - absdiff 4714.67 percdiff 80.0901 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 505574 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3021 erate 0.0360 score 2912.24 - absdiff 5331.79 percdiff 95.5837 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 510754 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 6337 erate 0.0461 score 6044.86 - absdiff 2199.17 percdiff 30.7816 tig 91 read 132715 pos 170-9606 IS confused by 5' edge to read 531680 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 6460 erate 0.0298 score 6267.49 - absdiff 1976.55 percdiff 27.2410 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 621497 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 1123 erate 0.0653 score 1049.67 - absdiff 7194.37 percdiff 154.8224 tig 91 read 132715 pos 170-9606 NOT confused by 3' edge to read 644969 - best edge read 542862 len 8104 erate 0.0474 score 7719.87 - alt edge len 561 erate 0.0491 score 533.45 - absdiff 7186.42 percdiff 174.1459 tig 91 read 542862 pos 1394-9745 NOT confused by 5' edge to read 98426 - best edge read 132715 len 8087 erate 0.0474 score 7703.68 - alt edge len 5247 erate 0.0714 score 4872.36 - absdiff 2831.31 percdiff 45.0271 tig 91 read 542862 pos 1394-9745 NOT confused by 3' edge to read 118971 - best edge read 421121 len 8041 erate 0.0314 score 7788.51 - alt edge len 795 erate 0.0227 score 776.95 - absdiff 7011.56 percdiff 163.7169 tig 91 read 542862 pos 1394-9745 NOT confused by 5' edge to read 531680 - best edge read 132715 len 8087 erate 0.0474 score 7703.68 - alt edge len 5244 erate 0.0694 score 4880.07 - absdiff 2823.61 percdiff 44.8771 tig 91 read 542862 pos 1394-9745 NOT confused by 3' edge to read 644969 - best edge read 421121 len 8041 erate 0.0314 score 7788.51 - alt edge len 711 erate 0.0527 score 673.53 - absdiff 7114.98 percdiff 168.1623 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 36467 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1871 erate 0.0327 score 1809.82 - absdiff 5969.01 percdiff 124.5016 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 98426 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 5059 erate 0.0371 score 4871.31 - absdiff 2907.52 percdiff 45.9681 tig 91 read 421121 pos 1583-10055 NOT confused by 3' edge to read 118971 - best edge read 24956 len 7983 erate 0.0419 score 7648.51 - alt edge len 1112 erate 0.0388 score 1068.85 - absdiff 6579.66 percdiff 150.9552 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 377979 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1960 erate 0.0338 score 1893.75 - absdiff 5885.07 percdiff 121.6857 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 483829 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 2195 erate 0.0698 score 2041.79 - absdiff 5737.04 percdiff 116.8366 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 483830 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 2202 erate 0.0642 score 2060.63 - absdiff 5718.20 percdiff 116.2299 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 505572 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1947 erate 0.0305 score 1887.62 - absdiff 5891.21 percdiff 121.8899 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 505574 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 2250 erate 0.0303 score 2181.82 - absdiff 5597.00 percdiff 112.3822 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 510754 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 4934 erate 0.0480 score 4697.17 - absdiff 3081.66 percdiff 49.4014 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 531680 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 5056 erate 0.0367 score 4870.44 - absdiff 2908.38 percdiff 45.9850 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 553106 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 4812 erate 0.0655 score 4496.81 - absdiff 3282.01 percdiff 53.4720 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 553107 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 4817 erate 0.0584 score 4535.69 - absdiff 3243.14 percdiff 52.6718 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 621497 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1300 erate 0.0639 score 1216.93 - absdiff 6561.90 percdiff 145.8887 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 621498 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1306 erate 0.0545 score 1234.82 - absdiff 6544.00 percdiff 145.2021 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 660755 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 5226 erate 0.0665 score 4878.47 - absdiff 2900.36 percdiff 45.8290 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 98426 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 4710 erate 0.0458 score 4494.28 - absdiff 3251.00 percdiff 53.1228 tig 91 read 24956 pos 1935-10706 NOT confused by 3' edge to read 118971 - best edge read 119745 len 6195 erate 0.0390 score 5953.39 - alt edge len 1695 erate 0.0541 score 1603.30 - absdiff 4350.09 percdiff 115.1322 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 377979 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 1600 erate 0.0534 score 1514.56 - absdiff 6230.72 percdiff 134.5751 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 505572 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 1900 erate 0.0476 score 1809.56 - absdiff 5935.72 percdiff 124.2453 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 505574 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 1890 erate 0.0468 score 1801.55 - absdiff 5943.73 percdiff 124.5174 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 531680 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 4707 erate 0.0457 score 4491.89 - absdiff 3253.39 percdiff 53.1723 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 36467 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 1787 erate 0.0456 score 1705.51 - absdiff 6345.14 percdiff 130.0744 tig 91 read 119745 pos 4456-13122 NOT confused by 3' edge to read 98426 - best edge read 24956 len 6160 erate 0.0390 score 5919.76 - alt edge len 2238 erate 0.0569 score 2110.66 - absdiff 3809.10 percdiff 94.8668 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 118971 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 4056 erate 0.0496 score 3854.82 - absdiff 4195.83 percdiff 70.4857 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 377979 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 1874 erate 0.0499 score 1780.49 - absdiff 6270.16 percdiff 127.5572 tig 91 read 119745 pos 4456-13122 NOT confused by 3' edge to read 531680 - best edge read 24956 len 6160 erate 0.0390 score 5919.76 - alt edge len 2235 erate 0.0592 score 2102.69 - absdiff 3817.07 percdiff 95.1598 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 621497 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 1528 erate 0.0542 score 1445.18 - absdiff 6605.47 percdiff 139.1235 tig 91 read 550563 pos 4720-16710 IS confused by 3' edge to read 36467 - best edge read 505572 len 5134 erate 0.0316 score 4971.77 - alt edge len 3179 erate 0.0447 score 3036.90 - absdiff 1934.87 percdiff 48.3193 tig 91 read 550563 pos 4720-16710 NOT confused by 5' edge to read 98426 - best edge read 119745 len 8503 erate 0.0411 score 8153.53 - alt edge len 2123 erate 0.0485 score 2020.03 - absdiff 6133.49 percdiff 120.5771 tig 91 read 550563 pos 4720-16710 IS confused by 3' edge to read 377979 - best edge read 505572 len 5134 erate 0.0316 score 4971.77 - alt edge len 3579 erate 0.0416 score 3430.11 - absdiff 1541.65 percdiff 36.6978 tig 91 read 550563 pos 4720-16710 NOT confused by 5' edge to read 531680 - best edge read 119745 len 8503 erate 0.0411 score 8153.53 - alt edge len 2120 erate 0.0519 score 2009.97 - absdiff 6143.55 percdiff 120.8945 tig 91 read 550563 pos 4720-16710 NOT confused by 3' edge to read 621498 - best edge read 505572 len 5134 erate 0.0316 score 4971.77 - alt edge len 1368 erate 0.0658 score 1277.99 - absdiff 3693.78 percdiff 118.2057 saved region 0:20249 - 4 best edges are potentially confused break tig 91 into up to 2 pieces: 0 20749 repeat (length 20749) 20749 33104 unique (length 12355) Creating Unitig 113116 Creating Unitig 113117 For tig 91 repeat region 0 20749 - 117/ 0 reads repeat/unique - unitig 113116 created. For tig 91 unique region 20749 33104 - 0/ 10 reads repeat/unique - unitig 113117 created. Annotating repeats in reads for tig 93/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 94/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5286:13511 - closest 5' read 204117 ( +1151) 4135:9843 ( -3668) saved region 5286:13511 - closest 3' read 199802 ( -1279) 6565:15060 ( +1549) search for confused edges: discard region 5286:13511 - no confusion in best edges Annotating repeats in reads for tig 95/113047. Annotated with 725 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2845:14359 - closest 5' read 489155 ( +0) 2845:11940 ( -2419) saved region 2845:14359 - closest 3' read 573416 ( -7986) 10831:14359 ( +0) search for confused edges: tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 35387 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 1077 erate 0.0690 score 1002.69 - absdiff 4959.92 percdiff 142.4181 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 362081 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 867 erate 0.0554 score 818.97 - absdiff 5143.64 percdiff 151.6945 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 379026 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 2758 erate 0.0723 score 2558.60 - absdiff 3404.01 percdiff 79.8950 tig 95 read 635145 pos 41-9108 IS confused by 3' edge to read 464866 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 4570 erate 0.0679 score 4259.70 - absdiff 1702.91 percdiff 33.3175 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 519267 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 2589 erate 0.0505 score 2458.26 - absdiff 3504.35 percdiff 83.2302 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 600399 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 2766 erate 0.0651 score 2585.93 - absdiff 3376.67 percdiff 79.0000 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 677214 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 1817 erate 0.0696 score 1690.54 - absdiff 4272.07 percdiff 111.6422 tig 95 read 532038 pos 3469-10586 NOT confused by 3' edge to read 362081 - best edge read 489155 len 5516 erate 0.0693 score 5133.74 - alt edge len 1748 erate 0.0716 score 1622.84 - absdiff 3510.90 percdiff 103.9252 tig 95 read 532038 pos 3469-10586 IS confused by 3' edge to read 519267 - best edge read 489155 len 5516 erate 0.0693 score 5133.74 - alt edge len 5253 erate 0.0696 score 4887.39 - absdiff 246.35 percdiff 4.9166 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 99031 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1209 erate 0.0645 score 1131.02 - absdiff 1173.86 percdiff 68.3290 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 99034 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1211 erate 0.0677 score 1129.02 - absdiff 1175.86 percdiff 68.4856 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 144991 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 604 erate 0.0646 score 564.98 - absdiff 1739.89 percdiff 121.2530 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 159146 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 550 erate 0.0364 score 529.98 - absdiff 1774.90 percdiff 125.2195 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 247879 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1377 erate 0.0541 score 1302.50 - absdiff 1002.37 percdiff 55.5734 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 302167 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1155 erate 0.0470 score 1100.71 - absdiff 1959.67 percdiff 94.1901 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 447228 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 2333 erate 0.0728 score 2163.16 - absdiff 897.23 percdiff 34.3534 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 464241 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1450 erate 0.0353 score 1398.82 - absdiff 1661.57 percdiff 74.5234 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 464242 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1451 erate 0.0380 score 1395.86 - absdiff 1664.53 percdiff 74.7053 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 506396 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1116 erate 0.0672 score 1041.00 - absdiff 1263.87 percdiff 75.5479 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 516392 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1089 erate 0.0744 score 1007.98 - absdiff 1296.90 percdiff 78.2949 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 575114 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1842 erate 0.0453 score 1758.56 - absdiff 1301.83 percdiff 54.0297 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 679773 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 2404 erate 0.0616 score 2255.91 - absdiff 48.96 percdiff 2.1471 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 679774 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 2412 erate 0.0595 score 2268.49 - absdiff 36.39 percdiff 1.5914 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 692155 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 999 erate 0.0552 score 943.86 - absdiff 1361.02 percdiff 83.7878 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 109123 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1035 erate 0.0630 score 969.80 - absdiff 1343.50 percdiff 81.8437 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 109124 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1043 erate 0.0510 score 989.81 - absdiff 1323.49 percdiff 80.1362 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 247879 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1036 erate 0.0668 score 966.80 - absdiff 1346.50 percdiff 82.1015 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 464241 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 595 erate 0.0659 score 555.79 - absdiff 1757.51 percdiff 122.5134 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 464242 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 596 erate 0.0658 score 556.78 - absdiff 1756.51 percdiff 122.4017 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 464864 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1031 erate 0.0691 score 959.76 - absdiff 1353.54 percdiff 82.7080 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 519267 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1077 erate 0.0605 score 1011.84 - absdiff 1301.46 percdiff 78.2798 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 645307 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 908 erate 0.0519 score 860.87 - absdiff 1452.42 percdiff 91.5151 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 685153 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 692 erate 0.0653 score 646.81 - absdiff 1666.49 percdiff 112.5962 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 691345 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 2401 erate 0.0477 score 2286.47 - absdiff 26.83 percdiff 1.1664 saved region 2845:14359 - 27 best edges are potentially confused break tig 95 into up to 3 pieces: 0 2345 unique (length 2345) 2345 14859 repeat (length 12514) 14859 16028 unique (length 1169) Creating Unitig 113118 Creating Unitig 113119 Creating Unitig 113120 For tig 95 unique region 0 2345 - 0/ 4 reads repeat/unique - unitig 113118 created. For tig 95 repeat region 2345 14859 - 56/ 0 reads repeat/unique - unitig 113119 created. For tig 95 unique region 14859 16028 - 0/ 1 reads repeat/unique - unitig 113120 created. Annotating repeats in reads for tig 98/113047. Annotated with 304 overlaps. Scan reads to discard spanned repeats. discard region 6919:7655 - contained in read 71469 0- 8656 discard region 20617:21339 - contained in read 588173 11831- 24510 thickest edges to the repeat regions: saved region 7759:19478 - closest read 198934 ( +394) 7365:21702 ( +2224) (contained) saved region 7759:19478 - closest read 198935 ( +91) 7668:20523 ( +1045) (contained) saved region 7759:19478 - closest read 198933 ( +83) 7676:21715 ( +2237) (contained) saved region 7759:19478 - closest 5' read 198933 ( +83) 7676:21715 ( +2237) saved region 7759:19478 - closest 3' read 198934 ( +394) 7365:21702 ( +2224) saved region 23959:31146 - closest read 479939 ( +274) 23685:31146 ( +0) (contained) saved region 23959:31146 - closest 5' read 479939 ( +274) 23685:31146 ( +0) saved region 23959:31146 - closest 3' read 479939 ( +274) 23685:31146 ( +0) saved region 36855:42264 - closest 5' read 56209 ( +2498) 34357:41733 ( -531) saved region 36855:42264 - closest 3' read 400474 ( -1413) 38268:44115 ( +1851) search for confused edges: discard region 7759:19478 - no confusion in best edges discard region 23959:31146 - no confusion in best edges discard region 36855:42264 - no confusion in best edges Annotating repeats in reads for tig 99/113047. Annotated with 79 overlaps. Scan reads to discard spanned repeats. discard region 0:8021 - contained in read 53723 0- 8647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 101/113047. Annotated with 964 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19172:45533 - closest 5' read 140436 ( +863) 18309:25551 (-19982) saved region 19172:45533 - closest 3' read 566042 (-18224) 37396:47477 ( +1944) search for confused edges: tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 209300 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 1791 erate 0.0408 score 1717.93 - absdiff 1458.85 percdiff 59.6092 tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 558385 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 1450 erate 0.0656 score 1354.88 - absdiff 1821.89 percdiff 80.4075 tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 669557 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 2632 erate 0.0491 score 2502.77 - absdiff 674.01 percdiff 23.7345 tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 669560 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 2660 erate 0.0455 score 2538.97 - absdiff 637.80 percdiff 22.3175 tig 101 read 591678 pos 27278-34612 NOT confused by 3' edge to read 109796 - best edge read 699198 len 5679 erate 0.0451 score 5422.88 - alt edge len 838 erate 0.0706 score 778.84 - absdiff 4644.04 percdiff 149.7663 tig 101 read 591678 pos 27278-34612 NOT confused by 3' edge to read 305539 - best edge read 699198 len 5679 erate 0.0451 score 5422.88 - alt edge len 2129 erate 0.0701 score 1979.76 - absdiff 3443.12 percdiff 93.0242 tig 101 read 591678 pos 27278-34612 NOT confused by 3' edge to read 480956 - best edge read 699198 len 5679 erate 0.0451 score 5422.88 - alt edge len 1552 erate 0.0645 score 1451.90 - absdiff 3970.98 percdiff 115.5233 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 109796 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 1332 erate 0.0563 score 1257.01 - absdiff 4640.12 percdiff 129.7185 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 305539 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 1549 erate 0.0638 score 1450.17 - absdiff 4446.96 percdiff 121.0500 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 307211 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 2254 erate 0.0730 score 2089.46 - absdiff 3807.67 percdiff 95.3517 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 480956 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 1869 erate 0.0460 score 1783.03 - absdiff 4114.10 percdiff 107.1359 tig 101 read 199241 pos 30157-37627 NOT confused by 5' edge to read 127539 - best edge read 71659 len 7248 erate 0.0365 score 6983.45 - alt edge len 651 erate 0.0483 score 619.56 - absdiff 6363.89 percdiff 167.4046 tig 101 read 199241 pos 30157-37627 NOT confused by 3' edge to read 221588 - best edge read 642427 len 6777 erate 0.0305 score 6570.30 - alt edge len 565 erate 0.0373 score 543.93 - absdiff 6026.38 percdiff 169.4176 tig 101 read 567068 pos 32791-40984 NOT confused by 3' edge to read 110947 - best edge read 699636 len 6666 erate 0.0279 score 6480.02 - alt edge len 1758 erate 0.0353 score 1695.94 - absdiff 4784.08 percdiff 117.0279 tig 101 read 578180 pos 34428-43878 NOT confused by 5' edge to read 110947 - best edge read 578178 len 9345 erate 0.0218 score 9141.28 - alt edge len 514 erate 0.0409 score 492.98 - absdiff 8648.30 percdiff 179.5323 tig 101 read 578178 pos 34431-43866 NOT confused by 5' edge to read 110947 - best edge read 567068 len 7001 erate 0.0627 score 6562.04 - alt edge len 515 erate 0.0408 score 493.99 - absdiff 6068.05 percdiff 171.9962 tig 101 read 578179 pos 34440-43901 NOT confused by 3' edge to read 110947 - best edge read 578180 len 9360 erate 0.0212 score 9161.57 - alt edge len 502 erate 0.0361 score 483.88 - absdiff 8677.69 percdiff 179.9334 tig 101 read 566042 pos 37396-47477 NOT confused by 3' edge to read 226964 - best edge read 578179 len 6498 erate 0.0647 score 6077.58 - alt edge len 582 erate 0.0311 score 563.90 - absdiff 5513.68 percdiff 166.0377 saved region 19172:45533 - 4 best edges are potentially confused break tig 101 into up to 3 pieces: 0 18672 unique (length 18672) 18672 46033 repeat (length 27361) 46033 54155 unique (length 8122) Creating Unitig 113121 Creating Unitig 113122 Creating Unitig 113123 For tig 101 unique region 0 18672 - 0/ 43 reads repeat/unique - unitig 113121 created. For tig 101 repeat region 18672 46033 - 75/ 0 reads repeat/unique - unitig 113122 created. For tig 101 unique region 46033 54155 - 0/ 7 reads repeat/unique - unitig 113123 created. Annotating repeats in reads for tig 102/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 34393:36897 - contained in read 477997 30884- 40668 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 103/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 20673:22467 - closest read 657753 ( +4301) 16372:22513 ( +46) (contained) saved region 20673:22467 - closest read 657752 ( +4290) 16383:22518 ( +51) (contained) saved region 20673:22467 - closest read 657750 ( +4287) 16386:22514 ( +47) (contained) saved region 20673:22467 - closest 5' read 657752 ( +4290) 16383:22518 ( +51) saved region 20673:22467 - closest 3' read 657753 ( +4301) 16372:22513 ( +46) search for confused edges: discard region 20673:22467 - no confusion in best edges Annotating repeats in reads for tig 104/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 105/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8070:8621 - contained in read 577520 1111- 9918 discard region 21767:22347 - contained in read 91219 12473- 24009 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 107/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 31617:33931 - closest 5' read 485616 ( +5407) 26210:33919 ( -12) saved region 31617:33931 - closest 3' read 68357 ( -76) 31693:35071 ( +1140) search for confused edges: tig 107 read 485616 pos 26210-33919 IS confused by 5' edge to read 250740 - best edge read 68357 len 2196 erate 0.0476 score 2091.47 - alt edge len 2183 erate 0.0582 score 2055.95 - absdiff 35.52 percdiff 1.7129 tig 107 read 485616 pos 26210-33919 IS confused by 5' edge to read 516913 - best edge read 68357 len 2196 erate 0.0476 score 2091.47 - alt edge len 2075 erate 0.0496 score 1972.08 - absdiff 119.39 percdiff 5.8762 saved region 31617:33931 - 2 best edges are potentially confused break tig 107 into up to 3 pieces: 0 31117 unique (length 31117) 31117 34431 repeat (length 3314) 34431 35071 unique (length 640) Creating Unitig 113124 Creating Unitig 113125 Creating Unitig 113126 For tig 107 unique region 0 31117 - 0/ 40 reads repeat/unique - unitig 113124 created. For tig 107 repeat region 31117 34431 - 9/ 0 reads repeat/unique - unitig 113125 created. For tig 107 unique region 34431 35071 - 0/ 2 reads repeat/unique - unitig 113126 created. Annotating repeats in reads for tig 108/113047. Annotated with 131 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11677:15273 - closest 5' read 494035 ( +9312) 2365:14693 ( -580) saved region 11677:15273 - closest 3' read 285990 ( -643) 12320:18210 ( +2937) saved region 26366:30837 - closest read 125116 ( +287) 26079:33047 ( +2210) (contained) saved region 26366:30837 - closest 5' read 125116 ( +287) 26079:33047 ( +2210) saved region 26366:30837 - closest 3' read 125116 ( +287) 26079:33047 ( +2210) search for confused edges: discard region 11677:15273 - no confusion in best edges discard region 26366:30837 - no confusion in best edges Annotating repeats in reads for tig 110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 111/113047. Annotated with 170 overlaps. Scan reads to discard spanned repeats. discard region 23187:24122 - contained in read 510691 14670- 24122 thickest edges to the repeat regions: saved region 13164:22260 - closest 5' read 313445 ( +1840) 11324:19858 ( -2402) saved region 13164:22260 - closest 3' read 510692 ( -1498) 14662:24076 ( +1816) search for confused edges: tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 70585 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 713 erate 0.0603 score 670.01 - absdiff 6370.11 percdiff 165.2402 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 220381 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 1657 erate 0.0115 score 1637.94 - absdiff 5402.18 percdiff 124.5019 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 649650 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 825 erate 0.0446 score 788.21 - absdiff 6251.92 percdiff 159.7255 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 715912 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 2594 erate 0.0209 score 2539.79 - absdiff 4500.34 percdiff 93.9536 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 715913 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 2530 erate 0.0159 score 2489.77 - absdiff 4550.35 percdiff 95.4963 tig 111 read 510691 pos 14670-24122 IS confused by 3' edge to read 122130 - best edge read 452941 len 7253 erate 0.0491 score 6896.88 - alt edge len 7070 erate 0.0352 score 6821.14 - absdiff 75.74 percdiff 1.1043 saved region 13164:22260 - 1 best edges are potentially confused break tig 111 into up to 3 pieces: 0 12664 unique (length 12664) 12664 22760 repeat (length 10096) 22760 24122 unique (length 1362) Creating Unitig 113127 Creating Unitig 113128 Creating Unitig 113129 For tig 111 unique region 0 12664 - 0/ 12 reads repeat/unique - unitig 113127 created. For tig 111 repeat region 12664 22760 - 41/ 0 reads repeat/unique - unitig 113128 created. For tig 111 unique region 22760 24122 - 0/ 3 reads repeat/unique - unitig 113129 created. Annotating repeats in reads for tig 113/113047. Annotated with 392 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4715:12344 - closest read 262068 ( +0) 4715:13495 ( +1151) (contained) saved region 4715:12344 - closest 5' read 262068 ( +0) 4715:13495 ( +1151) saved region 4715:12344 - closest 3' read 262068 ( +0) 4715:13495 ( +1151) search for confused edges: tig 113 read 27469 pos 586-11238 IS confused by 3' edge to read 262070 - best edge read 262068 len 5059 erate 0.0580 score 4765.58 - alt edge len 3955 erate 0.0687 score 3683.29 - absdiff 1082.29 percdiff 25.6197 tig 113 read 27469 pos 586-11238 NOT confused by 3' edge to read 635073 - best edge read 262068 len 5059 erate 0.0580 score 4765.58 - alt edge len 1507 erate 0.0595 score 1417.33 - absdiff 3348.24 percdiff 108.3064 saved region 4715:12344 - 1 best edges are potentially confused break tig 113 into up to 3 pieces: 0 4215 unique (length 4215) 4215 12844 repeat (length 8629) 12844 13778 unique (length 934) Creating Unitig 113130 Creating Unitig 113131 Creating Unitig 113132 For tig 113 unique region 0 4215 - 0/ 18 reads repeat/unique - unitig 113130 created. For tig 113 repeat region 4215 12844 - 30/ 0 reads repeat/unique - unitig 113132 created. For tig 113 unique region 12844 13778 - 0/ 2 reads repeat/unique - unitig 113131 created. Annotating repeats in reads for tig 115/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 2461:7184 - contained in read 372719 0- 10494 discard region 9369:11522 - contained in read 469093 4823- 11522 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 116/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 9350:10720 - contained in read 47650 5345- 14164 discard region 17547:20427 - contained in read 376679 12545- 22187 thickest edges to the repeat regions: saved region 0:7627 - closest 5' read 379026 ( +0) 0:6504 ( -1123) saved region 0:7627 - closest 3' read 47650 ( -5345) 5345:14164 ( +6537) saved region 12525:14164 - closest read 47650 ( +7180) 5345:14164 ( +0) (contained) saved region 12525:14164 - closest read 47652 ( +7159) 5366:14164 ( +0) (contained) saved region 12525:14164 - closest 5' read 47650 ( +7180) 5345:14164 ( +0) saved region 12525:14164 - closest 3' read 47650 ( +7180) 5345:14164 ( +0) search for confused edges: tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 110646 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1062 erate 0.0538 score 1004.86 - absdiff 89.93 percdiff 8.5659 tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 525367 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1072 erate 0.0589 score 1008.86 - absdiff 85.93 percdiff 8.1698 tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 525368 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1083 erate 0.0612 score 1016.72 - absdiff 78.07 percdiff 7.3948 tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 525369 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1075 erate 0.0682 score 1001.68 - absdiff 93.11 percdiff 8.8822 tig 116 read 47651 pos 5350-14151 IS confused by 3' edge to read 118202 - best edge read 376679 len 1600 erate 0.0625 score 1500.00 - alt edge len 1213 erate 0.0652 score 1133.91 - absdiff 366.09 percdiff 27.7980 tig 116 read 47651 pos 5350-14151 IS confused by 3' edge to read 151071 - best edge read 376679 len 1600 erate 0.0625 score 1500.00 - alt edge len 1597 erate 0.0429 score 1528.49 - absdiff 28.49 percdiff 1.8814 tig 116 read 47651 pos 5350-14151 IS confused by 3' edge to read 655161 - best edge read 376679 len 1600 erate 0.0625 score 1500.00 - alt edge len 527 erate 0.0437 score 503.97 - absdiff 996.03 percdiff 99.4057 saved region 0:7627 - 4 best edges are potentially confused saved region 12525:14164 - 3 best edges are potentially confused break tig 116 into up to 4 pieces: 0 8127 repeat (length 8127) 8127 12025 unique (length 3898) 12025 14664 repeat (length 2639) 14664 40675 unique (length 26011) Creating Unitig 113133 Creating Unitig 113134 Creating Unitig 113135 Creating Unitig 113136 For tig 116 repeat region 0 8127 - 2/ 0 reads repeat/unique - unitig 113133 created. For tig 116 unique region 8127 12025 - 0/ 11 reads repeat/unique - unitig 113134 created. For tig 116 repeat region 12025 14664 - 2/ 0 reads repeat/unique - unitig 113136 created. For tig 116 unique region 14664 40675 - 0/ 32 reads repeat/unique - unitig 113135 created. Annotating repeats in reads for tig 118/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 1542:2746 - contained in read 278511 0- 8190 discard region 5282:4367 - contained in read 278511 0- 8190 discard region 5597:4788 - contained in read 278511 0- 8190 discard region 17272:21333 - contained in read 579616 14265- 21863 discard region 22849:26977 - contained in read 411862 20592- 26977 thickest edges to the repeat regions: saved region 5976:13350 - closest 5' read 127308 ( +1517) 4459:13070 ( -280) saved region 5976:13350 - closest 3' read 714305 ( -4096) 10072:16707 ( +3357) search for confused edges: tig 118 read 694516 pos 7370-12156 IS confused by 3' edge to read 411862 - best edge read 582967 len 4657 erate 0.0350 score 4494.01 - alt edge len 3111 erate 0.0263 score 3029.18 - absdiff 1464.82 percdiff 38.9416 tig 118 read 89944 pos 8554-12170 IS confused by 5' edge to read 411862 - best edge read 694516 len 2738 erate 0.0482 score 2606.03 - alt edge len 1129 erate 0.0421 score 1081.47 - absdiff 1524.56 percdiff 82.6880 saved region 5976:13350 - 2 best edges are potentially confused break tig 118 into up to 3 pieces: 0 5476 unique (length 5476) 5476 13850 repeat (length 8374) 13850 26977 unique (length 13127) Creating Unitig 113137 Creating Unitig 113138 Creating Unitig 113139 For tig 118 unique region 0 5476 - 0/ 7 reads repeat/unique - unitig 113137 created. For tig 118 repeat region 5476 13850 - 22/ 0 reads repeat/unique - unitig 113138 created. For tig 118 unique region 13850 26977 - 0/ 28 reads repeat/unique - unitig 113139 created. Annotating repeats in reads for tig 120/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4543:6016 - closest read 430862 ( +4541) 2:6098 ( +82) (contained) saved region 4543:6016 - closest read 430863 ( +4291) 252:6127 ( +111) (contained) saved region 4543:6016 - closest 5' read 430863 ( +4291) 252:6127 ( +111) saved region 4543:6016 - closest 3' read 430862 ( +4541) 2:6098 ( +82) search for confused edges: discard region 4543:6016 - no confusion in best edges Annotating repeats in reads for tig 123/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:17160 - closest 5' read 529498 ( +0) 0:7189 ( -9971) saved region 0:17160 - closest 3' read 361212 ( -8069) 8069:17160 ( +0) search for confused edges: tig 123 read 529499 pos 890-7250 IS confused by 3' edge to read 361212 - best edge read 529498 len 6248 erate 0.0231 score 6103.67 - alt edge len 5064 erate 0.0683 score 4718.13 - absdiff 1385.54 percdiff 25.6065 tig 123 read 484781 pos 3970-15574 NOT confused by 5' edge to read 149614 - best edge read 185522 len 5306 erate 0.0162 score 5220.04 - alt edge len 649 erate 0.0576 score 611.62 - absdiff 4608.43 percdiff 158.0485 tig 123 read 498346 pos 5367-14324 NOT confused by 5' edge to read 149614 - best edge read 361212 len 8042 erate 0.0421 score 7703.43 - alt edge len 3311 erate 0.0657 score 3093.47 - absdiff 4609.96 percdiff 85.3942 tig 123 read 185522 pos 5407-14271 NOT confused by 5' edge to read 415964 - best edge read 484781 len 5316 erate 0.0162 score 5229.88 - alt edge len 692 erate 0.0234 score 675.81 - absdiff 4554.07 percdiff 154.2267 saved region 0:17160 - 1 best edges are potentially confused Annotating repeats in reads for tig 126/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2144 - contained in read 663797 0- 4120 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 127/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 6007:6647 - contained in read 583924 0- 9916 thickest edges to the repeat regions: saved region 20934:28448 - closest 5' read 594824 ( +9190) 11744:23835 ( -4613) saved region 20934:28448 - closest 3' read 649999 ( -1318) 22252:28448 ( +0) search for confused edges: discard region 20934:28448 - no confusion in best edges Annotating repeats in reads for tig 129/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2228:7653 - contained in read 503785 1704- 7653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 133/113047. Annotated with 2036 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3276:22158 - closest 5' read 595206 ( +0) 3276:14596 ( -7562) saved region 3276:22158 - closest 3' read 9364 (-12516) 15792:22158 ( +0) search for confused edges: discard region 3276:22158 - no confusion in best edges Annotating repeats in reads for tig 134/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 33216:34690 - contained in read 313259 31535- 35828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 135/113047. Annotated with 105 overlaps. Scan reads to discard spanned repeats. discard region 10900:12780 - contained in read 557500 4090- 14740 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 136/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 23778:24509 - contained in read 521602 20671- 26669 thickest edges to the repeat regions: saved region 19636:22181 - closest read 661142 ( +3794) 15842:22181 ( +0) (contained) saved region 19636:22181 - closest read 81814 ( +1972) 17664:22387 ( +206) (contained) saved region 19636:22181 - closest 5' read 81814 ( +1972) 17664:22387 ( +206) saved region 19636:22181 - closest 3' read 661142 ( +3794) 15842:22181 ( +0) search for confused edges: discard region 19636:22181 - no confusion in best edges Annotating repeats in reads for tig 137/113047. Annotated with 112 overlaps. Scan reads to discard spanned repeats. discard region 7517:9874 - contained in read 717762 4491- 10515 thickest edges to the repeat regions: saved region 646:6438 - closest read 577098 ( +646) 0:6438 ( +0) (contained) saved region 646:6438 - closest 5' read 577098 ( +646) 0:6438 ( +0) saved region 646:6438 - closest 3' read 577098 ( +646) 0:6438 ( +0) saved region 19307:22812 - closest 5' read 530402 ( +0) 19307:22255 ( -557) saved region 19307:22812 - closest 3' read 385929 ( -34) 19341:26906 ( +4094) saved region 25343:33201 - closest read 174415 ( +91) 25252:33201 ( +0) (contained) saved region 25343:33201 - closest read 250072 ( +13) 25330:36795 ( +3594) (contained) saved region 25343:33201 - closest read 617847 ( +10) 25333:33818 ( +617) (contained) saved region 25343:33201 - closest 5' read 250072 ( +13) 25330:36795 ( +3594) saved region 25343:33201 - closest 3' read 174415 ( +91) 25252:33201 ( +0) search for confused edges: tig 137 read 717762 pos 4491-10515 IS confused by 3' edge to read 473572 - best edge read 577098 len 1909 erate 0.0524 score 1808.97 - alt edge len 893 erate 0.0504 score 847.99 - absdiff 960.98 percdiff 72.3364 tig 137 read 717762 pos 4491-10515 IS confused by 3' edge to read 663433 - best edge read 577098 len 1909 erate 0.0524 score 1808.97 - alt edge len 1790 erate 0.0734 score 1658.61 - absdiff 150.35 percdiff 8.6720 saved region 646:6438 - 2 best edges are potentially confused discard region 19307:22812 - no confusion in best edges discard region 25343:33201 - no confusion in best edges break tig 137 into up to 3 pieces: 0 146 unique (length 146) 146 6938 repeat (length 6792) 6938 36795 unique (length 29857) Creating Unitig 113140 Creating Unitig 113141 Creating Unitig 113142 For tig 137 unique region 0 146 - 0/ 3 reads repeat/unique - unitig 113140 created. For tig 137 repeat region 146 6938 - 1/ 0 reads repeat/unique - unitig 113142 created. For tig 137 unique region 6938 36795 - 0/ 110 reads repeat/unique - unitig 113141 created. Annotating repeats in reads for tig 138/113047. Annotated with 1991 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17938:29463 - closest 5' read 582838 ( +0) 17938:25367 ( -4096) saved region 17938:29463 - closest 3' read 250064 ( -105) 18043:29463 ( +0) search for confused edges: tig 138 read 546407 pos 14075-23948 NOT confused by 3' edge to read 40518 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 1126 erate 0.0365 score 1084.90 - absdiff 2539.48 percdiff 107.8499 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 52536 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2407 erate 0.0655 score 2249.34 - absdiff 1375.04 percdiff 46.8199 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 52537 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2394 erate 0.0651 score 2238.15 - absdiff 1386.23 percdiff 47.2911 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 94597 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2443 erate 0.0614 score 2293.00 - absdiff 1331.38 percdiff 44.9989 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 166756 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3126 erate 0.0639 score 2926.25 - absdiff 698.13 percdiff 21.3149 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 336357 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3415 erate 0.0622 score 3202.59 - absdiff 421.79 percdiff 12.3566 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 554187 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2303 erate 0.0635 score 2156.76 - absdiff 1467.62 percdiff 50.7726 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 599347 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3763 erate 0.0671 score 3510.50 - absdiff 113.87 percdiff 3.1921 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 599349 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3762 erate 0.0660 score 3513.71 - absdiff 110.67 percdiff 3.1008 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 608472 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3307 erate 0.0423 score 3167.11 - absdiff 457.26 percdiff 13.4658 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 608476 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3303 erate 0.0423 score 3163.28 - absdiff 461.09 percdiff 13.5863 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 609433 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2481 erate 0.0601 score 2331.89 - absdiff 1292.49 percdiff 43.3992 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 611814 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3368 erate 0.0543 score 3185.12 - absdiff 439.26 percdiff 12.9014 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 628083 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3104 erate 0.0483 score 2954.08 - absdiff 670.30 percdiff 20.3787 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 628084 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3094 erate 0.0446 score 2956.01 - absdiff 668.37 percdiff 20.3140 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 643871 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3793 erate 0.0658 score 3543.42 - absdiff 80.96 percdiff 2.2589 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 52536 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2272 erate 0.0645 score 2125.46 - absdiff 4679.68 percdiff 104.8011 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 52537 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2259 erate 0.0605 score 2122.33 - absdiff 4682.81 percdiff 104.9078 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 89831 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2038 erate 0.0665 score 1902.47 - absdiff 4902.66 percdiff 112.6064 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 94597 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2308 erate 0.0566 score 2177.37 - absdiff 4627.77 percdiff 103.0396 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 166756 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2981 erate 0.0615 score 2797.67 - absdiff 4007.47 percdiff 83.4645 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 166758 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2979 erate 0.0703 score 2769.58 - absdiff 4035.56 percdiff 84.2962 tig 138 read 201858 pos 19772-27251 IS confused by 3' edge to read 238313 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 6765 erate 0.0467 score 6449.07 - absdiff 356.06 percdiff 5.3728 tig 138 read 201858 pos 19772-27251 IS confused by 3' edge to read 336357 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 6841 erate 0.0551 score 6464.06 - absdiff 341.08 percdiff 5.1409 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 554187 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2169 erate 0.0593 score 2040.38 - absdiff 4764.76 percdiff 107.7328 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 599347 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3610 erate 0.0626 score 3384.01 - absdiff 3421.12 percdiff 67.1523 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 599349 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3609 erate 0.0592 score 3395.35 - absdiff 3409.79 percdiff 66.8554 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 608472 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3161 erate 0.0514 score 2998.52 - absdiff 3806.61 percdiff 77.6569 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 608476 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3157 erate 0.0521 score 2992.52 - absdiff 3812.62 percdiff 77.8271 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 609433 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2345 erate 0.0639 score 2195.15 - absdiff 4609.98 percdiff 102.4407 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 611814 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3221 erate 0.0617 score 3022.26 - absdiff 3782.87 percdiff 76.9862 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 628083 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2961 erate 0.0475 score 2820.35 - absdiff 3984.78 percdiff 82.7965 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 628084 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2951 erate 0.0429 score 2824.40 - absdiff 3980.73 percdiff 82.6776 tig 138 read 201858 pos 19772-27251 IS confused by 3' edge to read 643871 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 7220 erate 0.0547 score 6825.07 - absdiff 19.93 percdiff 0.2924 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 69514 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 1740 erate 0.0454 score 1661.00 - absdiff 4794.60 percdiff 118.1429 tig 138 read 637543 pos 20510-29157 IS confused by 3' edge to read 73835 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 6087 erate 0.0394 score 5847.17 - absdiff 608.43 percdiff 9.8909 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 86124 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2232 erate 0.0555 score 2108.12 - absdiff 4347.48 percdiff 101.5324 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 114215 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 3272 erate 0.0424 score 3133.27 - absdiff 3322.33 percdiff 69.2956 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 114216 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 3303 erate 0.0447 score 3155.36 - absdiff 3300.25 percdiff 68.6767 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 137335 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2672 erate 0.0738 score 2474.81 - absdiff 3980.79 percdiff 89.1515 tig 138 read 637543 pos 20510-29157 IS confused by 3' edge to read 212668 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 4967 erate 0.0459 score 4739.01 - absdiff 1716.59 percdiff 30.6681 tig 138 read 637543 pos 20510-29157 IS confused by 3' edge to read 260751 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 5299 erate 0.0694 score 4931.25 - absdiff 1524.35 percdiff 26.7739 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 293555 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2559 erate 0.0582 score 2410.07 - absdiff 4045.54 percdiff 91.2630 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 478039 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 1764 erate 0.0586 score 1660.63 - absdiff 4794.97 percdiff 118.1576 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 532060 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2709 erate 0.0705 score 2518.02 - absdiff 3937.59 percdiff 87.7592 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 556591 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2068 erate 0.0430 score 1979.08 - absdiff 4476.53 percdiff 106.1457 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 628000 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 1684 erate 0.0459 score 1606.70 - absdiff 4848.90 percdiff 120.2856 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 643871 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 3665 erate 0.0548 score 3464.16 - absdiff 2991.44 percdiff 60.3128 tig 138 read 637543 pos 20510-29157 IS confused by 5' edge to read 650501 - best edge read 177496 len 894 erate 0.0462 score 852.70 - alt edge len 508 erate 0.0673 score 473.81 - absdiff 378.89 percdiff 57.1252 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 16358 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3175 erate 0.0376 score 3055.62 - absdiff 3874.36 percdiff 77.5990 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 56472 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1670 erate 0.0734 score 1547.42 - absdiff 5382.56 percdiff 126.9861 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 69514 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2876 erate 0.0438 score 2750.03 - absdiff 4179.95 percdiff 86.3625 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 73835 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3595 erate 0.0592 score 3382.18 - absdiff 3547.81 percdiff 68.8082 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 86124 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3368 erate 0.0627 score 3156.83 - absdiff 3773.16 percdiff 74.8137 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 101499 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 933 erate 0.0606 score 876.46 - absdiff 6053.52 percdiff 155.0904 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 114215 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 4418 erate 0.0393 score 4244.37 - absdiff 2685.61 percdiff 48.0674 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 114216 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 4448 erate 0.0441 score 4251.84 - absdiff 2678.14 percdiff 47.9017 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 125239 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1156 erate 0.0747 score 1069.65 - absdiff 5860.34 percdiff 146.5152 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 137335 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3813 erate 0.0747 score 3528.17 - absdiff 3401.82 percdiff 65.0558 tig 138 read 259113 pos 20888-28980 IS confused by 5' edge to read 212668 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 6137 erate 0.0529 score 5812.35 - absdiff 1117.63 percdiff 17.5420 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 238313 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3842 erate 0.0607 score 3608.79 - absdiff 3708.53 percdiff 67.8839 tig 138 read 259113 pos 20888-28980 IS confused by 5' edge to read 260751 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 6513 erate 0.0628 score 6103.98 - absdiff 826.00 percdiff 12.6746 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 274118 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 851 erate 0.0565 score 802.92 - absdiff 6127.07 percdiff 158.4674 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 336357 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3917 erate 0.0592 score 3685.11 - absdiff 3632.21 percdiff 66.0256 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 532060 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3850 erate 0.0661 score 3595.51 - absdiff 3334.47 percdiff 63.3598 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 545260 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2331 erate 0.0496 score 2215.38 - absdiff 4714.60 percdiff 103.1036 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 545264 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2311 erate 0.0546 score 2184.82 - absdiff 4745.17 percdiff 104.1200 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 556591 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3203 erate 0.0425 score 3066.87 - absdiff 3863.11 percdiff 77.2865 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 563049 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1186 erate 0.0723 score 1100.25 - absdiff 5829.73 percdiff 145.1945 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 576860 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1304 erate 0.0567 score 1230.06 - absdiff 5699.92 percdiff 139.7031 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 576861 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1304 erate 0.0550 score 1232.28 - absdiff 5697.70 percdiff 139.6109 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 599347 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 574 erate 0.0681 score 534.91 - absdiff 6782.41 percdiff 172.7512 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 628000 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2819 erate 0.0356 score 2718.64 - absdiff 4211.34 percdiff 87.2941 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 628083 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3602 erate 0.0578 score 3393.80 - absdiff 3923.52 percdiff 73.2606 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 628084 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3592 erate 0.0552 score 3393.72 - absdiff 3923.60 percdiff 73.2628 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 643871 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 4814 erate 0.0629 score 4511.20 - absdiff 2418.79 percdiff 42.2821 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 697592 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3895 erate 0.0750 score 3602.88 - absdiff 3327.11 percdiff 63.1758 saved region 17938:29463 - 24 best edges are potentially confused break tig 138 into up to 3 pieces: 0 17438 unique (length 17438) 17438 29963 repeat (length 12525) 29963 40788 unique (length 10825) Creating Unitig 113143 Creating Unitig 113144 Creating Unitig 113145 For tig 138 unique region 0 17438 - 0/ 27 reads repeat/unique - unitig 113143 created. For tig 138 repeat region 17438 29963 - 142/ 0 reads repeat/unique - unitig 113144 created. For tig 138 unique region 29963 40788 - 0/ 8 reads repeat/unique - unitig 113145 created. Annotating repeats in reads for tig 139/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 0:5343 - contained in read 273676 0- 17266 discard region 8017:9404 - contained in read 273676 0- 17266 discard region 15498:16539 - contained in read 273676 0- 17266 discard region 27212:32591 - contained in read 88069 24035- 32591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 140/113047. Annotated with 253 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 38301:50081 - closest 5' read 444214 ( +221) 38080:48428 ( -1653) saved region 38301:50081 - closest 3' read 473695 ( -992) 39293:52784 ( +2703) search for confused edges: tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 161912 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4067 erate 0.0344 score 3927.10 - absdiff 4901.13 percdiff 76.8484 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 161913 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4125 erate 0.0483 score 3925.76 - absdiff 4902.46 percdiff 76.8773 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 182805 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 864 erate 0.0611 score 811.21 - absdiff 8017.01 percdiff 166.3379 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 182807 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 947 erate 0.0532 score 896.62 - absdiff 7931.60 percdiff 163.1204 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 218688 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 3691 erate 0.0065 score 3667.01 - absdiff 5161.21 percdiff 82.6109 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 247330 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 2173 erate 0.0171 score 2135.84 - absdiff 6692.38 percdiff 122.0785 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 440985 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4805 erate 0.0108 score 4753.11 - absdiff 4075.12 percdiff 60.0106 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 512052 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 922 erate 0.0065 score 916.01 - absdiff 7912.21 percdiff 162.3980 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 553532 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4130 erate 0.0141 score 4071.77 - absdiff 4756.45 percdiff 73.7435 tig 140 read 193387 pos 38468-44748 NOT confused by 3' edge to read 440985 - best edge read 444214 len 6200 erate 0.0267 score 6034.46 - alt edge len 791 erate 0.0330 score 764.90 - absdiff 5269.56 percdiff 155.0018 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 12477 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 5057 erate 0.0337 score 4886.58 - absdiff 3934.72 percdiff 57.4081 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 12478 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 5074 erate 0.0396 score 4873.07 - absdiff 3948.22 percdiff 57.6620 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 481276 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 1652 erate 0.0740 score 1529.75 - absdiff 7291.54 percdiff 140.8851 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 486519 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 1796 erate 0.0656 score 1678.18 - absdiff 7143.11 percdiff 136.0661 tig 140 read 473695 pos 39293-52784 IS confused by 5' edge to read 641970 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 8693 erate 0.0272 score 8456.55 - absdiff 364.74 percdiff 4.2221 saved region 38301:50081 - 1 best edges are potentially confused break tig 140 into up to 3 pieces: 0 37801 unique (length 37801) 37801 50581 repeat (length 12780) 50581 55700 unique (length 5119) Creating Unitig 113146 Creating Unitig 113147 Creating Unitig 113148 For tig 140 unique region 0 37801 - 0/ 52 reads repeat/unique - unitig 113146 created. For tig 140 repeat region 37801 50581 - 86/ 0 reads repeat/unique - unitig 113147 created. For tig 140 unique region 50581 55700 - 0/ 13 reads repeat/unique - unitig 113148 created. Annotating repeats in reads for tig 143/113047. Annotated with 148 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5078:18276 - closest 5' read 715460 ( +739) 4339:13404 ( -4872) saved region 5078:18276 - closest 3' read 561077 ( -8633) 13711:18276 ( +0) search for confused edges: tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 41419 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 3655 erate 0.0121 score 3610.77 - absdiff 4131.55 percdiff 72.7827 tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 588173 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 2361 erate 0.0158 score 2323.70 - absdiff 5418.62 percdiff 107.6617 tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 656806 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 1761 erate 0.0553 score 1663.62 - absdiff 6078.70 percdiff 129.2525 tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 656808 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 1610 erate 0.0566 score 1518.87 - absdiff 6223.45 percdiff 134.3984 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 44592 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 5332 erate 0.0288 score 5178.44 - absdiff 2572.80 percdiff 39.7968 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 113975 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 5613 erate 0.0266 score 5463.69 - absdiff 2287.54 percdiff 34.6206 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 281908 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 2830 erate 0.0238 score 2762.65 - absdiff 4988.59 percdiff 94.8953 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 468448 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 4060 erate 0.0360 score 3913.84 - absdiff 3837.40 percdiff 65.7929 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 44592 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 5313 erate 0.0257 score 5176.46 - absdiff 2979.29 percdiff 44.6931 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 113975 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 5594 erate 0.0217 score 5472.61 - absdiff 2683.14 percdiff 39.3758 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 191227 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 4242 erate 0.0249 score 4136.37 - absdiff 3017.46 percdiff 53.4527 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 279385 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 1196 erate 0.0336 score 1155.81 - absdiff 5998.02 percdiff 144.3628 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 281908 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 2811 erate 0.0200 score 2754.78 - absdiff 5400.97 percdiff 99.0047 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 468448 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 4037 erate 0.0261 score 3931.63 - absdiff 4224.11 percdiff 69.8929 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 514335 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 2650 erate 0.0197 score 2597.80 - absdiff 4556.04 percdiff 93.4416 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 562050 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 603 erate 0.0315 score 584.01 - absdiff 6569.83 percdiff 169.8104 tig 143 read 290912 pos 5479-17591 IS confused by 3' edge to read 588173 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 6511 erate 0.0214 score 6371.66 - absdiff 782.17 percdiff 11.5659 tig 143 read 561082 pos 9969-18180 NOT confused by 5' edge to read 44592 - best edge read 290912 len 7401 erate 0.0536 score 7004.31 - alt edge len 911 erate 0.0411 score 873.56 - absdiff 6130.75 percdiff 155.6449 tig 143 read 561082 pos 9969-18180 NOT confused by 5' edge to read 113975 - best edge read 290912 len 7401 erate 0.0536 score 7004.31 - alt edge len 1193 erate 0.0369 score 1148.98 - absdiff 5855.33 percdiff 143.6311 tig 143 read 561082 pos 9969-18180 NOT confused by 5' edge to read 385052 - best edge read 290912 len 7401 erate 0.0536 score 7004.31 - alt edge len 1810 erate 0.0504 score 1718.78 - absdiff 5285.53 percdiff 121.1849 saved region 5078:18276 - 1 best edges are potentially confused break tig 143 into up to 2 pieces: 0 4578 unique (length 4578) 4578 18276 repeat (length 13698) Creating Unitig 113149 Creating Unitig 113150 For tig 143 unique region 0 4578 - 0/ 9 reads repeat/unique - unitig 113149 created. For tig 143 repeat region 4578 18276 - 126/ 0 reads repeat/unique - unitig 113150 created. Annotating repeats in reads for tig 145/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 23269:26293 - contained in read 238054 20799- 30444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 148/113047. Annotated with 1472 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2620:9449 - closest 5' read 397155 ( +1944) 676:9205 ( -244) saved region 2620:9449 - closest 3' read 293760 ( -1619) 4239:13506 ( +4057) saved region 11158:16179 - closest 5' read 293759 ( +6141) 5017:13656 ( -2523) saved region 11158:16179 - closest 3' read 643832 ( -264) 11422:22606 ( +6427) saved region 20018:33496 - closest 5' read 597983 ( +4757) 15261:32858 ( -638) saved region 20018:33496 - closest 3' read 50064 ( -7918) 27936:35532 ( +2036) search for confused edges: tig 148 read 293759 pos 5017-13656 NOT confused by 5' edge to read 31648 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 1321 erate 0.0643 score 1236.06 - absdiff 2650.77 percdiff 103.4873 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 127603 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 2672 erate 0.0474 score 2545.35 - absdiff 1341.48 percdiff 41.7116 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 175693 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3917 erate 0.0553 score 3700.39 - absdiff 186.44 percdiff 4.9145 tig 148 read 293759 pos 5017-13656 NOT confused by 5' edge to read 198071 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 1199 erate 0.0677 score 1117.83 - absdiff 2769.00 percdiff 110.6570 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 280576 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3427 erate 0.0371 score 3299.86 - absdiff 586.97 percdiff 16.3349 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 311374 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 4032 erate 0.0459 score 3846.93 - absdiff 39.90 percdiff 1.0317 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 335604 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 2048 erate 0.0606 score 1923.89 - absdiff 1962.94 percdiff 67.5626 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 338205 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3936 erate 0.0471 score 3750.61 - absdiff 136.21 percdiff 3.5670 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 340261 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3982 erate 0.0349 score 3843.03 - absdiff 43.80 percdiff 1.1332 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 340263 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3950 erate 0.0261 score 3846.90 - absdiff 39.92 percdiff 1.0324 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 448733 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3957 erate 0.0386 score 3804.26 - absdiff 82.57 percdiff 2.1471 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 498322 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3957 erate 0.0276 score 3847.79 - absdiff 39.04 percdiff 1.0095 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 498472 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3950 erate 0.0355 score 3809.78 - absdiff 77.05 percdiff 2.0022 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 537046 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3958 erate 0.0362 score 3814.72 - absdiff 72.11 percdiff 1.8725 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 611765 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 4105 erate 0.0487 score 3905.09 - absdiff 18.26 percdiff 0.4687 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 688040 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3381 erate 0.0382 score 3251.85 - absdiff 634.98 percdiff 17.7899 tig 148 read 293759 pos 5017-13656 NOT confused by 5' edge to read 689184 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 1320 erate 0.0518 score 1251.62 - absdiff 2635.20 percdiff 102.5680 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 701935 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3959 erate 0.0500 score 3761.05 - absdiff 125.78 percdiff 3.2892 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 122443 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 638 erate 0.0533 score 603.99 - absdiff 1582.88 percdiff 113.4328 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 122445 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 639 erate 0.0610 score 600.02 - absdiff 1586.86 percdiff 113.8797 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 642088 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 1986 erate 0.0373 score 1911.92 - absdiff 274.95 percdiff 13.4164 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 642089 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 1997 erate 0.0421 score 1912.93 - absdiff 273.95 percdiff 13.3641 tig 148 read 695103 pos 30176-38609 IS confused by 5' edge to read 300331 - best edge read 597983 len 1991 erate 0.0409 score 1909.57 - alt edge len 628 erate 0.0341 score 606.59 - absdiff 1302.98 percdiff 103.5694 tig 148 read 695103 pos 30176-38609 IS confused by 5' edge to read 516621 - best edge read 597983 len 1991 erate 0.0409 score 1909.57 - alt edge len 1249 erate 0.0357 score 1204.41 - absdiff 705.16 percdiff 45.2898 saved region 2620:9449 - 15 best edges are potentially confused saved region 11158:16179 - 4 best edges are potentially confused saved region 20018:33496 - 2 best edges are potentially confused break tig 148 into up to 7 pieces: 0 2120 unique (length 2120) 2120 9949 repeat (length 7829) 9949 10658 unique (length 709) 10658 16679 repeat (length 6021) 16679 19518 unique (length 2839) 19518 33996 repeat (length 14478) 33996 50873 unique (length 16877) Creating Unitig 113151 Creating Unitig 113152 Creating Unitig 113153 Creating Unitig 113154 Creating Unitig 113155 Creating Unitig 113156 Creating Unitig 113157 For tig 148 unique region 0 2120 - 0/ 2 reads repeat/unique - unitig 113151 created. For tig 148 repeat region 2120 9949 - 21/ 0 reads repeat/unique - unitig 113152 created. For tig 148 unique region 9949 10658 - 0/ 2 reads repeat/unique - unitig 113153 created. For tig 148 repeat region 10658 16679 - 20/ 0 reads repeat/unique - unitig 113154 created. For tig 148 unique region 16679 19518 - 0/ 17 reads repeat/unique - unitig 113155 created. For tig 148 repeat region 19518 33996 - 21/ 0 reads repeat/unique - unitig 113156 created. For tig 148 unique region 33996 50873 - 0/ 37 reads repeat/unique - unitig 113157 created. Annotating repeats in reads for tig 150/113047. Annotated with 192 overlaps. Scan reads to discard spanned repeats. discard region 0:10768 - contained in read 658346 0- 13166 discard region 23215:29200 - contained in read 343982 17953- 29200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 151/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1890:3403 - contained in read 179929 0- 5713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 152/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8108:15553 - closest 5' read 224221 ( +0) 8108:14936 ( -617) saved region 8108:15553 - closest 3' read 192518 ( -1387) 9495:15839 ( +286) search for confused edges: discard region 8108:15553 - no confusion in best edges Annotating repeats in reads for tig 153/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1715 - contained in read 244437 0- 6424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 157/113047. Annotated with 490 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2800:21308 - closest 5' read 716844 ( +2620) 180:8759 (-12549) saved region 2800:21308 - closest 3' read 422794 (-12545) 15345:21308 ( +0) search for confused edges: tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 40822 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 1080 erate 0.0621 score 1012.93 - absdiff 1942.99 percdiff 97.9118 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 130671 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 3011 erate 0.0526 score 2852.62 - absdiff 103.30 percdiff 3.5567 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 140414 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 2082 erate 0.0418 score 1994.97 - absdiff 960.95 percdiff 38.8191 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 140415 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 2081 erate 0.0414 score 1994.85 - absdiff 961.07 percdiff 38.8252 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 350785 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 3056 erate 0.0461 score 2915.12 - absdiff 40.80 percdiff 1.3899 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 481664 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 1456 erate 0.0657 score 1360.34 - absdiff 1595.58 percdiff 73.9333 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 595206 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 1023 erate 0.0711 score 950.26 - absdiff 2005.65 percdiff 102.6912 tig 157 read 566357 pos 5383-11904 NOT confused by 3' edge to read 516254 - best edge read 52738 len 4796 erate 0.0579 score 4518.31 - alt edge len 2571 erate 0.0705 score 2389.74 - absdiff 2128.57 percdiff 61.6256 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 27915 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 2552 erate 0.0613 score 2395.56 - absdiff 562.26 percdiff 21.0058 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 40822 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1672 erate 0.0637 score 1565.49 - absdiff 1392.33 percdiff 61.5623 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 190042 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1926 erate 0.0556 score 1818.91 - absdiff 1138.91 percdiff 47.6856 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 230529 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1889 erate 0.0613 score 1773.20 - absdiff 1184.62 percdiff 50.0787 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 350785 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 2056 erate 0.0594 score 1933.87 - absdiff 1023.95 percdiff 41.8648 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 422794 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 2739 erate 0.0662 score 2557.68 - absdiff 400.14 percdiff 14.5098 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 590994 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1844 erate 0.0692 score 1716.40 - absdiff 1241.43 percdiff 53.1181 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 590995 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1845 erate 0.0602 score 1733.93 - absdiff 1223.89 percdiff 52.1720 tig 157 read 291362 pos 9691-19243 IS confused by 5' edge to read 355429 - best edge read 627999 len 1820 erate 0.0621 score 1706.98 - alt edge len 912 erate 0.0520 score 864.58 - absdiff 842.40 percdiff 65.5170 tig 157 read 291362 pos 9691-19243 IS confused by 3' edge to read 443664 - best edge read 422794 len 2938 erate 0.0477 score 2797.86 - alt edge len 1041 erate 0.0712 score 966.88 - absdiff 1830.98 percdiff 97.2698 tig 157 read 291362 pos 9691-19243 IS confused by 3' edge to read 446342 - best edge read 422794 len 2938 erate 0.0477 score 2797.86 - alt edge len 2788 erate 0.0592 score 2622.95 - absdiff 174.91 percdiff 6.4532 tig 157 read 627999 pos 11004-16663 NOT confused by 3' edge to read 355429 - best edge read 323186 len 5538 erate 0.0312 score 5365.21 - alt edge len 