repeatDetect()-- working on 113047 tigs, with 12 threads. Annotating repeats in reads for tig 1/113047. Annotated with 1497 overlaps. Scan reads to discard spanned repeats. discard region 48257:47451 - contained in read 120595 39655- 48381 thickest edges to the repeat regions: saved region 1610:7959 - closest read 144564 ( +131) 1479:11215 ( +3256) (contained) saved region 1610:7959 - closest read 156067 ( +0) 1610:8439 ( +480) (contained) saved region 1610:7959 - closest 5' read 144564 ( +131) 1479:11215 ( +3256) saved region 1610:7959 - closest 3' read 144564 ( +131) 1479:11215 ( +3256) saved region 8425:46549 - closest 5' read 520999 ( +2201) 6224:20783 (-25766) saved region 8425:46549 - closest 3' read 458296 (-28864) 37289:46549 ( +0) saved region 50888:61885 - closest 5' read 574036 ( +701) 50187:58905 ( -2980) saved region 50888:61885 - closest 3' read 570851 ( -4511) 55399:61885 ( +0) search for confused edges: tig 1 read 156069 pos 0-7011 IS confused by 5' edge to read 334852 - best edge read 540785 len 1632 erate 0.0479 score 1553.83 - alt edge len 789 erate 0.0635 score 738.90 - absdiff 814.93 percdiff 71.0882 tig 1 read 156069 pos 0-7011 IS confused by 5' edge to read 596938 - best edge read 540785 len 1632 erate 0.0479 score 1553.83 - alt edge len 512 erate 0.0653 score 478.57 - absdiff 1075.26 percdiff 105.8123 tig 1 read 156069 pos 0-7011 IS confused by 5' edge to read 658011 - best edge read 540785 len 1632 erate 0.0479 score 1553.83 - alt edge len 680 erate 0.0457 score 648.92 - absdiff 904.90 percdiff 82.1612 tig 1 read 433814 pos 5259-19684 NOT confused by 5' edge to read 313926 - best edge read 470923 len 5805 erate 0.0512 score 5507.78 - alt edge len 1350 erate 0.0539 score 1277.23 - absdiff 4230.55 percdiff 124.7026 tig 1 read 470923 pos 12550-19384 NOT confused by 5' edge to read 313926 - best edge read 254965 len 6600 erate 0.0666 score 6160.44 - alt edge len 1034 erate 0.0516 score 980.65 - absdiff 5179.79 percdiff 145.0702 tig 1 read 470923 pos 12550-19384 NOT confused by 5' edge to read 570851 - best edge read 254965 len 6600 erate 0.0666 score 6160.44 - alt edge len 1045 erate 0.0412 score 1001.95 - absdiff 5158.49 percdiff 144.0440 tig 1 read 254965 pos 12792-20078 IS confused by 3' edge to read 269147 - best edge read 470923 len 6482 erate 0.0666 score 6050.30 - alt edge len 4610 erate 0.0505 score 4377.19 - absdiff 1673.10 percdiff 32.0902 tig 1 read 254965 pos 12792-20078 NOT confused by 5' edge to read 313926 - best edge read 643973 len 5868 erate 0.0598 score 5517.09 - alt edge len 1680 erate 0.0352 score 1620.86 - absdiff 3896.23 percdiff 109.1693 tig 1 read 254965 pos 12792-20078 NOT confused by 5' edge to read 570851 - best edge read 643973 len 5868 erate 0.0598 score 5517.09 - alt edge len 2771 erate 0.0231 score 2706.99 - absdiff 2810.10 percdiff 68.3384 tig 1 read 643973 pos 14048-21984 NOT confused by 3' edge to read 269147 - best edge read 254965 len 6034 erate 0.0598 score 5673.17 - alt edge len 3336 erate 0.0348 score 3219.91 - absdiff 2453.26 percdiff 55.1724 tig 1 read 643973 pos 14048-21984 NOT confused by 3' edge to read 415023 - best edge read 254965 len 6034 erate 0.0598 score 5673.17 - alt edge len 764 erate 0.0615 score 717.01 - absdiff 4956.15 percdiff 155.1178 tig 1 read 643973 pos 14048-21984 NOT confused by 5' edge to read 570851 - best edge read 636914 len 6948 erate 0.0328 score 6720.11 - alt edge len 2141 erate 0.0366 score 2062.64 - absdiff 4657.47 percdiff 106.0595 tig 1 read 636914 pos 14293-22382 NOT confused by 3' edge to read 269147 - best edge read 643973 len 6981 erate 0.0328 score 6752.02 - alt edge len 2553 erate 0.0554 score 2411.56 - absdiff 4340.46 percdiff 94.7328 tig 1 read 193760 pos 14526-21553 NOT confused by 3' edge to read 207090 - best edge read 193758 len 6838 erate 0.0269 score 6654.06 - alt edge len 761 erate 0.0599 score 715.42 - absdiff 5938.64 percdiff 161.1687 tig 1 read 193760 pos 14526-21553 NOT confused by 3' edge to read 458296 - best edge read 193758 len 6838 erate 0.0269 score 6654.06 - alt edge len 841 erate 0.0693 score 782.72 - absdiff 5871.34 percdiff 157.9001 tig 1 read 193760 pos 14526-21553 NOT confused by 3' edge to read 570851 - best edge read 193758 len 6838 erate 0.0269 score 6654.06 - alt edge len 2957 erate 0.0308 score 2865.92 - absdiff 3788.13 percdiff 79.5828 tig 1 read 270668 pos 16712-28312 NOT confused by 5' edge to read 570851 - best edge read 313926 len 7052 erate 0.0268 score 6863.01 - alt edge len 1500 erate 0.0334 score 1449.90 - absdiff 5413.11 percdiff 130.2338 tig 1 read 270668 pos 16712-28312 NOT confused by 3' edge to read 574035 - best edge read 525789 len 9462 erate 0.0278 score 9198.96 - alt edge len 1612 erate 0.0485 score 1533.82 - absdiff 7665.14 percdiff 142.8361 tig 1 read 525789 pos 16995-26623 NOT confused by 3' edge to read 458296 - best edge read 270668 len 9457 erate 0.0278 score 9194.10 - alt edge len 806 erate 0.0612 score 756.67 - absdiff 8437.42 percdiff 169.5833 tig 1 read 525789 pos 16995-26623 NOT confused by 3' edge to read 570851 - best edge read 270668 len 9457 erate 0.0278 score 9194.10 - alt edge len 1674 erate 0.0275 score 1627.97 - absdiff 7566.13 percdiff 139.8279 tig 1 read 525789 pos 16995-26623 IS confused by 5' edge to read 574035 - best edge read 193758 len 2048 erate 0.0450 score 1955.84 - alt edge len 1623 erate 0.0462 score 1548.02 - absdiff 407.82 percdiff 23.2785 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 193758 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1944 erate 0.0376 score 1870.91 - absdiff 4996.97 percdiff 114.3631 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 254965 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1681 erate 0.0352 score 1621.83 - absdiff 5246.04 percdiff 123.5861 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 317143 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 2355 erate 0.0493 score 2238.90 - absdiff 948.72 percdiff 34.9660 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 433814 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1345 erate 0.0539 score 1272.50 - absdiff 5595.37 percdiff 137.4720 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 458296 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 1987 erate 0.0290 score 1929.38 - absdiff 1258.24 percdiff 49.1788 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 470923 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1030 erate 0.0516 score 976.85 - absdiff 5891.02 percdiff 150.1906 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 570851 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1759 erate 0.0302 score 1705.88 - absdiff 5161.99 percdiff 120.4139 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 574035 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1526 erate 0.0390 score 1466.49 - absdiff 5401.39 percdiff 129.6173 tig 1 read 313926 pos 20353-34510 NOT confused by 5' edge to read 574036 - best edge read 270668 len 7057 erate 0.0268 score 6867.87 - alt edge len 1562 erate 0.0491 score 1485.31 - absdiff 5382.57 percdiff 128.8747 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 595709 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 2577 erate 0.0308 score 2497.63 - absdiff 689.99 percdiff 24.2729 tig 1 read 313926 pos 20353-34510 IS confused by 3' edge to read 606433 - best edge read 223206 len 3253 erate 0.0201 score 3187.61 - alt edge len 1859 erate 0.0361 score 1791.89 - absdiff 1395.72 percdiff 56.0588 tig 1 read 223206 pos 29776-39710 NOT confused by 3' edge to read 317143 - best edge read 514260 len 9691 erate 0.0127 score 9567.92 - alt edge len 1660 erate 0.0596 score 1561.06 - absdiff 8006.86 percdiff 143.8920 tig 1 read 223206 pos 29776-39710 NOT confused by 3' edge to read 595709 - best edge read 514260 len 9691 erate 0.0127 score 9567.92 - alt edge len 2215 erate 0.0254 score 2158.74 - absdiff 7409.19 percdiff 126.3648 tig 1 read 223206 pos 29776-39710 NOT confused by 3' edge to read 606433 - best edge read 514260 len 9691 erate 0.0127 score 9567.92 - alt edge len 826 erate 0.0343 score 797.67 - absdiff 8770.26 percdiff 169.2186 tig 1 read 514260 pos 31032-42522 NOT confused by 5' edge to read 317143 - best edge read 304885 len 11078 erate 0.0359 score 10680.30 - alt edge len 2629 erate 0.0488 score 2500.70 - absdiff 8179.59 percdiff 124.1119 tig 1 read 514260 pos 31032-42522 NOT confused by 5' edge to read 595709 - best edge read 304885 len 11078 erate 0.0359 score 10680.30 - alt edge len 2851 erate 0.0325 score 2758.34 - absdiff 7921.96 percdiff 117.8982 tig 1 read 207090 pos 34485-45670 NOT confused by 5' edge to read 193760 - best edge read 458296 len 8109 erate 0.0251 score 7905.46 - alt edge len 762 erate 0.0599 score 716.36 - absdiff 7189.11 percdiff 166.7654 tig 1 read 458296 pos 37289-46549 NOT confused by 5' edge to read 313926 - best edge read 207090 len 8126 erate 0.0251 score 7922.04 - alt edge len 1965 erate 0.0290 score 1908.01 - absdiff 6014.02 percdiff 122.3599 tig 1 read 574036 pos 50187-58905 IS confused by 3' edge to read 313926 - best edge read 570851 len 2702 erate 0.0497 score 2567.71 - alt edge len 1573 erate 0.0491 score 1495.77 - absdiff 1071.94 percdiff 52.7600 saved region 1610:7959 - 3 best edges are potentially confused saved region 8425:46549 - 6 best edges are potentially confused saved region 50888:61885 - 1 best edges are potentially confused merge extended regions 1110:8459 and 7925:47049 break tig 1 into up to 4 pieces: 0 1110 unique (length 1110) 1110 47049 repeat (length 45939) 47049 50388 unique (length 3339) 50388 61885 repeat (length 11497) Creating Unitig 113047 Creating Unitig 113048 Creating Unitig 113049 Creating Unitig 113050 For tig 1 unique region 0 1110 - 0/ 1 reads repeat/unique - unitig 113047 created. For tig 1 repeat region 1110 47049 - 310/ 0 reads repeat/unique - unitig 113048 created. For tig 1 unique region 47049 50388 - 0/ 51 reads repeat/unique - unitig 113049 created. For tig 1 repeat region 50388 61885 - 26/ 0 reads repeat/unique - unitig 113050 created. Annotating repeats in reads for tig 2/113047. Annotated with 82 overlaps. Scan reads to discard spanned repeats. discard region 22683:21179 - contained in read 588983 17317- 26374 discard region 55577:56680 - contained in read 309476 50483- 58307 thickest edges to the repeat regions: saved region 22919:40468 - closest 5' read 349571 ( +0) 22919:31746 ( -8722) saved region 22919:40468 - closest 3' read 482852 ( -8587) 31506:41779 ( +1311) saved region 42806:50396 - closest read 17063 ( +212) 42594:50878 ( +482) (contained) saved region 42806:50396 - closest read 629269 ( +210) 42596:52080 ( +1684) (contained) saved region 42806:50396 - closest 5' read 629269 ( +210) 42596:52080 ( +1684) saved region 42806:50396 - closest 3' read 17063 ( +212) 42594:50878 ( +482) search for confused edges: tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 92087 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 2249 erate 0.0307 score 2179.96 - absdiff 5798.59 percdiff 114.1623 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 234370 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 1668 erate 0.0264 score 1623.96 - absdiff 6354.58 percdiff 132.3525 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 536214 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 1044 erate 0.0297 score 1012.99 - absdiff 6965.55 percdiff 154.9357 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 536216 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 1034 erate 0.0261 score 1007.01 - absdiff 6971.53 percdiff 155.1719 tig 2 read 349571 pos 22919-31746 NOT confused by 3' edge to read 636841 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 2476 erate 0.0210 score 2424.00 - absdiff 5554.54 percdiff 106.7919 tig 2 read 349571 pos 22919-31746 IS confused by 3' edge to read 642492 - best edge read 139209 len 8119 erate 0.0173 score 7978.54 - alt edge len 6077 erate 0.0183 score 5965.79 - absdiff 2012.75 percdiff 28.8684 tig 2 read 139209 pos 23526-33165 NOT confused by 3' edge to read 266466 - best edge read 349571 len 8130 erate 0.0173 score 7989.35 - alt edge len 2506 erate 0.0526 score 2374.18 - absdiff 5615.17 percdiff 108.3639 tig 2 read 676110 pos 27632-38443 NOT confused by 5' edge to read 234370 - best edge read 676111 len 10654 erate 0.0102 score 10545.33 - alt edge len 8275 erate 0.0063 score 8222.87 - absdiff 2322.46 percdiff 24.7489 tig 2 read 676110 pos 27632-38443 IS confused by 5' edge to read 636841 - best edge read 676111 len 10654 erate 0.0102 score 10545.33 - alt edge len 9071 erate 0.0078 score 9000.25 - absdiff 1545.08 percdiff 15.8101 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 333093 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 2801 erate 0.0268 score 2725.93 - absdiff 2616.08 percdiff 64.8511 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 333094 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 1979 erate 0.0369 score 1905.97 - absdiff 3436.03 percdiff 94.8135 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 539525 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 2647 erate 0.0053 score 2632.97 - absdiff 2709.04 percdiff 67.9384 tig 2 read 443923 pos 32664-46823 NOT confused by 5' edge to read 539526 - best edge read 676111 len 5733 erate 0.0682 score 5342.01 - alt edge len 2656 erate 0.0064 score 2639.00 - absdiff 2703.01 percdiff 67.7360 saved region 22919:40468 - 2 best edges are potentially confused discard region 42806:50396 - no confusion in best edges break tig 2 into up to 3 pieces: 0 22419 unique (length 22419) 22419 40968 repeat (length 18549) 40968 63110 unique (length 22142) Creating Unitig 113051 Creating Unitig 113052 Creating Unitig 113053 For tig 2 unique region 0 22419 - 0/ 62 reads repeat/unique - unitig 113051 created. For tig 2 repeat region 22419 40968 - 76/ 0 reads repeat/unique - unitig 113052 created. For tig 2 unique region 40968 63110 - 0/ 74 reads repeat/unique - unitig 113053 created. Annotating repeats in reads for tig 3/113047. Annotated with 1492 overlaps. Scan reads to discard spanned repeats. discard region 45083:46651 - contained in read 413350 44057- 48868 discard region 48459:49585 - contained in read 413351 44220- 50683 thickest edges to the repeat regions: saved region 1022:40142 - closest 5' read 495690 ( +0) 1022:9059 (-31083) saved region 1022:40142 - closest 3' read 329056 (-30943) 31965:40142 ( +0) saved region 43598:44478 - closest read 109529 ( +591) 43007:44483 ( +5) (contained) saved region 43598:44478 - closest read 559180 ( +0) 43598:45286 ( +808) (contained) saved region 43598:44478 - closest 5' read 559180 ( +0) 43598:45286 ( +808) saved region 43598:44478 - closest 3' read 109529 ( +591) 43007:44483 ( +5) search for confused edges: tig 3 read 190042 pos 3184-14057 IS confused by 5' edge to read 9364 - best edge read 402150 len 2844 erate 0.0254 score 2771.76 - alt edge len 2562 erate 0.0464 score 2443.12 - absdiff 328.64 percdiff 12.6039 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 52738 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 1928 erate 0.0556 score 1820.80 - absdiff 6649.17 percdiff 129.2258 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 56594 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 2733 erate 0.0517 score 2591.70 - absdiff 5878.27 percdiff 106.2817 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 130671 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 1834 erate 0.0665 score 1712.04 - absdiff 6757.94 percdiff 132.7426 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 140414 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 903 erate 0.0744 score 835.82 - absdiff 7634.16 percdiff 164.0733 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 350785 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 1884 erate 0.0512 score 1787.54 - absdiff 6682.44 percdiff 130.2935 tig 3 read 190042 pos 3184-14057 NOT confused by 5' edge to read 516253 - best edge read 402150 len 2844 erate 0.0254 score 2771.76 - alt edge len 512 erate 0.0332 score 495.00 - absdiff 2276.76 percdiff 139.3894 tig 3 read 190042 pos 3184-14057 NOT confused by 5' edge to read 516254 - best edge read 402150 len 2844 erate 0.0254 score 2771.76 - alt edge len 510 erate 0.0353 score 492.00 - absdiff 2279.77 percdiff 139.7018 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 664057 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 2773 erate 0.0604 score 2605.51 - absdiff 5864.47 percdiff 105.8999 tig 3 read 190042 pos 3184-14057 NOT confused by 3' edge to read 664058 - best edge read 27915 len 8769 erate 0.0341 score 8469.98 - alt edge len 2789 erate 0.0671 score 2601.86 - absdiff 5868.12 percdiff 106.0008 tig 3 read 27915 pos 4898-14347 NOT confused by 3' edge to read 9364 - best edge read 190042 len 8752 erate 0.0372 score 8426.43 - alt edge len 2354 erate 0.0487 score 2239.36 - absdiff 6187.07 percdiff 116.0171 tig 3 read 27915 pos 4898-14347 NOT confused by 5' edge to read 52738 - best edge read 196098 len 4722 erate 0.0580 score 4448.12 - alt edge len 2482 erate 0.0612 score 2330.10 - absdiff 2118.02 percdiff 62.4949 tig 3 read 27915 pos 4898-14347 IS confused by 5' edge to read 56594 - best edge read 196098 len 4722 erate 0.0580 score 4448.12 - alt edge len 3327 erate 0.0616 score 3122.06 - absdiff 1326.07 percdiff 35.0340 tig 3 read 27915 pos 4898-14347 NOT confused by 5' edge to read 350785 - best edge read 196098 len 4722 erate 0.0580 score 4448.12 - alt edge len 2430 erate 0.0650 score 2272.05 - absdiff 2176.07 percdiff 64.7624 tig 3 read 196098 pos 8261-14166 NOT confused by 3' edge to read 9364 - best edge read 27915 len 4742 erate 0.0580 score 4466.96 - alt edge len 1311 erate 0.0568 score 1236.54 - absdiff 3230.43 percdiff 113.2788 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 21508 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 704 erate 0.0555 score 664.93 - absdiff 5051.24 percdiff 158.3189 tig 3 read 196098 pos 8261-14166 IS confused by 5' edge to read 56594 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 4481 erate 0.0427 score 4289.66 - absdiff 1426.51 percdiff 28.5136 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 113252 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1615 erate 0.0590 score 1519.72 - absdiff 4196.46 percdiff 115.9901 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 130671 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1632 erate 0.0589 score 1535.88 - absdiff 4180.30 percdiff 115.2860 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 140414 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 699 erate 0.0415 score 669.99 - absdiff 5046.18 percdiff 158.0348 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 140415 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 698 erate 0.0403 score 669.87 - absdiff 5046.30 percdiff 158.0416 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 172419 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1434 erate 0.0703 score 1333.19 - absdiff 4382.98 percdiff 124.3512 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 230528 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 2697 erate 0.0697 score 2509.02 - absdiff 3207.15 percdiff 77.9837 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 230529 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 2935 erate 0.0619 score 2753.32 - absdiff 2962.85 percdiff 69.9652 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 350785 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1671 erate 0.0665 score 1559.88 - absdiff 4156.29 percdiff 114.2459 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 398969 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 552 erate 0.0585 score 519.71 - absdiff 5196.46 percdiff 166.6634 tig 3 read 196098 pos 8261-14166 NOT confused by 3' edge to read 402149 - best edge read 27915 len 4742 erate 0.0580 score 4466.96 - alt edge len 1433 erate 0.0336 score 1384.85 - absdiff 3082.11 percdiff 105.3387 tig 3 read 196098 pos 8261-14166 NOT confused by 3' edge to read 402150 - best edge read 27915 len 4742 erate 0.0580 score 4466.96 - alt edge len 1593 erate 0.0341 score 1538.68 - absdiff 2928.29 percdiff 97.5178 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 536734 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1481 erate 0.0692 score 1378.51 - absdiff 4337.66 percdiff 122.2790 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 574860 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1021 erate 0.0559 score 963.93 - absdiff 4752.25 percdiff 142.2807 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 638612 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1631 erate 0.0688 score 1518.79 - absdiff 4197.39 percdiff 116.0307 tig 3 read 196098 pos 8261-14166 NOT confused by 5' edge to read 638614 - best edge read 196101 len 5876 erate 0.0272 score 5716.17 - alt edge len 1673 erate 0.0670 score 1560.91 - absdiff 4155.26 percdiff 114.2014 tig 3 read 196101 pos 8286-14255 NOT confused by 5' edge to read 9364 - best edge read 196098 len 5871 erate 0.0272 score 5711.31 - alt edge len 1310 erate 0.0522 score 1241.62 - absdiff 4469.69 percdiff 128.5701 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 21508 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 769 erate 0.0625 score 720.94 - absdiff 4470.77 percdiff 151.2274 tig 3 read 196101 pos 8286-14255 IS confused by 3' edge to read 56594 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 4545 erate 0.0449 score 4340.93 - absdiff 850.77 percdiff 17.8497 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 113252 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 1688 erate 0.0615 score 1584.19 - absdiff 3607.51 percdiff 106.4809 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 130671 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 1705 erate 0.0682 score 1588.72 - absdiff 3602.98 percdiff 106.2761 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 140414 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 764 erate 0.0485 score 726.95 - absdiff 4464.76 percdiff 150.8708 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 140415 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 763 erate 0.0461 score 727.83 - absdiff 4463.88 percdiff 150.8187 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 230528 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 2765 erate 0.0703 score 2570.62 - absdiff 2621.08 percdiff 67.5335 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 230529 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 3002 erate 0.0609 score 2819.18 - absdiff 2372.52 percdiff 59.2326 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 350785 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 1744 erate 0.0725 score 1617.56 - absdiff 3574.14 percdiff 104.9789 tig 3 read 196101 pos 8286-14255 NOT confused by 3' edge to read 398969 - best edge read 601472 len 5555 erate 0.0654 score 5191.70 - alt edge len 619 erate 0.0738 score 573.32 - absdiff 4618.39 percdiff 160.2209 tig 3 read 196101 pos 8286-14255 NOT confused by 5' edge to read 402149 - best edge read 196098 len 5871 erate 0.0272 score 5711.31 - alt edge len 1430 erate 0.0287 score 1388.96 - absdiff 4322.35 percdiff 121.7517 tig 3 read 196101 pos 8286-14255 NOT confused by 5' edge to read 402150 - best edge read 196098 len 5871 erate 0.0272 score 5711.31 - alt edge len 1590 erate 0.0297 score 1542.78 - absdiff 4168.53 percdiff 114.9292 tig 3 read 601474 pos 8496-14173 NOT confused by 5' edge to read 9364 - best edge read 601472 len 5637 erate 0.0233 score 5505.66 - alt edge len 927 erate 0.0518 score 878.98 - absdiff 4626.68 percdiff 144.9315 tig 3 read 601474 pos 8496-14173 IS confused by 3' edge to read 56594 - best edge read 601475 len 5637 erate 0.0308 score 5463.38 - alt edge len 4636 erate 0.0685 score 4318.43 - absdiff 1144.95 percdiff 23.4097 tig 3 read 601474 pos 8496-14173 NOT confused by 3' edge to read 113252 - best edge read 601475 len 5637 erate 0.0308 score 5463.38 - alt edge len 1787 erate 0.0595 score 1680.67 - absdiff 3782.71 percdiff 105.8981 tig 3 read 601474 pos 8496-14173 NOT confused by 3' edge to read 113253 - best edge read 601475 len 5637 erate 0.0308 score 5463.38 - alt edge len 1577 erate 0.0737 score 1460.78 - absdiff 4002.61 percdiff 115.6128 tig 3 read 601474 pos 8496-14173 NOT confused by 5' edge to read 402149 - best edge read 601472 len 5637 erate 0.0233 score 5505.66 - alt edge len 1049 erate 0.0258 score 1021.94 - absdiff 4483.72 percdiff 137.3775 tig 3 read 601474 pos 8496-14173 NOT confused by 5' edge to read 402150 - best edge read 601472 len 5637 erate 0.0233 score 5505.66 - alt edge len 1206 erate 0.0275 score 1172.84 - absdiff 4332.82 percdiff 129.7545 tig 3 read 601472 pos 8573-14258 NOT confused by 5' edge to read 9364 - best edge read 196101 len 5562 erate 0.0654 score 5198.25 - alt edge len 923 erate 0.0553 score 871.96 - absdiff 4326.29 percdiff 142.5418 tig 3 read 601472 pos 8573-14258 IS confused by 3' edge to read 56594 - best edge read 601474 len 5660 erate 0.0233 score 5528.12 - alt edge len 4654 erate 0.0686 score 4334.74 - absdiff 1193.39 percdiff 24.1996 tig 3 read 601472 pos 8573-14258 NOT confused by 3' edge to read 113252 - best edge read 601474 len 5660 erate 0.0233 score 5528.12 - alt edge len 1781 erate 0.0638 score 1667.37 - absdiff 3860.75 percdiff 107.3102 tig 3 read 601472 pos 8573-14258 NOT confused by 3' edge to read 113253 - best edge read 601474 len 5660 erate 0.0233 score 5528.12 - alt edge len 1574 erate 0.0723 score 1460.20 - absdiff 4067.92 percdiff 116.4206 tig 3 read 601472 pos 8573-14258 NOT confused by 5' edge to read 402149 - best edge read 196101 len 5562 erate 0.0654 score 5198.25 - alt edge len 1046 erate 0.0315 score 1013.05 - absdiff 4185.19 percdiff 134.7607 tig 3 read 601472 pos 8573-14258 NOT confused by 5' edge to read 402150 - best edge read 196101 len 5562 erate 0.0654 score 5198.25 - alt edge len 1207 erate 0.0300 score 1170.79 - absdiff 4027.46 percdiff 126.4699 tig 3 read 601475 pos 8667-14333 NOT confused by 3' edge to read 9364 - best edge read 601474 len 5629 erate 0.0308 score 5455.63 - alt edge len 913 erate 0.0636 score 854.93 - absdiff 4600.69 percdiff 145.8094 tig 3 read 601475 pos 8667-14333 NOT confused by 3' edge to read 402149 - best edge read 601474 len 5629 erate 0.0308 score 5455.63 - alt edge len 1034 erate 0.0397 score 992.95 - absdiff 4462.68 percdiff 138.4081 tig 3 read 601475 pos 8667-14333 NOT confused by 3' edge to read 402150 - best edge read 601474 len 5629 erate 0.0308 score 5455.63 - alt edge len 1195 erate 0.0387 score 1148.75 - absdiff 4306.87 percdiff 130.4248 tig 3 read 51481 pos 13740-22172 NOT confused by 3' edge to read 17199 - best edge read 51480 len 8405 erate 0.0457 score 8020.89 - alt edge len 863 erate 0.0707 score 801.99 - absdiff 7218.91 percdiff 163.6406 tig 3 read 51480 pos 13902-22268 NOT confused by 5' edge to read 17199 - best edge read 481664 len 5639 erate 0.0403 score 5411.75 - alt edge len 865 erate 0.0492 score 822.44 - absdiff 4589.31 percdiff 147.2302 tig 3 read 51480 pos 13902-22268 NOT confused by 3' edge to read 664057 - best edge read 51481 len 8326 erate 0.0457 score 7945.50 - alt edge len 950 erate 0.0705 score 883.02 - absdiff 7062.48 percdiff 159.9922 tig 3 read 51480 pos 13902-22268 NOT confused by 3' edge to read 664058 - best edge read 51481 len 8326 erate 0.0457 score 7945.50 - alt edge len 948 erate 0.0728 score 878.99 - absdiff 7066.52 percdiff 160.1570 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 36062 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 1242 erate 0.0606 score 1166.73 - absdiff 3772.69 percdiff 123.5700 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 93171 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 2051 erate 0.0544 score 1939.43 - absdiff 3511.67 percdiff 95.0317 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 287455 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 1720 erate 0.0623 score 1612.84 - absdiff 3326.58 percdiff 101.5398 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 287457 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 1756 erate 0.0658 score 1640.46 - absdiff 3298.97 percdiff 100.2745 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 682536 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 1870 erate 0.0648 score 1748.82 - absdiff 3702.27 percdiff 102.8420 tig 3 read 481664 pos 16738-24349 NOT confused by 3' edge to read 691283 - best edge read 638614 len 5333 erate 0.0738 score 4939.42 - alt edge len 2628 erate 0.0684 score 2448.24 - absdiff 2491.18 percdiff 67.4416 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 716843 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 1354 erate 0.0680 score 1261.93 - absdiff 4189.17 percdiff 124.8072 tig 3 read 481664 pos 16738-24349 NOT confused by 5' edge to read 716844 - best edge read 51480 len 5680 erate 0.0403 score 5451.10 - alt edge len 1449 erate 0.0657 score 1353.80 - absdiff 4097.30 percdiff 120.4220 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 36062 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 707 erate 0.0610 score 663.87 - absdiff 5790.90 percdiff 162.6967 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 270935 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 2208 erate 0.0558 score 2084.79 - absdiff 7811.54 percdiff 130.3974 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 287455 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 4475 erate 0.0509 score 4247.22 - absdiff 2207.55 percdiff 41.2549 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 287457 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 1207 erate 0.0520 score 1144.24 - absdiff 5310.53 percdiff 139.7692 tig 3 read 563230 pos 18819-29218 NOT confused by 5' edge to read 327420 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 4482 erate 0.0598 score 4213.98 - absdiff 2240.79 percdiff 42.0067 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 539919 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 6069 erate 0.0468 score 5784.97 - absdiff 4111.36 percdiff 52.4365 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 644710 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 1882 erate 0.0699 score 1750.45 - absdiff 8145.89 percdiff 139.8822 tig 3 read 563230 pos 18819-29218 IS confused by 5' edge to read 691283 - best edge read 653348 len 6829 erate 0.0548 score 6454.77 - alt edge len 5399 erate 0.0635 score 5056.16 - absdiff 1398.61 percdiff 24.3005 tig 3 read 563230 pos 18819-29218 NOT confused by 3' edge to read 718181 - best edge read 563229 len 10233 erate 0.0329 score 9896.33 - alt edge len 5275 erate 0.0402 score 5062.94 - absdiff 4833.39 percdiff 64.6206 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 40822 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 982 erate 0.0571 score 925.93 - absdiff 5328.92 percdiff 148.4218 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 113253 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1275 erate 0.0499 score 1211.38 - absdiff 5043.47 percdiff 135.1009 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 130671 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 853 erate 0.0616 score 800.46 - absdiff 5454.39 percdiff 154.6182 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 196098 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1031 erate 0.0559 score 973.37 - absdiff 5281.48 percdiff 146.1351 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 230529 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1196 erate 0.0538 score 1131.66 - absdiff 5123.19 percdiff 138.7177 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 350785 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1354 erate 0.0619 score 1270.19 - absdiff 4984.66 percdiff 132.4820 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 590994 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1151 erate 0.0503 score 1093.10 - absdiff 5161.74 percdiff 140.4947 tig 3 read 574860 pos 18902-27809 NOT confused by 5' edge to read 590995 - best edge read 638612 len 6607 erate 0.0533 score 6254.85 - alt edge len 1152 erate 0.0451 score 1100.04 - absdiff 5154.80 percdiff 140.1734 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 40822 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1637 erate 0.0649 score 1530.76 - absdiff 3404.03 percdiff 105.2976 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 113253 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1925 erate 0.0609 score 1807.77 - absdiff 3127.03 percdiff 92.7548 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 196098 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1689 erate 0.0671 score 1575.67 - absdiff 3359.13 percdiff 103.1916 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 230529 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1849 erate 0.0667 score 1725.67 - absdiff 3209.12 percdiff 96.3633 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 350785 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 2002 erate 0.0705 score 1860.86 - absdiff 3073.93 percdiff 90.4677 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 590994 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1804 erate 0.0614 score 1693.23 - absdiff 3241.56 percdiff 97.8137 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 590995 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 1805 erate 0.0569 score 1702.30 - absdiff 3232.50 percdiff 97.4071 tig 3 read 638614 pos 19766-27132 NOT confused by 3' edge to read 629732 - best edge read 481664 len 5328 erate 0.0738 score 4934.79 - alt edge len 2193 erate 0.0638 score 2053.09 - absdiff 2881.71 percdiff 82.4773 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 40822 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1595 erate 0.0673 score 1487.66 - absdiff 5605.90 percdiff 130.6552 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 113253 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1888 erate 0.0618 score 1771.32 - absdiff 5322.24 percdiff 120.0747 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 130671 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1466 erate 0.0673 score 1367.34 - absdiff 5726.22 percdiff 135.3573 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 196098 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1650 erate 0.0688 score 1536.48 - absdiff 5557.08 percdiff 128.7846 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 230529 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1814 erate 0.0661 score 1694.09 - absdiff 5399.46 percdiff 122.8875 tig 3 read 638612 pos 19853-27179 NOT confused by 5' edge to read 287455 - best edge read 574860 len 6607 erate 0.0616 score 6200.01 - alt edge len 3625 erate 0.0684 score 3377.05 - absdiff 2822.96 percdiff 58.9525 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 350785 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1967 erate 0.0749 score 1819.67 - absdiff 5273.89 percdiff 118.3384 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 590994 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1769 erate 0.0546 score 1672.41 - absdiff 5421.15 percdiff 123.6862 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 590995 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 1770 erate 0.0488 score 1683.62 - absdiff 5409.94 percdiff 123.2727 tig 3 read 638612 pos 19853-27179 NOT confused by 3' edge to read 629732 - best edge read 638614 len 7228 erate 0.0186 score 7093.56 - alt edge len 2159 erate 0.0676 score 2013.05 - absdiff 5080.51 percdiff 111.5785 tig 3 read 638612 pos 19853-27179 IS confused by 5' edge to read 691283 - best edge read 574860 len 6607 erate 0.0616 score 6200.01 - alt edge len 4538 erate 0.0680 score 4229.42 - absdiff 1970.59 percdiff 37.7891 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 116666 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 1076 erate 0.0457 score 1026.83 - absdiff 5661.34 percdiff 146.7620 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 270935 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2714 erate 0.0372 score 2613.04 - absdiff 4075.12 percdiff 87.6257 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 287455 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 4421 erate 0.0600 score 4155.74 - absdiff 5721.25 percdiff 81.5415 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 287457 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 4457 erate 0.0652 score 4166.40 - absdiff 5710.59 percdiff 81.3277 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 327420 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 4427 erate 0.0716 score 4110.03 - absdiff 5766.97 percdiff 82.4617 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 539919 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 3271 erate 0.0378 score 3147.36 - absdiff 3540.81 percdiff 72.0004 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644706 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2824 erate 0.0646 score 2641.57 - absdiff 4046.59 percdiff 86.7462 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644708 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2878 erate 0.0604 score 2704.17 - absdiff 3983.99 percdiff 84.8350 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644709 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2787 erate 0.0539 score 2636.78 - absdiff 4051.38 percdiff 86.8934 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 644710 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2387 erate 0.0497 score 2268.37 - absdiff 4419.80 percdiff 98.6944 tig 3 read 563229 pos 21082-31938 NOT confused by 3' edge to read 691283 - best edge read 563230 len 10213 erate 0.0329 score 9876.99 - alt edge len 5337 erate 0.0708 score 4959.14 - absdiff 4917.85 percdiff 66.2956 tig 3 read 563229 pos 21082-31938 NOT confused by 5' edge to read 718181 - best edge read 574860 len 7147 erate 0.0642 score 6688.16 - alt edge len 2477 erate 0.0336 score 2393.77 - absdiff 4294.39 percdiff 94.5699 tig 3 read 250405 pos 22569-31075 IS confused by 5' edge to read 270935 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 5016 erate 0.0404 score 4813.35 - absdiff 1775.13 percdiff 31.1377 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 287455 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 6358 erate 0.0386 score 6112.58 - absdiff 904.64 percdiff 13.7800 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 287457 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 6394 erate 0.0427 score 6120.98 - absdiff 896.25 percdiff 13.6434 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 327420 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 6364 erate 0.0566 score 6003.80 - absdiff 1013.43 percdiff 15.5660 tig 3 read 250405 pos 22569-31075 NOT confused by 5' edge to read 539919 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 2280 erate 0.0360 score 2197.92 - absdiff 4390.57 percdiff 99.9400 tig 3 read 250405 pos 22569-31075 NOT confused by 5' edge to read 644710 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 1414 erate 0.0683 score 1317.42 - absdiff 5271.06 percdiff 133.3449 tig 3 read 250405 pos 22569-31075 IS confused by 3' edge to read 691283 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 7268 erate 0.0437 score 6950.39 - absdiff 66.84 percdiff 0.9570 tig 3 read 250405 pos 22569-31075 NOT confused by 3' edge to read 706969 - best edge read 17199 len 7392 erate 0.0507 score 7017.23 - alt edge len 4787 erate 0.0725 score 4439.94 - absdiff 2577.28 percdiff 44.9899 tig 3 read 250405 pos 22569-31075 NOT confused by 5' edge to read 718181 - best edge read 653348 len 6904 erate 0.0457 score 6588.49 - alt edge len 3143 erate 0.0369 score 3027.02 - absdiff 3561.46 percdiff 74.0775 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 51480 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 868 erate 0.0492 score 825.29 - absdiff 6165.35 percdiff 157.7635 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 51481 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 867 erate 0.0707 score 805.70 - absdiff 6184.94 percdiff 158.6625 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 116666 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 769 erate 0.0431 score 735.86 - absdiff 6254.79 percdiff 161.9048 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 270935 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 4039 erate 0.0379 score 3885.92 - absdiff 3104.72 percdiff 57.0901 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 539919 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2943 erate 0.0262 score 2865.89 - absdiff 4124.75 percdiff 83.6957 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 644708 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2550 erate 0.0724 score 2365.38 - absdiff 4625.27 percdiff 98.8724 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 644709 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2477 erate 0.0664 score 2312.53 - absdiff 4678.12 percdiff 100.5704 tig 3 read 17199 pos 22659-31479 NOT confused by 5' edge to read 644710 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 2075 erate 0.0557 score 1959.42 - absdiff 5031.22 percdiff 112.4287 tig 3 read 17199 pos 22659-31479 IS confused by 5' edge to read 718181 - best edge read 250405 len 7364 erate 0.0507 score 6990.65 - alt edge len 5440 erate 0.0335 score 5257.76 - absdiff 1732.89 percdiff 28.2957 tig 3 read 653348 pos 22724-30089 IS confused by 3' edge to read 270935 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 5368 erate 0.0372 score 5168.31 - absdiff 1282.68 percdiff 22.0784 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 287455 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 4899 erate 0.0536 score 4636.41 - absdiff 1959.65 percdiff 34.8926 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 287457 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 4935 erate 0.0567 score 4655.19 - absdiff 1940.88 percdiff 34.5007 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 327420 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 4905 erate 0.0521 score 4649.45 - absdiff 1946.61 percdiff 34.6203 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 539919 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 4271 erate 0.0368 score 4113.83 - absdiff 2337.16 percdiff 44.2443 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 644706 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 534 erate 0.0571 score 503.51 - absdiff 5947.48 percdiff 171.0398 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 644708 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 587 erate 0.0554 score 554.48 - absdiff 5896.51 percdiff 168.3402 tig 3 read 653348 pos 22724-30089 IS confused by 5' edge to read 691283 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 5804 erate 0.0552 score 5483.62 - absdiff 1112.44 percdiff 18.4184 tig 3 read 653348 pos 22724-30089 NOT confused by 5' edge to read 706969 - best edge read 250405 len 6925 erate 0.0475 score 6596.06 - alt edge len 3297 erate 0.0528 score 3122.92 - absdiff 3473.14 percdiff 71.4714 tig 3 read 653348 pos 22724-30089 NOT confused by 3' edge to read 718181 - best edge read 563230 len 6825 erate 0.0548 score 6450.99 - alt edge len 3488 erate 0.0480 score 3320.58 - absdiff 3130.41 percdiff 64.0719 tig 3 read 472038 pos 23874-30403 IS confused by 5' edge to read 270935 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 5020 erate 0.0408 score 4815.18 - absdiff 1447.74 percdiff 26.1369 tig 3 read 472038 pos 23874-30403 NOT confused by 3' edge to read 506851 - best edge read 236069 len 3812 erate 0.0311 score 3693.45 - alt edge len 943 erate 0.0669 score 879.91 - absdiff 2813.53 percdiff 123.0401 tig 3 read 472038 pos 23874-30403 NOT confused by 3' edge to read 506855 - best edge read 236069 len 3812 erate 0.0311 score 3693.45 - alt edge len 887 erate 0.0576 score 835.91 - absdiff 2857.54 percdiff 126.1786 tig 3 read 472038 pos 23874-30403 NOT confused by 5' edge to read 539919 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 2278 erate 0.0347 score 2198.95 - absdiff 4063.97 percdiff 96.0536 tig 3 read 472038 pos 23874-30403 NOT confused by 5' edge to read 644710 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 1424 erate 0.0583 score 1340.98 - absdiff 4921.94 percdiff 129.4583 tig 3 read 472038 pos 23874-30403 IS confused by 5' edge to read 718181 - best edge read 17199 len 6394 erate 0.0205 score 6262.92 - alt edge len 4785 erate 0.0387 score 4599.82 - absdiff 1663.10 percdiff 30.6203 tig 3 read 665025 pos 31225-37509 NOT confused by 5' edge to read 141999 - best edge read 665027 len 6202 erate 0.0224 score 6063.08 - alt edge len 3729 erate 0.0402 score 3579.09 - absdiff 2483.98 percdiff 51.5233 tig 3 read 665025 pos 31225-37509 IS confused by 3' edge to read 161528 - best edge read 236071 len 1733 erate 0.0677 score 1615.68 - alt edge len 691 erate 0.0556 score 652.58 - absdiff 963.10 percdiff 84.9195 tig 3 read 665025 pos 31225-37509 IS confused by 3' edge to read 161529 - best edge read 236071 len 1733 erate 0.0677 score 1615.68 - alt edge len 688 erate 0.0680 score 641.22 - absdiff 974.46 percdiff 86.3541 tig 3 read 665025 pos 31225-37509 NOT confused by 5' edge to read 253404 - best edge read 665027 len 6202 erate 0.0224 score 6063.08 - alt edge len 2307 erate 0.0499 score 2191.88 - absdiff 3871.19 percdiff 93.7908 tig 3 read 665025 pos 31225-37509 NOT confused by 5' edge to read 294691 - best edge read 665027 len 6202 erate 0.0224 score 6063.08 - alt edge len 2554 erate 0.0437 score 2442.39 - absdiff 3620.68 percdiff 85.1378 tig 3 read 665027 pos 31242-37531 IS confused by 5' edge to read 141999 - best edge read 329056 len 5486 erate 0.0659 score 5124.47 - alt edge len 3734 erate 0.0412 score 3580.16 - absdiff 1544.31 percdiff 35.4826 tig 3 read 665027 pos 31242-37531 NOT confused by 3' edge to read 161528 - best edge read 665025 len 6170 erate 0.0224 score 6031.79 - alt edge len 687 erate 0.0572 score 647.70 - absdiff 5384.09 percdiff 161.2124 tig 3 read 665027 pos 31242-37531 NOT confused by 3' edge to read 161529 - best edge read 665025 len 6170 erate 0.0224 score 6031.79 - alt edge len 684 erate 0.0667 score 638.38 - absdiff 5393.41 percdiff 161.7175 tig 3 read 665027 pos 31242-37531 NOT confused by 5' edge to read 253404 - best edge read 329056 len 5486 erate 0.0659 score 5124.47 - alt edge len 2313 erate 0.0442 score 2210.77 - absdiff 2913.71 percdiff 79.4441 tig 3 read 665027 pos 31242-37531 NOT confused by 5' edge to read 294691 - best edge read 329056 len 5486 erate 0.0659 score 5124.47 - alt edge len 2561 erate 0.0476 score 2439.10 - absdiff 2685.38 percdiff 71.0082 tig 3 read 382743 pos 38544-43570 IS confused by 5' edge to read 329054 - best edge read 329056 len 1588 erate 0.0470 score 1513.36 - alt edge len 1570 erate 0.0463 score 1497.31 - absdiff 16.06 percdiff 1.0665 tig 3 read 382743 pos 38544-43570 IS confused by 5' edge to read 667648 - best edge read 329056 len 1588 erate 0.0470 score 1513.36 - alt edge len 583 erate 0.0421 score 558.46 - absdiff 954.91 percdiff 92.1806 saved region 1022:40142 - 26 best edges are potentially confused discard region 43598:44478 - no confusion in best edges break tig 3 into up to 3 pieces: 0 522 unique (length 522) 522 40642 repeat (length 40120) 40642 52165 unique (length 11523) Creating Unitig 113054 Creating Unitig 113055 Creating Unitig 113056 For tig 3 unique region 0 522 - 0/ 1 reads repeat/unique - unitig 113054 created. For tig 3 repeat region 522 40642 - 278/ 0 reads repeat/unique - unitig 113055 created. For tig 3 unique region 40642 52165 - 0/ 24 reads repeat/unique - unitig 113056 created. Annotating repeats in reads for tig 5/113047. Annotated with 364 overlaps. Scan reads to discard spanned repeats. discard region 0:9580 - contained in read 512517 0- 13080 discard region 24218:29804 - contained in read 500940 20538- 32656 thickest edges to the repeat regions: saved region 49121:58568 - closest read 55688 ( +186) 48935:58568 ( +0) (contained) saved region 49121:58568 - closest 5' read 55688 ( +186) 48935:58568 ( +0) saved region 49121:58568 - closest 3' read 55688 ( +186) 48935:58568 ( +0) search for confused edges: discard region 49121:58568 - no confusion in best edges Annotating repeats in reads for tig 6/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 24107:29394 - contained in read 713303 21358- 31008 thickest edges to the repeat regions: saved region 20042:22718 - closest 5' read 700761 ( +2511) 17531:22573 ( -145) saved region 20042:22718 - closest 3' read 482939 ( -483) 20525:27373 ( +4655) search for confused edges: tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 145088 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1323 erate 0.0615 score 1241.64 - absdiff 621.14 percdiff 40.0164 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 227639 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1477 erate 0.0678 score 1376.86 - absdiff 485.91 percdiff 29.9980 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 256025 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1215 erate 0.0684 score 1131.89 - absdiff 730.88 percdiff 48.8120 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 269046 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1094 erate 0.0659 score 1021.91 - absdiff 840.87 percdiff 58.2988 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 511541 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 942 erate 0.0733 score 872.95 - absdiff 989.82 percdiff 