682 erate 0.0634 score 638.76 - absdiff 4726.45 percdiff 157.4441 tig 157 read 627999 pos 11004-16663 NOT confused by 3' edge to read 355432 - best edge read 323186 len 5538 erate 0.0312 score 5365.21 - alt edge len 699 erate 0.0695 score 650.42 - absdiff 4714.79 percdiff 156.7514 tig 157 read 323186 pos 12131-17806 NOT confused by 5' edge to read 355429 - best edge read 312599 len 5597 erate 0.0267 score 5447.56 - alt edge len 749 erate 0.0604 score 703.76 - absdiff 4743.80 percdiff 154.2368 tig 157 read 323186 pos 12131-17806 NOT confused by 5' edge to read 355432 - best edge read 312599 len 5597 erate 0.0267 score 5447.56 - alt edge len 766 erate 0.0621 score 718.43 - absdiff 4729.13 percdiff 153.3939 saved region 2800:21308 - 18 best edges are potentially confused break tig 157 into up to 2 pieces: 0 2300 unique (length 2300) 2300 21308 repeat (length 19008) Creating Unitig 113158 Creating Unitig 113159 For tig 157 unique region 0 2300 - 0/ 3 reads repeat/unique - unitig 113158 created. For tig 157 repeat region 2300 21308 - 94/ 0 reads repeat/unique - unitig 113159 created. Annotating repeats in reads for tig 158/113047. Annotated with 80 overlaps. Scan reads to discard spanned repeats. discard region 6382:2790 - contained in read 316188 0- 4915 discard region 10076:10902 - contained in read 546588 1303- 13386 discard region 15073:18567 - contained in read 180641 13529- 20480 discard region 20584:22975 - contained in read 195078 17235- 38262 discard region 38161:39625 - contained in read 680506 35469- 42334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 159/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 421:1537 - contained in read 711442 0- 2702 discard region 8888:12973 - contained in read 114486 6799- 12973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 160/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2634:1659 - contained in read 353884 0- 6398 discard region 3479:5045 - contained in read 353884 0- 6398 discard region 7248:9010 - contained in read 177653 3428- 10046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 163/113047. Annotated with 92 overlaps. Scan reads to discard spanned repeats. discard region 24620:25630 - contained in read 135856 22779- 28786 thickest edges to the repeat regions: saved region 11917:20948 - closest 5' read 548232 ( +445) 11472:19543 ( -1405) saved region 11917:20948 - closest 3' read 300249 ( -5241) 17158:24026 ( +3078) saved region 22779:24182 - closest read 135856 ( +0) 22779:28786 ( +4604) (contained) saved region 22779:24182 - closest 5' read 135856 ( +0) 22779:28786 ( +4604) saved region 22779:24182 - closest 3' read 135856 ( +0) 22779:28786 ( +4604) search for confused edges: tig 163 read 548227 pos 11476-19543 IS confused by 5' edge to read 31806 - best edge read 300250 len 2341 erate 0.0205 score 2293.01 - alt edge len 1909 erate 0.0215 score 1867.96 - absdiff 425.05 percdiff 20.4305 tig 163 read 548227 pos 11476-19543 IS confused by 5' edge to read 31808 - best edge read 300250 len 2341 erate 0.0205 score 2293.01 - alt edge len 2306 erate 0.0160 score 2269.10 - absdiff 23.91 percdiff 1.0480 tig 163 read 548227 pos 11476-19543 IS confused by 5' edge to read 31809 - best edge read 300250 len 2341 erate 0.0205 score 2293.01 - alt edge len 2307 erate 0.0160 score 2270.09 - absdiff 22.92 percdiff 1.0046 saved region 11917:20948 - 3 best edges are potentially confused discard region 22779:24182 - no confusion in best edges break tig 163 into up to 3 pieces: 0 11417 unique (length 11417) 11417 21448 repeat (length 10031) 21448 43881 unique (length 22433) Creating Unitig 113160 Creating Unitig 113161 Creating Unitig 113162 For tig 163 unique region 0 11417 - 0/ 19 reads repeat/unique - unitig 113160 created. For tig 163 repeat region 11417 21448 - 47/ 0 reads repeat/unique - unitig 113161 created. For tig 163 unique region 21448 43881 - 0/ 40 reads repeat/unique - unitig 113162 created. Annotating repeats in reads for tig 168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 173/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 0:616 - contained in read 221588 0- 6414 discard region 1171:3701 - contained in read 221588 0- 6414 thickest edges to the repeat regions: saved region 10601:11508 - closest read 116074 ( +8448) 2153:11508 ( +0) (contained) saved region 10601:11508 - closest 5' read 116074 ( +8448) 2153:11508 ( +0) saved region 10601:11508 - closest 3' read 116074 ( +8448) 2153:11508 ( +0) search for confused edges: tig 173 read 510940 pos 10823-20972 IS confused by 3' edge to read 607540 - best edge read 116074 len 659 erate 0.0626 score 617.75 - alt edge len 502 erate 0.0340 score 484.93 - absdiff 132.81 percdiff 24.0894 saved region 10601:11508 - 1 best edges are potentially confused break tig 173 into up to 3 pieces: 0 10101 unique (length 10101) 10101 12008 repeat (length 1907) 12008 27590 unique (length 15582) Creating Unitig 113163 Creating Unitig 113164 For tig 173 unique region 0 10101 - 0/ 15 reads repeat/unique - unitig 113163 created. For tig 173 repeat region 10101 12008 - 0/ 0 repeat/unique reads - no new unitig created. For tig 173 unique region 12008 27590 - 0/ 18 reads repeat/unique - unitig 113164 created. Annotating repeats in reads for tig 177/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 43282:44145 - contained in read 638939 37062- 44839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 179/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 642:5746 - contained in read 111247 0- 7098 discard region 6686:13552 - contained in read 367754 4449- 13552 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 196/113047. Annotated with 164 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1269:7662 - closest 5' read 525367 ( +0) 1269:7655 ( -7) saved region 1269:7662 - closest 3' read 525368 ( -5) 1274:7662 ( +0) search for confused edges: tig 196 read 641400 pos 95-7007 NOT confused by 3' edge to read 27206 - best edge read 525367 len 5664 erate 0.0625 score 5310.00 - alt edge len 1268 erate 0.0710 score 1177.97 - absdiff 4132.03 percdiff 127.3750 tig 196 read 641400 pos 95-7007 NOT confused by 3' edge to read 262068 - best edge read 525367 len 5664 erate 0.0625 score 5310.00 - alt edge len 2399 erate 0.0521 score 2274.01 - absdiff 3035.99 percdiff 80.0628 tig 196 read 641400 pos 95-7007 NOT confused by 3' edge to read 262070 - best edge read 525367 len 5664 erate 0.0625 score 5310.00 - alt edge len 2597 erate 0.0626 score 2434.43 - absdiff 2875.57 percdiff 74.2617 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 27206 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 1905 erate 0.0578 score 1794.89 - absdiff 4396.01 percdiff 110.0958 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 262068 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 3033 erate 0.0458 score 2894.09 - absdiff 3296.81 percdiff 72.5771 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 262070 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 3230 erate 0.0511 score 3064.95 - absdiff 3125.95 percdiff 67.5455 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 316552 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 851 erate 0.0588 score 800.96 - absdiff 5389.94 percdiff 154.1775 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 379026 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 1072 erate 0.0589 score 1008.86 - absdiff 5182.04 percdiff 143.9504 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 27206 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 1902 erate 0.0663 score 1775.90 - absdiff 4437.82 percdiff 111.0897 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 35386 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1299 erate 0.0628 score 1217.42 - absdiff 4973.48 percdiff 134.2673 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 35387 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1297 erate 0.0595 score 1219.83 - absdiff 4971.07 percdiff 134.1588 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 231909 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1049 erate 0.0631 score 982.81 - absdiff 5208.09 percdiff 145.1994 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 231910 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1062 erate 0.0708 score 986.81 - absdiff 5204.09 percdiff 145.0069 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 247879 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 2918 erate 0.0567 score 2752.55 - absdiff 3438.35 percdiff 76.8909 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 262068 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 3034 erate 0.0508 score 2879.87 - absdiff 3333.85 percdiff 73.3230 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 262070 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 3233 erate 0.0591 score 3041.93 - absdiff 3171.79 percdiff 68.5374 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 316552 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 848 erate 0.0696 score 788.98 - absdiff 5424.74 percdiff 154.9329 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 379026 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 1070 erate 0.0682 score 997.03 - absdiff 5216.69 percdiff 144.6922 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 489155 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1281 erate 0.0587 score 1205.81 - absdiff 4985.09 percdiff 134.7923 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 519267 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1006 erate 0.0419 score 963.85 - absdiff 5227.05 percdiff 146.1142 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 600399 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1182 erate 0.0721 score 1096.78 - absdiff 5094.12 percdiff 139.8010 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 677214 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 2034 erate 0.0527 score 1926.81 - absdiff 4264.09 percdiff 105.0565 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 35386 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1294 erate 0.0639 score 1211.31 - absdiff 4996.54 percdiff 134.6928 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 35387 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1292 erate 0.0596 score 1215.00 - absdiff 4992.86 percdiff 134.5267 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 231909 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1043 erate 0.0663 score 973.85 - absdiff 5234.01 percdiff 145.7595 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 231910 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1057 erate 0.0729 score 979.94 - absdiff 5227.91 percdiff 145.4662 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 247879 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 2909 erate 0.0688 score 2708.86 - absdiff 3499.00 percdiff 78.4817 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 362081 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1082 erate 0.0701 score 1006.15 - absdiff 5201.71 percdiff 144.2112 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 489155 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1276 erate 0.0612 score 1197.91 - absdiff 5009.95 percdiff 135.2986 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 519267 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1000 erate 0.0460 score 954.00 - absdiff 5253.86 percdiff 146.7177 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 600399 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1179 erate 0.0738 score 1091.99 - absdiff 5115.87 percdiff 140.1637 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 677214 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 2030 erate 0.0598 score 1908.61 - absdiff 4299.25 percdiff 105.9390 discard region 1269:7662 - no confusion in best edges Annotating repeats in reads for tig 197/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 8437:14631 - contained in read 657576 852- 14631 thickest edges to the repeat regions: saved region 735:5756 - closest read 309149 ( +0) 735:5756 ( +0) (contained) saved region 735:5756 - closest 5' read 309149 ( +0) 735:5756 ( +0) saved region 735:5756 - closest 3' read 309149 ( +0) 735:5756 ( +0) search for confused edges: tig 197 read 657577 pos 842-14565 NOT confused by 3' edge to read 689426 - best edge read 223277 len 3308 erate 0.0526 score 3134.00 - alt edge len 981 erate 0.0449 score 936.95 - absdiff 2197.05 percdiff 107.9377 discard region 735:5756 - no confusion in best edges Annotating repeats in reads for tig 201/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8651:9535 - contained in read 32638 1416- 11239 thickest edges to the repeat regions: saved region 26589:27796 - closest read 510482 ( +0) 26589:31317 ( +3521) (contained) saved region 26589:27796 - closest 5' read 510482 ( +0) 26589:31317 ( +3521) saved region 26589:27796 - closest 3' read 510482 ( +0) 26589:31317 ( +3521) search for confused edges: discard region 26589:27796 - no confusion in best edges Annotating repeats in reads for tig 202/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9428:10234 - contained in read 294904 2092- 11318 discard region 21315:22052 - contained in read 33332 14999- 25428 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 205/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 3095:7673 - contained in read 43120 0- 8993 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 206/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 13837:14390 - contained in read 706800 13063- 17746 thickest edges to the repeat regions: saved region 2373:11073 - closest 5' read 713084 ( +274) 2099:9317 ( -1756) saved region 2373:11073 - closest 3' read 121563 ( -4920) 7293:11073 ( +0) search for confused edges: tig 206 read 720864 pos 0-8262 NOT confused by 3' edge to read 466277 - best edge read 140335 len 5517 erate 0.0508 score 5236.74 - alt edge len 1882 erate 0.0680 score 1754.02 - absdiff 3482.71 percdiff 99.6376 tig 206 read 140335 pos 2556-9874 NOT confused by 3' edge to read 133048 - best edge read 140334 len 7140 erate 0.0173 score 7016.48 - alt edge len 849 erate 0.0649 score 793.90 - absdiff 6222.58 percdiff 159.3413 tig 206 read 140335 pos 2556-9874 NOT confused by 3' edge to read 434852 - best edge read 140334 len 7140 erate 0.0173 score 7016.48 - alt edge len 697 erate 0.0549 score 658.73 - absdiff 6357.74 percdiff 165.6695 tig 206 read 140335 pos 2556-9874 NOT confused by 3' edge to read 482947 - best edge read 140334 len 7140 erate 0.0173 score 7016.48 - alt edge len 618 erate 0.0391 score 593.84 - absdiff 6422.64 percdiff 168.7878 tig 206 read 140335 pos 2556-9874 NOT confused by 5' edge to read 698627 - best edge read 720864 len 5688 erate 0.0508 score 5399.05 - alt edge len 1172 erate 0.0519 score 1111.17 - absdiff 4287.88 percdiff 131.7275 tig 206 read 140334 pos 2657-9886 NOT confused by 5' edge to read 434852 - best edge read 302402 len 6601 erate 0.0138 score 6509.91 - alt edge len 716 erate 0.0592 score 673.61 - absdiff 5836.29 percdiff 162.4912 tig 206 read 302402 pos 3198-10959 IS confused by 3' edge to read 133048 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1925 erate 0.0370 score 1853.77 - absdiff 1631.97 percdiff 61.1279 tig 206 read 302402 pos 3198-10959 NOT confused by 3' edge to read 242854 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1122 erate 0.0451 score 1071.40 - absdiff 2414.34 percdiff 105.9588 tig 206 read 302402 pos 3198-10959 NOT confused by 3' edge to read 242855 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1139 erate 0.0430 score 1090.02 - absdiff 2395.72 percdiff 104.7134 tig 206 read 302402 pos 3198-10959 IS confused by 3' edge to read 441601 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1528 erate 0.0652 score 1428.37 - absdiff 2057.37 percdiff 83.7330 tig 206 read 302402 pos 3198-10959 IS confused by 3' edge to read 453698 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1527 erate 0.0452 score 1457.98 - absdiff 2027.76 percdiff 82.0339 tig 206 read 302402 pos 3198-10959 NOT confused by 5' edge to read 698627 - best edge read 140334 len 6613 erate 0.0138 score 6521.74 - alt edge len 536 erate 0.0284 score 520.78 - absdiff 6000.96 percdiff 170.4209 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 192472 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 884 erate 0.0611 score 829.99 - absdiff 1083.88 percdiff 79.0041 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 192473 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 888 erate 0.0664 score 829.04 - absdiff 1084.83 percdiff 79.1008 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 192476 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 889 erate 0.0607 score 835.04 - absdiff 1078.83 percdiff 78.4916 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 506953 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 935 erate 0.0610 score 877.97 - absdiff 1035.90 percdiff 74.2095 saved region 2373:11073 - 7 best edges are potentially confused break tig 206 into up to 3 pieces: 0 1873 unique (length 1873) 1873 11573 repeat (length 9700) 11573 29008 unique (length 17435) Creating Unitig 113165 Creating Unitig 113166 Creating Unitig 113167 For tig 206 unique region 0 1873 - 0/ 3 reads repeat/unique - unitig 113165 created. For tig 206 repeat region 1873 11573 - 46/ 0 reads repeat/unique - unitig 113166 created. For tig 206 unique region 11573 29008 - 0/ 21 reads repeat/unique - unitig 113167 created. Annotating repeats in reads for tig 207/113047. Annotated with 145 overlaps. Scan reads to discard spanned repeats. discard region 36185:37746 - contained in read 545180 35359- 42080 discard region 43111:45005 - contained in read 520339 40688- 46205 thickest edges to the repeat regions: saved region 13311:26297 - closest 5' read 621433 ( +2197) 11114:17086 ( -9211) saved region 13311:26297 - closest 3' read 310135 ( -6490) 19801:26297 ( +0) saved region 40537:43157 - closest 5' read 545180 ( +5178) 35359:42080 ( -1077) saved region 40537:43157 - closest 3' read 520339 ( -151) 40688:46205 ( +3048) search for confused edges: tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 430308 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2649 erate 0.0279 score 2575.09 - absdiff 937.77 percdiff 30.8073 tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 430309 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2658 erate 0.0279 score 2583.84 - absdiff 929.02 percdiff 30.4761 tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 430310 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2629 erate 0.0282 score 2554.86 - absdiff 958.00 percdiff 31.5769 tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 688789 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2869 erate 0.0279 score 2788.95 - absdiff 723.91 percdiff 22.9745 tig 207 read 195650 pos 13430-17905 NOT confused by 3' edge to read 24513 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1111 erate 0.0501 score 1055.34 - absdiff 2432.31 percdiff 107.0798 tig 207 read 195650 pos 13430-17905 IS confused by 3' edge to read 51110 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1782 erate 0.0343 score 1720.88 - absdiff 1766.77 percdiff 67.8416 tig 207 read 195650 pos 13430-17905 IS confused by 3' edge to read 51111 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1734 erate 0.0352 score 1672.96 - absdiff 1814.69 percdiff 70.3284 tig 207 read 195650 pos 13430-17905 IS confused by 3' edge to read 51112 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1790 erate 0.0330 score 1730.93 - absdiff 1756.72 percdiff 67.3256 tig 207 read 195650 pos 13430-17905 NOT confused by 3' edge to read 70681 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1130 erate 0.0504 score 1073.05 - absdiff 2414.60 percdiff 105.8874 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 430308 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3465 erate 0.0624 score 3248.78 - absdiff 526.26 percdiff 14.9849 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 430309 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3474 erate 0.0628 score 3255.83 - absdiff 519.21 percdiff 14.7694 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 430310 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3445 erate 0.0653 score 3220.04 - absdiff 555.00 percdiff 15.8683 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 688789 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3688 erate 0.0586 score 3471.88 - absdiff 303.16 percdiff 8.3665 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 24513 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 669 erate 0.0413 score 641.37 - absdiff 3098.65 percdiff 141.4459 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 51110 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 1346 erate 0.0254 score 1311.81 - absdiff 2428.20 percdiff 96.1317 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 51111 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 1298 erate 0.0293 score 1259.97 - absdiff 2480.05 percdiff 99.2022 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 51112 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 1354 erate 0.0274 score 1316.90 - absdiff 2423.12 percdiff 95.8337 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 70681 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 688 erate 0.0436 score 658.00 - absdiff 3082.01 percdiff 140.1546 tig 207 read 310135 pos 19801-26297 NOT confused by 3' edge to read 527896 - best edge read 125209 len 4122 erate 0.0310 score 3994.22 - alt edge len 706 erate 0.0486 score 671.69 - absdiff 3322.53 percdiff 142.4173 tig 207 read 545180 pos 35359-42080 IS confused by 3' edge to read 153997 - best edge read 520339 len 1387 erate 0.0513 score 1315.85 - alt edge len 681 erate 0.0721 score 631.90 - absdiff 683.95 percdiff 70.2296 saved region 13311:26297 - 11 best edges are potentially confused saved region 40537:43157 - 1 best edges are potentially confused break tig 207 into up to 5 pieces: 0 12811 unique (length 12811) 12811 26797 repeat (length 13986) 26797 40037 unique (length 13240) 40037 43657 repeat (length 3620) 43657 46205 unique (length 2548) Creating Unitig 113168 Creating Unitig 113169 Creating Unitig 113170 Creating Unitig 113171 Creating Unitig 113172 For tig 207 unique region 0 12811 - 0/ 24 reads repeat/unique - unitig 113168 created. For tig 207 repeat region 12811 26797 - 39/ 0 reads repeat/unique - unitig 113169 created. For tig 207 unique region 26797 40037 - 0/ 12 reads repeat/unique - unitig 113170 created. For tig 207 repeat region 40037 43657 - 1/ 0 reads repeat/unique - unitig 113171 created. For tig 207 unique region 43657 46205 - 0/ 5 reads repeat/unique - unitig 113172 created. Annotating repeats in reads for tig 208/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4880:19108 - closest 5' read 657005 ( +1086) 3794:13030 ( -6078) saved region 4880:19108 - closest 3' read 441600 ( -5202) 10082:19640 ( +532) search for confused edges: tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 73634 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1671 erate 0.0449 score 1595.97 - absdiff 5172.69 percdiff 123.6800 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 73636 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1689 erate 0.0361 score 1628.03 - absdiff 5140.64 percdiff 122.4444 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 73637 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1696 erate 0.0578 score 1597.97 - absdiff 5170.69 percdiff 123.6027 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 86838 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1592 erate 0.0635 score 1490.91 - absdiff 5277.76 percdiff 127.7973 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 275648 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 594 erate 0.0741 score 549.98 - absdiff 6218.68 percdiff 169.9407 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 467586 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1577 erate 0.0349 score 1521.96 - absdiff 5246.70 percdiff 126.5695 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 467587 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1566 erate 0.0319 score 1516.04 - absdiff 5252.62 percdiff 126.8028 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 467588 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1572 erate 0.0305 score 1524.05 - absdiff 5244.61 percdiff 126.4871 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 73634 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4502 erate 0.0463 score 4293.56 - absdiff 4366.35 percdiff 67.4160 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 73636 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4520 erate 0.0377 score 4349.60 - absdiff 4310.31 percdiff 66.2641 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 73637 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4527 erate 0.0607 score 4252.21 - absdiff 4407.70 percdiff 68.2723 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 467586 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4408 erate 0.0373 score 4243.58 - absdiff 4416.33 percdiff 68.4517 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 467587 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4396 erate 0.0353 score 4240.82 - absdiff 4419.09 percdiff 68.5091 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 467588 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4403 erate 0.0374 score 4238.33 - absdiff 4421.58 percdiff 68.5610 tig 208 read 204611 pos 6517-15964 NOT confused by 3' edge to read 553063 - best edge read 514862 len 9190 erate 0.0518 score 8713.96 - alt edge len 758 erate 0.0106 score 749.97 - absdiff 7963.99 percdiff 168.3021 discard region 4880:19108 - no confusion in best edges Annotating repeats in reads for tig 212/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12415:20075 - closest 5' read 219119 ( +325) 12090:17655 ( -2420) saved region 12415:20075 - closest 3' read 5296 ( -298) 12713:22019 ( +1944) search for confused edges: discard region 12415:20075 - no confusion in best edges Annotating repeats in reads for tig 216/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 7145:13562 - contained in read 16726 81- 14554 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 217/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3722:7062 - contained in read 152635 2956- 8471 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 220/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 0:2659 - contained in read 109946 0- 8005 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 221/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 18635:19469 - contained in read 79666 6708- 21561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 223/113047. Annotated with 547 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17291:34505 - closest 5' read 20162 ( +9752) 7539:18084 (-16421) saved region 17291:34505 - closest 3' read 716002 (-10578) 27869:36082 ( +1577) saved region 39937:48259 - closest 5' read 529111 ( +0) 39937:46223 ( -2036) saved region 39937:48259 - closest 3' read 183839 ( -201) 40138:49012 ( +753) search for confused edges: tig 223 read 534111 pos 17563-26075 NOT confused by 5' edge to read 716005 - best edge read 295107 len 7193 erate 0.0136 score 7095.18 - alt edge len 4098 erate 0.0211 score 4011.53 - absdiff 3083.64 percdiff 55.5276 tig 223 read 287067 pos 17649-32522 NOT confused by 3' edge to read 142579 - best edge read 295107 len 8527 erate 0.0133 score 8413.59 - alt edge len 3212 erate 0.0273 score 3124.31 - absdiff 5289.28 percdiff 91.6853 tig 223 read 287067 pos 17649-32522 NOT confused by 3' edge to read 211233 - best edge read 295107 len 8527 erate 0.0133 score 8413.59 - alt edge len 5877 erate 0.0131 score 5800.01 - absdiff 2613.58 percdiff 36.7758 tig 223 read 295107 pos 19795-28420 NOT confused by 5' edge to read 142579 - best edge read 534111 len 7146 erate 0.0136 score 7048.81 - alt edge len 3281 erate 0.0211 score 3211.77 - absdiff 3837.04 percdiff 74.7919 tig 223 read 295107 pos 19795-28420 IS confused by 5' edge to read 211233 - best edge read 534111 len 7146 erate 0.0136 score 7048.81 - alt edge len 5948 erate 0.0091 score 5893.87 - absdiff 1154.94 percdiff 17.8470 tig 223 read 295107 pos 19795-28420 NOT confused by 3' edge to read 334386 - best edge read 287067 len 8502 erate 0.0133 score 8388.92 - alt edge len 816 erate 0.0135 score 804.98 - absdiff 7583.94 percdiff 164.9775 tig 223 read 295107 pos 19795-28420 NOT confused by 3' edge to read 385150 - best edge read 287067 len 8502 erate 0.0133 score 8388.92 - alt edge len 652 erate 0.0263 score 634.85 - absdiff 7754.07 percdiff 171.8587 tig 223 read 716005 pos 27872-36097 NOT confused by 3' edge to read 211233 - best edge read 295107 len 5551 erate 0.0187 score 5447.20 - alt edge len 2885 erate 0.0185 score 2831.63 - absdiff 2615.57 percdiff 63.1870 tig 223 read 716005 pos 27872-36097 IS confused by 3' edge to read 534111 - best edge read 295107 len 5551 erate 0.0187 score 5447.20 - alt edge len 4086 erate 0.0211 score 3999.79 - absdiff 1447.41 percdiff 30.6428 tig 223 read 261239 pos 38015-44043 IS confused by 5' edge to read 310540 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 1694 erate 0.0414 score 1623.87 - absdiff 2036.10 percdiff 77.0689 tig 223 read 261239 pos 38015-44043 NOT confused by 5' edge to read 390760 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 747 erate 0.0598 score 702.33 - absdiff 2957.64 percdiff 135.6000 tig 223 read 261239 pos 38015-44043 IS confused by 5' edge to read 607104 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 1990 erate 0.0312 score 1927.91 - absdiff 1732.05 percdiff 61.9933 tig 223 read 261239 pos 38015-44043 IS confused by 5' edge to read 632050 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 3766 erate 0.0333 score 3640.59 - absdiff 19.37 percdiff 0.5307 saved region 17291:34505 - 2 best edges are potentially confused saved region 39937:48259 - 3 best edges are potentially confused break tig 223 into up to 5 pieces: 0 16791 unique (length 16791) 16791 35005 repeat (length 18214) 35005 39437 unique (length 4432) 39437 48759 repeat (length 9322) 48759 53107 unique (length 4348) Creating Unitig 113173 Creating Unitig 113174 Creating Unitig 113175 Creating Unitig 113176 Creating Unitig 113177 For tig 223 unique region 0 16791 - 0/ 16 reads repeat/unique - unitig 113173 created. For tig 223 repeat region 16791 35005 - 53/ 0 reads repeat/unique - unitig 113174 created. For tig 223 unique region 35005 39437 - 0/ 13 reads repeat/unique - unitig 113175 created. For tig 223 repeat region 39437 48759 - 33/ 0 reads repeat/unique - unitig 113176 created. For tig 223 unique region 48759 53107 - 0/ 8 reads repeat/unique - unitig 113177 created. Annotating repeats in reads for tig 225/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 3391:10049 - contained in read 440985 1289- 10049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 226/113047. Annotated with 2893 overlaps. Scan reads to discard spanned repeats. discard region 23539:22501 - contained in read 597630 19551- 27264 thickest edges to the repeat regions: saved region 0:21013 - closest 5' read 653095 ( +0) 0:16421 ( -4592) saved region 0:21013 - closest 3' read 563797 (-14068) 14068:21013 ( +0) search for confused edges: tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 348202 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 5088 erate 0.0201 score 4985.73 - absdiff 6802.98 percdiff 81.1113 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 460113 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 1327 erate 0.0723 score 1231.06 - absdiff 10557.65 percdiff 162.1788 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 526515 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 1332 erate 0.0638 score 1247.02 - absdiff 10541.69 percdiff 161.7354 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 527438 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 1089 erate 0.0619 score 1021.59 - absdiff 10767.12 percdiff 168.1010 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 550681 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 2828 erate 0.0372 score 2722.80 - absdiff 9065.91 percdiff 124.9479 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 348202 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 2783 erate 0.0572 score 2623.81 - absdiff 3899.89 percdiff 85.2667 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 526515 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 1089 erate 0.0661 score 1017.02 - absdiff 5506.69 percdiff 146.0520 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 527438 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 851 erate 0.0576 score 801.98 - absdiff 5721.72 percdiff 156.2098 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 527442 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 847 erate 0.0614 score 794.99 - absdiff 5728.71 percdiff 156.5500 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 550681 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 2542 erate 0.0626 score 2382.87 - absdiff 4140.83 percdiff 92.9837 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 102943 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 4485 erate 0.0292 score 4354.04 - absdiff 7443.47 percdiff 92.1704 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 147129 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1439 erate 0.0702 score 1337.98 - absdiff 10459.52 percdiff 159.2560 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 318714 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 4851 erate 0.0247 score 4731.18 - absdiff 7066.33 percdiff 85.5038 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 361822 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 965 erate 0.0589 score 908.16 - absdiff 10889.34 percdiff 171.4092 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 361823 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1470 erate 0.0489 score 1398.12 - absdiff 10399.39 percdiff 157.6188 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 373854 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1110 erate 0.0523 score 1051.95 - absdiff 10745.56 percdiff 167.2532 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 543826 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1471 erate 0.0401 score 1412.01 - absdiff 10385.49 percdiff 157.2426 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 543827 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1640 erate 0.0662 score 1531.43 - absdiff 10266.07 percdiff 154.0419 tig 226 read 583971 pos 4916-19134 NOT confused by 5' edge to read 550681 - best edge read 493596 len 9961 erate 0.0402 score 9560.57 - alt edge len 1614 erate 0.0549 score 1525.39 - absdiff 8035.18 percdiff 144.9613 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 588149 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1211 erate 0.0621 score 1135.80 - absdiff 10661.71 percdiff 164.8722 tig 226 read 503811 pos 5035-12140 IS confused by 5' edge to read 348202 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 4960 erate 0.0488 score 4717.95 - absdiff 950.63 percdiff 18.3051 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 460113 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 1601 erate 0.0712 score 1487.01 - absdiff 4181.58 percdiff 116.8757 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 526515 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 1111 erate 0.0685 score 1034.90 - absdiff 4633.69 percdiff 138.2472 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 527438 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 872 erate 0.0574 score 821.95 - absdiff 4846.64 percdiff 149.3448 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 527442 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 868 erate 0.0588 score 816.96 - absdiff 4851.62 percdiff 149.6134 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 550681 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 2578 erate 0.0551 score 2435.95 - absdiff 3232.63 percdiff 79.7734 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 102943 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 2272 erate 0.0563 score 2144.09 - absdiff 5177.77 percdiff 109.3979 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 318714 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 2628 erate 0.0639 score 2460.07 - absdiff 4861.79 percdiff 99.4035 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 361823 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 1459 erate 0.0686 score 1358.91 - absdiff 5962.95 percdiff 137.3829 tig 226 read 191090 pos 5145-13227 NOT confused by 5' edge to read 543826 - best edge read 226532 len 6760 erate 0.0589 score 6361.84 - alt edge len 1564 erate 0.0682 score 1457.34 - absdiff 4904.50 percdiff 125.4481 tig 226 read 191090 pos 5145-13227 IS confused by 3' edge to read 550681 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 5777 erate 0.0456 score 5513.57 - absdiff 1808.29 percdiff 28.1766 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 563801 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 1759 erate 0.0625 score 1649.06 - absdiff 5672.80 percdiff 126.4708 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 102943 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 5257 erate 0.0311 score 5093.51 - absdiff 4462.26 percdiff 60.9213 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 318714 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 6626 erate 0.0223 score 6478.24 - absdiff 3077.53 percdiff 38.3875 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 373854 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 1224 erate 0.0612 score 1149.09 - absdiff 8406.68 percdiff 157.0628 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 532025 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 823 erate 0.0622 score 771.81 - absdiff 8783.96 percdiff 170.1069 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 543826 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 915 erate 0.0514 score 867.97 - absdiff 8687.80 percdiff 166.6926 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 543827 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 1589 erate 0.0560 score 1500.02 - absdiff 8055.75 percdiff 145.7292 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 588149 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 1831 erate 0.0644 score 1713.08 - absdiff 7842.69 percdiff 139.1923 tig 226 read 285999 pos 8665-17918 NOT confused by 3' edge to read 102943 - best edge read 493596 len 8262 erate 0.0505 score 7844.77 - alt edge len 5237 erate 0.0321 score 5068.89 - absdiff 2775.88 percdiff 42.9913 tig 226 read 285999 pos 8665-17918 IS confused by 3' edge to read 318714 - best edge read 493596 len 8262 erate 0.0505 score 7844.77 - alt edge len 5939 erate 0.0285 score 5769.74 - absdiff 2075.03 percdiff 30.4826 tig 226 read 285999 pos 8665-17918 NOT confused by 5' edge to read 550681 - best edge read 226533 len 6966 erate 0.0458 score 6646.96 - alt edge len 2780 erate 0.0520 score 2635.44 - absdiff 4011.52 percdiff 86.4328 tig 226 read 226533 pos 9339-18414 NOT confused by 3' edge to read 102943 - best edge read 285999 len 7043 erate 0.0458 score 6720.43 - alt edge len 3629 erate 0.0497 score 3448.64 - absdiff 3271.79 percdiff 64.3479 tig 226 read 226533 pos 9339-18414 NOT confused by 3' edge to read 318714 - best edge read 285999 len 7043 erate 0.0458 score 6720.43 - alt edge len 2995 erate 0.0551 score 2829.98 - absdiff 3890.46 percdiff 81.4720 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 361822 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 794 erate 0.0651 score 742.31 - absdiff 7617.75 percdiff 167.3795 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 361823 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 965 erate 0.0558 score 911.15 - absdiff 7448.91 percdiff 160.6890 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 373854 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1278 erate 0.0611 score 1199.91 - absdiff 7160.15 percdiff 149.7943 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 440441 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1766 erate 0.0513 score 1675.40 - absdiff 6684.66 percdiff 133.2207 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 543826 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1134 erate 0.0477 score 1079.91 - absdiff 7280.16 percdiff 154.2410 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 543827 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1306 erate 0.0641 score 1222.29 - absdiff 7137.78 percdiff 148.9776 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 550681 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 4737 erate 0.0530 score 4485.94 - absdiff 3874.13 percdiff 60.3164 tig 226 read 226532 pos 9540-18350 NOT confused by 5' edge to read 102943 - best edge read 226533 len 8696 erate 0.0343 score 8397.73 - alt edge len 2515 erate 0.0525 score 2382.96 - absdiff 6014.76 percdiff 111.5840 tig 226 read 226532 pos 9540-18350 NOT confused by 5' edge to read 318714 - best edge read 226533 len 8696 erate 0.0343 score 8397.73 - alt edge len 3553 erate 0.0428 score 3400.93 - absdiff 4996.80 percdiff 84.7011 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 361822 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1311 erate 0.0698 score 1219.49 - absdiff 5305.15 percdiff 137.0108 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 361823 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1312 erate 0.0618 score 1230.92 - absdiff 5293.73 percdiff 136.5143 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 373854 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1286 erate 0.0645 score 1203.05 - absdiff 5321.59 percdiff 137.7278 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 532025 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 551 erate 0.0631 score 516.23 - absdiff 6008.41 percdiff 170.6723 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 543826 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1142 erate 0.0552 score 1078.96 - absdiff 5445.68 percdiff 143.2395 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 543827 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1482 erate 0.0645 score 1386.41 - absdiff 5138.24 percdiff 129.9001 tig 226 read 226532 pos 9540-18350 IS confused by 3' edge to read 550681 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 4759 erate 0.0566 score 4489.64 - absdiff 2035.01 percdiff 36.9521 saved region 0:21013 - 4 best edges are potentially confused break tig 226 into up to 2 pieces: 0 21513 repeat (length 21513) 21513 39378 unique (length 17865) Creating Unitig 113178 Creating Unitig 113179 For tig 226 repeat region 0 21513 - 515/ 0 reads repeat/unique - unitig 113178 created. For tig 226 unique region 21513 39378 - 0/ 17 reads repeat/unique - unitig 113179 created. Annotating repeats in reads for tig 228/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 16354:20634 - contained in read 553063 12597- 20634 thickest edges to the repeat regions: saved region 10470:13104 - closest read 690323 ( +139) 10331:14551 ( +1447) (contained) saved region 10470:13104 - closest read 533769 ( +11) 10459:13686 ( +582) (contained) saved region 10470:13104 - closest read 168851 ( +0) 10470:14081 ( +977) (contained) saved region 10470:13104 - closest 5' read 690323 ( +139) 10331:14551 ( +1447) saved region 10470:13104 - closest 3' read 690323 ( +139) 10331:14551 ( +1447) search for confused edges: discard region 10470:13104 - no confusion in best edges Annotating repeats in reads for tig 241/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 29097:31013 - contained in read 408386 20212- 33296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 244/113047. Annotated with 1281 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 29103:31291 - closest read 399565 ( +7236) 21867:31420 ( +129) (contained) saved region 29103:31291 - closest 5' read 399565 ( +7236) 21867:31420 ( +129) saved region 29103:31291 - closest 3' read 399565 ( +7236) 21867:31420 ( +129) saved region 32298:44832 - closest 5' read 237114 ( +2337) 29961:36057 ( -8775) saved region 32298:44832 - closest 3' read 340260 ( -5779) 38077:45721 ( +889) search for confused edges: tig 244 read 649937 pos 29183-35991 IS confused by 5' edge to read 153501 - best edge read 559084 len 2377 erate 0.0420 score 2277.17 - alt edge len 2184 erate 0.0696 score 2031.99 - absdiff 245.17 percdiff 11.3791 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 36446 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3291 erate 0.0708 score 3058.00 - absdiff 3244.95 percdiff 69.3296 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 61530 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3489 erate 0.0646 score 3263.61 - absdiff 3039.34 percdiff 63.5409 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 112243 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3466 erate 0.0563 score 3270.86 - absdiff 3032.09 percdiff 63.3412 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 127603 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 2174 erate 0.0614 score 2040.52 - absdiff 4262.43 percdiff 102.1742 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 198071 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 697 erate 0.0552 score 658.53 - absdiff 5644.42 percdiff 162.1617 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 280576 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 2933 erate 0.0581 score 2762.59 - absdiff 3540.36 percdiff 78.1058 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 311374 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3537 erate 0.0690 score 3292.95 - absdiff 3010.00 percdiff 62.7352 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 335606 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 1556 erate 0.0687 score 1449.10 - absdiff 4853.85 percdiff 125.2274 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 448733 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3457 erate 0.0604 score 3248.20 - absdiff 3054.75 percdiff 63.9662 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 498322 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3458 erate 0.0532 score 3274.03 - absdiff 3028.92 percdiff 63.2541 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 498472 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3453 erate 0.0613 score 3241.33 - absdiff 3061.62 percdiff 64.1561 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 498473 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3477 erate 0.0621 score 3261.08 - absdiff 3041.87 percdiff 63.6107 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 509401 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 1917 erate 0.0657 score 1791.05 - absdiff 4511.90 percdiff 111.4874 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 537046 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3457 erate 0.0605 score 3247.85 - absdiff 3055.10 percdiff 63.9758 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 688040 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 2890 erate 0.0570 score 2725.27 - absdiff 3577.68 percdiff 79.2555 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 701935 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3466 erate 0.0711 score 3219.57 - absdiff 3083.38 percdiff 64.7598 tig 244 read 559083 pos 34744-44240 NOT confused by 5' edge to read 31648 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 3314 erate 0.0721 score 3075.06 - absdiff 2647.02 percdiff 60.1791 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 112243 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5952 erate 0.0495 score 5657.38 - absdiff 64.71 percdiff 1.1372 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 127603 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 4663 erate 0.0613 score 4377.16 - absdiff 1344.92 percdiff 26.6342 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 175693 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5915 erate 0.0666 score 5521.06 - absdiff 201.02 percdiff 3.5759 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 338205 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5932 erate 0.0604 score 5573.71 - absdiff 148.37 percdiff 2.6271 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 448733 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5951 erate 0.0550 score 5623.69 - absdiff 98.39 percdiff 1.7343 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 498322 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5950 erate 0.0454 score 5679.87 - absdiff 42.21 percdiff 0.7404 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 498323 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 6033 erate 0.0548 score 5702.39 - absdiff 19.69 percdiff 0.3447 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 498473 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5970 erate 0.0524 score 5657.17 - absdiff 64.91 percdiff 1.1408 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 509401 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 4405 erate 0.0602 score 4139.82 - absdiff 1582.26 percdiff 32.0884 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 701935 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5959 erate 0.0614 score 5593.12 - absdiff 128.96 percdiff 2.2795 tig 244 read 611765 pos 37910-44702 NOT confused by 5' edge to read 13083 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 2396 erate 0.0701 score 2228.04 - absdiff 3436.81 percdiff 87.0862 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 40951 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4202 erate 0.0317 score 4068.80 - absdiff 1596.05 percdiff 32.7946 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 40952 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4181 erate 0.0376 score 4023.79 - absdiff 1641.06 percdiff 33.8759 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 40953 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4163 erate 0.0345 score 4019.38 - absdiff 1645.48 percdiff 33.9826 tig 244 read 611765 pos 37910-44702 IS confused by 3' edge to read 112243 - best edge read 340261 len 6401 erate 0.0715 score 5943.33 - alt edge len 6387 erate 0.0698 score 5941.19 - absdiff 2.14 percdiff 0.0360 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 293759 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4147 erate 0.0512 score 3934.67 - absdiff 1730.18 percdiff 36.0472 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 446890 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4247 erate 0.0287 score 4125.11 - absdiff 1539.74 percdiff 31.4555 tig 244 read 611765 pos 37910-44702 NOT confused by 5' edge to read 488985 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 3056 erate 0.0626 score 2864.69 - absdiff 2800.16 percdiff 65.6578 tig 244 read 611765 pos 37910-44702 NOT confused by 5' edge to read 517830 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 3085 erate 0.0482 score 2936.30 - absdiff 2728.55 percdiff 63.4461 tig 244 read 611765 pos 37910-44702 IS confused by 3' edge to read 537046 - best edge read 340261 len 6401 erate 0.0715 score 5943.33 - alt edge len 6384 erate 0.0716 score 5926.91 - absdiff 16.42 percdiff 0.2767 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 581053 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 5841 erate 0.0243 score 5699.06 - absdiff 34.21 percdiff 0.6021 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 640013 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4434 erate 0.0504 score 4210.53 - absdiff 1454.33 percdiff 29.4536 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 709264 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 3897 erate 0.0468 score 3714.62 - absdiff 1950.23 percdiff 41.5851 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 13083 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2233 erate 0.0424 score 2138.32 - absdiff 3694.52 percdiff 92.6971 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 40951 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4035 erate 0.0187 score 3959.55 - absdiff 1873.29 percdiff 38.2602 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 40952 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4014 erate 0.0248 score 3914.45 - absdiff 1918.38 percdiff 39.3624 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 40953 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3996 erate 0.0202 score 3915.28 - absdiff 1917.56 percdiff 39.3421 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 57852 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1577 erate 0.0341 score 1523.22 - absdiff 4309.61 percdiff 117.1717 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 65341 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4634 erate 0.0324 score 4483.86 - absdiff 1348.98 percdiff 26.1514 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 69310 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3998 erate 0.0472 score 3809.29 - absdiff 2023.54 percdiff 41.9729 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 132544 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2278 erate 0.0396 score 2187.79 - absdiff 3645.05 percdiff 90.8918 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 159138 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2948 erate 0.0722 score 2735.15 - absdiff 3097.68 percdiff 72.3083 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 169948 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3146 erate 0.0282 score 3057.28 - absdiff 2775.55 percdiff 62.4413 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 195437 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1344 erate 0.0383 score 1292.52 - absdiff 4540.31 percdiff 127.4409 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 230236 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3325 erate 0.0647 score 3109.87 - absdiff 2722.96 percdiff 60.8980 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 235367 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1494 erate 0.0607 score 1403.31 - absdiff 4429.52 percdiff 122.4276 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 280493 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4384 erate 0.0172 score 4308.60 - absdiff 1524.24 percdiff 30.0597 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 293759 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3980 erate 0.0350 score 3840.70 - absdiff 1992.14 percdiff 41.1874 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 330954 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2611 erate 0.0378 score 2512.30 - absdiff 3320.53 percdiff 79.5800 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 332301 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 816 erate 0.0395 score 783.77 - absdiff 5049.07 percdiff 152.6181 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 336567 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3069 erate 0.0705 score 2852.64 - absdiff 2980.20 percdiff 68.6250 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 358755 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 628 erate 0.0701 score 583.98 - absdiff 5248.86 percdiff 163.5971 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 442834 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3047 erate 0.0593 score 2866.31 - absdiff 2966.52 percdiff 68.2026 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 446890 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4080 erate 0.0140 score 4022.88 - absdiff 1809.96 percdiff 36.7291 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 454805 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 913 erate 0.0715 score 847.72 - absdiff 4985.12 percdiff 149.2425 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 454809 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 919 erate 0.0491 score 873.88 - absdiff 4958.96 percdiff 147.8805 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 475899 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3739 erate 0.0434 score 3576.73 - absdiff 2256.11 percdiff 47.9535 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 478088 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 922 erate 0.0664 score 860.78 - absdiff 4972.06 percdiff 148.5612 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 478090 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 907 erate 0.0598 score 852.76 - absdiff 4980.08 percdiff 148.9792 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 488985 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2891 erate 0.0377 score 2782.01 - absdiff 3050.83 percdiff 70.8272 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 515241 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1044 erate 0.0449 score 997.12 - absdiff 4835.71 percdiff 141.6029 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 515242 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1054 erate 0.0520 score 999.19 - absdiff 4833.64 percdiff 141.4995 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 517830 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2920 erate 0.0269 score 2841.45 - absdiff 2991.38 percdiff 68.9713 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 531565 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 628 erate 0.0599 score 590.38 - absdiff 5242.45 percdiff 163.2345 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 581053 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 5671 erate 0.0150 score 5585.93 - absdiff 246.90 percdiff 4.3245 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 605986 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 5678 erate 0.0164 score 5584.88 - absdiff 247.96 percdiff 4.3434 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 607786 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1903 erate 0.0337 score 1838.87 - absdiff 3993.97 percdiff 104.1220 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 633924 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2594 erate 0.0493 score 2466.12 - absdiff 3366.72 percdiff 81.1360 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 640013 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4266 erate 0.0363 score 4111.14 - absdiff 1721.69 percdiff 34.6278 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 702991 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2318 erate 0.0412 score 2222.50 - absdiff 3610.34 percdiff 89.6384 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 709264 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3730 erate 0.0307 score 3615.49 - absdiff 2217.35 percdiff 46.9363 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 711312 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2006 erate 0.0636 score 1878.42 - absdiff 3954.42 percdiff 102.5623 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 711313 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2007 erate 0.0436 score 1919.49 - absdiff 3913.34 percdiff 100.9591 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 711314 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1506 erate 0.0664 score 1406.00 - absdiff 4426.84 percdiff 122.3079 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 720778 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2912 erate 0.0349 score 2810.37 - absdiff 3022.47 percdiff 69.9385 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 720780 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2923 erate 0.0349 score 2820.99 - absdiff 3011.85 percdiff 69.6074 discard region 29103:31291 - no confusion in best edges saved region 32298:44832 - 32 best edges are potentially confused break tig 244 into up to 3 pieces: 0 31798 unique (length 31798) 31798 45332 repeat (length 13534) 45332 45729 unique (length 397) Creating Unitig 113180 Creating Unitig 113181 Creating Unitig 113182 For tig 244 unique region 0 31798 - 0/ 36 reads repeat/unique - unitig 113180 created. For tig 244 repeat region 31798 45332 - 293/ 0 reads repeat/unique - unitig 113181 created. For tig 244 unique region 45332 45729 - 0/ 5 reads repeat/unique - unitig 113182 created. Annotating repeats in reads for tig 245/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 30455:31299 - closest read 646353 ( +0) 30455:36999 ( +5700) (contained) saved region 30455:31299 - closest 5' read 646353 ( +0) 30455:36999 ( +5700) saved region 30455:31299 - closest 3' read 646353 ( +0) 30455:36999 ( +5700) search for confused edges: discard region 30455:31299 - no confusion in best edges Annotating repeats in reads for tig 246/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1727:9794 - contained in read 376898 130- 9794 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 247/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 17446:21494 - contained in read 440481 11224- 24957 thickest edges to the repeat regions: saved region 9748:15965 - closest 5' read 436954 ( +0) 9748:15453 ( -512) saved region 9748:15965 - closest 3' read 254925 ( -6) 9754:17165 ( +1200) search for confused edges: tig 247 read 254925 pos 9754-17165 IS confused by 5' edge to read 530392 - best edge read 708643 len 2862 erate 0.0248 score 2791.02 - alt edge len 909 erate 0.0242 score 887.00 - absdiff 1904.02 percdiff 103.5349 tig 247 read 254925 pos 9754-17165 IS confused by 5' edge to read 530396 - best edge read 708643 len 2862 erate 0.0248 score 2791.02 - alt edge len 1011 erate 0.0277 score 983.00 - absdiff 1808.03 percdiff 95.8144 tig 247 read 254925 pos 9754-17165 IS confused by 5' edge to read 639051 - best edge read 708643 len 2862 erate 0.0248 score 2791.02 - alt edge len 2609 erate 0.0165 score 2565.95 - absdiff 225.07 percdiff 8.4029 saved region 9748:15965 - 3 best edges are potentially confused break tig 247 into up to 3 pieces: 0 9248 unique (length 9248) 9248 16465 repeat (length 7217) 16465 37654 unique (length 21189) Creating Unitig 113183 Creating Unitig 113184 Creating Unitig 113185 For tig 247 unique region 0 9248 - 0/ 17 reads repeat/unique - unitig 113183 created. For tig 247 repeat region 9248 16465 - 23/ 0 reads repeat/unique - unitig 113184 created. For tig 247 unique region 16465 37654 - 0/ 45 reads repeat/unique - unitig 113185 created. Annotating repeats in reads for tig 252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 253/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 21207:22352 - contained in read 235132 15959- 22931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 256/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 24535:25679 - contained in read 131356 20097- 25679 thickest edges to the repeat regions: saved region 15821:18768 - closest 5' read 328770 ( +3251) 12570:18521 ( -247) saved region 15821:18768 - closest 3' read 546592 ( -85) 15906:18768 ( +0) search for confused edges: discard region 15821:18768 - no confusion in best edges Annotating repeats in reads for tig 260/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 3445:7667 - contained in read 70391 1025- 7667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 266/113047. Annotated with 135 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4173:11370 - closest 5' read 548717 ( +3495) 678:11340 ( -30) saved region 4173:11370 - closest 3' read 662024 ( -1788) 5961:11370 ( +0) search for confused edges: discard region 4173:11370 - no confusion in best edges Annotating repeats in reads for tig 270/113047. Annotated with 150 overlaps. Scan reads to discard spanned repeats. discard region 39309:40437 - contained in read 625712 33061- 42021 thickest edges to the repeat regions: saved region 4510:13062 - closest read 261126 ( +1915) 2595:13062 ( +0) (contained) saved region 4510:13062 - closest 5' read 261126 ( +1915) 2595:13062 ( +0) saved region 4510:13062 - closest 3' read 261126 ( +1915) 2595:13062 ( +0) saved region 13202:27538 - closest 5' read 221258 ( +955) 12247:20326 ( -7212) saved region 13202:27538 - closest 3' read 396629 ( -7268) 20470:29641 ( +2103) saved region 28232:32997 - closest 5' read 329827 ( +3157) 25075:32342 ( -655) saved region 28232:32997 - closest 3' read 297879 ( -1) 28233:33498 ( +501) search for confused edges: tig 270 read 221258 pos 12247-20326 NOT confused by 3' edge to read 19234 - best edge read 146007 len 6814 erate 0.0231 score 6656.60 - alt edge len 2324 erate 0.0344 score 2244.05 - absdiff 4412.54 percdiff 99.1510 tig 270 read 221258 pos 12247-20326 IS confused by 3' edge to read 77734 - best edge read 146007 len 6814 erate 0.0231 score 6656.60 - alt edge len 5071 erate 0.0479 score 4828.10 - absdiff 1828.50 percdiff 31.8423 tig 270 read 221258 pos 12247-20326 NOT confused by 3' edge to read 625856 - best edge read 146007 len 6814 erate 0.0231 score 6656.60 - alt edge len 3389 erate 0.0224 score 3313.09 - absdiff 3343.51 percdiff 67.0736 tig 270 read 146005 pos 13455-20698 NOT confused by 5' edge to read 118311 - best edge read 146007 len 7128 erate 0.0235 score 6960.49 - alt edge len 561 erate 0.0591 score 527.84 - absdiff 6432.65 percdiff 171.8044 tig 270 read 146005 pos 13455-20698 NOT confused by 5' edge to read 118312 - best edge read 146007 len 7128 erate 0.0235 score 6960.49 - alt edge len 538 erate 0.0561 score 507.82 - absdiff 6452.67 percdiff 172.8014 tig 270 read 146007 pos 13472-20608 NOT confused by 5' edge to read 118311 - best edge read 221258 len 6753 erate 0.0231 score 6597.01 - alt edge len 562 erate 0.0623 score 526.99 - absdiff 6070.02 percdiff 170.4106 tig 270 read 146007 pos 13472-20608 NOT confused by 5' edge to read 118312 - best edge read 221258 len 6753 erate 0.0231 score 6597.01 - alt edge len 541 erate 0.0555 score 510.97 - absdiff 6086.03 percdiff 171.2450 tig 270 read 146007 pos 13472-20608 NOT confused by 3' edge to read 625856 - best edge read 146005 len 7058 erate 0.0235 score 6892.14 - alt edge len 3662 erate 0.0702 score 3404.93 - absdiff 3487.21 percdiff 67.7321 tig 270 read 151544 pos 17319-27074 NOT confused by 5' edge to read 30453 - best edge read 396629 len 6446 erate 0.0390 score 6194.61 - alt edge len 3486 erate 0.0648 score 3260.11 - absdiff 2934.50 percdiff 62.0748 tig 270 read 151544 pos 17319-27074 IS confused by 3' edge to read 668068 - best edge read 146005 len 3289 erate 0.0632 score 3081.14 - alt edge len 2073 erate 0.0516 score 1966.03 - absdiff 1115.10 percdiff 44.1872 tig 270 read 396629 pos 20470-29641 NOT confused by 5' edge to read 230504 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 2731 erate 0.0511 score 2591.45 - absdiff 3796.32 percdiff 84.5580 tig 270 read 396629 pos 20470-29641 NOT confused by 5' edge to read 339921 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 2626 erate 0.0406 score 2519.38 - absdiff 3868.38 percdiff 86.8602 tig 270 read 396629 pos 20470-29641 IS confused by 5' edge to read 407178 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 4640 erate 0.0373 score 4466.93 - absdiff 1920.84 percdiff 35.3919 tig 270 read 396629 pos 20470-29641 NOT confused by 5' edge to read 567925 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 1745 erate 0.0529 score 1652.69 - absdiff 4735.08 percdiff 117.7813 tig 270 read 81572 pos 21060-32211 NOT confused by 5' edge to read 236735 - best edge read 297879 len 3909 erate 0.0310 score 3787.82 - alt edge len 1701 erate 0.0276 score 1654.05 - absdiff 2133.77 percdiff 78.4204 tig 270 read 81572 pos 21060-32211 NOT confused by 5' edge to read 554849 - best edge read 297879 len 3909 erate 0.0310 score 3787.82 - alt edge len 688 erate 0.0195 score 674.58 - absdiff 3113.24 percdiff 139.5318 tig 270 read 81572 pos 21060-32211 NOT confused by 5' edge to read 554851 - best edge read 297879 len 3909 erate 0.0310 score 3787.82 - alt edge len 687 erate 0.0180 score 674.63 - absdiff 3113.19 percdiff 139.5280 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 110878 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 3739 erate 0.0452 score 3570.00 - absdiff 227.12 percdiff 6.1658 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 145128 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 2993 erate 0.0234 score 2922.96 - absdiff 874.16 percdiff 26.0162 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 261831 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1145 erate 0.0387 score 1100.69 - absdiff 2696.43 percdiff 110.1077 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 261832 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1123 erate 0.0461 score 1071.23 - absdiff 2725.89 percdiff 111.9841 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 318674 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1419 erate 0.0369 score 1366.64 - absdiff 2430.48 percdiff 94.1361 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 326332 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 919 erate 0.0532 score 870.11 - absdiff 2927.01 percdiff 125.4282 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 442416 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1237 erate 0.0531 score 1171.32 - absdiff 2625.80 percdiff 105.6994 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 632225 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 3631 erate 0.0237 score 3544.95 - absdiff 252.17 percdiff 6.8693 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 632226 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 3638 erate 0.0231 score 3553.96 - absdiff 243.16 percdiff 6.6155 discard region 4510:13062 - no confusion in best edges saved region 13202:27538 - 3 best edges are potentially confused saved region 28232:32997 - 4 best edges are potentially confused merge extended regions 12702:28038 and 27732:33497 break tig 270 into up to 3 pieces: 0 12702 unique (length 12702) 12702 33497 repeat (length 20795) 33497 49653 unique (length 16156) Creating Unitig 113186 Creating Unitig 113187 Creating Unitig 113188 For tig 270 unique region 0 12702 - 0/ 33 reads repeat/unique - unitig 113186 created. For tig 270 repeat region 12702 33497 - 36/ 0 reads repeat/unique - unitig 113187 created. For tig 270 unique region 33497 49653 - 0/ 25 reads repeat/unique - unitig 113188 created. Annotating repeats in reads for tig 278/113047. Annotated with 1026 overlaps. Scan reads to discard spanned repeats. discard region 0:699 - contained in read 190393 0- 7617 discard region 25151:25719 - contained in read 446299 12446- 29028 discard region 28128:32297 - contained in read 642219 21414- 32947 discard region 34498:39843 - contained in read 299674 31893- 41808 thickest edges to the repeat regions: saved region 6989:19475 - closest 5' read 694121 ( +6724) 265:8189 (-11286) saved region 6989:19475 - closest 3' read 446299 ( -5457) 12446:29028 ( +9553) search for confused edges: tig 278 read 622279 pos 7511-14032 IS confused by 3' edge to read 48676 - best edge read 694120 len 672 erate 0.0625 score 630.00 - alt edge len 665 erate 0.0586 score 626.03 - absdiff 3.97 percdiff 0.6320 tig 278 read 446299 pos 12446-29028 IS confused by 5' edge to read 161542 - best edge read 622279 len 1575 erate 0.0598 score 1480.82 - alt edge len 1667 erate 0.0673 score 1554.81 - absdiff 74.00 percdiff 4.8752 saved region 6989:19475 - 2 best edges are potentially confused break tig 278 into up to 3 pieces: 0 6489 unique (length 6489) 6489 19975 repeat (length 13486) 19975 41827 unique (length 21852) Creating Unitig 113189 Creating Unitig 113190 Creating Unitig 113191 For tig 278 unique region 0 6489 - 0/ 6 reads repeat/unique - unitig 113189 created. For tig 278 repeat region 6489 19975 - 17/ 0 reads repeat/unique - unitig 113190 created. For tig 278 unique region 19975 41827 - 0/ 34 reads repeat/unique - unitig 113191 created. Annotating repeats in reads for tig 280/113047. Annotated with 1374 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10175:10897 - closest read 680566 ( +9638) 537:10897 ( +0) (contained) saved region 10175:10897 - closest 5' read 680566 ( +9638) 537:10897 ( +0) saved region 10175:10897 - closest 3' read 680566 ( +9638) 537:10897 ( +0) saved region 25345:26502 - closest read 417331 ( +5862) 19483:26502 ( +0) (contained) saved region 25345:26502 - closest 5' read 417331 ( +5862) 19483:26502 ( +0) saved region 25345:26502 - closest 3' read 417331 ( +5862) 19483:26502 ( +0) saved region 30555:38861 - closest 5' read 22692 ( +4630) 25925:31951 ( -6910) saved region 30555:38861 - closest 3' read 114216 ( -2587) 33142:38861 ( +0) search for confused edges: tig 280 read 45991 pos 10217-17837 IS confused by 5' edge to read 147947 - best edge read 680566 len 677 erate 0.0640 score 633.67 - alt edge len 657 erate 0.0511 score 623.43 - absdiff 10.24 percdiff 1.6299 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 36300 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1033 erate 0.0538 score 977.42 - absdiff 3014.12 percdiff 121.3177 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 36301 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1021 erate 0.0613 score 958.41 - absdiff 3033.13 percdiff 122.5519 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 52536 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1346 erate 0.0371 score 1296.06 - absdiff 2695.48 percdiff 101.9547 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 52537 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1333 erate 0.0345 score 1287.01 - absdiff 2704.53 percdiff 102.4725 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 94597 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1383 erate 0.0362 score 1332.94 - absdiff 2658.61 percdiff 99.8637 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 166756 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2064 erate 0.0361 score 1989.49 - absdiff 2002.06 percdiff 66.9468 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 166758 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2063 erate 0.0403 score 1979.86 - absdiff 2011.69 percdiff 67.3773 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 201858 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2864 erate 0.0489 score 2723.95 - absdiff 1267.60 percdiff 37.7514 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 236227 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 540 erate 0.0504 score 512.78 - absdiff 3478.76 percdiff 154.4630 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 238313 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2278 erate 0.0303 score 2208.98 - absdiff 1782.57 percdiff 57.4974 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 247072 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2069 erate 0.0582 score 1948.58 - absdiff 2042.96 percdiff 68.7851 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 250064 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2590 erate 0.0641 score 2423.98 - absdiff 1567.57 percdiff 48.8679 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 259113 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2825 erate 0.0356 score 2724.43 - absdiff 1267.12 percdiff 37.7344 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 266065 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1054 erate 0.0636 score 986.97 - absdiff 3004.58 percdiff 120.7020 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 336357 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2354 erate 0.0416 score 2256.07 - absdiff 1735.47 percdiff 55.5563 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 554187 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1242 erate 0.0392 score 1193.31 - absdiff 2798.23 percdiff 107.9386 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 599347 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2700 erate 0.0426 score 2584.98 - absdiff 1406.57 percdiff 42.7754 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 599349 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2699 erate 0.0453 score 2576.74 - absdiff 1414.81 percdiff 43.0801 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 608472 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2246 erate 0.0205 score 2199.96 - absdiff 1791.59 percdiff 57.8725 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 608476 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2242 erate 0.0196 score 2198.06 - absdiff 1793.49 percdiff 57.9517 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 609430 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1424 erate 0.0465 score 1357.78 - absdiff 2633.76 percdiff 98.4707 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 609431 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1417 erate 0.0479 score 1349.13 - absdiff 2642.42 percdiff 98.9546 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 609433 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1420 erate 0.0413 score 1361.35 - absdiff 2630.19 percdiff 98.2717 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 611814 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2307 erate 0.0365 score 2222.79 - absdiff 1768.75 percdiff 56.9248 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 628083 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2042 erate 0.0181 score 2005.04 - absdiff 1986.51 percdiff 66.2546 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 628084 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2032 erate 0.0167 score 1998.07 - absdiff 1993.48 percdiff 66.5646 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 637543 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1678 erate 0.0459 score 1600.98 - absdiff 2390.57 percdiff 85.4915 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 643871 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2730 erate 0.0361 score 2631.45 - absdiff 1360.10 percdiff 41.0720 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 657250 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 692 erate 0.0505 score 657.05 - absdiff 3334.49 percdiff 143.4622 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 657252 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 723 erate 0.0636 score 677.02 - absdiff 3314.53 percdiff 141.9935 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 166756 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3644 erate 0.0680 score 3396.21 - absdiff 2017.71 percdiff 45.8043 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 201858 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4418 erate 0.0560 score 4170.59 - absdiff 1243.32 percdiff 25.9444 tig 280 read 114215 pos 33024-38733 NOT confused by 3' edge to read 212668 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3012 erate 0.0560 score 2843.33 - absdiff 2570.59 percdiff 62.2626 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 238313 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3860 erate 0.0345 score 3726.83 - absdiff 1687.09 percdiff 36.9135 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 250064 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4173 erate 0.0578 score 3931.80 - absdiff 1482.11 percdiff 31.7175 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 259113 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4404 erate 0.0393 score 4230.92 - absdiff 1182.99 percdiff 24.5311 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 336357 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3935 erate 0.0534 score 3724.87 - absdiff 1689.04 percdiff 36.9643 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 628083 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3622 erate 0.0309 score 3510.08 - absdiff 1903.83 percdiff 42.6678 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 628084 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3612 erate 0.0277 score 3511.95 - absdiff 1901.97 percdiff 42.6170 tig 280 read 114215 pos 33024-38733 NOT confused by 3' edge to read 637543 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3256 erate 0.0424 score 3117.95 - absdiff 2295.97 percdiff 53.8211 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 643871 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4313 erate 0.0455 score 4116.76 - absdiff 1297.16 percdiff 27.2207 tig 280 read 114215 pos 33024-38733 NOT confused by 3' edge to read 671333 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 2140 erate 0.0587 score 2014.38 - absdiff 3399.53 percdiff 91.5293 saved region 10175:10897 - 1 best edges are potentially confused discard region 25345:26502 - no confusion in best edges saved region 30555:38861 - 25 best edges are potentially confused break tig 280 into up to 4 pieces: 0 9675 unique (length 9675) 9675 11397 repeat (length 1722) 11397 30055 unique (length 18658) 30055 38861 repeat (length 8806) Creating Unitig 113192 Creating Unitig 113193 Creating Unitig 113194 For tig 280 unique region 0 9675 - 0/ 6 reads repeat/unique - unitig 113192 created. For tig 280 repeat region 9675 11397 - 0/ 0 repeat/unique reads - no new unitig created. For tig 280 unique region 11397 30055 - 0/ 14 reads repeat/unique - unitig 113193 created. For tig 280 repeat region 30055 38861 - 27/ 0 reads repeat/unique - unitig 113194 created. Annotating repeats in reads for tig 281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 282/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 20604:22145 - contained in read 535329 9799- 23987 discard region 30241:32955 - contained in read 182698 26390- 38037 discard region 39152:40466 - contained in read 534139 36999- 43920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 284/113047. Annotated with 1252 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19547:33053 - closest 5' read 268102 ( +0) 19547:28897 ( -4156) saved region 19547:33053 - closest 3' read 350506 ( -5445) 24992:33053 ( +0) search for confused edges: tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 10484 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1777 erate 0.0593 score 1671.62 - absdiff 1529.41 percdiff 62.7751 tig 284 read 530119 pos 18582-25836 NOT confused by 5' edge to read 132228 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 597 erate 0.0642 score 558.67 - absdiff 2642.36 percdiff 140.5620 tig 284 read 530119 pos 18582-25836 NOT confused by 5' edge to read 277944 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1104 erate 0.0590 score 1038.86 - absdiff 2162.17 percdiff 101.9915 tig 284 read 530119 pos 18582-25836 NOT confused by 5' edge to read 277945 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1103 erate 0.0664 score 1029.76 - absdiff 2171.27 percdiff 102.6413 tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 671152 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1414 erate 0.0610 score 1327.75 - absdiff 1873.28 percdiff 82.7281 tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 698389 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 2035 erate 0.0586 score 1915.75 - absdiff 1285.28 percdiff 50.2379 tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 698390 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 2044 erate 0.0510 score 1939.76 - absdiff 1261.27 percdiff 49.0693 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 9995 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2097 erate 0.0410 score 2011.02 - absdiff 3242.16 percdiff 89.2639 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 10484 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 984 erate 0.0288 score 955.66 - absdiff 4297.52 percdiff 138.4322 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 27942 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2421 erate 0.0317 score 2344.25 - absdiff 2908.92 percdiff 76.5765 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 82739 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 850 erate 0.0379 score 817.78 - absdiff 4435.39 percdiff 146.1183 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 268941 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2345 erate 0.0386 score 2254.48 - absdiff 2998.70 percdiff 79.8836 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 323974 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2316 erate 0.0387 score 2226.37 - absdiff 3026.81 percdiff 80.9356 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 323976 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2375 erate 0.0387 score 2283.09 - absdiff 2970.09 percdiff 78.8213 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 353956 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2285 erate 0.0388 score 2196.34 - absdiff 3056.84 percdiff 82.0680 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 353957 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1750 erate 0.0404 score 1679.30 - absdiff 3573.88 percdiff 103.1054 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 429277 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2583 erate 0.0366 score 2488.46 - absdiff 2764.72 percdiff 71.4246 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 453691 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1825 erate 0.0434 score 1745.80 - absdiff 3507.38 percdiff 100.2257 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 502457 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2201 erate 0.0352 score 2123.52 - absdiff 3129.65 percdiff 84.8524 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 544929 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2333 erate 0.0488 score 2219.15 - absdiff 3034.03 percdiff 81.2071 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 587506 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 605 erate 0.0599 score 568.76 - absdiff 4684.42 percdiff 160.9230 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 587509 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 615 erate 0.0487 score 585.05 - absdiff 4668.13 percdiff 159.9160 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 596060 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1225 erate 0.0247 score 1194.74 - absdiff 4058.44 percdiff 125.8836 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 638060 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1016 erate 0.0399 score 975.46 - absdiff 4277.72 percdiff 137.3564 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 671152 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 622 erate 0.0507 score 590.46 - absdiff 4662.71 percdiff 159.5824 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 698389 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1241 erate 0.0333 score 1199.67 - absdiff 4053.50 percdiff 125.6345 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 698390 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1250 erate 0.0225 score 1221.88 - absdiff 4031.30 percdiff 124.5180 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 60396 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 3098 erate 0.0694 score 2883.00 - absdiff 2348.85 percdiff 57.8902 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 89750 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1573 erate 0.0513 score 1492.31 - absdiff 3739.55 percdiff 111.2272 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 98320 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1185 erate 0.0300 score 1149.45 - absdiff 4960.19 percdiff 136.6615 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 98325 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1184 erate 0.0416 score 1134.75 - absdiff 4974.90 percdiff 137.3449 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 196030 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2632 erate 0.0490 score 2503.03 - absdiff 2728.82 percdiff 70.5588 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 239100 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 550 erate 0.0651 score 514.19 - absdiff 5595.45 percdiff 168.9488 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 245018 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1770 erate 0.0664 score 1652.47 - absdiff 3579.38 percdiff 103.9864 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 277944 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1587 erate 0.0311 score 1537.64 - absdiff 4572.00 percdiff 119.5718 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 277945 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1586 erate 0.0335 score 1532.87 - absdiff 4576.78 percdiff 119.7715 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 371033 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 3036 erate 0.0442 score 2901.81 - absdiff 2330.04 percdiff 57.2938 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 371035 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 3031 erate 0.0438 score 2898.24 - absdiff 2333.61 percdiff 57.4067 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 461692 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1817 erate 0.0529 score 1720.88 - absdiff 3510.97 percdiff 100.9954 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 474885 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 980 erate 0.0554 score 925.71 - absdiff 4306.14 percdiff 139.8653 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 479938 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2853 erate 0.0428 score 2730.89 - absdiff 2500.96 percdiff 62.8165 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 545822 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1957 erate 0.0506 score 1857.98 - absdiff 3373.88 percdiff 95.1751 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 545826 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1947 erate 0.0484 score 1852.77 - absdiff 3379.09 percdiff 95.3922 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 587506 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1881 erate 0.0495 score 1787.89 - absdiff 4321.75 percdiff 109.4456 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 587509 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1890 erate 0.0449 score 1805.14 - absdiff 4304.51 percdiff 108.7713 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 652603 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2198 erate 0.0628 score 2059.97 - absdiff 3171.89 percdiff 86.9985 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 671152 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1898 erate 0.0459 score 1810.88 - absdiff 4298.76 percdiff 108.5474 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 714801 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2655 erate 0.0633 score 2486.94 - absdiff 2744.91 percdiff 71.1229 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 9995 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1806 erate 0.0438 score 1726.90 - absdiff 1029.97 percdiff 45.9421 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 10484 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 706 erate 0.0313 score 683.90 - absdiff 2072.96 percdiff 120.4942 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 27942 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2127 erate 0.0315 score 2060.00 - absdiff 696.86 percdiff 28.9344 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 39091 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1017 erate 0.0639 score 952.01 - absdiff 6835.25 percdiff 156.4260 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 60396 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2645 erate 0.0616 score 2482.07 - absdiff 5305.20 percdiff 103.3212 tig 284 read 350509 pos 23475-31590 NOT confused by 3' edge to read 82739 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 572 erate 0.0402 score 549.01 - absdiff 2207.86 percdiff 133.5720 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 89750 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1091 erate 0.0446 score 1042.34 - absdiff 6744.92 percdiff 152.7797 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 119517 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2288 erate 0.0367 score 2204.03 - absdiff 552.83 percdiff 22.2877 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 196030 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2152 erate 0.0417 score 2062.26 - absdiff 5725.00 percdiff 116.2493 tig 284 read 350509 pos 23475-31590 NOT confused by 3' edge to read 220169 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 533 erate 0.0592 score 501.45 - absdiff 2255.42 percdiff 138.4409 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 245018 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1289 erate 0.0551 score 1217.98 - absdiff 6569.29 percdiff 145.8992 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 268941 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2051 erate 0.0397 score 1969.58 - absdiff 787.29 percdiff 33.3142 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 323974 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2023 erate 0.0420 score 1938.03 - absdiff 818.83 percdiff 34.8817 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 323976 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2081 erate 0.0380 score 2001.92 - absdiff 754.94 percdiff 31.7283 tig 284 read 350509 pos 23475-31590 NOT confused by 3' edge to read 342903 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 544 erate 0.0733 score 504.12 - absdiff 2252.74 percdiff 138.1630 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 353956 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1992 erate 0.0390 score 1914.31 - absdiff 842.55 percdiff 36.0745 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 353957 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1463 erate 0.0458 score 1395.99 - absdiff 1360.87 percdiff 65.5389 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 371033 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2553 erate 0.0292 score 2478.45 - absdiff 5308.81 percdiff 103.4280 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 371035 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2548 erate 0.0302 score 2471.05 - absdiff 5316.21 percdiff 103.6469 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 394710 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1737 erate 0.0564 score 1639.03 - absdiff 6148.23 percdiff 130.4485 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 429277 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2289 erate 0.0378 score 2202.48 - absdiff 554.39 percdiff 22.3573 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 453691 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1536 erate 0.0485 score 1461.50 - absdiff 1295.36 percdiff 61.4152 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 461692 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1335 erate 0.0427 score 1278.00 - absdiff 6509.27 percdiff 143.6091 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 479938 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2372 erate 0.0316 score 2297.04 - absdiff 5490.22 percdiff 108.8864 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 502457 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1908 erate 0.0383 score 1834.92 - absdiff 921.94 percdiff 40.1561 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 544929 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2040 erate 0.0515 score 1934.94 - absdiff 821.92 percdiff 35.0366 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 545822 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1475 erate 0.0407 score 1414.97 - absdiff 6372.30 percdiff 138.4946 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 545826 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1465 erate 0.0348 score 1414.02 - absdiff 6373.25 percdiff 138.5295 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 582995 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2289 erate 0.0625 score 2145.94 - absdiff 610.93 percdiff 24.9215 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 596060 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 947 erate 0.0222 score 925.98 - absdiff 1830.89 percdiff 99.4280 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 623107 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 809 erate 0.0530 score 766.12 - absdiff 7021.14 percdiff 164.1722 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 638060 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 738 erate 0.0407 score 707.96 - absdiff 2048.90 percdiff 118.2686 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 652603 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1716 erate 0.0451 score 1638.61 - absdiff 6148.66 percdiff 130.4634 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 698389 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 963 erate 0.0343 score 929.97 - absdiff 1826.89 percdiff 99.1037 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 698390 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 971 erate 0.0227 score 948.96 - absdiff 1807.91 percdiff 97.5711 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 699255 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 532 erate 0.0733 score 493.00 - absdiff 7294.26 percdiff 176.1841 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 714801 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2175 erate 0.0533 score 2059.07 - absdiff 5728.19 percdiff 116.3517 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 9995 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1775 erate 0.0536 score 1679.86 - absdiff 6081.84 percdiff 128.8313 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 10484 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 672 erate 0.0492 score 638.94 - absdiff 7122.76 percdiff 169.5767 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 27942 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2095 erate 0.0430 score 2004.91 - absdiff 5756.79 percdiff 117.8870 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 39091 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1029 erate 0.0651 score 962.01 - absdiff 5118.17 percdiff 145.3572 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 60396 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2650 erate 0.0664 score 2474.04 - absdiff 3606.14 percdiff 84.3126 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 82739 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 538 erate 0.0633 score 503.94 - absdiff 7257.76 percdiff 175.6126 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 89750 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1102 erate 0.0439 score 1053.62 - absdiff 5026.56 percdiff 140.9223 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 119517 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2254 erate 0.0462 score 2149.87 - absdiff 5611.84 percdiff 113.2381 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 196030 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2158 erate 0.0474 score 2055.71 - absdiff 4024.47 percdiff 98.9313 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 245018 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1300 erate 0.0638 score 1217.06 - absdiff 4863.12 percdiff 133.2866 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 268941 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2021 erate 0.0515 score 1916.92 - absdiff 5844.78 percdiff 120.7772 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 323974 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1992 erate 0.0512 score 1890.01 - absdiff 5871.69 percdiff 121.6715 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 323976 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2051 erate 0.0468 score 1955.01 - absdiff 5806.69 percdiff 119.5196 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 342903 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 512 erate 0.0705 score 475.90 - absdiff 7285.80 percdiff 176.8912 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 353956 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1961 erate 0.0507 score 1861.58 - absdiff 5900.12 percdiff 122.6219 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 353957 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1431 erate 0.0571 score 1349.29 - absdiff 6412.41 percdiff 140.7621 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 371033 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2558 erate 0.0361 score 2465.66 - absdiff 3614.52 percdiff 84.5915 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 371035 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2553 erate 0.0328 score 2469.26 - absdiff 3610.92 percdiff 84.4715 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 394710 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1746 erate 0.0578 score 1645.08 - absdiff 4435.10 percdiff 114.8207 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 429277 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2255 erate 0.0479 score 2146.99 - absdiff 5614.72 percdiff 113.3292 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 453691 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1504 erate 0.0593 score 1414.81 - absdiff 6346.89 percdiff 138.3290 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 461692 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1346 erate 0.0481 score 1281.26 - absdiff 4798.92 percdiff 130.3801 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 479938 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2375 erate 0.0400 score 2280.00 - absdiff 3800.18 percdiff 90.9115 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 502457 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1877 erate 0.0480 score 1786.90 - absdiff 5974.80 percdiff 125.1449 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 544929 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2009 erate 0.0623 score 1883.84 - absdiff 5877.86 percdiff 121.8773 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 545822 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1485 erate 0.0471 score 1415.06 - absdiff 4665.12 percdiff 124.4824 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 545826 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1475 erate 0.0407 score 1414.97 - absdiff 4665.21 percdiff 124.4862 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 582995 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2255 erate 0.0692 score 2098.95 - absdiff 5662.75 percdiff 114.8554 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 596060 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 913 erate 0.0384 score 877.94 - absdiff 6883.76 percdiff 159.3529 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 623107 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 821 erate 0.0543 score 776.42 - absdiff 5303.76 percdiff 154.7053 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 652603 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1725 erate 0.0499 score 1638.92 - absdiff 4441.26 percdiff 115.0719 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 698389 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 929 erate 0.0506 score 881.99 - absdiff 6879.71 percdiff 159.1845 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 698390 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 937 erate 0.0395 score 899.99 - absdiff 6861.71 percdiff 158.4382 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 699255 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 548 erate 0.0712 score 508.98 - absdiff 5571.20 percdiff 169.1019 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 714801 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2181 erate 0.0601 score 2049.92 - absdiff 4030.26 percdiff 99.1441 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 9995 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1788 erate 0.0560 score 1687.87 - absdiff 6068.04 percdiff 128.5086 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 10484 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 690 erate 0.0420 score 661.02 - absdiff 7094.89 percdiff 168.5862 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 27942 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2113 erate 0.0436 score 2020.87 - absdiff 5735.04 percdiff 117.3195 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 39091 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1030 erate 0.0612 score 966.96 - absdiff 6800.63 percdiff 155.7178 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 60396 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2647 erate 0.0688 score 2464.89 - absdiff 5302.70 percdiff 103.6446 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 82739 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 556 erate 0.0594 score 522.97 - absdiff 7232.93 percdiff 174.7322 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 89750 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1103 erate 0.0439 score 1054.58 - absdiff 6713.01 percdiff 152.1851 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 119517 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2276 erate 0.0475 score 2167.89 - absdiff 5588.02 percdiff 112.6185 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 196030 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2153 erate 0.0479 score 2049.87 - absdiff 5717.72 percdiff 116.4806 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 245018 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1298 erate 0.0640 score 1214.93 - absdiff 6552.66 percdiff 145.8981 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 268941 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2037 erate 0.0492 score 1936.78 - absdiff 5819.13 percdiff 120.0726 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 323974 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2007 erate 0.0509 score 1904.84 - absdiff 5851.06 percdiff 121.1306 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 323976 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2067 erate 0.0484 score 1966.96 - absdiff 5788.95 percdiff 119.0791 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 353956 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1976 erate 0.0518 score 1873.64 - absdiff 5882.27 percdiff 122.1711 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 353957 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1445 erate 0.0584 score 1360.61 - absdiff 6395.30 percdiff 140.3013 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 371033 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2555 erate 0.0365 score 2461.74 - absdiff 5305.85 percdiff 103.7379 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 371035 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2550 erate 0.0360 score 2458.20 - absdiff 5309.39 percdiff 103.8431 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 394710 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1743 erate 0.0597 score 1638.94 - absdiff 6128.65 percdiff 130.3062 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 429277 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2277 erate 0.0480 score 2167.70 - absdiff 5588.20 percdiff 112.6244 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 461692 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1343 erate 0.0444 score 1283.37 - absdiff 6484.22 percdiff 143.2825 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 479938 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2373 erate 0.0380 score 2282.83 - absdiff 5484.77 percdiff 109.1450 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 502457 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1892 erate 0.0492 score 1798.91 - absdiff 5956.99 percdiff 124.6909 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 544929 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2024 erate 0.0609 score 1900.74 - absdiff 5855.17 percdiff 121.2671 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 545822 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1482 erate 0.0459 score 1413.98 - absdiff 6353.61 percdiff 138.3994 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 545826 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1472 erate 0.0401 score 1412.97 - absdiff 6354.62 percdiff 138.4363 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 582995 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2277 erate 0.0720 score 2113.06 - absdiff 5642.85 percdiff 114.3555 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 596060 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 931 erate 0.0376 score 895.99 - absdiff 6859.91 percdiff 158.5758 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 623107 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 821 erate 0.0532 score 777.32 - absdiff 6990.27 percdiff 163.6124 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 638060 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 722 erate 0.0485 score 686.98 - absdiff 7068.93 percdiff 167.4527 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 643799 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1154 erate 0.0707 score 1072.41 - absdiff 6695.18 percdiff 151.4746 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 652603 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1722 erate 0.0453 score 1643.99 - absdiff 6123.60 percdiff 130.1289 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 698389 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 947 erate 0.0444 score 904.95 - absdiff 6850.96 percdiff 158.2049 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 698390 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 956 erate 0.0346 score 922.92 - absdiff 6832.99 percdiff 157.4633 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 699255 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 547 erate 0.0678 score 509.91 - absdiff 7257.68 percdiff 175.3591 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 714801 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2176 erate 0.0612 score 2042.83 - absdiff 5724.76 percdiff 116.7078 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 371033 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 727 erate 0.0348 score 701.70 - absdiff 2314.35 percdiff 124.5027 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 371035 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 722 erate 0.0396 score 693.41 - absdiff 2322.64 percdiff 125.2280 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 479938 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 544 erate 0.0404 score 522.02 - absdiff 2494.03 percdiff 140.9823 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 530119 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 592 erate 0.0642 score 553.99 - absdiff 2462.06 percdiff 137.9286 saved region 19547:33053 - 22 best edges are potentially confused break tig 284 into up to 2 pieces: 0 19047 unique (length 19047) 19047 33053 repeat (length 14006) Creating Unitig 113195 Creating Unitig 113196 For tig 284 unique region 0 19047 - 0/ 42 reads repeat/unique - unitig 113195 created. For tig 284 repeat region 19047 33053 - 256/ 0 reads repeat/unique - unitig 113196 created. Annotating repeats in reads for tig 286/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 14374:15890 - contained in read 61077 9214- 16410 discard region 25242:29959 - contained in read 126182 20237- 34127 discard region 31035:32068 - contained in read 126182 20237- 34127 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 288/113047. Annotated with 1405 overlaps. Scan reads to discard spanned repeats. discard region 64:1388 - contained in read 133468 0- 5796 discard region 1368:4179 - contained in read 133468 0- 5796 thickest edges to the repeat regions: saved region 4469:24485 - closest 5' read 429969 ( +4405) 64:9588 (-14897) saved region 4469:24485 - closest 3' read 103476 (-10158) 14627:24485 ( +0) search for confused edges: tig 288 read 429969 pos 64-9588 NOT confused by 5' edge to read 283236 - best edge read 78266 len 4984 erate 0.0394 score 4787.63 - alt edge len 2260 erate 0.0627 score 2118.30 - absdiff 2669.33 percdiff 77.3055 tig 288 read 429969 pos 64-9588 NOT confused by 5' edge to read 578688 - best edge read 78266 len 4984 erate 0.0394 score 4787.63 - alt edge len 1364 erate 0.0450 score 1302.62 - absdiff 3485.01 percdiff 114.4456 tig 288 read 429969 pos 64-9588 NOT confused by 5' edge to read 578689 - best edge read 78266 len 4984 erate 0.0394 score 4787.63 - alt edge len 1365 erate 0.0398 score 1310.67 - absdiff 3476.96 percdiff 114.0303 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 36467 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1030 erate 0.0408 score 987.98 - absdiff 7174.86 percdiff 156.8136 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 78265 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1697 erate 0.0407 score 1627.93 - absdiff 6534.90 percdiff 133.4911 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 118971 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 3341 erate 0.0390 score 3210.70 - absdiff 4952.13 percdiff 87.0817 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 295488 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1570 erate 0.0617 score 1473.13 - absdiff 6689.70 percdiff 138.8486 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 377979 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1118 erate 0.0493 score 1062.88 - absdiff 7099.95 percdiff 153.9165 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 483829 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1040 erate 0.0725 score 964.60 - absdiff 7198.23 percdiff 157.7274 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 483830 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1047 erate 0.0704 score 973.29 - absdiff 7189.54 percdiff 157.3871 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 505572 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 792 erate 0.0506 score 751.92 - absdiff 7410.91 percdiff 166.2616 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 505574 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1095 erate 0.0429 score 1048.02 - absdiff 7114.81 percdiff 154.4874 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 621497 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1084 erate 0.0710 score 1007.04 - absdiff 7155.80 percdiff 156.0720 tig 288 read 78266 pos 4603-13366 NOT confused by 5' edge to read 625532 - best edge read 429969 len 5010 erate 0.0394 score 4812.61 - alt edge len 2146 erate 0.0469 score 2045.35 - absdiff 2767.25 percdiff 80.7020 tig 288 read 78266 pos 4603-13366 NOT confused by 5' edge to read 625533 - best edge read 429969 len 5010 erate 0.0394 score 4812.61 - alt edge len 2134 erate 0.0394 score 2049.92 - absdiff 2762.69 percdiff 80.5151 tig 288 read 78266 pos 4603-13366 NOT confused by 5' edge to read 625534 - best edge read 429969 len 5010 erate 0.0394 score 4812.61 - alt edge len 2158 erate 0.0392 score 2073.41 - absdiff 2739.20 percdiff 79.5584 tig 288 read 465819 pos 4767-13977 NOT confused by 3' edge to read 78265 - best edge read 546499 len 8452 erate 0.0492 score 8036.16 - alt edge len 2428 erate 0.0461 score 2316.07 - absdiff 5720.09 percdiff 110.5094 tig 288 read 465819 pos 4767-13977 NOT confused by 3' edge to read 295488 - best edge read 546499 len 8452 erate 0.0492 score 8036.16 - alt edge len 2299 erate 0.0693 score 2139.68 - absdiff 5896.48 percdiff 115.8918 tig 288 read 465819 pos 4767-13977 NOT confused by 3' edge to read 621498 - best edge read 546499 len 8452 erate 0.0492 score 8036.16 - alt edge len 1822 erate 0.0585 score 1715.41 - absdiff 6320.75 percdiff 129.6354 tig 288 read 465819 pos 4767-13977 NOT confused by 5' edge to read 625532 - best edge read 78266 len 8357 erate 0.0230 score 8164.79 - alt edge len 1852 erate 0.0530 score 1753.84 - absdiff 6410.94 percdiff 129.2707 tig 288 read 465819 pos 4767-13977 NOT confused by 5' edge to read 625533 - best edge read 78266 len 8357 erate 0.0230 score 8164.79 - alt edge len 1840 erate 0.0460 score 1755.36 - absdiff 6409.43 percdiff 129.2204 tig 288 read 465819 pos 4767-13977 NOT confused by 5' edge to read 625534 - best edge read 78266 len 8357 erate 0.0230 score 8164.79 - alt edge len 1864 erate 0.0463 score 1777.70 - absdiff 6387.09 percdiff 128.4808 tig 288 read 546499 pos 5370-21719 NOT confused by 5' edge to read 240660 - best edge read 465819 len 8386 erate 0.0492 score 7973.41 - alt edge len 771 erate 0.0615 score 723.58 - absdiff 7249.83 percdiff 166.7203 tig 288 read 546499 pos 5370-21719 NOT confused by 5' edge to read 625533 - best edge read 465819 len 8386 erate 0.0492 score 7973.41 - alt edge len 1195 erate 0.0573 score 1126.53 - absdiff 6846.88 percdiff 150.4820 tig 288 read 546499 pos 5370-21719 NOT confused by 5' edge to read 625534 - best edge read 465819 len 8386 erate 0.0492 score 7973.41 - alt edge len 1219 erate 0.0530 score 1154.39 - absdiff 6819.02 percdiff 149.4120 discard region 4469:24485 - no confusion in best edges Annotating repeats in reads for tig 291/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6198:8152 - closest read 520566 ( +1190) 5008:8152 ( +0) (contained) saved region 6198:8152 - closest read 691602 ( +0) 6198:12371 ( +4219) (contained) saved region 6198:8152 - closest 5' read 691602 ( +0) 6198:12371 ( +4219) saved region 6198:8152 - closest 3' read 520566 ( +1190) 5008:8152 ( +0) saved region 18376:29183 - closest 5' read 472337 ( +124) 18252:25680 ( -3503) saved region 18376:29183 - closest 3' read 22634 ( -5341) 23717:29351 ( +168) search for confused edges: discard region 6198:8152 - no confusion in best edges discard region 18376:29183 - no confusion in best edges Annotating repeats in reads for tig 295/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 12651:14656 - contained in read 168292 6760- 14656 thickest edges to the repeat regions: saved region 1234:12688 - closest 5' read 283165 ( +241) 993:9165 ( -3523) saved region 1234:12688 - closest 3' read 127269 ( -3161) 4395:12688 ( +0) search for confused edges: tig 295 read 161697 pos 0-8895 NOT confused by 5' edge to read 452429 - best edge read 487149 len 5281 erate 0.0262 score 5142.64 - alt edge len 1155 erate 0.0334 score 1116.42 - absdiff 4026.21 percdiff 128.6524 tig 295 read 161697 pos 0-8895 NOT confused by 5' edge to read 455545 - best edge read 487149 len 5281 erate 0.0262 score 5142.64 - alt edge len 1566 erate 0.0673 score 1460.61 - absdiff 3682.03 percdiff 111.5218 tig 295 read 153580 pos 1234-8916 NOT confused by 3' edge to read 452429 - best edge read 161697 len 5190 erate 0.0479 score 4941.40 - alt edge len 953 erate 0.0383 score 916.50 - absdiff 4024.90 percdiff 137.4178 tig 295 read 153580 pos 1234-8916 NOT confused by 3' edge to read 455545 - best edge read 161697 len 5190 erate 0.0479 score 4941.40 - alt edge len 1392 erate 0.0566 score 1313.21 - absdiff 3628.19 percdiff 116.0164 tig 295 read 487149 pos 1776-10907 NOT confused by 5' edge to read 452429 - best edge read 588348 len 5138 erate 0.0380 score 4942.76 - alt edge len 1280 erate 0.0515 score 1214.08 - absdiff 3728.68 percdiff 121.1231 tig 295 read 588348 pos 3437-11779 NOT confused by 5' edge to read 452429 - best edge read 588349 len 8117 erate 0.0142 score 8001.74 - alt edge len 1190 erate 0.0448 score 1136.69 - absdiff 6865.05 percdiff 150.2458 tig 295 read 588348 pos 3437-11779 NOT confused by 5' edge to read 455545 - best edge read 588349 len 8117 erate 0.0142 score 8001.74 - alt edge len 1635 erate 0.0439 score 1563.22 - absdiff 6438.52 percdiff 134.6271 tig 295 read 588349 pos 4028-12241 IS confused by 3' edge to read 452429 - best edge read 231616 len 2441 erate 0.0386 score 2346.78 - alt edge len 1271 erate 0.0491 score 1208.59 - absdiff 1138.18 percdiff 64.0261 tig 295 read 588349 pos 4028-12241 IS confused by 3' edge to read 455545 - best edge read 231616 len 2441 erate 0.0386 score 2346.78 - alt edge len 1712 erate 0.0674 score 1596.61 - absdiff 750.17 percdiff 38.0468 saved region 1234:12688 - 2 best edges are potentially confused break tig 295 into up to 3 pieces: 0 734 unique (length 734) 734 13188 repeat (length 12454) 13188 14656 unique (length 1468) Creating Unitig 113197 Creating Unitig 113198 Creating Unitig 113199 For tig 295 unique region 0 734 - 0/ 1 reads repeat/unique - unitig 113197 created. For tig 295 repeat region 734 13188 - 39/ 0 reads repeat/unique - unitig 113198 created. For tig 295 unique region 13188 14656 - 0/ 7 reads repeat/unique - unitig 113199 created. Annotating repeats in reads for tig 296/113047. Annotated with 2281 overlaps. Scan reads to discard spanned repeats. discard region 40313:42040 - contained in read 686300 38329- 43414 thickest edges to the repeat regions: saved region 975:26391 - closest 5' read 160285 ( +975) 0:13119 (-13272) saved region 975:26391 - closest 3' read 167498 (-13419) 14394:26510 ( +119) search for confused edges: tig 296 read 161947 pos 3626-16468 NOT confused by 5' edge to read 113252 - best edge read 703036 len 6149 erate 0.0584 score 5789.90 - alt edge len 1245 erate 0.0582 score 1172.54 - absdiff 4617.36 percdiff 132.6362 tig 296 read 703036 pos 5671-12827 IS confused by 5' edge to read 487585 - best edge read 161947 len 6076 erate 0.0584 score 5721.16 - alt edge len 5740 erate 0.0599 score 5396.17 - absdiff 324.99 percdiff 5.8465 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 516254 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 1837 erate 0.0715 score 1705.65 - absdiff 988.10 percdiff 44.9196 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 606199 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 2783 erate 0.0698 score 2588.75 - absdiff 105.01 percdiff 3.9756 tig 296 read 703036 pos 5671-12827 NOT confused by 5' edge to read 629732 - best edge read 161947 len 6076 erate 0.0584 score 5721.16 - alt edge len 2225 erate 0.0573 score 2097.51 - absdiff 3623.65 percdiff 92.6924 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 682536 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 2686 erate 0.0663 score 2507.92 - absdiff 185.84 percdiff 7.1452 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 716843 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 2164 erate 0.0721 score 2007.98 - absdiff 685.78 percdiff 29.1713 saved region 975:26391 - 5 best edges are potentially confused break tig 296 into up to 3 pieces: 0 475 unique (length 475) 475 26891 repeat (length 26416) 26891 52576 unique (length 25685) Creating Unitig 113200 Creating Unitig 113201 Creating Unitig 113202 For tig 296 unique region 0 475 - 0/ 1 reads repeat/unique - unitig 113200 created. For tig 296 repeat region 475 26891 - 84/ 0 reads repeat/unique - unitig 113201 created. For tig 296 unique region 26891 52576 - 0/ 27 reads repeat/unique - unitig 113202 created. Annotating repeats in reads for tig 297/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 0:5084 - contained in read 383476 0- 8894 discard region 5941:8343 - contained in read 383476 0- 8894 thickest edges to the repeat regions: saved region 11885:21092 - closest 5' read 1003 ( +0) 11885:19919 ( -1173) saved region 11885:21092 - closest 3' read 706345 ( -285) 12170:22056 ( +964) search for confused edges: discard region 11885:21092 - no confusion in best edges Annotating repeats in reads for tig 298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 302/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 0:3182 - contained in read 70938 0- 6802 discard region 4042:5893 - contained in read 70938 0- 6802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 306/113047. Annotated with 291 overlaps. Scan reads to discard spanned repeats. discard region 0:14194 - contained in read 241100 0- 15086 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 309/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 17094:18089 - contained in read 38449 15088- 24870 thickest edges to the repeat regions: saved region 5394:16419 - closest 5' read 395210 ( +91) 5303:10717 ( -5702) saved region 5394:16419 - closest 3' read 93042 ( -3534) 8928:17195 ( +776) search for confused edges: tig 309 read 395210 pos 5303-10717 IS confused by 5' edge to read 571084 - best edge read 299058 len 4802 erate 0.0378 score 4620.48 - alt edge len 4171 erate 0.0173 score 4098.84 - absdiff 521.64 percdiff 11.9652 tig 309 read 395210 pos 5303-10717 IS confused by 5' edge to read 571085 - best edge read 299058 len 4802 erate 0.0378 score 4620.48 - alt edge len 4188 erate 0.0168 score 4117.64 - absdiff 502.84 percdiff 11.5092 saved region 5394:16419 - 2 best edges are potentially confused break tig 309 into up to 3 pieces: 0 4894 unique (length 4894) 4894 16919 repeat (length 12025) 16919 36741 unique (length 19822) Creating Unitig 113203 Creating Unitig 113204 Creating Unitig 113205 For tig 309 unique region 0 4894 - 0/ 4 reads repeat/unique - unitig 113203 created. For tig 309 repeat region 4894 16919 - 29/ 0 reads repeat/unique - unitig 113204 created. For tig 309 unique region 16919 36741 - 0/ 26 reads repeat/unique - unitig 113205 created. Annotating repeats in reads for tig 315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 316/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 32135:34762 - contained in read 319775 29094- 39748 thickest edges to the repeat regions: saved region 22123:25027 - closest read 625928 ( +0) 22123:26224 ( +1197) (contained) saved region 22123:25027 - closest 5' read 625928 ( +0) 22123:26224 ( +1197) saved region 22123:25027 - closest 3' read 625928 ( +0) 22123:26224 ( +1197) search for confused edges: tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 14091 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 1670 erate 0.0496 score 1587.17 - absdiff 806.95 percdiff 40.5370 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 14093 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 1662 erate 0.0474 score 1583.22 - absdiff 810.89 percdiff 40.7757 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 359861 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 2117 erate 0.0423 score 2027.45 - absdiff 366.66 percdiff 16.5853 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 361367 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 586 erate 0.0567 score 552.77 - absdiff 1841.34 percdiff 124.9685 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 403110 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 948 erate 0.0390 score 911.03 - absdiff 1483.09 percdiff 89.7442 tig 316 read 625929 pos 22130-26253 IS confused by 3' edge to read 24832 - best edge read 570964 len 2610 erate 0.0688 score 2430.43 - alt edge len 1543 erate 0.0301 score 1496.56 - absdiff 933.88 percdiff 47.5620 tig 316 read 625929 pos 22130-26253 IS confused by 3' edge to read 436166 - best edge read 570964 len 2610 erate 0.0688 score 2430.43 - alt edge len 1430 erate 0.0253 score 1393.82 - absdiff 1036.61 percdiff 54.2125 saved region 22123:25027 - 7 best edges are potentially confused break tig 316 into up to 3 pieces: 0 21623 unique (length 21623) 21623 25527 repeat (length 3904) 25527 39748 unique (length 14221) Creating Unitig 113206 Creating Unitig 113207 For tig 316 unique region 0 21623 - 0/ 37 reads repeat/unique - unitig 113206 created. For tig 316 repeat region 21623 25527 - 0/ 0 repeat/unique reads - no new unitig created. For tig 316 unique region 25527 39748 - 0/ 14 reads repeat/unique - unitig 113207 created. Annotating repeats in reads for tig 320/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4329 - closest 5' read 595709 ( +0) 0:3963 ( -366) saved region 0:4329 - closest 3' read 317143 ( -208) 208:6668 ( +2339) search for confused edges: tig 320 read 317143 pos 208-6668 IS confused by 5' edge to read 223206 - best edge read 595709 len 3759 erate 0.0606 score 3531.20 - alt edge len 1691 erate 0.0596 score 1590.22 - absdiff 1940.99 percdiff 75.7988 tig 320 read 317143 pos 208-6668 IS confused by 5' edge to read 313926 - best edge read 595709 len 3759 erate 0.0606 score 3531.20 - alt edge len 2390 erate 0.0493 score 2272.17 - absdiff 1259.03 percdiff 43.3896 tig 320 read 317143 pos 208-6668 IS confused by 5' edge to read 514260 - best edge read 595709 len 3759 erate 0.0606 score 3531.20 - alt edge len 2664 erate 0.0563 score 2514.02 - absdiff 1017.19 percdiff 33.6526 saved region 0:4329 - 3 best edges are potentially confused break tig 320 into up to 2 pieces: 0 4829 repeat (length 4829) 4829 6668 unique (length 1839) Creating Unitig 113208 Creating Unitig 113209 For tig 320 repeat region 0 4829 - 3/ 0 reads repeat/unique - unitig 113208 created. For tig 320 unique region 4829 6668 - 0/ 3 reads repeat/unique - unitig 113209 created. Annotating repeats in reads for tig 323/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 16032:16910 - contained in read 652270 233- 18124 thickest edges to the repeat regions: saved region 32499:40297 - closest read 121753 ( +0) 32499:40513 ( +216) (contained) saved region 32499:40297 - closest 5' read 121753 ( +0) 32499:40513 ( +216) saved region 32499:40297 - closest 3' read 121753 ( +0) 32499:40513 ( +216) search for confused edges: discard region 32499:40297 - no confusion in best edges Annotating repeats in reads for tig 325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 326/113047. Annotated with 87 overlaps. Scan reads to discard spanned repeats. discard region 5038:6483 - contained in read 539031 2075- 9275 thickest edges to the repeat regions: saved region 9884:15648 - closest 5' read 504526 ( +5240) 4644:12250 ( -3398) saved region 9884:15648 - closest 3' read 561831 ( -1149) 11033:17366 ( +1718) search for confused edges: tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 284754 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 911 erate 0.0378 score 876.56 - absdiff 201.15 percdiff 20.5852 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 284755 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 910 erate 0.0424 score 871.42 - absdiff 206.29 percdiff 21.1678 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 284756 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 894 erate 0.0351 score 862.62 - absdiff 215.09 percdiff 22.1704 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 586259 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 699 erate 0.0392 score 671.60 - absdiff 406.11 percdiff 46.4310 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 588403 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 981 erate 0.0361 score 945.59 - absdiff 132.12 percdiff 13.0602 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 588404 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 985 erate 0.0415 score 944.12 - absdiff 133.59 percdiff 13.2145 saved region 9884:15648 - 6 best edges are potentially confused break tig 326 into up to 3 pieces: 0 9384 unique (length 9384) 9384 16148 repeat (length 6764) 16148 37679 unique (length 21531) Creating Unitig 113210 Creating Unitig 113211 Creating Unitig 113212 For tig 326 unique region 0 9384 - 0/ 12 reads repeat/unique - unitig 113210 created. For tig 326 repeat region 9384 16148 - 3/ 0 reads repeat/unique - unitig 113212 created. For tig 326 unique region 16148 37679 - 0/ 42 reads repeat/unique - unitig 113211 created. Annotating repeats in reads for tig 328/113047. Annotated with 616 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:20443 - closest 5' read 330139 ( +0) 0:8426 (-12017) saved region 0:20443 - closest 3' read 571983 (-12545) 12545:20443 ( +0) search for confused edges: tig 328 read 352587 pos 1875-14314 NOT confused by 3' edge to read 503548 - best edge read 609233 len 10251 erate 0.0578 score 9658.49 - alt edge len 7512 erate 0.0574 score 7080.81 - absdiff 2577.68 percdiff 30.7979 tig 328 read 352587 pos 1875-14314 NOT confused by 3' edge to read 503549 - best edge read 609233 len 10251 erate 0.0578 score 9658.49 - alt edge len 7518 erate 0.0589 score 7075.19 - absdiff 2583.30 percdiff 30.8755 tig 328 read 609233 pos 2127-14737 NOT confused by 3' edge to read 140436 - best edge read 352587 len 10289 erate 0.0576 score 9696.35 - alt edge len 3623 erate 0.0687 score 3374.10 - absdiff 6322.25 percdiff 96.7412 tig 328 read 609233 pos 2127-14737 NOT confused by 3' edge to read 699198 - best edge read 352587 len 10289 erate 0.0576 score 9696.35 - alt edge len 7764 erate 0.0411 score 7444.90 - absdiff 2251.45 percdiff 26.2694 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 140436 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 2054 erate 0.0518 score 1947.60 - absdiff 4737.64 percdiff 109.7585 tig 328 read 404627 pos 6494-16176 IS confused by 3' edge to read 558385 - best edge read 571983 len 3269 erate 0.0432 score 3127.78 - alt edge len 1532 erate 0.0542 score 1448.97 - absdiff 1678.81 percdiff 73.3628 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 669557 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 2243 erate 0.0532 score 2123.67 - absdiff 4561.57 percdiff 103.5672 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 669560 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 1911 erate 0.0556 score 1804.75 - absdiff 4880.50 percdiff 114.9706 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 699198 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 2264 erate 0.0469 score 2157.82 - absdiff 4527.43 percdiff 102.3950 saved region 0:20443 - 1 best edges are potentially confused Annotating repeats in reads for tig 334/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 5255:13607 - contained in read 122130 53- 13607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 341/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 345/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 25388:26478 - contained in read 556498 19443- 27254 discard region 28979:33165 - contained in read 37825 21778- 34670 discard region 38615:41395 - contained in read 609867 34960- 41395 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 353/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16927:21950 - closest 5' read 522438 ( +0) 16927:21829 ( -121) saved region 16927:21950 - closest 3' read 673661 ( -6) 16933:22570 ( +620) search for confused edges: discard region 16927:21950 - no confusion in best edges Annotating repeats in reads for tig 359/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 19517:17406 - contained in read 702701 8965- 19135 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 361/113047. Annotated with 212 overlaps. Scan reads to discard spanned repeats. discard region 6893:6315 - contained in read 590367 0- 8221 thickest edges to the repeat regions: saved region 6994:8417 - closest read 343861 ( +679) 6315:8421 ( +4) (contained) saved region 6994:8417 - closest read 203613 ( +672) 6322:8417 ( +0) (contained) saved region 6994:8417 - closest 5' read 343861 ( +679) 6315:8421 ( +4) saved region 6994:8417 - closest 3' read 343861 ( +679) 6315:8421 ( +4) saved region 12580:20808 - closest 5' read 122124 ( +2043) 10537:16880 ( -3928) saved region 12580:20808 - closest 3' read 485576 ( -4709) 17289:20956 ( +148) saved region 22933:25866 - closest read 44153 ( +4444) 18489:25866 ( +0) (contained) saved region 22933:25866 - closest 5' read 44153 ( +4444) 18489:25866 ( +0) saved region 22933:25866 - closest 3' read 44153 ( +4444) 18489:25866 ( +0) saved region 33632:35165 - closest 5' read 355212 ( +8334) 25298:34688 ( -477) saved region 33632:35165 - closest 3' read 9850 ( -50) 33682:41108 ( +5943) saved region 39712:41079 - closest read 9850 ( +6030) 33682:41108 ( +29) (contained) saved region 39712:41079 - closest read 9848 ( +6029) 33683:41084 ( +5) (contained) saved region 39712:41079 - closest read 9852 ( +6027) 33685:41104 ( +25) (contained) saved region 39712:41079 - closest read 9847 ( +6026) 33686:41103 ( +24) (contained) saved region 39712:41079 - closest read 9851 ( +6020) 33692:41106 ( +27) (contained) saved region 39712:41079 - closest read 9849 ( +6017) 33695:41093 ( +14) (contained) saved region 39712:41079 - closest read 594412 ( +0) 39712:44104 ( +3025) (contained) saved region 39712:41079 - closest 5' read 594412 ( +0) 39712:44104 ( +3025) saved region 39712:41079 - closest 3' read 9850 ( +6030) 33682:41108 ( +29) search for confused edges: tig 361 read 122124 pos 10537-16880 IS confused by 3' edge to read 78703 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 3129 erate 0.0275 score 3042.95 - absdiff 23.20 percdiff 0.7595 tig 361 read 122124 pos 10537-16880 IS confused by 3' edge to read 172901 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 3040 erate 0.0385 score 2922.96 - absdiff 143.19 percdiff 4.7817 tig 361 read 122124 pos 10537-16880 NOT confused by 3' edge to read 488628 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 641 erate 0.0362 score 617.80 - absdiff 2448.36 percdiff 132.9202 tig 361 read 122124 pos 10537-16880 NOT confused by 3' edge to read 488632 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 632 erate 0.0459 score 602.99 - absdiff 2463.16 percdiff 134.2635 tig 361 read 122124 pos 10537-16880 IS confused by 3' edge to read 677507 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 2905 erate 0.0276 score 2824.82 - absdiff 241.33 percdiff 8.1932 tig 361 read 284783 pos 13729-19275 IS confused by 5' edge to read 321138 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 1532 erate 0.0535 score 1450.04 - absdiff 1610.27 percdiff 71.4034 tig 361 read 284783 pos 13729-19275 IS confused by 5' edge to read 335569 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 1533 erate 0.0506 score 1455.43 - absdiff 1604.88 percdiff 71.0793 tig 361 read 284783 pos 13729-19275 NOT confused by 5' edge to read 508440 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 745 erate 0.0650 score 696.58 - absdiff 2363.73 percdiff 125.8348 tig 361 read 284783 pos 13729-19275 NOT confused by 5' edge to read 568570 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 520 erate 0.0603 score 488.64 - absdiff 2571.66 percdiff 144.9253 tig 361 read 355212 pos 25298-34688 IS confused by 5' edge to read 72110 - best edge read 9852 len 999 erate 0.0513 score 947.75 - alt edge len 799 erate 0.0626 score 748.98 - absdiff 198.77 percdiff 23.4296 discard region 6994:8417 - no confusion in best edges saved region 12580:20808 - 5 best edges are potentially confused discard region 22933:25866 - no confusion in best edges saved region 33632:35165 - 1 best edges are potentially confused discard region 39712:41079 - no confusion in best edges break tig 361 into up to 5 pieces: 0 12080 unique (length 12080) 12080 21308 repeat (length 9228) 21308 33132 unique (length 11824) 33132 35665 repeat (length 2533) 35665 44104 unique (length 8439) Creating Unitig 113213 Creating Unitig 113214 Creating Unitig 113215 Creating Unitig 113216 Creating Unitig 113217 For tig 361 unique region 0 12080 - 0/ 22 reads repeat/unique - unitig 113213 created. For tig 361 repeat region 12080 21308 - 6/ 0 reads repeat/unique - unitig 113214 created. For tig 361 unique region 21308 33132 - 0/ 30 reads repeat/unique - unitig 113215 created. For tig 361 repeat region 33132 35665 - 1/ 0 reads repeat/unique - unitig 113217 created. For tig 361 unique region 35665 44104 - 0/ 8 reads repeat/unique - unitig 113216 created. Annotating repeats in reads for tig 362/113047. Annotated with 108 overlaps. Scan reads to discard spanned repeats. discard region 0:7110 - contained in read 719569 0- 11752 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 365/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 9926:10837 - contained in read 666954 9311- 15214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 367/113047. Annotated with 1581 overlaps. Scan reads to discard spanned repeats. discard region 861:231 - contained in read 53636 0- 5976 thickest edges to the repeat regions: saved region 12898:18882 - closest read 540389 ( +388) 12510:20005 ( +1123) (contained) saved region 12898:18882 - closest 5' read 540389 ( +388) 12510:20005 ( +1123) saved region 12898:18882 - closest 3' read 540389 ( +388) 12510:20005 ( +1123) saved region 28255:38036 - closest 5' read 140159 ( +967) 27288:33121 ( -4915) saved region 28255:38036 - closest 3' read 348202 ( -1135) 29390:38036 ( +0) search for confused edges: tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 102943 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 3572 erate 0.0370 score 3439.84 - absdiff 2746.81 percdiff 57.0678 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 318714 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 3282 erate 0.0277 score 3191.09 - absdiff 2995.56 percdiff 63.8866 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 361822 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 916 erate 0.0612 score 859.94 - absdiff 5326.71 percdiff 151.1854 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 361823 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 917 erate 0.0546 score 866.93 - absdiff 5319.72 percdiff 150.8373 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 373854 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 1391 erate 0.0568 score 1311.99 - absdiff 4874.66 percdiff 130.0144 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 503811 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2616 erate 0.0551 score 2471.86 - absdiff 3714.79 percdiff 85.8067 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 503812 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2603 erate 0.0626 score 2440.05 - absdiff 3746.60 percdiff 86.8605 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 532025 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 1158 erate 0.0467 score 1103.92 - absdiff 5082.73 percdiff 139.4329 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 563801 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2223 erate 0.0396 score 2134.97 - absdiff 4051.68 percdiff 97.3772 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 588149 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 1324 erate 0.0710 score 1230.00 - absdiff 4956.65 percdiff 133.6629 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 653095 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2819 erate 0.0372 score 2714.13 - absdiff 3472.51 percdiff 78.0272 discard region 12898:18882 - no confusion in best edges discard region 28255:38036 - no confusion in best edges Annotating repeats in reads for tig 369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 370/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 19962:21238 - contained in read 526294 18297- 26608 discard region 22865:24154 - contained in read 526294 18297- 26608 discard region 24999:30330 - contained in read 526295 20157- 31920 discard region 33341:35672 - contained in read 705432 29673- 37721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 371/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4811:1434 - contained in read 74210 0- 8097 discard region 6131:3509 - contained in read 74210 0- 8097 discard region 6954:5431 - contained in read 74210 0- 8097 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 372/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3080:4295 - contained in read 78207 0- 6291 thickest edges to the repeat regions: saved region 48900:49742 - closest read 284029 ( +5205) 43695:49742 ( +0) (contained) saved region 48900:49742 - closest read 523515 ( +102) 48798:55611 ( +5869) (contained) saved region 48900:49742 - closest 5' read 523515 ( +102) 48798:55611 ( +5869) saved region 48900:49742 - closest 3' read 284029 ( +5205) 43695:49742 ( +0) search for confused edges: discard region 48900:49742 - no confusion in best edges Annotating repeats in reads for tig 375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 376/113047. Annotated with 1363 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:13080 - closest 5' read 510904 ( +0) 0:5732 ( -7348) saved region 0:13080 - closest 3' read 571856 ( -5777) 5777:13080 ( +0) search for confused edges: tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 9364 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1327 erate 0.0590 score 1248.71 - absdiff 4965.07 percdiff 133.0675 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 140414 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 2498 erate 0.0569 score 2355.86 - absdiff 3857.91 percdiff 90.0367 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 140415 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 2497 erate 0.0549 score 2359.91 - absdiff 3853.86 percdiff 89.8997 tig 376 read 682536 pos 1478-9844 IS confused by 3' edge to read 230528 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 4510 erate 0.0570 score 4252.93 - absdiff 1960.84 percdiff 37.4682 tig 376 read 682536 pos 1478-9844 IS confused by 3' edge to read 230529 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 4745 erate 0.0492 score 4511.55 - absdiff 1702.23 percdiff 31.7422 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 481664 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1867 erate 0.0648 score 1746.02 - absdiff 4467.76 percdiff 112.2581 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 550898 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1391 erate 0.0690 score 1295.02 - absdiff 4918.75 percdiff 131.0131 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 595206 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1454 erate 0.0625 score 1363.12 - absdiff 4850.65 percdiff 128.0378 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 703036 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 2691 erate 0.0663 score 2512.59 - absdiff 3701.19 percdiff 84.8277 tig 376 read 110652 pos 2163-11006 IS confused by 5' edge to read 40822 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 4844 erate 0.0663 score 4522.84 - absdiff 1730.15 percdiff 32.1116 tig 376 read 110652 pos 2163-11006 IS confused by 5' edge to read 