72.3626 tig 6 read 482939 pos 20525-27373 IS confused by 3' edge to read 567996 - best edge read 700761 len 2006 erate 0.0714 score 1862.77 - alt edge len 1438 erate 0.0697 score 1337.77 - absdiff 525.00 percdiff 32.8069 saved region 20042:22718 - 6 best edges are potentially confused break tig 6 into up to 3 pieces: 0 19542 unique (length 19542) 19542 23218 repeat (length 3676) 23218 62646 unique (length 39428) Creating Unitig 113057 Creating Unitig 113058 Creating Unitig 113059 For tig 6 unique region 0 19542 - 0/ 18 reads repeat/unique - unitig 113057 created. For tig 6 repeat region 19542 23218 - 4/ 0 reads repeat/unique - unitig 113059 created. For tig 6 unique region 23218 62646 - 0/ 67 reads repeat/unique - unitig 113058 created. Annotating repeats in reads for tig 7/113047. Annotated with 323 overlaps. Scan reads to discard spanned repeats. discard region 29161:30410 - contained in read 380812 22096- 35354 discard region 46134:49426 - contained in read 169327 45314- 50547 thickest edges to the repeat regions: saved region 12887:26832 - closest 5' read 587062 ( +236) 12651:20849 ( -5983) saved region 12887:26832 - closest 3' read 541837 ( -3059) 15946:27696 ( +864) saved region 30623:36782 - closest 5' read 703477 ( +1001) 29622:36776 ( -6) saved region 30623:36782 - closest 3' read 702416 ( -4191) 34814:36782 ( +0) search for confused edges: tig 7 read 587062 pos 12651-20849 NOT confused by 3' edge to read 410359 - best edge read 211689 len 7208 erate 0.0163 score 7090.51 - alt edge len 1681 erate 0.0732 score 1557.95 - absdiff 5532.56 percdiff 127.9432 tig 7 read 211689 pos 13470-23735 NOT confused by 3' edge to read 61970 - best edge read 587062 len 7194 erate 0.0163 score 7076.74 - alt edge len 537 erate 0.0281 score 521.91 - absdiff 6554.83 percdiff 172.5261 tig 7 read 211689 pos 13470-23735 NOT confused by 5' edge to read 190346 - best edge read 295407 len 9491 erate 0.0248 score 9255.62 - alt edge len 3264 erate 0.0413 score 3129.20 - absdiff 6126.43 percdiff 98.9344 tig 7 read 211689 pos 13470-23735 NOT confused by 5' edge to read 295570 - best edge read 295407 len 9491 erate 0.0248 score 9255.62 - alt edge len 2629 erate 0.0240 score 2565.90 - absdiff 6689.72 percdiff 113.1786 tig 7 read 295407 pos 14065-24527 NOT confused by 5' edge to read 190346 - best edge read 659233 len 9680 erate 0.0606 score 9093.39 - alt edge len 4035 erate 0.0517 score 3826.39 - absdiff 5267.00 percdiff 81.5339 tig 7 read 295407 pos 14065-24527 NOT confused by 5' edge to read 295570 - best edge read 659233 len 9680 erate 0.0606 score 9093.39 - alt edge len 3409 erate 0.0560 score 3218.10 - absdiff 5875.30 percdiff 95.4441 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 109876 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 6195 erate 0.0178 score 6084.73 - absdiff 3016.15 percdiff 39.7238 tig 7 read 659233 pos 14640-25504 NOT confused by 5' edge to read 190346 - best edge read 60547 len 10572 erate 0.0318 score 10235.81 - alt edge len 4989 erate 0.0425 score 4776.97 - absdiff 5458.84 percdiff 72.7226 tig 7 read 659233 pos 14640-25504 IS confused by 3' edge to read 275269 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 9492 erate 0.0338 score 9171.17 - absdiff 70.29 percdiff 0.7694 tig 7 read 659233 pos 14640-25504 NOT confused by 5' edge to read 295570 - best edge read 60547 len 10572 erate 0.0318 score 10235.81 - alt edge len 4351 erate 0.0329 score 4207.85 - absdiff 6027.96 percdiff 83.4686 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 299294 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 797 erate 0.0276 score 775.00 - absdiff 8325.87 percdiff 168.6103 tig 7 read 659233 pos 14640-25504 NOT confused by 5' edge to read 580301 - best edge read 60547 len 10572 erate 0.0318 score 10235.81 - alt edge len 1121 erate 0.0611 score 1052.51 - absdiff 9183.30 percdiff 162.7046 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 657576 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 5924 erate 0.0200 score 5805.52 - absdiff 3295.36 percdiff 44.2140 tig 7 read 659233 pos 14640-25504 NOT confused by 3' edge to read 657577 - best edge read 295407 len 9689 erate 0.0607 score 9100.88 - alt edge len 5837 erate 0.0201 score 5719.68 - absdiff 3381.20 percdiff 45.6285 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 109876 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 6112 erate 0.0319 score 5917.03 - absdiff 4249.07 percdiff 52.8389 tig 7 read 60547 pos 14736-25768 NOT confused by 3' edge to read 190346 - best edge read 60546 len 10780 erate 0.0232 score 10529.90 - alt edge len 5231 erate 0.0312 score 5067.79 - absdiff 5462.11 percdiff 70.0374 tig 7 read 60547 pos 14736-25768 IS confused by 5' edge to read 275269 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 9397 erate 0.0291 score 9123.55 - absdiff 1042.55 percdiff 10.8095 tig 7 read 60547 pos 14736-25768 NOT confused by 3' edge to read 295570 - best edge read 60546 len 10780 erate 0.0232 score 10529.90 - alt edge len 4585 erate 0.0419 score 4392.89 - absdiff 6137.02 percdiff 82.2502 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 299294 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 737 erate 0.0326 score 712.97 - absdiff 9453.13 percdiff 173.7855 tig 7 read 60547 pos 14736-25768 NOT confused by 3' edge to read 580301 - best edge read 60546 len 10780 erate 0.0232 score 10529.90 - alt edge len 1384 erate 0.0600 score 1300.96 - absdiff 9228.94 percdiff 156.0147 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 657576 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 5832 erate 0.0318 score 5646.54 - absdiff 4519.56 percdiff 57.1639 tig 7 read 60547 pos 14736-25768 NOT confused by 5' edge to read 657577 - best edge read 659233 len 10500 erate 0.0318 score 10166.10 - alt edge len 5748 erate 0.0343 score 5550.84 - absdiff 4615.26 percdiff 58.7297 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 109876 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 6106 erate 0.0344 score 5895.95 - absdiff 5132.28 percdiff 60.6502 tig 7 read 60544 pos 14754-26310 NOT confused by 5' edge to read 190346 - best edge read 60545 len 11283 erate 0.0183 score 11076.52 - alt edge len 5761 erate 0.0309 score 5582.99 - absdiff 5493.54 percdiff 65.9508 tig 7 read 60544 pos 14754-26310 IS confused by 3' edge to read 275269 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 9377 erate 0.0312 score 9084.44 - absdiff 1943.79 percdiff 19.3290 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 299294 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 709 erate 0.0579 score 667.95 - absdiff 10360.28 percdiff 177.1567 tig 7 read 60544 pos 14754-26310 NOT confused by 5' edge to read 580301 - best edge read 60545 len 11283 erate 0.0183 score 11076.52 - alt edge len 1925 erate 0.0464 score 1835.68 - absdiff 9240.84 percdiff 143.1335 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 657576 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 5820 erate 0.0361 score 5609.90 - absdiff 5418.33 percdiff 65.1315 tig 7 read 60544 pos 14754-26310 NOT confused by 3' edge to read 657577 - best edge read 60546 len 11251 erate 0.0198 score 11028.23 - alt edge len 5734 erate 0.0365 score 5524.71 - absdiff 5503.52 percdiff 66.4960 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 109876 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 6102 erate 0.0354 score 5885.99 - absdiff 4626.33 percdiff 56.4245 tig 7 read 60546 pos 14765-26261 NOT confused by 5' edge to read 190346 - best edge read 60544 len 11235 erate 0.0198 score 11012.55 - alt edge len 5701 erate 0.0346 score 5503.75 - absdiff 5508.80 percdiff 66.7075 tig 7 read 60546 pos 14765-26261 IS confused by 3' edge to read 275269 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 9366 erate 0.0348 score 9040.06 - absdiff 1472.26 percdiff 15.0596 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 299294 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 711 erate 0.0534 score 673.03 - absdiff 9839.29 percdiff 175.9316 tig 7 read 60546 pos 14765-26261 NOT confused by 5' edge to read 580301 - best edge read 60544 len 11235 erate 0.0198 score 11012.55 - alt edge len 1872 erate 0.0482 score 1781.77 - absdiff 9230.78 percdiff 144.2950 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 657576 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 5820 erate 0.0371 score 5604.08 - absdiff 4908.24 percdiff 60.9099 tig 7 read 60546 pos 14765-26261 NOT confused by 3' edge to read 657577 - best edge read 60547 len 10762 erate 0.0232 score 10512.32 - alt edge len 5733 erate 0.0372 score 5519.73 - absdiff 4992.59 percdiff 62.2826 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 109876 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 6068 erate 0.0345 score 5858.65 - absdiff 5231.61 percdiff 61.7339 tig 7 read 60545 pos 14780-26333 NOT confused by 3' edge to read 190346 - best edge read 541838 len 10130 erate 0.0332 score 9793.68 - alt edge len 5801 erate 0.0292 score 5631.61 - absdiff 4162.07 percdiff 53.9643 tig 7 read 60545 pos 14780-26333 IS confused by 5' edge to read 275269 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 9369 erate 0.0302 score 9086.06 - absdiff 2004.21 percdiff 19.8669 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 299294 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 694 erate 0.0534 score 656.94 - absdiff 10433.32 percdiff 177.6308 tig 7 read 60545 pos 14780-26333 NOT confused by 3' edge to read 580301 - best edge read 541838 len 10130 erate 0.0332 score 9793.68 - alt edge len 1935 erate 0.0483 score 1841.54 - absdiff 7952.14 percdiff 136.6909 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 657576 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 5783 erate 0.0344 score 5584.06 - absdiff 5506.20 percdiff 66.0440 tig 7 read 60545 pos 14780-26333 NOT confused by 5' edge to read 657577 - best edge read 60544 len 11297 erate 0.0183 score 11090.26 - alt edge len 5696 erate 0.0358 score 5492.08 - absdiff 5598.18 percdiff 67.5198 tig 7 read 541838 pos 15958-28450 NOT confused by 5' edge to read 109876 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 4878 erate 0.0211 score 4775.07 - absdiff 5051.48 percdiff 69.1906 tig 7 read 541838 pos 15958-28450 IS confused by 5' edge to read 275269 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 8201 erate 0.0346 score 7917.25 - absdiff 1909.31 percdiff 21.5209 tig 7 read 541838 pos 15958-28450 NOT confused by 5' edge to read 657576 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 4611 erate 0.0228 score 4505.87 - absdiff 5320.69 percdiff 74.2468 tig 7 read 541838 pos 15958-28450 NOT confused by 5' edge to read 657577 - best edge read 60545 len 10164 erate 0.0332 score 9826.56 - alt edge len 4523 erate 0.0232 score 4418.07 - absdiff 5408.49 percdiff 75.9373 tig 7 read 570053 pos 36012-42800 IS confused by 5' edge to read 109876 - best edge read 485805 len 727 erate 0.0550 score 687.01 - alt edge len 724 erate 0.0565 score 683.09 - absdiff 3.92 percdiff 0.5724 tig 7 read 570053 pos 36012-42800 IS confused by 5' edge to read 275269 - best edge read 485805 len 727 erate 0.0550 score 687.01 - alt edge len 722 erate 0.0511 score 685.11 - absdiff 1.91 percdiff 0.2783 saved region 12887:26832 - 6 best edges are potentially confused saved region 30623:36782 - 2 best edges are potentially confused break tig 7 into up to 5 pieces: 0 12387 unique (length 12387) 12387 27332 repeat (length 14945) 27332 30123 unique (length 2791) 30123 37282 repeat (length 7159) 37282 52027 unique (length 14745) Creating Unitig 113060 Creating Unitig 113061 Creating Unitig 113062 Creating Unitig 113063 Creating Unitig 113064 For tig 7 unique region 0 12387 - 0/ 6 reads repeat/unique - unitig 113060 created. For tig 7 repeat region 12387 27332 - 116/ 0 reads repeat/unique - unitig 113061 created. For tig 7 unique region 27332 30123 - 0/ 85 reads repeat/unique - unitig 113062 created. For tig 7 repeat region 30123 37282 - 24/ 0 reads repeat/unique - unitig 113063 created. For tig 7 unique region 37282 52027 - 0/ 17 reads repeat/unique - unitig 113064 created. Annotating repeats in reads for tig 8/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 33690:32997 - contained in read 325308 25561- 42540 discard region 34605:35478 - contained in read 325308 25561- 42540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10/113047. Annotated with 538 overlaps. Scan reads to discard spanned repeats. discard region 53305:57784 - contained in read 700347 50856- 59122 thickest edges to the repeat regions: saved region 4869:20097 - closest 5' read 518374 ( +4869) 0:12623 ( -7474) saved region 4869:20097 - closest 3' read 215695 ( -5792) 10661:20592 ( +495) saved region 20856:33446 - closest 5' read 156595 ( +2021) 18835:33390 ( -56) saved region 20856:33446 - closest 3' read 196075 ( -2883) 23739:33446 ( +0) saved region 33442:51135 - closest 5' read 368659 ( +1989) 31453:38586 (-12549) saved region 33442:51135 - closest 3' read 177558 (-11020) 44462:51135 ( +0) search for confused edges: tig 10 read 368659 pos 31453-38586 NOT confused by 3' edge to read 679092 - best edge read 274132 len 4351 erate 0.0291 score 4224.39 - alt edge len 1623 erate 0.0385 score 1560.51 - absdiff 2663.87 percdiff 92.0974 tig 10 read 274132 pos 34138-42902 NOT confused by 5' edge to read 544640 - best edge read 368659 len 4392 erate 0.0291 score 4264.19 - alt edge len 1732 erate 0.0313 score 1677.79 - absdiff 2586.40 percdiff 87.0553 tig 10 read 274132 pos 34138-42902 NOT confused by 5' edge to read 594004 - best edge read 368659 len 4392 erate 0.0291 score 4264.19 - alt edge len 1063 erate 0.0287 score 1032.49 - absdiff 3231.70 percdiff 122.0273 tig 10 read 274132 pos 34138-42902 IS confused by 5' edge to read 649997 - best edge read 368659 len 4392 erate 0.0291 score 4264.19 - alt edge len 2309 erate 0.0282 score 2243.89 - absdiff 2020.31 percdiff 62.0861 tig 10 read 438982 pos 37089-47192 NOT confused by 3' edge to read 547485 - best edge read 192783 len 9844 erate 0.0568 score 9284.86 - alt edge len 4028 erate 0.0179 score 3955.90 - absdiff 5328.96 percdiff 80.4933 tig 10 read 438982 pos 37089-47192 NOT confused by 3' edge to read 547487 - best edge read 192783 len 9844 erate 0.0568 score 9284.86 - alt edge len 4029 erate 0.0246 score 3929.89 - absdiff 5354.97 percdiff 81.0454 tig 10 read 192783 pos 37562-47768 NOT confused by 3' edge to read 547485 - best edge read 637664 len 7443 erate 0.0145 score 7335.08 - alt edge len 4628 erate 0.0175 score 4547.01 - absdiff 2788.07 percdiff 46.9289 tig 10 read 192783 pos 37562-47768 NOT confused by 3' edge to read 547487 - best edge read 637664 len 7443 erate 0.0145 score 7335.08 - alt edge len 4629 erate 0.0243 score 4516.52 - absdiff 2818.56 percdiff 47.5643 tig 10 read 637664 pos 40229-48721 NOT confused by 3' edge to read 547485 - best edge read 262872 len 7836 erate 0.0165 score 7706.71 - alt edge len 5543 erate 0.0121 score 5475.93 - absdiff 2230.78 percdiff 33.8442 tig 10 read 637664 pos 40229-48721 NOT confused by 3' edge to read 547487 - best edge read 262872 len 7836 erate 0.0165 score 7706.71 - alt edge len 5544 erate 0.0174 score 5447.53 - absdiff 2259.17 percdiff 34.3489 tig 10 read 262872 pos 40794-49677 IS confused by 3' edge to read 547485 - best edge read 373241 len 7829 erate 0.0255 score 7629.36 - alt edge len 6494 erate 0.0356 score 6262.81 - absdiff 1366.55 percdiff 19.6736 tig 10 read 262872 pos 40794-49677 IS confused by 3' edge to read 547487 - best edge read 373241 len 7829 erate 0.0255 score 7629.36 - alt edge len 6495 erate 0.0419 score 6222.86 - absdiff 1406.50 percdiff 20.3072 tig 10 read 373241 pos 41747-49662 IS confused by 5' edge to read 547485 - best edge read 443260 len 7737 erate 0.0149 score 7621.72 - alt edge len 6471 erate 0.0119 score 6394.00 - absdiff 1227.72 percdiff 17.5192 tig 10 read 373241 pos 41747-49662 IS confused by 5' edge to read 547487 - best edge read 443260 len 7737 erate 0.0149 score 7621.72 - alt edge len 6472 erate 0.0170 score 6361.98 - absdiff 1259.74 percdiff 18.0173 tig 10 read 443260 pos 41808-50536 IS confused by 5' edge to read 547485 - best edge read 145176 len 8216 erate 0.0324 score 7949.80 - alt edge len 7350 erate 0.0300 score 7129.50 - absdiff 820.30 percdiff 10.8798 tig 10 read 443260 pos 41808-50536 IS confused by 5' edge to read 547487 - best edge read 145176 len 8216 erate 0.0324 score 7949.80 - alt edge len 7351 erate 0.0369 score 7079.75 - absdiff 870.05 percdiff 11.5779 discard region 4869:20097 - no confusion in best edges discard region 20856:33446 - no confusion in best edges saved region 33442:51135 - 7 best edges are potentially confused break tig 10 into up to 3 pieces: 0 32942 unique (length 32942) 32942 51635 repeat (length 18693) 51635 60979 unique (length 9344) Creating Unitig 113065 Creating Unitig 113066 Creating Unitig 113067 For tig 10 unique region 0 32942 - 0/ 307 reads repeat/unique - unitig 113065 created. For tig 10 repeat region 32942 51635 - 100/ 0 reads repeat/unique - unitig 113066 created. For tig 10 unique region 51635 60979 - 0/ 80 reads repeat/unique - unitig 113067 created. Annotating repeats in reads for tig 11/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 10533:11566 - contained in read 409664 6983- 12658 discard region 18422:19411 - contained in read 610998 13962- 22934 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 40064:47360 - contained in read 125621 39089- 47360 thickest edges to the repeat regions: saved region 789:8300 - closest read 95721 ( +789) 0:8347 ( +47) (contained) saved region 789:8300 - closest read 95723 ( +776) 13:8345 ( +45) (contained) saved region 789:8300 - closest read 95722 ( +746) 43:8331 ( +31) (contained) saved region 789:8300 - closest read 45065 ( +0) 789:14865 ( +6565) (contained) saved region 789:8300 - closest 5' read 45065 ( +0) 789:14865 ( +6565) saved region 789:8300 - closest 3' read 95721 ( +789) 0:8347 ( +47) saved region 31250:32249 - closest read 513861 ( +4145) 27105:32468 ( +219) (contained) saved region 31250:32249 - closest read 178500 ( +4137) 27113:32249 ( +0) (contained) saved region 31250:32249 - closest 5' read 513861 ( +4145) 27105:32468 ( +219) saved region 31250:32249 - closest 3' read 513861 ( +4145) 27105:32468 ( +219) search for confused edges: discard region 789:8300 - no confusion in best edges discard region 31250:32249 - no confusion in best edges Annotating repeats in reads for tig 15/113047. Annotated with 243 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:27825 - closest 5' read 275648 ( +0) 0:11064 (-16761) saved region 0:27825 - closest 3' read 330971 (-18066) 18066:27825 ( +0) search for confused edges: tig 15 read 275648 pos 0-11064 NOT confused by 3' edge to read 657005 - best edge read 467587 len 9311 erate 0.0304 score 9027.95 - alt edge len 599 erate 0.0742 score 554.55 - absdiff 8473.39 percdiff 176.8514 tig 15 read 467587 pos 1681-12041 NOT confused by 3' edge to read 330971 - best edge read 275648 len 9267 erate 0.0304 score 8985.28 - alt edge len 5511 erate 0.0499 score 5236.00 - absdiff 3749.28 percdiff 52.7278 tig 15 read 467587 pos 1681-12041 NOT confused by 5' edge to read 514862 - best edge read 467588 len 10243 erate 0.0190 score 10048.38 - alt edge len 4390 erate 0.0353 score 4235.03 - absdiff 5813.35 percdiff 81.4000 tig 15 read 467587 pos 1681-12041 NOT confused by 5' edge to read 657005 - best edge read 467588 len 10243 erate 0.0190 score 10048.38 - alt edge len 1568 erate 0.0319 score 1517.98 - absdiff 8530.40 percdiff 147.5036 tig 15 read 467588 pos 1709-12042 NOT confused by 5' edge to read 330971 - best edge read 467587 len 10200 erate 0.0190 score 10006.20 - alt edge len 5485 erate 0.0543 score 5187.16 - absdiff 4819.04 percdiff 63.4361 tig 15 read 467588 pos 1709-12042 NOT confused by 3' edge to read 514862 - best edge read 467586 len 10179 erate 0.0215 score 9960.15 - alt edge len 4385 erate 0.0397 score 4210.92 - absdiff 5749.24 percdiff 81.1405 tig 15 read 467588 pos 1709-12042 NOT confused by 3' edge to read 657005 - best edge read 467586 len 10179 erate 0.0215 score 9960.15 - alt edge len 1578 erate 0.0306 score 1529.71 - absdiff 8430.44 percdiff 146.7456 tig 15 read 467586 pos 1739-12056 NOT confused by 5' edge to read 330971 - best edge read 467588 len 10195 erate 0.0215 score 9975.81 - alt edge len 5455 erate 0.0541 score 5159.88 - absdiff 4815.92 percdiff 63.6366 tig 15 read 467586 pos 1739-12056 NOT confused by 3' edge to read 514862 - best edge read 73634 len 6596 erate 0.0234 score 6441.65 - alt edge len 4408 erate 0.0392 score 4235.21 - absdiff 2206.45 percdiff 41.3314 tig 15 read 467586 pos 1739-12056 NOT confused by 3' edge to read 657005 - best edge read 73634 len 6596 erate 0.0234 score 6441.65 - alt edge len 1592 erate 0.0349 score 1536.44 - absdiff 4905.21 percdiff 122.9671 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 52386 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 796 erate 0.0594 score 748.72 - absdiff 5709.54 percdiff 158.4448 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 52387 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 712 erate 0.0537 score 673.77 - absdiff 5784.49 percdiff 162.2118 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 52388 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 780 erate 0.0569 score 735.62 - absdiff 5722.64 percdiff 159.0975 tig 15 read 73634 pos 5376-12154 NOT confused by 3' edge to read 379650 - best edge read 467586 len 6613 erate 0.0234 score 6458.26 - alt edge len 1478 erate 0.0550 score 1396.71 - absdiff 5061.55 percdiff 128.8751 tig 15 read 73634 pos 5376-12154 NOT confused by 5' edge to read 514862 - best edge read 73636 len 6701 erate 0.0231 score 6546.21 - alt edge len 4505 erate 0.0463 score 4296.42 - absdiff 2249.79 percdiff 41.4990 tig 15 read 73634 pos 5376-12154 NOT confused by 5' edge to read 657005 - best edge read 73636 len 6701 erate 0.0231 score 6546.21 - alt edge len 1684 erate 0.0449 score 1608.39 - absdiff 4937.82 percdiff 121.1052 tig 15 read 73637 pos 5384-12183 NOT confused by 5' edge to read 379650 - best edge read 73636 len 6723 erate 0.0343 score 6492.40 - alt edge len 1470 erate 0.0597 score 1382.24 - absdiff 5110.16 percdiff 129.7877 tig 15 read 73637 pos 5384-12183 IS confused by 3' edge to read 514862 - best edge read 482710 len 6337 erate 0.0413 score 6075.28 - alt edge len 4542 erate 0.0696 score 4225.88 - absdiff 1849.41 percdiff 35.9067 tig 15 read 73637 pos 5384-12183 NOT confused by 3' edge to read 657005 - best edge read 482710 len 6337 erate 0.0413 score 6075.28 - alt edge len 1716 erate 0.0578 score 1616.82 - absdiff 4458.47 percdiff 115.9233 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 52386 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 792 erate 0.0520 score 750.82 - absdiff 5787.58 percdiff 158.7985 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 52387 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 708 erate 0.0471 score 674.65 - absdiff 5863.74 percdiff 162.5871 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 52388 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 776 erate 0.0522 score 735.49 - absdiff 5802.90 percdiff 159.5543 tig 15 read 73636 pos 5385-12171 NOT confused by 3' edge to read 379650 - best edge read 73634 len 6693 erate 0.0231 score 6538.39 - alt edge len 1469 erate 0.0519 score 1392.76 - absdiff 5145.63 percdiff 129.7575 tig 15 read 73636 pos 5385-12171 NOT confused by 5' edge to read 514862 - best edge read 73637 len 6710 erate 0.0343 score 6479.85 - alt edge len 4518 erate 0.0377 score 4347.67 - absdiff 2132.18 percdiff 39.3844 tig 15 read 73636 pos 5385-12171 NOT confused by 5' edge to read 657005 - best edge read 73637 len 6710 erate 0.0343 score 6479.85 - alt edge len 1702 erate 0.0361 score 1640.56 - absdiff 4839.29 percdiff 119.1884 tig 15 read 482710 pos 5796-14281 NOT confused by 5' edge to read 330971 - best edge read 73637 len 6338 erate 0.0413 score 6076.24 - alt edge len 1455 erate 0.0637 score 1362.32 - absdiff 4713.92 percdiff 126.7430 tig 15 read 482710 pos 5796-14281 NOT confused by 5' edge to read 379650 - best edge read 73637 len 6338 erate 0.0413 score 6076.24 - alt edge len 1078 erate 0.0381 score 1036.93 - absdiff 5039.31 percdiff 141.6897 tig 15 read 404540 pos 5968-20404 NOT confused by 5' edge to read 379650 - best edge read 482710 len 8279 erate 0.0210 score 8105.14 - alt edge len 979 erate 0.0431 score 936.81 - absdiff 7168.34 percdiff 158.5574 saved region 0:27825 - 1 best edges are potentially confused Annotating repeats in reads for tig 20/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6594:3677 - contained in read 202548 0- 6511 discard region 6594:3799 - contained in read 202548 0- 6511 discard region 6594:4905 - contained in read 202548 0- 6511 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21/113047. Annotated with 523 overlaps. Scan reads to discard spanned repeats. discard region 23685:24808 - contained in read 230236 20572- 28520 thickest edges to the repeat regions: saved region 25079:33062 - closest 5' read 577897 ( +2817) 22262:32876 ( -186) saved region 25079:33062 - closest 3' read 659105 ( -3704) 28783:34699 ( +1637) saved region 47462:49177 - closest 5' read 695196 ( +2791) 44671:48900 ( -277) saved region 47462:49177 - closest 3' read 220012 ( -55) 47517:51036 ( +1859) search for confused edges: tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 38946 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1218 erate 0.0642 score 1139.80 - absdiff 1785.21 percdiff 87.8372 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 38947 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1222 erate 0.0621 score 1146.11 - absdiff 1778.90 percdiff 87.3911 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 107874 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2609 erate 0.0556 score 2463.94 - absdiff 461.08 percdiff 17.1119 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 426493 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1684 erate 0.0506 score 1598.79 - absdiff 1326.23 percdiff 58.6332 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 426494 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1669 erate 0.0557 score 1576.04 - absdiff 1348.98 percdiff 59.9406 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 603098 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2628 erate 0.0606 score 2468.74 - absdiff 456.27 percdiff 16.9185 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 622511 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2639 erate 0.0542 score 2495.97 - absdiff 429.05 percdiff 15.8292 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 622512 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 2674 erate 0.0419 score 2561.96 - absdiff 363.06 percdiff 13.2334 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 642771 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1064 erate 0.0623 score 997.71 - absdiff 1927.30 percdiff 98.2634 tig 21 read 577897 pos 22262-32876 IS confused by 3' edge to read 642772 - best edge read 550777 len 3059 erate 0.0438 score 2925.02 - alt edge len 1057 erate 0.0567 score 997.07 - absdiff 1927.95 percdiff 98.3124 tig 21 read 695195 pos 43637-48898 IS confused by 3' edge to read 133949 - best edge read 220012 len 1402 erate 0.0680 score 1306.66 - alt edge len 1337 erate 0.0682 score 1245.82 - absdiff 60.85 percdiff 4.7677 tig 21 read 695195 pos 43637-48898 IS confused by 3' edge to read 311428 - best edge read 220012 len 1402 erate 0.0680 score 1306.66 - alt edge len 633 erate 0.0488 score 602.11 - absdiff 704.55 percdiff 73.8227 tig 21 read 695195 pos 43637-48898 IS confused by 3' edge to read 591265 - best edge read 220012 len 1402 erate 0.0680 score 1306.66 - alt edge len 658 erate 0.0592 score 619.05 - absdiff 687.62 percdiff 71.4144 saved region 25079:33062 - 10 best edges are potentially confused saved region 47462:49177 - 3 best edges are potentially confused break tig 21 into up to 5 pieces: 0 24579 unique (length 24579) 24579 33562 repeat (length 8983) 33562 46962 unique (length 13400) 46962 49677 repeat (length 2715) 49677 51036 unique (length 1359) Creating Unitig 113068 Creating Unitig 113069 Creating Unitig 113070 Creating Unitig 113071 For tig 21 unique region 0 24579 - 0/ 42 reads repeat/unique - unitig 113068 created. For tig 21 repeat region 24579 33562 - 13/ 0 reads repeat/unique - unitig 113069 created. For tig 21 unique region 33562 46962 - 0/ 16 reads repeat/unique - unitig 113070 created. For tig 21 repeat region 46962 49677 - 0/ 0 repeat/unique reads - no new unitig created. For tig 21 unique region 49677 51036 - 0/ 3 reads repeat/unique - unitig 113071 created. Annotating repeats in reads for tig 23/113047. Annotated with 3085 overlaps. Scan reads to discard spanned repeats. discard region 42228:40743 - contained in read 516397 36996- 45081 thickest edges to the repeat regions: saved region 5668:39210 - closest 5' read 692155 ( +0) 5668:16182 (-23028) saved region 5668:39210 - closest 3' read 247879 (-24346) 30014:39210 ( +0) saved region 44484:45181 - closest 5' read 516394 ( +7452) 37032:45162 ( -19) saved region 44484:45181 - closest 3' read 615225 ( -141) 44625:50449 ( +5268) search for confused edges: tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 35386 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1836 erate 0.0586 score 1728.41 - absdiff 4906.38 percdiff 117.3326 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 35387 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1834 erate 0.0589 score 1725.98 - absdiff 4908.81 percdiff 117.4250 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 231909 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1591 erate 0.0621 score 1492.20 - absdiff 5142.59 percdiff 126.5559 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 231910 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1604 erate 0.0700 score 1491.72 - absdiff 5143.07 percdiff 126.5751 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 489155 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1819 erate 0.0583 score 1712.95 - absdiff 4921.84 percdiff 117.9202 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 600399 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 1729 erate 0.0721 score 1604.34 - absdiff 5030.45 percdiff 122.1112 tig 23 read 692155 pos 5668-16182 NOT confused by 3' edge to read 677214 - best edge read 464866 len 7093 erate 0.0646 score 6634.79 - alt edge len 2571 erate 0.0526 score 2435.77 - absdiff 4199.03 percdiff 92.5859 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 109123 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1863 erate 0.0625 score 1746.56 - absdiff 4868.59 percdiff 116.4495 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 109124 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1871 erate 0.0553 score 1767.53 - absdiff 4847.62 percdiff 115.6578 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 221189 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1532 erate 0.0647 score 1432.88 - absdiff 5182.27 percdiff 128.7836 tig 23 read 464866 pos 6327-20337 NOT confused by 3' edge to read 247879 - best edge read 464864 len 10434 erate 0.0280 score 10141.85 - alt edge len 6398 erate 0.0721 score 5936.70 - absdiff 4205.14 percdiff 52.3075 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 323775 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 3076 erate 0.0440 score 2940.66 - absdiff 3674.49 percdiff 76.9060 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 323778 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 3096 erate 0.0440 score 2959.78 - absdiff 3655.37 percdiff 76.3530 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 323779 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 3077 erate 0.0433 score 2943.77 - absdiff 3671.38 percdiff 76.8159 tig 23 read 464866 pos 6327-20337 NOT confused by 3' edge to read 489155 - best edge read 464864 len 10434 erate 0.0280 score 10141.85 - alt edge len 4769 erate 0.0557 score 4503.37 - absdiff 5638.48 percdiff 77.0010 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 600399 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 2580 erate 0.0723 score 2393.47 - absdiff 4221.68 percdiff 93.7255 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 635145 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 4545 erate 0.0679 score 4236.39 - absdiff 2378.75 percdiff 43.8418 tig 23 read 464866 pos 6327-20337 NOT confused by 3' edge to read 677214 - best edge read 464864 len 10434 erate 0.0280 score 10141.85 - alt edge len 1929 erate 0.0653 score 1803.04 - absdiff 8338.81 percdiff 139.6215 tig 23 read 464866 pos 6327-20337 NOT confused by 5' edge to read 685153 - best edge read 692155 len 7072 erate 0.0646 score 6615.15 - alt edge len 1511 erate 0.0531 score 1430.77 - absdiff 5184.38 percdiff 128.8699 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 247879 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 2247 erate 0.0573 score 2118.25 - absdiff 4656.84 percdiff 104.7265 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 372708 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 2294 erate 0.0728 score 2127.00 - absdiff 4648.09 percdiff 104.4270 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 615224 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 537 erate 0.0678 score 500.59 - absdiff 6274.50 percdiff 172.4786 tig 23 read 447228 pos 6656-13818 NOT confused by 3' edge to read 615225 - best edge read 447227 len 7015 erate 0.0342 score 6775.09 - alt edge len 533 erate 0.0675 score 497.02 - absdiff 6278.06 percdiff 172.6614 tig 23 read 506396 pos 7535-15123 IS confused by 3' edge to read 28114 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 2484 erate 0.0543 score 2349.12 - absdiff 1193.49 percdiff 40.5141 tig 23 read 506396 pos 7535-15123 IS confused by 3' edge to read 28117 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 2455 erate 0.0617 score 2303.53 - absdiff 1239.08 percdiff 42.3898 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 34339 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1157 erate 0.0693 score 1076.82 - absdiff 2465.79 percdiff 106.7573 tig 23 read 506396 pos 7535-15123 NOT confused by 5' edge to read 247879 - best edge read 692155 len 7290 erate 0.0440 score 6969.24 - alt edge len 2263 erate 0.0512 score 2147.13 - absdiff 4822.11 percdiff 105.7900 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 372708 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1121 erate 0.0672 score 1045.67 - absdiff 2496.94 percdiff 108.8400 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 464241 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1097 erate 0.0671 score 1023.39 - absdiff 2519.22 percdiff 110.3468 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 464242 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1098 erate 0.0699 score 1021.25 - absdiff 2521.36 percdiff 110.4924 tig 23 read 506396 pos 7535-15123 NOT confused by 5' edge to read 677214 - best edge read 692155 len 7290 erate 0.0440 score 6969.24 - alt edge len 1385 erate 0.0437 score 1324.48 - absdiff 5644.76 percdiff 136.1215 tig 23 read 506396 pos 7535-15123 NOT confused by 3' edge to read 691345 - best edge read 447227 len 3815 erate 0.0714 score 3542.61 - alt edge len 1050 erate 0.0600 score 987.00 - absdiff 2555.61 percdiff 112.8402 tig 23 read 464864 pos 7605-19059 NOT confused by 5' edge to read 28114 - best edge read 464866 len 10441 erate 0.0280 score 10148.65 - alt edge len 1287 erate 0.0539 score 1217.63 - absdiff 8931.02 percdiff 157.1494 tig 23 read 464864 pos 7605-19059 NOT confused by 5' edge to read 28117 - best edge read 464866 len 10441 erate 0.0280 score 10148.65 - alt edge len 1257 erate 0.0653 score 1174.92 - absdiff 8973.73 percdiff 158.4966 tig 23 read 464864 pos 7605-19059 NOT confused by 3' edge to read 34339 - best edge read 464865 len 10944 erate 0.0296 score 10620.06 - alt edge len 1033 erate 0.0691 score 961.62 - absdiff 9658.44 percdiff 166.7882 tig 23 read 464864 pos 7605-19059 NOT confused by 3' edge to read 35386 - best edge read 464865 len 10944 erate 0.0296 score 10620.06 - alt edge len 1967 erate 0.0722 score 1824.98 - absdiff 8795.08 percdiff 141.3427 tig 23 read 464864 pos 7605-19059 NOT confused by 5' edge to read 489155 - best edge read 464866 len 10441 erate 0.0280 score 10148.65 - alt edge len 3441 erate 0.0569 score 3245.21 - absdiff 6903.44 percdiff 103.0837 tig 23 read 464864 pos 7605-19059 NOT confused by 3' edge to read 677214 - best edge read 464865 len 10944 erate 0.0296 score 10620.06 - alt edge len 2705 erate 0.0555 score 2554.87 - absdiff 8065.19 percdiff 122.4323 tig 23 read 447227 pos 7791-14995 IS confused by 3' edge to read 247879 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 2259 erate 0.0552 score 2134.30 - absdiff 1407.90 percdiff 49.6044 tig 23 read 447227 pos 7791-14995 NOT confused by 5' edge to read 373858 - best edge read 447228 len 7013 erate 0.0342 score 6773.16 - alt edge len 708 erate 0.0710 score 657.73 - absdiff 6115.42 percdiff 164.5947 tig 23 read 447227 pos 7791-14995 NOT confused by 5' edge to read 575114 - best edge read 447228 len 7013 erate 0.0342 score 6773.16 - alt edge len 671 erate 0.0586 score 631.68 - absdiff 6141.48 percdiff 165.8775 tig 23 read 447227 pos 7791-14995 NOT confused by 3' edge to read 615224 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 538 erate 0.0688 score 500.99 - absdiff 3041.22 percdiff 150.4366 tig 23 read 447227 pos 7791-14995 NOT confused by 3' edge to read 615225 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 535 erate 0.0748 score 494.98 - absdiff 3047.22 percdiff 150.9577 tig 23 read 447227 pos 7791-14995 NOT confused by 5' edge to read 645307 - best edge read 447228 len 7013 erate 0.0342 score 6773.16 - alt edge len 579 erate 0.0557 score 546.75 - absdiff 6226.41 percdiff 170.1226 tig 23 read 447227 pos 7791-14995 NOT confused by 3' edge to read 677214 - best edge read 506396 len 3784 erate 0.0639 score 3542.20 - alt edge len 1379 erate 0.0666 score 1287.16 - absdiff 2255.04 percdiff 93.3889 tig 23 read 464865 pos 8076-19385 IS confused by 5' edge to read 247879 - best edge read 519267 len 7214 erate 0.0495 score 6856.91 - alt edge len 5533 erate 0.0682 score 5155.65 - absdiff 1701.26 percdiff 28.3247 tig 23 read 464865 pos 8076-19385 NOT confused by 5' edge to read 489155 - best edge read 519267 len 7214 erate 0.0495 score 6856.91 - alt edge len 3895 erate 0.0476 score 3709.60 - absdiff 3147.31 percdiff 59.5714 tig 23 read 464865 pos 8076-19385 NOT confused by 5' edge to read 677214 - best edge read 519267 len 7214 erate 0.0495 score 6856.91 - alt edge len 2859 erate 0.0485 score 2720.34 - absdiff 4136.57 percdiff 86.3833 tig 23 read 54638 pos 8112-13942 IS confused by 3' edge to read 34339 - best edge read 180946 len 2614 erate 0.0693 score 2432.85 - alt edge len 2238 erate 0.0630 score 2097.01 - absdiff 335.84 percdiff 14.8280 tig 23 read 54638 pos 8112-13942 NOT confused by 5' edge to read 43102 - best edge read 54637 len 5696 erate 0.0340 score 5502.34 - alt edge len 1086 erate 0.0427 score 1039.63 - absdiff 4462.71 percdiff 136.4333 tig 23 read 54638 pos 8112-13942 NOT confused by 5' edge to read 362081 - best edge read 54637 len 5696 erate 0.0340 score 5502.34 - alt edge len 764 erate 0.0468 score 728.24 - absdiff 4774.09 percdiff 153.2471 tig 23 read 54638 pos 8112-13942 NOT confused by 5' edge to read 600399 - best edge read 54637 len 5696 erate 0.0340 score 5502.34 - alt edge len 858 erate 0.0562 score 809.78 - absdiff 4692.56 percdiff 148.6841 tig 23 read 54638 pos 8112-13942 IS confused by 3' edge to read 645307 - best edge read 180946 len 2614 erate 0.0693 score 2432.85 - alt edge len 692 erate 0.0350 score 667.78 - absdiff 1765.07 percdiff 113.8523 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 34339 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 2180 erate 0.0597 score 2049.85 - absdiff 3534.60 percdiff 92.5978 tig 23 read 54635 pos 8170-14133 IS confused by 3' edge to read 43102 - best edge read 447228 len 1747 erate 0.0650 score 1633.45 - alt edge len 1270 erate 0.0505 score 1205.87 - absdiff 427.58 percdiff 30.1186 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 109124 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 767 erate 0.0678 score 715.00 - absdiff 4869.45 percdiff 154.5994 tig 23 read 54635 pos 8170-14133 IS confused by 3' edge to read 362081 - best edge read 447228 len 1747 erate 0.0650 score 1633.45 - alt edge len 955 erate 0.0432 score 913.74 - absdiff 719.70 percdiff 56.5094 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 373858 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 756 erate 0.0741 score 699.98 - absdiff 4884.47 percdiff 155.4467 tig 23 read 54635 pos 8170-14133 IS confused by 3' edge to read 600399 - best edge read 447228 len 1747 erate 0.0650 score 1633.45 - alt edge len 1044 erate 0.0690 score 971.96 - absdiff 661.48 percdiff 50.7775 tig 23 read 54635 pos 8170-14133 NOT confused by 5' edge to read 645307 - best edge read 54637 len 5793 erate 0.0360 score 5584.45 - alt edge len 645 erate 0.0343 score 622.88 - absdiff 4961.58 percdiff 159.8619 tig 23 read 54637 pos 9302-15292 NOT confused by 5' edge to read 34339 - best edge read 54638 len 5665 erate 0.0340 score 5472.39 - alt edge len 2206 erate 0.0621 score 2069.01 - absdiff 3403.38 percdiff 90.2587 tig 23 read 54637 pos 9302-15292 NOT confused by 3' edge to read 43102 - best edge read 54635 len 5813 erate 0.0360 score 5603.73 - alt edge len 1273 erate 0.0544 score 1203.75 - absdiff 4399.98 percdiff 129.2691 tig 23 read 54637 pos 9302-15292 NOT confused by 3' edge to read 362081 - best edge read 54635 len 5813 erate 0.0360 score 5603.73 - alt edge len 953 erate 0.0612 score 894.68 - absdiff 4709.06 percdiff 144.9295 tig 23 read 54637 pos 9302-15292 NOT confused by 5' edge to read 645307 - best edge read 54638 len 5665 erate 0.0340 score 5472.39 - alt edge len 683 erate 0.0265 score 664.90 - absdiff 4807.49 percdiff 156.6649 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 43102 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 586 erate 0.0563 score 553.01 - absdiff 6404.65 percdiff 170.5481 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 105585 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 606 erate 0.0495 score 576.00 - absdiff 6381.66 percdiff 169.4171 tig 23 read 519267 pos 12263-21382 IS confused by 5' edge to read 109123 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 5316 erate 0.0392 score 5107.61 - absdiff 1850.05 percdiff 30.6673 tig 23 read 519267 pos 12263-21382 IS confused by 5' edge to read 109124 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 5322 erate 0.0379 score 5120.30 - absdiff 1837.36 percdiff 30.4251 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 221189 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1363 erate 0.0661 score 1272.91 - absdiff 5684.75 percdiff 138.1376 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 229783 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 3043 erate 0.0532 score 2881.11 - absdiff 4076.55 percdiff 82.8670 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 323775 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 2875 erate 0.0407 score 2757.99 - absdiff 4199.67 percdiff 86.4517 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 323778 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1107 erate 0.0361 score 1067.04 - absdiff 5890.62 percdiff 146.8123 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 323779 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1088 erate 0.0322 score 1052.97 - absdiff 5904.69 percdiff 147.4215 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 337500 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1686 erate 0.0593 score 1586.02 - absdiff 5371.64 percdiff 125.7453 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 373858 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1676 erate 0.0573 score 1579.97 - absdiff 5377.69 percdiff 125.9764 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 489155 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1248 erate 0.0521 score 1182.98 - absdiff 5774.68 percdiff 141.8729 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 525367 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1011 erate 0.0437 score 966.82 - absdiff 5990.84 percdiff 151.1983 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 525368 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1003 erate 0.0460 score 956.86 - absdiff 6000.80 percdiff 151.6402 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 525369 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1010 erate 0.0419 score 967.68 - absdiff 5989.98 percdiff 151.1602 tig 23 read 519267 pos 12263-21382 IS confused by 5' edge to read 532038 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 5259 erate 0.0696 score 4892.97 - absdiff 2064.69 percdiff 34.8452 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 600399 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 2381 erate 0.0503 score 2261.24 - absdiff 4696.42 percdiff 101.8869 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 635145 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 2558 erate 0.0504 score 2429.08 - absdiff 4528.58 percdiff 96.4890 tig 23 read 519267 pos 12263-21382 NOT confused by 5' edge to read 685153 - best edge read 464865 len 7320 erate 0.0495 score 6957.66 - alt edge len 1341 erate 0.0485 score 1275.96 - absdiff 5681.70 percdiff 138.0121 tig 23 read 316552 pos 15729-22153 IS confused by 3' edge to read 109124 - best edge read 519267 len 3799 erate 0.0584 score 3577.14 - alt edge len 1989 erate 0.0634 score 1862.90 - absdiff 1714.24 percdiff 63.0232 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 27206 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 898 erate 0.0480 score 854.90 - absdiff 202.91 percdiff 21.2168 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 118005 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 540 erate 0.0564 score 509.54 - absdiff 548.26 percdiff 69.9601 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 698744 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 792 erate 0.0532 score 749.87 - absdiff 307.94 percdiff 34.0700 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 698746 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 796 erate 0.0555 score 751.82 - absdiff 305.98 percdiff 33.8170 tig 23 read 262070 pos 20655-28328 IS confused by 5' edge to read 698749 - best edge read 316552 len 1127 erate 0.0614 score 1057.80 - alt edge len 791 erate 0.0622 score 741.80 - absdiff 316.00 percdiff 35.1191 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 27206 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 1902 erate 0.0570 score 1793.59 - absdiff 2466.44 percdiff 81.4865 tig 23 read 337500 pos 24075-30694 IS confused by 5' edge to read 262068 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 4321 erate 0.0555 score 4081.18 - absdiff 178.84 percdiff 4.2881 tig 23 read 337500 pos 24075-30694 IS confused by 5' edge to read 312946 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 2661 erate 0.0664 score 2484.31 - absdiff 1775.71 percdiff 52.6579 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 316552 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 2138 erate 0.0639 score 2001.38 - absdiff 2258.64 percdiff 72.1449 tig 23 read 337500 pos 24075-30694 NOT confused by 3' edge to read 519267 - best edge read 323775 len 6058 erate 0.0612 score 5687.25 - alt edge len 1687 erate 0.0593 score 1586.96 - absdiff 4100.29 percdiff 112.7350 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 698744 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 1796 erate 0.0676 score 1674.59 - absdiff 2585.43 percdiff 87.1306 tig 23 read 337500 pos 24075-30694 NOT confused by 5' edge to read 698746 - best edge read 262070 len 4518 erate 0.0571 score 4260.02 - alt edge len 1799 erate 0.0664 score 1679.55 - absdiff 2580.48 percdiff 86.8910 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 27206 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1421 erate 0.0592 score 1336.88 - absdiff 5961.80 percdiff 138.0757 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 35386 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1404 erate 0.0467 score 1338.43 - absdiff 5943.24 percdiff 137.8925 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 35387 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1402 erate 0.0464 score 1336.95 - absdiff 5944.72 percdiff 137.9507 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 97301 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1179 erate 0.0554 score 1113.68 - absdiff 6167.98 percdiff 146.9381 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 172031 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 3089 erate 0.0680 score 2878.95 - absdiff 4402.72 percdiff 86.6625 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 231909 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1143 erate 0.0463 score 1090.08 - absdiff 6191.59 percdiff 147.9163 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 231910 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1157 erate 0.0498 score 1099.38 - absdiff 6182.29 percdiff 147.5301 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 262068 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1244 erate 0.0595 score 1169.98 - absdiff 6128.70 percdiff 144.7383 