113252 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 6223 erate 0.0667 score 5807.93 - absdiff 445.06 percdiff 7.3803 tig 376 read 110652 pos 2163-11006 NOT confused by 5' edge to read 140414 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 880 erate 0.0441 score 841.19 - absdiff 5411.80 percdiff 152.5700 tig 376 read 110652 pos 2163-11006 NOT confused by 5' edge to read 140415 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 893 erate 0.0493 score 848.98 - absdiff 5404.01 percdiff 152.1836 tig 376 read 629732 pos 4856-12200 NOT confused by 3' edge to read 638612 - best edge read 621144 len 4488 erate 0.0398 score 4309.38 - alt edge len 2162 erate 0.0664 score 2018.44 - absdiff 2290.93 percdiff 72.4083 tig 376 read 629732 pos 4856-12200 NOT confused by 3' edge to read 638614 - best edge read 621144 len 4488 erate 0.0398 score 4309.38 - alt edge len 2204 erate 0.0630 score 2065.15 - absdiff 2244.23 percdiff 70.4124 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 286355 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 568 erate 0.0725 score 526.82 - absdiff 3821.93 percdiff 156.7788 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 504829 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 531 erate 0.0637 score 497.18 - absdiff 3851.57 percdiff 158.9613 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 504830 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 545 erate 0.0677 score 508.10 - absdiff 3840.64 percdiff 158.1537 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 606197 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 566 erate 0.0538 score 535.55 - absdiff 3813.20 percdiff 156.1411 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 606199 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 567 erate 0.0639 score 530.77 - absdiff 3817.98 percdiff 156.4900 tig 376 read 343734 pos 9900-15791 IS confused by 3' edge to read 590995 - best edge read 621144 len 2460 erate 0.0496 score 2337.98 - alt edge len 1535 erate 0.0596 score 1443.51 - absdiff 894.47 percdiff 47.3077 saved region 0:13080 - 5 best edges are potentially confused break tig 376 into up to 2 pieces: 0 13580 repeat (length 13580) 13580 15791 unique (length 2211) Creating Unitig 113218 Creating Unitig 113219 For tig 376 repeat region 0 13580 - 47/ 0 reads repeat/unique - unitig 113218 created. For tig 376 unique region 13580 15791 - 0/ 1 reads repeat/unique - unitig 113219 created. Annotating repeats in reads for tig 377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 379/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15191:22061 - closest 5' read 623235 ( +0) 15191:22052 ( -9) saved region 15191:22061 - closest 3' read 205142 ( -18) 15209:23250 ( +1189) search for confused edges: tig 379 read 661168 pos 9712-16791 IS confused by 3' edge to read 81186 - best edge read 430778 len 1589 erate 0.0442 score 1518.77 - alt edge len 725 erate 0.0570 score 683.67 - absdiff 835.09 percdiff 75.8332 tig 379 read 661168 pos 9712-16791 IS confused by 3' edge to read 711566 - best edge read 430778 len 1589 erate 0.0442 score 1518.77 - alt edge len 1474 erate 0.0353 score 1421.97 - absdiff 96.80 percdiff 6.5833 tig 379 read 430778 pos 15212-22046 NOT confused by 3' edge to read 105514 - best edge read 205142 len 6782 erate 0.0353 score 6542.60 - alt edge len 1471 erate 0.0306 score 1425.99 - absdiff 5116.61 percdiff 128.4195 tig 379 read 430778 pos 15212-22046 NOT confused by 3' edge to read 105515 - best edge read 205142 len 6782 erate 0.0353 score 6542.60 - alt edge len 1478 erate 0.0318 score 1431.00 - absdiff 5111.60 percdiff 128.2131 tig 379 read 430778 pos 15212-22046 IS confused by 3' edge to read 711566 - best edge read 205142 len 6782 erate 0.0353 score 6542.60 - alt edge len 6681 erate 0.0341 score 6453.18 - absdiff 89.42 percdiff 1.3761 saved region 15191:22061 - 3 best edges are potentially confused break tig 379 into up to 3 pieces: 0 14691 unique (length 14691) 14691 22561 repeat (length 7870) 22561 43901 unique (length 21340) Creating Unitig 113220 Creating Unitig 113221 Creating Unitig 113222 For tig 379 unique region 0 14691 - 0/ 23 reads repeat/unique - unitig 113220 created. For tig 379 repeat region 14691 22561 - 18/ 0 reads repeat/unique - unitig 113221 created. For tig 379 unique region 22561 43901 - 0/ 30 reads repeat/unique - unitig 113222 created. Annotating repeats in reads for tig 381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 382/113047. Annotated with 1321 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16099:33818 - closest 5' read 404046 ( +0) 16099:24667 ( -9151) saved region 16099:33818 - closest 3' read 496591 ( -8536) 24635:33818 ( +0) search for confused edges: tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 153910 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 2942 erate 0.0459 score 2806.96 - absdiff 1206.28 percdiff 35.3736 tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 153911 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 3061 erate 0.0402 score 2937.95 - absdiff 1075.29 percdiff 30.9383 tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 434120 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 2922 erate 0.0365 score 2815.35 - absdiff 1197.89 percdiff 35.0846 tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 575521 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 2707 erate 0.0399 score 2598.99 - absdiff 1414.25 percdiff 42.7767 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 16358 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2818 erate 0.0735 score 2610.88 - absdiff 1835.07 percdiff 52.0084 tig 382 read 261129 pos 21300-29154 NOT confused by 3' edge to read 121031 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 1663 erate 0.0667 score 1552.08 - absdiff 2893.87 percdiff 96.4941 tig 382 read 261129 pos 21300-29154 NOT confused by 5' edge to read 438836 - best edge read 496587 len 4737 erate 0.0311 score 4589.68 - alt edge len 622 erate 0.0617 score 583.62 - absdiff 4006.06 percdiff 154.8743 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 454220 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2507 erate 0.0459 score 2391.93 - absdiff 2054.02 percdiff 60.0777 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 454221 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2512 erate 0.0485 score 2390.17 - absdiff 2055.78 percdiff 60.1446 tig 382 read 261129 pos 21300-29154 NOT confused by 5' edge to read 575521 - best edge read 496587 len 4737 erate 0.0311 score 4589.68 - alt edge len 1558 erate 0.0161 score 1532.92 - absdiff 3056.76 percdiff 99.8519 tig 382 read 261129 pos 21300-29154 NOT confused by 5' edge to read 642949 - best edge read 496587 len 4737 erate 0.0311 score 4589.68 - alt edge len 631 erate 0.0240 score 615.86 - absdiff 3973.82 percdiff 152.6768 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 644605 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2969 erate 0.0296 score 2881.12 - absdiff 1564.83 percdiff 42.7137 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 644608 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 4157 erate 0.0171 score 4085.92 - absdiff 360.03 percdiff 8.4397 tig 382 read 496587 pos 23244-32540 IS confused by 3' edge to read 16358 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 3440 erate 0.0724 score 3190.94 - absdiff 1394.86 percdiff 35.8726 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 22799 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 737 erate 0.0658 score 688.51 - absdiff 3897.30 percdiff 147.7842 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 121031 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 2269 erate 0.0672 score 2116.52 - absdiff 2469.28 percdiff 73.6843 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 426363 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 846 erate 0.0520 score 802.01 - absdiff 3783.80 percdiff 140.4576 tig 382 read 496587 pos 23244-32540 IS confused by 3' edge to read 454220 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 4691 erate 0.0251 score 4573.26 - absdiff 12.55 percdiff 0.2740 tig 382 read 496587 pos 23244-32540 IS confused by 3' edge to read 454221 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 4696 erate 0.0290 score 4559.82 - absdiff 25.99 percdiff 0.5683 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 642949 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 738 erate 0.0628 score 691.65 - absdiff 3894.15 percdiff 147.5768 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 644608 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 1145 erate 0.0524 score 1085.00 - absdiff 3500.80 percdiff 123.4675 tig 382 read 575521 pos 29537-35196 NOT confused by 5' edge to read 121031 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 672 erate 0.0655 score 627.98 - absdiff 2839.78 percdiff 138.6697 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 261129 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1557 erate 0.0161 score 1531.93 - absdiff 1935.84 percdiff 77.4381 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 404044 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 2331 erate 0.0418 score 2233.56 - absdiff 1234.20 percdiff 43.2953 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 454220 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1515 erate 0.0481 score 1442.13 - absdiff 2025.64 percdiff 82.5125 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 454221 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1520 erate 0.0536 score 1438.53 - absdiff 2029.24 percdiff 82.7199 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 622845 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 2713 erate 0.0399 score 2604.75 - absdiff 863.02 percdiff 28.4237 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 642949 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 2753 erate 0.0241 score 2686.65 - absdiff 781.12 percdiff 25.3839 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 644605 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1973 erate 0.0345 score 1904.93 - absdiff 1562.84 percdiff 58.1770 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 644608 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 3161 erate 0.0158 score 3111.06 - absdiff 356.71 percdiff 10.8443 saved region 16099:33818 - 20 best edges are potentially confused break tig 382 into up to 3 pieces: 0 15599 unique (length 15599) 15599 34318 repeat (length 18719) 34318 35353 unique (length 1035) Creating Unitig 113223 Creating Unitig 113224 Creating Unitig 113225 For tig 382 unique region 0 15599 - 0/ 28 reads repeat/unique - unitig 113223 created. For tig 382 repeat region 15599 34318 - 82/ 0 reads repeat/unique - unitig 113224 created. For tig 382 unique region 34318 35353 - 0/ 10 reads repeat/unique - unitig 113225 created. Annotating repeats in reads for tig 383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 384/113047. Annotated with 102 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 24273:39938 - closest 5' read 319180 ( +6236) 18037:31913 ( -8025) saved region 24273:39938 - closest 3' read 617903 ( -7043) 31316:39938 ( +0) search for confused edges: tig 384 read 561487 pos 26755-36486 IS confused by 5' edge to read 369758 - best edge read 319180 len 5219 erate 0.0353 score 5034.77 - alt edge len 4820 erate 0.0366 score 4643.59 - absdiff 391.18 percdiff 8.0836 tig 384 read 561487 pos 26755-36486 IS confused by 5' edge to read 468260 - best edge read 319180 len 5219 erate 0.0353 score 5034.77 - alt edge len 5219 erate 0.0673 score 4867.76 - absdiff 167.01 percdiff 3.3730 tig 384 read 507288 pos 30042-37989 NOT confused by 5' edge to read 369758 - best edge read 561487 len 7147 erate 0.0197 score 7006.20 - alt edge len 2329 erate 0.0324 score 2253.54 - absdiff 4752.66 percdiff 102.6522 tig 384 read 507287 pos 30062-37979 NOT confused by 3' edge to read 369758 - best edge read 507288 len 7842 erate 0.0255 score 7642.03 - alt edge len 2290 erate 0.0332 score 2213.97 - absdiff 5428.06 percdiff 110.1472 tig 384 read 665113 pos 31064-38008 NOT confused by 3' edge to read 369758 - best edge read 617902 len 6675 erate 0.0064 score 6632.28 - alt edge len 2827 erate 0.0191 score 2773.00 - absdiff 3859.28 percdiff 82.0661 tig 384 read 617902 pos 31285-39786 NOT confused by 5' edge to read 369758 - best edge read 617903 len 8445 erate 0.0079 score 8378.28 - alt edge len 4603 erate 0.0226 score 4498.97 - absdiff 3879.31 percdiff 60.2506 tig 384 read 617902 pos 31285-39786 NOT confused by 5' edge to read 468260 - best edge read 617903 len 8445 erate 0.0079 score 8378.28 - alt edge len 5000 erate 0.0554 score 4723.00 - absdiff 3655.28 percdiff 55.8004 tig 384 read 617904 pos 31315-39925 IS confused by 5' edge to read 369758 - best edge read 319180 len 5136 erate 0.0361 score 4950.59 - alt edge len 4741 erate 0.0381 score 4560.37 - absdiff 390.22 percdiff 8.2057 tig 384 read 617904 pos 31315-39925 IS confused by 5' edge to read 468260 - best edge read 319180 len 5136 erate 0.0361 score 4950.59 - alt edge len 5136 erate 0.0691 score 4781.10 - absdiff 169.49 percdiff 3.4832 saved region 24273:39938 - 4 best edges are potentially confused break tig 384 into up to 2 pieces: 0 23773 unique (length 23773) 23773 39938 repeat (length 16165) Creating Unitig 113226 Creating Unitig 113227 For tig 384 unique region 0 23773 - 0/ 37 reads repeat/unique - unitig 113226 created. For tig 384 repeat region 23773 39938 - 56/ 0 reads repeat/unique - unitig 113227 created. Annotating repeats in reads for tig 386/113047. Annotated with 2054 overlaps. Scan reads to discard spanned repeats. discard region 0:5006 - contained in read 514735 0- 10758 thickest edges to the repeat regions: saved region 5819:26071 - closest 5' read 522455 ( +1609) 4210:15031 (-11040) saved region 5819:26071 - closest 3' read 48215 ( -7391) 13210:26071 ( +0) saved region 33654:39377 - closest 5' read 21567 ( +2811) 30843:37244 ( -2133) saved region 33654:39377 - closest 3' read 377938 ( -20) 33674:40005 ( +628) search for confused edges: tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 24360 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 1497 erate 0.0708 score 1391.01 - absdiff 8755.62 percdiff 151.7748 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 53222 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 604 erate 0.0646 score 564.98 - absdiff 9581.65 percdiff 178.9021 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 225032 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 3763 erate 0.0489 score 3578.99 - absdiff 6567.65 percdiff 95.6991 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 337025 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 3796 erate 0.0579 score 3576.21 - absdiff 6570.42 percdiff 95.7589 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 534660 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 3956 erate 0.0415 score 3791.83 - absdiff 6354.81 percdiff 91.1838 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 104540 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 1893 erate 0.0439 score 1809.90 - absdiff 8266.76 percdiff 139.0943 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 123102 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 2488 erate 0.0664 score 2322.80 - absdiff 7753.86 percdiff 125.0678 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 330219 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 1855 erate 0.0708 score 1723.67 - absdiff 8352.99 percdiff 141.5723 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 330220 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 911 erate 0.0590 score 857.25 - absdiff 9219.41 percdiff 168.6388 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 352782 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 583 erate 0.0586 score 548.84 - absdiff 9527.82 percdiff 179.3389 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 521790 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 3479 erate 0.0296 score 3376.02 - absdiff 6700.64 percdiff 99.6179 tig 386 read 451840 pos 10353-23316 IS confused by 3' edge to read 534660 - best edge read 471952 len 4931 erate 0.0742 score 4565.12 - alt edge len 4136 erate 0.0621 score 3879.15 - absdiff 685.97 percdiff 16.2469 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 585475 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 3418 erate 0.0696 score 3180.11 - absdiff 6896.55 percdiff 104.0458 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 627789 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 2077 erate 0.0338 score 2006.80 - absdiff 8069.86 percdiff 133.5688 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 104540 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 2020 erate 0.0500 score 1919.00 - absdiff 3299.52 percdiff 92.4556 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 146597 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 758 erate 0.0744 score 701.60 - absdiff 4516.91 percdiff 152.5953 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 330220 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 1344 erate 0.0653 score 1256.24 - absdiff 3962.28 percdiff 122.3917 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 521790 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 2334 erate 0.0397 score 2241.34 - absdiff 2977.18 percdiff 79.8186 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 576386 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 2568 erate 0.0519 score 2434.72 - absdiff 2783.80 percdiff 72.7482 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 627789 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 1881 erate 0.0399 score 1805.95 - absdiff 3412.57 percdiff 97.1624 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 104540 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2750 erate 0.0247 score 2682.08 - absdiff 1962.66 percdiff 53.5748 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 120302 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1466 erate 0.0477 score 1396.07 - absdiff 3248.67 percdiff 107.5573 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 123102 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 3032 erate 0.0528 score 2871.91 - absdiff 1772.83 percdiff 47.1707 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 123103 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2957 erate 0.0619 score 2773.96 - absdiff 1870.78 percdiff 50.4341 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 146597 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1486 erate 0.0566 score 1401.89 - absdiff 3242.85 percdiff 107.2613 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 212388 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1531 erate 0.0490 score 1455.98 - absdiff 3188.76 percdiff 104.5371 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 350220 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1976 erate 0.0515 score 1874.24 - absdiff 2770.50 percdiff 84.9981 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 352781 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2069 erate 0.0561 score 1952.93 - absdiff 2691.81 percdiff 81.5988 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 352782 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2066 erate 0.0561 score 1950.10 - absdiff 2694.64 percdiff 81.7197 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 484784 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1139 erate 0.0554 score 1075.90 - absdiff 3568.84 percdiff 124.7707 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 521790 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 4031 erate 0.0535 score 3815.34 - absdiff 829.40 percdiff 19.6073 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 553939 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 3983 erate 0.0601 score 3743.62 - absdiff 901.12 percdiff 21.4849 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 627789 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 3584 erate 0.0201 score 3511.96 - absdiff 1132.78 percdiff 27.7754 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 225032 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 2930 erate 0.0423 score 2806.06 - absdiff 3080.86 percdiff 70.8816 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 306821 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 2451 erate 0.0598 score 2304.43 - absdiff 3582.49 percdiff 87.4701 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 337025 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 3611 erate 0.0507 score 3427.92 - absdiff 2459.00 percdiff 52.7975 tig 386 read 48215 pos 13210-26071 IS confused by 3' edge to read 514738 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 4326 erate 0.0197 score 4240.78 - absdiff 1646.15 percdiff 32.5078 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 534660 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 3449 erate 0.0337 score 3332.77 - absdiff 2554.16 percdiff 55.4065 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 176192 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2968 erate 0.0447 score 2835.33 - absdiff 18.70 percdiff 0.6573 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 408664 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2941 erate 0.0481 score 2799.54 - absdiff 54.49 percdiff 1.9277 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 514738 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 1067 erate 0.0409 score 1023.36 - absdiff 1830.67 percdiff 94.4279 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 522455 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 1589 erate 0.0585 score 1496.04 - absdiff 1357.99 percdiff 62.4351 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 534660 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2120 erate 0.0616 score 1989.41 - absdiff 864.62 percdiff 35.7028 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 603014 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2561 erate 0.0519 score 2428.08 - absdiff 425.94 percdiff 16.1278 saved region 5819:26071 - 14 best edges are potentially confused discard region 33654:39377 - no confusion in best edges break tig 386 into up to 3 pieces: 0 5319 unique (length 5319) 5319 26571 repeat (length 21252) 26571 44088 unique (length 17517) Creating Unitig 113228 Creating Unitig 113229 Creating Unitig 113230 For tig 386 unique region 0 5319 - 0/ 10 reads repeat/unique - unitig 113228 created. For tig 386 repeat region 5319 26571 - 183/ 0 reads repeat/unique - unitig 113229 created. For tig 386 unique region 26571 44088 - 0/ 46 reads repeat/unique - unitig 113230 created. Annotating repeats in reads for tig 388/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 396/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 0:1780 - contained in read 360149 0- 6201 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 398/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 1246:3971 - contained in read 313017 0- 5731 thickest edges to the repeat regions: saved region 10192:14430 - closest 5' read 220680 ( +3385) 6807:14308 ( -122) saved region 10192:14430 - closest 3' read 705796 ( -1215) 11407:14430 ( +0) search for confused edges: tig 398 read 180422 pos 12349-16301 IS confused by 5' edge to read 366016 - best edge read 220680 len 1933 erate 0.0538 score 1829.00 - alt edge len 970 erate 0.0380 score 933.14 - absdiff 895.86 percdiff 64.8673 saved region 10192:14430 - 1 best edges are potentially confused break tig 398 into up to 3 pieces: 0 9692 unique (length 9692) 9692 14930 repeat (length 5238) 14930 32999 unique (length 18069) Creating Unitig 113231 Creating Unitig 113232 Creating Unitig 113233 For tig 398 unique region 0 9692 - 0/ 34 reads repeat/unique - unitig 113231 created. For tig 398 repeat region 9692 14930 - 13/ 0 reads repeat/unique - unitig 113232 created. For tig 398 unique region 14930 32999 - 0/ 33 reads repeat/unique - unitig 113233 created. Annotating repeats in reads for tig 399/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 0:5626 - contained in read 113974 0- 6550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 400/113047. Annotated with 1039 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14963 - closest 5' read 38311 ( +0) 0:7866 ( -7097) saved region 0:14963 - closest 3' read 111422 ( -6113) 6113:16442 ( +1479) search for confused edges: tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 258764 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 612 erate 0.0327 score 591.99 - absdiff 5098.90 percdiff 162.3110 tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 258766 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 613 erate 0.0375 score 590.01 - absdiff 5100.87 percdiff 162.4249 tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 258769 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 614 erate 0.0391 score 589.99 - absdiff 5100.89 percdiff 162.4261 tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 635073 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 782 erate 0.0601 score 735.00 - absdiff 4955.88 percdiff 154.2474 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 54714 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 1296 erate 0.0293 score 1258.03 - absdiff 1528.88 percdiff 75.5949 tig 400 read 611731 pos 816-8907 IS confused by 3' edge to read 54715 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 5624 erate 0.0400 score 5399.04 - absdiff 288.01 percdiff 5.1959 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 258764 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 2697 erate 0.0223 score 2636.86 - absdiff 150.05 percdiff 5.5332 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 258766 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 2698 erate 0.0204 score 2642.96 - absdiff 143.95 percdiff 5.3021 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 258769 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 2699 erate 0.0197 score 2645.83 - absdiff 141.08 percdiff 5.1937 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 364992 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 1982 erate 0.0267 score 1929.08 - absdiff 3757.97 percdiff 98.6845 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 542811 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 1963 erate 0.0423 score 1879.97 - absdiff 3807.09 percdiff 100.6232 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 575958 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 2830 erate 0.0646 score 2647.18 - absdiff 3039.87 percdiff 72.9490 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 644067 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 1699 erate 0.0424 score 1626.96 - absdiff 4060.09 percdiff 111.0222 tig 400 read 611731 pos 816-8907 IS confused by 3' edge to read 648663 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 5901 erate 0.0405 score 5662.01 - absdiff 25.04 percdiff 0.4413 tig 400 read 275687 pos 5610-14464 NOT confused by 5' edge to read 258764 - best edge read 466897 len 5801 erate 0.0472 score 5527.19 - alt edge len 2755 erate 0.0361 score 2655.54 - absdiff 2871.65 percdiff 70.1880 tig 400 read 275687 pos 5610-14464 NOT confused by 5' edge to read 258766 - best edge read 466897 len 5801 erate 0.0472 score 5527.19 - alt edge len 2756 erate 0.0361 score 2656.51 - absdiff 2870.68 percdiff 70.1561 tig 400 read 275687 pos 5610-14464 NOT confused by 5' edge to read 258769 - best edge read 466897 len 5801 erate 0.0472 score 5527.19 - alt edge len 2757 erate 0.0361 score 2657.47 - absdiff 2869.72 percdiff 70.1243 saved region 0:14963 - 6 best edges are potentially confused break tig 400 into up to 2 pieces: 0 15463 repeat (length 15463) 15463 16442 unique (length 979) Creating Unitig 113234 Creating Unitig 113235 For tig 400 repeat region 0 15463 - 32/ 0 reads repeat/unique - unitig 113234 created. For tig 400 unique region 15463 16442 - 0/ 1 reads repeat/unique - unitig 113235 created. Annotating repeats in reads for tig 402/113047. Annotated with 124 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3756:8842 - closest read 149742 ( +0) 3756:8850 ( +8) (contained) saved region 3756:8842 - closest 5' read 149742 ( +0) 3756:8850 ( +8) saved region 3756:8842 - closest 3' read 149742 ( +0) 3756:8850 ( +8) saved region 11619:18647 - closest read 645271 ( +0) 11619:18935 ( +288) (contained) saved region 11619:18647 - closest 5' read 645271 ( +0) 11619:18935 ( +288) saved region 11619:18647 - closest 3' read 645271 ( +0) 11619:18935 ( +288) saved region 21274:23103 - closest read 616916 ( +188) 21086:25525 ( +2422) (contained) saved region 21274:23103 - closest read 77208 ( +0) 21274:30682 ( +7579) (contained) saved region 21274:23103 - closest 5' read 77208 ( +0) 21274:30682 ( +7579) saved region 21274:23103 - closest 3' read 616916 ( +188) 21086:25525 ( +2422) search for confused edges: tig 402 read 215350 pos 384-8633 IS confused by 3' edge to read 166015 - best edge read 574055 len 2782 erate 0.0180 score 2731.92 - alt edge len 1245 erate 0.0414 score 1193.46 - absdiff 1538.47 percdiff 78.3856 tig 402 read 215350 pos 384-8633 IS confused by 3' edge to read 238980 - best edge read 574055 len 2782 erate 0.0180 score 2731.92 - alt edge len 1248 erate 0.0507 score 1184.73 - absdiff 1547.20 percdiff 79.0062 saved region 3756:8842 - 2 best edges are potentially confused discard region 11619:18647 - no confusion in best edges discard region 21274:23103 - no confusion in best edges break tig 402 into up to 3 pieces: 0 3256 unique (length 3256) 3256 9342 repeat (length 6086) 9342 39626 unique (length 30284) Creating Unitig 113236 Creating Unitig 113237 Creating Unitig 113238 For tig 402 unique region 0 3256 - 0/ 8 reads repeat/unique - unitig 113236 created. For tig 402 repeat region 3256 9342 - 13/ 0 reads repeat/unique - unitig 113237 created. For tig 402 unique region 9342 39626 - 0/ 37 reads repeat/unique - unitig 113238 created. Annotating repeats in reads for tig 406/113047. Annotated with 1013 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10375 - closest 5' read 643871 ( +0) 0:8431 ( -1944) saved region 0:10375 - closest 3' read 478040 ( -5609) 5609:14055 ( +3680) saved region 11945:14628 - closest 5' read 478042 ( +6086) 5859:14566 ( -62) saved region 11945:14628 - closest 3' read 54052 ( -529) 12474:23559 ( +8931) search for confused edges: tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 52536 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1424 erate 0.0429 score 1362.91 - absdiff 1223.61 percdiff 61.9639 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 52537 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1409 erate 0.0397 score 1353.06 - absdiff 1233.46 percdiff 62.6188 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 89831 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1184 erate 0.0651 score 1106.92 - absdiff 1479.60 percdiff 80.1204 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 94597 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1460 erate 0.0480 score 1389.92 - absdiff 1196.60 percdiff 60.1846 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 166756 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2142 erate 0.0588 score 2016.05 - absdiff 570.47 percdiff 24.7893 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 166758 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2141 erate 0.0645 score 2002.91 - absdiff 583.62 percdiff 25.4331 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 236227 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 621 erate 0.0555 score 586.53 - absdiff 1999.99 percdiff 126.0606 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 238313 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2358 erate 0.0446 score 2252.83 - absdiff 333.69 percdiff 13.7906 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 247072 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2148 erate 0.0736 score 1989.91 - absdiff 596.62 percdiff 26.0734 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 336357 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2432 erate 0.0581 score 2290.70 - absdiff 295.82 percdiff 12.1307 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 554187 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1319 erate 0.0553 score 1246.06 - absdiff 1340.46 percdiff 69.9509 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 608472 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2324 erate 0.0353 score 2241.96 - absdiff 344.56 percdiff 14.2720 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 608476 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2320 erate 0.0380 score 2231.84 - absdiff 354.68 percdiff 14.7221 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 609430 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1501 erate 0.0581 score 1413.79 - absdiff 1172.73 percdiff 58.6319 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 609431 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1494 erate 0.0601 score 1404.21 - absdiff 1182.31 percdiff 59.2529 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 609433 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1497 erate 0.0552 score 1414.37 - absdiff 1172.16 percdiff 58.5948 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 611814 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2386 erate 0.0531 score 2259.30 - absdiff 327.22 percdiff 13.5052 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 628083 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2120 erate 0.0368 score 2041.98 - absdiff 544.54 percdiff 23.5298 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 628084 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2110 erate 0.0342 score 2037.84 - absdiff 548.68 percdiff 23.7302 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 637543 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1758 erate 0.0586 score 1654.98 - absdiff 931.54 percdiff 43.9250 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 657250 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 775 erate 0.0658 score 724.00 - absdiff 1862.52 percdiff 112.5209 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 657252 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 805 erate 0.0659 score 751.95 - absdiff 1834.57 percdiff 109.9049 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 128466 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1517 erate 0.0455 score 1447.98 - absdiff 453.11 percdiff 27.0591 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 128467 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1888 erate 0.0556 score 1783.03 - absdiff 118.06 percdiff 6.4093 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 146271 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 704 erate 0.0577 score 663.38 - absdiff 1237.71 percdiff 96.5277 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 153997 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1273 erate 0.0503 score 1208.97 - absdiff 692.12 percdiff 44.5086 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 181403 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1480 erate 0.0560 score 1397.12 - absdiff 503.97 percdiff 30.5602 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 201862 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 605 erate 0.0449 score 577.84 - absdiff 1323.25 percdiff 106.7603 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 217044 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1436 erate 0.0460 score 1369.94 - absdiff 531.15 percdiff 32.4757 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 239302 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1441 erate 0.0574 score 1358.29 - absdiff 542.80 percdiff 33.3072 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 276496 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 547 erate 0.0404 score 524.90 - absdiff 1376.19 percdiff 113.4537 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 312191 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1114 erate 0.0586 score 1048.72 - absdiff 852.37 percdiff 57.7916 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 318433 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1947 erate 0.0529 score 1844.00 - absdiff 57.09 percdiff 3.0486 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 326906 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1768 erate 0.0539 score 1672.70 - absdiff 228.39 percdiff 12.7811 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 326908 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1725 erate 0.0622 score 1617.70 - absdiff 283.39 percdiff 16.1070 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 402940 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 826 erate 0.0436 score 789.99 - absdiff 1111.10 percdiff 82.5769 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 419709 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 624 erate 0.0517 score 591.74 - absdiff 1309.35 percdiff 105.0494 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 431510 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 2006 erate 0.0429 score 1919.94 - absdiff 18.85 percdiff 0.9868 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 449040 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1168 erate 0.0515 score 1107.85 - absdiff 793.24 percdiff 52.7257 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 510339 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1976 erate 0.0390 score 1898.94 - absdiff 2.15 percdiff 0.1134 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 518972 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 841 erate 0.0404 score 807.02 - absdiff 1094.07 percdiff 80.7992 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 520339 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1962 erate 0.0526 score 1858.80 - absdiff 42.29 percdiff 2.2496 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 535759 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 745 erate 0.0523 score 706.04 - absdiff 1195.05 percdiff 91.6759 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 535761 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 742 erate 0.0540 score 701.93 - absdiff 1199.16 percdiff 92.1358 saved region 0:10375 - 22 best edges are potentially confused saved region 11945:14628 - 22 best edges are potentially confused break tig 406 into up to 4 pieces: 0 10875 repeat (length 10875) 10875 11445 unique (length 570) 11445 15128 repeat (length 3683) 15128 35105 unique (length 19977) Creating Unitig 113239 Creating Unitig 113240 Creating Unitig 113241 For tig 406 repeat region 0 10875 - 4/ 0 reads repeat/unique - unitig 113239 created. For tig 406 unique region 10875 11445 - 0/ 4 reads repeat/unique - unitig 113240 created. For tig 406 repeat region 11445 15128 - 0/ 0 repeat/unique reads - no new unitig created. For tig 406 unique region 15128 35105 - 0/ 33 reads repeat/unique - unitig 113241 created. Annotating repeats in reads for tig 410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 411/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 4229:3618 - contained in read 357489 0- 4229 thickest edges to the repeat regions: saved region 5266:9483 - closest read 95562 ( +2024) 3242:9483 ( +0) (contained) saved region 5266:9483 - closest 5' read 95562 ( +2024) 3242:9483 ( +0) saved region 5266:9483 - closest 3' read 95562 ( +2024) 3242:9483 ( +0) saved region 17355:24224 - closest 5' read 414902 ( +344) 17011:21439 ( -2785) saved region 17355:24224 - closest 3' read 721690 ( -7) 17362:31916 ( +7692) saved region 31186:35202 - closest 5' read 483691 ( +3414) 27772:32151 ( -3051) saved region 31186:35202 - closest 3' read 258577 ( -103) 31289:38633 ( +3431) search for confused edges: tig 411 read 258577 pos 31289-38633 IS confused by 3' edge to read 171713 - best edge read 676599 len 854 erate 0.0679 score 796.01 - alt edge len 511 erate 0.0705 score 474.97 - absdiff 321.04 percdiff 50.5180 discard region 5266:9483 - no confusion in best edges discard region 17355:24224 - no confusion in best edges saved region 31186:35202 - 1 best edges are potentially confused break tig 411 into up to 3 pieces: 0 30686 unique (length 30686) 30686 35702 repeat (length 5016) 35702 45291 unique (length 9589) Creating Unitig 113242 Creating Unitig 113243 Creating Unitig 113244 For tig 411 unique region 0 30686 - 0/ 33 reads repeat/unique - unitig 113242 created. For tig 411 repeat region 30686 35702 - 11/ 0 reads repeat/unique - unitig 113243 created. For tig 411 unique region 35702 45291 - 0/ 13 reads repeat/unique - unitig 113244 created. Annotating repeats in reads for tig 422/113047. Annotated with 284 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15452:16605 - closest 5' read 390724 ( +4417) 11035:16177 ( -428) saved region 15452:16605 - closest 3' read 215123 ( -8) 15460:21166 ( +4561) saved region 20614:30015 - closest read 694841 ( +1311) 19303:30038 ( +23) (contained) saved region 20614:30015 - closest 5' read 694841 ( +1311) 19303:30038 ( +23) saved region 20614:30015 - closest 3' read 694841 ( +1311) 19303:30038 ( +23) search for confused edges: tig 422 read 215123 pos 15460-21166 IS confused by 5' edge to read 403239 - best edge read 390724 len 717 erate 0.0604 score 673.69 - alt edge len 517 erate 0.0655 score 483.14 - absdiff 190.56 percdiff 32.9446 saved region 15452:16605 - 1 best edges are potentially confused discard region 20614:30015 - no confusion in best edges break tig 422 into up to 3 pieces: 0 14952 unique (length 14952) 14952 17105 repeat (length 2153) 17105 36534 unique (length 19429) Creating Unitig 113245 Creating Unitig 113246 For tig 422 unique region 0 14952 - 0/ 27 reads repeat/unique - unitig 113245 created. For tig 422 repeat region 14952 17105 - 0/ 0 repeat/unique reads - no new unitig created. For tig 422 unique region 17105 36534 - 0/ 48 reads repeat/unique - unitig 113246 created. Annotating repeats in reads for tig 425/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 3438:6353 - contained in read 688789 1505- 6353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 428/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 13955:14652 - contained in read 634679 5676- 19095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 432/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6584:13481 - contained in read 268728 4521- 13481 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 438/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5821:14065 - closest 5' read 573498 ( +0) 5821:13461 ( -604) saved region 5821:14065 - closest 3' read 156543 ( -4902) 10723:14065 ( +0) search for confused edges: tig 438 read 57965 pos 3258-13257 NOT confused by 3' edge to read 23253 - best edge read 567629 len 7195 erate 0.0427 score 6887.77 - alt edge len 4644 erate 0.0073 score 4610.10 - absdiff 2277.67 percdiff 39.6191 tig 438 read 57965 pos 3258-13257 NOT confused by 3' edge to read 23255 - best edge read 567629 len 7195 erate 0.0427 score 6887.77 - alt edge len 4514 erate 0.0069 score 4482.85 - absdiff 2404.92 percdiff 42.3006 tig 438 read 57965 pos 3258-13257 NOT confused by 3' edge to read 276299 - best edge read 567629 len 7195 erate 0.0427 score 6887.77 - alt edge len 3408 erate 0.0067 score 3385.17 - absdiff 3502.61 percdiff 68.1909 tig 438 read 567629 pos 5838-13782 NOT confused by 3' edge to read 23253 - best edge read 366803 len 7274 erate 0.0110 score 7193.99 - alt edge len 5145 erate 0.0169 score 5058.05 - absdiff 2135.94 percdiff 34.8666 tig 438 read 567629 pos 5838-13782 NOT confused by 3' edge to read 23255 - best edge read 366803 len 7274 erate 0.0110 score 7193.99 - alt edge len 5015 erate 0.0154 score 4937.77 - absdiff 2256.22 percdiff 37.1952 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 254971 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5458 erate 0.0585 score 5138.71 - absdiff 1796.93 percdiff 29.7645 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 254972 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5449 erate 0.0602 score 5120.97 - absdiff 1814.67 percdiff 30.1025 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 254974 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5446 erate 0.0592 score 5123.60 - absdiff 1812.04 percdiff 30.0523 tig 438 read 567629 pos 5838-13782 NOT confused by 3' edge to read 276299 - best edge read 366803 len 7274 erate 0.0110 score 7193.99 - alt edge len 3908 erate 0.0171 score 3841.17 - absdiff 3352.81 percdiff 60.7660 tig 438 read 567629 pos 5838-13782 NOT confused by 5' edge to read 289351 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 4152 erate 0.0674 score 3872.16 - absdiff 3063.48 percdiff 56.6903 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 710523 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5346 erate 0.0676 score 4984.61 - absdiff 1951.03 percdiff 32.7347 tig 438 read 366803 pos 6336-13997 NOT confused by 3' edge to read 23253 - best edge read 449978 len 7508 erate 0.0092 score 7438.93 - alt edge len 5376 erate 0.0088 score 5328.69 - absdiff 2110.24 percdiff 33.0561 tig 438 read 366803 pos 6336-13997 NOT confused by 3' edge to read 23255 - best edge read 449978 len 7508 erate 0.0092 score 7438.93 - alt edge len 5246 erate 0.0086 score 5200.88 - absdiff 2238.04 percdiff 35.4126 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 254971 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4954 erate 0.0071 score 4918.83 - absdiff 2323.62 percdiff 38.2134 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 254972 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4945 erate 0.0090 score 4900.49 - absdiff 2341.95 percdiff 38.5731 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 254974 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4942 erate 0.0077 score 4903.95 - absdiff 2338.50 percdiff 38.5053 tig 438 read 366803 pos 6336-13997 NOT confused by 3' edge to read 276299 - best edge read 449978 len 7508 erate 0.0092 score 7438.93 - alt edge len 4141 erate 0.0097 score 4100.83 - absdiff 3338.09 percdiff 57.8538 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 289351 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 3649 erate 0.0041 score 3634.04 - absdiff 3608.41 percdiff 66.3525 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 418160 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 2188 erate 0.0161 score 2152.77 - absdiff 5089.67 percdiff 108.3460 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 418161 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 2220 erate 0.0113 score 2194.91 - absdiff 5047.53 percdiff 106.9692 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 710523 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4843 erate 0.0139 score 4775.68 - absdiff 2466.76 percdiff 41.0507 tig 438 read 449978 pos 6344-14004 IS confused by 5' edge to read 23253 - best edge read 698064 len 7400 erate 0.0057 score 7357.82 - alt edge len 5373 erate 0.0134 score 5301.00 - absdiff 2056.82 percdiff 32.4962 tig 438 read 449978 pos 6344-14004 NOT confused by 5' edge to read 23255 - best edge read 698064 len 7400 erate 0.0057 score 7357.82 - alt edge len 5243 erate 0.0120 score 5180.08 - absdiff 2177.74 percdiff 34.7384 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 254971 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4943 erate 0.0085 score 4900.98 - absdiff 2511.19 percdiff 40.7887 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 254972 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4934 erate 0.0114 score 4877.75 - absdiff 2534.42 percdiff 41.2439 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 254974 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4931 erate 0.0092 score 4885.63 - absdiff 2526.54 percdiff 41.0893 tig 438 read 449978 pos 6344-14004 NOT confused by 5' edge to read 276299 - best edge read 698064 len 7400 erate 0.0057 score 7357.82 - alt edge len 4140 erate 0.0121 score 4089.91 - absdiff 3267.91 percdiff 57.0928 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 289351 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 3637 erate 0.0071 score 3611.18 - absdiff 3801.00 percdiff 68.9626 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 418160 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 2181 erate 0.0184 score 2140.87 - absdiff 5271.31 percdiff 110.3586 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 418161 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 2213 erate 0.0136 score 2182.90 - absdiff 5229.27 percdiff 108.9990 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 710523 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4832 erate 0.0164 score 4752.76 - absdiff 2659.42 percdiff 43.7227 tig 438 read 698064 pos 6439-14018 IS confused by 5' edge to read 23253 - best edge read 174419 len 7049 erate 0.0024 score 7032.08 - alt edge len 5394 erate 0.0089 score 5345.99 - absdiff 1686.09 percdiff 27.2432 tig 438 read 698064 pos 6439-14018 IS confused by 5' edge to read 23255 - best edge read 174419 len 7049 erate 0.0024 score 7032.08 - alt edge len 5264 erate 0.0082 score 5220.84 - absdiff 1811.25 percdiff 29.5643 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 254971 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4854 erate 0.0068 score 4820.99 - absdiff 2561.68 percdiff 41.9822 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 254972 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4845 erate 0.0093 score 4799.94 - absdiff 2582.74 percdiff 42.4003 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 254974 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4842 erate 0.0079 score 4803.75 - absdiff 2578.93 percdiff 42.3246 tig 438 read 698064 pos 6439-14018 NOT confused by 5' edge to read 276299 - best edge read 174419 len 7049 erate 0.0024 score 7032.08 - alt edge len 4159 erate 0.0075 score 4127.81 - absdiff 2904.27 percdiff 52.0485 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 289351 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 3548 erate 0.0042 score 3533.10 - absdiff 3849.58 percdiff 70.5324 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 418160 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 2088 erate 0.0159 score 2054.80 - absdiff 5327.88 percdiff 112.9089 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 418161 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 2120 erate 0.0109 score 2096.89 - absdiff 5285.79 percdiff 111.5195 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 710523 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4742 erate 0.0134 score 4678.46 - absdiff 2704.22 percdiff 44.8419 tig 438 read 174419 pos 6822-14020 IS confused by 5' edge to read 23253 - best edge read 151656 len 6087 erate 0.0144 score 5999.35 - alt edge len 5396 erate 0.0098 score 5343.12 - absdiff 656.23 percdiff 11.5712 tig 438 read 174419 pos 6822-14020 IS confused by 5' edge to read 23255 - best edge read 151656 len 6087 erate 0.0144 score 5999.35 - alt edge len 5266 erate 0.0086 score 5220.71 - absdiff 778.63 percdiff 13.8793 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 254971 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4478 erate 0.0063 score 4449.79 - absdiff 2582.29 percdiff 44.9804 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 254972 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4469 erate 0.0092 score 4427.89 - absdiff 2604.20 percdiff 45.4486 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 254974 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4466 erate 0.0070 score 4434.74 - absdiff 2597.34 percdiff 45.3019 tig 438 read 174419 pos 6822-14020 IS confused by 5' edge to read 276299 - best edge read 151656 len 6087 erate 0.0144 score 5999.35 - alt edge len 4159 erate 0.0080 score 4125.73 - absdiff 1873.62 percdiff 37.0095 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 289351 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 3173 erate 0.0038 score 3160.94 - absdiff 3871.14 percdiff 75.9566 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 418160 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 1711 erate 0.0165 score 1682.77 - absdiff 5349.31 percdiff 122.7632 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 418161 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 1743 erate 0.0104 score 1724.87 - absdiff 5307.21 percdiff 121.2113 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 663588 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 1696 erate 0.0476 score 1615.27 - absdiff 5416.81 percdiff 125.2825 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 710523 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4367 erate 0.0141 score 4305.43 - absdiff 2726.66 percdiff 48.0998 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 254971 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3499 erate 0.0241 score 3414.67 - absdiff 2562.99 percdiff 54.5762 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 254972 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3490 erate 0.0265 score 3397.52 - absdiff 2580.15 percdiff 55.0421 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 254974 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3487 erate 0.0259 score 3396.69 - absdiff 2580.98 percdiff 55.0647 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 289351 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 2201 erate 0.0178 score 2161.82 - absdiff 3815.84 percdiff 93.7612 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 418160 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 746 erate 0.0474 score 710.64 - absdiff 5267.02 percdiff 157.4996 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 418161 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 778 erate 0.0429 score 744.62 - absdiff 5233.04 percdiff 155.6922 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 663588 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 732 erate 0.0661 score 683.61 - absdiff 5294.05 percdiff 158.9499 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 710523 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3391 erate 0.0317 score 3283.51 - absdiff 2694.16 percdiff 58.1818 saved region 5821:14065 - 10 best edges are potentially confused break tig 438 into up to 3 pieces: 0 5321 unique (length 5321) 5321 14565 repeat (length 9244) 14565 31410 unique (length 16845) Creating Unitig 113247 Creating Unitig 113248 Creating Unitig 113249 For tig 438 unique region 0 5321 - 0/ 7 reads repeat/unique - unitig 113247 created. For tig 438 repeat region 5321 14565 - 96/ 0 reads repeat/unique - unitig 113248 created. For tig 438 unique region 14565 31410 - 0/ 18 reads repeat/unique - unitig 113249 created. Annotating repeats in reads for tig 442/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 12954:13784 - contained in read 98185 8917- 17056 discard region 14215:14928 - contained in read 98185 8917- 17056 discard region 18803:20172 - contained in read 523371 10621- 20757 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 454/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 6637:5942 - contained in read 565065 4335- 12393 discard region 7210:18149 - contained in read 102864 5942- 18975 discard region 20061:23751 - contained in read 124905 12058- 25493 discard region 38462:39684 - contained in read 178038 22527- 42117 discard region 41004:42300 - contained in read 564889 37388- 46186 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 459/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 8021:6724 - contained in read 684689 0- 7530 discard region 41793:47549 - contained in read 30247 38982- 48336 thickest edges to the repeat regions: saved region 17398:18010 - closest read 683099 ( +5630) 11768:18036 ( +26) (contained) saved region 17398:18010 - closest read 717931 ( +0) 17398:23866 ( +5856) (contained) saved region 17398:18010 - closest 5' read 717931 ( +0) 17398:23866 ( +5856) saved region 17398:18010 - closest 3' read 683099 ( +5630) 11768:18036 ( +26) search for confused edges: discard region 17398:18010 - no confusion in best edges Annotating repeats in reads for tig 461/113047. Annotated with 334 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9350 - closest 5' read 339278 ( +0) 0:5001 ( -4349) saved region 0:9350 - closest 3' read 706969 ( -1501) 1501:13578 ( +4228) search for confused edges: tig 461 read 706969 pos 1501-13578 IS confused by 5' edge to read 250405 - best edge read 327420 len 6389 erate 0.0664 score 5964.77 - alt edge len 4794 erate 0.0725 score 4446.44 - absdiff 1518.34 percdiff 29.1673 tig 461 read 706969 pos 1501-13578 IS confused by 5' edge to read 574860 - best edge read 327420 len 6389 erate 0.0664 score 5964.77 - alt edge len 5870 erate 0.0625 score 5503.12 - absdiff 461.65 percdiff 8.0511 tig 461 read 706969 pos 1501-13578 NOT confused by 5' edge to read 653348 - best edge read 327420 len 6389 erate 0.0664 score 5964.77 - alt edge len 3322 erate 0.0664 score 3101.42 - absdiff 2863.35 percdiff 63.1655 saved region 0:9350 - 2 best edges are potentially confused break tig 461 into up to 2 pieces: 0 9850 repeat (length 9850) 9850 13618 unique (length 3768) Creating Unitig 113250 Creating Unitig 113251 For tig 461 repeat region 0 9850 - 16/ 0 reads repeat/unique - unitig 113250 created. For tig 461 unique region 9850 13618 - 0/ 8 reads repeat/unique - unitig 113251 created. Annotating repeats in reads for tig 466/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13227:13864 - contained in read 439233 8340- 14997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 469/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9168:6547 - contained in read 17406 0- 7134 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 471/113047. Annotated with 540 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1164:21508 - closest 5' read 28604 ( +1164) 0:16899 ( -4609) saved region 1164:21508 - closest 3' read 28603 ( -3467) 4631:21508 ( +0) search for confused edges: discard region 1164:21508 - no confusion in best edges Annotating repeats in reads for tig 474/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 10899:15185 - contained in read 232150 10199- 16082 thickest edges to the repeat regions: saved region 4899:9057 - closest 5' read 412488 ( +2161) 2738:7354 ( -1703) saved region 4899:9057 - closest 3' read 216033 ( -1848) 6747:15105 ( +6048) search for confused edges: discard region 4899:9057 - no confusion in best edges Annotating repeats in reads for tig 477/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6437:12134 - closest read 150420 ( +0) 6437:12324 ( +190) (contained) saved region 6437:12134 - closest 5' read 150420 ( +0) 6437:12324 ( +190) saved region 6437:12134 - closest 3' read 150420 ( +0) 6437:12324 ( +190) search for confused edges: tig 477 read 67516 pos 5469-11849 NOT confused by 5' edge to read 360909 - best edge read 580642 len 5311 erate 0.0307 score 5147.95 - alt edge len 2169 erate 0.0320 score 2099.59 - absdiff 3048.36 percdiff 84.1212 tig 477 read 67516 pos 5469-11849 NOT confused by 5' edge to read 360910 - best edge read 580642 len 5311 erate 0.0307 score 5147.95 - alt edge len 2138 erate 0.0303 score 2073.22 - absdiff 3074.73 percdiff 85.1589 tig 477 read 580642 pos 6445-12428 NOT confused by 5' edge to read 146784 - best edge read 67516 len 5314 erate 0.0284 score 5163.08 - alt edge len 2898 erate 0.0121 score 2862.93 - absdiff 2300.15 percdiff 57.3173 tig 477 read 580642 pos 6445-12428 NOT confused by 5' edge to read 358123 - best edge read 67516 len 5314 erate 0.0284 score 5163.08 - alt edge len 2885 erate 0.0669 score 2691.99 - absdiff 2471.09 percdiff 62.9170 tig 477 read 580642 pos 6445-12428 IS confused by 5' edge to read 547555 - best edge read 67516 len 5314 erate 0.0284 score 5163.08 - alt edge len 3538 erate 0.0249 score 3449.90 - absdiff 1713.18 percdiff 39.7813 saved region 6437:12134 - 1 best edges are potentially confused break tig 477 into up to 3 pieces: 0 5937 unique (length 5937) 5937 12634 repeat (length 6697) 12634 15700 unique (length 3066) Creating Unitig 113252 Creating Unitig 113253 Creating Unitig 113254 For tig 477 unique region 0 5937 - 0/ 11 reads repeat/unique - unitig 113252 created. For tig 477 repeat region 5937 12634 - 19/ 0 reads repeat/unique - unitig 113253 created. For tig 477 unique region 12634 15700 - 0/ 4 reads repeat/unique - unitig 113254 created. Annotating repeats in reads for tig 478/113047. Annotated with 117 overlaps. Scan reads to discard spanned repeats. discard region 0:2259 - contained in read 496546 0- 9539 discard region 9444:12971 - contained in read 108011 6492- 13566 thickest edges to the repeat regions: saved region 16264:19797 - closest read 87332 ( +2587) 13677:20092 ( +295) (contained) saved region 16264:19797 - closest 5' read 87332 ( +2587) 13677:20092 ( +295) saved region 16264:19797 - closest 3' read 87332 ( +2587) 13677:20092 ( +295) saved region 23721:26525 - closest read 411755 ( +0) 23721:29583 ( +3058) (contained) saved region 23721:26525 - closest 5' read 411755 ( +0) 23721:29583 ( +3058) saved region 23721:26525 - closest 3' read 411755 ( +0) 23721:29583 ( +3058) saved region 28711:30004 - closest 5' read 411755 ( +4990) 23721:29583 ( -421) saved region 28711:30004 - closest 3' read 606735 ( -57) 28768:36307 ( +6303) search for confused edges: discard region 16264:19797 - no confusion in best edges discard region 23721:26525 - no confusion in best edges discard region 28711:30004 - no confusion in best edges Annotating repeats in reads for tig 479/113047. Annotated with 185 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12461:16904 - closest read 520263 ( +1597) 10864:16904 ( +0) (contained) saved region 12461:16904 - closest 5' read 520263 ( +1597) 10864:16904 ( +0) saved region 12461:16904 - closest 3' read 520263 ( +1597) 10864:16904 ( +0) saved region 21771:31113 - closest 5' read 568959 ( +523) 21248:27495 ( -3618) saved region 21771:31113 - closest 3' read 661474 ( -646) 22417:34540 ( +3427) search for confused edges: tig 479 read 582819 pos 12465-18180 NOT confused by 3' edge to read 47237 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 691 erate 0.0391 score 663.98 - absdiff 3684.61 percdiff 147.0147 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 118357 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2563 erate 0.0560 score 2419.47 - absdiff 1929.12 percdiff 57.0066 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 118358 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2542 erate 0.0423 score 2434.47 - absdiff 1914.12 percdiff 56.4382 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 388130 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 4288 erate 0.0694 score 3990.41 - absdiff 358.18 percdiff 8.5905 tig 479 read 582819 pos 12465-18180 NOT confused by 3' edge to read 623947 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 696 erate 0.0547 score 657.93 - absdiff 3690.67 percdiff 147.4343 tig 479 read 582819 pos 12465-18180 NOT confused by 3' edge to read 635630 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 692 erate 0.0666 score 645.91 - absdiff 3702.68 percdiff 148.2702 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 708594 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2940 erate 0.0562 score 2774.77 - absdiff 1573.82 percdiff 44.1876 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 708595 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2948 erate 0.0637 score 2760.21 - absdiff 1588.38 percdiff 44.6877 tig 479 read 469811 pos 17609-26575 IS confused by 3' edge to read 465571 - best edge read 661474 len 4112 erate 0.0151 score 4049.91 - alt edge len 2104 erate 0.0076 score 2088.01 - absdiff 1961.90 percdiff 63.9272 tig 479 read 469811 pos 17609-26575 IS confused by 3' edge to read 669962 - best edge read 661474 len 4112 erate 0.0151 score 4049.91 - alt edge len 3837 erate 0.0102 score 3797.86 - absdiff 252.05 percdiff 6.4234 saved region 12461:16904 - 5 best edges are potentially confused saved region 21771:31113 - 2 best edges are potentially confused break tig 479 into up to 5 pieces: 0 11961 unique (length 11961) 11961 17404 repeat (length 5443) 17404 21271 unique (length 3867) 21271 31613 repeat (length 10342) 31613 36300 unique (length 4687) Creating Unitig 113255 Creating Unitig 113256 Creating Unitig 113257 Creating Unitig 113258 For tig 479 unique region 0 11961 - 0/ 19 reads repeat/unique - unitig 113255 created. For tig 479 repeat region 11961 17404 - 0/ 0 repeat/unique reads - no new unitig created. For tig 479 unique region 17404 21271 - 0/ 14 reads repeat/unique - unitig 113256 created. For tig 479 repeat region 21271 31613 - 19/ 0 reads repeat/unique - unitig 113257 created. For tig 479 unique region 31613 36300 - 0/ 7 reads repeat/unique - unitig 113258 created. Annotating repeats in reads for tig 480/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5934:10535 - closest read 38615 ( +1069) 4865:10535 ( +0) (contained) saved region 5934:10535 - closest 5' read 38615 ( +1069) 4865:10535 ( +0) saved region 5934:10535 - closest 3' read 38615 ( +1069) 4865:10535 ( +0) saved region 16750:19428 - closest read 365284 ( +482) 16268:19437 ( +9) (contained) saved region 16750:19428 - closest 5' read 365284 ( +482) 16268:19437 ( +9) saved region 16750:19428 - closest 3' read 365284 ( +482) 16268:19437 ( +9) search for confused edges: discard region 5934:10535 - no confusion in best edges discard region 16750:19428 - no confusion in best edges Annotating repeats in reads for tig 481/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13759:16448 - closest read 266653 ( +0) 13759:21987 ( +5539) (contained) saved region 13759:16448 - closest 5' read 266653 ( +0) 13759:21987 ( +5539) saved region 13759:16448 - closest 3' read 266653 ( +0) 13759:21987 ( +5539) search for confused edges: discard region 13759:16448 - no confusion in best edges Annotating repeats in reads for tig 482/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 32634:34380 - contained in read 68649 30595- 35993 thickest edges to the repeat regions: saved region 30577:31182 - closest read 706235 (+11402) 19175:31182 ( +0) (contained) saved region 30577:31182 - closest 5' read 706235 (+11402) 19175:31182 ( +0) saved region 30577:31182 - closest 3' read 706235 (+11402) 19175:31182 ( +0) search for confused edges: discard region 30577:31182 - no confusion in best edges Annotating repeats in reads for tig 484/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 14174:15206 - contained in read 668263 10460- 17138 thickest edges to the repeat regions: saved region 7353:8161 - closest read 46816 ( +7317) 36:8161 ( +0) (contained) saved region 7353:8161 - closest 5' read 46816 ( +7317) 36:8161 ( +0) saved region 7353:8161 - closest 3' read 46816 ( +7317) 36:8161 ( +0) saved region 15422:23242 - closest 5' read 76319 ( +4401) 11021:20894 ( -2348) saved region 15422:23242 - closest 3' read 262164 ( -3072) 18494:23518 ( +276) search for confused edges: tig 484 read 76320 pos 11014-20886 NOT confused by 3' edge to read 188286 - best edge read 511841 len 4501 erate 0.0082 score 4464.09 - alt edge len 645 erate 0.0187 score 632.94 - absdiff 3831.15 percdiff 150.3288 tig 484 read 511841 pos 16349-22033 IS confused by 3' edge to read 188286 - best edge read 262164 len 3500 erate 0.0329 score 3384.85 - alt edge len 1778 erate 0.0174 score 1747.06 - absdiff 1637.79 percdiff 63.8276 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 217657 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 2994 erate 0.0393 score 2876.34 - absdiff 527.86 percdiff 16.8093 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 217658 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 2981 erate 0.0371 score 2870.40 - absdiff 533.79 percdiff 17.0142 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 217661 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 2979 erate 0.0379 score 2866.10 - absdiff 538.10 percdiff 17.1634 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 329998 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 1805 erate 0.0236 score 1762.40 - absdiff 1641.79 percdiff 63.5541 discard region 7353:8161 - no confusion in best edges saved region 15422:23242 - 5 best edges are potentially confused break tig 484 into up to 3 pieces: 0 14922 unique (length 14922) 14922 23742 repeat (length 8820) 23742 26516 unique (length 2774) Creating Unitig 113259 Creating Unitig 113260 Creating Unitig 113261 For tig 484 unique region 0 14922 - 0/ 21 reads repeat/unique - unitig 113259 created. For tig 484 repeat region 14922 23742 - 8/ 0 reads repeat/unique - unitig 113260 created. For tig 484 unique region 23742 26516 - 0/ 5 reads repeat/unique - unitig 113261 created. Annotating repeats in reads for tig 485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 487/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 725:0 - contained in read 487199 0- 9357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 488/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 490/113047. Annotated with 119 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2699:8215 - closest 5' read 161529 ( +2697) 2:6179 ( -2036) saved region 2699:8215 - closest 3' read 95146 ( -487) 3186:8613 ( +398) search for confused edges: tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 66229 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 2338 erate 0.0419 score 2240.04 - absdiff 497.69 percdiff 19.9965 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 66230 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 2498 erate 0.0440 score 2388.09 - absdiff 349.64 percdiff 13.6423 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 98585 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 1783 erate 0.0589 score 1677.98 - absdiff 1059.75 percdiff 47.9989 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 98586 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 1782 erate 0.0596 score 1675.79 - absdiff 1061.94 percdiff 48.1219 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 651902 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 2597 erate 0.0499 score 2467.41 - absdiff 270.32 percdiff 10.3866 saved region 2699:8215 - 5 best edges are potentially confused break tig 490 into up to 3 pieces: 0 2199 unique (length 2199) 2199 8715 repeat (length 6516) 8715 9439 unique (length 724) Creating Unitig 113262 Creating Unitig 113263 Creating Unitig 113264 For tig 490 unique region 0 2199 - 0/ 2 reads repeat/unique - unitig 113262 created. For tig 490 repeat region 2199 8715 - 11/ 0 reads repeat/unique - unitig 113263 created. For tig 490 unique region 8715 9439 - 0/ 4 reads repeat/unique - unitig 113264 created. Annotating repeats in reads for tig 492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 494/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 28541:27949 - contained in read 422920 19516- 29500 thickest edges to the repeat regions: saved region 14303:19861 - closest 5' read 518324 ( +7200) 7103:17465 ( -2396) saved region 14303:19861 - closest 3' read 165943 ( -988) 15291:23260 ( +3399) search for confused edges: discard region 14303:19861 - no confusion in best edges Annotating repeats in reads for tig 496/113047. Annotated with 996 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14968 - closest 5' read 615028 ( +0) 0:10795 ( -4173) saved region 0:14968 - closest 3' read 122819 ( -752) 752:14968 ( +0) search for confused edges: discard region 0:14968 - no confusion in best edges Annotating repeats in reads for tig 497/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5042:8539 - closest read 499822 ( +312) 4730:12638 ( +4099) (contained) saved region 5042:8539 - closest 5' read 499822 ( +312) 4730:12638 ( +4099) saved region 5042:8539 - closest 3' read 499822 ( +312) 4730:12638 ( +4099) search for confused edges: discard region 5042:8539 - no confusion in best edges Annotating repeats in reads for tig 499/113047. Annotated with 484 overlaps. Scan reads to discard spanned repeats. discard region 23786:23179 - contained in read 682170 16254- 23776 discard region 34312:35851 - contained in read 144248 31181- 36704 thickest edges to the repeat regions: saved region 16254:23064 - closest read 682170 ( +0) 16254:23776 ( +712) (contained) saved region 16254:23064 - closest 5' read 682170 ( +0) 16254:23776 ( +712) saved region 16254:23064 - closest 3' read 682170 ( +0) 16254:23776 ( +712) saved region 24148:27007 - closest 5' read 538894 ( +5476) 18672:26927 ( -80) saved region 24148:27007 - closest 3' read 714611 ( -1206) 25354:31668 ( +4661) search for confused edges: tig 499 read 538894 pos 18672-26927 IS confused by 5' edge to read 57749 - best edge read 698726 len 934 erate 0.0289 score 907.01 - alt edge len 814 erate 0.0283 score 790.96 - absdiff 116.04 percdiff 13.6685 tig 499 read 538894 pos 18672-26927 IS confused by 5' edge to read 154912 - best edge read 698726 len 934 erate 0.0289 score 907.01 - alt edge len 831 erate 0.0529 score 787.04 - absdiff 119.97 percdiff 14.1634 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 20376 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 932 erate 0.0358 score 898.63 - absdiff 534.78 percdiff 45.8637 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 20379 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 934 erate 0.0302 score 905.79 - absdiff 527.62 percdiff 45.1112 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 214721 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 1505 erate 0.0281 score 1462.71 - absdiff 29.29 percdiff 2.0229 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 434131 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 1503 erate 0.0452 score 1435.06 - absdiff 1.65 percdiff 0.1149 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 581053 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 1505 erate 0.0306 score 1458.95 - absdiff 25.53 percdiff 1.7654 saved region 16254:23064 - 2 best edges are potentially confused saved region 24148:27007 - 5 best edges are potentially confused break tig 499 into up to 5 pieces: 0 15754 unique (length 15754) 15754 23564 repeat (length 7810) 23564 23648 unique (length 84) 23648 27507 repeat (length 3859) 27507 41144 unique (length 13637) Creating Unitig 113265 Creating Unitig 113266 Creating Unitig 113267 Creating Unitig 113268 For tig 499 unique region 0 15754 - 0/ 9 reads repeat/unique - unitig 113265 created. For tig 499 repeat region 15754 23564 - 5/ 0 reads repeat/unique - unitig 113267 created. For tig 499 unique region 23564 23648 - 0/ 8 reads repeat/unique - unitig 113266 created. For tig 499 repeat region 23648 27507 - 0/ 0 repeat/unique reads - no new unitig created. For tig 499 unique region 27507 41144 - 0/ 56 reads repeat/unique - unitig 113268 created. Annotating repeats in reads for tig 500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 502/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 0:954 - contained in read 72406 0- 5161 thickest edges to the repeat regions: saved region 3715:11840 - closest 5' read 409380 ( +2122) 1593:10627 ( -1213) saved region 3715:11840 - closest 3' read 42225 ( -2818) 6533:14634 ( +2794) saved region 25060:26207 - closest read 479900 ( +7216) 17844:26207 ( +0) (contained) saved region 25060:26207 - closest read 239879 ( +5917) 19143:26213 ( +6) (contained) saved region 25060:26207 - closest 5' read 239879 ( +5917) 19143:26213 ( +6) saved region 25060:26207 - closest 3' read 479900 ( +7216) 17844:26207 ( +0) search for confused edges: tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 49993 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 3511 erate 0.0100 score 3475.89 - absdiff 2466.23 percdiff 52.3727 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 80164 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 808 erate 0.0223 score 789.98 - absdiff 5152.14 percdiff 153.0618 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 80166 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 2614 erate 0.0227 score 2554.66 - absdiff 3387.46 percdiff 79.7351 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 144058 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 2884 erate 0.0397 score 2769.51 - absdiff 3172.62 percdiff 72.8364 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 313468 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 2659 erate 0.0420 score 2547.32 - absdiff 3394.80 percdiff 79.9770 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 348390 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 3848 erate 0.0094 score 3811.83 - absdiff 2130.30 percdiff 43.6807 tig 502 read 409380 pos 1593-10627 IS confused by 3' edge to read 620578 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 4896 erate 0.0248 score 4774.58 - absdiff 1167.55 percdiff 21.7893 tig 502 read 409380 pos 1593-10627 IS confused by 3' edge to read 620580 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 4903 erate 0.0205 score 4802.49 - absdiff 1139.64 percdiff 21.2132 tig 502 read 579291 pos 4571-11823 IS confused by 5' edge to read 44331 - best edge read 409380 len 6043 erate 0.0131 score 5963.84 - alt edge len 5882 erate 0.0123 score 5809.65 - absdiff 154.19 percdiff 2.6192 tig 502 read 579291 pos 4571-11823 IS confused by 5' edge to read 643528 - best edge read 409380 len 6043 erate 0.0131 score 5963.84 - alt edge len 5829 erate 0.0137 score 5749.14 - absdiff 214.69 percdiff 3.6659 tig 502 read 42224 pos 6556-14635 IS confused by 5' edge to read 44331 - best edge read 579291 len 5232 erate 0.0094 score 5182.82 - alt edge len 3894 erate 0.0103 score 3853.89 - absdiff 1328.93 percdiff 29.4117 tig 502 read 42224 pos 6556-14635 IS confused by 5' edge to read 643528 - best edge read 579291 len 5232 erate 0.0094 score 5182.82 - alt edge len 3841 erate 0.0138 score 3787.99 - absdiff 1394.82 percdiff 31.0970 tig 502 read 42224 pos 6556-14635 IS confused by 5' edge to read 720885 - best edge read 579291 len 5232 erate 0.0094 score 5182.82 - alt edge len 3590 erate 0.0326 score 3472.97 - absdiff 1709.85 percdiff 39.5078 tig 502 read 592069 pos 25070-30402 IS confused by 5' edge to read 695734 - best edge read 479900 len 1125 erate 0.0693 score 1047.04 - alt edge len 1061 erate 0.0312 score 1027.90 - absdiff 19.14 percdiff 1.8449 saved region 3715:11840 - 7 best edges are potentially confused saved region 25060:26207 - 1 best edges are potentially confused break tig 502 into up to 5 pieces: 0 3215 unique (length 3215) 3215 12340 repeat (length 9125) 12340 24560 unique (length 12220) 24560 26707 repeat (length 2147) 26707 32777 unique (length 6070) Creating Unitig 113269 Creating Unitig 113270 Creating Unitig 113271 Creating Unitig 113272 For tig 502 unique region 0 3215 - 0/ 6 reads repeat/unique - unitig 113269 created. For tig 502 repeat region 3215 12340 - 16/ 0 reads repeat/unique - unitig 113270 created. For tig 502 unique region 12340 24560 - 0/ 23 reads repeat/unique - unitig 113271 created. For tig 502 repeat region 24560 26707 - 0/ 0 repeat/unique reads - no new unitig created. For tig 502 unique region 26707 32777 - 0/ 8 reads repeat/unique - unitig 113272 created. Annotating repeats in reads for tig 505/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 11273:12159 - contained in read 86815 3936- 16490 thickest edges to the repeat regions: saved region 15248:17943 - closest 5' read 193715 ( +5500) 9748:16758 ( -1185) saved region 15248:17943 - closest 3' read 331861 ( -11) 15259:22192 ( +4249) saved region 21499:22198 - closest read 686902 ( +0) 21499:28097 ( +5899) (contained) saved region 21499:22198 - closest 5' read 686902 ( +0) 21499:28097 ( +5899) saved region 21499:22198 - closest 3' read 686902 ( +0) 21499:28097 ( +5899) search for confused edges: tig 505 read 193714 pos 9760-16621 IS confused by 5' edge to read 241451 - best edge read 331857 len 1349 erate 0.0442 score 1289.37 - alt edge len 1041 erate 0.0418 score 997.49 - absdiff 291.89 percdiff 25.5274 saved region 15248:17943 - 1 best edges are potentially confused discard region 21499:22198 - no confusion in best edges break tig 505 into up to 3 pieces: 0 14748 unique (length 14748) 14748 18443 repeat (length 3695) 18443 35412 unique (length 16969) Creating Unitig 113273 Creating Unitig 113274 For tig 505 unique region 0 14748 - 0/ 22 reads repeat/unique - unitig 113273 created. For tig 505 repeat region 14748 18443 - 0/ 0 repeat/unique reads - no new unitig created. For tig 505 unique region 18443 35412 - 0/ 22 reads repeat/unique - unitig 113274 created. Annotating repeats in reads for tig 506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 514/113047. Annotated with 128 overlaps. Scan reads to discard spanned repeats. discard region 0:3271 - contained in read 624657 0- 7598 discard region 6721:13030 - contained in read 190346 5668- 13030 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 515/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 517/113047. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 1504:4941 - contained in read 515208 0- 6573 thickest edges to the repeat regions: saved region 5586:6957 - closest 5' read 515212 ( +5392) 194:6754 ( -203) saved region 5586:6957 - closest 3' read 93951 ( -483) 6069:13660 ( +6703) saved region 33091:37339 - closest read 314496 ( +6037) 27054:37516 ( +177) (contained) saved region 33091:37339 - closest read 670474 ( +1330) 31761:37637 ( +298) (contained) saved region 33091:37339 - closest read 670476 ( +1330) 31761:37486 ( +147) (contained) saved region 33091:37339 - closest read 670473 ( +1253) 31838:37603 ( +264) (contained) saved region 33091:37339 - closest 5' read 670474 ( +1330) 31761:37637 ( +298) saved region 33091:37339 - closest 3' read 314496 ( +6037) 27054:37516 ( +177) search for confused edges: discard region 5586:6957 - no confusion in best edges discard region 33091:37339 - no confusion in best edges Annotating repeats in reads for tig 520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 522/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4411:4965 - contained in read 310760 0- 12394 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 538/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7472:11157 - closest read 575148 ( +375) 7097:15015 ( +3858) (contained) saved region 7472:11157 - closest read 162426 ( +82) 7390:13617 ( +2460) (contained) saved region 7472:11157 - closest 5' read 575148 ( +375) 7097:15015 ( +3858) saved region 7472:11157 - closest 3' read 575148 ( +375) 7097:15015 ( +3858) search for confused edges: discard region 7472:11157 - no confusion in best edges Annotating repeats in reads for tig 539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 542/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2833:3449 - contained in read 50535 59- 7216 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 543/113047. Annotated with 166 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 32315:36377 - closest 5' read 17173 ( +8150) 24165:33315 ( -3062) saved region 32315:36377 - closest 3' read 234109 ( -237) 32552:39918 ( +3541) search for confused edges: discard region 32315:36377 - no confusion in best edges Annotating repeats in reads for tig 545/113047. Annotated with 179 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1511:10032 - closest read 367893 ( +873) 638:10032 ( +0) (contained) saved region 1511:10032 - closest 5' read 367893 ( +873) 638:10032 ( +0) saved region 1511:10032 - closest 3' read 367893 ( +873) 638:10032 ( +0) saved region 26336:27665 - closest read 444127 ( +6168) 20168:27665 ( +0) (contained) saved region 26336:27665 - closest read 444131 ( +5396) 20940:27667 ( +2) (contained) saved region 26336:27665 - closest 5' read 444131 ( +5396) 20940:27667 ( +2) saved region 26336:27665 - closest 3' read 444127 ( +6168) 20168:27665 ( +0) saved region 31175:37376 - closest 5' read 722901 ( +0) 31175:36702 ( -674) saved region 31175:37376 - closest 3' read 131150 ( -3) 31178:43241 ( +5865) search for confused edges: tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 423973 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 749 erate 0.0534 score 709.00 - absdiff 6917.92 percdiff 165.9784 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 423974 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 747 erate 0.0473 score 711.67 - absdiff 6915.26 percdiff 165.8615 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 423976 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 750 erate 0.0467 score 714.98 - absdiff 6911.95 percdiff 165.7164 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 429605 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 857 erate 0.0385 score 824.01 - absdiff 6802.92 percdiff 160.9981 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 467258 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 950 erate 0.0619 score 891.20 - absdiff 6735.73 percdiff 158.1506 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 114407 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 1261 erate 0.0342 score 1217.87 - absdiff 5367.95 percdiff 137.5745 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 114408 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 1263 erate 0.0538 score 1195.05 - absdiff 5390.77 percdiff 138.5647 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 423973 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 767 erate 0.0404 score 736.01 - absdiff 5849.81 percdiff 159.7908 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 423974 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 765 erate 0.0356 score 737.77 - absdiff 5848.05 percdiff 159.7047 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 423976 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 768 erate 0.0339 score 741.96 - absdiff 5843.86 percdiff 159.4985 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 429605 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 875 erate 0.0229 score 854.96 - absdiff 5730.86 percdiff 154.0391 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 467258 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 970 erate 0.0423 score 928.97 - absdiff 5656.85 percdiff 150.5525 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 178831 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 2057 erate 0.0185 score 2018.95 - absdiff 3397.92 percdiff 91.3934 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 178832 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 2629 erate 0.0252 score 2562.75 - absdiff 2854.12 percdiff 71.5352 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 338793 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 1134 erate 0.0413 score 1087.17 - absdiff 4329.70 percdiff 133.1390 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 412760 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 3131 erate 0.0351 score 3021.10 - absdiff 2395.76 percdiff 56.7853 discard region 1511:10032 - no confusion in best edges discard region 26336:27665 - no confusion in best edges discard region 31175:37376 - no confusion in best edges Annotating repeats in reads for tig 549/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5320:10019 - closest read 516267 ( +3326) 1994:10019 ( +0) (contained) saved region 5320:10019 - closest read 415796 ( +137) 5183:13552 ( +3533) (contained) saved region 5320:10019 - closest read 415797 ( +95) 5225:13556 ( +3537) (contained) saved region 5320:10019 - closest read 415795 ( +7) 5313:13555 ( +3536) (contained) saved region 5320:10019 - closest 5' read 415797 ( +95) 5225:13556 ( +3537) saved region 5320:10019 - closest 3' read 516267 ( +3326) 1994:10019 ( +0) search for confused edges: discard region 5320:10019 - no confusion in best edges Annotating repeats in reads for tig 551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 553/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 563/113047. Annotated with 368 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9842:18393 - closest 5' read 632050 ( +3109) 6733:17840 ( -553) saved region 9842:18393 - closest 3' read 667397 ( -1886) 11728:21977 ( +3584) search for confused edges: discard region 9842:18393 - no confusion in best edges Annotating repeats in reads for tig 564/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13213:13958 - contained in read 600255 3310- 14555 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 570/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 22057:23329 - contained in read 503588 15235- 23329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 573/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 0:4198 - contained in read 240981 0- 10198 discard region 5398:4671 - contained in read 240981 0- 10198 discard region 15306:19992 - contained in read 606979 9369- 24954 thickest edges to the repeat regions: saved region 29334:30065 - closest read 32196 ( +2630) 26704:30065 ( +0) (contained) saved region 29334:30065 - closest 5' read 32196 ( +2630) 26704:30065 ( +0) saved region 29334:30065 - closest 3' read 32196 ( +2630) 26704:30065 ( +0) search for confused edges: discard region 29334:30065 - no confusion in best edges Annotating repeats in reads for tig 574/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 14218:18855 - contained in read 551307 8438- 18855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 576/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8902:16864 - closest 5' read 24203 ( +1936) 6966:16211 ( -653) saved region 8902:16864 - closest 3' read 238081 ( -2687) 11589:16976 ( +112) search for confused edges: discard region 8902:16864 - no confusion in best edges Annotating repeats in reads for tig 591/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 6311:9037 - contained in read 571358 2991- 9037 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 592/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4913:6268 - closest 5' read 269646 ( +4886) 27:6084 ( -184) saved region 4913:6268 - closest 3' read 504369 ( -435) 5348:12992 ( +6724) search for confused edges: discard region 4913:6268 - no confusion in best edges Annotating repeats in reads for tig 598/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 27120:28169 - contained in read 430032 24365- 31355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 602/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4742:10701 - closest 5' read 547415 ( +4319) 423:10265 ( -436) saved region 4742:10701 - closest 3' read 631950 ( -1608) 6350:12197 ( +1496) search for confused edges: tig 602 read 631950 pos 6350-12197 IS confused by 5' edge to read 517745 - best edge read 547415 len 3863 erate 0.0151 score 3804.67 - alt edge len 3528 erate 0.0145 score 3476.84 - absdiff 327.82 percdiff 9.0043 saved region 4742:10701 - 1 best edges are potentially confused break tig 602 into up to 3 pieces: 0 4242 unique (length 4242) 4242 11201 repeat (length 6959) 11201 12215 unique (length 1014) Creating Unitig 113275 Creating Unitig 113276 Creating Unitig 113277 For tig 602 unique region 0 4242 - 0/ 11 reads repeat/unique - unitig 113275 created. For tig 602 repeat region 4242 11201 - 13/ 0 reads repeat/unique - unitig 113276 created. For tig 602 unique region 11201 12215 - 0/ 4 reads repeat/unique - unitig 113277 created. Annotating repeats in reads for tig 608/113047. Annotated with 608 overlaps. Scan reads to discard spanned repeats. discard region 0:1258 - contained in read 657197 0- 7136 discard region 11177:11695 - contained in read 347499 5335- 12952 thickest edges to the repeat regions: saved region 13395:20209 - closest 5' read 491920 ( +854) 12541:19092 ( -1117) saved region 13395:20209 - closest 3' read 628925 ( -324) 13719:21550 ( +1341) saved region 21379:25775 - closest 5' read 406523 ( +3732) 17647:23350 ( -2425) saved region 21379:25775 - closest 3' read 450243 ( -47) 21426:31659 ( +5884) search for confused edges: tig 608 read 616815 pos 11153-17636 NOT confused by 3' edge to read 51901 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 1188 erate 0.0675 score 1107.81 - absdiff 2553.18 percdiff 107.0785 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 94998 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 3848 erate 0.0541 score 3639.82 - absdiff 21.16 percdiff 0.5798 tig 608 read 616815 pos 11153-17636 NOT confused by 3' edge to read 110294 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 1557 erate 0.0597 score 1464.05 - absdiff 2196.94 percdiff 85.7337 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 121352 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2631 erate 0.0433 score 2517.08 - absdiff 1143.91 percdiff 37.0313 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 243906 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2645 erate 0.0598 score 2486.83 - absdiff 1174.16 percdiff 38.1976 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 498841 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2841 erate 0.0429 score 2719.12 - absdiff 941.87 percdiff 29.5251 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 498843 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2814 erate 0.0459 score 2684.84 - absdiff 976.15 percdiff 30.7651 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 588779 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2218 erate 0.0595 score 2086.03 - absdiff 1574.96 percdiff 54.8096 tig 608 read 406523 pos 17647-23350 IS confused by 3' edge to read 590625 - best edge read 450243 len 1951 erate 0.0551 score 1843.50 - alt edge len 1401 erate 0.0642 score 1311.06 - absdiff 532.44 percdiff 33.7572 saved region 13395:20209 - 6 best edges are potentially confused saved region 21379:25775 - 1 best edges are potentially confused break tig 608 into up to 5 pieces: 0 12895 unique (length 12895) 12895 20709 repeat (length 7814) 20709 20879 unique (length 170) 20879 26275 repeat (length 5396) 26275 33557 unique (length 7282) Creating Unitig 113278 Creating Unitig 113279 Creating Unitig 113280 Creating Unitig 113281 Creating Unitig 113282 For tig 608 unique region 0 12895 - 0/ 12 reads repeat/unique - unitig 113278 created. For tig 608 repeat region 12895 20709 - 49/ 0 reads repeat/unique - unitig 113279 created. For tig 608 unique region 20709 20879 - 0/ 11 reads repeat/unique - unitig 113280 created. For tig 608 repeat region 20879 26275 - 1/ 0 reads repeat/unique - unitig 113282 created. For tig 608 unique region 26275 33557 - 0/ 18 reads repeat/unique - unitig 113281 created. Annotating repeats in reads for tig 609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 612/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 10146:10739 - contained in read 135278 6126- 14043 thickest edges to the repeat regions: saved region 11263:18705 - closest 5' read 374807 ( +3020) 8243:17034 ( -1671) saved region 11263:18705 - closest 3' read 557358 ( -647) 11910:23231 ( +4526) search for confused edges: tig 612 read 135280 pos 6141-14074 IS confused by 3' edge to read 114617 - best edge read 557358 len 2151 erate 0.0098 score 2129.92 - alt edge len 683 erate 0.0176 score 670.98 - absdiff 1458.94 percdiff 104.1766 tig 612 read 135280 pos 6141-14074 IS confused by 3' edge to read 114618 - best edge read 557358 len 2151 erate 0.0098 score 2129.92 - alt edge len 671 erate 0.0135 score 661.94 - absdiff 1467.98 percdiff 105.1613 saved region 11263:18705 - 2 best edges are potentially confused break tig 612 into up to 3 pieces: 0 10763 unique (length 10763) 10763 19205 repeat (length 8442) 19205 27763 unique (length 8558) Creating Unitig 113283 Creating Unitig 113284 Creating Unitig 113285 For tig 612 unique region 0 10763 - 0/ 17 reads repeat/unique - unitig 113283 created. For tig 612 repeat region 10763 19205 - 12/ 0 reads repeat/unique - unitig 113284 created. For tig 612 unique region 19205 27763 - 0/ 17 reads repeat/unique - unitig 113285 created. Annotating repeats in reads for tig 613/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:3118 - contained in read 672224 0- 5979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 616/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 8512:11202 - contained in read 676365 5029- 11202 thickest edges to the repeat regions: saved region 4396:5655 - closest read 587509 ( +4099) 297:5655 ( +0) (contained) saved region 4396:5655 - closest 5' read 587509 ( +4099) 297:5655 ( +0) saved region 4396:5655 - closest 3' read 587509 ( +4099) 297:5655 ( +0) search for confused edges: discard region 4396:5655 - no confusion in best edges Annotating repeats in reads for tig 619/113047. Annotated with 246 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10230:21767 - closest 5' read 96077 ( +0) 10230:16258 ( -5509) saved region 10230:21767 - closest 3' read 623947 ( -4060) 14290:22231 ( +464) search for confused edges: tig 619 read 96073 pos 10471-16674 IS confused by 5' edge to read 47237 - best edge read 623947 len 1888 erate 0.0621 score 1770.76 - alt edge len 1883 erate 0.0555 score 1778.49 - absdiff 7.74 percdiff 0.4361 tig 619 read 96073 pos 10471-16674 IS confused by 5' edge to read 708595 - best edge read 623947 len 1888 erate 0.0621 score 1770.76 - alt edge len 602 erate 0.0714 score 559.02 - absdiff 1211.74 percdiff 104.0220 saved region 10230:21767 - 2 best edges are potentially confused break tig 619 into up to 3 pieces: 0 9730 unique (length 9730) 9730 22267 repeat (length 12537) 22267 27947 unique (length 5680) Creating Unitig 113286 Creating Unitig 113287 Creating Unitig 113288 For tig 619 unique region 0 9730 - 0/ 15 reads repeat/unique - unitig 113286 created. For tig 619 repeat region 9730 22267 - 18/ 0 reads repeat/unique - unitig 113287 created. For tig 619 unique region 22267 27947 - 0/ 7 reads repeat/unique - unitig 113288 created. Annotating repeats in reads for tig 621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 623/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3198:8705 - contained in read 715268 0- 11274 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 624/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 3962:4834 - contained in read 721147 0- 6534 discard region 5801:4982 - contained in read 721147 0- 6534 discard region 6050:6873 - contained in read 709809 399- 8904 thickest edges to the repeat regions: saved region 10418:19607 - closest 5' read 307455 ( +0) 10418:18797 ( -810) saved region 10418:19607 - closest 3' read 465084 ( -932) 11350:21958 ( +2351) saved region 19828:24746 - closest read 117382 ( +434) 19394:28179 ( +3433) (contained) saved region 19828:24746 - closest 5' read 117382 ( +434) 19394:28179 ( +3433) saved region 19828:24746 - closest 3' read 117382 ( +434) 19394:28179 ( +3433) search for confused edges: discard region 10418:19607 - no confusion in best edges discard region 19828:24746 - no confusion in best edges Annotating repeats in reads for tig 630/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 1391:5505 - contained in read 674269 107- 7673 discard region 18932:20018 - contained in read 247650 12039- 21753 thickest edges to the repeat regions: saved region 12039:18902 - closest read 247650 ( +0) 12039:21753 ( +2851) (contained) saved region 12039:18902 - closest 5' read 247650 ( +0) 12039:21753 ( +2851) saved region 12039:18902 - closest 3' read 247650 ( +0) 12039:21753 ( +2851) search for confused edges: discard region 12039:18902 - no confusion in best edges Annotating repeats in reads for tig 632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 640/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 641/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 642/113047. Annotated with 489 overlaps. Scan reads to discard spanned repeats. discard region 1729:3238 - contained in read 573753 0- 8180 discard region 9911:11116 - contained in read 76741 5790- 13276 discard region 20781:21867 - contained in read 503631 19171- 23258 thickest edges to the repeat regions: saved region 3660:8530 - closest 5' read 573754 ( +3324) 336:8517 ( -13) saved region 3660:8530 - closest 3' read 376556 ( -930) 4590:8530 ( +0) saved region 11427:19450 - closest 5' read 564119 ( +1959) 9468:18627 ( -823) saved region 11427:19450 - closest 3' read 118290 ( -4455) 15882:19784 ( +334) search for confused edges: discard region 3660:8530 - no confusion in best edges discard region 11427:19450 - no confusion in best edges Annotating repeats in reads for tig 644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 647/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16411:17056 - closest read 143653 ( +8337) 8074:17313 ( +257) (contained) saved region 16411:17056 - closest read 413021 ( +6083) 10328:17056 ( +0) (contained) saved region 16411:17056 - closest 5' read 143653 ( +8337) 8074:17313 ( +257) saved region 16411:17056 - closest 3' read 143653 ( +8337) 8074:17313 ( +257) search for confused edges: discard region 16411:17056 - no confusion in best edges Annotating repeats in reads for tig 648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 653/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:1642 - contained in read 632299 0- 5907 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 658/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10433:16238 - closest 5' read 118574 (+10433) 0:14544 ( -1694) saved region 10433:16238 - closest 3' read 357786 ( -107) 10540:17306 ( +1068) search for confused edges: tig 658 read 118574 pos 0-14544 NOT confused by 3' edge to read 661490 - best edge read 357786 len 3919 erate 0.0681 score 3652.12 - alt edge len 513 erate 0.0703 score 476.94 - absdiff 3175.18 percdiff 153.7970 tig 658 read 118574 pos 0-14544 NOT confused by 3' edge to read 687739 - best edge read 357786 len 3919 erate 0.0681 score 3652.12 - alt edge len 522 erate 0.0691 score 485.93 - absdiff 3166.19 percdiff 153.0281 tig 658 read 118574 pos 0-14544 NOT confused by 3' edge to read 687740 - best edge read 357786 len 3919 erate 0.0681 score 3652.12 - alt edge len 522 erate 0.0653 score 487.91 - absdiff 3164.20 percdiff 152.8589 discard region 10433:16238 - no confusion in best edges Annotating repeats in reads for tig 661/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2447:3008 - contained in read 138034 0- 5103 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 663/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1155:13307 - closest 5' read 142579 ( +1155) 0:10624 ( -2683) saved region 1155:13307 - closest 3' read 211233 ( -2709) 3864:13307 ( +0) search for confused edges: tig 663 read 142579 pos 0-10624 NOT confused by 3' edge to read 287067 - best edge read 211233 len 6659 erate 0.0234 score 6503.18 - alt edge len 3186 erate 0.0273 score 3099.02 - absdiff 3404.16 percdiff 70.9037 tig 663 read 142579 pos 0-10624 NOT confused by 3' edge to read 295107 - best edge read 211233 len 6659 erate 0.0234 score 6503.18 - alt edge len 3277 erate 0.0211 score 3207.86 - absdiff 3295.32 percdiff 67.8676 tig 663 read 142579 pos 0-10624 IS confused by 3' edge to read 534111 - best edge read 211233 len 6659 erate 0.0234 score 6503.18 - alt edge len 4581 erate 0.0223 score 4478.84 - absdiff 2024.34 percdiff 36.8664 saved region 1155:13307 - 1 best edges are potentially confused break tig 663 into up to 2 pieces: 0 655 unique (length 655) 655 13307 repeat (length 12652) Creating Unitig 113289 Creating Unitig 113290 For tig 663 unique region 0 655 - 0/ 1 reads repeat/unique - unitig 113289 created. For tig 663 repeat region 655 13307 - 12/ 0 reads repeat/unique - unitig 113290 created. Annotating repeats in reads for tig 664/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 24490:25668 - contained in read 660966 20838- 32008 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 667/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 23055:27099 - closest 5' read 506220 ( +6191) 16864:26058 ( -1041) saved region 23055:27099 - closest 3' read 711730 ( -1) 23056:27099 ( +0) search for confused edges: tig 667 read 506221 pos 16859-26010 IS confused by 5' edge to read 54021 - best edge read 54514 len 2895 erate 0.0629 score 2712.90 - alt edge len 2258 erate 0.0717 score 2096.10 - absdiff 616.80 percdiff 25.6520 tig 667 read 506221 pos 16859-26010 IS confused by 5' edge to read 71427 - best edge read 54514 len 2895 erate 0.0629 score 2712.90 - alt edge len 1882 erate 0.0682 score 1753.65 - absdiff 959.26 percdiff 42.9529 tig 667 read 506221 pos 16859-26010 IS confused by 5' edge to read 182568 - best edge read 54514 len 2895 erate 0.0629 score 2712.90 - alt edge len 2257 erate 0.0622 score 2116.61 - absdiff 596.29 percdiff 24.6936 saved region 23055:27099 - 3 best edges are potentially confused break tig 667 into up to 3 pieces: 0 22555 unique (length 22555) 22555 27599 repeat (length 5044) 27599 32398 unique (length 4799) Creating Unitig 113291 Creating Unitig 113292 Creating Unitig 113293 For tig 667 unique region 0 22555 - 0/ 42 reads repeat/unique - unitig 113291 created. For tig 667 repeat region 22555 27599 - 20/ 0 reads repeat/unique - unitig 113292 created. For tig 667 unique region 27599 32398 - 0/ 2 reads repeat/unique - unitig 113293 created. Annotating repeats in reads for tig 670/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14029:15070 - closest read 444642 ( +6191) 7838:15070 ( +0) (contained) saved region 14029:15070 - closest read 253889 ( +207) 13822:20576 ( +5506) (contained) saved region 14029:15070 - closest read 253890 ( +203) 13826:19463 ( +4393) (contained) saved region 14029:15070 - closest 5' read 253889 ( +207) 13822:20576 ( +5506) saved region 14029:15070 - closest 3' read 444642 ( +6191) 7838:15070 ( +0) search for confused edges: discard region 14029:15070 - no confusion in best edges Annotating repeats in reads for tig 671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 672/113047. Annotated with 123 overlaps. Scan reads to discard spanned repeats. discard region 0:2153 - contained in read 587281 0- 19663 discard region 20421:21110 - contained in read 474316 16164- 22869 discard region 23829:26053 - contained in read 19688 20737- 27276 thickest edges to the repeat regions: saved region 3301:20428 - closest 5' read 587281 ( +3301) 0:19663 ( -765) saved region 3301:20428 - closest 3' read 640311 ( -2341) 5642:20532 ( +104) search for confused edges: tig 672 read 587281 pos 0-19663 NOT confused by 3' edge to read 363181 - best edge read 249123 len 8045 erate 0.0274 score 7824.57 - alt edge len 3970 erate 0.0232 score 3877.90 - absdiff 3946.67 percdiff 67.4503 tig 672 read 587281 pos 0-19663 NOT confused by 3' edge to read 363183 - best edge read 249123 len 8045 erate 0.0274 score 7824.57 - alt edge len 3929 erate 0.0227 score 3839.81 - absdiff 3984.76 percdiff 68.3235 tig 672 read 249123 pos 12030-20507 NOT confused by 3' edge to read 376338 - best edge read 587281 len 8000 erate 0.0274 score 7780.80 - alt edge len 1564 erate 0.0700 score 1454.52 - absdiff 6326.28 percdiff 137.0019 tig 672 read 249123 pos 12030-20507 NOT confused by 3' edge to read 518441 - best edge read 587281 len 8000 erate 0.0274 score 7780.80 - alt edge len 1574 erate 0.0731 score 1458.94 - absdiff 6321.86 percdiff 136.8406 tig 672 read 249123 pos 12030-20507 NOT confused by 3' edge to read 518444 - best edge read 587281 len 8000 erate 0.0274 score 7780.80 - alt edge len 912 erate 0.0713 score 846.97 - absdiff 6933.83 percdiff 160.7327 discard region 3301:20428 - no confusion in best edges Annotating repeats in reads for tig 673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 685/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17409:19553 - contained in read 408186 10947- 23775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 686/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 913:2814 - contained in read 232258 0- 6972 thickest edges to the repeat regions: saved region 5425:8472 - closest 5' read 419342 ( +91) 5334:8178 ( -294) saved region 5425:8472 - closest 3' read 79028 ( -147) 5572:8959 ( +487) search for confused edges: tig 686 read 419342 pos 5334-8178 IS confused by 5' edge to read 40225 - best edge read 79028 len 2551 erate 0.0501 score 2423.19 - alt edge len 1086 erate 0.0373 score 1045.49 - absdiff 1377.70 percdiff 79.4366 tig 686 read 79028 pos 5572-8959 IS confused by 5' edge to read 509908 - best edge read 419342 len 2581 erate 0.0501 score 2451.69 - alt edge len 831 erate 0.0630 score 778.65 - absdiff 1673.04 percdiff 103.5832 saved region 5425:8472 - 2 best edges are potentially confused break tig 686 into up to 3 pieces: 0 4925 unique (length 4925) 4925 8972 repeat (length 4047) 8972 14968 unique (length 5996) Creating Unitig 113294 Creating Unitig 113295 Creating Unitig 113296 For tig 686 unique region 0 4925 - 0/ 7 reads repeat/unique - unitig 113294 created. For tig 686 repeat region 4925 8972 - 7/ 0 reads repeat/unique - unitig 113295 created. For tig 686 unique region 8972 14968 - 0/ 3 reads repeat/unique - unitig 113296 created. Annotating repeats in reads for tig 687/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12934:13742 - closest read 118129 ( +0) 12934:16343 ( +2601) (contained) saved region 12934:13742 - closest 5' read 118129 ( +0) 12934:16343 ( +2601) saved region 12934:13742 - closest 3' read 118129 ( +0) 12934:16343 ( +2601) search for confused edges: discard region 12934:13742 - no confusion in best edges Annotating repeats in reads for tig 688/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 9562:10785 - contained in read 557262 2262- 11433 discard region 13686:15939 - contained in read 81186 9175- 17662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 696/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 17103:18154 - contained in read 101083 9260- 18892 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 701/113047. Annotated with 72 overlaps. Scan reads to discard spanned repeats. discard region 21452:24346 - contained in read 674096 14932- 26110 discard region 27492:28760 - contained in read 276330 24629- 31207 thickest edges to the repeat regions: saved region 11410:15605 - closest read 610480 ( +2314) 9096:15605 ( +0) (contained) saved region 11410:15605 - closest 5' read 610480 ( +2314) 9096:15605 ( +0) saved region 11410:15605 - closest 3' read 610480 ( +2314) 9096:15605 ( +0) search for confused edges: discard region 11410:15605 - no confusion in best edges Annotating repeats in reads for tig 702/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 703/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 8403:10940 - contained in read 420816 4357- 10940 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 708/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:4269 - contained in read 17730 0- 14659 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 711/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 17938:18942 - contained in read 605005 14636- 20390 thickest edges to the repeat regions: saved region 1809:6401 - closest 5' read 676581 ( +1633) 176:6269 ( -132) saved region 1809:6401 - closest 3' read 605643 ( -400) 2209:6401 ( +0) search for confused edges: tig 711 read 676581 pos 176-6269 IS confused by 5' edge to read 709170 - best edge read 93646 len 4035 erate 0.0485 score 3839.30 - alt edge len 3112 erate 0.0125 score 3073.10 - absdiff 766.20 percdiff 22.1689 tig 711 read 676581 pos 176-6269 IS confused by 5' edge to read 709173 - best edge read 93646 len 4035 erate 0.0485 score 3839.30 - alt edge len 3105 erate 0.0116 score 3068.98 - absdiff 770.32 percdiff 22.3014 saved region 1809:6401 - 2 best edges are potentially confused break tig 711 into up to 3 pieces: 0 1309 unique (length 1309) 1309 6901 repeat (length 5592) 6901 26894 unique (length 19993) Creating Unitig 113297 Creating Unitig 113298 Creating Unitig 113299 For tig 711 unique region 0 1309 - 0/ 3 reads repeat/unique - unitig 113297 created. For tig 711 repeat region 1309 6901 - 16/ 0 reads repeat/unique - unitig 113298 created. For tig 711 unique region 6901 26894 - 0/ 51 reads repeat/unique - unitig 113299 created. Annotating repeats in reads for tig 712/113047. Annotated with 374 overlaps. Scan reads to discard spanned repeats. discard region 0:5843 - contained in read 701936 0- 10605 discard region 6133:7616 - contained in read 701936 0- 10605 discard region 8322:11347 - contained in read 483866 4635- 12334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 713/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6037:7096 - contained in read 477145 432- 7917 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 715/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 15140:16230 - contained in read 505550 10439- 19031 thickest edges to the repeat regions: saved region 9123:10890 - closest read 483130 ( +0) 9123:15496 ( +4606) (contained) saved region 9123:10890 - closest 5' read 483130 ( +0) 9123:15496 ( +4606) saved region 9123:10890 - closest 3' read 483130 ( +0) 9123:15496 ( +4606) search for confused edges: tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 131715 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1698 erate 0.0432 score 1624.65 - absdiff 32.85 percdiff 2.0427 tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 169588 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1699 erate 0.0644 score 1589.58 - absdiff 2.21 percdiff 0.1390 tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 340700 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1244 erate 0.0632 score 1165.38 - absdiff 426.42 percdiff 30.9314 tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 643997 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1697 erate 0.0497 score 1612.66 - absdiff 20.86 percdiff 1.3021 saved region 9123:10890 - 4 best edges are potentially confused break tig 715 into up to 3 pieces: 0 8623 unique (length 8623) 8623 11390 repeat (length 2767) 11390 40583 unique (length 29193) Creating Unitig 113300 Creating Unitig 113301 Creating Unitig 113302 For tig 715 unique region 0 8623 - 0/ 11 reads repeat/unique - unitig 113300 created. For tig 715 repeat region 8623 11390 - 9/ 0 reads repeat/unique - unitig 113302 created. For tig 715 unique region 11390 40583 - 0/ 39 reads repeat/unique - unitig 113301 created. Annotating repeats in reads for tig 721/113047. Annotated with 86 overlaps. Scan reads to discard spanned repeats. discard region 4329:9635 - contained in read 113383 1188- 16676 discard region 21317:24679 - contained in read 341730 15484- 27065 thickest edges to the repeat regions: saved region 25643:29023 - closest read 86347 ( +4302) 21341:29214 ( +191) (contained) saved region 25643:29023 - closest read 86348 ( +2845) 22798:29213 ( +190) (contained) saved region 25643:29023 - closest 5' read 86347 ( +4302) 21341:29214 ( +191) saved region 25643:29023 - closest 3' read 86347 ( +4302) 21341:29214 ( +191) search for confused edges: discard region 25643:29023 - no confusion in best edges Annotating repeats in reads for tig 725/113047. Annotated with 127 overlaps. Scan reads to discard spanned repeats. discard region 3948:11283 - contained in read 452242 3117- 11877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 726/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3267:8 - contained in read 362739 0- 6706 discard region 8713:15082 - contained in read 543464 8153- 15686 discard region 22388:24406 - contained in read 597845 19623- 25000 discard region 25204:26563 - contained in read 90056 20872- 27643 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 727/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2706:5421 - contained in read 190812 0- 6181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 730/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 12236:15002 - contained in read 158306 7926- 17875 discard region 21127:22000 - contained in read 442903 15133- 22984 thickest edges to the repeat regions: saved region 6055:7992 - closest read 695183 ( +12) 6043:14298 ( +6306) (contained) saved region 6055:7992 - closest read 103012 ( +8) 6047:8183 ( +191) (contained) saved region 6055:7992 - closest read 214761 ( +7) 6048:15015 ( +7023) (contained) saved region 6055:7992 - closest read 655429 ( +3) 6052:13932 ( +5940) (contained) saved region 6055:7992 - closest 5' read 214761 ( +7) 6048:15015 ( +7023) saved region 6055:7992 - closest 3' read 695183 ( +12) 6043:14298 ( +6306) search for confused edges: discard region 6055:7992 - no confusion in best edges Annotating repeats in reads for tig 732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 737/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 9567:13738 - contained in read 453725 5195- 14964 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 738/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 8662:10025 - contained in read 236256 4224- 13621 discard region 25116:29169 - contained in read 163124 24127- 29169 thickest edges to the repeat regions: saved region 21265:23037 - closest read 629020 ( +0) 21265:27305 ( +4268) (contained) saved region 21265:23037 - closest 5' read 629020 ( +0) 21265:27305 ( +4268) saved region 21265:23037 - closest 3' read 629020 ( +0) 21265:27305 ( +4268) search for confused edges: tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 118750 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 656 erate 0.0521 score 621.82 - absdiff 946.14 percdiff 86.4142 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 128046 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 610 erate 0.0613 score 572.61 - absdiff 995.36 percdiff 92.9993 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 272629 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 788 erate 0.0500 score 748.60 - absdiff 819.37 percdiff 70.7397 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 284605 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1350 erate 0.0720 score 1252.80 - absdiff 315.17 percdiff 22.3462 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 317609 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 910 erate 0.0533 score 861.50 - absdiff 706.47 percdiff 58.1585 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 378204 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 715 erate 0.0707 score 664.45 - absdiff 903.52 percdiff 80.9452 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 378206 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 726 erate 0.0641 score 679.46 - absdiff 888.50 percdiff 79.0684 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 378207 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 733 erate 0.0657 score 684.84 - absdiff 883.12 percdiff 78.4021 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 383776 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1101 erate 0.0521 score 1043.64 - absdiff 524.33 percdiff 40.1537 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 456464 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1213 erate 0.0348 score 1170.79 - absdiff 397.18 percdiff 29.0043 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 459946 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1163 erate 0.0415 score 1114.74 - absdiff 453.23 percdiff 33.7891 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 459947 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1164 erate 0.0424 score 1114.65 - absdiff 453.32 percdiff 33.7969 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 489695 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1102 erate 0.0392 score 1058.80 - absdiff 509.16 percdiff 38.7674 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 489698 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1101 erate 0.0336 score 1064.01 - absdiff 503.96 percdiff 38.2952 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 535887 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 838 erate 0.0434 score 801.63 - absdiff 766.34 percdiff 64.6807 saved region 21265:23037 - 15 best edges are potentially confused break tig 738 into up to 3 pieces: 0 20765 unique (length 20765) 20765 23537 repeat (length 2772) 23537 29169 unique (length 5632) Creating Unitig 113303 Creating Unitig 113304 Creating Unitig 113305 For tig 738 unique region 0 20765 - 0/ 40 reads repeat/unique - unitig 113303 created. For tig 738 repeat region 20765 23537 - 3/ 0 reads repeat/unique - unitig 113305 created. For tig 738 unique region 23537 29169 - 0/ 19 reads repeat/unique - unitig 113304 created. Annotating repeats in reads for tig 748/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 8401:13518 - contained in read 522359 7635- 17032 discard region 14573:16712 - contained in read 346118 13434- 20746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 749/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14469:20165 - closest 5' read 550283 (+10000) 4469:16950 ( -3215) saved region 14469:20165 - closest 3' read 250138 ( -580) 15049:26825 ( +6660) search for confused edges: tig 749 read 550283 pos 4469-16950 IS confused by 5' edge to read 597983 - best edge read 250139 len 1869 erate 0.0599 score 1757.05 - alt edge len 1043 erate 0.0416 score 999.61 - absdiff 757.44 percdiff 54.9532 tig 749 read 250139 pos 15056-26811 IS confused by 3' edge to read 62998 - best edge read 550283 len 1908 erate 0.0599 score 1793.71 - alt edge len 1244 erate 0.0732 score 1152.94 - absdiff 640.77 percdiff 43.4915 tig 749 read 250139 pos 15056-26811 IS confused by 3' edge to read 183287 - best edge read 550283 len 1908 erate 0.0599 score 1793.71 - alt edge len 955 erate 0.0593 score 898.37 - absdiff 895.34 percdiff 66.5168 tig 749 read 250139 pos 15056-26811 IS confused by 3' edge to read 358697 - best edge read 550283 len 1908 erate 0.0599 score 1793.71 - alt edge len 3529 erate 0.0456 score 3368.08 - absdiff 1574.37 percdiff 61.0008 saved region 14469:20165 - 4 best edges are potentially confused break tig 749 into up to 3 pieces: 0 13969 unique (length 13969) 13969 20665 repeat (length 6696) 20665 40958 unique (length 20293) Creating Unitig 113306 Creating Unitig 113307 Creating Unitig 113308 For tig 749 unique region 0 13969 - 0/ 5 reads repeat/unique - unitig 113306 created. For tig 749 repeat region 13969 20665 - 2/ 0 reads repeat/unique - unitig 113307 created. For tig 749 unique region 20665 40958 - 0/ 46 reads repeat/unique - unitig 113308 created. Annotating repeats in reads for tig 752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 760/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 7745:9893 - contained in read 632098 6082- 14081 discard region 12365:17545 - contained in read 468220 9376- 18626 thickest edges to the repeat regions: saved region 21374:23561 - closest 5' read 365618 ( +0) 21374:23519 ( -42) saved region 21374:23561 - closest 3' read 289702 ( -8) 21382:23588 ( +27) search for confused edges: discard region 21374:23561 - no confusion in best edges Annotating repeats in reads for tig 769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 771/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17699:22009 - closest read 290306 ( +0) 17699:26678 ( +4669) (contained) saved region 17699:22009 - closest 5' read 290306 ( +0) 17699:26678 ( +4669) saved region 17699:22009 - closest 3' read 290306 ( +0) 17699:26678 ( +4669) search for confused edges: tig 771 read 674865 pos 15453-21931 NOT confused by 3' edge to read 15296 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 694 erate 0.0738 score 642.78 - absdiff 3265.09 percdiff 143.4998 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 72949 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 3423 erate 0.0526 score 3242.95 - absdiff 664.93 percdiff 18.5972 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 292478 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 4029 erate 0.0510 score 3823.52 - absdiff 84.36 percdiff 2.1821 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 426187 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 4030 erate 0.0520 score 3820.44 - absdiff 87.44 percdiff 2.2627 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 543427 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 4028 erate 0.0393 score 3869.70 - absdiff 38.18 percdiff 0.9817 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 614625 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 2365 erate 0.0423 score 2264.96 - absdiff 1642.92 percdiff 53.2305 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 614626 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 2366 erate 0.0338 score 2286.03 - absdiff 1621.85 percdiff 52.3691 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 702147 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 3578 erate 0.0574 score 3372.62 - absdiff 535.25 percdiff 14.7038 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 702149 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 3573 erate 0.0477 score 3402.57 - absdiff 505.31 percdiff 13.8243 saved region 17699:22009 - 8 best edges are potentially confused break tig 771 into up to 3 pieces: 0 17199 unique (length 17199) 17199 22509 repeat (length 5310) 22509 27706 unique (length 5197) Creating Unitig 113309 Creating Unitig 113310 Creating Unitig 113311 For tig 771 unique region 0 17199 - 0/ 27 reads repeat/unique - unitig 113309 created. For tig 771 repeat region 17199 22509 - 7/ 0 reads repeat/unique - unitig 113311 created. For tig 771 unique region 22509 27706 - 0/ 7 reads repeat/unique - unitig 113310 created. Annotating repeats in reads for tig 779/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3196:0 - contained in read 152903 0- 7701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 782/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 784/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:5781 - contained in read 39463 0- 7095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 790/113047. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 16838:22394 - contained in read 258718 13073- 24756 discard region 24338:26454 - contained in read 684250 20380- 30166 thickest edges to the repeat regions: saved region 8821:16832 - closest 5' read 421039 ( +1774) 7047:16386 ( -446) saved region 8821:16832 - closest 3' read 179717 ( -586) 9407:21466 ( +4634) saved region 26900:32379 - closest 5' read 154914 ( +2562) 24338:32363 ( -16) saved region 26900:32379 - closest 3' read 551863 ( -2058) 28958:33739 ( +1360) search for confused edges: discard region 8821:16832 - no confusion in best edges discard region 26900:32379 - no confusion in best edges Annotating repeats in reads for tig 793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 795/113047. Annotated with 122 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21399:30750 - closest 5' read 385418 ( +0) 21399:29597 ( -1153) saved region 21399:30750 - closest 3' read 602064 ( -1880) 23279:30998 ( +248) search for confused edges: tig 795 read 385418 pos 21399-29597 IS confused by 5' edge to read 323974 - best edge read 54449 len 7311 erate 0.0193 score 7169.90 - alt edge len 5371 erate 0.0335 score 5191.07 - absdiff 1978.83 percdiff 32.0173 tig 795 read 385418 pos 21399-29597 IS confused by 5' edge to read 323976 - best edge read 54449 len 7311 erate 0.0193 score 7169.90 - alt edge len 5368 erate 0.0291 score 5211.79 - absdiff 1958.11 percdiff 31.6291 tig 795 read 385418 pos 21399-29597 IS confused by 5' edge to read 502457 - best edge read 54449 len 7311 erate 0.0193 score 7169.90 - alt edge len 7242 erate 0.0231 score 7074.71 - absdiff 95.19 percdiff 1.3365 tig 795 read 54449 pos 21466-29947 IS confused by 3' edge to read 102630 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 5261 erate 0.0145 score 5184.72 - absdiff 2037.16 percdiff 32.8400 tig 795 read 54449 pos 21466-29947 NOT confused by 3' edge to read 355790 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 4509 erate 0.0158 score 4437.76 - absdiff 2784.12 percdiff 47.7565 tig 795 read 54449 pos 21466-29947 NOT confused by 3' edge to read 355791 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 4513 erate 0.0160 score 4440.79 - absdiff 2781.08 percdiff 47.6921 tig 795 read 54449 pos 21466-29947 NOT confused by 3' edge to read 501593 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 1865 erate 0.0673 score 1739.49 - absdiff 5482.39 percdiff 122.3562 saved region 21399:30750 - 4 best edges are potentially confused break tig 795 into up to 3 pieces: 0 20899 unique (length 20899) 20899 31250 repeat (length 10351) 31250 37339 unique (length 6089) Creating Unitig 113312 Creating Unitig 113313 Creating Unitig 113314 For tig 795 unique region 0 20899 - 0/ 24 reads repeat/unique - unitig 113312 created. For tig 795 repeat region 20899 31250 - 57/ 0 reads repeat/unique - unitig 113313 created. For tig 795 unique region 31250 37339 - 0/ 13 reads repeat/unique - unitig 113314 created. Annotating repeats in reads for tig 796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 800/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2909:8786 - closest read 196135 ( +640) 2269:8786 ( +0) (contained) saved region 2909:8786 - closest 5' read 196135 ( +640) 2269:8786 ( +0) saved region 2909:8786 - closest 3' read 196135 ( +640) 2269:8786 ( +0) search for confused edges: discard region 2909:8786 - no confusion in best edges Annotating repeats in reads for tig 814/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9974:12678 - contained in read 549639 1441- 12678 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 815/113047. Annotated with 98 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7656:11875 - closest 5' read 47879 ( +7656) 0:11835 ( -40) saved region 7656:11875 - closest 3' read 132325 ( -80) 7736:11948 ( +73) search for confused edges: tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 220680 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 2887 erate 0.0329 score 2792.02 - absdiff 18.17 percdiff 0.6528 tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 364636 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 2358 erate 0.0519 score 2235.62 - absdiff 538.23 percdiff 21.4885 tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 366016 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 1910 erate 0.0540 score 1806.86 - absdiff 966.99 percdiff 42.2201 tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 605565 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 1220 erate 0.0383 score 1173.27 - absdiff 1600.58 percdiff 81.1009 saved region 7656:11875 - 4 best edges are potentially confused break tig 815 into up to 3 pieces: 0 7156 unique (length 7156) 7156 12375 repeat (length 5219) 12375 40142 unique (length 27767) Creating Unitig 113315 Creating Unitig 113316 Creating Unitig 113317 For tig 815 unique region 0 7156 - 0/ 18 reads repeat/unique - unitig 113315 created. For tig 815 repeat region 7156 12375 - 30/ 0 reads repeat/unique - unitig 113316 created. For tig 815 unique region 12375 40142 - 0/ 44 reads repeat/unique - unitig 113317 created. Annotating repeats in reads for tig 821/113047. Annotated with 402 overlaps. Scan reads to discard spanned repeats. discard region 5878:7638 - contained in read 76454 692- 8488 thickest edges to the repeat regions: saved region 10761:14703 - closest 5' read 711313 ( +1586) 9175:14690 ( -13) saved region 10761:14703 - closest 3' read 699476 ( -2047) 12808:18805 ( +4102) search for confused edges: discard region 10761:14703 - no confusion in best edges Annotating repeats in reads for tig 826/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 827/113047. Annotated with 3733 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12618:37660 - closest 5' read 662055 ( +0) 12618:31502 ( -6158) saved region 12618:37660 - closest 3' read 655055 ( -5908) 18526:37660 ( +0) search for confused edges: tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 608890 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1681 erate 0.0211 score 1645.53 - absdiff 349.12 percdiff 19.1817 tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 608891 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1778 erate 0.0164 score 1748.84 - absdiff 245.81 percdiff 13.1329 tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 608892 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1721 erate 0.0258 score 1676.60 - absdiff 318.06 percdiff 17.3269 tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 694003 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1162 erate 0.0112 score 1148.99 - absdiff 845.67 percdiff 53.8019 tig 827 read 662055 pos 12618-31502 NOT confused by 3' edge to read 450260 - best edge read 608891 len 4768 erate 0.0069 score 4735.10 - alt edge len 1136 erate 0.0492 score 1080.11 - absdiff 3654.99 percdiff 125.7046 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 61325 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 1769 erate 0.0164 score 1739.99 - absdiff 3007.03 percdiff 92.7093 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 61326 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 1762 erate 0.0227 score 1722.00 - absdiff 3025.02 percdiff 93.5231 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 327057 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 712 erate 0.0677 score 663.80 - absdiff 4083.22 percdiff 150.9281 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 327065 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 799 erate 0.0518 score 757.61 - absdiff 3989.41 percdiff 144.9473 tig 827 read 608891 pos 27076-33695 IS confused by 5' edge to read 400613 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 4326 erate 0.0197 score 4240.78 - absdiff 506.24 percdiff 11.2651 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 566316 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 1668 erate 0.0372 score 1605.95 - absdiff 3141.07 percdiff 98.8850 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 61325 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 1708 erate 0.0258 score 1663.93 - absdiff 4700.82 percdiff 117.1006 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 61326 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 1701 erate 0.0329 score 1645.04 - absdiff 4719.72 percdiff 117.8487 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 327065 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 746 erate 0.0571 score 703.40 - absdiff 5661.35 percdiff 160.1931 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 400613 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 4255 erate 0.0259 score 4144.80 - absdiff 2219.96 percdiff 42.2465 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 566316 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 1608 erate 0.0435 score 1538.05 - absdiff 4826.70 percdiff 122.1516 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 61325 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 1659 erate 0.0211 score 1624.00 - absdiff 4791.74 percdiff 119.2015 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 61326 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 1652 erate 0.0297 score 1602.94 - absdiff 4812.80 percdiff 120.0398 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 327057 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 613 erate 0.0698 score 570.21 - absdiff 5845.52 percdiff 167.3509 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 327065 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 699 erate 0.0485 score 665.10 - absdiff 5750.64 percdiff 162.4282 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 400613 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 4206 erate 0.0252 score 4100.01 - absdiff 2315.73 percdiff 44.0430 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 566316 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 1560 erate 0.0417 score 1494.95 - absdiff 4920.79 percdiff 124.4086 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 61325 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 1161 erate 0.0112 score 1148.00 - absdiff 4809.44 percdiff 135.3736 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 61326 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 1154 erate 0.0173 score 1134.04 - absdiff 4823.40 percdiff 136.0338 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 400613 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 3711 erate 0.0188 score 3641.23 - absdiff 2316.20 percdiff 48.2609 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 566316 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 1060 erate 0.0321 score 1025.97 - absdiff 4931.46 percdiff 141.2336 saved region 12618:37660 - 5 best edges are potentially confused break tig 827 into up to 2 pieces: 0 12118 unique (length 12118) 12118 37660 repeat (length 25542) Creating Unitig 113318 Creating Unitig 113319 For tig 827 unique region 0 12118 - 0/ 23 reads repeat/unique - unitig 113318 created. For tig 827 repeat region 12118 37660 - 156/ 0 reads repeat/unique - unitig 113319 created. Annotating repeats in reads for tig 828/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 4617:5180 - contained in read 42695 1531- 6398 thickest edges to the repeat regions: saved region 1459:2540 - closest read 118234 ( +1459) 0:2540 ( +0) (contained) saved region 1459:2540 - closest 5' read 118234 ( +1459) 0:2540 ( +0) saved region 1459:2540 - closest 3' read 118234 ( +1459) 0:2540 ( +0) search for confused edges: tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71503 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 654 erate 0.0505 score 620.97 - absdiff 358.51 percdiff 44.8005 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71504 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 627 erate 0.0543 score 592.95 - absdiff 386.52 percdiff 49.1626 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71506 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 644 erate 0.0498 score 611.93 - absdiff 367.55 percdiff 46.1918 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71509 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 650 erate 0.0524 score 615.94 - absdiff 363.54 percdiff 45.5728 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 651438 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 1042 erate 0.0637 score 975.62 - absdiff 3.85 percdiff 0.3942 saved region 1459:2540 - 5 best edges are potentially confused break tig 828 into up to 3 pieces: 0 959 unique (length 959) 959 3040 repeat (length 2081) 3040 28275 unique (length 25235) Creating Unitig 113320 Creating Unitig 113321 For tig 828 unique region 0 959 - 0/ 1 reads repeat/unique - unitig 113320 created. For tig 828 repeat region 959 3040 - 0/ 0 repeat/unique reads - no new unitig created. For tig 828 unique region 3040 28275 - 0/ 41 reads repeat/unique - unitig 113321 created. Annotating repeats in reads for tig 829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 834/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 539:6106 - contained in read 24809 24- 6106 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 840/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 14042:15877 - contained in read 481261 11286- 17023 thickest edges to the repeat regions: saved region 15832:16872 - closest read 481261 ( +4546) 11286:17023 ( +151) (contained) saved region 15832:16872 - closest read 183415 ( +3489) 12343:17018 ( +146) (contained) saved region 15832:16872 - closest read 502367 ( +2070) 13762:16994 ( +122) (contained) saved region 15832:16872 - closest read 405453 ( +1296) 14536:16872 ( +0) (contained) saved region 15832:16872 - closest read 566273 ( +454) 15378:24808 ( +7936) (contained) saved region 15832:16872 - closest read 566272 ( +312) 15520:24835 ( +7963) (contained) saved region 15832:16872 - closest 5' read 566272 ( +312) 15520:24835 ( +7963) saved region 15832:16872 - closest 3' read 481261 ( +4546) 11286:17023 ( +151) search for confused edges: discard region 15832:16872 - no confusion in best edges Annotating repeats in reads for tig 841/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 10607:11334 - contained in read 191540 5716- 12565 discard region 11289:12676 - contained in read 675913 10609- 14150 discard region 13333:15339 - contained in read 48370 10618- 17836 discard region 26394:31658 - contained in read 571085 21830- 31658 thickest edges to the repeat regions: saved region 1995:7708 - closest 5' read 517946 ( +1994) 1:6181 ( -1527) saved region 1995:7708 - closest 3' read 504617 ( -1807) 3802:9721 ( +2013) search for confused edges: discard region 1995:7708 - no confusion in best edges Annotating repeats in reads for tig 842/113047. Annotated with 1092 overlaps. Scan reads to discard spanned repeats. discard region 36731:39836 - contained in read 432479 34443- 39836 thickest edges to the repeat regions: saved region 1922:26751 - closest 5' read 48619 ( +1709) 213:6844 (-19907) saved region 1922:26751 - closest 3' read 462656 (-15747) 17669:34401 ( +7650) search for confused edges: tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 75695 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 1208 erate 0.0498 score 1147.84 - absdiff 3297.44 percdiff 117.9105 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 75696 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 962 erate 0.0428 score 920.83 - absdiff 3524.46 percdiff 131.3599 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 130592 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3201 erate 0.0483 score 3046.39 - absdiff 1398.89 percdiff 37.3452 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 308216 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2565 erate 0.0520 score 2431.62 - absdiff 2013.66 percdiff 58.5631 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 408694 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2822 erate 0.0490 score 2683.72 - absdiff 1761.56 percdiff 49.4196 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 480132 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2417 erate 0.0634 score 2263.76 - absdiff 2181.52 percdiff 65.0322 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 487993 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 522 erate 0.0732 score 483.79 - absdiff 3961.49 percdiff 160.7399 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 487994 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 1449 erate 0.0587 score 1363.94 - absdiff 3081.34 percdiff 106.0843 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 496271 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 635 erate 0.0379 score 610.93 - absdiff 3834.35 percdiff 151.6687 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 515186 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3180 erate 0.0462 score 3033.08 - absdiff 1412.20 percdiff 37.7676 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 633370 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3217 erate 0.0562 score 3036.20 - absdiff 1409.08 percdiff 37.6684 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 642904 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2830 erate 0.0543 score 2676.33 - absdiff 1768.95 percdiff 49.6784 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 701901 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3272 erate 0.0509 score 3105.46 - absdiff 1339.83 percdiff 35.4887 tig 842 read 201691 pos 2104-13238 NOT confused by 5' edge to read 480132 - best edge read 611584 len 8765 erate 0.0265 score 8532.73 - alt edge len 729 erate 0.0529 score 690.44 - absdiff 7842.29 percdiff 170.0564 tig 842 read 201691 pos 2104-13238 NOT confused by 5' edge to read 513091 - best edge read 611584 len 8765 erate 0.0265 score 8532.73 - alt edge len 592 erate 0.0647 score 553.70 - absdiff 7979.03 percdiff 175.6253 tig 842 read 201691 pos 2104-13238 NOT confused by 5' edge to read 642904 - best edge read 611584 len 8765 erate 0.0265 score 8532.73 - alt edge len 3654 erate 0.0473 score 3481.17 - absdiff 5051.56 percdiff 84.0953 tig 842 read 414731 pos 2184-9211 NOT confused by 5' edge to read 75695 - best edge read 414732 len 6919 erate 0.0178 score 6795.84 - alt edge len 3188 erate 0.0433 score 3049.96 - absdiff 3745.88 percdiff 76.0910 tig 842 read 414731 pos 2184-9211 NOT confused by 5' edge to read 75696 - best edge read 414732 len 6919 erate 0.0178 score 6795.84 - alt edge len 3190 erate 0.0391 score 3065.27 - absdiff 3730.57 percdiff 75.6623 tig 842 read 414731 pos 2184-9211 NOT confused by 5' edge to read 308216 - best edge read 414732 len 6919 erate 0.0178 score 6795.84 - alt edge len 4543 erate 0.0422 score 4351.29 - absdiff 2444.56 percdiff 43.8598 tig 842 read 414732 pos 2186-9193 NOT confused by 3' edge to read 75695 - best edge read 201691 len 6899 erate 0.0410 score 6616.14 - alt edge len 3190 erate 0.0382 score 3068.14 - absdiff 3548.00 percdiff 73.2733 tig 842 read 414732 pos 2186-9193 NOT confused by 3' edge to read 75696 - best edge read 201691 len 6899 erate 0.0410 score 6616.14 - alt edge len 3192 erate 0.0337 score 3084.43 - absdiff 3531.71 percdiff 72.8145 tig 842 read 414732 pos 2186-9193 NOT confused by 3' edge to read 308216 - best edge read 201691 len 6899 erate 0.0410 score 6616.14 - alt edge len 4544 erate 0.0378 score 4372.24 - absdiff 2243.90 percdiff 40.8414 tig 842 read 611584 pos 4304-14239 NOT confused by 5' edge to read 462656 - best edge read 201691 len 8722 erate 0.0265 score 8490.87 - alt edge len 2965 erate 0.0311 score 2872.79 - absdiff 5618.08 percdiff 98.8780 tig 842 read 611584 pos 4304-14239 NOT confused by 3' edge to read 480132 - best edge read 585139 len 9673 erate 0.0246 score 9435.04 - alt edge len 1752 erate 0.0303 score 1698.91 - absdiff 7736.13 percdiff 138.9646 tig 842 read 611584 pos 4304-14239 NOT confused by 3' edge to read 513091 - best edge read 585139 len 9673 erate 0.0246 score 9435.04 - alt edge len 1622 erate 0.0358 score 1563.93 - absdiff 7871.11 percdiff 143.1244 tig 842 read 611584 pos 4304-14239 NOT confused by 5' edge to read 560477 - best edge read 201691 len 8722 erate 0.0265 