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 316552 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1654 erate 0.0562 score 1561.05 - absdiff 5737.63 percdiff 129.5217 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 379026 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 3087 erate 0.0499 score 2932.96 - absdiff 4348.71 percdiff 85.1467 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 464866 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 3084 erate 0.0433 score 2950.46 - absdiff 4331.21 percdiff 84.6589 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 489155 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1386 erate 0.0573 score 1306.58 - absdiff 5975.09 percdiff 139.1456 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 519267 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 1100 erate 0.0322 score 1064.58 - absdiff 6217.09 percdiff 148.9792 tig 23 read 323779 pos 24582-32106 NOT confused by 3' edge to read 677214 - best edge read 323778 len 7428 erate 0.0197 score 7281.67 - alt edge len 2140 erate 0.0512 score 2030.43 - absdiff 5251.24 percdiff 112.7831 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 698744 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1315 erate 0.0626 score 1232.68 - absdiff 6066.00 percdiff 142.2047 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 698746 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1318 erate 0.0622 score 1236.02 - absdiff 6062.66 percdiff 142.0708 tig 23 read 323779 pos 24582-32106 NOT confused by 5' edge to read 698749 - best edge read 323775 len 7456 erate 0.0211 score 7298.68 - alt edge len 1314 erate 0.0624 score 1232.01 - absdiff 6066.67 percdiff 142.2318 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 27206 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1432 erate 0.0564 score 1351.24 - absdiff 4511.57 percdiff 125.0775 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 35386 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1398 erate 0.0511 score 1326.56 - absdiff 5968.20 percdiff 138.4521 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 35387 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1396 erate 0.0500 score 1326.20 - absdiff 5968.56 percdiff 138.4663 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 172031 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 3128 erate 0.0703 score 2908.10 - absdiff 4386.66 percdiff 85.9888 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 231909 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1143 erate 0.0597 score 1074.76 - absdiff 6220.00 percdiff 148.6345 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 231910 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1157 erate 0.0629 score 1084.22 - absdiff 6210.54 percdiff 148.2408 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 262068 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1253 erate 0.0552 score 1183.83 - absdiff 4678.97 percdiff 132.8001 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 316552 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1665 erate 0.0529 score 1576.92 - absdiff 4285.88 percdiff 115.2162 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 379026 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 3073 erate 0.0505 score 2917.81 - absdiff 4376.95 percdiff 85.7168 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 464866 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 3070 erate 0.0440 score 2934.92 - absdiff 4359.84 percdiff 85.2391 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 489155 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 1380 erate 0.0632 score 1292.78 - absdiff 6001.98 percdiff 139.7833 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 519267 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 2906 erate 0.0407 score 2787.73 - absdiff 4507.04 percdiff 89.4033 tig 23 read 323775 pos 24847-32366 NOT confused by 3' edge to read 677214 - best edge read 323779 len 7452 erate 0.0211 score 7294.76 - alt edge len 2135 erate 0.0545 score 2018.64 - absdiff 5276.12 percdiff 113.3016 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 698744 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1325 erate 0.0618 score 1243.12 - absdiff 4619.69 percdiff 130.0237 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 698746 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1328 erate 0.0589 score 1249.78 - absdiff 4613.03 percdiff 129.7144 tig 23 read 323775 pos 24847-32366 NOT confused by 5' edge to read 698749 - best edge read 337500 len 6245 erate 0.0612 score 5862.81 - alt edge len 1324 erate 0.0607 score 1243.63 - absdiff 4619.17 percdiff 129.9996 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 27206 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1397 erate 0.0569 score 1317.51 - absdiff 5953.37 percdiff 138.6376 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 35386 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1422 erate 0.0489 score 1352.46 - absdiff 1596.04 percdiff 74.2178 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 35387 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1420 erate 0.0493 score 1349.99 - absdiff 1598.51 percdiff 74.3754 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 172031 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 3100 erate 0.0697 score 2883.93 - absdiff 64.58 percdiff 2.2144 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 231909 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1159 erate 0.0472 score 1104.30 - absdiff 1844.21 percdiff 91.0092 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 231910 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1173 erate 0.0507 score 1113.53 - absdiff 1834.98 percdiff 90.3477 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 262068 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1219 erate 0.0566 score 1150.00 - absdiff 6120.88 percdiff 145.3737 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 316552 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1633 erate 0.0551 score 1543.02 - absdiff 5727.86 percdiff 129.9733 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 379026 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 3098 erate 0.0463 score 2954.56 - absdiff 6.05 percdiff 0.2051 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 464866 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 3095 erate 0.0440 score 2958.82 - absdiff 10.31 percdiff 0.3491 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 489155 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1404 erate 0.0608 score 1318.64 - absdiff 1629.87 percdiff 76.3917 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 519267 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 1116 erate 0.0361 score 1075.71 - absdiff 1872.80 percdiff 93.0762 tig 23 read 323778 pos 24973-32478 IS confused by 5' edge to read 677214 - best edge read 600399 len 3105 erate 0.0504 score 2948.51 - alt edge len 2155 erate 0.0512 score 2044.66 - absdiff 903.84 percdiff 36.2032 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 698744 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1290 erate 0.0625 score 1209.38 - absdiff 6061.51 percdiff 142.9558 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 698746 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1293 erate 0.0588 score 1216.97 - absdiff 6053.91 percdiff 142.6488 tig 23 read 323778 pos 24973-32478 NOT confused by 3' edge to read 698749 - best edge read 323779 len 7417 erate 0.0197 score 7270.89 - alt edge len 1289 erate 0.0613 score 1209.98 - absdiff 6060.90 percdiff 142.9311 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 34339 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1049 erate 0.0510 score 995.50 - absdiff 4143.45 percdiff 135.0879 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 54635 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 778 erate 0.0678 score 725.25 - absdiff 4413.70 percdiff 150.5303 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 172031 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1873 erate 0.0652 score 1750.88 - absdiff 3388.07 percdiff 98.3499 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 231909 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1733 erate 0.0739 score 1604.93 - absdiff 3534.02 percdiff 104.8067 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 231910 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1747 erate 0.0704 score 1624.01 - absdiff 3514.94 percdiff 103.9468 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 316552 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1993 erate 0.0634 score 1866.64 - absdiff 3272.31 percdiff 93.4198 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 379026 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1870 erate 0.0668 score 1745.08 - absdiff 3393.87 percdiff 98.6011 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 464866 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1867 erate 0.0553 score 1763.75 - absdiff 3375.20 percdiff 97.7934 tig 23 read 109124 pos 25426-36711 IS confused by 5' edge to read 489155 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 3827 erate 0.0580 score 3605.03 - absdiff 1533.92 percdiff 35.0851 tig 23 read 109124 pos 25426-36711 IS confused by 5' edge to read 519267 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 5351 erate 0.0379 score 5148.20 - absdiff 9.25 percdiff 0.1797 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 548367 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 1879 erate 0.0608 score 1764.76 - absdiff 3374.20 percdiff 97.7502 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 677214 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 2778 erate 0.0677 score 2589.93 - absdiff 2549.02 percdiff 65.9610 tig 23 read 109124 pos 25426-36711 IS confused by 5' edge to read 692155 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 5080 erate 0.0624 score 4763.01 - absdiff 375.94 percdiff 7.5933 tig 23 read 109124 pos 25426-36711 NOT confused by 5' edge to read 98375 - best edge read 247879 len 5460 erate 0.0588 score 5138.95 - alt edge len 785 erate 0.0651 score 733.90 - absdiff 4405.06 percdiff 150.0143 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 34339 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1046 erate 0.0630 score 980.10 - absdiff 9861.44 percdiff 166.8370 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 98374 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 795 erate 0.0629 score 744.99 - absdiff 10096.55 percdiff 174.2807 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 98375 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 782 erate 0.0525 score 740.95 - absdiff 10100.60 percdiff 174.4115 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 172031 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1871 erate 0.0609 score 1757.06 - absdiff 9084.49 percdiff 144.2142 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 231910 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1742 erate 0.0741 score 1612.92 - absdiff 9228.62 percdiff 148.1979 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 464866 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1869 erate 0.0625 score 1752.19 - absdiff 9089.35 percdiff 144.3473 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 489155 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 3812 erate 0.0656 score 3561.93 - absdiff 7279.61 percdiff 101.0813 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 519267 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 5335 erate 0.0392 score 5125.87 - absdiff 5715.67 percdiff 71.5918 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 548367 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 1880 erate 0.0508 score 1784.50 - absdiff 9057.05 percdiff 143.4662 tig 23 read 109123 pos 25680-36958 NOT confused by 3' edge to read 692155 - best edge read 109124 len 11178 erate 0.0301 score 10841.54 - alt edge len 5065 erate 0.0683 score 4719.06 - absdiff 6122.48 percdiff 78.6921 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 35386 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 865 erate 0.0694 score 804.97 - absdiff 3467.98 percdiff 136.5906 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 35387 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 863 erate 0.0649 score 806.99 - absdiff 3465.96 percdiff 136.4566 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 231909 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 631 erate 0.0618 score 592.00 - absdiff 3680.95 percdiff 151.3250 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 231910 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 645 erate 0.0651 score 603.01 - absdiff 3669.94 percdiff 150.5320 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 362081 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 667 erate 0.0660 score 622.98 - absdiff 3649.97 percdiff 149.1024 tig 23 read 600399 pos 29537-35622 IS confused by 3' edge to read 464866 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 2516 erate 0.0723 score 2334.09 - absdiff 1938.86 percdiff 58.6906 tig 23 read 600399 pos 29537-35622 IS confused by 3' edge to read 489155 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 2641 erate 0.0576 score 2488.88 - absdiff 1784.07 percdiff 52.7689 tig 23 read 600399 pos 29537-35622 IS confused by 3' edge to read 519267 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 2365 erate 0.0503 score 2246.04 - absdiff 2026.91 percdiff 62.1848 tig 23 read 600399 pos 29537-35622 NOT confused by 3' edge to read 677214 - best edge read 109123 len 4570 erate 0.0650 score 4272.95 - alt edge len 1596 erate 0.0602 score 1499.92 - absdiff 2773.03 percdiff 96.0711 tig 23 read 516392 pos 37020-45156 IS confused by 3' edge to read 35387 - best edge read 615224 len 503 erate 0.0736 score 465.98 - alt edge len 610 erate 0.0667 score 569.31 - absdiff 103.33 percdiff 19.9622 saved region 5668:39210 - 36 best edges are potentially confused saved region 44484:45181 - 1 best edges are potentially confused break tig 23 into up to 5 pieces: 0 5168 unique (length 5168) 5168 39710 repeat (length 34542) 39710 43984 unique (length 4274) 43984 45681 repeat (length 1697) 45681 50456 unique (length 4775) Creating Unitig 113072 Creating Unitig 113073 Creating Unitig 113074 Creating Unitig 113075 For tig 23 unique region 0 5168 - 0/ 2 reads repeat/unique - unitig 113072 created. For tig 23 repeat region 5168 39710 - 237/ 0 reads repeat/unique - unitig 113073 created. For tig 23 unique region 39710 43984 - 0/ 11 reads repeat/unique - unitig 113074 created. For tig 23 repeat region 43984 45681 - 0/ 0 repeat/unique reads - no new unitig created. For tig 23 unique region 45681 50456 - 0/ 3 reads repeat/unique - unitig 113075 created. Annotating repeats in reads for tig 24/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 2392:11329 - contained in read 626321 1536- 11329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 0:972 - contained in read 666017 0- 5044 thickest edges to the repeat regions: saved region 3425:5074 - closest 5' read 167634 ( +2369) 1056:5071 ( -3) saved region 3425:5074 - closest 3' read 37008 ( -171) 3596:9087 ( +4013) saved region 7034:15046 - closest read 69290 ( +0) 7034:15319 ( +273) (contained) saved region 7034:15046 - closest 5' read 69290 ( +0) 7034:15319 ( +273) saved region 7034:15046 - closest 3' read 69290 ( +0) 7034:15319 ( +273) search for confused edges: tig 25 read 37008 pos 3596-9087 IS confused by 5' edge to read 379302 - best edge read 167634 len 1458 erate 0.0510 score 1383.64 - alt edge len 568 erate 0.0408 score 544.83 - absdiff 838.82 percdiff 86.9931 tig 25 read 37008 pos 3596-9087 IS confused by 5' edge to read 680265 - best edge read 167634 len 1458 erate 0.0510 score 1383.64 - alt edge len 593 erate 0.0292 score 575.68 - absdiff 807.96 percdiff 82.4730 tig 25 read 37008 pos 3596-9087 IS confused by 5' edge to read 711493 - best edge read 167634 len 1458 erate 0.0510 score 1383.64 - alt edge len 757 erate 0.0213 score 740.88 - absdiff 642.77 percdiff 60.5094 saved region 3425:5074 - 3 best edges are potentially confused discard region 7034:15046 - no confusion in best edges break tig 25 into up to 3 pieces: 0 2925 unique (length 2925) 2925 5574 repeat (length 2649) 5574 18148 unique (length 12574) Creating Unitig 113076 Creating Unitig 113077 Creating Unitig 113078 For tig 25 unique region 0 2925 - 0/ 2 reads repeat/unique - unitig 113076 created. For tig 25 repeat region 2925 5574 - 3/ 0 reads repeat/unique - unitig 113077 created. For tig 25 unique region 5574 18148 - 0/ 25 reads repeat/unique - unitig 113078 created. Annotating repeats in reads for tig 26/113047. Annotated with 103 overlaps. Scan reads to discard spanned repeats. discard region 15678:16599 - contained in read 618395 10106- 18261 discard region 35455:36979 - contained in read 483357 30875- 40751 thickest edges to the repeat regions: saved region 18303:34365 - closest 5' read 144668 ( +1161) 17142:24626 ( -9739) saved region 18303:34365 - closest 3' read 379302 ( -9400) 27703:36019 ( +1654) search for confused edges: tig 26 read 626844 pos 16677-23613 IS confused by 5' edge to read 289826 - best edge read 331845 len 4752 erate 0.0636 score 4449.77 - alt edge len 3045 erate 0.0514 score 2888.49 - absdiff 1561.29 percdiff 42.5519 tig 26 read 626844 pos 16677-23613 IS confused by 5' edge to read 289828 - best edge read 331845 len 4752 erate 0.0636 score 4449.77 - alt edge len 3044 erate 0.0532 score 2882.06 - absdiff 1567.71 percdiff 42.7646 tig 26 read 331845 pos 18756-28002 IS confused by 3' edge to read 289826 - best edge read 356402 len 8612 erate 0.0464 score 8212.40 - alt edge len 7335 erate 0.0493 score 6973.38 - absdiff 1239.02 percdiff 16.3181 tig 26 read 331845 pos 18756-28002 IS confused by 3' edge to read 289828 - best edge read 356402 len 8612 erate 0.0464 score 8212.40 - alt edge len 7334 erate 0.0492 score 6973.17 - absdiff 1239.24 percdiff 16.3212 tig 26 read 356402 pos 19257-28029 NOT confused by 5' edge to read 34066 - best edge read 356403 len 8604 erate 0.0072 score 8542.05 - alt edge len 1925 erate 0.0435 score 1841.26 - absdiff 6700.79 percdiff 129.0684 tig 26 read 356402 pos 19257-28029 IS confused by 3' edge to read 80006 - best edge read 331845 len 8462 erate 0.0464 score 8069.36 - alt edge len 7975 erate 0.0292 score 7742.13 - absdiff 327.23 percdiff 4.1392 tig 26 read 356402 pos 19257-28029 IS confused by 5' edge to read 289826 - best edge read 356403 len 8604 erate 0.0072 score 8542.05 - alt edge len 7344 erate 0.0130 score 7248.53 - absdiff 1293.52 percdiff 16.3835 tig 26 read 356402 pos 19257-28029 IS confused by 5' edge to read 289828 - best edge read 356403 len 8604 erate 0.0072 score 8542.05 - alt edge len 7343 erate 0.0137 score 7242.40 - absdiff 1299.65 percdiff 16.4675 tig 26 read 356402 pos 19257-28029 NOT confused by 3' edge to read 574084 - best edge read 331845 len 8462 erate 0.0464 score 8069.36 - alt edge len 2601 erate 0.0214 score 2545.34 - absdiff 5524.02 percdiff 104.0825 tig 26 read 356403 pos 19273-28107 NOT confused by 3' edge to read 34066 - best edge read 232970 len 8312 erate 0.0415 score 7967.05 - alt edge len 2005 erate 0.0474 score 1909.96 - absdiff 6057.09 percdiff 122.6502 tig 26 read 356403 pos 19273-28107 IS confused by 5' edge to read 80006 - best edge read 356402 len 8612 erate 0.0072 score 8549.99 - alt edge len 7961 erate 0.0261 score 7753.22 - absdiff 796.78 percdiff 9.7745 tig 26 read 356403 pos 19273-28107 IS confused by 3' edge to read 289826 - best edge read 232970 len 8312 erate 0.0415 score 7967.05 - alt edge len 7427 erate 0.0124 score 7334.91 - absdiff 632.15 percdiff 8.2623 tig 26 read 356403 pos 19273-28107 IS confused by 3' edge to read 289828 - best edge read 232970 len 8312 erate 0.0415 score 7967.05 - alt edge len 7426 erate 0.0123 score 7334.66 - absdiff 632.39 percdiff 8.2656 tig 26 read 356403 pos 19273-28107 NOT confused by 5' edge to read 574084 - best edge read 356402 len 8612 erate 0.0072 score 8549.99 - alt edge len 2579 erate 0.0175 score 2533.87 - absdiff 6016.13 percdiff 108.5565 tig 26 read 639956 pos 19362-31919 IS confused by 3' edge to read 34069 - best edge read 379302 len 3413 erate 0.0161 score 3358.05 - alt edge len 2987 erate 0.0204 score 2926.07 - absdiff 431.99 percdiff 13.7485 tig 26 read 639956 pos 19362-31919 IS confused by 5' edge to read 574084 - best edge read 626844 len 3320 erate 0.0680 score 3094.24 - alt edge len 1716 erate 0.0252 score 1672.76 - absdiff 1421.48 percdiff 59.6385 tig 26 read 232970 pos 19668-29851 NOT confused by 3' edge to read 34069 - best edge read 100341 len 8542 erate 0.0116 score 8442.91 - alt edge len 1791 erate 0.0351 score 1728.14 - absdiff 6714.78 percdiff 132.0371 tig 26 read 232970 pos 19668-29851 IS confused by 5' edge to read 80006 - best edge read 356403 len 8211 erate 0.0414 score 7871.06 - alt edge len 7615 erate 0.0307 score 7381.22 - absdiff 489.85 percdiff 6.4232 tig 26 read 232970 pos 19668-29851 NOT confused by 5' edge to read 574084 - best edge read 356403 len 8211 erate 0.0414 score 7871.06 - alt edge len 2212 erate 0.0246 score 2157.58 - absdiff 5713.48 percdiff 113.9432 tig 26 read 100341 pos 21236-30569 NOT confused by 3' edge to read 34069 - best edge read 270999 len 8792 erate 0.0115 score 8690.89 - alt edge len 2461 erate 0.0200 score 2411.78 - absdiff 6279.11 percdiff 113.1099 tig 26 read 100341 pos 21236-30569 NOT confused by 5' edge to read 80006 - best edge read 232970 len 8509 erate 0.0116 score 8410.30 - alt edge len 6109 erate 0.0321 score 5912.90 - absdiff 2497.39 percdiff 34.8720 tig 26 read 100341 pos 21236-30569 NOT confused by 5' edge to read 574084 - best edge read 232970 len 8509 erate 0.0116 score 8410.30 - alt edge len 723 erate 0.0181 score 709.91 - absdiff 7700.38 percdiff 168.8641 tig 26 read 270999 pos 21658-32135 IS confused by 3' edge to read 34069 - best edge read 379302 len 4424 erate 0.0352 score 4268.28 - alt edge len 3996 erate 0.0328 score 3864.93 - absdiff 403.34 percdiff 9.9184 tig 26 read 270999 pos 21658-32135 NOT confused by 5' edge to read 80006 - best edge read 100341 len 8769 erate 0.0115 score 8668.16 - alt edge len 5686 erate 0.0380 score 5469.93 - absdiff 3198.22 percdiff 45.2427 tig 26 read 379302 pos 27703-36019 IS confused by 5' edge to read 599837 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 4185 erate 0.0165 score 4115.95 - absdiff 82.86 percdiff 1.9931 tig 26 read 379302 pos 27703-36019 IS confused by 5' edge to read 643002 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 2556 erate 0.0188 score 2507.95 - absdiff 1690.86 percdiff 50.4227 tig 26 read 379302 pos 27703-36019 IS confused by 5' edge to read 643003 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 2560 erate 0.0160 score 2519.04 - absdiff 1679.77 percdiff 50.0091 tig 26 read 379302 pos 27703-36019 NOT confused by 5' edge to read 692570 - best edge read 270999 len 4352 erate 0.0352 score 4198.81 - alt edge len 1328 erate 0.0181 score 1303.96 - absdiff 2894.85 percdiff 105.2141 saved region 18303:34365 - 17 best edges are potentially confused break tig 26 into up to 3 pieces: 0 17803 unique (length 17803) 17803 34865 repeat (length 17062) 34865 47615 unique (length 12750) Creating Unitig 113079 Creating Unitig 113080 Creating Unitig 113081 For tig 26 unique region 0 17803 - 0/ 169 reads repeat/unique - unitig 113079 created. For tig 26 repeat region 17803 34865 - 161/ 0 reads repeat/unique - unitig 113080 created. For tig 26 unique region 34865 47615 - 0/ 13 reads repeat/unique - unitig 113081 created. Annotating repeats in reads for tig 29/113047. Annotated with 471 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9415 - closest 5' read 672762 ( +0) 0:7180 ( -2235) saved region 0:9415 - closest 3' read 539919 ( -2388) 2388:9415 ( +0) search for confused edges: tig 29 read 718181 pos 2437-13286 IS confused by 3' edge to read 17199 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 5443 erate 0.0335 score 5260.66 - absdiff 676.58 percdiff 12.0841 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 36062 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 653 erate 0.0720 score 605.98 - absdiff 5331.26 percdiff 162.9550 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 250405 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 3144 erate 0.0369 score 3027.99 - absdiff 2909.26 percdiff 64.9009 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 287455 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2771 erate 0.0495 score 2633.84 - absdiff 3303.41 percdiff 77.0826 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 287457 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2805 erate 0.0549 score 2651.01 - absdiff 3286.24 percdiff 76.5287 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 327420 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2777 erate 0.0659 score 2594.00 - absdiff 3343.25 percdiff 78.3766 tig 29 read 718181 pos 2437-13286 IS confused by 3' edge to read 472038 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 4799 erate 0.0387 score 4613.28 - absdiff 1323.96 percdiff 25.0976 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 563229 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 2472 erate 0.0336 score 2388.94 - absdiff 3548.30 percdiff 85.2324 tig 29 read 718181 pos 2437-13286 IS confused by 3' edge to read 563230 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 5250 erate 0.0402 score 5038.95 - absdiff 898.29 percdiff 16.3680 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 653348 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 3461 erate 0.0480 score 3294.87 - absdiff 2642.37 percdiff 57.2430 tig 29 read 718181 pos 2437-13286 NOT confused by 3' edge to read 691283 - best edge read 539919 len 6166 erate 0.0371 score 5937.24 - alt edge len 3680 erate 0.0583 score 3465.46 - absdiff 2471.79 percdiff 52.5761 saved region 0:9415 - 3 best edges are potentially confused break tig 29 into up to 2 pieces: 0 9915 repeat (length 9915) 9915 25919 unique (length 16004) Creating Unitig 113082 Creating Unitig 113083 For tig 29 repeat region 0 9915 - 28/ 0 reads repeat/unique - unitig 113082 created. For tig 29 unique region 9915 25919 - 0/ 14 reads repeat/unique - unitig 113083 created. Annotating repeats in reads for tig 30/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 0:6952 - contained in read 547485 0- 9812 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33/113047. Annotated with 1164 overlaps. Scan reads to discard spanned repeats. discard region 28952:31292 - contained in read 533613 27669- 32291 thickest edges to the repeat regions: saved region 6235:23655 - closest 5' read 510754 ( +4705) 1530:14933 ( -8722) saved region 6235:23655 - closest 3' read 118971 (-10395) 16630:24783 ( +1128) search for confused edges: tig 33 read 510754 pos 1530-14933 IS confused by 5' edge to read 98427 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 6383 erate 0.0484 score 6074.06 - absdiff 534.68 percdiff 8.4316 tig 33 read 510754 pos 1530-14933 IS confused by 5' edge to read 132715 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 6214 erate 0.0509 score 5897.71 - absdiff 711.04 percdiff 11.3707 tig 33 read 510754 pos 1530-14933 NOT confused by 5' edge to read 283236 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 562 erate 0.0505 score 533.62 - absdiff 6075.13 percdiff 170.1153 tig 33 read 510754 pos 1530-14933 IS confused by 5' edge to read 421121 - best edge read 531680 len 7110 erate 0.0705 score 6608.74 - alt edge len 4831 erate 0.0520 score 4579.79 - absdiff 2028.96 percdiff 36.2685 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 24956 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 4678 erate 0.0457 score 4464.22 - absdiff 2156.19 percdiff 38.9041 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 36467 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 3561 erate 0.0466 score 3395.06 - absdiff 3333.59 percdiff 65.8572 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 98427 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 6598 erate 0.0291 score 6406.00 - absdiff 214.40 percdiff 3.2918 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 119745 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 2214 erate 0.0592 score 2082.93 - absdiff 4537.47 percdiff 104.2697 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 132715 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 6425 erate 0.0298 score 6233.53 - absdiff 386.87 percdiff 6.0194 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 260673 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 2759 erate 0.0548 score 2607.81 - absdiff 4012.60 percdiff 86.9637 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 377979 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 3961 erate 0.0425 score 3792.66 - absdiff 2935.99 percdiff 55.8104 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 421121 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 5046 erate 0.0367 score 4860.81 - absdiff 1759.59 percdiff 30.6516 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 505572 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 4569 erate 0.0649 score 4272.47 - absdiff 2456.18 percdiff 44.6532 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 505574 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 4559 erate 0.0668 score 4254.46 - absdiff 2474.19 percdiff 45.0545 tig 33 read 531680 pos 7479-14935 IS confused by 3' edge to read 542862 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 5218 erate 0.0694 score 4855.87 - absdiff 1764.53 percdiff 30.7510 tig 33 read 531680 pos 7479-14935 NOT confused by 3' edge to read 550563 - best edge read 98426 len 6852 erate 0.0338 score 6620.40 - alt edge len 2117 erate 0.0519 score 2007.13 - absdiff 4613.27 percdiff 106.9431 tig 33 read 531680 pos 7479-14935 NOT confused by 5' edge to read 621498 - best edge read 510754 len 7239 erate 0.0705 score 6728.65 - alt edge len 1748 erate 0.0615 score 1640.50 - absdiff 5088.15 percdiff 121.5931 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 24956 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 4668 erate 0.0458 score 4454.21 - absdiff 1908.46 percdiff 35.2867 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 36467 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 2760 erate 0.0474 score 2629.18 - absdiff 4004.75 percdiff 86.4668 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 98427 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 6606 erate 0.0301 score 6407.16 - absdiff 44.50 percdiff 0.6969 tig 33 read 98426 pos 7708-14655 NOT confused by 5' edge to read 119745 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 2208 erate 0.0569 score 2082.36 - absdiff 4280.30 percdiff 101.3685 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 132715 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 6432 erate 0.0312 score 6231.32 - absdiff 131.34 percdiff 2.0858 tig 33 read 98426 pos 7708-14655 NOT confused by 5' edge to read 260673 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 2744 erate 0.0523 score 2600.49 - absdiff 3762.18 percdiff 83.9476 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 377979 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 3477 erate 0.0480 score 3310.10 - absdiff 3323.83 percdiff 66.8506 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 421121 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 5035 erate 0.0371 score 4848.20 - absdiff 1514.46 percdiff 27.0178 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 505572 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 4088 erate 0.0426 score 3913.85 - absdiff 2720.08 percdiff 51.5763 tig 33 read 98426 pos 7708-14655 NOT confused by 3' edge to read 505574 - best edge read 531680 len 6866 erate 0.0338 score 6633.93 - alt edge len 3765 erate 0.0458 score 3592.56 - absdiff 3041.37 percdiff 59.4801 tig 33 read 98426 pos 7708-14655 IS confused by 5' edge to read 542862 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 5209 erate 0.0655 score 4867.81 - absdiff 1494.85 percdiff 26.6214 tig 33 read 98426 pos 7708-14655 NOT confused by 5' edge to read 550563 - best edge read 660755 len 6776 erate 0.0610 score 6362.66 - alt edge len 2113 erate 0.0485 score 2010.52 - absdiff 4352.14 percdiff 103.9544 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 36467 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3209 erate 0.0293 score 3114.98 - absdiff 3512.12 percdiff 72.1021 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 283236 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 2461 erate 0.0428 score 2355.67 - absdiff 3676.21 percdiff 87.6588 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 283237 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 1861 erate 0.0662 score 1737.80 - absdiff 4294.08 percdiff 110.5342 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 377979 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3611 erate 0.0327 score 3492.92 - absdiff 3134.18 percdiff 61.9401 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 483829 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3220 erate 0.0649 score 3011.02 - absdiff 3616.07 percdiff 75.0369 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 483830 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3227 erate 0.0617 score 3027.89 - absdiff 3599.20 percdiff 74.5563 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 505572 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3284 erate 0.0277 score 3193.03 - absdiff 3434.06 percdiff 69.9393 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 505574 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 3902 erate 0.0298 score 3785.72 - absdiff 2841.38 percdiff 54.5746 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 578688 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 1553 erate 0.0509 score 1473.95 - absdiff 4557.93 percdiff 121.4503 tig 33 read 349670 pos 8117-16627 NOT confused by 5' edge to read 578689 - best edge read 580218 len 6205 erate 0.0279 score 6031.88 - alt edge len 1554 erate 0.0438 score 1485.93 - absdiff 4545.95 percdiff 120.9379 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 621497 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 1392 erate 0.0603 score 1308.06 - absdiff 5319.03 percdiff 134.0624 tig 33 read 349670 pos 8117-16627 NOT confused by 3' edge to read 621498 - best edge read 660755 len 6804 erate 0.0260 score 6627.10 - alt edge len 1397 erate 0.0544 score 1321.00 - absdiff 5306.09 percdiff 133.5185 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 36467 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3283 erate 0.0220 score 3210.77 - absdiff 3121.59 percdiff 65.4206 tig 33 read 660755 pos 8247-15212 IS confused by 3' edge to read 98427 - best edge read 349670 len 6808 erate 0.0260 score 6630.99 - alt edge len 6708 erate 0.0583 score 6316.92 - absdiff 314.07 percdiff 4.8513 tig 33 read 660755 pos 8247-15212 NOT confused by 3' edge to read 283236 - best edge read 349670 len 6808 erate 0.0260 score 6630.99 - alt edge len 864 erate 0.0376 score 831.51 - absdiff 5799.48 percdiff 155.4298 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 377979 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3681 erate 0.0245 score 3590.82 - absdiff 2741.55 percdiff 55.2554 tig 33 read 660755 pos 8247-15212 IS confused by 3' edge to read 421121 - best edge read 349670 len 6808 erate 0.0260 score 6630.99 - alt edge len 5147 erate 0.0665 score 4804.72 - absdiff 1826.27 percdiff 31.9397 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 483829 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 2667 erate 0.0547 score 2521.12 - absdiff 3811.25 percdiff 86.0961 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 483830 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3301 erate 0.0498 score 3136.61 - absdiff 3195.75 percdiff 67.4994 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 505572 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 2732 erate 0.0224 score 2670.80 - absdiff 3661.56 percdiff 81.3394 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 505574 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 3348 erate 0.0216 score 3275.68 - absdiff 3056.68 percdiff 63.6275 tig 33 read 660755 pos 8247-15212 NOT confused by 5' edge to read 621498 - best edge read 98426 len 6691 erate 0.0536 score 6332.36 - alt edge len 1460 erate 0.0377 score 1404.96 - absdiff 4927.40 percdiff 127.3672 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 36467 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1612 erate 0.0342 score 1556.87 - absdiff 4451.68 percdiff 117.6850 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 377979 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1080 erate 0.0445 score 1031.94 - absdiff 4976.61 percdiff 141.3711 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 483829 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1316 erate 0.0647 score 1230.85 - absdiff 4777.70 percdiff 131.9914 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 483830 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1323 erate 0.0591 score 1244.81 - absdiff 4763.74 percdiff 131.3526 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 505572 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1684 erate 0.0410 score 1614.96 - absdiff 4393.59 percdiff 115.2644 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 505574 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 748 erate 0.0481 score 712.02 - absdiff 5296.53 percdiff 157.6214 tig 33 read 580218 pos 10266-17020 IS confused by 3' edge to read 548717 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 6105 erate 0.0295 score 5924.90 - absdiff 83.65 percdiff 1.4019 tig 33 read 580218 pos 10266-17020 IS confused by 3' edge to read 553106 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 4159 erate 0.0486 score 3956.87 - absdiff 2051.68 percdiff 41.1759 tig 33 read 580218 pos 10266-17020 IS confused by 3' edge to read 553107 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 4165 erate 0.0411 score 3993.82 - absdiff 2014.73 percdiff 40.2851 tig 33 read 580218 pos 10266-17020 NOT confused by 5' edge to read 578688 - best edge read 116488 len 6389 erate 0.0449 score 6102.13 - alt edge len 2044 erate 0.0586 score 1924.22 - absdiff 4177.91 percdiff 104.1048 tig 33 read 580218 pos 10266-17020 NOT confused by 5' edge to read 578689 - best edge read 116488 len 6389 erate 0.0449 score 6102.13 - alt edge len 2045 erate 0.0532 score 1936.21 - absdiff 4165.93 percdiff 103.6514 tig 33 read 580218 pos 10266-17020 NOT confused by 3' edge to read 621498 - best edge read 349670 len 6181 erate 0.0279 score 6008.55 - alt edge len 1052 erate 0.0542 score 994.98 - absdiff 5013.57 percdiff 143.1726 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 36467 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 1081 erate 0.0648 score 1010.95 - absdiff 5620.87 percdiff 147.0898 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 78265 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 1447 erate 0.0435 score 1384.06 - absdiff 5247.76 percdiff 130.9343 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 234212 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 1310 erate 0.0709 score 1217.12 - absdiff 4818.86 percdiff 132.8773 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 295488 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 1320 erate 0.0629 score 1236.97 - absdiff 5394.85 percdiff 137.1201 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 377979 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 869 erate 0.0506 score 825.03 - absdiff 5806.79 percdiff 155.7438 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 483829 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 701 erate 0.0603 score 658.73 - absdiff 5377.26 percdiff 160.6418 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 483830 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 708 erate 0.0599 score 665.59 - absdiff 5370.39 percdiff 160.2726 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 505572 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 545 erate 0.0495 score 518.02 - absdiff 6113.79 percdiff 171.0191 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 505574 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 535 erate 0.0505 score 507.98 - absdiff 6123.83 percdiff 171.5408 tig 33 read 399587 pos 10363-18850 IS confused by 3' edge to read 548717 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 5232 erate 0.0478 score 4981.91 - absdiff 1054.07 percdiff 19.1339 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 553106 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 3311 erate 0.0718 score 3073.27 - absdiff 2962.72 percdiff 65.0485 tig 33 read 399587 pos 10363-18850 NOT confused by 3' edge to read 553107 - best edge read 355513 len 6353 erate 0.0499 score 6035.99 - alt edge len 3317 erate 0.0649 score 3101.73 - absdiff 2934.26 percdiff 64.2230 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 621497 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 834 erate 0.0683 score 777.04 - absdiff 5854.78 percdiff 158.0482 tig 33 read 399587 pos 10363-18850 NOT confused by 5' edge to read 621498 - best edge read 637670 len 6964 erate 0.0477 score 6631.82 - alt edge len 839 erate 0.0548 score 793.02 - absdiff 5838.79 percdiff 157.2773 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 234212 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1965 erate 0.0613 score 1844.55 - absdiff 4180.23 percdiff 106.2411 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 377979 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1129 erate 0.0399 score 1083.95 - absdiff 4940.82 percdiff 139.0072 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 483829 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1364 erate 0.0664 score 1273.43 - absdiff 4751.34 percdiff 130.2058 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 483830 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1371 erate 0.0625 score 1285.31 - absdiff 4739.46 percdiff 129.6691 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 505572 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1427 erate 0.0372 score 1373.92 - absdiff 4650.86 percdiff 125.7211 tig 33 read 116488 pos 10561-17251 IS confused by 3' edge to read 548717 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 5824 erate 0.0320 score 5637.63 - absdiff 387.14 percdiff 6.6391 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 553106 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 3913 erate 0.0435 score 3742.78 - absdiff 2281.99 percdiff 46.7258 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 553107 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 3919 erate 0.0346 score 3783.40 - absdiff 2241.37 percdiff 45.7041 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 621497 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1408 erate 0.0597 score 1323.94 - absdiff 4700.83 percdiff 127.9361 tig 33 read 116488 pos 10561-17251 NOT confused by 3' edge to read 621498 - best edge read 580218 len 6308 erate 0.0449 score 6024.77 - alt edge len 1413 erate 0.0488 score 1344.05 - absdiff 4680.73 percdiff 127.0414 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 234212 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1951 erate 0.0622 score 1829.65 - absdiff 4604.76 percdiff 111.4406 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 377979 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1425 erate 0.0442 score 1362.01 - absdiff 5072.39 percdiff 130.1210 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 483829 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1347 erate 0.0691 score 1253.92 - absdiff 5180.48 percdiff 134.7623 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 483830 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1354 erate 0.0659 score 1264.77 - absdiff 5169.63 percdiff 134.2905 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 505572 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1412 erate 0.0368 score 1360.04 - absdiff 5074.36 percdiff 130.2047 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 505574 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 1402 erate 0.0364 score 1350.97 - absdiff 5083.44 percdiff 130.5894 tig 33 read 116490 pos 10590-17378 IS confused by 3' edge to read 548717 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 5843 erate 0.0298 score 5668.88 - absdiff 765.52 percdiff 12.6499 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 553106 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 3894 erate 0.0468 score 3711.76 - absdiff 2722.64 percdiff 53.6684 tig 33 read 116490 pos 10590-17378 NOT confused by 3' edge to read 553107 - best edge read 116488 len 6674 erate 0.0359 score 6434.40 - alt edge len 3900 erate 0.0383 score 3750.63 - absdiff 2683.77 percdiff 52.7003 tig 33 read 116490 pos 10590-17378 NOT confused by 5' edge to read 578688 - best edge read 355513 len 6654 erate 0.0294 score 6458.37 - alt edge len 2339 erate 0.0617 score 2194.68 - absdiff 4263.69 percdiff 98.5476 tig 33 read 116490 pos 10590-17378 NOT confused by 5' edge to read 578689 - best edge read 355513 len 6654 erate 0.0294 score 6458.37 - alt edge len 2340 erate 0.0574 score 2205.68 - absdiff 4252.69 percdiff 98.1685 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 234212 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 1891 erate 0.0661 score 1766.00 - absdiff 4618.60 percdiff 113.3314 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 377979 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 1056 erate 0.0559 score 996.97 - absdiff 5387.64 percdiff 145.9752 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 505572 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 1043 erate 0.0499 score 990.95 - absdiff 5393.65 percdiff 146.2574 tig 33 read 355513 pos 10665-17695 IS confused by 3' edge to read 548717 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 5770 erate 0.0298 score 5598.05 - absdiff 786.55 percdiff 13.1282 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 553106 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 3832 erate 0.0459 score 3656.11 - absdiff 2728.50 percdiff 54.3486 tig 33 read 355513 pos 10665-17695 NOT confused by 3' edge to read 553107 - best edge read 116490 len 6578 erate 0.0294 score 6384.61 - alt edge len 3838 erate 0.0386 score 3689.85 - absdiff 2694.75 percdiff 53.4967 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 36467 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 1093 erate 0.0659 score 1020.97 - absdiff 5764.64 percdiff 147.6867 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 78265 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 1456 erate 0.0495 score 1383.93 - absdiff 5401.68 percdiff 132.2396 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 295488 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 1330 erate 0.0649 score 1243.68 - absdiff 5541.93 percdiff 138.0427 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 483829 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 800 erate 0.0678 score 745.76 - absdiff 6039.85 percdiff 160.3918 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 483830 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 807 erate 0.0686 score 751.64 - absdiff 6033.97 percdiff 160.1107 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 505572 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 554 erate 0.0397 score 532.01 - absdiff 6253.61 percdiff 170.9192 tig 33 read 637670 pos 12730-19804 NOT confused by 5' edge to read 505574 - best edge read 529310 len 6934 erate 0.0214 score 6785.61 - alt edge len 544 erate 0.0404 score 522.02 - absdiff 6263.59 percdiff 171.4259 tig 33 read 637670 pos 12730-19804 NOT confused by 3' edge to read 548717 - best edge read 399587 len 7007 erate 0.0477 score 6672.77 - alt edge len 3776 erate 0.0262 score 3677.07 - absdiff 2995.70 percdiff 57.8888 tig 33 read 637670 pos 12730-19804 NOT confused by 3' edge to read 553106 - best edge read 399587 len 7007 erate 0.0477 score 6672.77 - alt edge len 1834 erate 0.0461 score 1749.45 - absdiff 4923.31 percdiff 116.9125 tig 33 read 637670 pos 12730-19804 NOT confused by 3' edge to read 553107 - best edge read 399587 len 7007 erate 0.0477 score 6672.77 - alt edge len 1840 erate 0.0367 score 1772.47 - absdiff 4900.29 percdiff 116.0487 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 36467 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1247 erate 0.0378 score 1199.86 - absdiff 2277.49 percdiff 97.3866 tig 33 read 529311 pos 12810-20269 IS confused by 5' edge to read 78265 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1919 erate 0.0428 score 1836.87 - absdiff 1640.49 percdiff 61.7396 tig 33 read 529311 pos 12810-20269 IS confused by 5' edge to read 295488 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1790 erate 0.0659 score 1672.04 - absdiff 1805.32 percdiff 70.1176 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 377979 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1335 erate 0.0465 score 1272.92 - absdiff 2204.43 percdiff 92.8128 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 483830 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1265 erate 0.0618 score 1186.82 - absdiff 2290.53 percdiff 98.2181 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 505572 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 1322 erate 0.0409 score 1267.93 - absdiff 2209.43 percdiff 93.1209 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 505574 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 690 erate 0.0451 score 658.88 - absdiff 2818.48 percdiff 136.2821 tig 33 read 529311 pos 12810-20269 NOT confused by 3' edge to read 548717 - best edge read 529310 len 7397 erate 0.0237 score 7221.69 - alt edge len 3687 erate 0.0309 score 3573.07 - absdiff 3648.62 percdiff 67.5998 tig 33 read 529311 pos 12810-20269 NOT confused by 3' edge to read 553106 - best edge read 529310 len 7397 erate 0.0237 score 7221.69 - alt edge len 1737 erate 0.0540 score 1643.20 - absdiff 5578.49 percdiff 125.8558 tig 33 read 529311 pos 12810-20269 NOT confused by 3' edge to read 553107 - best edge read 529310 len 7397 erate 0.0237 score 7221.69 - alt edge len 1743 erate 0.0448 score 1664.91 - absdiff 5556.78 percdiff 125.0596 tig 33 read 529311 pos 12810-20269 NOT confused by 5' edge to read 621498 - best edge read 118971 len 3579 erate 0.0284 score 3477.36 - alt edge len 996 erate 0.0523 score 943.91 - absdiff 2533.45 percdiff 114.6028 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 36467 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1551 erate 0.0561 score 1463.99 - absdiff 5749.89 percdiff 132.5185 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 78265 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1913 erate 0.0476 score 1821.94 - absdiff 5391.94 percdiff 119.3459 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 295488 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1787 erate 0.0688 score 1664.05 - absdiff 5549.83 percdiff 125.0252 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 377979 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1335 erate 0.0449 score 1275.06 - absdiff 5938.82 percdiff 139.9191 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 483829 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1258 erate 0.0668 score 1173.97 - absdiff 6039.92 percdiff 144.0159 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 483830 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1266 erate 0.0666 score 1181.68 - absdiff 6032.20 percdiff 143.6996 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 505572 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1011 erate 0.0406 score 969.95 - absdiff 6243.93 percdiff 152.5917 tig 33 read 529310 pos 12814-20271 NOT confused by 3' edge to read 505574 - best edge read 529311 len 7389 erate 0.0237 score 7213.88 - alt edge len 1001 erate 0.0390 score 961.96 - absdiff 6251.92 percdiff 152.9364 tig 33 read 529310 pos 12814-20271 NOT confused by 5' edge to read 548717 - best edge read 637670 len 6936 erate 0.0214 score 6787.57 - alt edge len 3694 erate 0.0274 score 3592.78 - absdiff 3194.79 percdiff 61.5545 tig 33 read 529310 pos 12814-20271 NOT confused by 5' edge to read 553106 - best edge read 637670 len 6936 erate 0.0214 score 6787.57 - alt edge len 1748 erate 0.0487 score 1662.87 - absdiff 5124.70 percdiff 121.2883 tig 33 read 529310 pos 12814-20271 NOT confused by 5' edge to read 553107 - best edge read 637670 len 6936 erate 0.0214 score 6787.57 - alt edge len 1754 erate 0.0378 score 1687.70 - absdiff 5099.87 percdiff 120.3471 saved region 6235:23655 - 23 best edges are potentially confused break tig 33 into up to 3 pieces: 0 5735 unique (length 5735) 5735 24155 repeat (length 18420) 24155 39942 unique (length 15787) Creating Unitig 113084 Creating Unitig 113085 Creating Unitig 113086 For tig 33 unique region 0 5735 - 0/ 16 reads repeat/unique - unitig 113084 created. For tig 33 repeat region 5735 24155 - 162/ 0 reads repeat/unique - unitig 113085 created. For tig 33 unique region 24155 39942 - 0/ 18 reads repeat/unique - unitig 113086 created. Annotating repeats in reads for tig 35/113047. Annotated with 126 overlaps. Scan reads to discard spanned repeats. discard region 2079:4768 - contained in read 114395 0- 6109 discard region 9955:13273 - contained in read 560452 2687- 16606 discard region 21312:23845 - contained in read 21511 16291- 25605 discard region 38243:41738 - contained in read 80900 34421- 44659 thickest edges to the repeat regions: saved region 13661:20673 - closest read 330135 ( +222) 13439:20926 ( +253) (contained) saved region 13661:20673 - closest 5' read 330135 ( +222) 13439:20926 ( +253) saved region 13661:20673 - closest 3' read 330135 ( +222) 13439:20926 ( +253) saved region 29364:37083 - closest 5' read 121374 ( +3211) 26153:37055 ( -28) saved region 29364:37083 - closest 3' read 80900 ( -5057) 34421:44659 ( +7576) search for confused edges: discard region 13661:20673 - no confusion in best edges discard region 29364:37083 - no confusion in best edges Annotating repeats in reads for tig 38/113047. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 5034:5656 - contained in read 720882 3210- 6643 thickest edges to the repeat regions: saved region 0:4762 - closest 5' read 291495 ( +0) 0:4693 ( -69) saved region 0:4762 - closest 3' read 720882 ( -3210) 3210:6643 ( +1881) search for confused edges: discard region 0:4762 - no confusion in best edges Annotating repeats in reads for tig 39/113047. Annotated with 201 overlaps. Scan reads to discard spanned repeats. discard region 15006:15612 - contained in read 393888 8125- 16921 thickest edges to the repeat regions: saved region 16164:28514 - closest 5' read 112222 ( +0) 16164:20916 ( -7598) saved region 16164:28514 - closest 3' read 275269 ( -148) 16312:28514 ( +0) search for confused edges: tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60544 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6157 erate 0.0344 score 5945.20 - absdiff 2609.54 percdiff 35.9938 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60545 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6140 erate 0.0345 score 5928.17 - absdiff 2626.56 percdiff 36.2712 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60546 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6160 erate 0.0354 score 5941.94 - absdiff 2612.80 percdiff 36.0469 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 60547 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6163 erate 0.0319 score 5966.40 - absdiff 2588.33 percdiff 35.6492 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 499458 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 3037 erate 0.0232 score 2966.54 - absdiff 5588.19 percdiff 97.0065 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 541838 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 4932 erate 0.0211 score 4827.93 - absdiff 3726.80 percdiff 55.6959 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 659233 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 6218 erate 0.0178 score 6107.32 - absdiff 2447.42 percdiff 33.3843 tig 39 read 109876 pos 16284-25239 NOT confused by 5' edge to read 713390 - best edge read 275269 len 8854 erate 0.0338 score 8554.73 - alt edge len 1327 erate 0.0241 score 1295.02 - absdiff 7259.72 percdiff 147.4091 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 17408 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 789 erate 0.0536 score 746.71 - absdiff 7768.41 percdiff 167.7511 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 60921 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 3072 erate 0.0537 score 2907.03 - absdiff 5608.09 percdiff 98.1967 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 92794 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 2304 erate 0.0674 score 2148.71 - absdiff 6366.41 percdiff 119.4019 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 229182 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 2604 erate 0.0457 score 2485.00 - absdiff 6030.12 percdiff 109.6374 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 299294 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 3391 erate 0.0452 score 3237.73 - absdiff 5277.39 percdiff 89.8062 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 355019 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 2746 erate 0.0510 score 2605.95 - absdiff 5909.17 percdiff 106.2697 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 471657 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 775 erate 0.0400 score 744.00 - absdiff 7771.12 percdiff 167.8587 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 570052 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 732 erate 0.0562 score 690.86 - absdiff 7824.26 percdiff 169.9821 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 570053 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 749 erate 0.0514 score 710.50 - absdiff 7804.62 percdiff 169.1944 tig 39 read 275269 pos 16312-28514 NOT confused by 5' edge to read 593537 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 812 erate 0.0471 score 773.75 - absdiff 7741.37 percdiff 166.6804 tig 39 read 275269 pos 16312-28514 IS confused by 5' edge to read 657576 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 8529 erate 0.0285 score 8285.92 - absdiff 229.20 percdiff 2.7284 tig 39 read 275269 pos 16312-28514 IS confused by 5' edge to read 657577 - best edge read 109876 len 8813 erate 0.0338 score 8515.12 - alt edge len 8448 erate 0.0327 score 8171.75 - absdiff 343.37 percdiff 4.1155 saved region 16164:28514 - 2 best edges are potentially confused break tig 39 into up to 2 pieces: 0 15664 unique (length 15664) 15664 28514 repeat (length 12850) Creating Unitig 113087 Creating Unitig 113088 For tig 39 unique region 0 15664 - 0/ 19 reads repeat/unique - unitig 113087 created. For tig 39 repeat region 15664 28514 - 77/ 0 reads repeat/unique - unitig 113088 created. Annotating repeats in reads for tig 41/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5096:11079 - contained in read 92087 3033- 11079 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 0:8196 - contained in read 642492 0- 10299 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45/113047. Annotated with 995 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14607 - closest 5' read 648663 ( +0) 0:8717 ( -5890) saved region 0:14607 - closest 3' read 65518 (-10486) 10486:14607 ( +0) search for confused edges: tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 258764 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3277 erate 0.0327 score 3169.84 - absdiff 4538.93 percdiff 83.4469 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 258766 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3278 erate 0.0311 score 3176.05 - absdiff 4532.72 percdiff 83.2851 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 258769 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3279 erate 0.0305 score 3178.99 - absdiff 4529.78 percdiff 83.2087 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 275687 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3466 erate 0.0306 score 3359.94 - absdiff 4348.83 percdiff 78.5788 tig 45 read 54715 pos 244-9565 IS confused by 5' edge to read 286039 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 6378 erate 0.0480 score 6071.86 - absdiff 1636.92 percdiff 23.7568 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 466897 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 3421 erate 0.0524 score 3241.74 - absdiff 4467.03 percdiff 81.5858 tig 45 read 54715 pos 244-9565 NOT confused by 5' edge to read 611731 - best edge read 648663 len 8173 erate 0.0568 score 7708.77 - alt edge len 5551 erate 0.0400 score 5328.96 - absdiff 2379.81 percdiff 36.5066 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 258764 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3266 erate 0.0315 score 3163.12 - absdiff 5898.73 percdiff 96.5030 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 258766 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3267 erate 0.0306 score 3167.03 - absdiff 5894.82 percdiff 96.4082 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 258769 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3268 erate 0.0309 score 3167.02 - absdiff 5894.83 percdiff 96.4085 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 275687 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3455 erate 0.0292 score 3354.11 - absdiff 5707.74 percdiff 91.9419 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 286039 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 6366 erate 0.0484 score 6057.89 - absdiff 3003.97 percdiff 39.7357 tig 45 read 54714 pos 424-9772 NOT confused by 3' edge to read 466897 - best edge read 54715 len 9184 erate 0.0133 score 9061.85 - alt edge len 3410 erate 0.0541 score 3225.52 - absdiff 5836.33 percdiff 94.9973 tig 45 read 54714 pos 424-9772 NOT confused by 5' edge to read 611731 - best edge read 364992 len 5619 erate 0.0599 score 5282.42 - alt edge len 1313 erate 0.0293 score 1274.53 - absdiff 4007.89 percdiff 122.2487 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 258764 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2704 erate 0.0503 score 2567.99 - absdiff 2746.95 percdiff 69.6936 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 258766 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2705 erate 0.0540 score 2558.93 - absdiff 2756.01 percdiff 70.0039 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 258769 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2706 erate 0.0523 score 2564.48 - absdiff 2750.46 percdiff 69.8139 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 275687 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2893 erate 0.0633 score 2709.87 - absdiff 2605.06 percdiff 64.9253 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 286039 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2825 erate 0.0304 score 2739.12 - absdiff 2575.82 percdiff 63.9632 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 466897 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2848 erate 0.0531 score 2696.77 - absdiff 2618.17 percdiff 65.3585 tig 45 read 364992 pos 1520-10627 NOT confused by 5' edge to read 611731 - best edge read 54714 len 5696 erate 0.0669 score 5314.94 - alt edge len 2002 erate 0.0267 score 1948.55 - absdiff 3366.39 percdiff 92.6936 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 27206 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 787 erate 0.0606 score 739.31 - absdiff 6580.82 percdiff 163.3072 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 152124 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 1137 erate 0.0695 score 1057.98 - absdiff 6262.15 percdiff 149.4884 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 262068 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 607 erate 0.0447 score 579.87 - absdiff 6740.26 percdiff 170.6396 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 262070 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 807 erate 0.0665 score 753.33 - absdiff 6566.79 percdiff 162.6760 tig 45 read 189901 pos 2273-11076 NOT confused by 3' edge to read 316552 - best edge read 648663 len 7850 erate 0.0675 score 7320.12 - alt edge len 1019 erate 0.0638 score 953.99 - absdiff 6366.14 percdiff 153.8808 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 258764 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2677 erate 0.0510 score 2540.47 - absdiff 6068.28 percdiff 108.8556 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 258766 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2675 erate 0.0548 score 2528.41 - absdiff 6080.34 percdiff 109.1901 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 258769 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2679 erate 0.0524 score 2538.62 - absdiff 6070.13 percdiff 108.9069 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 275687 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2864 erate 0.0648 score 2678.41 - absdiff 5930.34 percdiff 105.0811 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 286039 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2796 erate 0.0374 score 2691.43 - absdiff 5917.32 percdiff 104.7297 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 466897 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 2819 erate 0.0543 score 2665.93 - absdiff 5942.82 percdiff 105.4189 tig 45 read 542811 pos 2886-12934 NOT confused by 5' edge to read 575958 - best edge read 189901 len 7246 erate 0.0355 score 6988.77 - alt edge len 3324 erate 0.0596 score 3125.89 - absdiff 3862.88 percdiff 76.3818 tig 45 read 542811 pos 2886-12934 NOT confused by 3' edge to read 611731 - best edge read 364992 len 8875 erate 0.0300 score 8608.75 - alt edge len 1973 erate 0.0423 score 1889.54 - absdiff 6719.21 percdiff 128.0057 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 28980 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 2380 erate 0.0654 score 2224.35 - absdiff 4149.28 percdiff 96.5176 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 28981 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 2391 erate 0.0593 score 2249.21 - absdiff 4124.41 percdiff 95.6625 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 47651 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 597 erate 0.0554 score 563.93 - absdiff 5809.70 percdiff 167.4856 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 110646 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1796 erate 0.0552 score 1696.86 - absdiff 4676.77 percdiff 115.8980 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 262068 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 784 erate 0.0489 score 745.66 - absdiff 5627.97 percdiff 158.1047 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 262070 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 796 erate 0.0532 score 753.65 - absdiff 5619.98 percdiff 157.7032 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 318225 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 894 erate 0.0494 score 849.84 - absdiff 5523.79 percdiff 152.9402 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 323775 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1312 erate 0.0618 score 1230.92 - absdiff 5142.71 percdiff 135.2536 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 323778 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1282 erate 0.0625 score 1201.88 - absdiff 5171.75 percdiff 136.5389 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 323779 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1311 erate 0.0626 score 1228.93 - absdiff 5144.70 percdiff 135.3412 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 332571 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1756 erate 0.0598 score 1650.99 - absdiff 4722.64 percdiff 117.7037 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 337500 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 1795 erate 0.0676 score 1673.66 - absdiff 4699.97 percdiff 116.8088 tig 45 read 698744 pos 5404-11996 NOT confused by 5' edge to read 572222 - best edge read 698746 len 6453 erate 0.0123 score 6373.63 - alt edge len 2158 erate 0.0618 score 2024.64 - absdiff 4348.99 percdiff 103.5688 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 28980 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 2391 erate 0.0696 score 2224.59 - absdiff 4158.34 percdiff 96.6212 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 28981 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 2402 erate 0.0597 score 2258.60 - absdiff 4124.33 percdiff 95.4537 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 47651 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1903 erate 0.0668 score 1775.88 - absdiff 4607.05 percdiff 112.9344 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 110646 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1805 erate 0.0562 score 1703.56 - absdiff 4679.37 percdiff 115.7331 tig 45 read 698749 pos 5968-12572 NOT confused by 5' edge to read 262068 - best edge read 364992 len 4049 erate 0.0603 score 3804.85 - alt edge len 778 erate 0.0585 score 732.49 - absdiff 3072.36 percdiff 135.4258 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 262070 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 808 erate 0.0622 score 757.74 - absdiff 5625.19 percdiff 157.5534 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 318225 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 902 erate 0.0562 score 851.31 - absdiff 5531.62 percdiff 152.9290 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 323775 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1321 erate 0.0607 score 1240.82 - absdiff 5142.11 percdiff 134.8973 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 323778 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1292 erate 0.0613 score 1212.80 - absdiff 5170.13 percdiff 136.1325 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 323779 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1320 erate 0.0624 score 1237.63 - absdiff 5145.30 percdiff 135.0372 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 332571 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 1768 erate 0.0626 score 1657.32 - absdiff 4725.61 percdiff 117.5487 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 572222 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 2168 erate 0.0643 score 2028.60 - absdiff 4354.33 percdiff 103.5325 tig 45 read 698749 pos 5968-12572 NOT confused by 3' edge to read 601842 - best edge read 698744 len 6467 erate 0.0130 score 6382.93 - alt edge len 512 erate 0.0697 score 476.31 - absdiff 5906.62 percdiff 172.2235 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 28980 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 2396 erate 0.0682 score 2232.59 - absdiff 2719.21 percdiff 75.6977 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 28981 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 2407 erate 0.0605 score 2261.38 - absdiff 2690.43 percdiff 74.5976 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 47651 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 610 erate 0.0598 score 573.52 - absdiff 4378.28 percdiff 158.4805 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 110646 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1809 erate 0.0549 score 1709.69 - absdiff 3242.12 percdiff 97.3392 tig 45 read 698746 pos 6264-12870 NOT confused by 3' edge to read 262068 - best edge read 698744 len 6458 erate 0.0123 score 6378.57 - alt edge len 773 erate 0.0560 score 729.71 - absdiff 5648.85 percdiff 158.9373 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 262070 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 814 erate 0.0555 score 768.82 - absdiff 4182.98 percdiff 146.2421 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 318225 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 910 erate 0.0525 score 862.23 - absdiff 4089.58 percdiff 140.6797 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 323775 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1328 erate 0.0588 score 1249.91 - absdiff 3701.89 percdiff 119.3828 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 323778 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1299 erate 0.0588 score 1222.62 - absdiff 3729.19 percdiff 120.7946 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 323779 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1327 erate 0.0622 score 1244.46 - absdiff 3707.35 percdiff 119.6638 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 332571 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1772 erate 0.0584 score 1668.52 - absdiff 3283.29 percdiff 99.1883 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 332573 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1739 erate 0.0664 score 1623.53 - absdiff 3328.28 percdiff 101.2351 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 337500 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 1808 erate 0.0664 score 1687.95 - absdiff 3263.86 percdiff 98.3126 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 572222 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 2172 erate 0.0622 score 2036.90 - absdiff 2914.90 percdiff 83.4176 tig 45 read 698746 pos 6264-12870 NOT confused by 5' edge to read 601842 - best edge read 635073 len 5269 erate 0.0602 score 4951.81 - alt edge len 518 erate 0.0631 score 485.31 - absdiff 4466.49 percdiff 164.2962 tig 45 read 635073 pos 6379-12191 IS confused by 5' edge to read 27469 - best edge read 311209 len 2829 erate 0.0424 score 2709.05 - alt edge len 1515 erate 0.0595 score 1424.86 - absdiff 1284.19 percdiff 62.1297 tig 45 read 635073 pos 6379-12191 NOT confused by 3' edge to read 286039 - best edge read 698746 len 5369 erate 0.0602 score 5045.79 - alt edge len 790 erate 0.0601 score 742.52 - absdiff 4303.27 percdiff 148.6882 tig 45 read 635073 pos 6379-12191 IS confused by 5' edge to read 332571 - best edge read 311209 len 2829 erate 0.0424 score 2709.05 - alt edge len 812 erate 0.0552 score 767.18 - absdiff 1941.87 percdiff 111.7230 tig 45 read 635073 pos 6379-12191 NOT confused by 3' edge to read 466897 - best edge read 698746 len 5369 erate 0.0602 score 5045.79 - alt edge len 2998 erate 0.0525 score 2840.61 - absdiff 2205.18 percdiff 55.9237 tig 45 read 635073 pos 6379-12191 NOT confused by 3' edge to read 575958 - best edge read 698746 len 5369 erate 0.0602 score 5045.79 - alt edge len 677 erate 0.0463 score 645.65 - absdiff 4400.13 percdiff 154.6227 saved region 0:14607 - 3 best edges are potentially confused Annotating repeats in reads for tig 47/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 48/113047. Annotated with 195 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8401 - closest 5' read 389607 ( +0) 0:4753 ( -3648) saved region 0:8401 - closest 3' read 491949 ( -2378) 2378:8401 ( +0) search for confused edges: tig 48 read 389607 pos 0-4753 NOT confused by 5' edge to read 106186 - best edge read 11041 len 3612 erate 0.0356 score 3483.41 - alt edge len 904 erate 0.0244 score 881.94 - absdiff 2601.47 percdiff 119.1871 tig 48 read 572222 pos 30-4776 NOT confused by 3' edge to read 27206 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 978 erate 0.0637 score 915.70 - absdiff 3174.75 percdiff 126.8339 tig 48 read 572222 pos 30-4776 NOT confused by 5' edge to read 106186 - best edge read 389607 len 4697 erate 0.0432 score 4494.09 - alt edge len 895 erate 0.0169 score 879.87 - absdiff 3614.22 percdiff 134.5083 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 262068 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2119 erate 0.0434 score 2027.04 - absdiff 2063.42 percdiff 67.4596 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 262070 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2318 erate 0.0478 score 2207.20 - absdiff 1883.25 percdiff 59.8081 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 316552 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2537 erate 0.0566 score 2393.41 - absdiff 1697.05 percdiff 52.3468 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 698744 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2191 erate 0.0618 score 2055.60 - absdiff 2034.86 percdiff 66.2167 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 698746 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2195 erate 0.0622 score 2058.47 - absdiff 2031.98 percdiff 66.0923 tig 48 read 572222 pos 30-4776 IS confused by 3' edge to read 698749 - best edge read 318225 len 4260 erate 0.0398 score 4090.45 - alt edge len 2190 erate 0.0643 score 2049.18 - absdiff 2041.27 percdiff 66.4948 tig 48 read 11041 pos 758-6556 NOT confused by 5' edge to read 492936 - best edge read 637905 len 4995 erate 0.0393 score 4798.70 - alt edge len 774 erate 0.0402 score 742.89 - absdiff 4055.81 percdiff 146.3774 tig 48 read 637906 pos 905-6191 NOT confused by 3' edge to read 420616 - best edge read 637905 len 5194 erate 0.0110 score 5136.87 - alt edge len 1678 erate 0.0737 score 1554.33 - absdiff 3582.53 percdiff 107.0820 tig 48 read 637906 pos 905-6191 NOT confused by 5' edge to read 492936 - best edge read 233813 len 4437 erate 0.0304 score 4302.12 - alt edge len 1614 erate 0.0688 score 1502.96 - absdiff 2799.16 percdiff 96.4384 tig 48 read 637906 pos 905-6191 NOT confused by 5' edge to read 492937 - best edge read 233813 len 4437 erate 0.0304 score 4302.12 - alt edge len 1228 erate 0.0733 score 1137.99 - absdiff 3164.13 percdiff 116.3260 tig 48 read 637905 pos 1097-6963 NOT confused by 3' edge to read 492936 - best edge read 637906 len 5177 erate 0.0110 score 5120.05 - alt edge len 1578 erate 0.0616 score 1480.80 - absdiff 3639.26 percdiff 110.2664 tig 48 read 637905 pos 1097-6963 NOT confused by 3' edge to read 492937 - best edge read 637906 len 5177 erate 0.0110 score 5120.05 - alt edge len 1192 erate 0.0469 score 1136.10 - absdiff 3983.96 percdiff 127.3614 tig 48 read 106186 pos 5951-9272 IS confused by 5' edge to read 389607 - best edge read 702692 len 973 erate 0.0580 score 916.57 - alt edge len 922 erate 0.0244 score 899.50 - absdiff 17.06 percdiff 1.8791 tig 48 read 106186 pos 5951-9272 IS confused by 5' edge to read 572222 - best edge read 702692 len 973 erate 0.0580 score 916.57 - alt edge len 898 erate 0.0158 score 883.81 - absdiff 32.75 percdiff 3.6386 saved region 0:8401 - 8 best edges are potentially confused break tig 48 into up to 2 pieces: 0 8901 repeat (length 8901) 8901 9272 unique (length 371) Creating Unitig 113089 Creating Unitig 113090 For tig 48 repeat region 0 8901 - 38/ 0 reads repeat/unique - unitig 113089 created. For tig 48 unique region 8901 9272 - 0/ 1 reads repeat/unique - unitig 113090 created. Annotating repeats in reads for tig 50/113047. Annotated with 104 overlaps. Scan reads to discard spanned repeats. discard region 15948:17040 - contained in read 707587 6209- 18317 discard region 17159:19756 - contained in read 496405 12932- 27633 discard region 22337:28048 - contained in read 478810 17394- 43630 discard region 34221:41716 - contained in read 478810 17394- 43630 discard region 46114:46783 - contained in read 255236 32605- 50433 thickest edges to the repeat regions: saved region 4262:11966 - closest 5' read 255460 ( +111) 4151:10501 ( -1465) saved region 4262:11966 - closest 3' read 227931 ( -789) 5051:12329 ( +363) search for confused edges: discard region 4262:11966 - no confusion in best edges Annotating repeats in reads for tig 52/113047. Annotated with 563 overlaps. Scan reads to discard spanned repeats. discard region 25770:29792 - contained in read 228822 24658- 34313 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 54/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 11119:11775 - contained in read 19697 5844- 14358 discard region 12922:15797 - contained in read 587422 11801- 17324 discard region 16680:17324 - contained in read 252119 12348- 23300 discard region 20374:21848 - contained in read 252119 12348- 23300 discard region 22045:24561 - contained in read 230358 20384- 26326 thickest edges to the repeat regions: saved region 4377:9755 - closest 5' read 15780 ( +2638) 1739:9753 ( -2) saved region 4377:9755 - closest 3' read 229085 ( -151) 4528:11324 ( +1569) search for confused edges: discard region 4377:9755 - no confusion in best edges Annotating repeats in reads for tig 57/113047. Annotated with 114 overlaps. Scan reads to discard spanned repeats. discard region 3023:4068 - contained in read 288045 125- 4998 thickest edges to the repeat regions: saved region 4384:10462 - closest 5' read 278292 ( +0) 4384:9581 ( -881) saved region 4384:10462 - closest 3' read 288976 ( -3427) 7811:23815 (+13353) search for confused edges: tig 57 read 558525 pos 3023-9467 IS confused by 3' edge to read 171455 - best edge read 288975 len 1538 erate 0.0600 score 1445.72 - alt edge len 1406 erate 0.0371 score 1353.84 - absdiff 91.88 percdiff 6.5641 tig 57 read 558525 pos 3023-9467 IS confused by 3' edge to read 514099 - best edge read 288975 len 1538 erate 0.0600 score 1445.72 - alt edge len 1287 erate 0.0406 score 1234.75 - absdiff 210.97 percdiff 15.7414 tig 57 read 558525 pos 3023-9467 IS confused by 3' edge to read 514100 - best edge read 288975 len 1538 erate 0.0600 score 1445.72 - alt edge len 1278 erate 0.0458 score 1219.47 - absdiff 226.25 percdiff 16.9783 saved region 4384:10462 - 3 best edges are potentially confused break tig 57 into up to 3 pieces: 0 3884 unique (length 3884) 3884 10962 repeat (length 7078) 10962 47450 unique (length 36488) Creating Unitig 113091 Creating Unitig 113092 Creating Unitig 113093 For tig 57 unique region 0 3884 - 0/ 22 reads repeat/unique - unitig 113091 created. For tig 57 repeat region 3884 10962 - 9/ 0 reads repeat/unique - unitig 113092 created. For tig 57 unique region 10962 47450 - 0/ 55 reads repeat/unique - unitig 113093 created. Annotating repeats in reads for tig 58/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 60/113047. Annotated with 267 overlaps. Scan reads to discard spanned repeats. discard region 5752:6401 - contained in read 37904 3491- 9935 discard region 15444:19570 - contained in read 696064 9786- 20245 discard region 23181:23807 - contained in read 592377 19335- 27105 discard region 38256:39983 - contained in read 397295 34808- 43706 discard region 59088:60024 - contained in read 642704 47318- 62696 thickest edges to the repeat regions: saved region 8582:11784 - closest 5' read 296718 ( +3233) 5349:11055 ( -729) saved region 8582:11784 - closest 3' read 696064 ( -1204) 9786:20245 ( +8461) saved region 28964:37461 - closest read 598999 ( +0) 28964:38120 ( +659) (contained) saved region 28964:37461 - closest 5' read 598999 ( +0) 28964:38120 ( +659) saved region 28964:37461 - closest 3' read 598999 ( +0) 28964:38120 ( +659) saved region 45625:54611 - closest 5' read 43874 ( +1239) 44386:52583 ( -2028) saved region 45625:54611 - closest 3' read 642704 ( -1693) 47318:62696 ( +8085) search for confused edges: tig 60 read 43874 pos 44386-52583 IS confused by 5' edge to read 496405 - best edge read 642704 len 5131 erate 0.0726 score 4758.49 - alt edge len 5017 erate 0.0534 score 4749.09 - absdiff 9.40 percdiff 0.1977 discard region 8582:11784 - no confusion in best edges discard region 28964:37461 - no confusion in best edges saved region 45625:54611 - 1 best edges are potentially confused break tig 60 into up to 3 pieces: 0 45125 unique (length 45125) 45125 55111 repeat (length 9986) 55111 64083 unique (length 8972) Creating Unitig 113094 Creating Unitig 113095 Creating Unitig 113096 For tig 60 unique region 0 45125 - 0/ 91 reads repeat/unique - unitig 113094 created. For tig 60 repeat region 45125 55111 - 33/ 0 reads repeat/unique - unitig 113095 created. For tig 60 unique region 55111 64083 - 0/ 8 reads repeat/unique - unitig 113096 created. Annotating repeats in reads for tig 62/113047. Annotated with 99 overlaps. Scan reads to discard spanned repeats. discard region 2100:8430 - contained in read 569033 130- 8430 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 66/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 7202:7724 - contained in read 311419 2640- 11088 discard region 32380:33688 - contained in read 173091 27577- 36167 thickest edges to the repeat regions: saved region 13485:17849 - closest read 166560 ( +93) 13392:18400 ( +551) (contained) saved region 13485:17849 - closest read 236295 ( +86) 13399:23196 ( +5347) (contained) saved region 13485:17849 - closest 5' read 236295 ( +86) 13399:23196 ( +5347) saved region 13485:17849 - closest 3' read 166560 ( +93) 13392:18400 ( +551) search for confused edges: discard region 13485:17849 - no confusion in best edges Annotating repeats in reads for tig 67/113047. Annotated with 366 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6561:30128 - closest 5' read 341584 ( +1455) 5106:17083 (-13045) saved region 6561:30128 - closest 3' read 306567 (-19159) 25720:31469 ( +1341) saved region 36004:40660 - closest 5' read 590761 ( +0) 36004:40263 ( -397) saved region 36004:40660 - closest 3' read 81502 ( -1108) 37112:41941 ( +1281) search for confused edges: tig 67 read 341584 pos 5106-17083 NOT confused by 3' edge to read 473487 - best edge read 620091 len 9434 erate 0.0275 score 9174.57 - alt edge len 2990 erate 0.0244 score 2917.04 - absdiff 6257.52 percdiff 103.5019 tig 67 read 341584 pos 5106-17083 NOT confused by 3' edge to read 473490 - best edge read 620091 len 9434 erate 0.0275 score 9174.57 - alt edge len 2989 erate 0.0211 score 2925.93 - absdiff 6248.63 percdiff 103.2789 tig 67 read 620091 pos 7605-19374 NOT confused by 5' edge to read 437395 - best edge read 533340 len 11406 erate 0.0126 score 11262.28 - alt edge len 1411 erate 0.0650 score 1319.29 - absdiff 9943.00 percdiff 158.0566 tig 67 read 620091 pos 7605-19374 NOT confused by 3' edge to read 577504 - best edge read 341584 len 9297 erate 0.0275 score 9041.33 - alt edge len 1667 erate 0.0328 score 1612.32 - absdiff 7429.01 percdiff 139.4641 tig 67 read 533340 pos 7787-20790 NOT confused by 5' edge to read 577504 - best edge read 620091 len 11423 erate 0.0126 score 11279.07 - alt edge len 1495 erate 0.0323 score 1446.71 - absdiff 9832.36 percdiff 154.5266 tig 67 read 655960 pos 9949-20894 NOT confused by 5' edge to read 161482 - best edge read 379496 len 5699 erate 0.0289 score 5534.30 - alt edge len 786 erate 0.0407 score 754.01 - absdiff 4780.29 percdiff 152.0374 tig 67 read 655960 pos 9949-20894 NOT confused by 3' edge to read 559084 - best edge read 533340 len 10661 erate 0.0154 score 10496.82 - alt edge len 3524 erate 0.0270 score 3428.85 - absdiff 7067.97 percdiff 101.5099 tig 67 read 128517 pos 15167-23671 IS confused by 3' edge to read 20290 - best edge read 198702 len 2251 erate 0.0613 score 2113.01 - alt edge len 1590 erate 0.0566 score 1500.01 - absdiff 613.01 percdiff 33.9333 tig 67 read 128517 pos 15167-23671 IS confused by 3' edge to read 20294 - best edge read 198702 len 2251 erate 0.0613 score 2113.01 - alt edge len 1581 erate 0.0544 score 1494.99 - absdiff 618.02 percdiff 34.2583 tig 67 read 128517 pos 15167-23671 IS confused by 3' edge to read 393747 - best edge read 198702 len 2251 erate 0.0613 score 2113.01 - alt edge len 1624 erate 0.0560 score 1533.06 - absdiff 579.96 percdiff 31.8128 tig 67 read 379496 pos 15181-23141 NOT confused by 3' edge to read 20290 - best edge read 470705 len 4399 erate 0.0462 score 4195.77 - alt edge len 1667 erate 0.0474 score 1587.98 - absdiff 2607.78 percdiff 90.1762 tig 67 read 379496 pos 15181-23141 NOT confused by 3' edge to read 20294 - best edge read 470705 len 4399 erate 0.0462 score 4195.77 - alt edge len 1659 erate 0.0476 score 1580.03 - absdiff 2615.73 percdiff 90.5757 tig 67 read 379496 pos 15181-23141 NOT confused by 3' edge to read 393747 - best edge read 470705 len 4399 erate 0.0462 score 4195.77 - alt edge len 1704 erate 0.0523 score 1614.88 - absdiff 2580.89 percdiff 88.8330 tig 67 read 470705 pos 18904-28697 NOT confused by 3' edge to read 24806 - best edge read 198702 len 7554 erate 0.0460 score 7206.52 - alt edge len 4372 erate 0.0656 score 4085.20 - absdiff 3121.32 percdiff 55.2851 tig 67 read 470705 pos 18904-28697 NOT confused by 3' edge to read 24809 - best edge read 198702 len 7554 erate 0.0460 score 7206.52 - alt edge len 4378 erate 0.0621 score 4106.13 - absdiff 3100.39 percdiff 54.8128 tig 67 read 470705 pos 18904-28697 NOT confused by 5' edge to read 116762 - best edge read 379496 len 4467 erate 0.0462 score 4260.62 - alt edge len 1482 erate 0.0368 score 1427.46 - absdiff 2833.16 percdiff 99.6174 tig 67 read 470705 pos 18904-28697 NOT confused by 3' edge to read 453138 - best edge read 198702 len 7554 erate 0.0460 score 7206.52 - alt edge len 1745 erate 0.0413 score 1672.93 - absdiff 5533.58 percdiff 124.6380 tig 67 read 198702 pos 21205-30078 NOT confused by 3' edge to read 537499 - best edge read 470705 len 7569 erate 0.0460 score 7220.83 - alt edge len 4014 erate 0.0353 score 3872.31 - absdiff 3348.52 percdiff 60.3711 tig 67 read 198702 pos 21205-30078 NOT confused by 3' edge to read 545480 - best edge read 470705 len 7569 erate 0.0460 score 7220.83 - alt edge len 2974 erate 0.0489 score 2828.57 - absdiff 4392.25 percdiff 87.4133 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 18083 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 1658 erate 0.0299 score 1608.43 - absdiff 1257.07 percdiff 56.1954 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 64084 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 2959 erate 0.0346 score 2856.62 - absdiff 8.88 percdiff 0.3103 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 491252 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 2936 erate 0.0335 score 2837.64 - absdiff 27.85 percdiff 0.9767 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 688697 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 2553 erate 0.0489 score 2428.16 - absdiff 437.34 percdiff 16.5231 tig 67 read 430444 pos 27016-33553 IS confused by 3' edge to read 688698 - best edge read 198702 len 2959 erate 0.0316 score 2865.50 - alt edge len 1222 erate 0.0704 score 1135.97 - absdiff 1729.52 percdiff 86.4445 tig 67 read 92799 pos 32074-38792 IS confused by 3' edge to read 393383 - best edge read 81502 len 1664 erate 0.0668 score 1552.84 - alt edge len 562 erate 0.0605 score 528.00 - absdiff 1024.85 percdiff 98.5029 saved region 6561:30128 - 8 best edges are potentially confused saved region 36004:40660 - 1 best edges are potentially confused break tig 67 into up to 5 pieces: 0 6061 unique (length 6061) 6061 30628 repeat (length 24567) 30628 35504 unique (length 4876) 35504 41160 repeat (length 5656) 41160 48615 unique (length 7455) Creating Unitig 113097 Creating Unitig 113098 Creating Unitig 113099 Creating Unitig 113100 Creating Unitig 113101 For tig 67 unique region 0 6061 - 0/ 13 reads repeat/unique - unitig 113097 created. For tig 67 repeat region 6061 30628 - 234/ 0 reads repeat/unique - unitig 113098 created. For tig 67 unique region 30628 35504 - 0/ 22 reads repeat/unique - unitig 113099 created. For tig 67 repeat region 35504 41160 - 10/ 0 reads repeat/unique - unitig 113100 created. For tig 67 unique region 41160 48615 - 0/ 6 reads repeat/unique - unitig 113101 created. Annotating repeats in reads for tig 68/113047. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 0:1187 - contained in read 437395 0- 4644 discard region 12826:17210 - contained in read 491252 11440- 17210 thickest edges to the repeat regions: saved region 1841:9087 - closest 5' read 437395 ( +1841) 0:4644 ( -4443) saved region 1841:9087 - closest 3' read 537500 ( -606) 2447:9087 ( +0) search for confused edges: tig 68 read 135451 pos 1892-5752 IS confused by 3' edge to read 628982 - best edge read 437395 len 2723 erate 0.0448 score 2601.01 - alt edge len 1293 erate 0.0606 score 1214.64 - absdiff 1386.37 percdiff 72.6673 tig 68 read 537499 pos 1964-9022 NOT confused by 3' edge to read 628982 - best edge read 135451 len 3705 erate 0.0424 score 3547.91 - alt edge len 1224 erate 0.0712 score 1136.85 - absdiff 2411.06 percdiff 102.9319 tig 68 read 18083 pos 5691-15944 IS confused by 5' edge to read 545480 - best edge read 537499 len 3287 erate 0.0432 score 3145.00 - alt edge len 2260 erate 0.0638 score 2115.81 - absdiff 1029.19 percdiff 39.1266 saved region 1841:9087 - 2 best edges are potentially confused break tig 68 into up to 3 pieces: 0 1341 unique (length 1341) 1341 9587 repeat (length 8246) 9587 17210 unique (length 7623) Creating Unitig 113102 Creating Unitig 113103 Creating Unitig 113104 For tig 68 unique region 0 1341 - 0/ 1 reads repeat/unique - unitig 113102 created. For tig 68 repeat region 1341 9587 - 15/ 0 reads repeat/unique - unitig 113103 created. For tig 68 unique region 9587 17210 - 0/ 8 reads repeat/unique - unitig 113104 created. Annotating repeats in reads for tig 71/113047. Annotated with 824 overlaps. Scan reads to discard spanned repeats. discard region 2445:0 - contained in read 112436 0- 6699 discard region 56375:56991 - contained in read 178206 51073- 58145 thickest edges to the repeat regions: saved region 8817:26751 - closest 5' read 667975 ( +0) 8817:20604 ( -6147) saved region 8817:26751 - closest 3' read 18089 ( -2765) 11582:26751 ( +0) saved region 30499:56320 - closest 5' read 91411 ( +0) 30499:54774 ( -1546) saved region 30499:56320 - closest 3' read 88666 (-17256) 47755:57165 ( +845) search for confused edges: tig 71 read 577295 pos 9044-18743 NOT confused by 5' edge to read 10642 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 1075 erate 0.0598 score 1010.72 - absdiff 6418.93 percdiff 152.1009 tig 71 read 577295 pos 9044-18743 IS confused by 5' edge to read 122819 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 6145 erate 0.0288 score 5968.02 - absdiff 1461.62 percdiff 21.8190 tig 71 read 577295 pos 9044-18743 NOT confused by 5' edge to read 234113 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 1121 erate 0.0564 score 1057.78 - absdiff 6371.87 percdiff 150.1485 tig 71 read 577295 pos 9044-18743 NOT confused by 5' edge to read 361190 - best edge read 702839 len 7976 erate 0.0685 score 7429.64 - alt edge len 1787 erate 0.0505 score 1696.76 - absdiff 5732.89 percdiff 125.6330 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 10642 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 1750 erate 0.0486 score 1664.95 - absdiff 5564.27 percdiff 125.1217 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 72132 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 1021 erate 0.0539 score 965.97 - absdiff 6263.25 percdiff 152.8519 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 72135 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 1016 erate 0.0653 score 949.66 - absdiff 6279.56 percdiff 153.5557 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 122819 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 4165 erate 0.0277 score 4049.63 - absdiff 3179.59 percdiff 56.3815 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 361190 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 2473 erate 0.0352 score 2385.95 - absdiff 4843.27 percdiff 100.7422 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 576330 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 712 erate 0.0478 score 677.97 - absdiff 6551.25 percdiff 165.7038 tig 71 read 702839 pos 9482-18342 NOT confused by 3' edge to read 576331 - best edge read 210514 len 7514 erate 0.0379 score 7229.22 - alt edge len 728 erate 0.0481 score 692.98 - absdiff 6536.24 percdiff 165.0106 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 79576 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 2378 erate 0.0678 score 2216.77 - absdiff 11712.55 percdiff 145.0822 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 206125 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1353 erate 0.0504 score 1284.81 - absdiff 12644.51 percdiff 166.2206 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 206401 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1374 erate 0.0512 score 1303.65 - absdiff 12625.67 percdiff 165.7676 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 397303 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1398 erate 0.0446 score 1335.65 - absdiff 12593.67 percdiff 165.0009 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 523060 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 744 erate 0.0581 score 700.77 - absdiff 13228.55 percdiff 180.8402 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 523062 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 744 erate 0.0608 score 698.76 - absdiff 13230.56 percdiff 180.8925 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 523063 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 744 erate 0.0608 score 698.76 - absdiff 13230.56 percdiff 180.8925 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 598696 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1236 erate 0.0525 score 1171.11 - absdiff 12758.21 percdiff 168.9781 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 598699 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 1238 erate 0.0605 score 1163.10 - absdiff 12766.22 percdiff 169.1739 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 660854 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 593 erate 0.0458 score 565.84 - absdiff 13363.48 percdiff 184.3854 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 663547 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 2342 erate 0.0730 score 2171.03 - absdiff 11758.29 percdiff 146.0625 tig 71 read 619136 pos 10785-25977 NOT confused by 5' edge to read 716092 - best edge read 18089 len 14202 erate 0.0192 score 13929.32 - alt edge len 2720 erate 0.0243 score 2653.90 - absdiff 11275.42 percdiff 135.9858 tig 71 read 210514 pos 11396-20436 NOT confused by 5' edge to read 122819 - best edge read 179052 len 8627 erate 0.0367 score 8310.39 - alt edge len 5568 erate 0.0298 score 5402.07 - absdiff 2908.32 percdiff 42.4186 tig 71 read 210514 pos 11396-20436 NOT confused by 5' edge to read 234113 - best edge read 179052 len 8627 erate 0.0367 score 8310.39 - alt edge len 501 erate 0.0383 score 481.81 - absdiff 7828.58 percdiff 178.0800 tig 71 read 210514 pos 11396-20436 NOT confused by 5' edge to read 361190 - best edge read 179052 len 8627 erate 0.0367 score 8310.39 - alt edge len 1186 erate 0.0443 score 1133.46 - absdiff 7176.93 percdiff 151.9916 tig 71 read 18089 pos 11582-26751 NOT confused by 5' edge to read 716092 - best edge read 179052 len 6567 erate 0.0245 score 6406.11 - alt edge len 884 erate 0.0352 score 852.88 - absdiff 5553.23 percdiff 153.0027 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 35570 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2311 erate 0.0646 score 2161.71 - absdiff 6141.94 percdiff 117.3766 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 