score 8490.87 - alt edge len 2912 erate 0.0543 score 2753.88 - absdiff 5736.99 percdiff 102.0386 tig 842 read 611584 pos 4304-14239 NOT confused by 3' edge to read 642904 - best edge read 585139 len 9673 erate 0.0246 score 9435.04 - alt edge len 4648 erate 0.0284 score 4516.00 - absdiff 4919.05 percdiff 70.5187 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 432007 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 1476 erate 0.0736 score 1367.37 - absdiff 8057.04 percdiff 149.3182 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 432009 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 1470 erate 0.0645 score 1375.18 - absdiff 8049.23 percdiff 149.0653 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 432010 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 1477 erate 0.0672 score 1377.75 - absdiff 8046.67 percdiff 148.9826 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 462656 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 3012 erate 0.0296 score 2922.84 - absdiff 6501.57 percdiff 105.3119 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 560477 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 2959 erate 0.0554 score 2795.07 - absdiff 6629.34 percdiff 108.5044 tig 842 read 585139 pos 4368-16267 NOT confused by 5' edge to read 565245 - best edge read 408694 len 8178 erate 0.0164 score 8043.88 - alt edge len 1658 erate 0.0261 score 1614.73 - absdiff 6429.15 percdiff 133.1280 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 656360 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 867 erate 0.0636 score 811.86 - absdiff 8612.55 percdiff 168.2752 tig 842 read 408694 pos 7986-20270 NOT confused by 5' edge to read 48618 - best edge read 130592 len 11941 erate 0.0610 score 11212.60 - alt edge len 2839 erate 0.0490 score 2699.89 - absdiff 8512.71 percdiff 122.3751 tig 842 read 408694 pos 7986-20270 NOT confused by 5' edge to read 58734 - best edge read 130592 len 11941 erate 0.0610 score 11212.60 - alt edge len 4332 erate 0.0503 score 4114.10 - absdiff 7098.50 percdiff 92.6292 tig 842 read 408694 pos 7986-20270 NOT confused by 5' edge to read 560477 - best edge read 130592 len 11941 erate 0.0610 score 11212.60 - alt edge len 2704 erate 0.0571 score 2549.60 - absdiff 8663.00 percdiff 125.8955 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 48618 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 3166 erate 0.0483 score 3013.08 - absdiff 6564.46 percdiff 104.2754 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 58734 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 4605 erate 0.0328 score 4453.96 - absdiff 5123.59 percdiff 73.0298 tig 842 read 130592 pos 8326-20448 NOT confused by 5' edge to read 143031 - best edge read 408694 len 11621 erate 0.0634 score 10884.23 - alt edge len 3807 erate 0.0284 score 3698.88 - absdiff 7185.35 percdiff 98.5434 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 432007 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 1687 erate 0.0682 score 1571.95 - absdiff 8005.60 percdiff 143.6047 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 432009 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 1072 erate 0.0597 score 1008.00 - absdiff 8569.54 percdiff 161.9103 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 432010 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 1078 erate 0.0612 score 1012.03 - absdiff 8565.52 percdiff 161.7727 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 560477 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 2791 erate 0.0535 score 2641.68 - absdiff 6935.86 percdiff 113.5237 tig 842 read 130592 pos 8326-20448 IS confused by 5' edge to read 630197 - best edge read 408694 len 11621 erate 0.0634 score 10884.23 - alt edge len 9758 erate 0.0234 score 9529.66 - absdiff 1354.57 percdiff 13.2710 tig 842 read 701901 pos 10362-21096 NOT confused by 5' edge to read 48618 - best edge read 515186 len 10531 erate 0.0231 score 10287.73 - alt edge len 3277 erate 0.0509 score 3110.20 - absdiff 7177.53 percdiff 107.1439 tig 842 read 701901 pos 10362-21096 NOT confused by 3' edge to read 308216 - best edge read 130592 len 9962 erate 0.0330 score 9633.25 - alt edge len 2609 erate 0.0433 score 2496.03 - absdiff 7137.22 percdiff 117.6858 tig 842 read 701901 pos 10362-21096 NOT confused by 5' edge to read 560477 - best edge read 515186 len 10531 erate 0.0231 score 10287.73 - alt edge len 3762 erate 0.0503 score 3572.77 - absdiff 6714.96 percdiff 96.8935 tig 842 read 701901 pos 10362-21096 IS confused by 3' edge to read 630197 - best edge read 130592 len 9962 erate 0.0330 score 9633.25 - alt edge len 7821 erate 0.0348 score 7548.83 - absdiff 2084.42 percdiff 24.2628 tig 842 read 515186 pos 10441-21563 IS confused by 5' edge to read 48618 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 3167 erate 0.0462 score 3020.68 - absdiff 940.24 percdiff 26.9347 tig 842 read 515186 pos 10441-21563 NOT confused by 3' edge to read 143031 - best edge read 701901 len 10512 erate 0.0231 score 10269.17 - alt edge len 1886 erate 0.0703 score 1753.41 - absdiff 8515.76 percdiff 141.6627 tig 842 read 515186 pos 10441-21563 NOT confused by 3' edge to read 308216 - best edge read 701901 len 10512 erate 0.0231 score 10269.17 - alt edge len 2625 erate 0.0422 score 2514.22 - absdiff 7754.95 percdiff 121.3284 tig 842 read 515186 pos 10441-21563 NOT confused by 5' edge to read 432009 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 1431 erate 0.0610 score 1343.71 - absdiff 2617.22 percdiff 98.6766 tig 842 read 515186 pos 10441-21563 NOT confused by 5' edge to read 432010 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 946 erate 0.0627 score 886.69 - absdiff 3074.24 percdiff 126.8352 tig 842 read 515186 pos 10441-21563 IS confused by 5' edge to read 560477 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 3771 erate 0.0439 score 3605.45 - absdiff 355.47 percdiff 9.3961 tig 842 read 515186 pos 10441-21563 NOT confused by 3' edge to read 630197 - best edge read 701901 len 10512 erate 0.0231 score 10269.17 - alt edge len 7810 erate 0.0339 score 7545.24 - absdiff 2723.93 percdiff 30.5812 saved region 1922:26751 - 11 best edges are potentially confused break tig 842 into up to 3 pieces: 0 1422 unique (length 1422) 1422 27251 repeat (length 25829) 27251 39836 unique (length 12585) Creating Unitig 113322 Creating Unitig 113323 Creating Unitig 113324 For tig 842 unique region 0 1422 - 0/ 5 reads repeat/unique - unitig 113322 created. For tig 842 repeat region 1422 27251 - 316/ 0 reads repeat/unique - unitig 113323 created. For tig 842 unique region 27251 39836 - 0/ 11 reads repeat/unique - unitig 113324 created. Annotating repeats in reads for tig 843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 844/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7096:7755 - contained in read 201991 2512- 8688 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 845/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 18427:17184 - contained in read 341467 12652- 18427 discard region 18497:17192 - contained in read 341467 12652- 18427 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 846/113047. Annotated with 535 overlaps. Scan reads to discard spanned repeats. discard region 8453:12158 - contained in read 720885 2257- 12158 thickest edges to the repeat regions: saved region 2257:8414 - closest read 720885 ( +0) 2257:12158 ( +3744) (contained) saved region 2257:8414 - closest 5' read 720885 ( +0) 2257:12158 ( +3744) saved region 2257:8414 - closest 3' read 720885 ( +0) 2257:12158 ( +3744) search for confused edges: tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 54168 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 2622 erate 0.0678 score 2444.23 - absdiff 560.83 percdiff 20.5835 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 54169 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 2628 erate 0.0630 score 2462.44 - absdiff 542.62 percdiff 19.8489 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 235956 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 1125 erate 0.0625 score 1054.69 - absdiff 1950.37 percdiff 96.0833 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 348930 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 2480 erate 0.0543 score 2345.34 - absdiff 659.72 percdiff 24.6606 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 687136 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 1959 erate 0.0682 score 1825.40 - absdiff 1179.66 percdiff 48.8426 saved region 2257:8414 - 5 best edges are potentially confused break tig 846 into up to 3 pieces: 0 1757 unique (length 1757) 1757 8914 repeat (length 7157) 8914 12158 unique (length 3244) Creating Unitig 113325 Creating Unitig 113326 Creating Unitig 113327 For tig 846 unique region 0 1757 - 0/ 7 reads repeat/unique - unitig 113325 created. For tig 846 repeat region 1757 8914 - 63/ 0 reads repeat/unique - unitig 113327 created. For tig 846 unique region 8914 12158 - 0/ 10 reads repeat/unique - unitig 113326 created. Annotating repeats in reads for tig 848/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 5461:10770 - contained in read 443664 506- 13235 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 849/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 22124:22708 - contained in read 25013 18849- 24874 thickest edges to the repeat regions: saved region 10145:15341 - closest 5' read 235 ( +3185) 6960:14809 ( -532) saved region 10145:15341 - closest 3' read 401029 ( -3096) 13241:15341 ( +0) saved region 18846:19520 - closest read 481635 ( +5368) 13478:19520 ( +0) (contained) saved region 18846:19520 - closest 5' read 481635 ( +5368) 13478:19520 ( +0) saved region 18846:19520 - closest 3' read 481635 ( +5368) 13478:19520 ( +0) search for confused edges: tig 849 read 481641 pos 13505-19517 IS confused by 5' edge to read 97486 - best edge read 600853 len 657 erate 0.0639 score 615.02 - alt edge len 621 erate 0.0547 score 587.03 - absdiff 27.99 percdiff 4.6564 discard region 10145:15341 - no confusion in best edges saved region 18846:19520 - 1 best edges are potentially confused break tig 849 into up to 3 pieces: 0 18346 unique (length 18346) 18346 20020 repeat (length 1674) 20020 25925 unique (length 5905) Creating Unitig 113328 Creating Unitig 113329 For tig 849 unique region 0 18346 - 0/ 35 reads repeat/unique - unitig 113328 created. For tig 849 repeat region 18346 20020 - 0/ 0 repeat/unique reads - no new unitig created. For tig 849 unique region 20020 25925 - 0/ 9 reads repeat/unique - unitig 113329 created. Annotating repeats in reads for tig 850/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 13192:12485 - contained in read 239681 7248- 15905 thickest edges to the repeat regions: saved region 18229:24153 - closest 5' read 291597 ( +6011) 12218:18770 ( -5383) saved region 18229:24153 - closest 3' read 611260 ( -286) 18515:27113 ( +2960) search for confused edges: tig 850 read 444081 pos 18237-23868 IS confused by 5' edge to read 106944 - best edge read 718785 len 5575 erate 0.0079 score 5530.96 - alt edge len 4017 erate 0.0282 score 3903.72 - absdiff 1627.24 percdiff 34.4948 tig 850 read 444081 pos 18237-23868 IS confused by 5' edge to read 106945 - best edge read 718785 len 5575 erate 0.0079 score 5530.96 - alt edge len 4016 erate 0.0403 score 3854.16 - absdiff 1676.80 percdiff 35.7332 tig 850 read 444081 pos 18237-23868 NOT confused by 5' edge to read 493931 - best edge read 718785 len 5575 erate 0.0079 score 5530.96 - alt edge len 2780 erate 0.0347 score 2683.53 - absdiff 2847.42 percdiff 69.3268 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 20418 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 4049 erate 0.0354 score 3905.67 - absdiff 1641.17 percdiff 34.7245 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 61417 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 586 erate 0.0513 score 555.94 - absdiff 4990.89 percdiff 163.5616 tig 850 read 718785 pos 18258-24104 IS confused by 5' edge to read 106944 - best edge read 611260 len 5575 erate 0.0099 score 5519.81 - alt edge len 4260 erate 0.0331 score 4118.99 - absdiff 1400.81 percdiff 29.0661 tig 850 read 718785 pos 18258-24104 IS confused by 5' edge to read 106945 - best edge read 611260 len 5575 erate 0.0099 score 5519.81 - alt edge len 4259 erate 0.0440 score 4071.60 - absdiff 1448.20 percdiff 30.1979 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 142335 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 5403 erate 0.0228 score 5279.81 - absdiff 267.02 percdiff 4.9326 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 374368 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 1077 erate 0.0262 score 1048.78 - absdiff 4498.05 percdiff 136.3951 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 397829 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 4666 erate 0.0201 score 4572.21 - absdiff 974.62 percdiff 19.2630 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 397830 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 4670 erate 0.0170 score 4590.61 - absdiff 956.22 percdiff 18.8651 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 428455 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 5402 erate 0.0187 score 5300.98 - absdiff 245.85 percdiff 4.5327 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 443706 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 2010 erate 0.0678 score 1873.72 - absdiff 3673.11 percdiff 98.9983 tig 850 read 718785 pos 18258-24104 NOT confused by 5' edge to read 493931 - best edge read 611260 len 5575 erate 0.0099 score 5519.81 - alt edge len 3011 erate 0.0354 score 2904.41 - absdiff 2615.40 percdiff 62.0923 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 523870 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 2624 erate 0.0309 score 2542.92 - absdiff 3003.91 percdiff 74.2647 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 685265 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 667 erate 0.0151 score 656.93 - absdiff 4889.90 percdiff 157.6432 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 20418 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 3779 erate 0.0342 score 3649.76 - absdiff 1849.26 percdiff 40.4263 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 142335 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 5137 erate 0.0211 score 5028.61 - absdiff 470.41 percdiff 8.9366 tig 850 read 611260 pos 18515-27113 NOT confused by 5' edge to read 374368 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 834 erate 0.0242 score 813.82 - absdiff 4685.20 percdiff 148.4341 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 397829 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 4397 erate 0.0196 score 4310.82 - absdiff 1188.20 percdiff 24.2246 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 397830 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 4402 erate 0.0164 score 4329.81 - absdiff 1169.21 percdiff 23.7914 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 428455 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 5136 erate 0.0166 score 5050.74 - absdiff 448.27 percdiff 8.4983 tig 850 read 611260 pos 18515-27113 NOT confused by 5' edge to read 443706 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 1756 erate 0.0667 score 1638.87 - absdiff 3860.14 percdiff 108.1591 tig 850 read 611260 pos 18515-27113 NOT confused by 5' edge to read 523870 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 2373 erate 0.0251 score 2313.44 - absdiff 3185.58 percdiff 81.5513 saved region 18229:24153 - 14 best edges are potentially confused break tig 850 into up to 3 pieces: 0 17729 unique (length 17729) 17729 24653 repeat (length 6924) 24653 27468 unique (length 2815) Creating Unitig 113330 Creating Unitig 113331 Creating Unitig 113332 For tig 850 unique region 0 17729 - 0/ 21 reads repeat/unique - unitig 113330 created. For tig 850 repeat region 17729 24653 - 16/ 0 reads repeat/unique - unitig 113331 created. For tig 850 unique region 24653 27468 - 0/ 6 reads repeat/unique - unitig 113332 created. Annotating repeats in reads for tig 851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 852/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 19081:19666 - contained in read 613151 18371- 21653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 855/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 4341:5456 - contained in read 374415 0- 7235 discard region 22889:25004 - contained in read 610871 13910- 28057 discard region 25599:27440 - contained in read 610871 13910- 28057 thickest edges to the repeat regions: saved region 9023:12530 - closest 5' read 553592 ( +3818) 5205:11718 ( -812) saved region 9023:12530 - closest 3' read 30443 ( -22) 9045:12530 ( +0) saved region 30315:33442 - closest read 690237 ( +94) 30221:33471 ( +29) (contained) saved region 30315:33442 - closest read 710533 ( +0) 30315:37625 ( +4183) (contained) saved region 30315:33442 - closest 5' read 710533 ( +0) 30315:37625 ( +4183) saved region 30315:33442 - closest 3' read 690237 ( +94) 30221:33471 ( +29) search for confused edges: tig 855 read 110609 pos 9170-18631 IS confused by 5' edge to read 205852 - best edge read 553592 len 2535 erate 0.0519 score 2403.43 - alt edge len 1069 erate 0.0433 score 1022.71 - absdiff 1380.72 percdiff 80.5991 tig 855 read 110609 pos 9170-18631 IS confused by 5' edge to read 205853 - best edge read 553592 len 2535 erate 0.0519 score 2403.43 - alt edge len 1101 erate 0.0320 score 1065.77 - absdiff 1337.67 percdiff 77.1166 tig 855 read 110609 pos 9170-18631 IS confused by 5' edge to read 211420 - best edge read 553592 len 2535 erate 0.0519 score 2403.43 - alt edge len 2159 erate 0.0396 score 2073.50 - absdiff 329.93 percdiff 14.7391 saved region 9023:12530 - 3 best edges are potentially confused discard region 30315:33442 - no confusion in best edges break tig 855 into up to 3 pieces: 0 8523 unique (length 8523) 8523 13030 repeat (length 4507) 13030 41835 unique (length 28805) Creating Unitig 113333 Creating Unitig 113334 Creating Unitig 113335 For tig 855 unique region 0 8523 - 0/ 13 reads repeat/unique - unitig 113333 created. For tig 855 repeat region 8523 13030 - 3/ 0 reads repeat/unique - unitig 113334 created. For tig 855 unique region 13030 41835 - 0/ 90 reads repeat/unique - unitig 113335 created. Annotating repeats in reads for tig 856/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 32435:31269 - contained in read 583280 29575- 41888 thickest edges to the repeat regions: saved region 29575:30487 - closest read 583280 ( +0) 29575:41888 (+11401) (contained) saved region 29575:30487 - closest 5' read 583280 ( +0) 29575:41888 (+11401) saved region 29575:30487 - closest 3' read 583280 ( +0) 29575:41888 (+11401) search for confused edges: discard region 29575:30487 - no confusion in best edges Annotating repeats in reads for tig 858/113047. Annotated with 1794 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8976 - closest 5' read 176884 ( +0) 0:6256 ( -2720) saved region 0:8976 - closest 3' read 102946 ( -2976) 2976:10018 ( +1042) search for confused edges: tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 191090 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2282 erate 0.0563 score 2153.52 - absdiff 3134.68 percdiff 84.2461 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 226532 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2457 erate 0.0525 score 2328.01 - absdiff 2960.20 percdiff 77.7342 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 226533 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 3581 erate 0.0497 score 3403.02 - absdiff 1885.18 percdiff 43.3813 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 285999 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 5198 erate 0.0321 score 5031.14 - absdiff 257.06 percdiff 4.9822 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 348202 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2996 erate 0.0240 score 2924.10 - absdiff 2364.11 percdiff 57.5749 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 460113 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 919 erate 0.0653 score 858.99 - absdiff 4429.22 percdiff 144.1053 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 493596 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 5245 erate 0.0311 score 5081.88 - absdiff 206.33 percdiff 3.9793 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 526515 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 759 erate 0.0540 score 718.01 - absdiff 4570.19 percdiff 152.1820 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 550681 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 3578 erate 0.0375 score 3443.83 - absdiff 1844.38 percdiff 42.2441 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 583971 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 4446 erate 0.0292 score 4316.18 - absdiff 972.03 percdiff 20.2414 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 653095 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 4922 erate 0.0374 score 4737.92 - absdiff 550.29 percdiff 10.9771 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 702749 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2725 erate 0.0672 score 2541.88 - absdiff 2746.33 percdiff 70.1481 saved region 0:8976 - 6 best edges are potentially confused break tig 858 into up to 2 pieces: 0 9476 repeat (length 9476) 9476 10920 unique (length 1444) Creating Unitig 113336 Creating Unitig 113337 For tig 858 repeat region 0 9476 - 73/ 0 reads repeat/unique - unitig 113336 created. For tig 858 unique region 9476 10920 - 0/ 3 reads repeat/unique - unitig 113337 created. Annotating repeats in reads for tig 860/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 457:1136 - contained in read 636960 0- 8778 discard region 6143:14489 - contained in read 169683 5372- 14489 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 865/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 13460:14076 - contained in read 302928 5834- 15639 thickest edges to the repeat regions: saved region 14509:22581 - closest read 74557 ( +951) 13558:22800 ( +219) (contained) saved region 14509:22581 - closest 5' read 74557 ( +951) 13558:22800 ( +219) saved region 14509:22581 - closest 3' read 74557 ( +951) 13558:22800 ( +219) search for confused edges: discard region 14509:22581 - no confusion in best edges Annotating repeats in reads for tig 868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 870/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15743:16786 - contained in read 613388 13184- 17317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 871/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3051:16078 - closest read 678302 ( +0) 3051:16690 ( +612) (contained) saved region 3051:16078 - closest 5' read 678302 ( +0) 3051:16690 ( +612) saved region 3051:16078 - closest 3' read 678302 ( +0) 3051:16690 ( +612) search for confused edges: tig 871 read 678301 pos 0-13615 NOT confused by 5' edge to read 181405 - best edge read 97682 len 5590 erate 0.0052 score 5560.93 - alt edge len 2454 erate 0.0147 score 2417.93 - absdiff 3143.01 percdiff 78.7833 tig 871 read 678301 pos 0-13615 NOT confused by 5' edge to read 181406 - best edge read 97682 len 5590 erate 0.0052 score 5560.93 - alt edge len 2254 erate 0.0040 score 2244.98 - absdiff 3315.95 percdiff 84.9599 tig 871 read 97682 pos 7462-14267 NOT confused by 3' edge to read 181405 - best edge read 154036 len 6250 erate 0.0043 score 6223.12 - alt edge len 3611 erate 0.0103 score 3573.81 - absdiff 2649.32 percdiff 54.0847 tig 871 read 97682 pos 7462-14267 NOT confused by 3' edge to read 181406 - best edge read 154036 len 6250 erate 0.0043 score 6223.12 - alt edge len 3411 erate 0.0041 score 3397.01 - absdiff 2826.11 percdiff 58.7540 tig 871 read 154036 pos 7953-15009 NOT confused by 3' edge to read 181405 - best edge read 154034 len 7001 erate 0.0064 score 6956.19 - alt edge len 4363 erate 0.0150 score 4297.56 - absdiff 2658.64 percdiff 47.2489 tig 871 read 154036 pos 7953-15009 NOT confused by 3' edge to read 181406 - best edge read 154034 len 7001 erate 0.0064 score 6956.19 - alt edge len 4163 erate 0.0065 score 4135.94 - absdiff 2820.25 percdiff 50.8514 tig 871 read 154034 pos 7957-15017 IS confused by 3' edge to read 181405 - best edge read 188463 len 4455 erate 0.0511 score 4227.35 - alt edge len 4372 erate 0.0142 score 4309.92 - absdiff 82.57 percdiff 1.9343 tig 871 read 154034 pos 7957-15017 IS confused by 3' edge to read 181406 - best edge read 188463 len 4455 erate 0.0511 score 4227.35 - alt edge len 4172 erate 0.0060 score 4146.97 - absdiff 80.38 percdiff 1.9197 saved region 3051:16078 - 2 best edges are potentially confused break tig 871 into up to 3 pieces: 0 2551 unique (length 2551) 2551 16578 repeat (length 14027) 16578 22947 unique (length 6369) Creating Unitig 113338 Creating Unitig 113339 Creating Unitig 113340 For tig 871 unique region 0 2551 - 0/ 1 reads repeat/unique - unitig 113338 created. For tig 871 repeat region 2551 16578 - 32/ 0 reads repeat/unique - unitig 113340 created. For tig 871 unique region 16578 22947 - 0/ 10 reads repeat/unique - unitig 113339 created. Annotating repeats in reads for tig 872/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6688:7222 - closest read 307432 ( +6635) 53:7222 ( +0) (contained) saved region 6688:7222 - closest read 17986 ( +495) 6193:15213 ( +7991) (contained) saved region 6688:7222 - closest read 17983 ( +490) 6198:15278 ( +8056) (contained) saved region 6688:7222 - closest read 17984 ( +476) 6212:15317 ( +8095) (contained) saved region 6688:7222 - closest read 17985 ( +396) 6292:15330 ( +8108) (contained) saved region 6688:7222 - closest 5' read 17985 ( +396) 6292:15330 ( +8108) saved region 6688:7222 - closest 3' read 307432 ( +6635) 53:7222 ( +0) saved region 19894:24205 - closest 5' read 8559 ( +5450) 14444:23925 ( -280) saved region 19894:24205 - closest 3' read 464837 ( -6) 19900:27432 ( +3227) search for confused edges: tig 872 read 8560 pos 14440-23921 IS confused by 5' edge to read 277604 - best edge read 464837 len 3968 erate 0.0561 score 3745.40 - alt edge len 3964 erate 0.0508 score 3762.63 - absdiff 17.23 percdiff 0.4591 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 63632 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3106 erate 0.0490 score 2953.81 - absdiff 858.61 percdiff 25.3792 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 213440 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 685 erate 0.0571 score 645.89 - absdiff 3166.53 percdiff 142.0509 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 262258 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 758 erate 0.0640 score 709.49 - absdiff 3102.92 percdiff 137.2398 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 278436 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3203 erate 0.0432 score 3064.63 - absdiff 747.78 percdiff 21.7472 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 570206 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 1426 erate 0.0295 score 1383.93 - absdiff 2428.48 percdiff 93.4687 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 570207 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 1427 erate 0.0239 score 1392.89 - absdiff 2419.52 percdiff 92.9635 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 607259 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 1184 erate 0.0386 score 1138.30 - absdiff 2674.11 percdiff 108.0295 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 653358 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3893 erate 0.0511 score 3694.07 - absdiff 118.34 percdiff 3.1531 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 653359 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3912 erate 0.0576 score 3686.67 - absdiff 125.74 percdiff 3.3536 discard region 6688:7222 - no confusion in best edges saved region 19894:24205 - 5 best edges are potentially confused break tig 872 into up to 3 pieces: 0 19394 unique (length 19394) 19394 24705 repeat (length 5311) 24705 29831 unique (length 5126) Creating Unitig 113341 Creating Unitig 113342 Creating Unitig 113343 For tig 872 unique region 0 19394 - 0/ 22 reads repeat/unique - unitig 113341 created. For tig 872 repeat region 19394 24705 - 3/ 0 reads repeat/unique - unitig 113343 created. For tig 872 unique region 24705 29831 - 0/ 8 reads repeat/unique - unitig 113342 created. Annotating repeats in reads for tig 874/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 7929:9071 - contained in read 125580 316- 9959 thickest edges to the repeat regions: saved region 13534:17694 - closest 5' read 327169 ( +1325) 12209:17180 ( -514) saved region 13534:17694 - closest 3' read 373778 ( -1016) 14550:20059 ( +2365) search for confused edges: tig 874 read 576522 pos 9055-16357 IS confused by 3' edge to read 314084 - best edge read 373778 len 1807 erate 0.0222 score 1766.88 - alt edge len 1635 erate 0.0284 score 1588.57 - absdiff 178.32 percdiff 10.6286 tig 874 read 576522 pos 9055-16357 IS confused by 3' edge to read 314087 - best edge read 373778 len 1807 erate 0.0222 score 1766.88 - alt edge len 1597 erate 0.0397 score 1533.60 - absdiff 233.29 percdiff 14.1364 saved region 13534:17694 - 2 best edges are potentially confused break tig 874 into up to 3 pieces: 0 13034 unique (length 13034) 13034 18194 repeat (length 5160) 18194 20080 unique (length 1886) Creating Unitig 113344 Creating Unitig 113345 Creating Unitig 113346 For tig 874 unique region 0 13034 - 0/ 24 reads repeat/unique - unitig 113344 created. For tig 874 repeat region 13034 18194 - 4/ 0 reads repeat/unique - unitig 113345 created. For tig 874 unique region 18194 20080 - 0/ 2 reads repeat/unique - unitig 113346 created. Annotating repeats in reads for tig 876/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 18820:21505 - contained in read 342623 17992- 23345 discard region 21692:22580 - contained in read 342623 17992- 23345 thickest edges to the repeat regions: saved region 12140:15553 - closest 5' read 501924 ( +5431) 6709:15552 ( -1) saved region 12140:15553 - closest 3' read 141001 ( -183) 12323:16529 ( +976) search for confused edges: tig 876 read 141001 pos 12323-16529 IS confused by 5' edge to read 35442 - best edge read 501924 len 3137 erate 0.0561 score 2961.01 - alt edge len 2450 erate 0.0480 score 2332.40 - absdiff 628.61 percdiff 23.7508 saved region 12140:15553 - 1 best edges are potentially confused break tig 876 into up to 3 pieces: 0 11640 unique (length 11640) 11640 16053 repeat (length 4413) 16053 23644 unique (length 7591) Creating Unitig 113347 Creating Unitig 113348 Creating Unitig 113349 For tig 876 unique region 0 11640 - 0/ 11 reads repeat/unique - unitig 113347 created. For tig 876 repeat region 11640 16053 - 25/ 0 reads repeat/unique - unitig 113348 created. For tig 876 unique region 16053 23644 - 0/ 14 reads repeat/unique - unitig 113349 created. Annotating repeats in reads for tig 877/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 12854:15792 - contained in read 489044 10669- 18296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 880/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 17427:17988 - contained in read 51820 13164- 20969 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 883/113047. Annotated with 162 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1648:18713 - closest 5' read 286976 ( +1648) 0:13492 ( -5221) saved region 1648:18713 - closest 3' read 475548 ( -6866) 8514:20333 ( +1620) search for confused edges: tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 364034 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 677 erate 0.0328 score 654.79 - absdiff 4078.03 percdiff 151.3853 tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 539728 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 883 erate 0.0475 score 841.06 - absdiff 3891.77 percdiff 139.6430 tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 539729 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 953 erate 0.0449 score 910.21 - absdiff 3822.62 percdiff 135.4808 tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 539730 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 899 erate 0.0346 score 867.89 - absdiff 3864.93 percdiff 138.0155 discard region 1648:18713 - no confusion in best edges Annotating repeats in reads for tig 884/113047. Annotated with 354 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16472:21954 - closest 5' read 102712 ( +0) 16472:21929 ( -25) saved region 16472:21954 - closest 3' read 537937 ( -805) 17277:21954 ( +0) search for confused edges: tig 884 read 627422 pos 12309-19807 IS confused by 3' edge to read 344098 - best edge read 379269 len 2468 erate 0.0556 score 2330.78 - alt edge len 2468 erate 0.0637 score 2310.79 - absdiff 19.99 percdiff 0.8614 tig 884 read 627422 pos 12309-19807 IS confused by 3' edge to read 676373 - best edge read 379269 len 2468 erate 0.0556 score 2330.78 - alt edge len 1431 erate 0.0657 score 1336.98 - absdiff 993.80 percdiff 54.1909 tig 884 read 627422 pos 12309-19807 IS confused by 3' edge to read 676376 - best edge read 379269 len 2468 erate 0.0556 score 2330.78 - alt edge len 1418 erate 0.0656 score 1324.98 - absdiff 1005.80 percdiff 55.0255 saved region 16472:21954 - 3 best edges are potentially confused break tig 884 into up to 3 pieces: 0 15972 unique (length 15972) 15972 22454 repeat (length 6482) 22454 26399 unique (length 3945) Creating Unitig 113350 Creating Unitig 113351 Creating Unitig 113352 For tig 884 unique region 0 15972 - 0/ 29 reads repeat/unique - unitig 113350 created. For tig 884 repeat region 15972 22454 - 26/ 0 reads repeat/unique - unitig 113351 created. For tig 884 unique region 22454 26399 - 0/ 10 reads repeat/unique - unitig 113352 created. Annotating repeats in reads for tig 888/113047. Annotated with 173 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2280:9057 - closest 5' read 460958 ( +2280) 0:8944 ( -113) saved region 2280:9057 - closest 3' read 488833 ( -1433) 3713:9057 ( +0) saved region 12499:19224 - closest 5' read 426563 ( +0) 12499:16994 ( -2230) saved region 12499:19224 - closest 3' read 100507 ( -107) 12606:20012 ( +788) saved region 19524:21138 - closest read 661258 ( +418) 19106:28120 ( +6982) (contained) saved region 19524:21138 - closest read 661257 ( +311) 19213:30070 ( +8932) (contained) saved region 19524:21138 - closest read 538263 ( +11) 19513:21204 ( +66) (contained) saved region 19524:21138 - closest read 372854 ( +0) 19524:26806 ( +5668) (contained) saved region 19524:21138 - closest 5' read 661257 ( +311) 19213:30070 ( +8932) saved region 19524:21138 - closest 3' read 661258 ( +418) 19106:28120 ( +6982) saved region 25639:29995 - closest read 661257 ( +6426) 19213:30070 ( +75) (contained) saved region 25639:29995 - closest 5' read 661257 ( +6426) 19213:30070 ( +75) saved region 25639:29995 - closest 3' read 661257 ( +6426) 19213:30070 ( +75) search for confused edges: tig 888 read 292626 pos 4087-13944 NOT confused by 5' edge to read 276176 - best edge read 460958 len 4856 erate 0.0226 score 4746.25 - alt edge len 2147 erate 0.0103 score 2124.89 - absdiff 2621.37 percdiff 76.3008 tig 888 read 292627 pos 9051-14122 IS confused by 5' edge to read 619821 - best edge read 97208 len 1591 erate 0.0704 score 1478.99 - alt edge len 1585 erate 0.0394 score 1522.55 - absdiff 43.56 percdiff 2.9023 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 9014 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 578 erate 0.0519 score 548.00 - absdiff 939.36 percdiff 92.3038 tig 888 read 97208 pos 12518-18563 NOT confused by 5' edge to read 29246 - best edge read 326307 len 5757 erate 0.0303 score 5582.56 - alt edge len 680 erate 0.0312 score 658.78 - absdiff 4923.78 percdiff 157.7794 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 66401 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 837 erate 0.0253 score 815.82 - absdiff 671.54 percdiff 58.3137 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 66402 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 597 erate 0.0603 score 561.00 - absdiff 926.36 percdiff 90.4488 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 309402 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1314 erate 0.0431 score 1257.37 - absdiff 229.99 percdiff 16.7589 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 309406 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1311 erate 0.0465 score 1250.04 - absdiff 237.32 percdiff 17.3392 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 411741 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1139 erate 0.0579 score 1073.05 - absdiff 414.31 percdiff 32.3626 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 517093 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1173 erate 0.0451 score 1120.10 - absdiff 367.26 percdiff 28.1701 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 628694 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 978 erate 0.0423 score 936.63 - absdiff 550.73 percdiff 45.4399 tig 888 read 326307 pos 12747-19728 NOT confused by 5' edge to read 66401 - best edge read 97208 len 5790 erate 0.0303 score 5614.56 - alt edge len 598 erate 0.0321 score 578.80 - absdiff 5035.76 percdiff 162.6178 tig 888 read 326307 pos 12747-19728 NOT confused by 5' edge to read 309402 - best edge read 97208 len 5790 erate 0.0303 score 5614.56 - alt edge len 1078 erate 0.0584 score 1015.04 - absdiff 4599.52 percdiff 138.7569 tig 888 read 326307 pos 12747-19728 NOT confused by 5' edge to read 309406 - best edge read 97208 len 5790 erate 0.0303 score 5614.56 - alt edge len 1075 erate 0.0645 score 1005.66 - absdiff 4608.90 percdiff 139.2370 discard region 2280:9057 - no confusion in best edges saved region 12499:19224 - 9 best edges are potentially confused discard region 19524:21138 - no confusion in best edges discard region 25639:29995 - no confusion in best edges break tig 888 into up to 3 pieces: 0 11999 unique (length 11999) 11999 19724 repeat (length 7725) 19724 36687 unique (length 16963) Creating Unitig 113353 Creating Unitig 113354 Creating Unitig 113355 For tig 888 unique region 0 11999 - 0/ 26 reads repeat/unique - unitig 113353 created. For tig 888 repeat region 11999 19724 - 15/ 0 reads repeat/unique - unitig 113354 created. For tig 888 unique region 19724 36687 - 0/ 33 reads repeat/unique - unitig 113355 created. Annotating repeats in reads for tig 890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 891/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 895/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 28203:30075 - contained in read 564717 21981- 30606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 897/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5643:13484 - closest read 675102 ( +395) 5248:16755 ( +3271) (contained) saved region 5643:13484 - closest 5' read 675102 ( +395) 5248:16755 ( +3271) saved region 5643:13484 - closest 3' read 675102 ( +395) 5248:16755 ( +3271) search for confused edges: discard region 5643:13484 - no confusion in best edges Annotating repeats in reads for tig 901/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 21278:22507 - contained in read 132454 12586- 23223 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 903/113047. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 1662:0 - contained in read 210128 0- 4815 thickest edges to the repeat regions: saved region 1797:11898 - closest 5' read 307587 ( +1167) 630:7369 ( -4529) saved region 1797:11898 - closest 3' read 538463 ( -2294) 4091:12152 ( +254) search for confused edges: discard region 1797:11898 - no confusion in best edges Annotating repeats in reads for tig 906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 907/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2433:1694 - contained in read 216085 0- 8597 discard region 3610:6275 - contained in read 216085 0- 8597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 909/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 20650:18654 - contained in read 108700 15051- 20965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 911/113047. Annotated with 790 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:21705 - closest 5' read 2168 ( +0) 0:8066 (-13639) saved region 0:21705 - closest 3' read 692170 (-13346) 13346:21705 ( +0) search for confused edges: tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 77608 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 1985 erate 0.0338 score 1917.91 - absdiff 867.96 percdiff 36.9047 tig 911 read 451900 pos 3157-9948 IS confused by 3' edge to read 228932 - best edge read 2168 len 4442 erate 0.0279 score 4318.07 - alt edge len 3984 erate 0.0168 score 3917.07 - absdiff 401.00 percdiff 9.7387 tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 247359 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 1343 erate 0.0240 score 1310.77 - absdiff 1475.09 percdiff 72.0150 tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 347885 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 1897 erate 0.0300 score 1840.09 - absdiff 945.77 percdiff 40.8899 tig 911 read 451900 pos 3157-9948 NOT confused by 3' edge to read 364107 - best edge read 2168 len 4442 erate 0.0279 score 4318.07 - alt edge len 2036 erate 0.0222 score 1990.80 - absdiff 2327.27 percdiff 73.7776 tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 493642 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 708 erate 0.0141 score 698.02 - absdiff 2087.85 percdiff 119.8575 saved region 0:21705 - 5 best edges are potentially confused Annotating repeats in reads for tig 914/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 14934:17198 - contained in read 57512 11232- 17198 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 919/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1724:872 - contained in read 342229 0- 5821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 921/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 924/113047. Annotated with 256 overlaps. Scan reads to discard spanned repeats. discard region 25225:27522 - contained in read 544929 22305- 27522 thickest edges to the repeat regions: saved region 22183:23910 - closest 5' read 688385 ( +8182) 14001:23680 ( -230) saved region 22183:23910 - closest 3' read 544929 ( -122) 22305:27522 ( +3612) search for confused edges: tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 14907 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 590 erate 0.0475 score 561.98 - absdiff 666.06 percdiff 74.4195 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 90741 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 883 erate 0.0589 score 830.99 - absdiff 397.04 percdiff 38.5659 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 272001 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 1288 erate 0.0691 score 1199.00 - absdiff 29.03 percdiff 2.3924 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 441438 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 1301 erate 0.0576 score 1226.06 - absdiff 1.97 percdiff 0.1605 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 532508 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 603 erate 0.0663 score 563.02 - absdiff 665.01 percdiff 74.2592 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 550995 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 1050 erate 0.0743 score 971.99 - absdiff 256.05 percdiff 23.2768 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 707181 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 597 erate 0.0720 score 554.02 - absdiff 674.02 percdiff 75.6451 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 707183 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 596 erate 0.0604 score 560.00 - absdiff 668.03 percdiff 74.7223 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 707185 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 594 erate 0.0640 score 555.98 - absdiff 672.05 percdiff 75.3410 saved region 22183:23910 - 9 best edges are potentially confused break tig 924 into up to 3 pieces: 0 21683 unique (length 21683) 21683 24410 repeat (length 2727) 24410 27522 unique (length 3112) Creating Unitig 113356 Creating Unitig 113357 For tig 924 unique region 0 21683 - 0/ 32 reads repeat/unique - unitig 113356 created. For tig 924 repeat region 21683 24410 - 0/ 0 repeat/unique reads - no new unitig created. For tig 924 unique region 24410 27522 - 0/ 1 reads repeat/unique - unitig 113357 created. Annotating repeats in reads for tig 925/113047. Annotated with 418 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2886:24072 - closest 5' read 583945 ( +1916) 970:7266 (-16806) saved region 2886:24072 - closest 3' read 196129 (-15100) 17986:24072 ( +0) saved region 30091:38851 - closest 5' read 648908 ( +5928) 24163:38035 ( -816) saved region 30091:38851 - closest 3' read 38255 ( -1146) 31237:40386 ( +1535) search for confused edges: tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 85597 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 1587 erate 0.0690 score 1477.50 - absdiff 11857.22 percdiff 160.1006 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 107677 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 2121 erate 0.0573 score 1999.47 - absdiff 11335.25 percdiff 147.8429 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 107678 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 2110 erate 0.0605 score 1982.35 - absdiff 11352.37 percdiff 148.2317 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 170875 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 1134 erate 0.0697 score 1054.96 - absdiff 12279.75 percdiff 170.6745 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 218492 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 5819 erate 0.0569 score 5487.90 - absdiff 7846.82 percdiff 83.3765 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 218495 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 5820 erate 0.0572 score 5487.10 - absdiff 7847.62 percdiff 83.3886 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 446469 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 2602 erate 0.0486 score 2475.54 - absdiff 10859.17 percdiff 137.3687 tig 925 read 625831 pos 3021-11035 NOT confused by 3' edge to read 161542 - best edge read 625829 len 7804 erate 0.0440 score 7460.62 - alt edge len 1044 erate 0.0393 score 1002.97 - absdiff 6457.65 percdiff 152.5984 tig 925 read 625831 pos 3021-11035 IS confused by 5' edge to read 381770 - best edge read 583945 len 4191 erate 0.0721 score 3888.83 - alt edge len 4607 erate 0.0641 score 4311.69 - absdiff 422.86 percdiff 10.3131 tig 925 read 625831 pos 3021-11035 IS confused by 5' edge to read 446469 - best edge read 583945 len 4191 erate 0.0721 score 3888.83 - alt edge len 2836 erate 0.0719 score 2632.09 - absdiff 1256.74 percdiff 38.5448 tig 925 read 625831 pos 3021-11035 NOT confused by 3' edge to read 622279 - best edge read 625829 len 7804 erate 0.0440 score 7460.62 - alt edge len 966 erate 0.0714 score 897.03 - absdiff 6563.60 percdiff 157.0680 tig 925 read 625829 pos 3119-17343 NOT confused by 5' edge to read 381770 - best edge read 625831 len 7799 erate 0.0440 score 7455.84 - alt edge len 4536 erate 0.0494 score 4311.92 - absdiff 3143.92 percdiff 53.4328 tig 925 read 625829 pos 3119-17343 NOT confused by 5' edge to read 381773 - best edge read 625831 len 7799 erate 0.0440 score 7455.84 - alt edge len 4884 erate 0.0534 score 4623.19 - absdiff 2832.65 percdiff 46.9019 tig 925 read 387296 pos 19301-26900 IS confused by 3' edge to read 105942 - best edge read 479738 len 4596 erate 0.0620 score 4311.05 - alt edge len 3312 erate 0.0701 score 3079.83 - absdiff 1231.22 percdiff 33.3173 tig 925 read 387296 pos 19301-26900 IS confused by 3' edge to read 703587 - best edge read 479738 len 4596 erate 0.0620 score 4311.05 - alt edge len 3982 erate 0.0404 score 3821.13 - absdiff 489.92 percdiff 12.0489 tig 925 read 387296 pos 19301-26900 IS confused by 3' edge to read 703588 - best edge read 479738 len 4596 erate 0.0620 score 4311.05 - alt edge len 3980 erate 0.0489 score 3785.38 - absdiff 525.67 percdiff 12.9852 saved region 2886:24072 - 5 best edges are potentially confused discard region 30091:38851 - no confusion in best edges break tig 925 into up to 3 pieces: 0 2386 unique (length 2386) 2386 24572 repeat (length 22186) 24572 43877 unique (length 19305) Creating Unitig 113358 Creating Unitig 113359 Creating Unitig 113360 For tig 925 unique region 0 2386 - 0/ 2 reads repeat/unique - unitig 113358 created. For tig 925 repeat region 2386 24572 - 1024/ 0 reads repeat/unique - unitig 113359 created. For tig 925 unique region 24572 43877 - 0/ 30 reads repeat/unique - unitig 113360 created. Annotating repeats in reads for tig 926/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 14048:15570 - contained in read 496291 3607- 16752 thickest edges to the repeat regions: saved region 17377:23576 - closest 5' read 530395 ( +3451) 13926:20044 ( -3532) saved region 17377:23576 - closest 3' read 654337 ( -6) 17383:24877 ( +1301) search for confused edges: discard region 17377:23576 - no confusion in best edges Annotating repeats in reads for tig 928/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 17344:17924 - contained in read 603458 11775- 19714 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 929/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 933/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3165:3819 - contained in read 344969 0- 5705 discard region 9491:10724 - contained in read 640481 8694- 14856 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 936/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 16229:22775 - contained in read 309211 14970- 22775 thickest edges to the repeat regions: saved region 6122:6961 - closest read 277806 ( +5355) 767:7217 ( +256) (contained) saved region 6122:6961 - closest read 277804 ( +5352) 770:7196 ( +235) (contained) saved region 6122:6961 - closest read 277802 ( +5349) 773:7171 ( +210) (contained) saved region 6122:6961 - closest read 427091 ( +0) 6122:10263 ( +3302) (contained) saved region 6122:6961 - closest 5' read 427091 ( +0) 6122:10263 ( +3302) saved region 6122:6961 - closest 3' read 277806 ( +5355) 767:7217 ( +256) search for confused edges: discard region 6122:6961 - no confusion in best edges Annotating repeats in reads for tig 940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 941/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10546:11550 - contained in read 301204 8014- 16214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 942/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 2697:1714 - contained in read 395503 0- 5899 discard region 4300:4957 - contained in read 395503 0- 5899 discard region 5020:6351 - contained in read 355716 15- 7133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 944/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 949/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 950/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 0:5756 - contained in read 468260 0- 6802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 951/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 13513:14063 - contained in read 530092 6719- 17924 thickest edges to the repeat regions: saved region 4426:10825 - closest 5' read 488196 ( +404) 4022:10540 ( -285) saved region 4426:10825 - closest 3' read 401440 ( -1305) 5731:13340 ( +2515) search for confused edges: tig 951 read 530092 pos 6719-17924 IS confused by 3' edge to read 114255 - best edge read 488196 len 3758 erate 0.0327 score 3635.11 - alt edge len 2141 erate 0.0687 score 1993.91 - absdiff 1641.20 percdiff 58.3120 tig 951 read 530092 pos 6719-17924 NOT confused by 3' edge to read 235402 - best edge read 488196 len 3758 erate 0.0327 score 3635.11 - alt edge len 1032 erate 0.0572 score 972.97 - absdiff 2662.14 percdiff 115.5424 saved region 4426:10825 - 1 best edges are potentially confused break tig 951 into up to 3 pieces: 0 3926 unique (length 3926) 3926 11325 repeat (length 7399) 11325 33099 unique (length 21774) Creating Unitig 113361 Creating Unitig 113362 Creating Unitig 113363 For tig 951 unique region 0 3926 - 0/ 9 reads repeat/unique - unitig 113361 created. For tig 951 repeat region 3926 11325 - 27/ 0 reads repeat/unique - unitig 113362 created. For tig 951 unique region 11325 33099 - 0/ 19 reads repeat/unique - unitig 113363 created. Annotating repeats in reads for tig 953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 959/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1497:6152 - contained in read 538888 0- 6889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 962/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 971/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5901:7494 - closest 5' read 367972 ( +5845) 56:6505 ( -989) saved region 5901:7494 - closest 3' read 602373 ( -36) 5937:10716 ( +3222) search for confused edges: discard region 5901:7494 - no confusion in best edges Annotating repeats in reads for tig 973/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 974/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19420:20017 - closest read 195897 ( +6290) 13130:20020 ( +3) (contained) saved region 19420:20017 - closest read 195896 ( +6289) 13131:20037 ( +20) (contained) saved region 19420:20017 - closest read 195899 ( +6256) 13164:20035 ( +18) (contained) saved region 19420:20017 - closest read 195898 ( +6226) 13194:20037 ( +20) (contained) saved region 19420:20017 - closest read 250058 ( +5540) 13880:20017 ( +0) (contained) saved region 19420:20017 - closest read 250060 ( +5539) 13881:20064 ( +47) (contained) saved region 19420:20017 - closest read 250059 ( +5534) 13886:20067 ( +50) (contained) saved region 19420:20017 - closest read 250057 ( +5533) 13887:20069 ( +52) (contained) saved region 19420:20017 - closest read 250056 ( +5295) 14125:20069 ( +52) (contained) saved region 19420:20017 - closest read 195895 ( +4458) 14962:20031 ( +14) (contained) saved region 19420:20017 - closest 5' read 250057 ( +5533) 13887:20069 ( +52) saved region 19420:20017 - closest 3' read 195897 ( +6290) 13130:20020 ( +3) search for confused edges: discard region 19420:20017 - no confusion in best edges Annotating repeats in reads for tig 975/113047. Annotated with 365 overlaps. Scan reads to discard spanned repeats. discard region 10961:13165 - contained in read 536316 9884- 18632 thickest edges to the repeat regions: saved region 14793:18653 - closest 5' read 536318 ( +4817) 9976:18637 ( -16) saved region 14793:18653 - closest 3' read 597926 ( -1645) 16438:22862 ( +4209) search for confused edges: tig 975 read 597926 pos 16438-22862 IS confused by 3' edge to read 34443 - best edge read 536320 len 2181 erate 0.0618 score 2046.21 - alt edge len 820 erate 0.0441 score 783.84 - absdiff 1262.38 percdiff 89.2122 tig 975 read 597926 pos 16438-22862 IS confused by 3' edge to read 143860 - best edge read 536320 len 2181 erate 0.0618 score 2046.21 - alt edge len 578 erate 0.0473 score 550.66 - absdiff 1495.55 percdiff 115.1810 tig 975 read 597926 pos 16438-22862 IS confused by 3' edge to read 557566 - best edge read 536320 len 2181 erate 0.0618 score 2046.21 - alt edge len 840 erate 0.0578 score 791.45 - absdiff 1254.77 percdiff 88.4366 saved region 14793:18653 - 3 best edges are potentially confused break tig 975 into up to 3 pieces: 0 14293 unique (length 14293) 14293 19153 repeat (length 4860) 19153 28017 unique (length 8864) Creating Unitig 113364 Creating Unitig 113365 Creating Unitig 113366 For tig 975 unique region 0 14293 - 0/ 20 reads repeat/unique - unitig 113364 created. For tig 975 repeat region 14293 19153 - 8/ 0 reads repeat/unique - unitig 113365 created. For tig 975 unique region 19153 28017 - 0/ 21 reads repeat/unique - unitig 113366 created. Annotating repeats in reads for tig 984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 988/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 33157:34248 - contained in read 701939 23803- 35203 thickest edges to the repeat regions: saved region 2879:6004 - closest 5' read 482488 ( +2879) 0:5982 ( -22) saved region 2879:6004 - closest 3' read 450309 ( -32) 2911:6004 ( +0) search for confused edges: tig 988 read 277070 pos 2944-17908 NOT confused by 5' edge to read 375286 - best edge read 482488 len 2936 erate 0.0636 score 2749.27 - alt edge len 523 erate 0.0325 score 506.00 - absdiff 2243.27 percdiff 137.8236 discard region 2879:6004 - no confusion in best edges Annotating repeats in reads for tig 992/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 1261:4817 - contained in read 488631 0- 5797 discard region 5594:8411 - contained in read 78703 2367- 8411 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 999/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1013:0 - contained in read 461470 0- 4703 discard region 22893:24365 - contained in read 54311 17439- 29070 thickest edges to the repeat regions: saved region 12497:13294 - closest read 156391 ( +0) 12497:18334 ( +5040) (contained) saved region 12497:13294 - closest 5' read 156391 ( +0) 12497:18334 ( +5040) saved region 12497:13294 - closest 3' read 156391 ( +0) 12497:18334 ( +5040) search for confused edges: tig 999 read 57950 pos 4195-13218 IS confused by 5' edge to read 339946 - best edge read 156390 len 715 erate 0.0563 score 674.75 - alt edge len 522 erate 0.0665 score 487.29 - absdiff 187.46 percdiff 32.2639 tig 999 read 156390 pos 12500-18355 IS confused by 3' edge to read 602687 - best edge read 57950 len 723 erate 0.0563 score 682.30 - alt edge len 582 erate 0.0450 score 555.81 - absdiff 126.49 percdiff 20.4320 saved region 12497:13294 - 2 best edges are potentially confused break tig 999 into up to 3 pieces: 0 11997 unique (length 11997) 11997 13794 repeat (length 1797) 13794 35949 unique (length 22155) Creating Unitig 113367 Creating Unitig 113368 For tig 999 unique region 0 11997 - 0/ 8 reads repeat/unique - unitig 113367 created. For tig 999 repeat region 11997 13794 - 0/ 0 repeat/unique reads - no new unitig created. For tig 999 unique region 13794 35949 - 0/ 33 reads repeat/unique - unitig 113368 created. Annotating repeats in reads for tig 1000/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 22434:20758 - contained in read 272836 16840- 22682 thickest edges to the repeat regions: saved region 6182:7247 - closest 5' read 35193 ( +114) 6068:7225 ( -22) saved region 6182:7247 - closest 3' read 4256 ( -52) 6234:15239 ( +7992) search for confused edges: discard region 6182:7247 - no confusion in best edges Annotating repeats in reads for tig 1001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1003/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 10323:14365 - contained in read 547103 8395- 14365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1006/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2402:3655 - contained in read 607531 907- 6266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1008/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9934:10492 - contained in read 180962 3196- 11397 thickest edges to the repeat regions: saved region 15308:16352 - closest 5' read 274054 ( +5576) 9732:15887 ( -465) saved region 15308:16352 - closest 3' read 11531 ( -51) 15359:22543 ( +6191) search for confused edges: tig 1008 read 11533 pos 15367-22615 IS confused by 5' edge to read 441076 - best edge read 274058 len 536 erate 0.0636 score 501.91 - alt edge len 976 erate 0.0586 score 918.81 - absdiff 416.90 percdiff 58.6881 saved region 15308:16352 - 1 best edges are potentially confused break tig 1008 into up to 3 pieces: 0 14808 unique (length 14808) 14808 16852 repeat (length 2044) 16852 27269 unique (length 10417) Creating Unitig 113369 Creating Unitig 113370 For tig 1008 unique region 0 14808 - 0/ 26 reads repeat/unique - unitig 113369 created. For tig 1008 repeat region 14808 16852 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1008 unique region 16852 27269 - 0/ 12 reads repeat/unique - unitig 113370 created. Annotating repeats in reads for tig 1009/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 5114:5875 - contained in read 415720 0- 9524 discard region 16337:17330 - contained in read 392823 12379- 17477 thickest edges to the repeat regions: saved region 6914:15736 - closest 5' read 631186 ( +1786) 5128:14518 ( -1218) saved region 6914:15736 - closest 3' read 529067 ( -1402) 8316:15736 ( +0) search for confused edges: tig 1009 read 631186 pos 5128-14518 NOT confused by 5' edge to read 518860 - best edge read 585632 len 7164 erate 0.0142 score 7062.27 - alt edge len 1518 erate 0.0283 score 1475.04 - absdiff 5587.23 percdiff 130.8897 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 14630 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 842 erate 0.0590 score 792.32 - absdiff 6281.78 percdiff 159.7112 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 27008 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 4882 erate 0.0127 score 4820.00 - absdiff 2254.10 percdiff 37.9029 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 27010 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 4879 erate 0.0162 score 4799.96 - absdiff 2274.14 percdiff 38.3043 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 27011 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 4202 erate 0.0162 score 4133.93 - absdiff 2940.17 percdiff 52.4655 tig 1009 read 585632 pos 7421-15282 NOT confused by 5' edge to read 518860 - best edge read 585631 len 7798 erate 0.0077 score 7737.96 - alt edge len 2145 erate 0.0425 score 2053.84 - absdiff 5684.12 percdiff 116.0996 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 14630 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 837 erate 0.0554 score 790.63 - absdiff 6943.36 percdiff 162.9013 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 27008 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 4879 erate 0.0105 score 4827.77 - absdiff 2906.22 percdiff 46.2708 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 27010 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 4876 erate 0.0137 score 4809.20 - absdiff 2924.79 percdiff 46.6355 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 27011 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 4201 erate 0.0131 score 4145.97 - absdiff 3588.02 percdiff 60.4046 tig 1009 read 585631 pos 7424-15290 NOT confused by 3' edge to read 518860 - best edge read 188384 len 6176 erate 0.0532 score 5847.44 - alt edge len 2154 erate 0.0372 score 2073.87 - absdiff 3773.57 percdiff 95.2763 tig 1009 read 188384 pos 9147-16157 NOT confused by 3' edge to read 27008 - best edge read 585631 len 6036 erate 0.0552 score 5702.81 - alt edge len 3253 erate 0.0120 score 3213.96 - absdiff 2488.85 percdiff 55.8240 tig 1009 read 188384 pos 9147-16157 NOT confused by 3' edge to read 27010 - best edge read 585631 len 6036 erate 0.0552 score 5702.81 - alt edge len 3250 erate 0.0089 score 3221.07 - absdiff 2481.74 percdiff 55.6201 tig 1009 read 188384 pos 9147-16157 NOT confused by 3' edge to read 27011 - best edge read 585631 len 6036 erate 0.0552 score 5702.81 - alt edge len 2560 erate 0.0188 score 2511.87 - absdiff 3190.94 percdiff 77.6887 tig 1009 read 650435 pos 10247-17064 NOT confused by 3' edge to read 27008 - best edge read 188384 len 4594 erate 0.0179 score 4511.77 - alt edge len 932 erate 0.0225 score 911.03 - absdiff 3600.74 percdiff 132.8000 tig 1009 read 650435 pos 10247-17064 NOT confused by 3' edge to read 27010 - best edge read 188384 len 4594 erate 0.0179 score 4511.77 - alt edge len 929 erate 0.0194 score 910.98 - absdiff 3600.79 percdiff 132.8032 discard region 6914:15736 - no confusion in best edges Annotating repeats in reads for tig 1014/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:576 - contained in read 539728 0- 7216 discard region 6281:7287 - contained in read 539729 108- 7287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1018/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:1651 - contained in read 151071 0- 6253 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1019/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1027/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 42021:39601 - contained in read 121850 34352- 42021 thickest edges to the repeat regions: saved region 6626:7454 - closest read 342684 ( +5732) 894:7454 ( +0) (contained) saved region 6626:7454 - closest read 639148 ( +4) 6622:10985 ( +3531) (contained) saved region 6626:7454 - closest 5' read 639148 ( +4) 6622:10985 ( +3531) saved region 6626:7454 - closest 3' read 342684 ( +5732) 894:7454 ( +0) search for confused edges: discard region 6626:7454 - no confusion in best edges Annotating repeats in reads for tig 1032/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 17199:18078 - contained in read 142300 13496- 18816 thickest edges to the repeat regions: saved region 1574:4340 - closest 5' read 253647 ( +575) 999:4190 ( -150) saved region 1574:4340 - closest 3' read 145089 ( -180) 1754:8372 ( +4032) search for confused edges: tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 45498 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 820 erate 0.0676 score 764.57 - absdiff 1446.70 percdiff 97.2297 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 150241 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 792 erate 0.0660 score 739.73 - absdiff 1471.54 percdiff 99.7316 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 434330 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 511 erate 0.0573 score 481.72 - absdiff 1729.54 percdiff 128.4482 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 482939 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 1323 erate 0.0615 score 1241.64 - absdiff 969.63 percdiff 56.1631 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 676900 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 1798 erate 0.0536 score 1701.63 - absdiff 509.64 percdiff 26.0491 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 713303 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 513 erate 0.0531 score 485.76 - absdiff 1725.50 percdiff 127.9562 saved region 1574:4340 - 6 best edges are potentially confused break tig 1032 into up to 3 pieces: 0 1074 unique (length 1074) 1074 4840 repeat (length 3766) 4840 30335 unique (length 25495) Creating Unitig 113371 Creating Unitig 113372 Creating Unitig 113373 For tig 1032 unique region 0 1074 - 0/ 4 reads repeat/unique - unitig 113371 created. For tig 1032 repeat region 1074 4840 - 1/ 0 reads repeat/unique - unitig 113373 created. For tig 1032 unique region 4840 30335 - 0/ 35 reads repeat/unique - unitig 113372 created. Annotating repeats in reads for tig 1033/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:3838 - contained in read 110878 0- 4509 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1045/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3517:5073 - closest 5' read 123946 ( +187) 3330:5035 ( -38) saved region 3517:5073 - closest 3' read 193156 ( -129) 3646:12757 ( +7684) saved region 10922:12738 - closest read 193156 ( +7276) 3646:12757 ( +19) (contained) saved region 10922:12738 - closest read 193155 ( +7272) 3650:12789 ( +51) (contained) saved region 10922:12738 - closest 5' read 193155 ( +7272) 3650:12789 ( +51) saved region 10922:12738 - closest 3' read 193156 ( +7276) 3646:12757 ( +19) search for confused edges: tig 1045 read 193156 pos 3646-12757 IS confused by 3' edge to read 672236 - best edge read 123946 len 1385 erate 0.0562 score 1307.16 - alt edge len 1266 erate 0.0545 score 1197.00 - absdiff 110.16 percdiff 8.7981 saved region 3517:5073 - 1 best edges are potentially confused discard region 10922:12738 - no confusion in best edges break tig 1045 into up to 3 pieces: 0 3017 unique (length 3017) 3017 5573 repeat (length 2556) 5573 38314 unique (length 32741) Creating Unitig 113374 Creating Unitig 113375 Creating Unitig 113376 For tig 1045 unique region 0 3017 - 0/ 2 reads repeat/unique - unitig 113374 created. For tig 1045 repeat region 3017 5573 - 5/ 0 reads repeat/unique - unitig 113375 created. For tig 1045 unique region 5573 38314 - 0/ 41 reads repeat/unique - unitig 113376 created. Annotating repeats in reads for tig 1047/113047. Annotated with 1962 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10846:12705 - closest 5' read 12814 ( +3671) 7175:12413 ( -292) saved region 10846:12705 - closest 3' read 311096 ( -276) 11122:16058 ( +3353) saved region 14051:31232 - closest 5' read 131139 ( +0) 14051:19390 (-11842) saved region 14051:31232 - closest 3' read 508197 (-11358) 25409:31232 ( +0) search for confused edges: tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 43882 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 1078 erate 0.0475 score 1026.80 - absdiff 402.73 percdiff 32.7912 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 109100 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 671 erate 0.0641 score 627.99 - absdiff 801.53 percdiff 77.9129 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 109102 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 654 erate 0.0619 score 613.52 - absdiff 816.01 percdiff 79.8815 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 275728 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 971 erate 0.0598 score 912.93 - absdiff 516.59 percdiff 44.1065 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 339480 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 713 erate 0.0609 score 669.58 - absdiff 759.94 percdiff 72.4066 tig 1047 read 311096 pos 11122-16058 IS confused by 5' edge to read 32098 - best edge read 131139 len 1439 erate 0.0731 score 1333.81 - alt edge len 573 erate 0.0579 score 539.82 - absdiff 793.99 percdiff 84.7536 tig 1047 read 311096 pos 11122-16058 IS confused by 5' edge to read 709859 - best edge read 131139 len 1439 erate 0.0731 score 1333.81 - alt edge len 1182 erate 0.0647 score 1105.52 - absdiff 228.28 percdiff 18.7170 tig 1047 read 311096 pos 11122-16058 IS confused by 5' edge to read 709861 - best edge read 131139 len 1439 erate 0.0731 score 1333.81 - alt edge len 1180 erate 0.0596 score 1109.67 - absdiff 224.14 percdiff 18.3457 tig 1047 read 648139 pos 15459-21162 IS confused by 5' edge to read 20505 - best edge read 648141 len 5437 erate 0.0424 score 5206.47 - alt edge len 3445 erate 0.0570 score 3248.63 - absdiff 1957.84 percdiff 46.3113 tig 1047 read 648139 pos 15459-21162 IS confused by 3' edge to read 280057 - best edge read 534561 len 1836 erate 0.0671 score 1712.80 - alt edge len 1288 erate 0.0637 score 1205.95 - absdiff 506.85 percdiff 34.7305 tig 1047 read 648141 pos 15525-21060 IS confused by 5' edge to read 20505 - best edge read 131139 len 3738 erate 0.0559 score 3529.05 - alt edge len 3436 erate 0.0574 score 3238.77 - absdiff 290.27 percdiff 8.5780 saved region 10846:12705 - 5 best edges are potentially confused saved region 14051:31232 - 6 best edges are potentially confused break tig 1047 into up to 4 pieces: 0 10346 unique (length 10346) 10346 13205 repeat (length 2859) 13205 13551 unique (length 346) 13551 31232 repeat (length 17681) Creating Unitig 113377 Creating Unitig 113378 Creating Unitig 113379 Creating Unitig 113380 For tig 1047 unique region 0 10346 - 0/ 13 reads repeat/unique - unitig 113377 created. For tig 1047 repeat region 10346 13205 - 1/ 0 reads repeat/unique - unitig 113378 created. For tig 1047 unique region 13205 13551 - 0/ 4 reads repeat/unique - unitig 113379 created. For tig 1047 repeat region 13551 31232 - 70/ 0 reads repeat/unique - unitig 113380 created. Annotating repeats in reads for tig 1052/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6486:9748 - contained in read 278050 4758- 10769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1057/113047. Annotated with 147 overlaps. Scan reads to discard spanned repeats. discard region 6935:7777 - contained in read 673354 2498- 12787 discard region 13206:16277 - contained in read 669683 11178- 18749 discard region 18828:21261 - contained in read 524970 14217- 27611 discard region 29478:34141 - contained in read 600347 27370- 40522 thickest edges to the repeat regions: saved region 38362:40607 - closest read 268533 ( +0) 38362:46062 ( +5455) (contained) saved region 38362:40607 - closest 5' read 268533 ( +0) 38362:46062 ( +5455) saved region 38362:40607 - closest 3' read 268533 ( +0) 38362:46062 ( +5455) saved region 44696:48420 - closest read 575114 ( +3795) 40901:48420 ( +0) (contained) saved region 44696:48420 - closest read 144995 ( +0) 44696:50196 ( +1776) (contained) saved region 44696:48420 - closest 5' read 144995 ( +0) 44696:50196 ( +1776) saved region 44696:48420 - closest 3' read 575114 ( +3795) 40901:48420 ( +0) search for confused edges: tig 1057 read 144991 pos 45344-50884 IS confused by 3' edge to read 302167 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 2161 erate 0.0580 score 2035.66 - absdiff 657.80 percdiff 27.8193 tig 1057 read 144991 pos 