55464 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2563 erate 0.0525 score 2428.44 - absdiff 5875.20 percdiff 109.4885 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 79576 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2650 erate 0.0514 score 2513.79 - absdiff 5789.86 percdiff 107.0467 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 224425 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 1960 erate 0.0574 score 1847.50 - absdiff 6456.15 percdiff 127.2005 tig 71 read 179052 pos 11889-20671 NOT confused by 3' edge to read 663547 - best edge read 210514 len 8620 erate 0.0367 score 8303.65 - alt edge len 2614 erate 0.0545 score 2471.54 - absdiff 5832.11 percdiff 108.2508 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 35570 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1457 erate 0.0633 score 1364.77 - absdiff 234.90 percdiff 18.8322 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 224425 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1113 erate 0.0557 score 1051.01 - absdiff 78.87 percdiff 7.2327 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 397303 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 826 erate 0.0691 score 768.92 - absdiff 360.95 percdiff 38.0188 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 702839 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1028 erate 0.0539 score 972.59 - absdiff 157.28 percdiff 14.9618 tig 71 read 72132 pos 25210-31251 IS confused by 5' edge to read 717630 - best edge read 619136 len 1182 erate 0.0441 score 1129.87 - alt edge len 1180 erate 0.0714 score 1095.75 - absdiff 34.13 percdiff 3.0666 saved region 8817:26751 - 6 best edges are potentially confused discard region 30499:56320 - no confusion in best edges break tig 71 into up to 3 pieces: 0 8317 unique (length 8317) 8317 27251 repeat (length 18934) 27251 59024 unique (length 31773) Creating Unitig 113105 Creating Unitig 113106 Creating Unitig 113107 For tig 71 unique region 0 8317 - 0/ 23 reads repeat/unique - unitig 113105 created. For tig 71 repeat region 8317 27251 - 169/ 0 reads repeat/unique - unitig 113106 created. For tig 71 unique region 27251 59024 - 0/ 44 reads repeat/unique - unitig 113107 created. Annotating repeats in reads for tig 72/113047. Annotated with 176 overlaps. Scan reads to discard spanned repeats. discard region 0:1299 - contained in read 574084 0- 6739 discard region 3100:12236 - contained in read 80005 2252- 12236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 73/113047. Annotated with 1929 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 962:20101 - closest 5' read 113253 ( +962) 0:13384 ( -6717) saved region 962:20101 - closest 3' read 502051 ( -8226) 9188:20101 ( +0) search for confused edges: tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 21508 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 942 erate 0.0520 score 893.02 - absdiff 4533.99 percdiff 143.4802 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 52738 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1949 erate 0.0439 score 1863.44 - absdiff 3563.56 percdiff 97.7599 tig 73 read 113253 pos 0-13384 IS confused by 5' edge to read 56594 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 4666 erate 0.0647 score 4364.11 - absdiff 1062.89 percdiff 21.7114 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 130671 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1879 erate 0.0293 score 1823.95 - absdiff 3603.06 percdiff 99.3817 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 140415 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 936 erate 0.0300 score 907.92 - absdiff 4519.08 percdiff 142.6721 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 172419 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1677 erate 0.0491 score 1594.66 - absdiff 3832.34 percdiff 109.1577 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 172422 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1682 erate 0.0599 score 1581.25 - absdiff 3845.75 percdiff 109.7493 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 230528 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 2933 erate 0.0503 score 2785.47 - absdiff 2641.53 percdiff 64.3298 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 230529 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 3169 erate 0.0451 score 3026.08 - absdiff 2400.92 percdiff 56.8059 tig 73 read 113253 pos 0-13384 IS confused by 5' edge to read 340795 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 5631 erate 0.0421 score 5393.93 - absdiff 33.07 percdiff 0.6112 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 536734 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1724 erate 0.0477 score 1641.77 - absdiff 3785.24 percdiff 107.0975 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 574860 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1264 erate 0.0514 score 1199.03 - absdiff 4227.97 percdiff 127.6170 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 638612 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1878 erate 0.0618 score 1761.94 - absdiff 3665.06 percdiff 101.9639 tig 73 read 113253 pos 0-13384 NOT confused by 5' edge to read 638614 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 1920 erate 0.0609 score 1803.07 - absdiff 3623.93 percdiff 100.2460 tig 73 read 113253 pos 0-13384 IS confused by 5' edge to read 682536 - best edge read 40822 len 5675 erate 0.0437 score 5427.00 - alt edge len 4732 erate 0.0379 score 4552.66 - absdiff 874.35 percdiff 17.5225 tig 73 read 664057 pos 2533-11080 NOT confused by 3' edge to read 51480 - best edge read 350785 len 7529 erate 0.0665 score 7028.32 - alt edge len 962 erate 0.0705 score 894.18 - absdiff 6134.14 percdiff 154.8537 tig 73 read 664057 pos 2533-11080 NOT confused by 5' edge to read 190042 - best edge read 664058 len 8432 erate 0.0310 score 8170.61 - alt edge len 2784 erate 0.0604 score 2615.85 - absdiff 5554.76 percdiff 102.9951 tig 73 read 664057 pos 2533-11080 NOT confused by 3' edge to read 230529 - best edge read 350785 len 7529 erate 0.0665 score 7028.32 - alt edge len 1105 erate 0.0662 score 1031.85 - absdiff 5996.47 percdiff 148.7927 tig 73 read 664057 pos 2533-11080 NOT confused by 5' edge to read 566357 - best edge read 664058 len 8432 erate 0.0310 score 8170.61 - alt edge len 769 erate 0.0501 score 730.47 - absdiff 7440.13 percdiff 167.1737 tig 73 read 664058 pos 2823-11368 NOT confused by 5' edge to read 51480 - best edge read 664057 len 8400 erate 0.0310 score 8139.60 - alt edge len 954 erate 0.0728 score 884.55 - absdiff 7255.05 percdiff 160.7919 tig 73 read 664058 pos 2823-11368 NOT confused by 5' edge to read 230529 - best edge read 664057 len 8400 erate 0.0310 score 8139.60 - alt edge len 1098 erate 0.0714 score 1019.60 - absdiff 7120.00 percdiff 155.4720 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 27915 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 2498 erate 0.0651 score 2335.38 - absdiff 4720.95 percdiff 100.5344 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 52738 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 2037 erate 0.0594 score 1916.00 - absdiff 4505.98 percdiff 108.0832 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 56594 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 3987 erate 0.0614 score 3742.20 - absdiff 3314.13 percdiff 61.3811 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 93171 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 3642 erate 0.0544 score 3443.88 - absdiff 3612.45 percdiff 68.8073 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 130671 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1964 erate 0.0474 score 1870.91 - absdiff 4551.08 percdiff 109.7585 tig 73 read 350785 pos 5270-13186 IS confused by 3' edge to read 140415 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 6789 erate 0.0534 score 6426.47 - absdiff 4.49 percdiff 0.0698 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 172419 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1758 erate 0.0552 score 1660.96 - absdiff 4761.02 percdiff 117.8042 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 172422 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1763 erate 0.0677 score 1643.64 - absdiff 4778.34 percdiff 118.4864 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 190042 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1874 erate 0.0512 score 1778.05 - absdiff 5278.28 percdiff 119.4940 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 196098 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1674 erate 0.0694 score 1557.82 - absdiff 5498.50 percdiff 127.6621 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 196101 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1738 erate 0.0725 score 1611.99 - absdiff 5444.33 percdiff 125.6144 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 230528 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 3025 erate 0.0587 score 2847.43 - absdiff 3574.55 percdiff 77.1257 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 230529 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1836 erate 0.0486 score 1746.77 - absdiff 5309.56 percdiff 120.6293 tig 73 read 350785 pos 5270-13186 IS confused by 3' edge to read 340795 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 5746 erate 0.0545 score 5432.84 - absdiff 989.14 percdiff 16.6875 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 422794 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 2671 erate 0.0569 score 2519.02 - absdiff 4537.31 percdiff 94.7706 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 536734 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1805 erate 0.0542 score 1707.17 - absdiff 4714.81 percdiff 115.9977 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 574860 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1348 erate 0.0619 score 1264.56 - absdiff 5157.42 percdiff 134.1936 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 590994 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1793 erate 0.0626 score 1680.76 - absdiff 5375.57 percdiff 123.0518 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 590995 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 1794 erate 0.0558 score 1693.89 - absdiff 5362.43 percdiff 122.5668 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 638612 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 1963 erate 0.0714 score 1822.84 - absdiff 4599.14 percdiff 111.5643 tig 73 read 350785 pos 5270-13186 NOT confused by 3' edge to read 638614 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 2006 erate 0.0705 score 1864.58 - absdiff 4557.40 percdiff 109.9951 tig 73 read 350785 pos 5270-13186 IS confused by 3' edge to read 682536 - best edge read 140414 len 6790 erate 0.0542 score 6421.98 - alt edge len 4866 erate 0.0477 score 4633.89 - absdiff 1788.09 percdiff 32.3464 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 716843 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 2940 erate 0.0388 score 2825.93 - absdiff 4230.40 percdiff 85.6161 tig 73 read 350785 pos 5270-13186 NOT confused by 5' edge to read 716844 - best edge read 664057 len 7559 erate 0.0665 score 7056.33 - alt edge len 3035 erate 0.0461 score 2895.09 - absdiff 4161.24 percdiff 83.6311 tig 73 read 78001 pos 5876-12960 NOT confused by 5' edge to read 130671 - best edge read 113252 len 6347 erate 0.0534 score 6008.07 - alt edge len 2493 erate 0.0632 score 2335.44 - absdiff 3672.63 percdiff 88.0355 tig 73 read 78001 pos 5876-12960 NOT confused by 5' edge to read 230529 - best edge read 113252 len 6347 erate 0.0534 score 6008.07 - alt edge len 3779 erate 0.0708 score 3511.45 - absdiff 2496.62 percdiff 52.4527 tig 73 read 398969 pos 5913-15555 NOT confused by 5' edge to read 66611 - best edge read 78001 len 5206 erate 0.0585 score 4901.45 - alt edge len 2730 erate 0.0607 score 2564.29 - absdiff 2337.16 percdiff 62.6103 tig 73 read 398969 pos 5913-15555 NOT confused by 5' edge to read 130671 - best edge read 78001 len 5206 erate 0.0585 score 4901.45 - alt edge len 742 erate 0.0424 score 710.54 - absdiff 4190.91 percdiff 149.3556 tig 73 read 398969 pos 5913-15555 NOT confused by 3' edge to read 196098 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 547 erate 0.0585 score 515.00 - absdiff 2124.91 percdiff 134.7048 tig 73 read 398969 pos 5913-15555 IS confused by 3' edge to read 196101 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 610 erate 0.0738 score 564.98 - absdiff 2074.93 percdiff 129.4850 tig 73 read 398969 pos 5913-15555 IS confused by 3' edge to read 230529 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 2673 erate 0.0645 score 2500.59 - absdiff 139.32 percdiff 5.4203 tig 73 read 398969 pos 5913-15555 IS confused by 3' edge to read 590995 - best edge read 350785 len 2831 erate 0.0675 score 2639.91 - alt edge len 660 erate 0.0742 score 611.03 - absdiff 2028.88 percdiff 124.8182 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 93171 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2705 erate 0.0574 score 2549.73 - absdiff 3879.82 percdiff 86.4171 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 130671 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 519 erate 0.0717 score 481.79 - absdiff 5947.76 percdiff 172.1161 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 190042 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 902 erate 0.0744 score 834.89 - absdiff 5594.66 percdiff 154.0286 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 196098 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 700 erate 0.0415 score 670.95 - absdiff 5758.60 percdiff 162.2027 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 196101 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 764 erate 0.0485 score 726.95 - absdiff 5702.60 percdiff 159.3686 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 230529 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 864 erate 0.0461 score 824.17 - absdiff 5605.38 percdiff 154.5519 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 422794 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 1731 erate 0.0602 score 1626.79 - absdiff 4802.75 percdiff 119.2292 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 590994 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 819 erate 0.0596 score 770.19 - absdiff 5659.36 percdiff 157.2102 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 590995 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 820 erate 0.0523 score 777.11 - absdiff 5652.43 percdiff 156.8669 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 682536 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2523 erate 0.0569 score 2379.44 - absdiff 4050.11 percdiff 91.9540 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 716843 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2005 erate 0.0404 score 1924.00 - absdiff 4505.55 percdiff 107.8716 tig 73 read 140414 pos 6283-14790 NOT confused by 3' edge to read 716844 - best edge read 350785 len 6798 erate 0.0542 score 6429.55 - alt edge len 2099 erate 0.0418 score 2011.26 - absdiff 4418.29 percdiff 104.6887 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 93171 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1692 erate 0.0382 score 1627.37 - absdiff 3866.58 percdiff 108.5918 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 161947 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1692 erate 0.0547 score 1599.45 - absdiff 3894.50 percdiff 109.8063 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 422794 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 719 erate 0.0499 score 683.12 - absdiff 4810.82 percdiff 155.7640 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 504829 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1573 erate 0.0691 score 1464.31 - absdiff 4029.64 percdiff 115.8233 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 504830 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1586 erate 0.0686 score 1477.20 - absdiff 4016.74 percdiff 115.2391 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 516253 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 663 erate 0.0682 score 617.78 - absdiff 4876.16 percdiff 159.5673 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 516254 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 661 erate 0.0720 score 613.41 - absdiff 4880.54 percdiff 159.8249 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 595206 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1856 erate 0.0738 score 1719.03 - absdiff 3774.92 percdiff 104.6702 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 606197 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1606 erate 0.0654 score 1500.97 - absdiff 3992.98 percdiff 114.1680 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 606199 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1606 erate 0.0642 score 1502.89 - absdiff 3991.05 percdiff 114.0815 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 716843 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 991 erate 0.0612 score 930.35 - absdiff 4563.59 percdiff 142.0730 tig 73 read 40822 pos 7182-14689 NOT confused by 3' edge to read 716844 - best edge read 113253 len 5745 erate 0.0437 score 5493.94 - alt edge len 1085 erate 0.0622 score 1017.51 - absdiff 4476.43 percdiff 137.4940 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 9364 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 843 erate 0.0689 score 784.92 - absdiff 7381.41 percdiff 164.9248 tig 73 read 113252 pos 7267-16198 IS confused by 5' edge to read 66891 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 4442 erate 0.0664 score 4147.05 - absdiff 1918.15 percdiff 37.5657 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 110652 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 6136 erate 0.0667 score 5726.73 - absdiff 2439.60 percdiff 35.1197 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 140415 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1582 erate 0.0637 score 1481.23 - absdiff 4583.97 percdiff 121.4873 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 161947 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 1245 erate 0.0582 score 1172.54 - absdiff 6993.79 percdiff 149.7780 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 196098 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1613 erate 0.0590 score 1517.83 - absdiff 4547.37 percdiff 119.9353 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 196101 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1677 erate 0.0615 score 1573.86 - absdiff 4491.34 percdiff 117.5886 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 230529 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1766 erate 0.0610 score 1658.27 - absdiff 4406.93 percdiff 114.1177 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 340795 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 979 erate 0.0504 score 929.66 - absdiff 7236.67 percdiff 159.1179 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 590994 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1728 erate 0.0671 score 1612.05 - absdiff 4453.15 percdiff 116.0089 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 590995 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1729 erate 0.0612 score 1623.19 - absdiff 4442.02 percdiff 115.5513 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 601472 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1774 erate 0.0638 score 1660.82 - absdiff 4404.38 percdiff 114.0143 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 601474 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1784 erate 0.0595 score 1677.85 - absdiff 4387.35 percdiff 113.3235 tig 73 read 113252 pos 7267-16198 NOT confused by 5' edge to read 601475 - best edge read 78001 len 6406 erate 0.0532 score 6065.20 - alt edge len 1793 erate 0.0677 score 1671.61 - absdiff 4393.59 percdiff 113.5761 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 606199 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 1027 erate 0.0652 score 960.04 - absdiff 7206.29 percdiff 157.9224 tig 73 read 113252 pos 7267-16198 NOT confused by 3' edge to read 629732 - best edge read 113253 len 8588 erate 0.0491 score 8166.33 - alt edge len 955 erate 0.0565 score 901.04 - absdiff 7265.29 percdiff 160.2512 saved region 962:20101 - 10 best edges are potentially confused break tig 73 into up to 3 pieces: 0 462 unique (length 462) 462 20601 repeat (length 20139) 20601 40111 unique (length 19510) Creating Unitig 113108 Creating Unitig 113109 Creating Unitig 113110 For tig 73 unique region 0 462 - 0/ 1 reads repeat/unique - unitig 113108 created. For tig 73 repeat region 462 20601 - 95/ 0 reads repeat/unique - unitig 113109 created. For tig 73 unique region 20601 40111 - 0/ 35 reads repeat/unique - unitig 113110 created. Annotating repeats in reads for tig 74/113047. Annotated with 99 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 658:12783 - closest 5' read 568372 ( +89) 569:4023 ( -8760) saved region 658:12783 - closest 3' read 583787 ( -1591) 2249:12783 ( +0) search for confused edges: tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 429334 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 619 erate 0.0535 score 585.88 - absdiff 6299.76 percdiff 168.6338 tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 623659 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 558 erate 0.0559 score 526.81 - absdiff 6358.83 percdiff 171.5717 tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 656334 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 566 erate 0.0673 score 527.91 - absdiff 6357.73 percdiff 171.5166 tig 74 read 634002 pos 825-8789 NOT confused by 5' edge to read 656335 - best edge read 670461 len 7019 erate 0.0190 score 6885.64 - alt edge len 532 erate 0.0546 score 502.95 - absdiff 6382.69 percdiff 172.7714 discard region 658:12783 - no confusion in best edges Annotating repeats in reads for tig 77/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 23023:27496 - contained in read 627191 18195- 28241 discard region 27887:28528 - contained in read 404113 23034- 30462 discard region 30895:31546 - contained in read 306859 25804- 33572 thickest edges to the repeat regions: saved region 13362:19053 - closest read 86810 ( +1052) 12310:19053 ( +0) (contained) saved region 13362:19053 - closest 5' read 86810 ( +1052) 12310:19053 ( +0) saved region 13362:19053 - closest 3' read 86810 ( +1052) 12310:19053 ( +0) search for confused edges: discard region 13362:19053 - no confusion in best edges Annotating repeats in reads for tig 78/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 0:895 - contained in read 454809 0- 5384 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 80/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2468:0 - contained in read 190267 0- 6577 thickest edges to the repeat regions: saved region 16195:21900 - closest read 240880 ( +1145) 15050:21900 ( +0) (contained) saved region 16195:21900 - closest 5' read 240880 ( +1145) 15050:21900 ( +0) saved region 16195:21900 - closest 3' read 240880 ( +1145) 15050:21900 ( +0) search for confused edges: tig 80 read 302484 pos 19615-27291 IS confused by 3' edge to read 370094 - best edge read 240880 len 2273 erate 0.0540 score 2150.26 - alt edge len 1834 erate 0.0648 score 1715.16 - absdiff 435.10 percdiff 22.5125 saved region 16195:21900 - 1 best edges are potentially confused break tig 80 into up to 3 pieces: 0 15695 unique (length 15695) 15695 22400 repeat (length 6705) 22400 41655 unique (length 19255) Creating Unitig 113111 Creating Unitig 113112 Creating Unitig 113113 For tig 80 unique region 0 15695 - 0/ 48 reads repeat/unique - unitig 113111 created. For tig 80 repeat region 15695 22400 - 5/ 0 reads repeat/unique - unitig 113112 created. For tig 80 unique region 22400 41655 - 0/ 52 reads repeat/unique - unitig 113113 created. Annotating repeats in reads for tig 82/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 40534:41966 - contained in read 714666 35117- 43793 discard region 42317:43156 - contained in read 714666 35117- 43793 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 84/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 16781:17936 - contained in read 20816 10218- 19400 discard region 19246:19847 - contained in read 583001 16450- 22658 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 87/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3762:3044 - contained in read 356025 0- 4011 discard region 4561:3166 - contained in read 356025 0- 4011 discard region 4605:3449 - contained in read 356025 0- 4011 thickest edges to the repeat regions: saved region 22435:26669 - closest read 163535 ( +0) 22435:28068 ( +1399) (contained) saved region 22435:26669 - closest 5' read 163535 ( +0) 22435:28068 ( +1399) saved region 22435:26669 - closest 3' read 163535 ( +0) 22435:28068 ( +1399) search for confused edges: discard region 22435:26669 - no confusion in best edges Annotating repeats in reads for tig 88/113047. Annotated with 165 overlaps. Scan reads to discard spanned repeats. discard region 26235:34454 - contained in read 140145 17063- 34454 thickest edges to the repeat regions: saved region 17033:24910 - closest 5' read 118872 ( +0) 17033:18698 ( -6212) saved region 17033:24910 - closest 3' read 605165 ( -9) 17042:25705 ( +795) search for confused edges: discard region 17033:24910 - no confusion in best edges Annotating repeats in reads for tig 89/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8331 - closest 5' read 647211 ( +0) 0:8206 ( -125) saved region 0:8331 - closest 3' read 539085 ( -2160) 2160:8331 ( +0) search for confused edges: tig 89 read 647211 pos 0-8206 IS confused by 3' edge to read 243763 - best edge read 539085 len 6033 erate 0.0102 score 5971.46 - alt edge len 5704 erate 0.0124 score 5633.27 - absdiff 338.19 percdiff 5.8285 tig 89 read 647211 pos 0-8206 NOT confused by 3' edge to read 399098 - best edge read 539085 len 6033 erate 0.0102 score 5971.46 - alt edge len 2114 erate 0.0410 score 2027.33 - absdiff 3944.14 percdiff 98.6184 tig 89 read 111829 pos 2233-12239 NOT confused by 3' edge to read 121373 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 938 erate 0.0128 score 925.99 - absdiff 4702.78 percdiff 143.4919 tig 89 read 111829 pos 2233-12239 IS confused by 3' edge to read 121374 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 5402 erate 0.0169 score 5310.71 - absdiff 318.06 percdiff 5.8150 tig 89 read 111829 pos 2233-12239 IS confused by 3' edge to read 549966 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 3592 erate 0.0160 score 3534.53 - absdiff 2094.24 percdiff 45.7093 tig 89 read 111829 pos 2233-12239 NOT confused by 3' edge to read 605308 - best edge read 539085 len 5957 erate 0.0551 score 5628.77 - alt edge len 1168 erate 0.0180 score 1146.98 - absdiff 4481.79 percdiff 132.2893 saved region 0:8331 - 3 best edges are potentially confused break tig 89 into up to 2 pieces: 0 8831 repeat (length 8831) 8831 12239 unique (length 3408) Creating Unitig 113114 Creating Unitig 113115 For tig 89 repeat region 0 8831 - 17/ 0 reads repeat/unique - unitig 113114 created. For tig 89 unique region 8831 12239 - 0/ 2 reads repeat/unique - unitig 113115 created. Annotating repeats in reads for tig 90/113047. Annotated with 309 overlaps. Scan reads to discard spanned repeats. discard region 603:3791 - contained in read 642385 0- 5883 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 91/113047. Annotated with 1274 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:20249 - closest 5' read 98427 ( +0) 0:8640 (-11609) saved region 0:20249 - closest 3' read 505572 (-11437) 11437:25636 ( +5387) search for confused edges: tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 36467 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3267 erate 0.0350 score 3152.65 - absdiff 5091.38 percdiff 89.3484 tig 91 read 132715 pos 170-9606 IS confused by 5' edge to read 98426 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 6463 erate 0.0312 score 6261.35 - absdiff 1982.68 percdiff 27.3372 tig 91 read 132715 pos 170-9606 NOT confused by 3' edge to read 118971 - best edge read 542862 len 8104 erate 0.0474 score 7719.87 - alt edge len 634 erate 0.0473 score 604.01 - absdiff 7115.86 percdiff 170.9745 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 377979 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3356 erate 0.0389 score 3225.45 - absdiff 5018.59 percdiff 87.5119 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 483829 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3278 erate 0.0693 score 3050.83 - absdiff 5193.20 percdiff 91.9568 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 483830 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3285 erate 0.0670 score 3064.91 - absdiff 5179.13 percdiff 91.5936 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 505572 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3657 erate 0.0349 score 3529.37 - absdiff 4714.67 percdiff 80.0901 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 505574 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 3021 erate 0.0360 score 2912.24 - absdiff 5331.79 percdiff 95.5837 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 510754 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 6337 erate 0.0461 score 6044.86 - absdiff 2199.17 percdiff 30.7816 tig 91 read 132715 pos 170-9606 IS confused by 5' edge to read 531680 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 6460 erate 0.0298 score 6267.49 - absdiff 1976.55 percdiff 27.2410 tig 91 read 132715 pos 170-9606 NOT confused by 5' edge to read 621497 - best edge read 98427 len 8414 erate 0.0202 score 8244.04 - alt edge len 1123 erate 0.0653 score 1049.67 - absdiff 7194.37 percdiff 154.8224 tig 91 read 132715 pos 170-9606 NOT confused by 3' edge to read 644969 - best edge read 542862 len 8104 erate 0.0474 score 7719.87 - alt edge len 561 erate 0.0491 score 533.45 - absdiff 7186.42 percdiff 174.1459 tig 91 read 542862 pos 1394-9745 NOT confused by 5' edge to read 98426 - best edge read 132715 len 8087 erate 0.0474 score 7703.68 - alt edge len 5247 erate 0.0714 score 4872.36 - absdiff 2831.31 percdiff 45.0271 tig 91 read 542862 pos 1394-9745 NOT confused by 3' edge to read 118971 - best edge read 421121 len 8041 erate 0.0314 score 7788.51 - alt edge len 795 erate 0.0227 score 776.95 - absdiff 7011.56 percdiff 163.7169 tig 91 read 542862 pos 1394-9745 NOT confused by 5' edge to read 531680 - best edge read 132715 len 8087 erate 0.0474 score 7703.68 - alt edge len 5244 erate 0.0694 score 4880.07 - absdiff 2823.61 percdiff 44.8771 tig 91 read 542862 pos 1394-9745 NOT confused by 3' edge to read 644969 - best edge read 421121 len 8041 erate 0.0314 score 7788.51 - alt edge len 711 erate 0.0527 score 673.53 - absdiff 7114.98 percdiff 168.1623 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 36467 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1871 erate 0.0327 score 1809.82 - absdiff 5969.01 percdiff 124.5016 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 98426 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 5059 erate 0.0371 score 4871.31 - absdiff 2907.52 percdiff 45.9681 tig 91 read 421121 pos 1583-10055 NOT confused by 3' edge to read 118971 - best edge read 24956 len 7983 erate 0.0419 score 7648.51 - alt edge len 1112 erate 0.0388 score 1068.85 - absdiff 6579.66 percdiff 150.9552 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 377979 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1960 erate 0.0338 score 1893.75 - absdiff 5885.07 percdiff 121.6857 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 483829 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 2195 erate 0.0698 score 2041.79 - absdiff 5737.04 percdiff 116.8366 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 483830 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 2202 erate 0.0642 score 2060.63 - absdiff 5718.20 percdiff 116.2299 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 505572 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1947 erate 0.0305 score 1887.62 - absdiff 5891.21 percdiff 121.8899 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 505574 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 2250 erate 0.0303 score 2181.82 - absdiff 5597.00 percdiff 112.3822 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 510754 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 4934 erate 0.0480 score 4697.17 - absdiff 3081.66 percdiff 49.4014 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 531680 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 5056 erate 0.0367 score 4870.44 - absdiff 2908.38 percdiff 45.9850 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 553106 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 4812 erate 0.0655 score 4496.81 - absdiff 3282.01 percdiff 53.4720 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 553107 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 4817 erate 0.0584 score 4535.69 - absdiff 3243.14 percdiff 52.6718 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 621497 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1300 erate 0.0639 score 1216.93 - absdiff 6561.90 percdiff 145.8887 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 621498 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 1306 erate 0.0545 score 1234.82 - absdiff 6544.00 percdiff 145.2021 tig 91 read 421121 pos 1583-10055 NOT confused by 5' edge to read 660755 - best edge read 542862 len 8031 erate 0.0314 score 7778.83 - alt edge len 5226 erate 0.0665 score 4878.47 - absdiff 2900.36 percdiff 45.8290 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 98426 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 4710 erate 0.0458 score 4494.28 - absdiff 3251.00 percdiff 53.1228 tig 91 read 24956 pos 1935-10706 NOT confused by 3' edge to read 118971 - best edge read 119745 len 6195 erate 0.0390 score 5953.39 - alt edge len 1695 erate 0.0541 score 1603.30 - absdiff 4350.09 percdiff 115.1322 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 377979 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 1600 erate 0.0534 score 1514.56 - absdiff 6230.72 percdiff 134.5751 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 505572 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 1900 erate 0.0476 score 1809.56 - absdiff 5935.72 percdiff 124.2453 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 505574 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 1890 erate 0.0468 score 1801.55 - absdiff 5943.73 percdiff 124.5174 tig 91 read 24956 pos 1935-10706 NOT confused by 5' edge to read 531680 - best edge read 421121 len 8084 erate 0.0419 score 7745.28 - alt edge len 4707 erate 0.0457 score 4491.89 - absdiff 3253.39 percdiff 53.1723 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 36467 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 1787 erate 0.0456 score 1705.51 - absdiff 6345.14 percdiff 130.0744 tig 91 read 119745 pos 4456-13122 NOT confused by 3' edge to read 98426 - best edge read 24956 len 6160 erate 0.0390 score 5919.76 - alt edge len 2238 erate 0.0569 score 2110.66 - absdiff 3809.10 percdiff 94.8668 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 118971 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 4056 erate 0.0496 score 3854.82 - absdiff 4195.83 percdiff 70.4857 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 377979 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 1874 erate 0.0499 score 1780.49 - absdiff 6270.16 percdiff 127.5572 tig 91 read 119745 pos 4456-13122 NOT confused by 3' edge to read 531680 - best edge read 24956 len 6160 erate 0.0390 score 5919.76 - alt edge len 2235 erate 0.0592 score 2102.69 - absdiff 3817.07 percdiff 95.1598 tig 91 read 119745 pos 4456-13122 NOT confused by 5' edge to read 621497 - best edge read 550563 len 8430 erate 0.0450 score 8050.65 - alt edge len 1528 erate 0.0542 score 1445.18 - absdiff 6605.47 percdiff 139.1235 tig 91 read 550563 pos 4720-16710 IS confused by 3' edge to read 36467 - best edge read 505572 len 5134 erate 0.0316 score 4971.77 - alt edge len 3179 erate 0.0447 score 3036.90 - absdiff 1934.87 percdiff 48.3193 tig 91 read 550563 pos 4720-16710 NOT confused by 5' edge to read 98426 - best edge read 119745 len 8503 erate 0.0411 score 8153.53 - alt edge len 2123 erate 0.0485 score 2020.03 - absdiff 6133.49 percdiff 120.5771 tig 91 read 550563 pos 4720-16710 IS confused by 3' edge to read 377979 - best edge read 505572 len 5134 erate 0.0316 score 4971.77 - alt edge len 3579 erate 0.0416 score 3430.11 - absdiff 1541.65 percdiff 36.6978 tig 91 read 550563 pos 4720-16710 NOT confused by 5' edge to read 531680 - best edge read 119745 len 8503 erate 0.0411 score 8153.53 - alt edge len 2120 erate 0.0519 score 2009.97 - absdiff 6143.55 percdiff 120.8945 tig 91 read 550563 pos 4720-16710 NOT confused by 3' edge to read 621498 - best edge read 505572 len 5134 erate 0.0316 score 4971.77 - alt edge len 1368 erate 0.0658 score 1277.99 - absdiff 3693.78 percdiff 118.2057 saved region 0:20249 - 4 best edges are potentially confused break tig 91 into up to 2 pieces: 0 20749 repeat (length 20749) 20749 33104 unique (length 12355) Creating Unitig 113116 Creating Unitig 113117 For tig 91 repeat region 0 20749 - 117/ 0 reads repeat/unique - unitig 113116 created. For tig 91 unique region 20749 33104 - 0/ 10 reads repeat/unique - unitig 113117 created. Annotating repeats in reads for tig 93/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 94/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5286:13511 - closest 5' read 204117 ( +1151) 4135:9843 ( -3668) saved region 5286:13511 - closest 3' read 199802 ( -1279) 6565:15060 ( +1549) search for confused edges: discard region 5286:13511 - no confusion in best edges Annotating repeats in reads for tig 95/113047. Annotated with 725 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2845:14359 - closest 5' read 489155 ( +0) 2845:11940 ( -2419) saved region 2845:14359 - closest 3' read 573416 ( -7986) 10831:14359 ( +0) search for confused edges: tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 35387 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 1077 erate 0.0690 score 1002.69 - absdiff 4959.92 percdiff 142.4181 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 362081 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 867 erate 0.0554 score 818.97 - absdiff 5143.64 percdiff 151.6945 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 379026 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 2758 erate 0.0723 score 2558.60 - absdiff 3404.01 percdiff 79.8950 tig 95 read 635145 pos 41-9108 IS confused by 3' edge to read 464866 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 4570 erate 0.0679 score 4259.70 - absdiff 1702.91 percdiff 33.3175 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 519267 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 2589 erate 0.0505 score 2458.26 - absdiff 3504.35 percdiff 83.2302 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 600399 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 2766 erate 0.0651 score 2585.93 - absdiff 3376.67 percdiff 79.0000 tig 95 read 635145 pos 41-9108 NOT confused by 3' edge to read 677214 - best edge read 532038 len 6168 erate 0.0333 score 5962.61 - alt edge len 1817 erate 0.0696 score 1690.54 - absdiff 4272.07 percdiff 111.6422 tig 95 read 532038 pos 3469-10586 NOT confused by 3' edge to read 362081 - best edge read 489155 len 5516 erate 0.0693 score 5133.74 - alt edge len 1748 erate 0.0716 score 1622.84 - absdiff 3510.90 percdiff 103.9252 tig 95 read 532038 pos 3469-10586 IS confused by 3' edge to read 519267 - best edge read 489155 len 5516 erate 0.0693 score 5133.74 - alt edge len 5253 erate 0.0696 score 4887.39 - absdiff 246.35 percdiff 4.9166 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 99031 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1209 erate 0.0645 score 1131.02 - absdiff 1173.86 percdiff 68.3290 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 99034 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1211 erate 0.0677 score 1129.02 - absdiff 1175.86 percdiff 68.4856 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 144991 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 604 erate 0.0646 score 564.98 - absdiff 1739.89 percdiff 121.2530 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 159146 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 550 erate 0.0364 score 529.98 - absdiff 1774.90 percdiff 125.2195 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 247879 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1377 erate 0.0541 score 1302.50 - absdiff 1002.37 percdiff 55.5734 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 302167 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1155 erate 0.0470 score 1100.71 - absdiff 1959.67 percdiff 94.1901 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 447228 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 2333 erate 0.0728 score 2163.16 - absdiff 897.23 percdiff 34.3534 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 464241 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1450 erate 0.0353 score 1398.82 - absdiff 1661.57 percdiff 74.5234 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 464242 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1451 erate 0.0380 score 1395.86 - absdiff 1664.53 percdiff 74.7053 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 506396 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1116 erate 0.0672 score 1041.00 - absdiff 1263.87 percdiff 75.5479 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 516392 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 1089 erate 0.0744 score 1007.98 - absdiff 1296.90 percdiff 78.2949 tig 95 read 372708 pos 8375-13532 IS confused by 5' edge to read 575114 - best edge read 489155 len 3244 erate 0.0566 score 3060.39 - alt edge len 1842 erate 0.0453 score 1758.56 - absdiff 1301.83 percdiff 54.0297 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 679773 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 2404 erate 0.0616 score 2255.91 - absdiff 48.96 percdiff 2.1471 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 679774 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 2412 erate 0.0595 score 2268.49 - absdiff 36.39 percdiff 1.5914 tig 95 read 372708 pos 8375-13532 IS confused by 3' edge to read 692155 - best edge read 34339 len 2463 erate 0.0642 score 2304.88 - alt edge len 999 erate 0.0552 score 943.86 - absdiff 1361.02 percdiff 83.7878 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 109123 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1035 erate 0.0630 score 969.80 - absdiff 1343.50 percdiff 81.8437 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 109124 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1043 erate 0.0510 score 989.81 - absdiff 1323.49 percdiff 80.1362 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 247879 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1036 erate 0.0668 score 966.80 - absdiff 1346.50 percdiff 82.1015 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 464241 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 595 erate 0.0659 score 555.79 - absdiff 1757.51 percdiff 122.5134 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 464242 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 596 erate 0.0658 score 556.78 - absdiff 1756.51 percdiff 122.4017 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 464864 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1031 erate 0.0691 score 959.76 - absdiff 1353.54 percdiff 82.7080 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 519267 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 1077 erate 0.0605 score 1011.84 - absdiff 1301.46 percdiff 78.2798 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 645307 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 908 erate 0.0519 score 860.87 - absdiff 1452.42 percdiff 91.5151 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 685153 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 692 erate 0.0653 score 646.81 - absdiff 1666.49 percdiff 112.5962 tig 95 read 34339 pos 11716-16028 IS confused by 5' edge to read 691345 - best edge read 372708 len 2472 erate 0.0642 score 2313.30 - alt edge len 2401 erate 0.0477 score 2286.47 - absdiff 26.83 percdiff 1.1664 saved region 2845:14359 - 27 best edges are potentially confused break tig 95 into up to 3 pieces: 0 2345 unique (length 2345) 2345 14859 repeat (length 12514) 14859 16028 unique (length 1169) Creating Unitig 113118 Creating Unitig 113119 Creating Unitig 113120 For tig 95 unique region 0 2345 - 0/ 4 reads repeat/unique - unitig 113118 created. For tig 95 repeat region 2345 14859 - 56/ 0 reads repeat/unique - unitig 113119 created. For tig 95 unique region 14859 16028 - 0/ 1 reads repeat/unique - unitig 113120 created. Annotating repeats in reads for tig 98/113047. Annotated with 304 overlaps. Scan reads to discard spanned repeats. discard region 6919:7655 - contained in read 71469 0- 8656 discard region 20617:21339 - contained in read 588173 11831- 24510 thickest edges to the repeat regions: saved region 7759:19478 - closest read 198934 ( +394) 7365:21702 ( +2224) (contained) saved region 7759:19478 - closest read 198935 ( +91) 7668:20523 ( +1045) (contained) saved region 7759:19478 - closest read 198933 ( +83) 7676:21715 ( +2237) (contained) saved region 7759:19478 - closest 5' read 198933 ( +83) 7676:21715 ( +2237) saved region 7759:19478 - closest 3' read 198934 ( +394) 7365:21702 ( +2224) saved region 23959:31146 - closest read 479939 ( +274) 23685:31146 ( +0) (contained) saved region 23959:31146 - closest 5' read 479939 ( +274) 23685:31146 ( +0) saved region 23959:31146 - closest 3' read 479939 ( +274) 23685:31146 ( +0) saved region 36855:42264 - closest 5' read 56209 ( +2498) 34357:41733 ( -531) saved region 36855:42264 - closest 3' read 400474 ( -1413) 38268:44115 ( +1851) search for confused edges: discard region 7759:19478 - no confusion in best edges discard region 23959:31146 - no confusion in best edges discard region 36855:42264 - no confusion in best edges Annotating repeats in reads for tig 99/113047. Annotated with 79 overlaps. Scan reads to discard spanned repeats. discard region 0:8021 - contained in read 53723 0- 8647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 101/113047. Annotated with 964 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19172:45533 - closest 5' read 140436 ( +863) 18309:25551 (-19982) saved region 19172:45533 - closest 3' read 566042 (-18224) 37396:47477 ( +1944) search for confused edges: tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 209300 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 1791 erate 0.0408 score 1717.93 - absdiff 1458.85 percdiff 59.6092 tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 558385 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 1450 erate 0.0656 score 1354.88 - absdiff 1821.89 percdiff 80.4075 tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 669557 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 2632 erate 0.0491 score 2502.77 - absdiff 674.01 percdiff 23.7345 tig 101 read 699198 pos 23185-35431 IS confused by 3' edge to read 669560 - best edge read 140436 len 3338 erate 0.0483 score 3176.77 - alt edge len 2660 erate 0.0455 score 2538.97 - absdiff 637.80 percdiff 22.3175 tig 101 read 591678 pos 27278-34612 NOT confused by 3' edge to read 109796 - best edge read 699198 len 5679 erate 0.0451 score 5422.88 - alt edge len 838 erate 0.0706 score 778.84 - absdiff 4644.04 percdiff 149.7663 tig 101 read 591678 pos 27278-34612 NOT confused by 3' edge to read 305539 - best edge read 699198 len 5679 erate 0.0451 score 5422.88 - alt edge len 2129 erate 0.0701 score 1979.76 - absdiff 3443.12 percdiff 93.0242 tig 101 read 591678 pos 27278-34612 NOT confused by 3' edge to read 480956 - best edge read 699198 len 5679 erate 0.0451 score 5422.88 - alt edge len 1552 erate 0.0645 score 1451.90 - absdiff 3970.98 percdiff 115.5233 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 109796 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 1332 erate 0.0563 score 1257.01 - absdiff 4640.12 percdiff 129.7185 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 305539 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 1549 erate 0.0638 score 1450.17 - absdiff 4446.96 percdiff 121.0500 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 307211 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 2254 erate 0.0730 score 2089.46 - absdiff 3807.67 percdiff 95.3517 tig 101 read 642427 pos 28722-36717 NOT confused by 3' edge to read 480956 - best edge read 591678 len 6324 erate 0.0675 score 5897.13 - alt edge len 1869 erate 0.0460 score 1783.03 - absdiff 4114.10 percdiff 107.1359 tig 101 read 199241 pos 30157-37627 NOT confused by 5' edge to read 127539 - best edge read 71659 len 7248 erate 0.0365 score 6983.45 - alt edge len 651 erate 0.0483 score 619.56 - absdiff 6363.89 percdiff 167.4046 tig 101 read 199241 pos 30157-37627 NOT confused by 3' edge to read 221588 - best edge read 642427 len 6777 erate 0.0305 score 6570.30 - alt edge len 565 erate 0.0373 score 543.93 - absdiff 6026.38 percdiff 169.4176 tig 101 read 567068 pos 32791-40984 NOT confused by 3' edge to read 110947 - best edge read 699636 len 6666 erate 0.0279 score 6480.02 - alt edge len 1758 erate 0.0353 score 1695.94 - absdiff 4784.08 percdiff 117.0279 tig 101 read 578180 pos 34428-43878 NOT confused by 5' edge to read 110947 - best edge read 578178 len 9345 erate 0.0218 score 9141.28 - alt edge len 514 erate 0.0409 score 492.98 - absdiff 8648.30 percdiff 179.5323 tig 101 read 578178 pos 34431-43866 NOT confused by 5' edge to read 110947 - best edge read 567068 len 7001 erate 0.0627 score 6562.04 - alt edge len 515 erate 0.0408 score 493.99 - absdiff 6068.05 percdiff 171.9962 tig 101 read 578179 pos 34440-43901 NOT confused by 3' edge to read 110947 - best edge read 578180 len 9360 erate 0.0212 score 9161.57 - alt edge len 502 erate 0.0361 score 483.88 - absdiff 8677.69 percdiff 179.9334 tig 101 read 566042 pos 37396-47477 NOT confused by 3' edge to read 226964 - best edge read 578179 len 6498 erate 0.0647 score 6077.58 - alt edge len 582 erate 0.0311 score 563.90 - absdiff 5513.68 percdiff 166.0377 saved region 19172:45533 - 4 best edges are potentially confused break tig 101 into up to 3 pieces: 0 18672 unique (length 18672) 18672 46033 repeat (length 27361) 46033 54155 unique (length 8122) Creating Unitig 113121 Creating Unitig 113122 Creating Unitig 113123 For tig 101 unique region 0 18672 - 0/ 43 reads repeat/unique - unitig 113121 created. For tig 101 repeat region 18672 46033 - 75/ 0 reads repeat/unique - unitig 113122 created. For tig 101 unique region 46033 54155 - 0/ 7 reads repeat/unique - unitig 113123 created. Annotating repeats in reads for tig 102/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 34393:36897 - contained in read 477997 30884- 40668 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 103/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 20673:22467 - closest read 657753 ( +4301) 16372:22513 ( +46) (contained) saved region 20673:22467 - closest read 657752 ( +4290) 16383:22518 ( +51) (contained) saved region 20673:22467 - closest read 657750 ( +4287) 16386:22514 ( +47) (contained) saved region 20673:22467 - closest 5' read 657752 ( +4290) 16383:22518 ( +51) saved region 20673:22467 - closest 3' read 657753 ( +4301) 16372:22513 ( +46) search for confused edges: discard region 20673:22467 - no confusion in best edges Annotating repeats in reads for tig 104/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 105/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8070:8621 - contained in read 577520 1111- 9918 discard region 21767:22347 - contained in read 91219 12473- 24009 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 107/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 31617:33931 - closest 5' read 485616 ( +5407) 26210:33919 ( -12) saved region 31617:33931 - closest 3' read 68357 ( -76) 31693:35071 ( +1140) search for confused edges: tig 107 read 485616 pos 26210-33919 IS confused by 5' edge to read 250740 - best edge read 68357 len 2196 erate 0.0476 score 2091.47 - alt edge len 2183 erate 0.0582 score 2055.95 - absdiff 35.52 percdiff 1.7129 tig 107 read 485616 pos 26210-33919 IS confused by 5' edge to read 516913 - best edge read 68357 len 2196 erate 0.0476 score 2091.47 - alt edge len 2075 erate 0.0496 score 1972.08 - absdiff 119.39 percdiff 5.8762 saved region 31617:33931 - 2 best edges are potentially confused break tig 107 into up to 3 pieces: 0 31117 unique (length 31117) 31117 34431 repeat (length 3314) 34431 35071 unique (length 640) Creating Unitig 113124 Creating Unitig 113125 Creating Unitig 113126 For tig 107 unique region 0 31117 - 0/ 40 reads repeat/unique - unitig 113124 created. For tig 107 repeat region 31117 34431 - 9/ 0 reads repeat/unique - unitig 113125 created. For tig 107 unique region 34431 35071 - 0/ 2 reads repeat/unique - unitig 113126 created. Annotating repeats in reads for tig 108/113047. Annotated with 131 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11677:15273 - closest 5' read 494035 ( +9312) 2365:14693 ( -580) saved region 11677:15273 - closest 3' read 285990 ( -643) 12320:18210 ( +2937) saved region 26366:30837 - closest read 125116 ( +287) 26079:33047 ( +2210) (contained) saved region 26366:30837 - closest 5' read 125116 ( +287) 26079:33047 ( +2210) saved region 26366:30837 - closest 3' read 125116 ( +287) 26079:33047 ( +2210) search for confused edges: discard region 11677:15273 - no confusion in best edges discard region 26366:30837 - no confusion in best edges Annotating repeats in reads for tig 110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 111/113047. Annotated with 170 overlaps. Scan reads to discard spanned repeats. discard region 23187:24122 - contained in read 510691 14670- 24122 thickest edges to the repeat regions: saved region 13164:22260 - closest 5' read 313445 ( +1840) 11324:19858 ( -2402) saved region 13164:22260 - closest 3' read 510692 ( -1498) 14662:24076 ( +1816) search for confused edges: tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 70585 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 713 erate 0.0603 score 670.01 - absdiff 6370.11 percdiff 165.2402 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 220381 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 1657 erate 0.0115 score 1637.94 - absdiff 5402.18 percdiff 124.5019 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 649650 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 825 erate 0.0446 score 788.21 - absdiff 6251.92 percdiff 159.7255 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 715912 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 2594 erate 0.0209 score 2539.79 - absdiff 4500.34 percdiff 93.9536 tig 111 read 452941 pos 13645-22135 NOT confused by 3' edge to read 715913 - best edge read 510691 len 7385 erate 0.0467 score 7040.12 - alt edge len 2530 erate 0.0159 score 2489.77 - absdiff 4550.35 percdiff 95.4963 tig 111 read 510691 pos 14670-24122 IS confused by 3' edge to read 122130 - best edge read 452941 len 7253 erate 0.0491 score 6896.88 - alt edge len 7070 erate 0.0352 score 6821.14 - absdiff 75.74 percdiff 1.1043 saved region 13164:22260 - 1 best edges are potentially confused break tig 111 into up to 3 pieces: 0 12664 unique (length 12664) 12664 22760 repeat (length 10096) 22760 24122 unique (length 1362) Creating Unitig 113127 Creating Unitig 113128 Creating Unitig 113129 For tig 111 unique region 0 12664 - 0/ 12 reads repeat/unique - unitig 113127 created. For tig 111 repeat region 12664 22760 - 41/ 0 reads repeat/unique - unitig 113128 created. For tig 111 unique region 22760 24122 - 0/ 3 reads repeat/unique - unitig 113129 created. Annotating repeats in reads for tig 113/113047. Annotated with 392 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4715:12344 - closest read 262068 ( +0) 4715:13495 ( +1151) (contained) saved region 4715:12344 - closest 5' read 262068 ( +0) 4715:13495 ( +1151) saved region 4715:12344 - closest 3' read 262068 ( +0) 4715:13495 ( +1151) search for confused edges: tig 113 read 27469 pos 586-11238 IS confused by 3' edge to read 262070 - best edge read 262068 len 5059 erate 0.0580 score 4765.58 - alt edge len 3955 erate 0.0687 score 3683.29 - absdiff 1082.29 percdiff 25.6197 tig 113 read 27469 pos 586-11238 NOT confused by 3' edge to read 635073 - best edge read 262068 len 5059 erate 0.0580 score 4765.58 - alt edge len 1507 erate 0.0595 score 1417.33 - absdiff 3348.24 percdiff 108.3064 saved region 4715:12344 - 1 best edges are potentially confused break tig 113 into up to 3 pieces: 0 4215 unique (length 4215) 4215 12844 repeat (length 8629) 12844 13778 unique (length 934) Creating Unitig 113130 Creating Unitig 113131 Creating Unitig 113132 For tig 113 unique region 0 4215 - 0/ 18 reads repeat/unique - unitig 113130 created. For tig 113 repeat region 4215 12844 - 30/ 0 reads repeat/unique - unitig 113132 created. For tig 113 unique region 12844 13778 - 0/ 2 reads repeat/unique - unitig 113131 created. Annotating repeats in reads for tig 115/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 2461:7184 - contained in read 372719 0- 10494 discard region 9369:11522 - contained in read 469093 4823- 11522 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 116/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 9350:10720 - contained in read 47650 5345- 14164 discard region 17547:20427 - contained in read 376679 12545- 22187 thickest edges to the repeat regions: saved region 0:7627 - closest 5' read 379026 ( +0) 0:6504 ( -1123) saved region 0:7627 - closest 3' read 47650 ( -5345) 5345:14164 ( +6537) saved region 12525:14164 - closest read 47650 ( +7180) 5345:14164 ( +0) (contained) saved region 12525:14164 - closest read 47652 ( +7159) 5366:14164 ( +0) (contained) saved region 12525:14164 - closest 5' read 47650 ( +7180) 5345:14164 ( +0) saved region 12525:14164 - closest 3' read 47650 ( +7180) 5345:14164 ( +0) search for confused edges: tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 110646 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1062 erate 0.0538 score 1004.86 - absdiff 89.93 percdiff 8.5659 tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 525367 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1072 erate 0.0589 score 1008.86 - absdiff 85.93 percdiff 8.1698 tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 525368 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1083 erate 0.0612 score 1016.72 - absdiff 78.07 percdiff 7.3948 tig 116 read 379026 pos 0-6504 IS confused by 3' edge to read 525369 - best edge read 47651 len 1159 erate 0.0554 score 1094.79 - alt edge len 1075 erate 0.0682 score 1001.68 - absdiff 93.11 percdiff 8.8822 tig 116 read 47651 pos 5350-14151 IS confused by 3' edge to read 118202 - best edge read 376679 len 1600 erate 0.0625 score 1500.00 - alt edge len 1213 erate 0.0652 score 1133.91 - absdiff 366.09 percdiff 27.7980 tig 116 read 47651 pos 5350-14151 IS confused by 3' edge to read 151071 - best edge read 376679 len 1600 erate 0.0625 score 1500.00 - alt edge len 1597 erate 0.0429 score 1528.49 - absdiff 28.49 percdiff 1.8814 tig 116 read 47651 pos 5350-14151 IS confused by 3' edge to read 655161 - best edge read 376679 len 1600 erate 0.0625 score 1500.00 - alt edge len 527 erate 0.0437 score 503.97 - absdiff 996.03 percdiff 99.4057 saved region 0:7627 - 4 best edges are potentially confused saved region 12525:14164 - 3 best edges are potentially confused break tig 116 into up to 4 pieces: 0 8127 repeat (length 8127) 8127 12025 unique (length 3898) 12025 14664 repeat (length 2639) 14664 40675 unique (length 26011) Creating Unitig 113133 Creating Unitig 113134 Creating Unitig 113135 Creating Unitig 113136 For tig 116 repeat region 0 8127 - 2/ 0 reads repeat/unique - unitig 113133 created. For tig 116 unique region 8127 12025 - 0/ 11 reads repeat/unique - unitig 113134 created. For tig 116 repeat region 12025 14664 - 2/ 0 reads repeat/unique - unitig 113136 created. For tig 116 unique region 14664 40675 - 0/ 32 reads repeat/unique - unitig 113135 created. Annotating repeats in reads for tig 118/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 1542:2746 - contained in read 278511 0- 8190 discard region 5282:4367 - contained in read 278511 0- 8190 discard region 5597:4788 - contained in read 278511 0- 8190 discard region 17272:21333 - contained in read 579616 14265- 21863 discard region 22849:26977 - contained in read 411862 20592- 26977 thickest edges to the repeat regions: saved region 5976:13350 - closest 5' read 127308 ( +1517) 4459:13070 ( -280) saved region 5976:13350 - closest 3' read 714305 ( -4096) 10072:16707 ( +3357) search for confused edges: tig 118 read 694516 pos 7370-12156 IS confused by 3' edge to read 411862 - best edge read 582967 len 4657 erate 0.0350 score 4494.01 - alt edge len 3111 erate 0.0263 score 3029.18 - absdiff 1464.82 percdiff 38.9416 tig 118 read 89944 pos 8554-12170 IS confused by 5' edge to read 411862 - best edge read 694516 len 2738 erate 0.0482 score 2606.03 - alt edge len 1129 erate 0.0421 score 1081.47 - absdiff 1524.56 percdiff 82.6880 saved region 5976:13350 - 2 best edges are potentially confused break tig 118 into up to 3 pieces: 0 5476 unique (length 5476) 5476 13850 repeat (length 8374) 13850 26977 unique (length 13127) Creating Unitig 113137 Creating Unitig 113138 Creating Unitig 113139 For tig 118 unique region 0 5476 - 0/ 7 reads repeat/unique - unitig 113137 created. For tig 118 repeat region 5476 13850 - 22/ 0 reads repeat/unique - unitig 113138 created. For tig 118 unique region 13850 26977 - 0/ 28 reads repeat/unique - unitig 113139 created. Annotating repeats in reads for tig 120/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4543:6016 - closest read 430862 ( +4541) 2:6098 ( +82) (contained) saved region 4543:6016 - closest read 430863 ( +4291) 252:6127 ( +111) (contained) saved region 4543:6016 - closest 5' read 430863 ( +4291) 252:6127 ( +111) saved region 4543:6016 - closest 3' read 430862 ( +4541) 2:6098 ( +82) search for confused edges: discard region 4543:6016 - no confusion in best edges Annotating repeats in reads for tig 123/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:17160 - closest 5' read 529498 ( +0) 0:7189 ( -9971) saved region 0:17160 - closest 3' read 361212 ( -8069) 8069:17160 ( +0) search for confused edges: tig 123 read 529499 pos 890-7250 IS confused by 3' edge to read 361212 - best edge read 529498 len 6248 erate 0.0231 score 6103.67 - alt edge len 5064 erate 0.0683 score 4718.13 - absdiff 1385.54 percdiff 25.6065 tig 123 read 484781 pos 3970-15574 NOT confused by 5' edge to read 149614 - best edge read 185522 len 5306 erate 0.0162 score 5220.04 - alt edge len 649 erate 0.0576 score 611.62 - absdiff 4608.43 percdiff 158.0485 tig 123 read 498346 pos 5367-14324 NOT confused by 5' edge to read 149614 - best edge read 361212 len 8042 erate 0.0421 score 7703.43 - alt edge len 3311 erate 0.0657 score 3093.47 - absdiff 4609.96 percdiff 85.3942 tig 123 read 185522 pos 5407-14271 NOT confused by 5' edge to read 415964 - best edge read 484781 len 5316 erate 0.0162 score 5229.88 - alt edge len 692 erate 0.0234 score 675.81 - absdiff 4554.07 percdiff 154.2267 saved region 0:17160 - 1 best edges are potentially confused Annotating repeats in reads for tig 126/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2144 - contained in read 663797 0- 4120 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 127/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 6007:6647 - contained in read 583924 0- 9916 thickest edges to the repeat regions: saved region 20934:28448 - closest 5' read 594824 ( +9190) 11744:23835 ( -4613) saved region 20934:28448 - closest 3' read 649999 ( -1318) 22252:28448 ( +0) search for confused edges: discard region 20934:28448 - no confusion in best edges Annotating repeats in reads for tig 129/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2228:7653 - contained in read 503785 1704- 7653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 133/113047. Annotated with 2036 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3276:22158 - closest 5' read 595206 ( +0) 3276:14596 ( -7562) saved region 3276:22158 - closest 3' read 9364 (-12516) 15792:22158 ( +0) search for confused edges: discard region 3276:22158 - no confusion in best edges Annotating repeats in reads for tig 134/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 33216:34690 - contained in read 313259 31535- 35828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 135/113047. Annotated with 105 overlaps. Scan reads to discard spanned repeats. discard region 10900:12780 - contained in read 557500 4090- 14740 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 136/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 23778:24509 - contained in read 521602 20671- 26669 thickest edges to the repeat regions: saved region 19636:22181 - closest read 661142 ( +3794) 15842:22181 ( +0) (contained) saved region 19636:22181 - closest read 81814 ( +1972) 17664:22387 ( +206) (contained) saved region 19636:22181 - closest 5' read 81814 ( +1972) 17664:22387 ( +206) saved region 19636:22181 - closest 3' read 661142 ( +3794) 15842:22181 ( +0) search for confused edges: discard region 19636:22181 - no confusion in best edges Annotating repeats in reads for tig 137/113047. Annotated with 112 overlaps. Scan reads to discard spanned repeats. discard region 7517:9874 - contained in read 717762 4491- 10515 thickest edges to the repeat regions: saved region 646:6438 - closest read 577098 ( +646) 0:6438 ( +0) (contained) saved region 646:6438 - closest 5' read 577098 ( +646) 0:6438 ( +0) saved region 646:6438 - closest 3' read 577098 ( +646) 0:6438 ( +0) saved region 19307:22812 - closest 5' read 530402 ( +0) 19307:22255 ( -557) saved region 19307:22812 - closest 3' read 385929 ( -34) 19341:26906 ( +4094) saved region 25343:33201 - closest read 174415 ( +91) 25252:33201 ( +0) (contained) saved region 25343:33201 - closest read 250072 ( +13) 25330:36795 ( +3594) (contained) saved region 25343:33201 - closest read 617847 ( +10) 25333:33818 ( +617) (contained) saved region 25343:33201 - closest 5' read 250072 ( +13) 25330:36795 ( +3594) saved region 25343:33201 - closest 3' read 174415 ( +91) 25252:33201 ( +0) search for confused edges: tig 137 read 717762 pos 4491-10515 IS confused by 3' edge to read 473572 - best edge read 577098 len 1909 erate 0.0524 score 1808.97 - alt edge len 893 erate 0.0504 score 847.99 - absdiff 960.98 percdiff 72.3364 tig 137 read 717762 pos 4491-10515 IS confused by 3' edge to read 663433 - best edge read 577098 len 1909 erate 0.0524 score 1808.97 - alt edge len 1790 erate 0.0734 score 1658.61 - absdiff 150.35 percdiff 8.6720 saved region 646:6438 - 2 best edges are potentially confused discard region 19307:22812 - no confusion in best edges discard region 25343:33201 - no confusion in best edges break tig 137 into up to 3 pieces: 0 146 unique (length 146) 146 6938 repeat (length 6792) 6938 36795 unique (length 29857) Creating Unitig 113140 Creating Unitig 113141 Creating Unitig 113142 For tig 137 unique region 0 146 - 0/ 3 reads repeat/unique - unitig 113140 created. For tig 137 repeat region 146 6938 - 1/ 0 reads repeat/unique - unitig 113142 created. For tig 137 unique region 6938 36795 - 0/ 110 reads repeat/unique - unitig 113141 created. Annotating repeats in reads for tig 138/113047. Annotated with 1991 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17938:29463 - closest 5' read 582838 ( +0) 17938:25367 ( -4096) saved region 17938:29463 - closest 3' read 250064 ( -105) 18043:29463 ( +0) search for confused edges: tig 138 read 546407 pos 14075-23948 NOT confused by 3' edge to read 40518 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 1126 erate 0.0365 score 1084.90 - absdiff 2539.48 percdiff 107.8499 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 52536 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2407 erate 0.0655 score 2249.34 - absdiff 1375.04 percdiff 46.8199 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 52537 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2394 erate 0.0651 score 2238.15 - absdiff 1386.23 percdiff 47.2911 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 94597 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2443 erate 0.0614 score 2293.00 - absdiff 1331.38 percdiff 44.9989 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 166756 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3126 erate 0.0639 score 2926.25 - absdiff 698.13 percdiff 21.3149 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 336357 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3415 erate 0.0622 score 3202.59 - absdiff 421.79 percdiff 12.3566 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 554187 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2303 erate 0.0635 score 2156.76 - absdiff 1467.62 percdiff 50.7726 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 599347 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3763 erate 0.0671 score 3510.50 - absdiff 113.87 percdiff 3.1921 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 599349 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3762 erate 0.0660 score 3513.71 - absdiff 110.67 percdiff 3.1008 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 608472 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3307 erate 0.0423 score 3167.11 - absdiff 457.26 percdiff 13.4658 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 608476 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3303 erate 0.0423 score 3163.28 - absdiff 461.09 percdiff 13.5863 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 609433 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 2481 erate 0.0601 score 2331.89 - absdiff 1292.49 percdiff 43.3992 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 611814 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3368 erate 0.0543 score 3185.12 - absdiff 439.26 percdiff 12.9014 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 628083 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3104 erate 0.0483 score 2954.08 - absdiff 670.30 percdiff 20.3787 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 628084 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3094 erate 0.0446 score 2956.01 - absdiff 668.37 percdiff 20.3140 tig 138 read 546407 pos 14075-23948 IS confused by 3' edge to read 643871 - best edge read 201858 len 3906 erate 0.0721 score 3624.38 - alt edge len 3793 erate 0.0658 score 3543.42 - absdiff 80.96 percdiff 2.2589 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 52536 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2272 erate 0.0645 score 2125.46 - absdiff 4679.68 percdiff 104.8011 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 52537 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2259 erate 0.0605 score 2122.33 - absdiff 4682.81 percdiff 104.9078 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 89831 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2038 erate 0.0665 score 1902.47 - absdiff 4902.66 percdiff 112.6064 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 94597 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2308 erate 0.0566 score 2177.37 - absdiff 4627.77 percdiff 103.0396 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 166756 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2981 erate 0.0615 score 2797.67 - absdiff 4007.47 percdiff 83.4645 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 166758 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2979 erate 0.0703 score 2769.58 - absdiff 4035.56 percdiff 84.2962 tig 138 read 201858 pos 19772-27251 IS confused by 3' edge to read 238313 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 6765 erate 0.0467 score 6449.07 - absdiff 356.06 percdiff 5.3728 tig 138 read 201858 pos 19772-27251 IS confused by 3' edge to read 336357 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 6841 erate 0.0551 score 6464.06 - absdiff 341.08 percdiff 5.1409 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 554187 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2169 erate 0.0593 score 2040.38 - absdiff 4764.76 percdiff 107.7328 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 599347 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3610 erate 0.0626 score 3384.01 - absdiff 3421.12 percdiff 67.1523 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 599349 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3609 erate 0.0592 score 3395.35 - absdiff 3409.79 percdiff 66.8554 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 608472 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3161 erate 0.0514 score 2998.52 - absdiff 3806.61 percdiff 77.6569 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 608476 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3157 erate 0.0521 score 2992.52 - absdiff 3812.62 percdiff 77.8271 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 609433 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2345 erate 0.0639 score 2195.15 - absdiff 4609.98 percdiff 102.4407 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 611814 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 3221 erate 0.0617 score 3022.26 - absdiff 3782.87 percdiff 76.9862 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 628083 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2961 erate 0.0475 score 2820.35 - absdiff 3984.78 percdiff 82.7965 tig 138 read 201858 pos 19772-27251 NOT confused by 3' edge to read 628084 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 2951 erate 0.0429 score 2824.40 - absdiff 3980.73 percdiff 82.6776 tig 138 read 201858 pos 19772-27251 IS confused by 3' edge to read 643871 - best edge read 259113 len 7304 erate 0.0683 score 6805.14 - alt edge len 7220 erate 0.0547 score 6825.07 - absdiff 19.93 percdiff 0.2924 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 69514 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 1740 erate 0.0454 score 1661.00 - absdiff 4794.60 percdiff 118.1429 tig 138 read 637543 pos 20510-29157 IS confused by 3' edge to read 73835 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 6087 erate 0.0394 score 5847.17 - absdiff 608.43 percdiff 9.8909 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 86124 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2232 erate 0.0555 score 2108.12 - absdiff 4347.48 percdiff 101.5324 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 114215 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 3272 erate 0.0424 score 3133.27 - absdiff 3322.33 percdiff 69.2956 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 114216 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 3303 erate 0.0447 score 3155.36 - absdiff 3300.25 percdiff 68.6767 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 137335 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2672 erate 0.0738 score 2474.81 - absdiff 3980.79 percdiff 89.1515 tig 138 read 637543 pos 20510-29157 IS confused by 3' edge to read 212668 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 4967 erate 0.0459 score 4739.01 - absdiff 1716.59 percdiff 30.6681 tig 138 read 637543 pos 20510-29157 IS confused by 3' edge to read 260751 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 5299 erate 0.0694 score 4931.25 - absdiff 1524.35 percdiff 26.7739 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 293555 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2559 erate 0.0582 score 2410.07 - absdiff 4045.54 percdiff 91.2630 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 478039 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 1764 erate 0.0586 score 1660.63 - absdiff 4794.97 percdiff 118.1576 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 532060 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2709 erate 0.0705 score 2518.02 - absdiff 3937.59 percdiff 87.7592 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 556591 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 2068 erate 0.0430 score 1979.08 - absdiff 4476.53 percdiff 106.1457 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 628000 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 1684 erate 0.0459 score 1606.70 - absdiff 4848.90 percdiff 120.2856 tig 138 read 637543 pos 20510-29157 NOT confused by 3' edge to read 643871 - best edge read 250064 len 6943 erate 0.0702 score 6455.60 - alt edge len 3665 erate 0.0548 score 3464.16 - absdiff 2991.44 percdiff 60.3128 tig 138 read 637543 pos 20510-29157 IS confused by 5' edge to read 650501 - best edge read 177496 len 894 erate 0.0462 score 852.70 - alt edge len 508 erate 0.0673 score 473.81 - absdiff 378.89 percdiff 57.1252 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 16358 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3175 erate 0.0376 score 3055.62 - absdiff 3874.36 percdiff 77.5990 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 56472 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1670 erate 0.0734 score 1547.42 - absdiff 5382.56 percdiff 126.9861 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 69514 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2876 erate 0.0438 score 2750.03 - absdiff 4179.95 percdiff 86.3625 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 73835 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3595 erate 0.0592 score 3382.18 - absdiff 3547.81 percdiff 68.8082 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 86124 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3368 erate 0.0627 score 3156.83 - absdiff 3773.16 percdiff 74.8137 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 101499 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 933 erate 0.0606 score 876.46 - absdiff 6053.52 percdiff 155.0904 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 114215 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 4418 erate 0.0393 score 4244.37 - absdiff 2685.61 percdiff 48.0674 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 114216 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 4448 erate 0.0441 score 4251.84 - absdiff 2678.14 percdiff 47.9017 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 125239 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1156 erate 0.0747 score 1069.65 - absdiff 5860.34 percdiff 146.5152 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 137335 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3813 erate 0.0747 score 3528.17 - absdiff 3401.82 percdiff 65.0558 tig 138 read 259113 pos 20888-28980 IS confused by 5' edge to read 212668 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 6137 erate 0.0529 score 5812.35 - absdiff 1117.63 percdiff 17.5420 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 238313 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3842 erate 0.0607 score 3608.79 - absdiff 3708.53 percdiff 67.8839 tig 138 read 259113 pos 20888-28980 IS confused by 5' edge to read 260751 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 6513 erate 0.0628 score 6103.98 - absdiff 826.00 percdiff 12.6746 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 274118 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 851 erate 0.0565 score 802.92 - absdiff 6127.07 percdiff 158.4674 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 336357 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3917 erate 0.0592 score 3685.11 - absdiff 3632.21 percdiff 66.0256 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 532060 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3850 erate 0.0661 score 3595.51 - absdiff 3334.47 percdiff 63.3598 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 545260 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2331 erate 0.0496 score 2215.38 - absdiff 4714.60 percdiff 103.1036 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 545264 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2311 erate 0.0546 score 2184.82 - absdiff 4745.17 percdiff 104.1200 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 556591 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3203 erate 0.0425 score 3066.87 - absdiff 3863.11 percdiff 77.2865 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 563049 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1186 erate 0.0723 score 1100.25 - absdiff 5829.73 percdiff 145.1945 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 576860 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1304 erate 0.0567 score 1230.06 - absdiff 5699.92 percdiff 139.7031 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 576861 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 1304 erate 0.0550 score 1232.28 - absdiff 5697.70 percdiff 139.6109 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 599347 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 574 erate 0.0681 score 534.91 - absdiff 6782.41 percdiff 172.7512 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 628000 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 2819 erate 0.0356 score 2718.64 - absdiff 4211.34 percdiff 87.2941 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 628083 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3602 erate 0.0578 score 3393.80 - absdiff 3923.52 percdiff 73.2606 tig 138 read 259113 pos 20888-28980 NOT confused by 3' edge to read 628084 - best edge read 250064 len 7796 erate 0.0614 score 7317.33 - alt edge len 3592 erate 0.0552 score 3393.72 - absdiff 3923.60 percdiff 73.2628 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 643871 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 4814 erate 0.0629 score 4511.20 - absdiff 2418.79 percdiff 42.2821 tig 138 read 259113 pos 20888-28980 NOT confused by 5' edge to read 697592 - best edge read 201858 len 7438 erate 0.0683 score 6929.98 - alt edge len 3895 erate 0.0750 score 3602.88 - absdiff 3327.11 percdiff 63.1758 saved region 17938:29463 - 24 best edges are potentially confused break tig 138 into up to 3 pieces: 0 17438 unique (length 17438) 17438 29963 repeat (length 12525) 29963 40788 unique (length 10825) Creating Unitig 113143 Creating Unitig 113144 Creating Unitig 113145 For tig 138 unique region 0 17438 - 0/ 27 reads repeat/unique - unitig 113143 created. For tig 138 repeat region 17438 29963 - 142/ 0 reads repeat/unique - unitig 113144 created. For tig 138 unique region 29963 40788 - 0/ 8 reads repeat/unique - unitig 113145 created. Annotating repeats in reads for tig 139/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 0:5343 - contained in read 273676 0- 17266 discard region 8017:9404 - contained in read 273676 0- 17266 discard region 15498:16539 - contained in read 273676 0- 17266 discard region 27212:32591 - contained in read 88069 24035- 32591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 140/113047. Annotated with 253 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 38301:50081 - closest 5' read 444214 ( +221) 38080:48428 ( -1653) saved region 38301:50081 - closest 3' read 473695 ( -992) 39293:52784 ( +2703) search for confused edges: tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 161912 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4067 erate 0.0344 score 3927.10 - absdiff 4901.13 percdiff 76.8484 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 161913 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4125 erate 0.0483 score 3925.76 - absdiff 4902.46 percdiff 76.8773 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 182805 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 864 erate 0.0611 score 811.21 - absdiff 8017.01 percdiff 166.3379 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 182807 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 947 erate 0.0532 score 896.62 - absdiff 7931.60 percdiff 163.1204 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 218688 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 3691 erate 0.0065 score 3667.01 - absdiff 5161.21 percdiff 82.6109 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 247330 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 2173 erate 0.0171 score 2135.84 - absdiff 6692.38 percdiff 122.0785 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 440985 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4805 erate 0.0108 score 4753.11 - absdiff 4075.12 percdiff 60.0106 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 512052 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 922 erate 0.0065 score 916.01 - absdiff 7912.21 percdiff 162.3980 tig 140 read 444214 pos 38080-48428 NOT confused by 5' edge to read 553532 - best edge read 473695 len 8921 erate 0.0104 score 8828.22 - alt edge len 4130 erate 0.0141 score 4071.77 - absdiff 4756.45 percdiff 73.7435 tig 140 read 193387 pos 38468-44748 NOT confused by 3' edge to read 440985 - best edge read 444214 len 6200 erate 0.0267 score 6034.46 - alt edge len 791 erate 0.0330 score 764.90 - absdiff 5269.56 percdiff 155.0018 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 12477 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 5057 erate 0.0337 score 4886.58 - absdiff 3934.72 percdiff 57.4081 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 12478 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 5074 erate 0.0396 score 4873.07 - absdiff 3948.22 percdiff 57.6620 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 481276 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 1652 erate 0.0740 score 1529.75 - absdiff 7291.54 percdiff 140.8851 tig 140 read 473695 pos 39293-52784 NOT confused by 5' edge to read 486519 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 1796 erate 0.0656 score 1678.18 - absdiff 7143.11 percdiff 136.0661 tig 140 read 473695 pos 39293-52784 IS confused by 5' edge to read 641970 - best edge read 444214 len 8914 erate 0.0104 score 8821.29 - alt edge len 8693 erate 0.0272 score 8456.55 - absdiff 364.74 percdiff 4.2221 saved region 38301:50081 - 1 best edges are potentially confused break tig 140 into up to 3 pieces: 0 37801 unique (length 37801) 37801 50581 repeat (length 12780) 50581 55700 unique (length 5119) Creating Unitig 113146 Creating Unitig 113147 Creating Unitig 113148 For tig 140 unique region 0 37801 - 0/ 52 reads repeat/unique - unitig 113146 created. For tig 140 repeat region 37801 50581 - 86/ 0 reads repeat/unique - unitig 113147 created. For tig 140 unique region 50581 55700 - 0/ 13 reads repeat/unique - unitig 113148 created. Annotating repeats in reads for tig 143/113047. Annotated with 148 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5078:18276 - closest 5' read 715460 ( +739) 4339:13404 ( -4872) saved region 5078:18276 - closest 3' read 561077 ( -8633) 13711:18276 ( +0) search for confused edges: tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 41419 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 3655 erate 0.0121 score 3610.77 - absdiff 4131.55 percdiff 72.7827 tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 588173 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 2361 erate 0.0158 score 2323.70 - absdiff 5418.62 percdiff 107.6617 tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 656806 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 1761 erate 0.0553 score 1663.62 - absdiff 6078.70 percdiff 129.2525 tig 143 read 715460 pos 4339-13404 NOT confused by 5' edge to read 656808 - best edge read 416001 len 7815 erate 0.0093 score 7742.32 - alt edge len 1610 erate 0.0566 score 1518.87 - absdiff 6223.45 percdiff 134.3984 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 44592 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 5332 erate 0.0288 score 5178.44 - absdiff 2572.80 percdiff 39.7968 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 113975 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 5613 erate 0.0266 score 5463.69 - absdiff 2287.54 percdiff 34.6206 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 281908 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 2830 erate 0.0238 score 2762.65 - absdiff 4988.59 percdiff 94.8953 tig 143 read 416001 pos 5458-14668 NOT confused by 5' edge to read 468448 - best edge read 715460 len 7824 erate 0.0093 score 7751.24 - alt edge len 4060 erate 0.0360 score 3913.84 - absdiff 3837.40 percdiff 65.7929 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 44592 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 5313 erate 0.0257 score 5176.46 - absdiff 2979.29 percdiff 44.6931 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 113975 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 5594 erate 0.0217 score 5472.61 - absdiff 2683.14 percdiff 39.3758 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 191227 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 4242 erate 0.0249 score 4136.37 - absdiff 3017.46 percdiff 53.4527 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 279385 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 1196 erate 0.0336 score 1155.81 - absdiff 5998.02 percdiff 144.3628 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 281908 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 2811 erate 0.0200 score 2754.78 - absdiff 5400.97 percdiff 99.0047 tig 143 read 290912 pos 5479-17591 NOT confused by 5' edge to read 468448 - best edge read 416001 len 8798 erate 0.0730 score 8155.75 - alt edge len 4037 erate 0.0261 score 3931.63 - absdiff 4224.11 percdiff 69.8929 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 514335 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 2650 erate 0.0197 score 2597.80 - absdiff 4556.04 percdiff 93.4416 tig 143 read 290912 pos 5479-17591 NOT confused by 3' edge to read 562050 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 603 erate 0.0315 score 584.01 - absdiff 6569.83 percdiff 169.8104 tig 143 read 290912 pos 5479-17591 IS confused by 3' edge to read 588173 - best edge read 561082 len 7559 erate 0.0536 score 7153.84 - alt edge len 6511 erate 0.0214 score 6371.66 - absdiff 782.17 percdiff 11.5659 tig 143 read 561082 pos 9969-18180 NOT confused by 5' edge to read 44592 - best edge read 290912 len 7401 erate 0.0536 score 7004.31 - alt edge len 911 erate 0.0411 score 873.56 - absdiff 6130.75 percdiff 155.6449 tig 143 read 561082 pos 9969-18180 NOT confused by 5' edge to read 113975 - best edge read 290912 len 7401 erate 0.0536 score 7004.31 - alt edge len 1193 erate 0.0369 score 1148.98 - absdiff 5855.33 percdiff 143.6311 tig 143 read 561082 pos 9969-18180 NOT confused by 5' edge to read 385052 - best edge read 290912 len 7401 erate 0.0536 score 7004.31 - alt edge len 1810 erate 0.0504 score 1718.78 - absdiff 5285.53 percdiff 121.1849 saved region 5078:18276 - 1 best edges are potentially confused break tig 143 into up to 2 pieces: 0 4578 unique (length 4578) 4578 18276 repeat (length 13698) Creating Unitig 113149 Creating Unitig 113150 For tig 143 unique region 0 4578 - 0/ 9 reads repeat/unique - unitig 113149 created. For tig 143 repeat region 4578 18276 - 126/ 0 reads repeat/unique - unitig 113150 created. Annotating repeats in reads for tig 145/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 23269:26293 - contained in read 238054 20799- 30444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 148/113047. Annotated with 1472 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2620:9449 - closest 5' read 397155 ( +1944) 676:9205 ( -244) saved region 2620:9449 - closest 3' read 293760 ( -1619) 4239:13506 ( +4057) saved region 11158:16179 - closest 5' read 293759 ( +6141) 5017:13656 ( -2523) saved region 11158:16179 - closest 3' read 643832 ( -264) 11422:22606 ( +6427) saved region 20018:33496 - closest 5' read 597983 ( +4757) 15261:32858 ( -638) saved region 20018:33496 - closest 3' read 50064 ( -7918) 27936:35532 ( +2036) search for confused edges: tig 148 read 293759 pos 5017-13656 NOT confused by 5' edge to read 31648 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 1321 erate 0.0643 score 1236.06 - absdiff 2650.77 percdiff 103.4873 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 127603 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 2672 erate 0.0474 score 2545.35 - absdiff 1341.48 percdiff 41.7116 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 175693 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3917 erate 0.0553 score 3700.39 - absdiff 186.44 percdiff 4.9145 tig 148 read 293759 pos 5017-13656 NOT confused by 5' edge to read 198071 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 1199 erate 0.0677 score 1117.83 - absdiff 2769.00 percdiff 110.6570 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 280576 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3427 erate 0.0371 score 3299.86 - absdiff 586.97 percdiff 16.3349 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 311374 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 4032 erate 0.0459 score 3846.93 - absdiff 39.90 percdiff 1.0317 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 335604 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 2048 erate 0.0606 score 1923.89 - absdiff 1962.94 percdiff 67.5626 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 338205 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3936 erate 0.0471 score 3750.61 - absdiff 136.21 percdiff 3.5670 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 340261 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3982 erate 0.0349 score 3843.03 - absdiff 43.80 percdiff 1.1332 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 340263 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3950 erate 0.0261 score 3846.90 - absdiff 39.92 percdiff 1.0324 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 448733 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3957 erate 0.0386 score 3804.26 - absdiff 82.57 percdiff 2.1471 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 498322 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3957 erate 0.0276 score 3847.79 - absdiff 39.04 percdiff 1.0095 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 498472 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3950 erate 0.0355 score 3809.78 - absdiff 77.05 percdiff 2.0022 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 537046 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3958 erate 0.0362 score 3814.72 - absdiff 72.11 percdiff 1.8725 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 611765 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 4105 erate 0.0487 score 3905.09 - absdiff 18.26 percdiff 0.4687 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 688040 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3381 erate 0.0382 score 3251.85 - absdiff 634.98 percdiff 17.7899 tig 148 read 293759 pos 5017-13656 NOT confused by 5' edge to read 689184 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 1320 erate 0.0518 score 1251.62 - absdiff 2635.20 percdiff 102.5680 tig 148 read 293759 pos 5017-13656 IS confused by 5' edge to read 701935 - best edge read 397155 len 4110 erate 0.0543 score 3886.83 - alt edge len 3959 erate 0.0500 score 3761.05 - absdiff 125.78 percdiff 3.2892 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 122443 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 638 erate 0.0533 score 603.99 - absdiff 1582.88 percdiff 113.4328 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 122445 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 639 erate 0.0610 score 600.02 - absdiff 1586.86 percdiff 113.8797 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 642088 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 1986 erate 0.0373 score 1911.92 - absdiff 274.95 percdiff 13.4164 tig 148 read 643832 pos 11422-22606 IS confused by 5' edge to read 642089 - best edge read 293759 len 2310 erate 0.0533 score 2186.88 - alt edge len 1997 erate 0.0421 score 1912.93 - absdiff 273.95 percdiff 13.3641 tig 148 read 695103 pos 30176-38609 IS confused by 5' edge to read 300331 - best edge read 597983 len 1991 erate 0.0409 score 1909.57 - alt edge len 628 erate 0.0341 score 606.59 - absdiff 1302.98 percdiff 103.5694 tig 148 read 695103 pos 30176-38609 IS confused by 5' edge to read 516621 - best edge read 597983 len 1991 erate 0.0409 score 1909.57 - alt edge len 1249 erate 0.0357 score 1204.41 - absdiff 705.16 percdiff 45.2898 saved region 2620:9449 - 15 best edges are potentially confused saved region 11158:16179 - 4 best edges are potentially confused saved region 20018:33496 - 2 best edges are potentially confused break tig 148 into up to 7 pieces: 0 2120 unique (length 2120) 2120 9949 repeat (length 7829) 9949 10658 unique (length 709) 10658 16679 repeat (length 6021) 16679 19518 unique (length 2839) 19518 33996 repeat (length 14478) 33996 50873 unique (length 16877) Creating Unitig 113151 Creating Unitig 113152 Creating Unitig 113153 Creating Unitig 113154 Creating Unitig 113155 Creating Unitig 113156 Creating Unitig 113157 For tig 148 unique region 0 2120 - 0/ 2 reads repeat/unique - unitig 113151 created. For tig 148 repeat region 2120 9949 - 21/ 0 reads repeat/unique - unitig 113152 created. For tig 148 unique region 9949 10658 - 0/ 2 reads repeat/unique - unitig 113153 created. For tig 148 repeat region 10658 16679 - 20/ 0 reads repeat/unique - unitig 113154 created. For tig 148 unique region 16679 19518 - 0/ 17 reads repeat/unique - unitig 113155 created. For tig 148 repeat region 19518 33996 - 21/ 0 reads repeat/unique - unitig 113156 created. For tig 148 unique region 33996 50873 - 0/ 37 reads repeat/unique - unitig 113157 created. Annotating repeats in reads for tig 150/113047. Annotated with 192 overlaps. Scan reads to discard spanned repeats. discard region 0:10768 - contained in read 658346 0- 13166 discard region 23215:29200 - contained in read 343982 17953- 29200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 151/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1890:3403 - contained in read 179929 0- 5713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 152/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8108:15553 - closest 5' read 224221 ( +0) 8108:14936 ( -617) saved region 8108:15553 - closest 3' read 192518 ( -1387) 9495:15839 ( +286) search for confused edges: discard region 8108:15553 - no confusion in best edges Annotating repeats in reads for tig 153/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1715 - contained in read 244437 0- 6424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 157/113047. Annotated with 490 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2800:21308 - closest 5' read 716844 ( +2620) 180:8759 (-12549) saved region 2800:21308 - closest 3' read 422794 (-12545) 15345:21308 ( +0) search for confused edges: tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 40822 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 1080 erate 0.0621 score 1012.93 - absdiff 1942.99 percdiff 97.9118 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 130671 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 3011 erate 0.0526 score 2852.62 - absdiff 103.30 percdiff 3.5567 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 140414 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 2082 erate 0.0418 score 1994.97 - absdiff 960.95 percdiff 38.8191 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 140415 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 2081 erate 0.0414 score 1994.85 - absdiff 961.07 percdiff 38.8252 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 350785 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 3056 erate 0.0461 score 2915.12 - absdiff 40.80 percdiff 1.3899 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 481664 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 1456 erate 0.0657 score 1360.34 - absdiff 1595.58 percdiff 73.9333 tig 157 read 716844 pos 180-8759 IS confused by 5' edge to read 595206 - best edge read 52738 len 3103 erate 0.0474 score 2955.92 - alt edge len 1023 erate 0.0711 score 950.26 - absdiff 2005.65 percdiff 102.6912 tig 157 read 566357 pos 5383-11904 NOT confused by 3' edge to read 516254 - best edge read 52738 len 4796 erate 0.0579 score 4518.31 - alt edge len 2571 erate 0.0705 score 2389.74 - absdiff 2128.57 percdiff 61.6256 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 27915 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 2552 erate 0.0613 score 2395.56 - absdiff 562.26 percdiff 21.0058 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 40822 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1672 erate 0.0637 score 1565.49 - absdiff 1392.33 percdiff 61.5623 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 190042 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1926 erate 0.0556 score 1818.91 - absdiff 1138.91 percdiff 47.6856 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 230529 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1889 erate 0.0613 score 1773.20 - absdiff 1184.62 percdiff 50.0787 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 350785 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 2056 erate 0.0594 score 1933.87 - absdiff 1023.95 percdiff 41.8648 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 422794 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 2739 erate 0.0662 score 2557.68 - absdiff 400.14 percdiff 14.5098 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 590994 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1844 erate 0.0692 score 1716.40 - absdiff 1241.43 percdiff 53.1181 tig 157 read 52738 pos 5861-10896 IS confused by 3' edge to read 590995 - best edge read 716844 len 3105 erate 0.0474 score 2957.82 - alt edge len 1845 erate 0.0602 score 1733.93 - absdiff 1223.89 percdiff 52.1720 tig 157 read 291362 pos 9691-19243 IS confused by 5' edge to read 355429 - best edge read 627999 len 1820 erate 0.0621 score 1706.98 - alt edge len 912 erate 0.0520 score 864.58 - absdiff 842.40 percdiff 65.5170 tig 157 read 291362 pos 9691-19243 IS confused by 3' edge to read 443664 - best edge read 422794 len 2938 erate 0.0477 score 2797.86 - alt edge len 1041 erate 0.0712 score 966.88 - absdiff 1830.98 percdiff 97.2698 tig 157 read 291362 pos 9691-19243 IS confused by 3' edge to read 446342 - best edge read 422794 len 2938 erate 0.0477 score 2797.86 - alt edge len 2788 erate 0.0592 score 2622.95 - absdiff 174.91 percdiff 6.4532 tig 157 read 627999 pos 11004-16663 NOT confused by 3' edge to read 355429 - best edge read 323186 len 5538 erate 0.0312 score 5365.21 - alt edge len 682 erate 0.0634 score 638.76 - absdiff 4726.45 percdiff 157.4441 tig 157 read 627999 pos 11004-16663 NOT confused by 3' edge to read 355432 - best edge read 323186 len 5538 erate 0.0312 score 5365.21 - alt edge len 699 erate 0.0695 score 650.42 - absdiff 4714.79 percdiff 156.7514 tig 157 read 323186 pos 12131-17806 NOT confused by 5' edge to read 355429 - best edge read 312599 len 5597 erate 0.0267 score 5447.56 - alt edge len 749 erate 0.0604 score 703.76 - absdiff 4743.80 percdiff 154.2368 tig 157 read 323186 pos 12131-17806 NOT confused by 5' edge to read 355432 - best edge read 312599 len 5597 erate 0.0267 score 5447.56 - alt edge len 766 erate 0.0621 score 718.43 - absdiff 4729.13 percdiff 153.3939 saved region 2800:21308 - 18 best edges are potentially confused break tig 157 into up to 2 pieces: 0 2300 unique (length 2300) 2300 21308 repeat (length 19008) Creating Unitig 113158 Creating Unitig 113159 For tig 157 unique region 0 2300 - 0/ 3 reads repeat/unique - unitig 113158 created. For tig 157 repeat region 2300 21308 - 94/ 0 reads repeat/unique - unitig 113159 created. Annotating repeats in reads for tig 158/113047. Annotated with 80 overlaps. Scan reads to discard spanned repeats. discard region 6382:2790 - contained in read 316188 0- 4915 discard region 10076:10902 - contained in read 546588 1303- 13386 discard region 15073:18567 - contained in read 180641 13529- 20480 discard region 20584:22975 - contained in read 195078 17235- 38262 discard region 38161:39625 - contained in read 680506 35469- 42334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 159/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 421:1537 - contained in read 711442 0- 2702 discard region 8888:12973 - contained in read 114486 6799- 12973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 160/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2634:1659 - contained in read 353884 0- 6398 discard region 3479:5045 - contained in read 353884 0- 6398 discard region 7248:9010 - contained in read 177653 3428- 10046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 163/113047. Annotated with 92 overlaps. Scan reads to discard spanned repeats. discard region 24620:25630 - contained in read 135856 22779- 28786 thickest edges to the repeat regions: saved region 11917:20948 - closest 5' read 548232 ( +445) 11472:19543 ( -1405) saved region 11917:20948 - closest 3' read 300249 ( -5241) 17158:24026 ( +3078) saved region 22779:24182 - closest read 135856 ( +0) 22779:28786 ( +4604) (contained) saved region 22779:24182 - closest 5' read 135856 ( +0) 22779:28786 ( +4604) saved region 22779:24182 - closest 3' read 135856 ( +0) 22779:28786 ( +4604) search for confused edges: tig 163 read 548227 pos 11476-19543 IS confused by 5' edge to read 31806 - best edge read 300250 len 2341 erate 0.0205 score 2293.01 - alt edge len 1909 erate 0.0215 score 1867.96 - absdiff 425.05 percdiff 20.4305 tig 163 read 548227 pos 11476-19543 IS confused by 5' edge to read 31808 - best edge read 300250 len 2341 erate 0.0205 score 2293.01 - alt edge len 2306 erate 0.0160 score 2269.10 - absdiff 23.91 percdiff 1.0480 tig 163 read 548227 pos 11476-19543 IS confused by 5' edge to read 31809 - best edge read 300250 len 2341 erate 0.0205 score 2293.01 - alt edge len 2307 erate 0.0160 score 2270.09 - absdiff 22.92 percdiff 1.0046 saved region 11917:20948 - 3 best edges are potentially confused discard region 22779:24182 - no confusion in best edges break tig 163 into up to 3 pieces: 0 11417 unique (length 11417) 11417 21448 repeat (length 10031) 21448 43881 unique (length 22433) Creating Unitig 113160 Creating Unitig 113161 Creating Unitig 113162 For tig 163 unique region 0 11417 - 0/ 19 reads repeat/unique - unitig 113160 created. For tig 163 repeat region 11417 21448 - 47/ 0 reads repeat/unique - unitig 113161 created. For tig 163 unique region 21448 43881 - 0/ 40 reads repeat/unique - unitig 113162 created. Annotating repeats in reads for tig 168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 173/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 0:616 - contained in read 221588 0- 6414 discard region 1171:3701 - contained in read 221588 0- 6414 thickest edges to the repeat regions: saved region 10601:11508 - closest read 116074 ( +8448) 2153:11508 ( +0) (contained) saved region 10601:11508 - closest 5' read 116074 ( +8448) 2153:11508 ( +0) saved region 10601:11508 - closest 3' read 116074 ( +8448) 2153:11508 ( +0) search for confused edges: tig 173 read 510940 pos 10823-20972 IS confused by 3' edge to read 607540 - best edge read 116074 len 659 erate 0.0626 score 617.75 - alt edge len 502 erate 0.0340 score 484.93 - absdiff 132.81 percdiff 24.0894 saved region 10601:11508 - 1 best edges are potentially confused break tig 173 into up to 3 pieces: 0 10101 unique (length 10101) 10101 12008 repeat (length 1907) 12008 27590 unique (length 15582) Creating Unitig 113163 Creating Unitig 113164 For tig 173 unique region 0 10101 - 0/ 15 reads repeat/unique - unitig 113163 created. For tig 173 repeat region 10101 12008 - 0/ 0 repeat/unique reads - no new unitig created. For tig 173 unique region 12008 27590 - 0/ 18 reads repeat/unique - unitig 113164 created. Annotating repeats in reads for tig 177/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 43282:44145 - contained in read 638939 37062- 44839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 179/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 642:5746 - contained in read 111247 0- 7098 discard region 6686:13552 - contained in read 367754 4449- 13552 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 196/113047. Annotated with 164 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1269:7662 - closest 5' read 525367 ( +0) 1269:7655 ( -7) saved region 1269:7662 - closest 3' read 525368 ( -5) 1274:7662 ( +0) search for confused edges: tig 196 read 641400 pos 95-7007 NOT confused by 3' edge to read 27206 - best edge read 525367 len 5664 erate 0.0625 score 5310.00 - alt edge len 1268 erate 0.0710 score 1177.97 - absdiff 4132.03 percdiff 127.3750 tig 196 read 641400 pos 95-7007 NOT confused by 3' edge to read 262068 - best edge read 525367 len 5664 erate 0.0625 score 5310.00 - alt edge len 2399 erate 0.0521 score 2274.01 - absdiff 3035.99 percdiff 80.0628 tig 196 read 641400 pos 95-7007 NOT confused by 3' edge to read 262070 - best edge read 525367 len 5664 erate 0.0625 score 5310.00 - alt edge len 2597 erate 0.0626 score 2434.43 - absdiff 2875.57 percdiff 74.2617 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 27206 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 1905 erate 0.0578 score 1794.89 - absdiff 4396.01 percdiff 110.0958 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 262068 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 3033 erate 0.0458 score 2894.09 - absdiff 3296.81 percdiff 72.5771 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 262070 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 3230 erate 0.0511 score 3064.95 - absdiff 3125.95 percdiff 67.5455 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 316552 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 851 erate 0.0588 score 800.96 - absdiff 5389.94 percdiff 154.1775 tig 196 read 525367 pos 1269-7655 NOT confused by 3' edge to read 379026 - best edge read 525369 len 6364 erate 0.0272 score 6190.90 - alt edge len 1072 erate 0.0589 score 1008.86 - absdiff 5182.04 percdiff 143.9504 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 27206 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 1902 erate 0.0663 score 1775.90 - absdiff 4437.82 percdiff 111.0897 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 35386 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1299 erate 0.0628 score 1217.42 - absdiff 4973.48 percdiff 134.2673 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 35387 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1297 erate 0.0595 score 1219.83 - absdiff 4971.07 percdiff 134.1588 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 231909 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1049 erate 0.0631 score 982.81 - absdiff 5208.09 percdiff 145.1994 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 231910 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1062 erate 0.0708 score 986.81 - absdiff 5204.09 percdiff 145.0069 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 247879 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 2918 erate 0.0567 score 2752.55 - absdiff 3438.35 percdiff 76.8909 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 262068 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 3034 erate 0.0508 score 2879.87 - absdiff 3333.85 percdiff 73.3230 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 262070 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 3233 erate 0.0591 score 3041.93 - absdiff 3171.79 percdiff 68.5374 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 316552 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 848 erate 0.0696 score 788.98 - absdiff 5424.74 percdiff 154.9329 tig 196 read 525369 pos 1270-7656 NOT confused by 3' edge to read 379026 - best edge read 525368 len 6360 erate 0.0230 score 6213.72 - alt edge len 1070 erate 0.0682 score 997.03 - absdiff 5216.69 percdiff 144.6922 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 489155 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1281 erate 0.0587 score 1205.81 - absdiff 4985.09 percdiff 134.7923 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 519267 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1006 erate 0.0419 score 963.85 - absdiff 5227.05 percdiff 146.1142 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 600399 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 1182 erate 0.0721 score 1096.78 - absdiff 5094.12 percdiff 139.8010 tig 196 read 525369 pos 1270-7656 NOT confused by 5' edge to read 677214 - best edge read 525367 len 6364 erate 0.0272 score 6190.90 - alt edge len 2034 erate 0.0527 score 1926.81 - absdiff 4264.09 percdiff 105.0565 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 35386 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1294 erate 0.0639 score 1211.31 - absdiff 4996.54 percdiff 134.6928 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 35387 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1292 erate 0.0596 score 1215.00 - absdiff 4992.86 percdiff 134.5267 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 231909 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1043 erate 0.0663 score 973.85 - absdiff 5234.01 percdiff 145.7595 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 231910 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1057 erate 0.0729 score 979.94 - absdiff 5227.91 percdiff 145.4662 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 247879 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 2909 erate 0.0688 score 2708.86 - absdiff 3499.00 percdiff 78.4817 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 362081 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1082 erate 0.0701 score 1006.15 - absdiff 5201.71 percdiff 144.2112 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 489155 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1276 erate 0.0612 score 1197.91 - absdiff 5009.95 percdiff 135.2986 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 519267 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1000 erate 0.0460 score 954.00 - absdiff 5253.86 percdiff 146.7177 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 600399 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 1179 erate 0.0738 score 1091.99 - absdiff 5115.87 percdiff 140.1637 tig 196 read 525368 pos 1274-7662 NOT confused by 3' edge to read 677214 - best edge read 525369 len 6354 erate 0.0230 score 6207.86 - alt edge len 2030 erate 0.0598 score 1908.61 - absdiff 4299.25 percdiff 105.9390 discard region 1269:7662 - no confusion in best edges Annotating repeats in reads for tig 197/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 8437:14631 - contained in read 657576 852- 14631 thickest edges to the repeat regions: saved region 735:5756 - closest read 309149 ( +0) 735:5756 ( +0) (contained) saved region 735:5756 - closest 5' read 309149 ( +0) 735:5756 ( +0) saved region 735:5756 - closest 3' read 309149 ( +0) 735:5756 ( +0) search for confused edges: tig 197 read 657577 pos 842-14565 NOT confused by 3' edge to read 689426 - best edge read 223277 len 3308 erate 0.0526 score 3134.00 - alt edge len 981 erate 0.0449 score 936.95 - absdiff 2197.05 percdiff 107.9377 discard region 735:5756 - no confusion in best edges Annotating repeats in reads for tig 201/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8651:9535 - contained in read 32638 1416- 11239 thickest edges to the repeat regions: saved region 26589:27796 - closest read 510482 ( +0) 26589:31317 ( +3521) (contained) saved region 26589:27796 - closest 5' read 510482 ( +0) 26589:31317 ( +3521) saved region 26589:27796 - closest 3' read 510482 ( +0) 26589:31317 ( +3521) search for confused edges: discard region 26589:27796 - no confusion in best edges Annotating repeats in reads for tig 202/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9428:10234 - contained in read 294904 2092- 11318 discard region 21315:22052 - contained in read 33332 14999- 25428 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 205/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 3095:7673 - contained in read 43120 0- 8993 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 206/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 13837:14390 - contained in read 706800 13063- 17746 thickest edges to the repeat regions: saved region 2373:11073 - closest 5' read 713084 ( +274) 2099:9317 ( -1756) saved region 2373:11073 - closest 3' read 121563 ( -4920) 7293:11073 ( +0) search for confused edges: tig 206 read 720864 pos 0-8262 NOT confused by 3' edge to read 466277 - best edge read 140335 len 5517 erate 0.0508 score 5236.74 - alt edge len 1882 erate 0.0680 score 1754.02 - absdiff 3482.71 percdiff 99.6376 tig 206 read 140335 pos 2556-9874 NOT confused by 3' edge to read 133048 - best edge read 140334 len 7140 erate 0.0173 score 7016.48 - alt edge len 849 erate 0.0649 score 793.90 - absdiff 6222.58 percdiff 159.3413 tig 206 read 140335 pos 2556-9874 NOT confused by 3' edge to read 434852 - best edge read 140334 len 7140 erate 0.0173 score 7016.48 - alt edge len 697 erate 0.0549 score 658.73 - absdiff 6357.74 percdiff 165.6695 tig 206 read 140335 pos 2556-9874 NOT confused by 3' edge to read 482947 - best edge read 140334 len 7140 erate 0.0173 score 7016.48 - alt edge len 618 erate 0.0391 score 593.84 - absdiff 6422.64 percdiff 168.7878 tig 206 read 140335 pos 2556-9874 NOT confused by 5' edge to read 698627 - best edge read 720864 len 5688 erate 0.0508 score 5399.05 - alt edge len 1172 erate 0.0519 score 1111.17 - absdiff 4287.88 percdiff 131.7275 tig 206 read 140334 pos 2657-9886 NOT confused by 5' edge to read 434852 - best edge read 302402 len 6601 erate 0.0138 score 6509.91 - alt edge len 716 erate 0.0592 score 673.61 - absdiff 5836.29 percdiff 162.4912 tig 206 read 302402 pos 3198-10959 IS confused by 3' edge to read 133048 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1925 erate 0.0370 score 1853.77 - absdiff 1631.97 percdiff 61.1279 tig 206 read 302402 pos 3198-10959 NOT confused by 3' edge to read 242854 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1122 erate 0.0451 score 1071.40 - absdiff 2414.34 percdiff 105.9588 tig 206 read 302402 pos 3198-10959 NOT confused by 3' edge to read 242855 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1139 erate 0.0430 score 1090.02 - absdiff 2395.72 percdiff 104.7134 tig 206 read 302402 pos 3198-10959 IS confused by 3' edge to read 441601 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1528 erate 0.0652 score 1428.37 - absdiff 2057.37 percdiff 83.7330 tig 206 read 302402 pos 3198-10959 IS confused by 3' edge to read 453698 - best edge read 121563 len 3598 erate 0.0312 score 3485.74 - alt edge len 1527 erate 0.0452 score 1457.98 - absdiff 2027.76 percdiff 82.0339 tig 206 read 302402 pos 3198-10959 NOT confused by 5' edge to read 698627 - best edge read 140334 len 6613 erate 0.0138 score 6521.74 - alt edge len 536 erate 0.0284 score 520.78 - absdiff 6000.96 percdiff 170.4209 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 192472 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 884 erate 0.0611 score 829.99 - absdiff 1083.88 percdiff 79.0041 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 192473 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 888 erate 0.0664 score 829.04 - absdiff 1084.83 percdiff 79.1008 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 192476 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 889 erate 0.0607 score 835.04 - absdiff 1078.83 percdiff 78.4916 tig 206 read 572509 pos 9025-12359 IS confused by 3' edge to read 506953 - best edge read 121563 len 2003 erate 0.0445 score 1913.87 - alt edge len 935 erate 0.0610 score 877.97 - absdiff 1035.90 percdiff 74.2095 saved region 2373:11073 - 7 best edges are potentially confused break tig 206 into up to 3 pieces: 0 1873 unique (length 1873) 1873 11573 repeat (length 9700) 11573 29008 unique (length 17435) Creating Unitig 113165 Creating Unitig 113166 Creating Unitig 113167 For tig 206 unique region 0 1873 - 0/ 3 reads repeat/unique - unitig 113165 created. For tig 206 repeat region 1873 11573 - 46/ 0 reads repeat/unique - unitig 113166 created. For tig 206 unique region 11573 29008 - 0/ 21 reads repeat/unique - unitig 113167 created. Annotating repeats in reads for tig 207/113047. Annotated with 145 overlaps. Scan reads to discard spanned repeats. discard region 36185:37746 - contained in read 545180 35359- 42080 discard region 43111:45005 - contained in read 520339 40688- 46205 thickest edges to the repeat regions: saved region 13311:26297 - closest 5' read 621433 ( +2197) 11114:17086 ( -9211) saved region 13311:26297 - closest 3' read 310135 ( -6490) 19801:26297 ( +0) saved region 40537:43157 - closest 5' read 545180 ( +5178) 35359:42080 ( -1077) saved region 40537:43157 - closest 3' read 520339 ( -151) 40688:46205 ( +3048) search for confused edges: tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 430308 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2649 erate 0.0279 score 2575.09 - absdiff 937.77 percdiff 30.8073 tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 430309 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2658 erate 0.0279 score 2583.84 - absdiff 929.02 percdiff 30.4761 tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 430310 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2629 erate 0.0282 score 2554.86 - absdiff 958.00 percdiff 31.5769 tig 207 read 621430 pos 11117-17081 IS confused by 5' edge to read 688789 - best edge read 195650 len 3623 erate 0.0304 score 3512.86 - alt edge len 2869 erate 0.0279 score 2788.95 - absdiff 723.91 percdiff 22.9745 tig 207 read 195650 pos 13430-17905 NOT confused by 3' edge to read 24513 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1111 erate 0.0501 score 1055.34 - absdiff 2432.31 percdiff 107.0798 tig 207 read 195650 pos 13430-17905 IS confused by 3' edge to read 51110 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1782 erate 0.0343 score 1720.88 - absdiff 1766.77 percdiff 67.8416 tig 207 read 195650 pos 13430-17905 IS confused by 3' edge to read 51111 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1734 erate 0.0352 score 1672.96 - absdiff 1814.69 percdiff 70.3284 tig 207 read 195650 pos 13430-17905 IS confused by 3' edge to read 51112 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1790 erate 0.0330 score 1730.93 - absdiff 1756.72 percdiff 67.3256 tig 207 read 195650 pos 13430-17905 NOT confused by 3' edge to read 70681 - best edge read 621430 len 3597 erate 0.0304 score 3487.65 - alt edge len 1130 erate 0.0504 score 1073.05 - absdiff 2414.60 percdiff 105.8874 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 430308 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3465 erate 0.0624 score 3248.78 - absdiff 526.26 percdiff 14.9849 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 430309 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3474 erate 0.0628 score 3255.83 - absdiff 519.21 percdiff 14.7694 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 430310 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3445 erate 0.0653 score 3220.04 - absdiff 555.00 percdiff 15.8683 tig 207 read 195650 pos 13430-17905 IS confused by 5' edge to read 688789 - best edge read 527573 len 3988 erate 0.0534 score 3775.04 - alt edge len 3688 erate 0.0586 score 3471.88 - absdiff 303.16 percdiff 8.3665 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 24513 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 669 erate 0.0413 score 641.37 - absdiff 3098.65 percdiff 141.4459 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 51110 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 1346 erate 0.0254 score 1311.81 - absdiff 2428.20 percdiff 96.1317 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 51111 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 1298 erate 0.0293 score 1259.97 - absdiff 2480.05 percdiff 99.2022 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 51112 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 1354 erate 0.0274 score 1316.90 - absdiff 2423.12 percdiff 95.8337 tig 207 read 527573 pos 13886-19095 NOT confused by 3' edge to read 70681 - best edge read 195650 len 3951 erate 0.0534 score 3740.02 - alt edge len 688 erate 0.0436 score 658.00 - absdiff 3082.01 percdiff 140.1546 tig 207 read 310135 pos 19801-26297 NOT confused by 3' edge to read 527896 - best edge read 125209 len 4122 erate 0.0310 score 3994.22 - alt edge len 706 erate 0.0486 score 671.69 - absdiff 3322.53 percdiff 142.4173 tig 207 read 545180 pos 35359-42080 IS confused by 3' edge to read 153997 - best edge read 520339 len 1387 erate 0.0513 score 1315.85 - alt edge len 681 erate 0.0721 score 631.90 - absdiff 683.95 percdiff 70.2296 saved region 13311:26297 - 11 best edges are potentially confused saved region 40537:43157 - 1 best edges are potentially confused break tig 207 into up to 5 pieces: 0 12811 unique (length 12811) 12811 26797 repeat (length 13986) 26797 40037 unique (length 13240) 40037 43657 repeat (length 3620) 43657 46205 unique (length 2548) Creating Unitig 113168 Creating Unitig 113169 Creating Unitig 113170 Creating Unitig 113171 Creating Unitig 113172 For tig 207 unique region 0 12811 - 0/ 24 reads repeat/unique - unitig 113168 created. For tig 207 repeat region 12811 26797 - 39/ 0 reads repeat/unique - unitig 113169 created. For tig 207 unique region 26797 40037 - 0/ 12 reads repeat/unique - unitig 113170 created. For tig 207 repeat region 40037 43657 - 1/ 0 reads repeat/unique - unitig 113171 created. For tig 207 unique region 43657 46205 - 0/ 5 reads repeat/unique - unitig 113172 created. Annotating repeats in reads for tig 208/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4880:19108 - closest 5' read 657005 ( +1086) 3794:13030 ( -6078) saved region 4880:19108 - closest 3' read 441600 ( -5202) 10082:19640 ( +532) search for confused edges: tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 73634 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1671 erate 0.0449 score 1595.97 - absdiff 5172.69 percdiff 123.6800 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 73636 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1689 erate 0.0361 score 1628.03 - absdiff 5140.64 percdiff 122.4444 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 73637 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1696 erate 0.0578 score 1597.97 - absdiff 5170.69 percdiff 123.6027 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 86838 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1592 erate 0.0635 score 1490.91 - absdiff 5277.76 percdiff 127.7973 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 275648 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 594 erate 0.0741 score 549.98 - absdiff 6218.68 percdiff 169.9407 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 467586 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1577 erate 0.0349 score 1521.96 - absdiff 5246.70 percdiff 126.5695 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 467587 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1566 erate 0.0319 score 1516.04 - absdiff 5252.62 percdiff 126.8028 tig 208 read 657005 pos 3794-13030 NOT confused by 5' edge to read 467588 - best edge read 514862 len 7190 erate 0.0586 score 6768.67 - alt edge len 1572 erate 0.0305 score 1524.05 - absdiff 5244.61 percdiff 126.4871 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 73634 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4502 erate 0.0463 score 4293.56 - absdiff 4366.35 percdiff 67.4160 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 73636 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4520 erate 0.0377 score 4349.60 - absdiff 4310.31 percdiff 66.2641 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 73637 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4527 erate 0.0607 score 4252.21 - absdiff 4407.70 percdiff 68.2723 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 467586 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4408 erate 0.0373 score 4243.58 - absdiff 4416.33 percdiff 68.4517 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 467587 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4396 erate 0.0353 score 4240.82 - absdiff 4419.09 percdiff 68.5091 tig 208 read 514862 pos 5756-15911 NOT confused by 3' edge to read 467588 - best edge read 204611 len 9133 erate 0.0518 score 8659.91 - alt edge len 4403 erate 0.0374 score 4238.33 - absdiff 4421.58 percdiff 68.5610 tig 208 read 204611 pos 6517-15964 NOT confused by 3' edge to read 553063 - best edge read 514862 len 9190 erate 0.0518 score 8713.96 - alt edge len 758 erate 0.0106 score 749.97 - absdiff 7963.99 percdiff 168.3021 discard region 4880:19108 - no confusion in best edges Annotating repeats in reads for tig 212/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12415:20075 - closest 5' read 219119 ( +325) 12090:17655 ( -2420) saved region 12415:20075 - closest 3' read 5296 ( -298) 12713:22019 ( +1944) search for confused edges: discard region 12415:20075 - no confusion in best edges Annotating repeats in reads for tig 216/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 7145:13562 - contained in read 16726 81- 14554 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 217/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3722:7062 - contained in read 152635 2956- 8471 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 220/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 0:2659 - contained in read 109946 0- 8005 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 221/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 18635:19469 - contained in read 79666 6708- 21561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 223/113047. Annotated with 547 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17291:34505 - closest 5' read 20162 ( +9752) 7539:18084 (-16421) saved region 17291:34505 - closest 3' read 716002 (-10578) 27869:36082 ( +1577) saved region 39937:48259 - closest 5' read 529111 ( +0) 39937:46223 ( -2036) saved region 39937:48259 - closest 3' read 183839 ( -201) 40138:49012 ( +753) search for confused edges: tig 223 read 534111 pos 17563-26075 NOT confused by 5' edge to read 716005 - best edge read 295107 len 7193 erate 0.0136 score 7095.18 - alt edge len 4098 erate 0.0211 score 4011.53 - absdiff 3083.64 percdiff 55.5276 tig 223 read 287067 pos 17649-32522 NOT confused by 3' edge to read 142579 - best edge read 295107 len 8527 erate 0.0133 score 8413.59 - alt edge len 3212 erate 0.0273 score 3124.31 - absdiff 5289.28 percdiff 91.6853 tig 223 read 287067 pos 17649-32522 NOT confused by 3' edge to read 211233 - best edge read 295107 len 8527 erate 0.0133 score 8413.59 - alt edge len 5877 erate 0.0131 score 5800.01 - absdiff 2613.58 percdiff 36.7758 tig 223 read 295107 pos 19795-28420 NOT confused by 5' edge to read 142579 - best edge read 534111 len 7146 erate 0.0136 score 7048.81 - alt edge len 3281 erate 0.0211 score 3211.77 - absdiff 3837.04 percdiff 74.7919 tig 223 read 295107 pos 19795-28420 IS confused by 5' edge to read 211233 - best edge read 534111 len 7146 erate 0.0136 score 7048.81 - alt edge len 5948 erate 0.0091 score 5893.87 - absdiff 1154.94 percdiff 17.8470 tig 223 read 295107 pos 19795-28420 NOT confused by 3' edge to read 334386 - best edge read 287067 len 8502 erate 0.0133 score 8388.92 - alt edge len 816 erate 0.0135 score 804.98 - absdiff 7583.94 percdiff 164.9775 tig 223 read 295107 pos 19795-28420 NOT confused by 3' edge to read 385150 - best edge read 287067 len 8502 erate 0.0133 score 8388.92 - alt edge len 652 erate 0.0263 score 634.85 - absdiff 7754.07 percdiff 171.8587 tig 223 read 716005 pos 27872-36097 NOT confused by 3' edge to read 211233 - best edge read 295107 len 5551 erate 0.0187 score 5447.20 - alt edge len 2885 erate 0.0185 score 2831.63 - absdiff 2615.57 percdiff 63.1870 tig 223 read 716005 pos 27872-36097 IS confused by 3' edge to read 534111 - best edge read 295107 len 5551 erate 0.0187 score 5447.20 - alt edge len 4086 erate 0.0211 score 3999.79 - absdiff 1447.41 percdiff 30.6428 tig 223 read 261239 pos 38015-44043 IS confused by 5' edge to read 310540 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 1694 erate 0.0414 score 1623.87 - absdiff 2036.10 percdiff 77.0689 tig 223 read 261239 pos 38015-44043 NOT confused by 5' edge to read 390760 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 747 erate 0.0598 score 702.33 - absdiff 2957.64 percdiff 135.6000 tig 223 read 261239 pos 38015-44043 IS confused by 5' edge to read 607104 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 1990 erate 0.0312 score 1927.91 - absdiff 1732.05 percdiff 61.9933 tig 223 read 261239 pos 38015-44043 IS confused by 5' edge to read 632050 - best edge read 183839 len 3788 erate 0.0338 score 3659.97 - alt edge len 3766 erate 0.0333 score 3640.59 - absdiff 19.37 percdiff 0.5307 saved region 17291:34505 - 2 best edges are potentially confused saved region 39937:48259 - 3 best edges are potentially confused break tig 223 into up to 5 pieces: 0 16791 unique (length 16791) 16791 35005 repeat (length 18214) 35005 39437 unique (length 4432) 39437 48759 repeat (length 9322) 48759 53107 unique (length 4348) Creating Unitig 113173 Creating Unitig 113174 Creating Unitig 113175 Creating Unitig 113176 Creating Unitig 113177 For tig 223 unique region 0 16791 - 0/ 16 reads repeat/unique - unitig 113173 created. For tig 223 repeat region 16791 35005 - 53/ 0 reads repeat/unique - unitig 113174 created. For tig 223 unique region 35005 39437 - 0/ 13 reads repeat/unique - unitig 113175 created. For tig 223 repeat region 39437 48759 - 33/ 0 reads repeat/unique - unitig 113176 created. For tig 223 unique region 48759 53107 - 0/ 8 reads repeat/unique - unitig 113177 created. Annotating repeats in reads for tig 225/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 3391:10049 - contained in read 440985 1289- 10049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 226/113047. Annotated with 2893 overlaps. Scan reads to discard spanned repeats. discard region 23539:22501 - contained in read 597630 19551- 27264 thickest edges to the repeat regions: saved region 0:21013 - closest 5' read 653095 ( +0) 0:16421 ( -4592) saved region 0:21013 - closest 3' read 563797 (-14068) 14068:21013 ( +0) search for confused edges: tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 348202 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 5088 erate 0.0201 score 4985.73 - absdiff 6802.98 percdiff 81.1113 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 460113 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 1327 erate 0.0723 score 1231.06 - absdiff 10557.65 percdiff 162.1788 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 526515 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 1332 erate 0.0638 score 1247.02 - absdiff 10541.69 percdiff 161.7354 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 527438 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 1089 erate 0.0619 score 1021.59 - absdiff 10767.12 percdiff 168.1010 tig 226 read 653095 pos 0-16421 NOT confused by 3' edge to read 550681 - best edge read 583971 len 12065 erate 0.0229 score 11788.71 - alt edge len 2828 erate 0.0372 score 2722.80 - absdiff 9065.91 percdiff 124.9479 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 348202 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 2783 erate 0.0572 score 2623.81 - absdiff 3899.89 percdiff 85.2667 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 526515 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 1089 erate 0.0661 score 1017.02 - absdiff 5506.69 percdiff 146.0520 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 527438 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 851 erate 0.0576 score 801.98 - absdiff 5721.72 percdiff 156.2098 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 527442 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 847 erate 0.0614 score 794.99 - absdiff 5728.71 percdiff 156.5500 tig 226 read 503812 pos 4150-11186 NOT confused by 3' edge to read 550681 - best edge read 503811 len 6862 erate 0.0493 score 6523.70 - alt edge len 2542 erate 0.0626 score 2382.87 - absdiff 4140.83 percdiff 92.9837 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 102943 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 4485 erate 0.0292 score 4354.04 - absdiff 7443.47 percdiff 92.1704 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 147129 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1439 erate 0.0702 score 1337.98 - absdiff 10459.52 percdiff 159.2560 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 318714 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 4851 erate 0.0247 score 4731.18 - absdiff 7066.33 percdiff 85.5038 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 361822 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 965 erate 0.0589 score 908.16 - absdiff 10889.34 percdiff 171.4092 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 361823 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1470 erate 0.0489 score 1398.12 - absdiff 10399.39 percdiff 157.6188 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 373854 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1110 erate 0.0523 score 1051.95 - absdiff 10745.56 percdiff 167.2532 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 543826 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1471 erate 0.0401 score 1412.01 - absdiff 10385.49 percdiff 157.2426 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 543827 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1640 erate 0.0662 score 1531.43 - absdiff 10266.07 percdiff 154.0419 tig 226 read 583971 pos 4916-19134 NOT confused by 5' edge to read 550681 - best edge read 493596 len 9961 erate 0.0402 score 9560.57 - alt edge len 1614 erate 0.0549 score 1525.39 - absdiff 8035.18 percdiff 144.9613 tig 226 read 583971 pos 4916-19134 NOT confused by 3' edge to read 588149 - best edge read 653095 len 12074 erate 0.0229 score 11797.51 - alt edge len 1211 erate 0.0621 score 1135.80 - absdiff 10661.71 percdiff 164.8722 tig 226 read 503811 pos 5035-12140 IS confused by 5' edge to read 348202 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 4960 erate 0.0488 score 4717.95 - absdiff 950.63 percdiff 18.3051 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 460113 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 1601 erate 0.0712 score 1487.01 - absdiff 4181.58 percdiff 116.8757 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 526515 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 1111 erate 0.0685 score 1034.90 - absdiff 4633.69 percdiff 138.2472 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 527438 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 872 erate 0.0574 score 821.95 - absdiff 4846.64 percdiff 149.3448 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 527442 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 868 erate 0.0588 score 816.96 - absdiff 4851.62 percdiff 149.6134 tig 226 read 503811 pos 5035-12140 NOT confused by 5' edge to read 550681 - best edge read 653095 len 6024 erate 0.0590 score 5668.58 - alt edge len 2578 erate 0.0551 score 2435.95 - absdiff 3232.63 percdiff 79.7734 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 102943 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 2272 erate 0.0563 score 2144.09 - absdiff 5177.77 percdiff 109.3979 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 318714 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 2628 erate 0.0639 score 2460.07 - absdiff 4861.79 percdiff 99.4035 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 361823 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 1459 erate 0.0686 score 1358.91 - absdiff 5962.95 percdiff 137.3829 tig 226 read 191090 pos 5145-13227 NOT confused by 5' edge to read 543826 - best edge read 226532 len 6760 erate 0.0589 score 6361.84 - alt edge len 1564 erate 0.0682 score 1457.34 - absdiff 4904.50 percdiff 125.4481 tig 226 read 191090 pos 5145-13227 IS confused by 3' edge to read 550681 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 5777 erate 0.0456 score 5513.57 - absdiff 1808.29 percdiff 28.1766 tig 226 read 191090 pos 5145-13227 NOT confused by 3' edge to read 563801 - best edge read 702749 len 7748 erate 0.0550 score 7321.86 - alt edge len 1759 erate 0.0625 score 1649.06 - absdiff 5672.80 percdiff 126.4708 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 102943 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 5257 erate 0.0311 score 5093.51 - absdiff 4462.26 percdiff 60.9213 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 318714 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 6626 erate 0.0223 score 6478.24 - absdiff 3077.53 percdiff 38.3875 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 373854 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 1224 erate 0.0612 score 1149.09 - absdiff 8406.68 percdiff 157.0628 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 532025 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 823 erate 0.0622 score 771.81 - absdiff 8783.96 percdiff 170.1069 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 543826 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 915 erate 0.0514 score 867.97 - absdiff 8687.80 percdiff 166.6926 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 543827 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 1589 erate 0.0560 score 1500.02 - absdiff 8055.75 percdiff 145.7292 tig 226 read 493596 pos 7701-18214 NOT confused by 5' edge to read 588149 - best edge read 583971 len 9956 erate 0.0402 score 9555.77 - alt edge len 1831 erate 0.0644 score 1713.08 - absdiff 7842.69 percdiff 139.1923 tig 226 read 285999 pos 8665-17918 NOT confused by 3' edge to read 102943 - best edge read 493596 len 8262 erate 0.0505 score 7844.77 - alt edge len 5237 erate 0.0321 score 5068.89 - absdiff 2775.88 percdiff 42.9913 tig 226 read 285999 pos 8665-17918 IS confused by 3' edge to read 318714 - best edge read 493596 len 8262 erate 0.0505 score 7844.77 - alt edge len 5939 erate 0.0285 score 5769.74 - absdiff 2075.03 percdiff 30.4826 tig 226 read 285999 pos 8665-17918 NOT confused by 5' edge to read 550681 - best edge read 226533 len 6966 erate 0.0458 score 6646.96 - alt edge len 2780 erate 0.0520 score 2635.44 - absdiff 4011.52 percdiff 86.4328 tig 226 read 226533 pos 9339-18414 NOT confused by 3' edge to read 102943 - best edge read 285999 len 7043 erate 0.0458 score 6720.43 - alt edge len 3629 erate 0.0497 score 3448.64 - absdiff 3271.79 percdiff 64.3479 tig 226 read 226533 pos 9339-18414 NOT confused by 3' edge to read 318714 - best edge read 285999 len 7043 erate 0.0458 score 6720.43 - alt edge len 2995 erate 0.0551 score 2829.98 - absdiff 3890.46 percdiff 81.4720 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 361822 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 794 erate 0.0651 score 742.31 - absdiff 7617.75 percdiff 167.3795 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 361823 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 965 erate 0.0558 score 911.15 - absdiff 7448.91 percdiff 160.6890 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 373854 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1278 erate 0.0611 score 1199.91 - absdiff 7160.15 percdiff 149.7943 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 440441 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1766 erate 0.0513 score 1675.40 - absdiff 6684.66 percdiff 133.2207 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 543826 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1134 erate 0.0477 score 1079.91 - absdiff 7280.16 percdiff 154.2410 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 543827 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 1306 erate 0.0641 score 1222.29 - absdiff 7137.78 percdiff 148.9776 tig 226 read 226533 pos 9339-18414 NOT confused by 5' edge to read 550681 - best edge read 226532 len 8657 erate 0.0343 score 8360.06 - alt edge len 4737 erate 0.0530 score 4485.94 - absdiff 3874.13 percdiff 60.3164 tig 226 read 226532 pos 9540-18350 NOT confused by 5' edge to read 102943 - best edge read 226533 len 8696 erate 0.0343 score 8397.73 - alt edge len 2515 erate 0.0525 score 2382.96 - absdiff 6014.76 percdiff 111.5840 tig 226 read 226532 pos 9540-18350 NOT confused by 5' edge to read 318714 - best edge read 226533 len 8696 erate 0.0343 score 8397.73 - alt edge len 3553 erate 0.0428 score 3400.93 - absdiff 4996.80 percdiff 84.7011 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 361822 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1311 erate 0.0698 score 1219.49 - absdiff 5305.15 percdiff 137.0108 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 361823 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1312 erate 0.0618 score 1230.92 - absdiff 5293.73 percdiff 136.5143 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 373854 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1286 erate 0.0645 score 1203.05 - absdiff 5321.59 percdiff 137.7278 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 532025 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 551 erate 0.0631 score 516.23 - absdiff 6008.41 percdiff 170.6723 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 543826 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1142 erate 0.0552 score 1078.96 - absdiff 5445.68 percdiff 143.2395 tig 226 read 226532 pos 9540-18350 NOT confused by 3' edge to read 543827 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 1482 erate 0.0645 score 1386.41 - absdiff 5138.24 percdiff 129.9001 tig 226 read 226532 pos 9540-18350 IS confused by 3' edge to read 550681 - best edge read 191090 len 6933 erate 0.0589 score 6524.65 - alt edge len 4759 erate 0.0566 score 4489.64 - absdiff 2035.01 percdiff 36.9521 saved region 0:21013 - 4 best edges are potentially confused break tig 226 into up to 2 pieces: 0 21513 repeat (length 21513) 21513 39378 unique (length 17865) Creating Unitig 113178 Creating Unitig 113179 For tig 226 repeat region 0 21513 - 515/ 0 reads repeat/unique - unitig 113178 created. For tig 226 unique region 21513 39378 - 0/ 17 reads repeat/unique - unitig 113179 created. Annotating repeats in reads for tig 228/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 16354:20634 - contained in read 553063 12597- 20634 thickest edges to the repeat regions: saved region 10470:13104 - closest read 690323 ( +139) 10331:14551 ( +1447) (contained) saved region 10470:13104 - closest read 533769 ( +11) 10459:13686 ( +582) (contained) saved region 10470:13104 - closest read 168851 ( +0) 10470:14081 ( +977) (contained) saved region 10470:13104 - closest 5' read 690323 ( +139) 10331:14551 ( +1447) saved region 10470:13104 - closest 3' read 690323 ( +139) 10331:14551 ( +1447) search for confused edges: discard region 10470:13104 - no confusion in best edges Annotating repeats in reads for tig 241/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 29097:31013 - contained in read 408386 20212- 33296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 244/113047. Annotated with 1281 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 29103:31291 - closest read 399565 ( +7236) 21867:31420 ( +129) (contained) saved region 29103:31291 - closest 5' read 399565 ( +7236) 21867:31420 ( +129) saved region 29103:31291 - closest 3' read 399565 ( +7236) 21867:31420 ( +129) saved region 32298:44832 - closest 5' read 237114 ( +2337) 29961:36057 ( -8775) saved region 32298:44832 - closest 3' read 340260 ( -5779) 38077:45721 ( +889) search for confused edges: tig 244 read 649937 pos 29183-35991 IS confused by 5' edge to read 153501 - best edge read 559084 len 2377 erate 0.0420 score 2277.17 - alt edge len 2184 erate 0.0696 score 2031.99 - absdiff 245.17 percdiff 11.3791 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 36446 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3291 erate 0.0708 score 3058.00 - absdiff 3244.95 percdiff 69.3296 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 61530 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3489 erate 0.0646 score 3263.61 - absdiff 3039.34 percdiff 63.5409 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 112243 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3466 erate 0.0563 score 3270.86 - absdiff 3032.09 percdiff 63.3412 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 127603 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 