45344-50884 NOT confused by 3' edge to read 372708 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 609 erate 0.0646 score 569.66 - absdiff 2123.81 percdiff 130.1702 tig 1057 read 144991 pos 45344-50884 IS confused by 3' edge to read 464241 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 2455 erate 0.0518 score 2327.83 - absdiff 365.64 percdiff 14.5634 tig 1057 read 144991 pos 45344-50884 IS confused by 3' edge to read 464242 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 2456 erate 0.0514 score 2329.76 - absdiff 363.71 percdiff 14.4809 discard region 38362:40607 - no confusion in best edges saved region 44696:48420 - 3 best edges are potentially confused break tig 1057 into up to 3 pieces: 0 44196 unique (length 44196) 44196 48920 repeat (length 4724) 48920 50884 unique (length 1964) Creating Unitig 113381 Creating Unitig 113382 Creating Unitig 113383 For tig 1057 unique region 0 44196 - 0/ 60 reads repeat/unique - unitig 113381 created. For tig 1057 repeat region 44196 48920 - 4/ 0 reads repeat/unique - unitig 113383 created. For tig 1057 unique region 48920 50884 - 0/ 2 reads repeat/unique - unitig 113382 created. Annotating repeats in reads for tig 1060/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 32017:33926 - contained in read 286451 25137- 37738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1061/113047. Annotated with 357 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3087:18545 - closest 5' read 289428 ( +1137) 1950:16260 ( -2285) saved region 3087:18545 - closest 3' read 615182 ( -7449) 10536:18545 ( +0) search for confused edges: tig 1061 read 681628 pos 0-7885 NOT confused by 3' edge to read 447100 - best edge read 289428 len 3950 erate 0.0530 score 3740.65 - alt edge len 1238 erate 0.0347 score 1195.04 - absdiff 2545.61 percdiff 103.1510 tig 1061 read 447100 pos 11916-17984 NOT confused by 5' edge to read 681628 - best edge read 289428 len 4270 erate 0.0492 score 4059.92 - alt edge len 1250 erate 0.0347 score 1206.62 - absdiff 2853.29 percdiff 108.3554 discard region 3087:18545 - no confusion in best edges Annotating repeats in reads for tig 1078/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 0:5852 - contained in read 720943 0- 7827 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1080/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 8252:10292 - contained in read 188750 4589- 10839 thickest edges to the repeat regions: saved region 1706:7543 - closest read 494986 ( +906) 800:7543 ( +0) (contained) saved region 1706:7543 - closest 5' read 494986 ( +906) 800:7543 ( +0) saved region 1706:7543 - closest 3' read 494986 ( +906) 800:7543 ( +0) search for confused edges: discard region 1706:7543 - no confusion in best edges Annotating repeats in reads for tig 1083/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11296:10112 - contained in read 69190 8308- 12561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1084/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 19974:21040 - contained in read 10505 17536- 21307 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1085/113047. Annotated with 81 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 30500:32027 - closest 5' read 30902 ( +5731) 24769:31616 ( -411) saved region 30500:32027 - closest 3' read 550995 ( -72) 30572:37043 ( +5016) search for confused edges: tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 348790 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 880 erate 0.0627 score 824.82 - absdiff 159.15 percdiff 17.5971 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 522986 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 955 erate 0.0566 score 900.95 - absdiff 83.03 percdiff 8.8094 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 522987 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 960 erate 0.0563 score 905.95 - absdiff 78.02 percdiff 8.2564 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 532508 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 590 erate 0.0724 score 547.28 - absdiff 436.69 percdiff 57.0366 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 597224 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 500 erate 0.0680 score 466.00 - absdiff 517.97 percdiff 71.4458 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 707185 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 581 erate 0.0593 score 546.55 - absdiff 437.43 percdiff 57.1604 saved region 30500:32027 - 6 best edges are potentially confused break tig 1085 into up to 3 pieces: 0 30000 unique (length 30000) 30000 32527 repeat (length 2527) 32527 37747 unique (length 5220) Creating Unitig 113384 Creating Unitig 113385 For tig 1085 unique region 0 30000 - 0/ 37 reads repeat/unique - unitig 113384 created. For tig 1085 repeat region 30000 32527 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1085 unique region 32527 37747 - 0/ 5 reads repeat/unique - unitig 113385 created. Annotating repeats in reads for tig 1088/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3281:4513 - contained in read 144032 0- 7925 discard region 17377:19615 - contained in read 577096 11014- 23559 thickest edges to the repeat regions: saved region 23403:25696 - closest read 123814 ( +19) 23384:25708 ( +12) (contained) saved region 23403:25696 - closest 5' read 123814 ( +19) 23384:25708 ( +12) saved region 23403:25696 - closest 3' read 123814 ( +19) 23384:25708 ( +12) search for confused edges: tig 1088 read 263555 pos 19315-25418 IS confused by 3' edge to read 404670 - best edge read 123814 len 1989 erate 0.0425 score 1904.47 - alt edge len 1977 erate 0.0678 score 1842.96 - absdiff 61.51 percdiff 3.2827 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 68357 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2145 erate 0.0557 score 2025.52 - absdiff 93.20 percdiff 4.4979 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 250740 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2133 erate 0.0565 score 2012.49 - absdiff 106.24 percdiff 5.1433 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 282997 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 701 erate 0.0687 score 652.84 - absdiff 1465.88 percdiff 105.7802 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 508276 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 694 erate 0.0679 score 646.88 - absdiff 1471.85 percdiff 106.4396 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 516913 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2025 erate 0.0570 score 1909.57 - absdiff 209.15 percdiff 10.3841 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 647645 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2134 erate 0.0715 score 1981.42 - absdiff 137.31 percdiff 6.6977 saved region 23403:25696 - 7 best edges are potentially confused break tig 1088 into up to 3 pieces: 0 22903 unique (length 22903) 22903 26196 repeat (length 3293) 26196 26918 unique (length 722) Creating Unitig 113386 Creating Unitig 113387 Creating Unitig 113388 For tig 1088 unique region 0 22903 - 0/ 35 reads repeat/unique - unitig 113386 created. For tig 1088 repeat region 22903 26196 - 2/ 0 reads repeat/unique - unitig 113387 created. For tig 1088 unique region 26196 26918 - 0/ 2 reads repeat/unique - unitig 113388 created. Annotating repeats in reads for tig 1092/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1095/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 14481:16344 - contained in read 37311 9820- 16344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1097/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 21581:20695 - contained in read 661848 15638- 21920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1099/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3627:4773 - closest 5' read 397118 ( +1538) 2089:4530 ( -243) saved region 3627:4773 - closest 3' read 309186 ( -167) 3794:10086 ( +5313) search for confused edges: tig 1099 read 397118 pos 2089-4530 IS confused by 3' edge to read 689479 - best edge read 309186 len 722 erate 0.0679 score 672.98 - alt edge len 669 erate 0.0583 score 630.00 - absdiff 42.98 percdiff 6.5970 saved region 3627:4773 - 1 best edges are potentially confused break tig 1099 into up to 3 pieces: 0 3127 unique (length 3127) 3127 5273 repeat (length 2146) 5273 17764 unique (length 12491) Creating Unitig 113389 Creating Unitig 113390 For tig 1099 unique region 0 3127 - 0/ 5 reads repeat/unique - unitig 113389 created. For tig 1099 repeat region 3127 5273 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1099 unique region 5273 17764 - 0/ 18 reads repeat/unique - unitig 113390 created. Annotating repeats in reads for tig 1101/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2373:3109 - contained in read 53846 0- 4089 discard region 14551:16839 - contained in read 387318 8070- 18106 discard region 17935:18945 - contained in read 351744 15159- 19290 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1110/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 19961:24341 - contained in read 329753 15736- 29538 thickest edges to the repeat regions: saved region 13993:17846 - closest read 646688 ( +158) 13835:19732 ( +1886) (contained) saved region 13993:17846 - closest 5' read 646688 ( +158) 13835:19732 ( +1886) saved region 13993:17846 - closest 3' read 646688 ( +158) 13835:19732 ( +1886) search for confused edges: tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 278790 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 972 erate 0.0613 score 912.42 - absdiff 847.62 percdiff 63.4341 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 452701 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 567 erate 0.0486 score 539.44 - absdiff 1220.60 percdiff 106.1626 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 586120 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1427 erate 0.0577 score 1344.66 - absdiff 415.38 percdiff 26.7580 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 586122 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1447 erate 0.0645 score 1353.67 - absdiff 406.37 percdiff 26.1021 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 657247 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1850 erate 0.0686 score 1723.09 - absdiff 36.95 percdiff 2.1217 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 657248 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1857 erate 0.0613 score 1743.17 - absdiff 16.87 percdiff 0.9634 saved region 13993:17846 - 6 best edges are potentially confused break tig 1110 into up to 3 pieces: 0 13493 unique (length 13493) 13493 18346 repeat (length 4853) 18346 29561 unique (length 11215) Creating Unitig 113391 Creating Unitig 113392 Creating Unitig 113393 For tig 1110 unique region 0 13493 - 0/ 25 reads repeat/unique - unitig 113391 created. For tig 1110 repeat region 13493 18346 - 8/ 0 reads repeat/unique - unitig 113393 created. For tig 1110 unique region 18346 29561 - 0/ 24 reads repeat/unique - unitig 113392 created. Annotating repeats in reads for tig 1112/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5505:7327 - contained in read 72114 0- 9032 discard region 13119:14936 - contained in read 125237 10170- 16097 discard region 15492:16117 - contained in read 125238 10370- 16117 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1114/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 760:1618 - contained in read 74510 0- 5998 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1115/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1119/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5159:7352 - contained in read 206941 137- 7352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1120/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7926:8620 - contained in read 161921 2979- 9985 discard region 10475:11289 - contained in read 502516 7677- 13000 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1121/113047. Annotated with 154 overlaps. Scan reads to discard spanned repeats. discard region 6307:11769 - contained in read 625301 5332- 14955 thickest edges to the repeat regions: saved region 19038:21509 - closest 5' read 608541 ( +0) 19038:21347 ( -162) saved region 19038:21509 - closest 3' read 593620 ( -5) 19043:24625 ( +3116) search for confused edges: discard region 19038:21509 - no confusion in best edges Annotating repeats in reads for tig 1125/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 1808:2985 - contained in read 97585 0- 5843 discard region 5852:5265 - contained in read 97585 0- 5843 discard region 9224:12715 - contained in read 24124 5197- 12715 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1126/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1132/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 0:7251 - contained in read 105744 0- 9117 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1134/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 16490:19327 - contained in read 241948 13684- 19623 thickest edges to the repeat regions: saved region 11658:14267 - closest read 553503 ( +3699) 7959:14483 ( +216) (contained) saved region 11658:14267 - closest read 517888 ( +0) 11658:18927 ( +4660) (contained) saved region 11658:14267 - closest 5' read 517888 ( +0) 11658:18927 ( +4660) saved region 11658:14267 - closest 3' read 553503 ( +3699) 7959:14483 ( +216) search for confused edges: discard region 11658:14267 - no confusion in best edges Annotating repeats in reads for tig 1135/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1137/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13203:27964 - closest 5' read 416767 ( +0) 13203:21097 ( -6867) saved region 13203:27964 - closest 3' read 427142 ( -7223) 20426:35804 ( +7840) search for confused edges: tig 1137 read 40746 pos 13860-21595 IS confused by 5' edge to read 324329 - best edge read 269128 len 7430 erate 0.0233 score 7256.88 - alt edge len 5515 erate 0.0536 score 5219.40 - absdiff 2037.49 percdiff 32.6617 tig 1137 read 516979 pos 14839-22255 NOT confused by 3' edge to read 324329 - best edge read 40746 len 6676 erate 0.0198 score 6543.82 - alt edge len 4524 erate 0.0520 score 4288.75 - absdiff 2255.06 percdiff 41.6349 tig 1137 read 70234 pos 15807-25148 NOT confused by 5' edge to read 298285 - best edge read 695734 len 6134 erate 0.0687 score 5712.59 - alt edge len 725 erate 0.0361 score 698.83 - absdiff 5013.77 percdiff 156.4011 tig 1137 read 70234 pos 15807-25148 NOT confused by 5' edge to read 298287 - best edge read 695734 len 6134 erate 0.0687 score 5712.59 - alt edge len 738 erate 0.0382 score 709.81 - absdiff 5002.79 percdiff 155.7917 tig 1137 read 70234 pos 15807-25148 NOT confused by 3' edge to read 324329 - best edge read 516979 len 6384 erate 0.0123 score 6305.48 - alt edge len 3547 erate 0.0403 score 3404.06 - absdiff 2901.42 percdiff 59.7644 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 135411 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 905 erate 0.0424 score 866.63 - absdiff 5000.56 percdiff 148.5209 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 236680 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3751 erate 0.0171 score 3686.86 - absdiff 2180.33 percdiff 45.6421 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 236682 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3740 erate 0.0196 score 3666.70 - absdiff 2200.49 percdiff 46.1615 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 263738 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 922 erate 0.0423 score 883.00 - absdiff 4984.19 percdiff 147.6756 tig 1137 read 695734 pos 19199-27874 NOT confused by 5' edge to read 298285 - best edge read 427143 len 7056 erate 0.0134 score 6961.45 - alt edge len 3046 erate 0.0698 score 2833.39 - absdiff 4128.06 percdiff 84.2905 tig 1137 read 695734 pos 19199-27874 NOT confused by 5' edge to read 298287 - best edge read 427143 len 7056 erate 0.0134 score 6961.45 - alt edge len 3059 erate 0.0724 score 2837.53 - absdiff 4123.92 percdiff 84.1704 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 308582 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 732 erate 0.0533 score 692.98 - absdiff 5174.21 percdiff 157.7460 tig 1137 read 695734 pos 19199-27874 NOT confused by 5' edge to read 342347 - best edge read 427143 len 7056 erate 0.0134 score 6961.45 - alt edge len 2086 erate 0.0289 score 2025.71 - absdiff 4935.73 percdiff 109.8397 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 408511 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3823 erate 0.0295 score 3710.22 - absdiff 2156.97 percdiff 45.0428 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 408514 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3810 erate 0.0226 score 3723.89 - absdiff 2143.30 percdiff 44.6935 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 592069 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 1059 erate 0.0312 score 1025.96 - absdiff 4841.23 percdiff 140.4650 tig 1137 read 427143 pos 20161-27952 NOT confused by 3' edge to read 149461 - best edge read 427142 len 7635 erate 0.0170 score 7505.20 - alt edge len 4507 erate 0.0448 score 4305.09 - absdiff 3200.12 percdiff 54.1920 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 236680 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2183 erate 0.0096 score 2162.04 - absdiff 4807.30 percdiff 105.2918 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 236682 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2172 erate 0.0125 score 2144.85 - absdiff 4824.49 percdiff 105.8677 tig 1137 read 427143 pos 20161-27952 NOT confused by 3' edge to read 342347 - best edge read 427142 len 7635 erate 0.0170 score 7505.20 - alt edge len 2765 erate 0.0243 score 2697.81 - absdiff 4807.39 percdiff 94.2348 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 408511 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2255 erate 0.0151 score 2220.95 - absdiff 4748.39 percdiff 103.3350 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 408514 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2242 erate 0.0188 score 2199.85 - absdiff 4769.49 percdiff 104.0330 tig 1137 read 427143 pos 20161-27952 NOT confused by 3' edge to read 479900 - best edge read 427142 len 7635 erate 0.0170 score 7505.20 - alt edge len 1109 erate 0.0721 score 1029.04 - absdiff 6476.16 percdiff 151.7689 saved region 13203:27964 - 1 best edges are potentially confused break tig 1137 into up to 3 pieces: 0 12703 unique (length 12703) 12703 28464 repeat (length 15761) 28464 38062 unique (length 9598) Creating Unitig 113394 Creating Unitig 113395 Creating Unitig 113396 For tig 1137 unique region 0 12703 - 0/ 12 reads repeat/unique - unitig 113394 created. For tig 1137 repeat region 12703 28464 - 66/ 0 reads repeat/unique - unitig 113395 created. For tig 1137 unique region 28464 38062 - 0/ 18 reads repeat/unique - unitig 113396 created. Annotating repeats in reads for tig 1138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1140/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:3746 - contained in read 30452 0- 7738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1141/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 3235:1808 - contained in read 121629 0- 5496 discard region 4233:5528 - contained in read 178373 1063- 10940 thickest edges to the repeat regions: saved region 18326:22437 - closest read 377787 ( +0) 18326:26180 ( +3743) (contained) saved region 18326:22437 - closest 5' read 377787 ( +0) 18326:26180 ( +3743) saved region 18326:22437 - closest 3' read 377787 ( +0) 18326:26180 ( +3743) search for confused edges: discard region 18326:22437 - no confusion in best edges Annotating repeats in reads for tig 1144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1153/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 27648:27055 - contained in read 47401 20430- 27648 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1157/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13347:18097 - contained in read 297821 12486- 19761 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1160/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 7849:9771 - contained in read 70687 4315- 10747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1162/113047. Annotated with 130 overlaps. Scan reads to discard spanned repeats. discard region 15290:16340 - contained in read 619821 7386- 18009 thickest edges to the repeat regions: saved region 7386:14160 - closest read 619821 ( +0) 7386:18009 ( +3849) (contained) saved region 7386:14160 - closest 5' read 619821 ( +0) 7386:18009 ( +3849) saved region 7386:14160 - closest 3' read 619821 ( +0) 7386:18009 ( +3849) search for confused edges: tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 9014 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 581 erate 0.0588 score 546.84 - absdiff 5152.72 percdiff 164.9822 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 66401 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 840 erate 0.0312 score 813.79 - absdiff 4885.76 percdiff 150.0231 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 66402 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 600 erate 0.0667 score 559.98 - absdiff 5139.57 percdiff 164.2159 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 122235 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 3633 erate 0.0523 score 3442.99 - absdiff 2256.56 percdiff 49.3639 tig 1162 read 603641 pos 7393-13972 IS confused by 3' edge to read 298023 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 5915 erate 0.0359 score 5702.65 - absdiff 3.10 percdiff 0.0543 tig 1162 read 603641 pos 7393-13972 NOT confused by 5' edge to read 304590 - best edge read 298022 len 6510 erate 0.0334 score 6292.57 - alt edge len 958 erate 0.0480 score 912.02 - absdiff 5380.55 percdiff 149.3647 tig 1162 read 603641 pos 7393-13972 NOT confused by 5' edge to read 304591 - best edge read 298022 len 6510 erate 0.0334 score 6292.57 - alt edge len 987 erate 0.0537 score 934.00 - absdiff 5358.57 percdiff 148.3020 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 309402 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1315 erate 0.0485 score 1251.22 - absdiff 4448.33 percdiff 127.9952 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 309406 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1312 erate 0.0518 score 1244.04 - absdiff 4455.52 percdiff 128.3346 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 411741 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1144 erate 0.0647 score 1069.98 - absdiff 4629.57 percdiff 136.7766 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 509838 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1809 erate 0.0664 score 1688.88 - absdiff 4010.67 percdiff 108.5662 tig 1162 read 603641 pos 7393-13972 IS confused by 3' edge to read 650683 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 3846 erate 0.0486 score 3659.08 - absdiff 2040.47 percdiff 43.6061 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 9014 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 583 erate 0.0556 score 550.59 - absdiff 5779.35 percdiff 167.9917 tig 1162 read 479966 pos 7417-14112 NOT confused by 3' edge to read 18078 - best edge read 619821 len 6611 erate 0.0344 score 6383.58 - alt edge len 513 erate 0.0316 score 496.79 - absdiff 5886.79 percdiff 171.1185 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 66401 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 843 erate 0.0337 score 814.59 - absdiff 5515.34 percdiff 154.3936 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 66402 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 602 erate 0.0701 score 559.80 - absdiff 5770.13 percdiff 167.4995 tig 1162 read 479966 pos 7417-14112 IS confused by 5' edge to read 298023 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 5876 erate 0.0329 score 5682.68 - absdiff 647.26 percdiff 10.7763 tig 1162 read 479966 pos 7417-14112 NOT confused by 3' edge to read 304590 - best edge read 619821 len 6611 erate 0.0344 score 6383.58 - alt edge len 1098 erate 0.0609 score 1031.13 - absdiff 5352.45 percdiff 144.3737 tig 1162 read 479966 pos 7417-14112 NOT confused by 3' edge to read 304591 - best edge read 619821 len 6611 erate 0.0344 score 6383.58 - alt edge len 1127 erate 0.0638 score 1055.10 - absdiff 5328.48 percdiff 143.2643 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 309402 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 1323 erate 0.0479 score 1259.63 - absdiff 5070.31 percdiff 133.6126 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 309406 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 1320 erate 0.0513 score 1252.28 - absdiff 5077.65 percdiff 133.9357 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 411741 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 1147 erate 0.0636 score 1074.05 - absdiff 5255.88 percdiff 141.9745 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 628694 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 984 erate 0.0424 score 942.28 - absdiff 5387.66 percdiff 148.1710 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 650683 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 3808 erate 0.0494 score 3619.88 - absdiff 2710.05 percdiff 54.4744 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 9014 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 570 erate 0.0667 score 531.98 - absdiff 5697.76 percdiff 168.5298 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 66401 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 829 erate 0.0338 score 800.98 - absdiff 5428.76 percdiff 154.4297 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 253938 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 3245 erate 0.0595 score 3051.92 - absdiff 3177.81 percdiff 68.4751 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 292626 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 1397 erate 0.0723 score 1296.00 - absdiff 4933.74 percdiff 131.1165 tig 1162 read 298022 pos 7434-14019 IS confused by 3' edge to read 298023 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 5857 erate 0.0145 score 5772.07 - absdiff 457.66 percdiff 7.6266 tig 1162 read 298022 pos 7434-14019 NOT confused by 5' edge to read 304590 - best edge read 479966 len 6501 erate 0.0293 score 6310.52 - alt edge len 1001 erate 0.0543 score 946.65 - absdiff 5363.88 percdiff 147.8228 tig 1162 read 298022 pos 7434-14019 NOT confused by 5' edge to read 304591 - best edge read 479966 len 6501 erate 0.0293 score 6310.52 - alt edge len 1030 erate 0.0595 score 968.72 - absdiff 5341.81 percdiff 146.7683 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 309402 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 1296 erate 0.0224 score 1266.97 - absdiff 4962.77 percdiff 132.3986 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 309406 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 1293 erate 0.0256 score 1259.90 - absdiff 4969.84 percdiff 132.7124 saved region 7386:14160 - 4 best edges are potentially confused break tig 1162 into up to 3 pieces: 0 6886 unique (length 6886) 6886 14660 repeat (length 7774) 14660 18639 unique (length 3979) Creating Unitig 113397 Creating Unitig 113398 Creating Unitig 113399 For tig 1162 unique region 0 6886 - 0/ 11 reads repeat/unique - unitig 113397 created. For tig 1162 repeat region 6886 14660 - 25/ 0 reads repeat/unique - unitig 113399 created. For tig 1162 unique region 14660 18639 - 0/ 13 reads repeat/unique - unitig 113398 created. Annotating repeats in reads for tig 1163/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 21041:22104 - contained in read 627070 13481- 23190 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1164/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13667:12544 - contained in read 527714 7957- 16250 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1167/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4512:7193 - contained in read 260324 3327- 8170 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1171/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3970:2818 - contained in read 621794 0- 5437 discard region 4012:2862 - contained in read 621794 0- 5437 discard region 26520:27088 - contained in read 229581 18237- 28246 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1174/113047. Annotated with 112 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15073:21984 - closest 5' read 368503 (+11435) 3638:20681 ( -1303) saved region 15073:21984 - closest 3' read 121478 ( -4098) 19171:29768 ( +7784) saved region 35685:36757 - closest read 711221 ( +0) 35685:42496 ( +5739) (contained) saved region 35685:36757 - closest 5' read 711221 ( +0) 35685:42496 ( +5739) saved region 35685:36757 - closest 3' read 711221 ( +0) 35685:42496 ( +5739) search for confused edges: tig 1174 read 121478 pos 19171-29768 IS confused by 3' edge to read 609233 - best edge read 368503 len 1472 erate 0.0611 score 1382.06 - alt edge len 1286 erate 0.0709 score 1194.82 - absdiff 187.24 percdiff 14.5321 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 59025 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 788 erate 0.0586 score 741.82 - absdiff 9.63 percdiff 1.2894 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 70990 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 786 erate 0.0360 score 757.70 - absdiff 6.25 percdiff 0.8288 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 181800 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 788 erate 0.0700 score 732.84 - absdiff 18.61 percdiff 2.5076 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 190300 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 795 erate 0.0702 score 739.19 - absdiff 12.26 percdiff 1.6448 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 661799 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 714 erate 0.0623 score 669.52 - absdiff 81.93 percdiff 11.5319 saved region 15073:21984 - 1 best edges are potentially confused saved region 35685:36757 - 5 best edges are potentially confused break tig 1174 into up to 5 pieces: 0 14573 unique (length 14573) 14573 22484 repeat (length 7911) 22484 35185 unique (length 12701) 35185 37257 repeat (length 2072) 37257 52853 unique (length 15596) Creating Unitig 113400 Creating Unitig 113401 Creating Unitig 113402 Creating Unitig 113403 For tig 1174 unique region 0 14573 - 0/ 15 reads repeat/unique - unitig 113400 created. For tig 1174 repeat region 14573 22484 - 1/ 0 reads repeat/unique - unitig 113401 created. For tig 1174 unique region 22484 35185 - 0/ 41 reads repeat/unique - unitig 113402 created. For tig 1174 repeat region 35185 37257 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1174 unique region 37257 52853 - 0/ 15 reads repeat/unique - unitig 113403 created. Annotating repeats in reads for tig 1175/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3844:6504 - contained in read 700913 0- 9671 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1179/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1180/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 24459:28161 - contained in read 668068 18928- 28161 thickest edges to the repeat regions: saved region 11677:24409 - closest 5' read 382307 ( +3298) 8379:19391 ( -5018) saved region 11677:24409 - closest 3' read 339921 ( -4093) 15770:25109 ( +700) search for confused edges: tig 1180 read 407178 pos 13725-19766 NOT confused by 5' edge to read 30453 - best edge read 382307 len 5634 erate 0.0130 score 5560.76 - alt edge len 1695 erate 0.0229 score 1656.18 - absdiff 3904.57 percdiff 108.2058 tig 1180 read 407178 pos 13725-19766 IS confused by 5' edge to read 81572 - best edge read 382307 len 5634 erate 0.0130 score 5560.76 - alt edge len 4007 erate 0.0221 score 3918.45 - absdiff 1642.31 percdiff 34.6509 tig 1180 read 407178 pos 13725-19766 IS confused by 5' edge to read 396629 - best edge read 382307 len 5634 erate 0.0130 score 5560.76 - alt edge len 4632 erate 0.0302 score 4492.11 - absdiff 1068.64 percdiff 21.2605 tig 1180 read 230504 pos 15668-19777 IS confused by 5' edge to read 81572 - best edge read 407178 len 4062 erate 0.0264 score 3954.76 - alt edge len 2051 erate 0.0352 score 1978.80 - absdiff 1975.96 percdiff 66.6027 tig 1180 read 230504 pos 15668-19777 IS confused by 5' edge to read 396629 - best edge read 407178 len 4062 erate 0.0264 score 3954.76 - alt edge len 2682 erate 0.0478 score 2553.80 - absdiff 1400.96 percdiff 43.0498 tig 1180 read 339921 pos 15770-25109 IS confused by 3' edge to read 81572 - best edge read 230504 len 3978 erate 0.0237 score 3883.72 - alt edge len 1965 erate 0.0219 score 1921.97 - absdiff 1961.75 percdiff 67.5804 tig 1180 read 339921 pos 15770-25109 IS confused by 3' edge to read 396629 - best edge read 230504 len 3978 erate 0.0237 score 3883.72 - alt edge len 2589 erate 0.0406 score 2483.89 - absdiff 1399.83 percdiff 43.9674 saved region 11677:24409 - 6 best edges are potentially confused break tig 1180 into up to 3 pieces: 0 11177 unique (length 11177) 11177 24909 repeat (length 13732) 24909 28161 unique (length 3252) Creating Unitig 113404 Creating Unitig 113405 Creating Unitig 113406 For tig 1180 unique region 0 11177 - 0/ 11 reads repeat/unique - unitig 113404 created. For tig 1180 repeat region 11177 24909 - 15/ 0 reads repeat/unique - unitig 113405 created. For tig 1180 unique region 24909 28161 - 0/ 7 reads repeat/unique - unitig 113406 created. Annotating repeats in reads for tig 1182/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7033:4749 - contained in read 296370 339- 7936 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1186/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 1030:2168 - contained in read 374826 0- 5930 discard region 6646:13886 - contained in read 588059 5814- 17309 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1192/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17404:16844 - contained in read 435941 10216- 20839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1194/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21226:26424 - closest read 564493 ( +1500) 19726:26424 ( +0) (contained) saved region 21226:26424 - closest 5' read 564493 ( +1500) 19726:26424 ( +0) saved region 21226:26424 - closest 3' read 564493 ( +1500) 19726:26424 ( +0) search for confused edges: discard region 21226:26424 - no confusion in best edges Annotating repeats in reads for tig 1198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1199/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 14041:15168 - contained in read 385406 8451- 17362 discard region 16892:17602 - contained in read 179969 13767- 20094 thickest edges to the repeat regions: saved region 3677:11961 - closest 5' read 428042 ( +2710) 967:9994 ( -1967) saved region 3677:11961 - closest 3' read 238969 ( -2434) 6111:13021 ( +1060) search for confused edges: discard region 3677:11961 - no confusion in best edges Annotating repeats in reads for tig 1203/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4443:7758 - contained in read 371405 0- 10002 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1205/113047. Annotated with 158 overlaps. Scan reads to discard spanned repeats. discard region 43727:44629 - contained in read 482730 32889- 46762 thickest edges to the repeat regions: saved region 25124:41012 - closest 5' read 141581 ( +0) 25124:31983 ( -9029) saved region 25124:41012 - closest 3' read 474176 ( -5536) 30660:44664 ( +3652) search for confused edges: tig 1205 read 616878 pos 29063-36043 IS confused by 5' edge to read 141580 - best edge read 141581 len 2489 erate 0.0359 score 2399.64 - alt edge len 2474 erate 0.0459 score 2360.44 - absdiff 39.20 percdiff 1.6471 tig 1205 read 616877 pos 29086-36047 NOT confused by 3' edge to read 141580 - best edge read 616878 len 6921 erate 0.0143 score 6822.03 - alt edge len 2448 erate 0.0380 score 2354.98 - absdiff 4467.05 percdiff 97.3532 saved region 25124:41012 - 1 best edges are potentially confused break tig 1205 into up to 3 pieces: 0 24624 unique (length 24624) 24624 41512 repeat (length 16888) 41512 46762 unique (length 5250) Creating Unitig 113407 Creating Unitig 113408 Creating Unitig 113409 For tig 1205 unique region 0 24624 - 0/ 51 reads repeat/unique - unitig 113407 created. For tig 1205 repeat region 24624 41512 - 37/ 0 reads repeat/unique - unitig 113408 created. For tig 1205 unique region 41512 46762 - 0/ 29 reads repeat/unique - unitig 113409 created. Annotating repeats in reads for tig 1206/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 12012:13188 - contained in read 486506 8730- 16925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1210/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3135:2312 - contained in read 377462 1180- 3269 discard region 3269:2322 - contained in read 377462 1180- 3269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1213/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1216/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17134:26597 - closest 5' read 217665 ( +766) 16368:25601 ( -996) saved region 17134:26597 - closest 3' read 549868 ( -7) 17141:26597 ( +0) search for confused edges: discard region 17134:26597 - no confusion in best edges Annotating repeats in reads for tig 1217/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 9135:12573 - contained in read 484214 7628- 14049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1228/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3953:10928 - closest 5' read 529232 ( +989) 2964:10039 ( -889) saved region 3953:10928 - closest 3' read 568179 ( -9) 3962:12233 ( +1305) search for confused edges: tig 1228 read 529232 pos 2964-10039 IS confused by 5' edge to read 105415 - best edge read 568179 len 5927 erate 0.0518 score 5619.98 - alt edge len 4564 erate 0.0285 score 4433.93 - absdiff 1186.06 percdiff 23.5939 saved region 3953:10928 - 1 best edges are potentially confused break tig 1228 into up to 3 pieces: 0 3453 unique (length 3453) 3453 11428 repeat (length 7975) 11428 27933 unique (length 16505) Creating Unitig 113410 Creating Unitig 113411 Creating Unitig 113412 For tig 1228 unique region 0 3453 - 0/ 20 reads repeat/unique - unitig 113410 created. For tig 1228 repeat region 3453 11428 - 10/ 0 reads repeat/unique - unitig 113411 created. For tig 1228 unique region 11428 27933 - 0/ 22 reads repeat/unique - unitig 113412 created. Annotating repeats in reads for tig 1229/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11437:15373 - contained in read 219343 9437- 15724 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1230/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6424:6945 - contained in read 66697 522- 10102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1236/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 14864:12719 - contained in read 614217 7013- 17288 discard region 18879:16689 - contained in read 614217 7013- 17288 thickest edges to the repeat regions: saved region 6189:10585 - closest 5' read 475135 ( +2216) 3973:10433 ( -152) saved region 6189:10585 - closest 3' read 614217 ( -824) 7013:17288 ( +6703) search for confused edges: discard region 6189:10585 - no confusion in best edges Annotating repeats in reads for tig 1237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1243/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 2499:9806 - contained in read 502457 164- 9806 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1247/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 22299:24628 - contained in read 605152 19329- 24661 thickest edges to the repeat regions: saved region 12797:14526 - closest read 163344 ( +4303) 8494:14526 ( +0) (contained) saved region 12797:14526 - closest 5' read 163344 ( +4303) 8494:14526 ( +0) saved region 12797:14526 - closest 3' read 163344 ( +4303) 8494:14526 ( +0) search for confused edges: discard region 12797:14526 - no confusion in best edges Annotating repeats in reads for tig 1249/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9204:8532 - contained in read 371662 4535- 10820 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1250/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 14525:16387 - contained in read 296597 11827- 17135 discard region 18387:19249 - contained in read 372301 15226- 24344 discard region 19815:22886 - contained in read 372301 15226- 24344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1254/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 7111:5927 - contained in read 480961 0- 8247 discard region 7331:8473 - contained in read 92830 4220- 12165 thickest edges to the repeat regions: saved region 16149:23240 - closest 5' read 381646 ( +1419) 14730:23010 ( -230) saved region 16149:23240 - closest 3' read 416089 ( -5931) 22080:30286 ( +7046) search for confused edges: discard region 16149:23240 - no confusion in best edges Annotating repeats in reads for tig 1255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1259/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 0:7129 - contained in read 93331 0- 8266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1263/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 0:7230 - contained in read 363392 0- 8995 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1264/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 23281:27242 - closest read 234493 ( +4451) 18830:27242 ( +0) (contained) saved region 23281:27242 - closest 5' read 234493 ( +4451) 18830:27242 ( +0) saved region 23281:27242 - closest 3' read 234493 ( +4451) 18830:27242 ( +0) search for confused edges: discard region 23281:27242 - no confusion in best edges Annotating repeats in reads for tig 1266/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2850:6790 - contained in read 366931 1935- 6790 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1274/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4706:4042 - contained in read 206280 0- 7331 discard region 16384:17441 - contained in read 523444 12806- 20116 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1275/113047. Annotated with 599 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15475:22281 - closest read 343655 ( +0) 15475:24527 ( +2246) (contained) saved region 15475:22281 - closest 5' read 343655 ( +0) 15475:24527 ( +2246) saved region 15475:22281 - closest 3' read 343655 ( +0) 15475:24527 ( +2246) search for confused edges: tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 22359 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 681 erate 0.0499 score 647.02 - absdiff 3933.04 percdiff 150.4872 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 51901 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1969 erate 0.0340 score 1902.05 - absdiff 2678.01 percdiff 82.6275 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 58022 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1983 erate 0.0673 score 1849.54 - absdiff 2730.51 percdiff 84.9357 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 58024 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1984 erate 0.0682 score 1848.69 - absdiff 2731.37 percdiff 84.9735 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 94998 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 4606 erate 0.0366 score 4437.42 - absdiff 142.64 percdiff 3.1636 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 110294 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2339 erate 0.0374 score 2251.52 - absdiff 2328.54 percdiff 68.1698 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 121352 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3413 erate 0.0275 score 3319.14 - absdiff 1260.92 percdiff 31.9252 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 139609 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 678 erate 0.0636 score 634.88 - absdiff 3945.18 percdiff 151.3030 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 235869 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1592 erate 0.0515 score 1510.01 - absdiff 3070.05 percdiff 100.8214 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 243906 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3427 erate 0.0383 score 3295.75 - absdiff 1284.31 percdiff 32.6141 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 249636 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 675 erate 0.0402 score 647.87 - absdiff 3932.19 percdiff 150.4304 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 249637 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 667 erate 0.0483 score 634.78 - absdiff 3945.28 percdiff 151.3095 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 283291 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2125 erate 0.0598 score 1997.93 - absdiff 2582.13 percdiff 78.5084 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 344824 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2133 erate 0.0680 score 1987.96 - absdiff 2592.10 percdiff 78.9311 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 380859 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1152 erate 0.0538 score 1090.02 - absdiff 3490.04 percdiff 123.1036 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 406522 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 800 erate 0.0588 score 752.96 - absdiff 3827.10 percdiff 143.5247 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 406523 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 769 erate 0.0468 score 733.01 - absdiff 3847.05 percdiff 144.8145 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 406982 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1696 erate 0.0483 score 1614.08 - absdiff 2965.98 percdiff 95.7671 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 438766 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3860 erate 0.0484 score 3673.18 - absdiff 906.88 percdiff 21.9764 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 477357 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3675 erate 0.0218 score 3594.88 - absdiff 985.17 percdiff 24.1023 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 498841 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3621 erate 0.0295 score 3514.18 - absdiff 1065.88 percdiff 26.3367 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 498843 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3594 erate 0.0298 score 3486.90 - absdiff 1093.16 percdiff 27.1022 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 521261 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 535 erate 0.0393 score 513.97 - absdiff 4066.08 percdiff 159.6411 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 521262 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 536 erate 0.0429 score 513.01 - absdiff 4067.05 percdiff 159.7095 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 554990 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1196 erate 0.0535 score 1132.01 - absdiff 3448.05 percdiff 120.7283 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 588779 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3000 erate 0.0370 score 2889.00 - absdiff 1691.06 percdiff 45.2817 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 628925 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 4606 erate 0.0378 score 4431.89 - absdiff 148.17 percdiff 3.2882 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 642130 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1587 erate 0.0523 score 1504.00 - absdiff 3076.06 percdiff 101.1186 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 651660 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2321 erate 0.0521 score 2200.08 - absdiff 2379.98 percdiff 70.2046 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 651661 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2337 erate 0.0524 score 2214.54 - absdiff 2365.52 percdiff 69.6293 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 651662 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2342 erate 0.0532 score 2217.41 - absdiff 2362.65 percdiff 69.5157 saved region 15475:22281 - 9 best edges are potentially confused break tig 1275 into up to 3 pieces: 0 14975 unique (length 14975) 14975 22781 repeat (length 7806) 22781 24648 unique (length 1867) Creating Unitig 113413 Creating Unitig 113414 Creating Unitig 113415 For tig 1275 unique region 0 14975 - 0/ 16 reads repeat/unique - unitig 113413 created. For tig 1275 repeat region 14975 22781 - 15/ 0 reads repeat/unique - unitig 113415 created. For tig 1275 unique region 22781 24648 - 0/ 3 reads repeat/unique - unitig 113414 created. Annotating repeats in reads for tig 1278/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 9055:12805 - contained in read 280154 7144- 13845 discard region 13894:15962 - contained in read 321976 9089- 18603 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1288/113047. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 0:3279 - contained in read 75217 0- 4967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1289/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 15697:17325 - contained in read 360791 12074- 20201 thickest edges to the repeat regions: saved region 19170:22044 - closest read 482314 ( +3761) 15409:22044 ( +0) (contained) saved region 19170:22044 - closest 5' read 482314 ( +3761) 15409:22044 ( +0) saved region 19170:22044 - closest 3' read 482314 ( +3761) 15409:22044 ( +0) search for confused edges: discard region 19170:22044 - no confusion in best edges Annotating repeats in reads for tig 1294/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 12721:15204 - contained in read 703923 10223- 17066 thickest edges to the repeat regions: saved region 5658:11738 - closest read 647696 ( +22) 5636:11738 ( +0) (contained) saved region 5658:11738 - closest read 438785 ( +21) 5637:13866 ( +2128) (contained) saved region 5658:11738 - closest 5' read 438785 ( +21) 5637:13866 ( +2128) saved region 5658:11738 - closest 3' read 647696 ( +22) 5636:11738 ( +0) search for confused edges: discard region 5658:11738 - no confusion in best edges Annotating repeats in reads for tig 1297/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 16832:14920 - contained in read 560528 10756- 17302 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1298/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1526:872 - contained in read 622076 0- 6122 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1301/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 4607:6179 - contained in read 432007 326- 6179 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1303/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1425:3040 - contained in read 93993 0- 6553 discard region 5482:6553 - contained in read 403036 159- 8016 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1314/113047. Annotated with 136 overlaps. Scan reads to discard spanned repeats. discard region 17050:21202 - contained in read 446597 15179- 21202 thickest edges to the repeat regions: saved region 2984:12143 - closest 5' read 714581 ( +0) 2984:8430 ( -3713) saved region 2984:12143 - closest 3' read 10157 ( -3147) 6131:12143 ( +0) search for confused edges: tig 1314 read 599230 pos 2106-8236 IS confused by 5' edge to read 171350 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 2863 erate 0.0301 score 2776.82 - absdiff 1843.82 percdiff 49.8501 tig 1314 read 599230 pos 2106-8236 NOT confused by 5' edge to read 171722 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 757 erate 0.0411 score 725.89 - absdiff 3894.76 percdiff 145.6929 tig 1314 read 599230 pos 2106-8236 IS confused by 5' edge to read 588140 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 4419 erate 0.0331 score 4272.73 - absdiff 347.92 percdiff 7.8242 tig 1314 read 599230 pos 2106-8236 IS confused by 5' edge to read 588141 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 4307 erate 0.0251 score 4198.89 - absdiff 421.75 percdiff 9.5640 tig 1314 read 714581 pos 2984-8430 NOT confused by 3' edge to read 171350 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 3059 erate 0.0223 score 2990.78 - absdiff 2203.83 percdiff 53.8478 tig 1314 read 714581 pos 2984-8430 NOT confused by 3' edge to read 171722 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 941 erate 0.0404 score 902.98 - absdiff 4291.63 percdiff 140.7646 tig 1314 read 714581 pos 2984-8430 IS confused by 3' edge to read 588140 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 4578 erate 0.0321 score 4431.05 - absdiff 763.56 percdiff 15.8652 tig 1314 read 714581 pos 2984-8430 IS confused by 3' edge to read 588141 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 4480 erate 0.0221 score 4380.99 - absdiff 813.62 percdiff 16.9936 tig 1314 read 439363 pos 3029-10648 IS confused by 5' edge to read 171350 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 5222 erate 0.0140 score 5148.89 - absdiff 1616.90 percdiff 27.1413 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 171722 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 3107 erate 0.0235 score 3033.99 - absdiff 3731.81 percdiff 76.1610 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 226737 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 1455 erate 0.0405 score 1396.07 - absdiff 5369.72 percdiff 131.5807 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 274887 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 1233 erate 0.0187 score 1209.94 - absdiff 5555.85 percdiff 139.3188 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 297483 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 2226 erate 0.0167 score 2188.83 - absdiff 4576.97 percdiff 102.2258 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 390688 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 719 erate 0.0323 score 695.78 - absdiff 6070.02 percdiff 162.7008 tig 1314 read 439363 pos 3029-10648 IS confused by 5' edge to read 588140 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 6744 erate 0.0245 score 6578.77 - absdiff 187.02 percdiff 2.8029 tig 1314 read 439363 pos 3029-10648 IS confused by 5' edge to read 588141 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 6640 erate 0.0161 score 6533.10 - absdiff 232.70 percdiff 3.4995 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 634786 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 2034 erate 0.0665 score 1898.74 - absdiff 4867.05 percdiff 112.3443 saved region 2984:12143 - 8 best edges are potentially confused break tig 1314 into up to 3 pieces: 0 2484 unique (length 2484) 2484 12643 repeat (length 10159) 12643 21202 unique (length 8559) Creating Unitig 113416 Creating Unitig 113417 Creating Unitig 113418 For tig 1314 unique region 0 2484 - 0/ 11 reads repeat/unique - unitig 113416 created. For tig 1314 repeat region 2484 12643 - 51/ 0 reads repeat/unique - unitig 113417 created. For tig 1314 unique region 12643 21202 - 0/ 16 reads repeat/unique - unitig 113418 created. Annotating repeats in reads for tig 1320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1322/113047. Annotated with 92 overlaps. Scan reads to discard spanned repeats. discard region 5382:7456 - contained in read 658653 0- 10146 thickest edges to the repeat regions: saved region 9183:12021 - closest 5' read 485221 ( +0) 9183:11967 ( -54) saved region 9183:12021 - closest 3' read 654752 ( -547) 9730:15990 ( +3969) saved region 19827:22994 - closest 5' read 456326 ( +5638) 14189:20742 ( -2252) saved region 19827:22994 - closest 3' read 16848 ( -327) 20154:26465 ( +3471) search for confused edges: tig 1322 read 654752 pos 9730-15990 IS confused by 5' edge to read 116297 - best edge read 103154 len 2107 erate 0.0499 score 2001.86 - alt edge len 2001 erate 0.0546 score 1891.75 - absdiff 110.12 percdiff 5.6562 tig 1322 read 654752 pos 9730-15990 IS confused by 5' edge to read 177849 - best edge read 103154 len 2107 erate 0.0499 score 2001.86 - alt edge len 1888 erate 0.0584 score 1777.74 - absdiff 224.12 percdiff 11.8594 tig 1322 read 456328 pos 14187-20714 IS confused by 3' edge to read 557637 - best edge read 16848 len 562 erate 0.0680 score 523.78 - alt edge len 724 erate 0.0666 score 675.78 - absdiff 152.00 percdiff 25.3421 tig 1322 read 456328 pos 14187-20714 IS confused by 3' edge to read 694899 - best edge read 16848 len 562 erate 0.0680 score 523.78 - alt edge len 746 erate 0.0646 score 697.81 - absdiff 174.02 percdiff 28.4914 saved region 9183:12021 - 2 best edges are potentially confused saved region 19827:22994 - 2 best edges are potentially confused break tig 1322 into up to 5 pieces: 0 8683 unique (length 8683) 8683 12521 repeat (length 3838) 12521 19327 unique (length 6806) 19327 23494 repeat (length 4167) 23494 28708 unique (length 5214) Creating Unitig 113419 Creating Unitig 113420 Creating Unitig 113421 Creating Unitig 113422 Creating Unitig 113423 For tig 1322 unique region 0 8683 - 0/ 22 reads repeat/unique - unitig 113419 created. For tig 1322 repeat region 8683 12521 - 32/ 0 reads repeat/unique - unitig 113420 created. For tig 1322 unique region 12521 19327 - 0/ 12 reads repeat/unique - unitig 113421 created. For tig 1322 repeat region 19327 23494 - 1/ 0 reads repeat/unique - unitig 113423 created. For tig 1322 unique region 23494 28708 - 0/ 11 reads repeat/unique - unitig 113422 created. Annotating repeats in reads for tig 1328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1334/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 2778:4900 - contained in read 539957 0- 7095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1339/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:5903 - contained in read 362497 0- 8103 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1349/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2660:3694 - contained in read 518860 0- 5960 discard region 3776:5969 - contained in read 232426 1680- 10716 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1357/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:1532 - closest read 329504 ( +0) 0:1785 ( +253) (contained) saved region 0:1532 - closest 5' read 329504 ( +0) 0:1785 ( +253) saved region 0:1532 - closest 3' read 329504 ( +0) 0:1785 ( +253) search for confused edges: discard region 0:1532 - no confusion in best edges Annotating repeats in reads for tig 1362/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 325:1431 - contained in read 452181 0- 6612 discard region 2777:4213 - contained in read 452181 0- 6612 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1364/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19518:24186 - closest 5' read 621481 ( +0) 19518:23133 ( -1053) saved region 19518:24186 - closest 3' read 402586 ( -260) 19778:27468 ( +3282) search for confused edges: discard region 19518:24186 - no confusion in best edges Annotating repeats in reads for tig 1366/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 18534:20430 - contained in read 515936 13098- 21657 thickest edges to the repeat regions: saved region 25274:28902 - closest 5' read 345123 ( +5907) 19367:28730 ( -172) saved region 25274:28902 - closest 3' read 668585 ( -849) 26123:30028 ( +1126) search for confused edges: tig 1366 read 345124 pos 19382-28697 IS confused by 3' edge to read 149913 - best edge read 385197 len 2545 erate 0.0689 score 2369.65 - alt edge len 770 erate 0.0610 score 723.03 - absdiff 1646.62 percdiff 106.4850 saved region 25274:28902 - 1 best edges are potentially confused break tig 1366 into up to 3 pieces: 0 24774 unique (length 24774) 24774 29402 repeat (length 4628) 29402 42978 unique (length 13576) Creating Unitig 113424 Creating Unitig 113425 Creating Unitig 113426 For tig 1366 unique region 0 24774 - 0/ 45 reads repeat/unique - unitig 113424 created. For tig 1366 repeat region 24774 29402 - 3/ 0 reads repeat/unique - unitig 113426 created. For tig 1366 unique region 29402 42978 - 0/ 10 reads repeat/unique - unitig 113425 created. Annotating repeats in reads for tig 1368/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 4432:5174 - contained in read 277945 0- 7145 discard region 5578:7278 - contained in read 427742 4432- 9965 discard region 11120:12176 - contained in read 632387 6079- 15301 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1370/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1320:0 - contained in read 383347 0- 7085 discard region 2337:691 - contained in read 383347 0- 7085 discard region 3522:7174 - contained in read 604173 2221- 11304 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1384/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 652:1993 - contained in read 706661 0- 8467 discard region 28425:31623 - contained in read 686323 22134- 32197 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1386/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1390/113047. Annotated with 88 overlaps. Scan reads to discard spanned repeats. discard region 1919:3097 - contained in read 594004 0- 10187 thickest edges to the repeat regions: saved region 3786:10875 - closest 5' read 544635 ( +857) 2929:10845 ( -30) saved region 3786:10875 - closest 3' read 562968 ( -540) 4326:10875 ( +0) search for confused edges: discard region 3786:10875 - no confusion in best edges Annotating repeats in reads for tig 1392/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 8219:13308 - contained in read 27010 5904- 13308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1394/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 19682:20868 - contained in read 608395 15527- 23549 thickest edges to the repeat regions: saved region 7851:13699 - closest 5' read 583896 ( +7851) 0:13427 ( -272) saved region 7851:13699 - closest 3' read 353452 ( -264) 8115:19026 ( +5327) search for confused edges: discard region 7851:13699 - no confusion in best edges Annotating repeats in reads for tig 1397/113047. Annotated with 1659 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10057 - closest 5' read 611814 ( +0) 0:6431 ( -3626) saved region 0:10057 - closest 3' read 187559 ( -4071) 4071:10057 ( +0) search for confused edges: tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 56472 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1157 erate 0.0588 score 1088.97 - absdiff 2999.81 percdiff 115.8731 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 69514 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2332 erate 0.0343 score 2252.01 - absdiff 1836.76 percdiff 57.9348 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 73835 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3048 erate 0.0532 score 2885.85 - absdiff 1202.93 percdiff 34.4944 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 75365 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1409 erate 0.0554 score 1330.94 - absdiff 2757.83 percdiff 101.7704 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 75366 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1400 erate 0.0496 score 1330.56 - absdiff 2758.21 percdiff 101.7916 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 86124 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2823 erate 0.0465 score 2691.73 - absdiff 1397.04 percdiff 41.2077 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 125239 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 645 erate 0.0558 score 609.01 - absdiff 3479.77 percdiff 148.1450 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 137335 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3256 erate 0.0666 score 3039.15 - absdiff 1049.62 percdiff 29.4510 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 201858 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3196 erate 0.0663 score 2984.11 - absdiff 1104.67 percdiff 31.2368 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 212668 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1937 erate 0.0681 score 1805.09 - absdiff 2283.68 percdiff 77.4936 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 336357 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3710 erate 0.0400 score 3561.60 - absdiff 527.17 percdiff 13.7817 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 478039 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2356 erate 0.0531 score 2230.90 - absdiff 1857.88 percdiff 58.7967 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 532060 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3295 erate 0.0610 score 3094.01 - absdiff 994.77 percdiff 27.6987 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 546407 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3261 erate 0.0549 score 3081.97 - absdiff 1006.80 percdiff 28.0809 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 556591 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2659 erate 0.0365 score 2561.95 - absdiff 1526.83 percdiff 45.9147 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 576860 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 792 erate 0.0442 score 756.99 - absdiff 3331.78 percdiff 137.5130 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 576861 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 792 erate 0.0480 score 753.98 - absdiff 3334.79 percdiff 137.7228 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 628000 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2276 erate 0.0365 score 2192.93 - absdiff 1895.85 percdiff 60.3610 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 641325 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3742 erate 0.0564 score 3530.95 - absdiff 557.82 percdiff 14.6416 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 697592 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3373 erate 0.0741 score 3123.06 - absdiff 965.71 percdiff 26.7814 saved region 0:10057 - 13 best edges are potentially confused Annotating repeats in reads for tig 1398/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11783:18075 - closest 5' read 392088 ( +0) 11783:18018 ( -57) saved region 11783:18075 - closest 3' read 96816 ( -1094) 12877:18075 ( +0) search for confused edges: tig 1398 read 84311 pos 12924-20841 IS confused by 3' edge to read 416133 - best edge read 485358 len 2233 erate 0.0349 score 2155.07 - alt edge len 1604 erate 0.0393 score 1540.96 - absdiff 614.11 percdiff 33.2305 tig 1398 read 84311 pos 12924-20841 IS confused by 3' edge to read 416134 - best edge read 485358 len 2233 erate 0.0349 score 2155.07 - alt edge len 1613 erate 0.0322 score 1561.06 - absdiff 594.01 percdiff 31.9691 tig 1398 read 84311 pos 12924-20841 IS confused by 3' edge to read 416135 - best edge read 485358 len 2233 erate 0.0349 score 2155.07 - alt edge len 1586 erate 0.0353 score 1530.01 - absdiff 625.05 percdiff 33.9235 saved region 11783:18075 - 3 best edges are potentially confused break tig 1398 into up to 3 pieces: 0 11283 unique (length 11283) 11283 18575 repeat (length 7292) 18575 29129 unique (length 10554) Creating Unitig 113427 Creating Unitig 113428 Creating Unitig 113429 For tig 1398 unique region 0 11283 - 0/ 23 reads repeat/unique - unitig 113427 created. For tig 1398 repeat region 11283 18575 - 44/ 0 reads repeat/unique - unitig 113428 created. For tig 1398 unique region 18575 29129 - 0/ 14 reads repeat/unique - unitig 113429 created. Annotating repeats in reads for tig 1401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1402/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 8827:9494 - contained in read 632482 5742- 11089 discard region 17644:20891 - contained in read 444475 14624- 24054 thickest edges to the repeat regions: saved region 14624:16189 - closest read 444475 ( +0) 14624:24054 ( +7865) (contained) saved region 14624:16189 - closest 5' read 444475 ( +0) 14624:24054 ( +7865) saved region 14624:16189 - closest 3' read 444475 ( +0) 14624:24054 ( +7865) search for confused edges: discard region 14624:16189 - no confusion in best edges Annotating repeats in reads for tig 1403/113047. Annotated with 295 overlaps. Scan reads to discard spanned repeats. discard region 3852:11075 - contained in read 625534 648- 11075 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1404/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10567:15560 - closest read 510454 ( +1763) 8804:15595 ( +35) (contained) saved region 10567:15560 - closest read 510452 ( +1757) 8810:15601 ( +41) (contained) saved region 10567:15560 - closest read 510453 ( +1728) 8839:15598 ( +38) (contained) saved region 10567:15560 - closest read 718357 ( +0) 10567:15609 ( +49) (contained) saved region 10567:15560 - closest 5' read 718357 ( +0) 10567:15609 ( +49) saved region 10567:15560 - closest 3' read 510454 ( +1763) 8804:15595 ( +35) search for confused edges: discard region 10567:15560 - no confusion in best edges Annotating repeats in reads for tig 1410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1413/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6101:7514 - contained in read 552439 1574- 7514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1416/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 7405:9930 - contained in read 709842 4910- 12037 discard region 10342:13426 - contained in read 528357 7823- 17298 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1427/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 4967:5997 - contained in read 454275 1082- 6860 thickest edges to the repeat regions: saved region 6036:8837 - closest 5' read 206533 ( +3317) 2719:8583 ( -254) saved region 6036:8837 - closest 3' read 664209 ( -15) 6051:14581 ( +5744) search for confused edges: tig 1427 read 206532 pos 2627-8550 IS confused by 5' edge to read 208052 - best edge read 664209 len 2493 erate 0.0424 score 2387.30 - alt edge len 1502 erate 0.0382 score 1444.62 - absdiff 942.67 percdiff 49.2011 tig 1427 read 206532 pos 2627-8550 IS confused by 5' edge to read 228945 - best edge read 664209 len 2493 erate 0.0424 score 2387.30 - alt edge len 2493 erate 0.0443 score 2382.56 - absdiff 4.74 percdiff 0.1986 tig 1427 read 206532 pos 2627-8550 IS confused by 5' edge to read 654514 - best edge read 664209 len 2493 erate 0.0424 score 2387.30 - alt edge len 2493 erate 0.0504 score 2367.35 - absdiff 19.94 percdiff 0.8389 saved region 6036:8837 - 3 best edges are potentially confused break tig 1427 into up to 3 pieces: 0 5536 unique (length 5536) 5536 9337 repeat (length 3801) 9337 17449 unique (length 8112) Creating Unitig 113430 Creating Unitig 113431 Creating Unitig 113432 For tig 1427 unique region 0 5536 - 0/ 18 reads repeat/unique - unitig 113430 created. For tig 1427 repeat region 5536 9337 - 7/ 0 reads repeat/unique - unitig 113432 created. For tig 1427 unique region 9337 17449 - 0/ 20 reads repeat/unique - unitig 113431 created. Annotating repeats in reads for tig 1438/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 7412:12904 - contained in read 18222 6231- 12904 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1442/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 0:5773 - contained in read 659609 0- 11688 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1443/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11169:17580 - closest read 645401 ( +0) 11169:19847 ( +2267) (contained) saved region 11169:17580 - closest 5' read 645401 ( +0) 11169:19847 ( +2267) saved region 11169:17580 - closest 3' read 645401 ( +0) 11169:19847 ( +2267) search for confused edges: tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 127001 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 1119 erate 0.0268 score 1089.01 - absdiff 4025.82 percdiff 129.7848 tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 169712 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 1317 erate 0.0373 score 1267.88 - absdiff 3846.96 percdiff 120.5431 tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 267562 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 2821 erate 0.0314 score 2732.42 - absdiff 2382.41 percdiff 60.7196 tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 437815 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 2382 erate 0.0261 score 2319.83 - absdiff 2795.00 percdiff 75.1884 discard region 11169:17580 - no confusion in best edges Annotating repeats in reads for tig 1450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1451/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2451:4865 - closest read 1215 ( +2451) 0:4865 ( +0) (contained) saved region 2451:4865 - closest read 273307 ( +497) 1954:7919 ( +3054) (contained) saved region 2451:4865 - closest read 273308 ( +482) 1969:7906 ( +3041) (contained) saved region 2451:4865 - closest read 273309 ( +118) 2333:7910 ( +3045) (contained) saved region 2451:4865 - closest 5' read 273307 ( +497) 1954:7919 ( +3054) saved region 2451:4865 - closest 3' read 1215 ( +2451) 0:4865 ( +0) search for confused edges: discard region 2451:4865 - no confusion in best edges Annotating repeats in reads for tig 1452/113047. Annotated with 209 overlaps. Scan reads to discard spanned repeats. discard region 405:14999 - contained in read 586910 0- 16601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1456/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 22722:25195 - contained in read 618697 20166- 26866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1457/113047. Annotated with 225 overlaps. Scan reads to discard spanned repeats. discard region 27756:30473 - contained in read 95411 26398- 34317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1462/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19920:23734 - closest read 13695 ( +2724) 17196:23734 ( +0) (contained) saved region 19920:23734 - closest 5' read 13695 ( +2724) 17196:23734 ( +0) saved region 19920:23734 - closest 3' read 13695 ( +2724) 17196:23734 ( +0) search for confused edges: discard region 19920:23734 - no confusion in best edges Annotating repeats in reads for tig 1463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1465/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 0:7097 - contained in read 578689 0- 9844 discard region 7420:10852 - contained in read 15531 2758- 14121 discard region 12473:14121 - contained in read 15531 2758- 14121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1471/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7896:8655 - contained in read 227998 5752- 11502 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1473/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 1839:7291 - contained in read 23253 152- 7291 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1476/113047. Annotated with 158 overlaps. Scan reads to discard spanned repeats. discard region 23642:29719 - contained in read 46817 21631- 29771 thickest edges to the repeat regions: saved region 7532:12808 - closest read 353963 ( +378) 7154:13336 ( +528) (contained) saved region 7532:12808 - closest read 353964 ( +0) 7532:12808 ( +0) (contained) saved region 7532:12808 - closest 5' read 353963 ( +378) 7154:13336 ( +528) saved region 7532:12808 - closest 3' read 353963 ( +378) 7154:13336 ( +528) saved region 21631:22529 - closest read 160257 ( +4881) 16750:22539 ( +10) (contained) saved region 21631:22529 - closest read 46817 ( +0) 21631:29771 ( +7242) (contained) saved region 21631:22529 - closest 5' read 46817 ( +0) 21631:29771 ( +7242) saved region 21631:22529 - closest 3' read 160257 ( +4881) 16750:22539 ( +10) search for confused edges: tig 1476 read 353965 pos 8205-13337 IS confused by 3' edge to read 55140 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 4250 erate 0.0573 score 4006.47 - absdiff 64.28 percdiff 1.5917 tig 1476 read 353965 pos 8205-13337 NOT confused by 3' edge to read 570206 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 888 erate 0.0580 score 836.50 - absdiff 3234.26 percdiff 131.8156 tig 1476 read 353965 pos 8205-13337 NOT confused by 3' edge to read 570207 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 889 erate 0.0534 score 841.53 - absdiff 3229.23 percdiff 131.4757 tig 1476 read 353965 pos 8205-13337 NOT confused by 3' edge to read 607259 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 646 erate 0.0538 score 611.25 - absdiff 3459.51 percdiff 147.7792 tig 1476 read 353965 pos 8205-13337 IS confused by 3' edge to read 711397 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 4252 erate 0.0525 score 4028.77 - absdiff 41.99 percdiff 1.0368 saved region 7532:12808 - 2 best edges are potentially confused discard region 21631:22529 - no confusion in best edges break tig 1476 into up to 3 pieces: 0 7032 unique (length 7032) 7032 13308 repeat (length 6276) 13308 29771 unique (length 16463) Creating Unitig 113433 Creating Unitig 113434 Creating Unitig 113435 For tig 1476 unique region 0 7032 - 0/ 4 reads repeat/unique - unitig 113433 created. For tig 1476 repeat region 7032 13308 - 21/ 0 reads repeat/unique - unitig 113435 created. For tig 1476 unique region 13308 29771 - 0/ 26 reads repeat/unique - unitig 113434 created. Annotating repeats in reads for tig 1478/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:983 - contained in read 658816 0- 1639 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1480/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 10874:15057 - contained in read 364497 8665- 17796 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1481/113047. Annotated with 747 overlaps. Scan reads to discard spanned repeats. discard region 0:6415 - contained in read 537046 0- 8063 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1482/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:2319 - contained in read 31807 0- 5938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1487/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 6124:9180 - contained in read 37651 0- 12043 thickest edges to the repeat regions: saved region 24057:26206 - closest read 65724 ( +1068) 22989:26423 ( +217) (contained) saved region 24057:26206 - closest 5' read 65724 ( +1068) 22989:26423 ( +217) saved region 24057:26206 - closest 3' read 65724 ( +1068) 22989:26423 ( +217) search for confused edges: discard region 24057:26206 - no confusion in best edges Annotating repeats in reads for tig 1489/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13988:14547 - contained in read 242486 13288- 23073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1490/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:2784 - contained in read 383125 0- 6431 discard region 4746:3554 - contained in read 383125 0- 6431 discard region 5759:6431 - contained in read 264832 629- 8861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1491/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 16210:19634 - contained in read 432973 8271- 20572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1495/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 592:2143 - closest read 646020 ( +592) 0:2143 ( +0) (contained) saved region 592:2143 - closest read 365130 ( +15) 577:2143 ( +0) (contained) saved region 592:2143 - closest read 368242 ( +12) 580:10446 ( +8303) (contained) saved region 592:2143 - closest 5' read 368242 ( +12) 580:10446 ( +8303) saved region 592:2143 - closest 3' read 646020 ( +592) 0:2143 ( +0) search for confused edges: discard region 592:2143 - no confusion in best edges Annotating repeats in reads for tig 1497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1505/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 17722:18903 - contained in read 441945 11328- 22623 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1507/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6890:7576 - contained in read 422712 2602- 8947 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1508/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6121:7250 - closest 5' read 595510 ( +6121) 0:7225 ( -25) saved region 6121:7250 - closest 3' read 119818 ( -489) 6610:10797 ( +3547) search for confused edges: discard region 6121:7250 - no confusion in best edges Annotating repeats in reads for tig 1510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1522/113047. Annotated with 809 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6149:11488 - closest 5' read 174022 ( +2217) 3932:11318 ( -170) saved region 6149:11488 - closest 3' read 313456 ( -458) 6607:13671 ( +2183) saved region 13092:18204 - closest read 642891 ( +0) 13092:20764 ( +2560) (contained) saved region 13092:18204 - closest 5' read 642891 ( +0) 13092:20764 ( +2560) saved region 13092:18204 - closest 3' read 642891 ( +0) 13092:20764 ( +2560) search for confused edges: tig 1522 read 174025 pos 3974-11298 IS confused by 3' edge to read 40951 - best edge read 313455 len 4639 erate 0.0660 score 4332.83 - alt edge len 4349 erate 0.0593 score 4091.10 - absdiff 241.72 percdiff 5.7389 tig 1522 read 174025 pos 3974-11298 IS confused by 3' edge to read 284289 - best edge read 313455 len 4639 erate 0.0660 score 4332.83 - alt edge len 4416 erate 0.0628 score 4138.68 - absdiff 194.15 percdiff 4.5836 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 29357 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2042 erate 0.0654 score 1908.45 - absdiff 2377.67 percdiff 76.7662 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 29358 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2040 erate 0.0579 score 1921.88 - absdiff 2364.24 percdiff 76.1675 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 127603 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 3015 erate 0.0322 score 2917.92 - absdiff 1368.21 percdiff 37.9845 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 145079 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2202 erate 0.0568 score 2076.93 - absdiff 2209.20 percdiff 69.4384 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 175693 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4257 erate 0.0430 score 4073.95 - absdiff 212.18 percdiff 5.0760 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 242202 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 926 erate 0.0562 score 873.96 - absdiff 3412.17 percdiff 132.2524 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 253424 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 611 erate 0.0462 score 582.77 - absdiff 3703.35 percdiff 152.1229 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 280576 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 3769 erate 0.0378 score 3626.53 - absdiff 659.59 percdiff 16.6719 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 335604 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2395 erate 0.0401 score 2298.96 - absdiff 1987.17 percdiff 60.3535 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 335606 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2401 erate 0.0329 score 2322.01 - absdiff 1964.12 percdiff 59.4455 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 338205 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4275 erate 0.0370 score 4116.82 - absdiff 169.30 percdiff 4.0296 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 340263 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4289 erate 0.0156 score 4222.09 - absdiff 64.03 percdiff 1.5052 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 393610 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 931 erate 0.0516 score 882.96 - absdiff 3403.17 percdiff 131.6738 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 448733 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4293 erate 0.0273 score 4175.80 - absdiff 110.32 percdiff 2.6076 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498322 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4292 erate 0.0165 score 4221.18 - absdiff 64.94 percdiff 1.5268 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498323 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4367 erate 0.0284 score 4242.98 - absdiff 43.15 percdiff 1.0118 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498472 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4290 erate 0.0242 score 4186.18 - absdiff 99.94 percdiff 2.3593 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498473 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4307 erate 0.0269 score 4191.14 - absdiff 94.98 percdiff 2.2409 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 509401 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2758 erate 0.0344 score 2663.12 - absdiff 1623.00 percdiff 46.7101 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 556271 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 511 erate 0.0587 score 481.00 - absdiff 3805.12 percdiff 159.6399 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 689184 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 1664 erate 0.0270 score 1619.07 - absdiff 2667.05 percdiff 90.3290 saved region 6149:11488 - 15 best edges are potentially confused discard region 13092:18204 - no confusion in best edges break tig 1522 into up to 3 pieces: 0 5649 unique (length 5649) 5649 11988 repeat (length 6339) 11988 20764 unique (length 8776) Creating Unitig 113436 Creating Unitig 113437 Creating Unitig 113438 For tig 1522 unique region 0 5649 - 0/ 22 reads repeat/unique - unitig 113436 created. For tig 1522 repeat region 5649 11988 - 4/ 0 reads repeat/unique - unitig 113438 created. For tig 1522 unique region 11988 20764 - 0/ 42 reads repeat/unique - unitig 113437 created. Annotating repeats in reads for tig 1523/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9978:12498 - contained in read 481453 4360- 13014 discard region 15242:16249 - contained in read 109282 10599- 16249 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1525/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6448:6998 - contained in read 556624 0- 7904 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1527/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3645:8244 - contained in read 172844 2088- 10359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1534/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1540/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11623:14430 - closest read 633701 ( +5272) 6351:14733 ( +303) (contained) saved region 11623:14430 - closest read 633697 ( +5247) 6376:14767 ( +337) (contained) saved region 11623:14430 - closest read 633700 ( +5238) 6385:14753 ( +323) (contained) saved region 11623:14430 - closest read 69326 ( +3242) 8381:14738 ( +308) (contained) saved region 11623:14430 - closest read 69328 ( +3069) 8554:14544 ( +114) (contained) saved region 11623:14430 - closest read 69327 ( +132) 11491:14746 ( +316) (contained) saved region 11623:14430 - closest read 633703 ( +0) 11623:16376 ( +1946) (contained) saved region 11623:14430 - closest 5' read 633703 ( +0) 11623:16376 ( +1946) saved region 11623:14430 - closest 3' read 633701 ( +5272) 6351:14733 ( +303) saved region 15660:20210 - closest 5' read 28891 ( +906) 14754:20160 ( -50) saved region 15660:20210 - closest 3' read 654252 ( -116) 15776:25926 ( +5716) search for confused edges: discard region 11623:14430 - no confusion in best edges discard region 15660:20210 - no confusion in best edges Annotating repeats in reads for tig 1541/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6679:7980 - contained in read 478807 4975- 13215 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1544/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 9003:16784 - contained in read 18606 7740- 16784 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1549/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1550/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 17203:18963 - contained in read 172847 8203- 20447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1551/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 19453:18446 - contained in read 326304 14870- 21821 thickest edges to the repeat regions: saved region 13801:16168 - closest 5' read 562853 ( +6865) 6936:15493 ( -675) saved region 13801:16168 - closest 3' read 376810 ( -39) 13840:18563 ( +2395) search for confused edges: discard region 13801:16168 - no confusion in best edges Annotating repeats in reads for tig 1554/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 2029:3015 - contained in read 135232 0- 3866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1561/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1565/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5386:9570 - closest 5' read 569997 ( +5386) 0:9566 ( -4) saved region 5386:9570 - closest 3' read 519163 ( -2939) 8325:14489 ( +4919) search for confused edges: discard region 5386:9570 - no confusion in best edges Annotating repeats in reads for tig 1568/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 10131:11352 - contained in read 139731 4511- 12706 discard region 15259:16657 - contained in read 411871 13813- 16657 thickest edges to the repeat regions: saved region 2095:6153 - closest read 655546 ( +352) 1743:6153 ( +0) (contained) saved region 2095:6153 - closest 5' read 655546 ( +352) 1743:6153 ( +0) saved region 2095:6153 - closest 3' read 655546 ( +352) 1743:6153 ( +0) search for confused edges: tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 286848 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 538 erate 0.0642 score 503.46 - absdiff 834.88 percdiff 90.6590 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 499850 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 1036 erate 0.0613 score 972.49 - absdiff 365.85 percdiff 31.6635 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 499851 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 963 erate 0.0732 score 892.51 - absdiff 445.83 percdiff 39.9696 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 550907 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 1383 erate 0.0528 score 1309.98 - absdiff 28.36 percdiff 2.1418 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 605327 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 688 erate 0.0465 score 656.01 - absdiff 682.33 percdiff 68.4265 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 716638 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 1132 erate 0.0645 score 1058.99 - absdiff 279.35 percdiff 23.3053 saved region 2095:6153 - 6 best edges are potentially confused break tig 1568 into up to 3 pieces: 0 1595 unique (length 1595) 1595 6653 repeat (length 5058) 6653 16657 unique (length 10004) Creating Unitig 113439 Creating Unitig 113440 Creating Unitig 113441 For tig 1568 unique region 0 1595 - 0/ 2 reads repeat/unique - unitig 113439 created. For tig 1568 repeat region 1595 6653 - 19/ 0 reads repeat/unique - unitig 113440 created. For tig 1568 unique region 6653 16657 - 0/ 9 reads repeat/unique - unitig 113441 created. Annotating repeats in reads for tig 1572/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 0:824 - contained in read 627900 0- 5862 discard region 5211:5792 - contained in read 305816 8- 6305 discard region 8058:10574 - contained in read 304903 2880- 11232 thickest edges to the repeat regions: saved region 18411:22469 - closest read 52038 ( +1142) 17269:22581 ( +112) (contained) saved region 18411:22469 - closest read 485629 ( +1019) 17392:22469 ( +0) (contained) saved region 18411:22469 - closest 5' read 52038 ( +1142) 17269:22581 ( +112) saved region 18411:22469 - closest 3' read 52038 ( +1142) 17269:22581 ( +112) search for confused edges: discard region 18411:22469 - no confusion in best edges Annotating repeats in reads for tig 1573/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 34249:40196 - contained in read 267649 31896- 42728 thickest edges to the repeat regions: saved region 12640:29950 - closest 5' read 379867 ( +0) 12640:23839 ( -6111) saved region 12640:29950 - closest 3' read 555639 ( -5128) 17768:32000 ( +2050) saved region 42011:43047 - closest read 47963 ( +4431) 37580:43047 ( +0) (contained) saved region 42011:43047 - closest 5' read 47963 ( +4431) 37580:43047 ( +0) saved region 42011:43047 - closest 3' read 47963 ( +4431) 37580:43047 ( +0) search for confused edges: tig 1573 read 555639 pos 17768-32000 NOT confused by 3' edge to read 564662 - best edge read 173914 len 8689 erate 0.0516 score 8240.65 - alt edge len 2663 erate 0.0218 score 2604.95 - absdiff 5635.70 percdiff 103.9261 discard region 12640:29950 - no confusion in best edges discard region 42011:43047 - no confusion in best edges Annotating repeats in reads for tig 1578/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 11730:12363 - contained in read 227211 3336- 13083 discard region 14738:16765 - contained in read 239805 12790- 20342 discard region 26612:31070 - contained in read 444712 22986- 32595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1581/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3293:1293 - contained in read 492441 0- 6245 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1590/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7838:11299 - contained in read 106944 854- 11299 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1591/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 0:6065 - contained in read 102630 0- 9656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1597/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. discard region 19743:20623 - contained in read 663186 14301- 22096 discard region 26332:29612 - contained in read 366155 25748- 33288 thickest edges to the repeat regions: saved region 6145:9815 - closest read 201356 ( +0) 6145:12847 ( +3032) (contained) saved region 6145:9815 - closest 5' read 201356 ( +0) 6145:12847 ( +3032) saved region 6145:9815 - closest 3' read 201356 ( +0) 6145:12847 ( +3032) saved region 13320:14552 - closest read 130727 ( +0) 13320:20007 ( +5455) (contained) saved region 13320:14552 - closest 5' read 130727 ( +0) 13320:20007 ( +5455) saved region 13320:14552 - closest 3' read 130727 ( +0) 13320:20007 ( +5455) saved region 32949:34737 - closest read 298187 ( +1822) 31127:34737 ( +0) (contained) saved region 32949:34737 - closest read 57140 ( +308) 32641:39138 ( +4401) (contained) saved region 32949:34737 - closest read 57136 ( +306) 32643:39125 ( +4388) (contained) saved region 32949:34737 - closest read 57138 ( +306) 32643:38807 ( +4070) (contained) saved region 32949:34737 - closest read 57139 ( +299) 32650:38911 ( +4174) (contained) saved region 32949:34737 - closest read 57137 ( +294) 32655:39101 ( +4364) (contained) saved region 32949:34737 - closest 5' read 57140 ( +308) 32641:39138 ( +4401) saved region 32949:34737 - closest 3' read 298187 ( +1822) 31127:34737 ( +0) search for confused edges: tig 1597 read 211420 pos 1640-8489 IS confused by 5' edge to read 110609 - best edge read 201356 len 2292 erate 0.0523 score 2172.13 - alt edge len 2176 erate 0.0396 score 2089.83 - absdiff 82.30 percdiff 3.8620 saved region 6145:9815 - 1 best edges are potentially confused discard region 13320:14552 - no confusion in best edges discard region 32949:34737 - no confusion in best edges break tig 1597 into up to 3 pieces: 0 5645 unique (length 5645) 5645 10315 repeat (length 4670) 10315 39138 unique (length 28823) Creating Unitig 113442 Creating Unitig 113443 Creating Unitig 113444 For tig 1597 unique region 0 5645 - 0/ 6 reads repeat/unique - unitig 113442 created. For tig 1597 repeat region 5645 10315 - 7/ 0 reads repeat/unique - unitig 113444 created. For tig 1597 unique region 10315 39138 - 0/ 26 reads repeat/unique - unitig 113443 created. Annotating repeats in reads for tig 1599/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 29844:30641 - contained in read 618936 19625- 31193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1600/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1601/113047. Annotated with 391 overlaps. Scan reads to discard spanned repeats. discard region 6792:8102 - contained in read 237075 2631- 13449 thickest edges to the repeat regions: saved region 12592:20985 - closest 5' read 424143 ( +9) 12583:20966 ( -19) saved region 12592:20985 - closest 3' read 494072 ( -4001) 16593:20985 ( +0) search for confused edges: discard region 12592:20985 - no confusion in best edges Annotating repeats in reads for tig 1602/113047. Annotated with 2179 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 368:11471 - closest 5' read 260751 ( +368) 0:8867 ( -2604) saved region 368:11471 - closest 3' read 404935 ( -4094) 4462:11471 ( +0) search for confused edges: tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 238313 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 6032 erate 0.0630 score 5651.98 - absdiff 934.09 percdiff 15.2654 tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 259113 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 6542 erate 0.0628 score 6131.16 - absdiff 454.92 percdiff 7.1543 tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 637543 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 5432 erate 0.0694 score 5055.02 - absdiff 1531.06 percdiff 26.3044 tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 643871 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 6489 erate 0.0716 score 6024.39 - absdiff 561.69 percdiff 8.9083 tig 1602 read 260751 pos 0-8867 NOT confused by 5' edge to read 671333 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 4319 erate 0.0458 score 4121.19 - absdiff 2464.89 percdiff 46.0414 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 56472 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 2203 erate 0.0558 score 2080.07 - absdiff 4447.86 percdiff 103.3424 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 69514 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 3410 erate 0.0430 score 3263.37 - absdiff 3264.56 percdiff 66.6829 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 86124 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 3896 erate 0.0683 score 3629.90 - absdiff 2898.03 percdiff 57.0600 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 532060 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 4381 erate 0.0636 score 4102.37 - absdiff 2425.56 percdiff 45.6349 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 545260 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 2863 erate 0.0457 score 2732.16 - absdiff 3795.77 percdiff 81.9813 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 545264 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 2843 erate 0.0469 score 2709.66 - absdiff 3818.27 percdiff 82.6680 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 697592 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 4426 erate 0.0702 score 4115.29 - absdiff 2412.64 percdiff 45.3366 tig 1602 read 212668 pos 2727-11147 NOT confused by 5' edge to read 114215 - best edge read 73835 len 5768 erate 0.0526 score 5464.60 - alt edge len 2992 erate 0.0560 score 2824.45 - absdiff 2640.16 percdiff 63.7022 tig 1602 read 212668 pos 2727-11147 NOT confused by 5' edge to read 114216 - best edge read 73835 len 5768 erate 0.0526 score 5464.60 - alt edge len 3022 erate 0.0594 score 2842.49 - absdiff 2622.11 percdiff 63.1294 saved region 368:11471 - 4 best edges are potentially confused Annotating repeats in reads for tig 1603/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6739:7745 - closest 5' read 114673 ( +6739) 0:7579 ( -166) saved region 6739:7745 - closest 3' read 533440 ( -145) 6884:14045 ( +6300) search for confused edges: discard region 6739:7745 - no confusion in best edges Annotating repeats in reads for tig 1604/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3229:8163 - closest 5' read 482479 ( +2531) 698:7756 ( -407) saved region 3229:8163 - closest 3' read 655880 ( -155) 3384:11226 ( +3063) search for confused edges: tig 1604 read 678126 pos 3412-11339 IS confused by 5' edge to read 451579 - best edge read 482479 len 4305 erate 0.0545 score 4070.38 - alt edge len 2807 erate 0.0590 score 2641.39 - absdiff 1428.99 percdiff 42.5817 tig 1604 read 678126 pos 3412-11339 IS confused by 5' edge to read 653230 - best edge read 482479 len 4305 erate 0.0545 score 4070.38 - alt edge len 3192 erate 0.0544 score 3018.36 - absdiff 1052.02 percdiff 29.6815 saved region 3229:8163 - 2 best edges are potentially confused break tig 1604 into up to 3 pieces: 0 2729 unique (length 2729) 2729 8663 repeat (length 5934) 8663 22505 unique (length 13842) Creating Unitig 113445 Creating Unitig 113446 Creating Unitig 113447 For tig 1604 unique region 0 2729 - 0/ 9 reads repeat/unique - unitig 113445 created. For tig 1604 repeat region 2729 8663 - 21/ 0 reads repeat/unique - unitig 113446 created. For tig 1604 unique region 8663 22505 - 0/ 23 reads repeat/unique - unitig 113447 created. Annotating repeats in reads for tig 1608/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 8074:8586 - contained in read 491849 2221- 9611 discard region 21988:23081 - contained in read 575127 12533- 24709 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1610/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 16017:14885 - contained in read 410956 9647- 15667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1612/113047. Annotated with 142 overlaps. Scan reads to discard spanned repeats. discard region 7195:8137 - contained in read 226181 3- 8996 discard region 8338:9198 - contained in read 340881 5920- 10953 discard region 13085:15426 - contained in read 467982 9303- 18132 thickest edges to the repeat regions: saved region 9372:12797 - closest read 467982 ( +69) 9303:18132 ( +5335) (contained) saved region 9372:12797 - closest read 467980 ( +68) 9304:18140 ( +5343) (contained) saved region 9372:12797 - closest read 467983 ( +61) 9311:18135 ( +5338) (contained) saved region 9372:12797 - closest read 467979 ( +0) 9372:17117 ( +4320) (contained) saved region 9372:12797 - closest 5' read 467980 ( +68) 9304:18140 ( +5343) saved region 9372:12797 - closest 3' read 467982 ( +69) 9303:18132 ( +5335) search for confused edges: discard region 9372:12797 - no confusion in best edges Annotating repeats in reads for tig 1614/113047. Annotated with 80 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5077:18276 - closest 5' read 489919 ( +0) 5077:12811 ( -5465) saved region 5077:18276 - closest 3' read 41419 ( -4233) 9310:18276 ( +0) search for confused edges: tig 1614 read 544251 pos 2515-11884 IS confused by 5' edge to read 548005 - best edge read 218860 len 4165 erate 0.0212 score 4076.70 - alt edge len 2671 erate 0.0151 score 2630.67 - absdiff 1446.03 percdiff 43.1178 saved region 5077:18276 - 1 best edges are potentially confused break tig 1614 into up to 2 pieces: 0 4577 unique (length 4577) 4577 18276 repeat (length 13699) Creating Unitig 113448 Creating Unitig 113449 For tig 1614 unique region 0 4577 - 0/ 9 reads repeat/unique - unitig 113448 created. For tig 1614 repeat region 4577 18276 - 17/ 0 reads repeat/unique - unitig 113449 created. Annotating repeats in reads for tig 1616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1626/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13818:13111 - contained in read 684787 3085- 14880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1631/113047. Annotated with 771 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3237:23047 - closest 5' read 623873 ( +3237) 0:17654 ( -5393) saved region 3237:23047 - closest 3' read 660504 ( -7922) 11159:24166 ( +1119) search for confused edges: tig 1631 read 623872 pos 3450-21365 NOT confused by 5' edge to read 657935 - best edge read 158241 len 9283 erate 0.0246 score 9054.64 - alt edge len 3298 erate 0.0246 score 3216.87 - absdiff 5837.77 percdiff 95.1435 tig 1631 read 623872 pos 3450-21365 NOT confused by 5' edge to read 657938 - best edge read 158241 len 9283 erate 0.0246 score 9054.64 - alt edge len 3293 erate 0.0216 score 3221.87 - absdiff 5832.77 percdiff 95.0232 tig 1631 read 158241 pos 4171-17118 NOT confused by 5' edge to read 52880 - best edge read 22465 len 9287 erate 0.0255 score 9050.18 - alt edge len 603 erate 0.0367 score 580.87 - absdiff 8469.31 percdiff 175.8751 tig 1631 read 158241 pos 4171-17118 NOT confused by 5' edge to read 657935 - best edge read 22465 len 9287 erate 0.0255 score 9050.18 - alt edge len 4136 erate 0.0260 score 4028.46 - absdiff 5021.72 percdiff 76.7926 tig 1631 read 158241 pos 4171-17118 NOT confused by 5' edge to read 657938 - best edge read 22465 len 9287 erate 0.0255 score 9050.18 - alt edge len 4131 erate 0.0233 score 4034.75 - absdiff 5015.43 percdiff 76.6597 tig 1631 read 22465 pos 5272-20105 NOT confused by 5' edge to read 657935 - best edge read 623872 len 8916 erate 0.0158 score 8775.13 - alt edge len 2433 erate 0.0235 score 2375.82 - absdiff 6399.30 percdiff 114.7759 tig 1631 read 22465 pos 5272-20105 NOT confused by 5' edge to read 657938 - best edge read 623872 len 8916 erate 0.0158 score 8775.13 - alt edge len 2428 erate 0.0223 score 2373.86 - absdiff 6401.27 percdiff 114.8315 tig 1631 read 259871 pos 8460-16960 NOT confused by 5' edge to read 657935 - best edge read 503608 len 7520 erate 0.0233 score 7344.78 - alt edge len 2412 erate 0.0182 score 2368.10 - absdiff 4976.68 percdiff 102.4759 tig 1631 read 259871 pos 8460-16960 NOT confused by 5' edge to read 657938 - best edge read 503608 len 7520 erate 0.0233 score 7344.78 - alt edge len 2407 erate 0.0179 score 2363.91 - absdiff 4980.87 percdiff 102.6063 tig 1631 read 503608 pos 10513-19870 IS confused by 5' edge to read 657935 - best edge read 623872 len 1354 erate 0.0229 score 1322.99 - alt edge len 593 erate 0.0371 score 571.00 - absdiff 751.99 percdiff 79.4083 tig 1631 read 503608 pos 10513-19870 IS confused by 5' edge to read 657938 - best edge read 623872 len 1354 erate 0.0229 score 1322.99 - alt edge len 588 erate 0.0426 score 562.95 - absdiff 760.04 percdiff 80.6007 tig 1631 read 259869 pos 10760-19494 NOT confused by 3' edge to read 85363 - best edge read 684273 len 5138 erate 0.0466 score 4898.57 - alt edge len 616 erate 0.0747 score 569.98 - absdiff 4328.58 percdiff 158.3082 tig 1631 read 259869 pos 10760-19494 NOT confused by 5' edge to read 657935 - best edge read 259871 len 8285 erate 0.0114 score 8190.55 - alt edge len 2359 erate 0.0208 score 2309.93 - absdiff 5880.62 percdiff 112.0066 tig 1631 read 259869 pos 10760-19494 NOT confused by 5' edge to read 657938 - best edge read 259871 len 8285 erate 0.0114 score 8190.55 - alt edge len 2354 erate 0.0191 score 2309.04 - absdiff 5881.51 percdiff 112.0332 tig 1631 read 684273 pos 12758-22953 NOT confused by 5' edge to read 657935 - best edge read 22465 len 6279 erate 0.0246 score 6124.54 - alt edge len 3755 erate 0.0174 score 3689.66 - absdiff 2434.87 percdiff 49.6194 tig 1631 read 684273 pos 12758-22953 NOT confused by 5' edge to read 657938 - best edge read 22465 len 6279 erate 0.0246 score 6124.54 - alt edge len 3750 erate 0.0158 score 3690.75 - absdiff 2433.79 percdiff 49.5918 tig 1631 read 684274 pos 12884-22101 NOT confused by 3' edge to read 52880 - best edge read 684273 len 9063 erate 0.0140 score 8936.12 - alt edge len 534 erate 0.0546 score 504.84 - absdiff 8431.27 percdiff 178.6105 tig 1631 read 684274 pos 12884-22101 NOT confused by 3' edge to read 657935 - best edge read 684273 len 9063 erate 0.0140 score 8936.12 - alt edge len 4060 erate 0.0247 score 3959.72 - absdiff 4976.40 percdiff 77.1784 tig 1631 read 684274 pos 12884-22101 NOT confused by 3' edge to read 657938 - best edge read 684273 len 9063 erate 0.0140 score 8936.12 - alt edge len 4055 erate 0.0232 score 3960.92 - absdiff 4975.19 percdiff 77.1525 tig 1631 read 684272 pos 14429-21974 NOT confused by 3' edge to read 657935 - best edge read 684274 len 7457 erate 0.0194 score 7312.33 - alt edge len 2413 erate 0.0241 score 2354.85 - absdiff 4957.49 percdiff 102.5633 tig 1631 read 684272 pos 14429-21974 NOT confused by 3' edge to read 657938 - best edge read 684274 len 7457 erate 0.0194 score 7312.33 - alt edge len 3726 erate 0.0220 score 3644.03 - absdiff 3668.31 percdiff 66.9621 saved region 3237:23047 - 2 best edges are potentially confused break tig 1631 into up to 3 pieces: 0 2737 unique (length 2737) 2737 23547 repeat (length 20810) 23547 28244 unique (length 4697) Creating Unitig 113450 Creating Unitig 113451 Creating Unitig 113452 For tig 1631 unique region 0 2737 - 0/ 1 reads repeat/unique - unitig 113450 created. For tig 1631 repeat region 2737 23547 - 157/ 0 reads repeat/unique - unitig 113451 created. For tig 1631 unique region 23547 28244 - 0/ 10 reads repeat/unique - unitig 113452 created. Annotating repeats in reads for tig 1633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1636/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 5917:5106 - contained in read 268335 0- 7019 discard region 6486:9710 - contained in read 626810 5106- 10558 discard region 19460:20744 - contained in read 379058 16242- 20744 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1638/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 15296:16609 - contained in read 71776 6175- 17178 discard region 18485:19113 - contained in read 191444 15517- 22148 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1641/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1642/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7147:9384 - closest read 40028 ( +358) 6789:13610 ( +4226) (contained) saved region 7147:9384 - closest read 420410 ( +287) 6860:9384 ( +0) (contained) saved region 7147:9384 - closest 5' read 40028 ( +358) 6789:13610 ( +4226) saved region 7147:9384 - closest 3' read 40028 ( +358) 6789:13610 ( +4226) search for confused edges: discard region 7147:9384 - no confusion in best edges Annotating repeats in reads for tig 1644/113047. Annotated with 488 overlaps. Scan reads to discard spanned repeats. discard region 12211:12787 - contained in read 171099 1148- 14935 thickest edges to the repeat regions: saved region 24710:40291 - closest 5' read 450153 ( +3477) 21233:26319 (-13972) saved region 24710:40291 - closest 3' read 498458 ( -7818) 32528:41133 ( +842) search for confused edges: discard region 24710:40291 - no confusion in best edges Annotating repeats in reads for tig 1645/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 1756:5973 - contained in read 705265 0- 9221 discard region 7338:14602 - contained in read 481989 5940- 14602 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1646/113047. Annotated with 174 overlaps. Scan reads to discard spanned repeats. discard region 4093:6853 - contained in read 268940 3067- 10737 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1649/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1397:2196 - contained in read 51650 0- 3862 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1650/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 17767:18425 - contained in read 70893 16579- 21382 thickest edges to the repeat regions: saved region 7461:9298 - closest read 290441 ( +7452) 9:9298 ( +0) (contained) saved region 7461:9298 - closest 5' read 290441 ( +7452) 9:9298 ( +0) saved region 7461:9298 - closest 3' read 290441 ( +7452) 9:9298 ( +0) saved region 24471:28609 - closest 5' read 288521 ( +3727) 20744:28419 ( -190) saved region 24471:28609 - closest 3' read 317548 ( -10) 24481:30425 ( +1816) search for confused edges: tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 37287 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3875 erate 0.0617 score 3635.91 - absdiff 65.93 percdiff 1.7970 tig 1650 read 288521 pos 20744-28419 NOT confused by 3' edge to read 218398 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 1571 erate 0.0562 score 1482.71 - absdiff 2219.13 percdiff 85.6055 tig 1650 read 288521 pos 20744-28419 NOT confused by 3' edge to read 220644 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 684 erate 0.0587 score 643.85 - absdiff 3057.99 percdiff 140.7368 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 242523 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3208 erate 0.0377 score 3087.06 - absdiff 614.78 percdiff 18.1114 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 247814 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3954 erate 0.0670 score 3689.08 - absdiff 12.76 percdiff 0.3452 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 283184 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3882 erate 0.0268 score 3777.96 - absdiff 76.12 percdiff 2.0354 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 441171 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3077 erate 0.0575 score 2900.07 - absdiff 801.77 percdiff 24.2890 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 559828 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 2682 erate 0.0635 score 2511.69 - absdiff 1190.15 percdiff 38.3082 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 576530 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 1830 erate 0.0635 score 1713.80 - absdiff 1988.05 percdiff 73.4187 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 625687 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 1981 erate 0.0475 score 1886.90 - absdiff 1814.94 percdiff 64.9498 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 656839 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 2652 erate 0.0540 score 2508.79 - absdiff 1193.05 percdiff 38.4195 discard region 7461:9298 - no confusion in best edges saved region 24471:28609 - 9 best edges are potentially confused break tig 1650 into up to 3 pieces: 0 23971 unique (length 23971) 23971 29109 repeat (length 5138) 29109 34650 unique (length 5541) Creating Unitig 113453 Creating Unitig 113454 Creating Unitig 113455 For tig 1650 unique region 0 23971 - 0/ 26 reads repeat/unique - unitig 113453 created. For tig 1650 repeat region 23971 29109 - 22/ 0 reads repeat/unique - unitig 113454 created. For tig 1650 unique region 29109 34650 - 0/ 2 reads repeat/unique - unitig 113455 created. Annotating repeats in reads for tig 1652/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1658/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:6851 - contained in read 35674 0- 7837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1660/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 6001:8970 - contained in read 576014 5205- 8970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1663/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 30939:32471 - contained in read 14344 23644- 37426 thickest edges to the repeat regions: saved region 15291:15873 - closest read 618176 ( +22) 15269:24598 ( +8725) (contained) saved region 15291:15873 - closest read 618175 ( +17) 15274:24600 ( +8727) (contained) saved region 15291:15873 - closest read 618177 ( +6) 15285:24605 ( +8732) (contained) saved region 15291:15873 - closest read 618178 ( +6) 15285:22996 ( +7123) (contained) saved region 15291:15873 - closest read 618174 ( +0) 15291:24605 ( +8732) (contained) saved region 15291:15873 - closest 5' read 618177 ( +6) 15285:24605 ( +8732) saved region 15291:15873 - closest 3' read 618176 ( +22) 15269:24598 ( +8725) search for confused edges: discard region 15291:15873 - no confusion in best edges Annotating repeats in reads for tig 1665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1666/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1668/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2:8555 - closest 5' read 329054 ( +2) 0:8248 ( -307) saved region 2:8555 - closest 3' read 104210 ( -3609) 3611:8890 ( +335) search for confused edges: discard region 2:8555 - no confusion in best edges Annotating repeats in reads for tig 1671/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 3863:12070 - contained in read 588140 3089- 12070 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1682/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17061:16395 - contained in read 525546 14410- 17012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1684/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 2909:8909 - contained in read 512094 0- 13788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1687/113047. Annotated with 183 overlaps. Scan reads to discard spanned repeats. discard region 14981:13854 - contained in read 388723 6308- 14690 discard region 15622:18124 - contained in read 31283 13743- 19698 thickest edges to the repeat regions: saved region 2257:13642 - closest 5' read 179582 ( +2048) 209:11568 ( -2074) saved region 2257:13642 - closest 3' read 716820 ( -3986) 6243:13642 ( +0) saved region 23447:26457 - closest 5' read 647749 ( +6529) 16918:25790 ( -667) saved region 23447:26457 - closest 3' read 629003 ( -102) 23549:28086 ( +1629) search for confused edges: tig 1687 read 11939 pos 8064-14612 IS confused by 5' edge to read 158199 - best edge read 179582 len 3417 erate 0.0366 score 3291.94 - alt edge len 3266 erate 0.0585 score 3074.94 - absdiff 217.00 percdiff 6.8165 saved region 2257:13642 - 1 best edges are potentially confused discard region 23447:26457 - no confusion in best edges break tig 1687 into up to 3 pieces: 0 1757 unique (length 1757) 1757 14142 repeat (length 12385) 14142 30978 unique (length 16836) Creating Unitig 113456 Creating Unitig 113457 Creating Unitig 113458 For tig 1687 unique region 0 1757 - 0/ 4 reads repeat/unique - unitig 113456 created. For tig 1687 repeat region 1757 14142 - 25/ 0 reads repeat/unique - unitig 113457 created. For tig 1687 unique region 14142 30978 - 0/ 32 reads repeat/unique - unitig 113458 created. Annotating repeats in reads for tig 1688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1689/113047. Annotated with 1250 overlaps. Scan reads to discard spanned repeats. discard region 7217:7798 - contained in read 307323 5578- 11814 thickest edges to the repeat regions: saved region 11815:19571 - closest 5' read 207546 ( +0) 11815:17343 ( -2228) saved region 11815:19571 - closest 3' read 214721 ( -48) 11863:19571 ( +0) search for confused edges: tig 1689 read 115379 pos 5648-12731 IS confused by 5' edge to read 581053 - best edge read 214721 len 867 erate 0.0544 score 819.84 - alt edge len 867 erate 0.0559 score 818.53 - absdiff 1.30 percdiff 0.1588 saved region 11815:19571 - 1 best edges are potentially confused break tig 1689 into up to 2 pieces: 0 11315 unique (length 11315) 11315 19571 repeat (length 8256) Creating Unitig 113459 Creating Unitig 113460 For tig 1689 unique region 0 11315 - 0/ 9 reads repeat/unique - unitig 113459 created. For tig 1689 repeat region 11315 19571 - 115/ 0 reads repeat/unique - unitig 113460 created. Annotating repeats in reads for tig 1691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1694/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:2720 - contained in read 246199 0- 5095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1695/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1696/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 22178:24683 - contained in read 337264 17671- 25860 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1701/113047. Annotated with 282 overlaps. Scan reads to discard spanned repeats. discard region 6026:9155 - contained in read 710976 2416- 9731 discard region 12632:13738 - contained in read 569873 5650- 15826 thickest edges to the repeat regions: saved region 14078:24100 - closest 5' read 657869 ( +7084) 6994:23604 ( -496) saved region 14078:24100 - closest 3' read 561349 ( -2752) 16830:24191 ( +91) search for confused edges: tig 1701 read 657869 pos 6994-23604 NOT confused by 5' edge to read 645754 - best edge read 561350 len 6698 erate 0.0128 score 6612.27 - alt edge len 805 erate 0.0525 score 762.74 - absdiff 5849.53 percdiff 158.6312 tig 1701 read 281219 pos 17795-25375 IS confused by 3' edge to read 125834 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 3488 erate 0.0370 score 3358.94 - absdiff 2096.78 percdiff 47.5748 tig 1701 read 281219 pos 17795-25375 NOT confused by 3' edge to read 406245 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 2921 erate 0.0387 score 2807.96 - absdiff 2647.77 percdiff 64.0820 tig 1701 read 281219 pos 17795-25375 IS confused by 3' edge to read 522767 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 3630 erate 0.0342 score 3505.85 - absdiff 1949.87 percdiff 43.5162 tig 1701 read 281219 pos 17795-25375 IS confused by 3' edge to read 602326 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 5478 erate 0.0577 score 5161.92 - absdiff 293.80 percdiff 5.5343 tig 1701 read 281219 pos 17795-25375 NOT confused by 3' edge to read 618714 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 3220 erate 0.0391 score 3094.10 - absdiff 2361.62 percdiff 55.2438 saved region 14078:24100 - 3 best edges are potentially confused break tig 1701 into up to 3 pieces: 0 13578 unique (length 13578) 13578 24600 repeat (length 11022) 24600 26908 unique (length 2308) Creating Unitig 113461 Creating Unitig 113462 Creating Unitig 113463 For tig 1701 unique region 0 13578 - 0/ 70 reads repeat/unique - unitig 113461 created. For tig 1701 repeat region 13578 24600 - 65/ 0 reads repeat/unique - unitig 113462 created. For tig 1701 unique region 24600 26908 - 0/ 2 reads repeat/unique - unitig 113463 created. Annotating repeats in reads for tig 1705/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 29415:30774 - contained in read 662913 22874- 35141 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1710/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3996:2895 - contained in read 311089 0- 7720 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1713/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 18220:19221 - contained in read 321800 13481- 22441 discard region 21849:22441 - contained in read 668232 17277- 27727 thickest edges to the repeat regions: saved region 12768:18087 - closest 5' read 105676 ( +11) 12757:17240 ( -847) saved region 12768:18087 - closest 3' read 411614 ( -157) 12925:19221 ( +1134) search for confused edges: tig 1713 read 321800 pos 13481-22441 IS confused by 3' edge to read 295329 - best edge read 73817 len 3603 erate 0.0475 score 3431.86 - alt edge len 1511 erate 0.0582 score 1423.06 - absdiff 2008.80 percdiff 82.7531 saved region 12768:18087 - 1 best edges are potentially confused break tig 1713 into up to 3 pieces: 0 12268 unique (length 12268) 12268 18587 repeat (length 6319) 18587 33705 unique (length 15118) Creating Unitig 113464 Creating Unitig 113465 Creating Unitig 113466 For tig 1713 unique region 0 12268 - 0/ 14 reads repeat/unique - unitig 113464 created. For tig 1713 repeat region 12268 18587 - 6/ 0 reads repeat/unique - unitig 113465 created. For tig 1713 unique region 18587 33705 - 0/ 15 reads repeat/unique - unitig 113466 created. Annotating repeats in reads for tig 1717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1722/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1726/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:1549 - contained in read 464727 0- 2246 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1727/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13780:14882 - contained in read 232698 10507- 16444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1731/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11098:15203 - closest 5' read 561027 ( +1713) 9385:15201 ( -2) saved region 11098:15203 - closest 3' read 627863 ( -1594) 12692:19380 ( +4177) search for confused edges: tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 342509 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2355 erate 0.0646 score 2202.87 - absdiff 70.00 percdiff 3.1279 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 435177 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2449 erate 0.0732 score 2269.73 - absdiff 3.13 percdiff 0.1379 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 672927 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2307 erate 0.0616 score 2164.89 - absdiff 107.98 percdiff 4.8663 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 688756 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2345 erate 0.0632 score 2196.80 - absdiff 76.07 percdiff 3.4038 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 694629 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2144 erate 0.0505 score 2035.73 - absdiff 237.14 percdiff 11.0076 saved region 11098:15203 - 5 best edges are potentially confused break tig 1731 into up to 3 pieces: 0 10598 unique (length 10598) 10598 15703 repeat (length 5105) 15703 31938 unique (length 16235) Creating Unitig 113467 Creating Unitig 113468 Creating Unitig 113469 For tig 1731 unique region 0 10598 - 0/ 20 reads repeat/unique - unitig 113467 created. For tig 1731 repeat region 10598 15703 - 5/ 0 reads repeat/unique - unitig 113468 created. For tig 1731 unique region 15703 31938 - 0/ 22 reads repeat/unique - unitig 113469 created. Annotating repeats in reads for tig 1734/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 1155:4581 - contained in read 437051 0- 8642 discard region 8050:10871 - contained in read 68611 4040- 11634 thickest edges to the repeat regions: saved region 21428:24002 - closest read 673825 ( +3941) 17487:24002 ( +0) (contained) saved region 21428:24002 - closest read 93885 ( +8) 21420:28741 ( +4739) (contained) saved region 21428:24002 - closest 5' read 93885 ( +8) 21420:28741 ( +4739) saved region 21428:24002 - closest 3' read 673825 ( +3941) 17487:24002 ( +0) search for confused edges: discard region 21428:24002 - no confusion in best edges Annotating repeats in reads for tig 1738/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14806:17213 - closest 5' read 196999 ( +8391) 6415:17019 ( -194) saved region 14806:17213 - closest 3' read 580272 ( -12) 14818:21784 ( +4571) search for confused edges: tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 52880 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 939 erate 0.0586 score 883.97 - absdiff 1135.12 percdiff 78.2015 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 167502 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 539 erate 0.0482 score 513.02 - absdiff 1506.08 percdiff 118.9579 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 167504 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 532 erate 0.0547 score 502.90 - absdiff 1516.20 percdiff 120.2379 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 309443 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 666 erate 0.0435 score 637.03 - absdiff 1382.07 percdiff 104.0665 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 633324 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 795 erate 0.0733 score 736.73 - absdiff 1282.37 percdiff 93.0663 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 689567 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 1210 erate 0.0510 score 1148.29 - absdiff 870.81 percdiff 54.9859 saved region 14806:17213 - 6 best edges are potentially confused break tig 1738 into up to 3 pieces: 0 14306 unique (length 14306) 14306 17713 repeat (length 3407) 17713 24893 unique (length 7180) Creating Unitig 113470 Creating Unitig 113471 Creating Unitig 113472 For tig 1738 unique region 0 14306 - 0/ 14 reads repeat/unique - unitig 113470 created. For tig 1738 repeat region 14306 17713 - 19/ 0 reads repeat/unique - unitig 113472 created. For tig 1738 unique region 17713 24893 - 0/ 11 reads repeat/unique - unitig 113471 created. Annotating repeats in reads for tig 1740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1741/113047. Annotated with 156 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9253:14150 - closest read 444381 ( +400) 8853:19078 ( +4928) (contained) saved region 9253:14150 - closest read 444382 ( +361) 8892:19082 ( +4932) (contained) saved region 9253:14150 - closest read 547160 ( +301) 8952:14150 ( +0) (contained) saved region 9253:14150 - closest 5' read 444382 ( +361) 8892:19082 ( +4932) saved region 9253:14150 - closest 3' read 444381 ( +400) 8853:19078 ( +4928) saved region 18490:27497 - closest 5' read 444382 ( +9598) 8892:19082 ( -8415) saved region 18490:27497 - closest 3' read 155180 ( -1118) 19608:27572 ( +75) search for confused edges: tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 21075 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3056 erate 0.0566 score 2883.03 - absdiff 2994.61 percdiff 68.3649 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 21077 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3019 erate 0.0520 score 2862.01 - absdiff 3015.63 percdiff 69.0103 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 125715 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 971 erate 0.0510 score 921.48 - absdiff 4956.17 percdiff 145.7884 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 426783 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 914 erate 0.0564 score 862.45 - absdiff 5015.19 percdiff 148.8167 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 719224 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3183 erate 0.0324 score 3079.87 - absdiff 2797.77 percdiff 62.4676 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 719225 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3191 erate 0.0346 score 3080.59 - absdiff 2797.05 percdiff 62.4465 discard region 9253:14150 - no confusion in best edges discard region 18490:27497 - no confusion in best edges Annotating repeats in reads for tig 1742/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 11310:13341 - contained in read 372048 8254- 14475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1745/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4225:4897 - contained in read 602429 94- 6729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1747/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1754/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1757/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 12395:13752 - contained in read 128688 10985- 14885 discard region 16477:20386 - contained in read 344836 11857- 23519 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1777/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 322:951 - contained in read 514107 0- 2707 discard region 29033:34751 - contained in read 517853 27136- 35257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1785/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1008:5573 - contained in read 534912 0- 6225 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1800/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4383:5501 - closest 5' read 506953 ( +4383) 0:5336 ( -165) saved region 4383:5501 - closest 3' read 260365 ( -2) 4385:11068 ( +5567) search for confused edges: tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 140335 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 622 erate 0.0391 score 597.68 - absdiff 98.06 percdiff 15.1632 tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 192472 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 666 erate 0.0319 score 644.75 - absdiff 50.99 percdiff 7.6072 tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 192473 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 670 erate 0.0424 score 641.59 - absdiff 54.15 percdiff 8.0982 tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 192476 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 671 erate 0.0332 score 648.72 - absdiff 47.02 percdiff 6.9945 saved region 4383:5501 - 4 best edges are potentially confused break tig 1800 into up to 3 pieces: 0 3883 unique (length 3883) 3883 6001 repeat (length 2118) 6001 30587 unique (length 24586) Creating Unitig 113473 Creating Unitig 113474 For tig 1800 unique region 0 3883 - 0/ 1 reads repeat/unique - unitig 113473 created. For tig 1800 repeat region 3883 6001 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1800 unique region 6001 30587 - 0/ 34 reads repeat/unique - unitig 113474 created. Annotating repeats in reads for tig 1803/113047. Annotated with 95 overlaps. Scan reads to discard spanned repeats. discard region 0:3224 - contained in read 654101 0- 5242 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1809/113047. Annotated with 802 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:18177 - closest 5' read 246097 ( +0) 0:4645 (-13532) saved region 0:18177 - closest 3' read 296250 ( -8183) 8183:18177 ( +0) search for confused edges: tig 1809 read 642904 pos 117-9971 NOT confused by 5' edge to read 48618 - best edge read 480132 len 6867 erate 0.0482 score 6536.01 - alt edge len 2852 erate 0.0543 score 2697.14 - absdiff 3838.87 percdiff 83.1542 tig 1809 read 642904 pos 117-9971 NOT confused by 5' edge to read 58734 - best edge read 480132 len 6867 erate 0.0482 score 6536.01 - alt edge len 4291 erate 0.0493 score 4079.45 - absdiff 2456.56 percdiff 46.2826 tig 1809 read 642904 pos 117-9971 IS confused by 5' edge to read 513091 - best edge read 480132 len 6867 erate 0.0482 score 6536.01 - alt edge len 6737 erate 0.0680 score 6278.88 - absdiff 257.13 percdiff 4.0129 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 48618 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 2428 erate 0.0634 score 2274.06 - absdiff 4326.15 percdiff 97.4986 tig 1809 read 480132 pos 2207-11154 NOT confused by 5' edge to read 201691 - best edge read 642904 len 6925 erate 0.0353 score 6680.55 - alt edge len 723 erate 0.0516 score 685.69 - absdiff 5994.85 percdiff 162.7656 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 432009 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 1417 erate 0.0717 score 1315.40 - absdiff 5284.81 percdiff 133.5288 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 432010 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 809 erate 0.0724 score 750.43 - absdiff 5849.79 percdiff 159.1639 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 462656 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 2469 erate 0.0430 score 2362.83 - absdiff 4237.38 percdiff 94.5523 tig 1809 read 480132 pos 2207-11154 NOT confused by 5' edge to read 611584 - best edge read 642904 len 6925 erate 0.0353 score 6680.55 - alt edge len 1763 erate 0.0303 score 1709.58 - absdiff 4970.97 percdiff 118.4956 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 130592 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2765 erate 0.0535 score 2617.07 - absdiff 2694.14 percdiff 67.9628 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 308216 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2622 erate 0.0580 score 2469.92 - absdiff 2841.29 percdiff 73.0302 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 408694 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2631 erate 0.0635 score 2463.93 - absdiff 2847.28 percdiff 73.2407 tig 1809 read 560477 pos 6358-17232 IS confused by 5' edge to read 515186 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 3734 erate 0.0469 score 3558.88 - absdiff 1752.34 percdiff 39.5112 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 585139 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 3020 erate 0.0554 score 2852.69 - absdiff 2458.52 percdiff 60.2291 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 611584 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2854 erate 0.0610 score 2679.91 - absdiff 2631.31 percdiff 65.8558 tig 1809 read 560477 pos 6358-17232 IS confused by 5' edge to read 633370 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 5257 erate 0.0554 score 4965.76 - absdiff 345.45 percdiff 6.7229 tig 1809 read 560477 pos 6358-17232 IS confused by 5' edge to read 701901 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 3702 erate 0.0573 score 3489.88 - absdiff 1821.34 percdiff 41.3890 saved region 0:18177 - 4 best edges are potentially confused Annotating repeats in reads for tig 1810/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 18004:21955 - contained in read 567193 15592- 21955 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1816/113047. Annotated with 388 overlaps. Scan reads to discard spanned repeats. discard region 28418:27195 - contained in read 696142 21778- 28418 thickest edges to the repeat regions: saved region 20778:26548 - closest read 69592 ( +188) 20590:26548 ( +0) (contained) saved region 20778:26548 - closest 5' read 69592 ( +188) 20590:26548 ( +0) saved region 20778:26548 - closest 3' read 69592 ( +188) 20590:26548 ( +0) saved region 30261:38793 - closest 5' read 43132 ( +2343) 27918:34961 ( -3832) saved region 30261:38793 - closest 3' read 482098 ( -575) 30836:38793 ( +0) search for confused edges: tig 1816 read 565743 pos 27067-34743 IS confused by 3' edge to read 63667 - best edge read 482098 len 3843 erate 0.0494 score 3653.16 - alt edge len 2118 erate 0.0535 score 2004.69 - absdiff 1648.47 percdiff 58.2720 discard region 20778:26548 - no confusion in best edges saved region 30261:38793 - 1 best edges are potentially confused break tig 1816 into up to 3 pieces: 0 29761 unique (length 29761) 29761 39293 repeat (length 9532) 39293 39460 unique (length 167) Creating Unitig 113475 Creating Unitig 113476 Creating Unitig 113477 For tig 1816 unique region 0 29761 - 0/ 71 reads repeat/unique - unitig 113475 created. For tig 1816 repeat region 29761 39293 - 26/ 0 reads repeat/unique - unitig 113476 created. For tig 1816 unique region 39293 39460 - 0/ 1 reads repeat/unique - unitig 113477 created. Annotating repeats in reads for tig 1817/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1824/113047. Annotated with 331 overlaps. Scan reads to discard spanned repeats. discard region 0:8823 - contained in read 545480 0- 9604 discard region 9936:10979 - contained in read 116762 4298- 12309 thickest edges to the repeat regions: saved region 11168:20621 - closest 5' read 393010 ( +1079) 10089:20492 ( -129) saved region 11168:20621 - closest 3' read 202664 ( -5044) 16212:20621 ( +0) search for confused edges: tig 1824 read 577504 pos 18236-21473 IS confused by 5' edge to read 533340 - best edge read 393010 len 2232 erate 0.0305 score 2163.92 - alt edge len 1516 erate 0.0323 score 1467.03 - absdiff 696.89 percdiff 38.3861 tig 1824 read 577504 pos 18236-21473 IS confused by 5' edge to read 620091 - best edge read 393010 len 2232 erate 0.0305 score 2163.92 - alt edge len 1676 erate 0.0328 score 1621.03 - absdiff 542.90 percdiff 28.6871 saved region 11168:20621 - 2 best edges are potentially confused break tig 1824 into up to 3 pieces: 0 10668 unique (length 10668) 10668 21121 repeat (length 10453) 21121 21473 unique (length 352) Creating Unitig 113478 Creating Unitig 113479 Creating Unitig 113480 For tig 1824 unique region 0 10668 - 0/ 39 reads repeat/unique - unitig 113478 created. For tig 1824 repeat region 10668 21121 - 45/ 0 reads repeat/unique - unitig 113479 created. For tig 1824 unique region 21121 21473 - 0/ 1 reads repeat/unique - unitig 113480 created. Annotating repeats in reads for tig 1825/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 21626:22275 - contained in read 441738 15995- 22931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1826/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8614:20020 - closest 5' read 188519 ( +1138) 7476:15523 ( -4497) saved region 8614:20020 - closest 3' read 633370 ( -2712) 11326:22353 ( +2333) search for confused edges: tig 1826 read 487994 pos 8621-19869 NOT confused by 5' edge to read 48618 - best edge read 633370 len 8538 erate 0.0226 score 8345.04 - alt edge len 1440 erate 0.0587 score 1355.47 - absdiff 6989.57 percdiff 144.1072 tig 1826 read 487994 pos 8621-19869 NOT confused by 5' edge to read 432009 - best edge read 633370 len 8538 erate 0.0226 score 8345.04 - alt edge len 564 erate 0.0623 score 528.86 - absdiff 7816.18 percdiff 176.1610 tig 1826 read 487994 pos 8621-19869 NOT confused by 5' edge to read 432010 - best edge read 633370 len 8538 erate 0.0226 score 8345.04 - alt edge len 570 erate 0.0616 score 534.89 - absdiff 7810.15 percdiff 175.9058 tig 1826 read 633370 pos 11326-22353 NOT confused by 3' edge to read 487992 - best edge read 487994 len 8508 erate 0.0226 score 8315.72 - alt edge len 1123 erate 0.0160 score 1105.03 - absdiff 7210.69 percdiff 153.0809 tig 1826 read 633370 pos 11326-22353 IS confused by 3' edge to read 487993 - best edge read 487994 len 8508 erate 0.0226 score 8315.72 - alt edge len 8324 erate 0.0277 score 8093.43 - absdiff 222.29 percdiff 2.7094 saved region 8614:20020 - 1 best edges are potentially confused break tig 1826 into up to 3 pieces: 0 8114 unique (length 8114) 8114 20520 repeat (length 12406) 20520 22353 unique (length 1833) Creating Unitig 113481 Creating Unitig 113482 Creating Unitig 113483 For tig 1826 unique region 0 8114 - 0/ 18 reads repeat/unique - unitig 113481 created. For tig 1826 repeat region 8114 20520 - 13/ 0 reads repeat/unique - unitig 113482 created. For tig 1826 unique region 20520 22353 - 0/ 1 reads repeat/unique - unitig 113483 created. Annotating repeats in reads for tig 1828/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9791:10785 - closest read 251545 ( +7028) 2763:10980 ( +195) (contained) saved region 9791:10785 - closest read 698182 ( +4012) 5779:10971 ( +186) (contained) saved region 9791:10785 - closest read 251546 ( +1215) 8576:10785 ( +0) (contained) saved region 9791:10785 - closest 5' read 251545 ( +7028) 2763:10980 ( +195) saved region 9791:10785 - closest 3' read 251545 ( +7028) 2763:10980 ( +195) search for confused edges: discard region 9791:10785 - no confusion in best edges Annotating repeats in reads for tig 1837/113047. Annotated with 159 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9180 - closest 5' read 590994 ( +0) 0:6458 ( -2722) saved region 0:9180 - closest 3' read 66891 ( -1599) 1599:9180 ( +0) search for confused edges: tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 52738 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1823 erate 0.0708 score 1693.93 - absdiff 4539.67 percdiff 114.5292 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 113252 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1715 erate 0.0671 score 1599.92 - absdiff 4633.68 percdiff 118.3038 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 140414 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 806 erate 0.0596 score 757.96 - absdiff 5475.64 percdiff 156.6356 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 140415 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 805 erate 0.0560 score 759.92 - absdiff 5473.68 percdiff 156.5358 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 350785 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1775 erate 0.0626 score 1663.88 - absdiff 4569.71 percdiff 115.7258 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 574860 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1135 erate 0.0503 score 1077.91 - absdiff 5155.69 percdiff 141.0294 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 606199 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 4086 erate 0.0722 score 3790.99 - absdiff 2442.61 percdiff 48.7323 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 638612 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1725 erate 0.0580 score 1624.95 - absdiff 4608.65 percdiff 117.2901 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 638614 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1776 erate 0.0653 score 1660.03 - absdiff 4573.57 percdiff 115.8801 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 21508 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 808 erate 0.0644 score 755.96 - absdiff 3914.64 percdiff 144.2767 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 52738 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1829 erate 0.0602 score 1718.89 - absdiff 2951.71 percdiff 92.3925 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 66611 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1779 erate 0.0652 score 1663.01 - absdiff 3007.59 percdiff 94.9724 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 113252 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1716 erate 0.0607 score 1611.84 - absdiff 3058.76 percdiff 97.3750 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 140414 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 803 erate 0.0523 score 761.00 - absdiff 3909.60 percdiff 143.9574 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 140415 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 802 erate 0.0486 score 763.02 - absdiff 3907.58 percdiff 143.8295 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 230529 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1088 erate 0.0708 score 1010.97 - absdiff 3659.63 percdiff 128.8246 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 350785 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1776 erate 0.0557 score 1677.08 - absdiff 2993.52 percdiff 94.3187 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 398969 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 661 erate 0.0742 score 611.95 - absdiff 4058.65 percdiff 153.6623 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 574860 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1130 erate 0.0451 score 1079.04 - absdiff 3591.56 percdiff 124.9318 tig 1837 read 590995 pos 11-6462 IS confused by 5' edge to read 606199 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 4113 erate 0.0565 score 3880.62 - absdiff 789.98 percdiff 18.4765 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 638612 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1724 erate 0.0484 score 1640.56 - absdiff 3030.04 percdiff 96.0217 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 638614 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1775 erate 0.0567 score 1674.36 - absdiff 2996.24 percdiff 94.4448 tig 1837 read 66891 pos 1599-9180 NOT confused by 5' edge to read 93171 - best edge read 590995 len 4831 erate 0.0320 score 4676.41 - alt edge len 546 erate 0.0568 score 514.99 - absdiff 4161.42 percdiff 160.3199 tig 1837 read 66891 pos 1599-9180 NOT confused by 5' edge to read 161947 - best edge read 590995 len 4831 erate 0.0320 score 4676.41 - alt edge len 546 erate 0.0495 score 518.97 - absdiff 4157.43 percdiff 160.0435 saved region 0:9180 - 1 best edges are potentially confused Annotating repeats in reads for tig 1845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1851/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 31178:34701 - contained in read 312686 26617- 34701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1853/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 678:0 - contained in read 342618 0- 5995 thickest edges to the repeat regions: saved region 9032:10922 - cl