2174 erate 0.0614 score 2040.52 - absdiff 4262.43 percdiff 102.1742 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 198071 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 697 erate 0.0552 score 658.53 - absdiff 5644.42 percdiff 162.1617 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 280576 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 2933 erate 0.0581 score 2762.59 - absdiff 3540.36 percdiff 78.1058 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 311374 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3537 erate 0.0690 score 3292.95 - absdiff 3010.00 percdiff 62.7352 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 335606 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 1556 erate 0.0687 score 1449.10 - absdiff 4853.85 percdiff 125.2274 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 448733 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3457 erate 0.0604 score 3248.20 - absdiff 3054.75 percdiff 63.9662 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 498322 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3458 erate 0.0532 score 3274.03 - absdiff 3028.92 percdiff 63.2541 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 498472 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3453 erate 0.0613 score 3241.33 - absdiff 3061.62 percdiff 64.1561 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 498473 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3477 erate 0.0621 score 3261.08 - absdiff 3041.87 percdiff 63.6107 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 509401 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 1917 erate 0.0657 score 1791.05 - absdiff 4511.90 percdiff 111.4874 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 537046 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3457 erate 0.0605 score 3247.85 - absdiff 3055.10 percdiff 63.9758 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 688040 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 2890 erate 0.0570 score 2725.27 - absdiff 3577.68 percdiff 79.2555 tig 244 read 559084 pos 33717-41673 NOT confused by 3' edge to read 701935 - best edge read 559083 len 6765 erate 0.0683 score 6302.95 - alt edge len 3466 erate 0.0711 score 3219.57 - absdiff 3083.38 percdiff 64.7598 tig 244 read 559083 pos 34744-44240 NOT confused by 5' edge to read 31648 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 3314 erate 0.0721 score 3075.06 - absdiff 2647.02 percdiff 60.1791 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 112243 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5952 erate 0.0495 score 5657.38 - absdiff 64.71 percdiff 1.1372 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 127603 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 4663 erate 0.0613 score 4377.16 - absdiff 1344.92 percdiff 26.6342 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 175693 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5915 erate 0.0666 score 5521.06 - absdiff 201.02 percdiff 3.5759 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 338205 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5932 erate 0.0604 score 5573.71 - absdiff 148.37 percdiff 2.6271 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 448733 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5951 erate 0.0550 score 5623.69 - absdiff 98.39 percdiff 1.7343 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 498322 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5950 erate 0.0454 score 5679.87 - absdiff 42.21 percdiff 0.7404 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 498323 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 6033 erate 0.0548 score 5702.39 - absdiff 19.69 percdiff 0.3447 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 498473 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5970 erate 0.0524 score 5657.17 - absdiff 64.91 percdiff 1.1408 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 509401 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 4405 erate 0.0602 score 4139.82 - absdiff 1582.26 percdiff 32.0884 tig 244 read 559083 pos 34744-44240 IS confused by 5' edge to read 701935 - best edge read 611765 len 6099 erate 0.0618 score 5722.08 - alt edge len 5959 erate 0.0614 score 5593.12 - absdiff 128.96 percdiff 2.2795 tig 244 read 611765 pos 37910-44702 NOT confused by 5' edge to read 13083 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 2396 erate 0.0701 score 2228.04 - absdiff 3436.81 percdiff 87.0862 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 40951 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4202 erate 0.0317 score 4068.80 - absdiff 1596.05 percdiff 32.7946 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 40952 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4181 erate 0.0376 score 4023.79 - absdiff 1641.06 percdiff 33.8759 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 40953 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4163 erate 0.0345 score 4019.38 - absdiff 1645.48 percdiff 33.9826 tig 244 read 611765 pos 37910-44702 IS confused by 3' edge to read 112243 - best edge read 340261 len 6401 erate 0.0715 score 5943.33 - alt edge len 6387 erate 0.0698 score 5941.19 - absdiff 2.14 percdiff 0.0360 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 293759 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4147 erate 0.0512 score 3934.67 - absdiff 1730.18 percdiff 36.0472 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 446890 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4247 erate 0.0287 score 4125.11 - absdiff 1539.74 percdiff 31.4555 tig 244 read 611765 pos 37910-44702 NOT confused by 5' edge to read 488985 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 3056 erate 0.0626 score 2864.69 - absdiff 2800.16 percdiff 65.6578 tig 244 read 611765 pos 37910-44702 NOT confused by 5' edge to read 517830 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 3085 erate 0.0482 score 2936.30 - absdiff 2728.55 percdiff 63.4461 tig 244 read 611765 pos 37910-44702 IS confused by 3' edge to read 537046 - best edge read 340261 len 6401 erate 0.0715 score 5943.33 - alt edge len 6384 erate 0.0716 score 5926.91 - absdiff 16.42 percdiff 0.2767 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 581053 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 5841 erate 0.0243 score 5699.06 - absdiff 34.21 percdiff 0.6021 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 640013 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 4434 erate 0.0504 score 4210.53 - absdiff 1454.33 percdiff 29.4536 tig 244 read 611765 pos 37910-44702 IS confused by 5' edge to read 709264 - best edge read 559083 len 6038 erate 0.0618 score 5664.85 - alt edge len 3897 erate 0.0468 score 3714.62 - absdiff 1950.23 percdiff 41.5851 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 13083 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2233 erate 0.0424 score 2138.32 - absdiff 3694.52 percdiff 92.6971 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 40951 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4035 erate 0.0187 score 3959.55 - absdiff 1873.29 percdiff 38.2602 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 40952 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4014 erate 0.0248 score 3914.45 - absdiff 1918.38 percdiff 39.3624 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 40953 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3996 erate 0.0202 score 3915.28 - absdiff 1917.56 percdiff 39.3421 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 57852 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1577 erate 0.0341 score 1523.22 - absdiff 4309.61 percdiff 117.1717 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 65341 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4634 erate 0.0324 score 4483.86 - absdiff 1348.98 percdiff 26.1514 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 69310 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3998 erate 0.0472 score 3809.29 - absdiff 2023.54 percdiff 41.9729 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 132544 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2278 erate 0.0396 score 2187.79 - absdiff 3645.05 percdiff 90.8918 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 159138 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2948 erate 0.0722 score 2735.15 - absdiff 3097.68 percdiff 72.3083 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 169948 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3146 erate 0.0282 score 3057.28 - absdiff 2775.55 percdiff 62.4413 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 195437 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1344 erate 0.0383 score 1292.52 - absdiff 4540.31 percdiff 127.4409 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 230236 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3325 erate 0.0647 score 3109.87 - absdiff 2722.96 percdiff 60.8980 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 235367 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1494 erate 0.0607 score 1403.31 - absdiff 4429.52 percdiff 122.4276 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 280493 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4384 erate 0.0172 score 4308.60 - absdiff 1524.24 percdiff 30.0597 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 293759 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3980 erate 0.0350 score 3840.70 - absdiff 1992.14 percdiff 41.1874 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 330954 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2611 erate 0.0378 score 2512.30 - absdiff 3320.53 percdiff 79.5800 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 332301 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 816 erate 0.0395 score 783.77 - absdiff 5049.07 percdiff 152.6181 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 336567 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3069 erate 0.0705 score 2852.64 - absdiff 2980.20 percdiff 68.6250 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 358755 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 628 erate 0.0701 score 583.98 - absdiff 5248.86 percdiff 163.5971 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 442834 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3047 erate 0.0593 score 2866.31 - absdiff 2966.52 percdiff 68.2026 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 446890 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4080 erate 0.0140 score 4022.88 - absdiff 1809.96 percdiff 36.7291 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 454805 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 913 erate 0.0715 score 847.72 - absdiff 4985.12 percdiff 149.2425 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 454809 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 919 erate 0.0491 score 873.88 - absdiff 4958.96 percdiff 147.8805 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 475899 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3739 erate 0.0434 score 3576.73 - absdiff 2256.11 percdiff 47.9535 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 478088 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 922 erate 0.0664 score 860.78 - absdiff 4972.06 percdiff 148.5612 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 478090 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 907 erate 0.0598 score 852.76 - absdiff 4980.08 percdiff 148.9792 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 488985 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2891 erate 0.0377 score 2782.01 - absdiff 3050.83 percdiff 70.8272 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 515241 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1044 erate 0.0449 score 997.12 - absdiff 4835.71 percdiff 141.6029 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 515242 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1054 erate 0.0520 score 999.19 - absdiff 4833.64 percdiff 141.4995 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 517830 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2920 erate 0.0269 score 2841.45 - absdiff 2991.38 percdiff 68.9713 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 531565 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 628 erate 0.0599 score 590.38 - absdiff 5242.45 percdiff 163.2345 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 581053 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 5671 erate 0.0150 score 5585.93 - absdiff 246.90 percdiff 4.3245 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 605986 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 5678 erate 0.0164 score 5584.88 - absdiff 247.96 percdiff 4.3434 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 607786 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1903 erate 0.0337 score 1838.87 - absdiff 3993.97 percdiff 104.1220 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 633924 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2594 erate 0.0493 score 2466.12 - absdiff 3366.72 percdiff 81.1360 tig 244 read 340261 pos 38078-45714 IS confused by 3' edge to read 640013 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 4266 erate 0.0363 score 4111.14 - absdiff 1721.69 percdiff 34.6278 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 702991 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2318 erate 0.0412 score 2222.50 - absdiff 3610.34 percdiff 89.6384 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 709264 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 3730 erate 0.0307 score 3615.49 - absdiff 2217.35 percdiff 46.9363 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 711312 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2006 erate 0.0636 score 1878.42 - absdiff 3954.42 percdiff 102.5623 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 711313 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2007 erate 0.0436 score 1919.49 - absdiff 3913.34 percdiff 100.9591 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 711314 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 1506 erate 0.0664 score 1406.00 - absdiff 4426.84 percdiff 122.3079 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 720778 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2912 erate 0.0349 score 2810.37 - absdiff 3022.47 percdiff 69.9385 tig 244 read 340261 pos 38078-45714 NOT confused by 3' edge to read 720780 - best edge read 611765 len 6282 erate 0.0715 score 5832.84 - alt edge len 2923 erate 0.0349 score 2820.99 - absdiff 3011.85 percdiff 69.6074 discard region 29103:31291 - no confusion in best edges saved region 32298:44832 - 32 best edges are potentially confused break tig 244 into up to 3 pieces: 0 31798 unique (length 31798) 31798 45332 repeat (length 13534) 45332 45729 unique (length 397) Creating Unitig 113180 Creating Unitig 113181 Creating Unitig 113182 For tig 244 unique region 0 31798 - 0/ 36 reads repeat/unique - unitig 113180 created. For tig 244 repeat region 31798 45332 - 293/ 0 reads repeat/unique - unitig 113181 created. For tig 244 unique region 45332 45729 - 0/ 5 reads repeat/unique - unitig 113182 created. Annotating repeats in reads for tig 245/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 30455:31299 - closest read 646353 ( +0) 30455:36999 ( +5700) (contained) saved region 30455:31299 - closest 5' read 646353 ( +0) 30455:36999 ( +5700) saved region 30455:31299 - closest 3' read 646353 ( +0) 30455:36999 ( +5700) search for confused edges: discard region 30455:31299 - no confusion in best edges Annotating repeats in reads for tig 246/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1727:9794 - contained in read 376898 130- 9794 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 247/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 17446:21494 - contained in read 440481 11224- 24957 thickest edges to the repeat regions: saved region 9748:15965 - closest 5' read 436954 ( +0) 9748:15453 ( -512) saved region 9748:15965 - closest 3' read 254925 ( -6) 9754:17165 ( +1200) search for confused edges: tig 247 read 254925 pos 9754-17165 IS confused by 5' edge to read 530392 - best edge read 708643 len 2862 erate 0.0248 score 2791.02 - alt edge len 909 erate 0.0242 score 887.00 - absdiff 1904.02 percdiff 103.5349 tig 247 read 254925 pos 9754-17165 IS confused by 5' edge to read 530396 - best edge read 708643 len 2862 erate 0.0248 score 2791.02 - alt edge len 1011 erate 0.0277 score 983.00 - absdiff 1808.03 percdiff 95.8144 tig 247 read 254925 pos 9754-17165 IS confused by 5' edge to read 639051 - best edge read 708643 len 2862 erate 0.0248 score 2791.02 - alt edge len 2609 erate 0.0165 score 2565.95 - absdiff 225.07 percdiff 8.4029 saved region 9748:15965 - 3 best edges are potentially confused break tig 247 into up to 3 pieces: 0 9248 unique (length 9248) 9248 16465 repeat (length 7217) 16465 37654 unique (length 21189) Creating Unitig 113183 Creating Unitig 113184 Creating Unitig 113185 For tig 247 unique region 0 9248 - 0/ 17 reads repeat/unique - unitig 113183 created. For tig 247 repeat region 9248 16465 - 23/ 0 reads repeat/unique - unitig 113184 created. For tig 247 unique region 16465 37654 - 0/ 45 reads repeat/unique - unitig 113185 created. Annotating repeats in reads for tig 252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 253/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 21207:22352 - contained in read 235132 15959- 22931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 256/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 24535:25679 - contained in read 131356 20097- 25679 thickest edges to the repeat regions: saved region 15821:18768 - closest 5' read 328770 ( +3251) 12570:18521 ( -247) saved region 15821:18768 - closest 3' read 546592 ( -85) 15906:18768 ( +0) search for confused edges: discard region 15821:18768 - no confusion in best edges Annotating repeats in reads for tig 260/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 3445:7667 - contained in read 70391 1025- 7667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 266/113047. Annotated with 135 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4173:11370 - closest 5' read 548717 ( +3495) 678:11340 ( -30) saved region 4173:11370 - closest 3' read 662024 ( -1788) 5961:11370 ( +0) search for confused edges: discard region 4173:11370 - no confusion in best edges Annotating repeats in reads for tig 270/113047. Annotated with 150 overlaps. Scan reads to discard spanned repeats. discard region 39309:40437 - contained in read 625712 33061- 42021 thickest edges to the repeat regions: saved region 4510:13062 - closest read 261126 ( +1915) 2595:13062 ( +0) (contained) saved region 4510:13062 - closest 5' read 261126 ( +1915) 2595:13062 ( +0) saved region 4510:13062 - closest 3' read 261126 ( +1915) 2595:13062 ( +0) saved region 13202:27538 - closest 5' read 221258 ( +955) 12247:20326 ( -7212) saved region 13202:27538 - closest 3' read 396629 ( -7268) 20470:29641 ( +2103) saved region 28232:32997 - closest 5' read 329827 ( +3157) 25075:32342 ( -655) saved region 28232:32997 - closest 3' read 297879 ( -1) 28233:33498 ( +501) search for confused edges: tig 270 read 221258 pos 12247-20326 NOT confused by 3' edge to read 19234 - best edge read 146007 len 6814 erate 0.0231 score 6656.60 - alt edge len 2324 erate 0.0344 score 2244.05 - absdiff 4412.54 percdiff 99.1510 tig 270 read 221258 pos 12247-20326 IS confused by 3' edge to read 77734 - best edge read 146007 len 6814 erate 0.0231 score 6656.60 - alt edge len 5071 erate 0.0479 score 4828.10 - absdiff 1828.50 percdiff 31.8423 tig 270 read 221258 pos 12247-20326 NOT confused by 3' edge to read 625856 - best edge read 146007 len 6814 erate 0.0231 score 6656.60 - alt edge len 3389 erate 0.0224 score 3313.09 - absdiff 3343.51 percdiff 67.0736 tig 270 read 146005 pos 13455-20698 NOT confused by 5' edge to read 118311 - best edge read 146007 len 7128 erate 0.0235 score 6960.49 - alt edge len 561 erate 0.0591 score 527.84 - absdiff 6432.65 percdiff 171.8044 tig 270 read 146005 pos 13455-20698 NOT confused by 5' edge to read 118312 - best edge read 146007 len 7128 erate 0.0235 score 6960.49 - alt edge len 538 erate 0.0561 score 507.82 - absdiff 6452.67 percdiff 172.8014 tig 270 read 146007 pos 13472-20608 NOT confused by 5' edge to read 118311 - best edge read 221258 len 6753 erate 0.0231 score 6597.01 - alt edge len 562 erate 0.0623 score 526.99 - absdiff 6070.02 percdiff 170.4106 tig 270 read 146007 pos 13472-20608 NOT confused by 5' edge to read 118312 - best edge read 221258 len 6753 erate 0.0231 score 6597.01 - alt edge len 541 erate 0.0555 score 510.97 - absdiff 6086.03 percdiff 171.2450 tig 270 read 146007 pos 13472-20608 NOT confused by 3' edge to read 625856 - best edge read 146005 len 7058 erate 0.0235 score 6892.14 - alt edge len 3662 erate 0.0702 score 3404.93 - absdiff 3487.21 percdiff 67.7321 tig 270 read 151544 pos 17319-27074 NOT confused by 5' edge to read 30453 - best edge read 396629 len 6446 erate 0.0390 score 6194.61 - alt edge len 3486 erate 0.0648 score 3260.11 - absdiff 2934.50 percdiff 62.0748 tig 270 read 151544 pos 17319-27074 IS confused by 3' edge to read 668068 - best edge read 146005 len 3289 erate 0.0632 score 3081.14 - alt edge len 2073 erate 0.0516 score 1966.03 - absdiff 1115.10 percdiff 44.1872 tig 270 read 396629 pos 20470-29641 NOT confused by 5' edge to read 230504 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 2731 erate 0.0511 score 2591.45 - absdiff 3796.32 percdiff 84.5580 tig 270 read 396629 pos 20470-29641 NOT confused by 5' edge to read 339921 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 2626 erate 0.0406 score 2519.38 - absdiff 3868.38 percdiff 86.8602 tig 270 read 396629 pos 20470-29641 IS confused by 5' edge to read 407178 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 4640 erate 0.0373 score 4466.93 - absdiff 1920.84 percdiff 35.3919 tig 270 read 396629 pos 20470-29641 NOT confused by 5' edge to read 567925 - best edge read 151544 len 6647 erate 0.0390 score 6387.77 - alt edge len 1745 erate 0.0529 score 1652.69 - absdiff 4735.08 percdiff 117.7813 tig 270 read 81572 pos 21060-32211 NOT confused by 5' edge to read 236735 - best edge read 297879 len 3909 erate 0.0310 score 3787.82 - alt edge len 1701 erate 0.0276 score 1654.05 - absdiff 2133.77 percdiff 78.4204 tig 270 read 81572 pos 21060-32211 NOT confused by 5' edge to read 554849 - best edge read 297879 len 3909 erate 0.0310 score 3787.82 - alt edge len 688 erate 0.0195 score 674.58 - absdiff 3113.24 percdiff 139.5318 tig 270 read 81572 pos 21060-32211 NOT confused by 5' edge to read 554851 - best edge read 297879 len 3909 erate 0.0310 score 3787.82 - alt edge len 687 erate 0.0180 score 674.63 - absdiff 3113.19 percdiff 139.5280 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 110878 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 3739 erate 0.0452 score 3570.00 - absdiff 227.12 percdiff 6.1658 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 145128 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 2993 erate 0.0234 score 2922.96 - absdiff 874.16 percdiff 26.0162 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 261831 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1145 erate 0.0387 score 1100.69 - absdiff 2696.43 percdiff 110.1077 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 261832 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1123 erate 0.0461 score 1071.23 - absdiff 2725.89 percdiff 111.9841 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 318674 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1419 erate 0.0369 score 1366.64 - absdiff 2430.48 percdiff 94.1361 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 326332 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 919 erate 0.0532 score 870.11 - absdiff 2927.01 percdiff 125.4282 tig 270 read 297879 pos 28233-33498 NOT confused by 3' edge to read 442416 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 1237 erate 0.0531 score 1171.32 - absdiff 2625.80 percdiff 105.6994 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 632225 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 3631 erate 0.0237 score 3544.95 - absdiff 252.17 percdiff 6.8693 tig 270 read 297879 pos 28233-33498 IS confused by 3' edge to read 632226 - best edge read 81572 len 3919 erate 0.0311 score 3797.12 - alt edge len 3638 erate 0.0231 score 3553.96 - absdiff 243.16 percdiff 6.6155 discard region 4510:13062 - no confusion in best edges saved region 13202:27538 - 3 best edges are potentially confused saved region 28232:32997 - 4 best edges are potentially confused merge extended regions 12702:28038 and 27732:33497 break tig 270 into up to 3 pieces: 0 12702 unique (length 12702) 12702 33497 repeat (length 20795) 33497 49653 unique (length 16156) Creating Unitig 113186 Creating Unitig 113187 Creating Unitig 113188 For tig 270 unique region 0 12702 - 0/ 33 reads repeat/unique - unitig 113186 created. For tig 270 repeat region 12702 33497 - 36/ 0 reads repeat/unique - unitig 113187 created. For tig 270 unique region 33497 49653 - 0/ 25 reads repeat/unique - unitig 113188 created. Annotating repeats in reads for tig 278/113047. Annotated with 1026 overlaps. Scan reads to discard spanned repeats. discard region 0:699 - contained in read 190393 0- 7617 discard region 25151:25719 - contained in read 446299 12446- 29028 discard region 28128:32297 - contained in read 642219 21414- 32947 discard region 34498:39843 - contained in read 299674 31893- 41808 thickest edges to the repeat regions: saved region 6989:19475 - closest 5' read 694121 ( +6724) 265:8189 (-11286) saved region 6989:19475 - closest 3' read 446299 ( -5457) 12446:29028 ( +9553) search for confused edges: tig 278 read 622279 pos 7511-14032 IS confused by 3' edge to read 48676 - best edge read 694120 len 672 erate 0.0625 score 630.00 - alt edge len 665 erate 0.0586 score 626.03 - absdiff 3.97 percdiff 0.6320 tig 278 read 446299 pos 12446-29028 IS confused by 5' edge to read 161542 - best edge read 622279 len 1575 erate 0.0598 score 1480.82 - alt edge len 1667 erate 0.0673 score 1554.81 - absdiff 74.00 percdiff 4.8752 saved region 6989:19475 - 2 best edges are potentially confused break tig 278 into up to 3 pieces: 0 6489 unique (length 6489) 6489 19975 repeat (length 13486) 19975 41827 unique (length 21852) Creating Unitig 113189 Creating Unitig 113190 Creating Unitig 113191 For tig 278 unique region 0 6489 - 0/ 6 reads repeat/unique - unitig 113189 created. For tig 278 repeat region 6489 19975 - 17/ 0 reads repeat/unique - unitig 113190 created. For tig 278 unique region 19975 41827 - 0/ 34 reads repeat/unique - unitig 113191 created. Annotating repeats in reads for tig 280/113047. Annotated with 1374 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10175:10897 - closest read 680566 ( +9638) 537:10897 ( +0) (contained) saved region 10175:10897 - closest 5' read 680566 ( +9638) 537:10897 ( +0) saved region 10175:10897 - closest 3' read 680566 ( +9638) 537:10897 ( +0) saved region 25345:26502 - closest read 417331 ( +5862) 19483:26502 ( +0) (contained) saved region 25345:26502 - closest 5' read 417331 ( +5862) 19483:26502 ( +0) saved region 25345:26502 - closest 3' read 417331 ( +5862) 19483:26502 ( +0) saved region 30555:38861 - closest 5' read 22692 ( +4630) 25925:31951 ( -6910) saved region 30555:38861 - closest 3' read 114216 ( -2587) 33142:38861 ( +0) search for confused edges: tig 280 read 45991 pos 10217-17837 IS confused by 5' edge to read 147947 - best edge read 680566 len 677 erate 0.0640 score 633.67 - alt edge len 657 erate 0.0511 score 623.43 - absdiff 10.24 percdiff 1.6299 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 36300 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1033 erate 0.0538 score 977.42 - absdiff 3014.12 percdiff 121.3177 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 36301 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1021 erate 0.0613 score 958.41 - absdiff 3033.13 percdiff 122.5519 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 52536 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1346 erate 0.0371 score 1296.06 - absdiff 2695.48 percdiff 101.9547 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 52537 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1333 erate 0.0345 score 1287.01 - absdiff 2704.53 percdiff 102.4725 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 94597 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1383 erate 0.0362 score 1332.94 - absdiff 2658.61 percdiff 99.8637 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 166756 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2064 erate 0.0361 score 1989.49 - absdiff 2002.06 percdiff 66.9468 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 166758 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2063 erate 0.0403 score 1979.86 - absdiff 2011.69 percdiff 67.3773 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 201858 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2864 erate 0.0489 score 2723.95 - absdiff 1267.60 percdiff 37.7514 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 236227 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 540 erate 0.0504 score 512.78 - absdiff 3478.76 percdiff 154.4630 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 238313 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2278 erate 0.0303 score 2208.98 - absdiff 1782.57 percdiff 57.4974 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 247072 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2069 erate 0.0582 score 1948.58 - absdiff 2042.96 percdiff 68.7851 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 250064 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2590 erate 0.0641 score 2423.98 - absdiff 1567.57 percdiff 48.8679 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 259113 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2825 erate 0.0356 score 2724.43 - absdiff 1267.12 percdiff 37.7344 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 266065 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1054 erate 0.0636 score 986.97 - absdiff 3004.58 percdiff 120.7020 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 336357 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2354 erate 0.0416 score 2256.07 - absdiff 1735.47 percdiff 55.5563 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 554187 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1242 erate 0.0392 score 1193.31 - absdiff 2798.23 percdiff 107.9386 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 599347 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2700 erate 0.0426 score 2584.98 - absdiff 1406.57 percdiff 42.7754 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 599349 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2699 erate 0.0453 score 2576.74 - absdiff 1414.81 percdiff 43.0801 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 608472 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2246 erate 0.0205 score 2199.96 - absdiff 1791.59 percdiff 57.8725 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 608476 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2242 erate 0.0196 score 2198.06 - absdiff 1793.49 percdiff 57.9517 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 609430 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1424 erate 0.0465 score 1357.78 - absdiff 2633.76 percdiff 98.4707 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 609431 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1417 erate 0.0479 score 1349.13 - absdiff 2642.42 percdiff 98.9546 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 609433 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1420 erate 0.0413 score 1361.35 - absdiff 2630.19 percdiff 98.2717 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 611814 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2307 erate 0.0365 score 2222.79 - absdiff 1768.75 percdiff 56.9248 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 628083 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2042 erate 0.0181 score 2005.04 - absdiff 1986.51 percdiff 66.2546 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 628084 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2032 erate 0.0167 score 1998.07 - absdiff 1993.48 percdiff 66.5646 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 637543 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 1678 erate 0.0459 score 1600.98 - absdiff 2390.57 percdiff 85.4915 tig 280 read 628000 pos 31165-37857 IS confused by 5' edge to read 643871 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 2730 erate 0.0361 score 2631.45 - absdiff 1360.10 percdiff 41.0720 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 657250 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 692 erate 0.0505 score 657.05 - absdiff 3334.49 percdiff 143.4622 tig 280 read 628000 pos 31165-37857 NOT confused by 5' edge to read 657252 - best edge read 114215 len 4078 erate 0.0212 score 3991.55 - alt edge len 723 erate 0.0636 score 677.02 - absdiff 3314.53 percdiff 141.9935 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 166756 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3644 erate 0.0680 score 3396.21 - absdiff 2017.71 percdiff 45.8043 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 201858 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4418 erate 0.0560 score 4170.59 - absdiff 1243.32 percdiff 25.9444 tig 280 read 114215 pos 33024-38733 NOT confused by 3' edge to read 212668 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3012 erate 0.0560 score 2843.33 - absdiff 2570.59 percdiff 62.2626 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 238313 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3860 erate 0.0345 score 3726.83 - absdiff 1687.09 percdiff 36.9135 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 250064 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4173 erate 0.0578 score 3931.80 - absdiff 1482.11 percdiff 31.7175 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 259113 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4404 erate 0.0393 score 4230.92 - absdiff 1182.99 percdiff 24.5311 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 336357 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3935 erate 0.0534 score 3724.87 - absdiff 1689.04 percdiff 36.9643 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 628083 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3622 erate 0.0309 score 3510.08 - absdiff 1903.83 percdiff 42.6678 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 628084 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3612 erate 0.0277 score 3511.95 - absdiff 1901.97 percdiff 42.6170 tig 280 read 114215 pos 33024-38733 NOT confused by 3' edge to read 637543 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 3256 erate 0.0424 score 3117.95 - absdiff 2295.97 percdiff 53.8211 tig 280 read 114215 pos 33024-38733 IS confused by 3' edge to read 643871 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 4313 erate 0.0455 score 4116.76 - absdiff 1297.16 percdiff 27.2207 tig 280 read 114215 pos 33024-38733 NOT confused by 3' edge to read 671333 - best edge read 114216 len 5590 erate 0.0315 score 5413.91 - alt edge len 2140 erate 0.0587 score 2014.38 - absdiff 3399.53 percdiff 91.5293 saved region 10175:10897 - 1 best edges are potentially confused discard region 25345:26502 - no confusion in best edges saved region 30555:38861 - 25 best edges are potentially confused break tig 280 into up to 4 pieces: 0 9675 unique (length 9675) 9675 11397 repeat (length 1722) 11397 30055 unique (length 18658) 30055 38861 repeat (length 8806) Creating Unitig 113192 Creating Unitig 113193 Creating Unitig 113194 For tig 280 unique region 0 9675 - 0/ 6 reads repeat/unique - unitig 113192 created. For tig 280 repeat region 9675 11397 - 0/ 0 repeat/unique reads - no new unitig created. For tig 280 unique region 11397 30055 - 0/ 14 reads repeat/unique - unitig 113193 created. For tig 280 repeat region 30055 38861 - 27/ 0 reads repeat/unique - unitig 113194 created. Annotating repeats in reads for tig 281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 282/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 20604:22145 - contained in read 535329 9799- 23987 discard region 30241:32955 - contained in read 182698 26390- 38037 discard region 39152:40466 - contained in read 534139 36999- 43920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 284/113047. Annotated with 1252 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19547:33053 - closest 5' read 268102 ( +0) 19547:28897 ( -4156) saved region 19547:33053 - closest 3' read 350506 ( -5445) 24992:33053 ( +0) search for confused edges: tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 10484 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1777 erate 0.0593 score 1671.62 - absdiff 1529.41 percdiff 62.7751 tig 284 read 530119 pos 18582-25836 NOT confused by 5' edge to read 132228 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 597 erate 0.0642 score 558.67 - absdiff 2642.36 percdiff 140.5620 tig 284 read 530119 pos 18582-25836 NOT confused by 5' edge to read 277944 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1104 erate 0.0590 score 1038.86 - absdiff 2162.17 percdiff 101.9915 tig 284 read 530119 pos 18582-25836 NOT confused by 5' edge to read 277945 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1103 erate 0.0664 score 1029.76 - absdiff 2171.27 percdiff 102.6413 tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 671152 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 1414 erate 0.0610 score 1327.75 - absdiff 1873.28 percdiff 82.7281 tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 698389 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 2035 erate 0.0586 score 1915.75 - absdiff 1285.28 percdiff 50.2379 tig 284 read 530119 pos 18582-25836 IS confused by 5' edge to read 698390 - best edge read 287948 len 3392 erate 0.0563 score 3201.03 - alt edge len 2044 erate 0.0510 score 1939.76 - absdiff 1261.27 percdiff 49.0693 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 9995 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2097 erate 0.0410 score 2011.02 - absdiff 3242.16 percdiff 89.2639 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 10484 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 984 erate 0.0288 score 955.66 - absdiff 4297.52 percdiff 138.4322 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 27942 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2421 erate 0.0317 score 2344.25 - absdiff 2908.92 percdiff 76.5765 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 82739 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 850 erate 0.0379 score 817.78 - absdiff 4435.39 percdiff 146.1183 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 268941 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2345 erate 0.0386 score 2254.48 - absdiff 2998.70 percdiff 79.8836 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 323974 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2316 erate 0.0387 score 2226.37 - absdiff 3026.81 percdiff 80.9356 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 323976 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2375 erate 0.0387 score 2283.09 - absdiff 2970.09 percdiff 78.8213 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 353956 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2285 erate 0.0388 score 2196.34 - absdiff 3056.84 percdiff 82.0680 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 353957 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1750 erate 0.0404 score 1679.30 - absdiff 3573.88 percdiff 103.1054 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 429277 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2583 erate 0.0366 score 2488.46 - absdiff 2764.72 percdiff 71.4246 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 453691 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1825 erate 0.0434 score 1745.80 - absdiff 3507.38 percdiff 100.2257 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 502457 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2201 erate 0.0352 score 2123.52 - absdiff 3129.65 percdiff 84.8524 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 544929 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 2333 erate 0.0488 score 2219.15 - absdiff 3034.03 percdiff 81.2071 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 587506 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 605 erate 0.0599 score 568.76 - absdiff 4684.42 percdiff 160.9230 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 587509 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 615 erate 0.0487 score 585.05 - absdiff 4668.13 percdiff 159.9160 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 596060 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1225 erate 0.0247 score 1194.74 - absdiff 4058.44 percdiff 125.8836 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 638060 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1016 erate 0.0399 score 975.46 - absdiff 4277.72 percdiff 137.3564 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 671152 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 622 erate 0.0507 score 590.46 - absdiff 4662.71 percdiff 159.5824 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 698389 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1241 erate 0.0333 score 1199.67 - absdiff 4053.50 percdiff 125.6345 tig 284 read 287948 pos 20999-30470 NOT confused by 3' edge to read 698390 - best edge read 356208 len 5419 erate 0.0306 score 5253.18 - alt edge len 1250 erate 0.0225 score 1221.88 - absdiff 4031.30 percdiff 124.5180 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 60396 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 3098 erate 0.0694 score 2883.00 - absdiff 2348.85 percdiff 57.8902 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 89750 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1573 erate 0.0513 score 1492.31 - absdiff 3739.55 percdiff 111.2272 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 98320 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1185 erate 0.0300 score 1149.45 - absdiff 4960.19 percdiff 136.6615 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 98325 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1184 erate 0.0416 score 1134.75 - absdiff 4974.90 percdiff 137.3449 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 196030 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2632 erate 0.0490 score 2503.03 - absdiff 2728.82 percdiff 70.5588 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 239100 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 550 erate 0.0651 score 514.19 - absdiff 5595.45 percdiff 168.9488 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 245018 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1770 erate 0.0664 score 1652.47 - absdiff 3579.38 percdiff 103.9864 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 277944 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1587 erate 0.0311 score 1537.64 - absdiff 4572.00 percdiff 119.5718 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 277945 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1586 erate 0.0335 score 1532.87 - absdiff 4576.78 percdiff 119.7715 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 371033 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 3036 erate 0.0442 score 2901.81 - absdiff 2330.04 percdiff 57.2938 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 371035 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 3031 erate 0.0438 score 2898.24 - absdiff 2333.61 percdiff 57.4067 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 461692 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1817 erate 0.0529 score 1720.88 - absdiff 3510.97 percdiff 100.9954 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 474885 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 980 erate 0.0554 score 925.71 - absdiff 4306.14 percdiff 139.8653 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 479938 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2853 erate 0.0428 score 2730.89 - absdiff 2500.96 percdiff 62.8165 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 545822 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1957 erate 0.0506 score 1857.98 - absdiff 3373.88 percdiff 95.1751 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 545826 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 1947 erate 0.0484 score 1852.77 - absdiff 3379.09 percdiff 95.3922 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 587506 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1881 erate 0.0495 score 1787.89 - absdiff 4321.75 percdiff 109.4456 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 587509 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1890 erate 0.0449 score 1805.14 - absdiff 4304.51 percdiff 108.7713 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 652603 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2198 erate 0.0628 score 2059.97 - absdiff 3171.89 percdiff 86.9985 tig 284 read 356208 pos 22804-29672 NOT confused by 5' edge to read 671152 - best edge read 350507 len 6221 erate 0.0179 score 6109.64 - alt edge len 1898 erate 0.0459 score 1810.88 - absdiff 4298.76 percdiff 108.5474 tig 284 read 356208 pos 22804-29672 NOT confused by 3' edge to read 714801 - best edge read 287948 len 5397 erate 0.0306 score 5231.85 - alt edge len 2655 erate 0.0633 score 2486.94 - absdiff 2744.91 percdiff 71.1229 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 9995 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1806 erate 0.0438 score 1726.90 - absdiff 1029.97 percdiff 45.9421 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 10484 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 706 erate 0.0313 score 683.90 - absdiff 2072.96 percdiff 120.4942 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 27942 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2127 erate 0.0315 score 2060.00 - absdiff 696.86 percdiff 28.9344 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 39091 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1017 erate 0.0639 score 952.01 - absdiff 6835.25 percdiff 156.4260 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 60396 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2645 erate 0.0616 score 2482.07 - absdiff 5305.20 percdiff 103.3212 tig 284 read 350509 pos 23475-31590 NOT confused by 3' edge to read 82739 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 572 erate 0.0402 score 549.01 - absdiff 2207.86 percdiff 133.5720 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 89750 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1091 erate 0.0446 score 1042.34 - absdiff 6744.92 percdiff 152.7797 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 119517 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2288 erate 0.0367 score 2204.03 - absdiff 552.83 percdiff 22.2877 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 196030 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2152 erate 0.0417 score 2062.26 - absdiff 5725.00 percdiff 116.2493 tig 284 read 350509 pos 23475-31590 NOT confused by 3' edge to read 220169 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 533 erate 0.0592 score 501.45 - absdiff 2255.42 percdiff 138.4409 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 245018 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1289 erate 0.0551 score 1217.98 - absdiff 6569.29 percdiff 145.8992 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 268941 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2051 erate 0.0397 score 1969.58 - absdiff 787.29 percdiff 33.3142 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 323974 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2023 erate 0.0420 score 1938.03 - absdiff 818.83 percdiff 34.8817 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 323976 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2081 erate 0.0380 score 2001.92 - absdiff 754.94 percdiff 31.7283 tig 284 read 350509 pos 23475-31590 NOT confused by 3' edge to read 342903 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 544 erate 0.0733 score 504.12 - absdiff 2252.74 percdiff 138.1630 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 353956 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1992 erate 0.0390 score 1914.31 - absdiff 842.55 percdiff 36.0745 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 353957 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1463 erate 0.0458 score 1395.99 - absdiff 1360.87 percdiff 65.5389 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 371033 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2553 erate 0.0292 score 2478.45 - absdiff 5308.81 percdiff 103.4280 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 371035 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2548 erate 0.0302 score 2471.05 - absdiff 5316.21 percdiff 103.6469 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 394710 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1737 erate 0.0564 score 1639.03 - absdiff 6148.23 percdiff 130.4485 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 429277 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2289 erate 0.0378 score 2202.48 - absdiff 554.39 percdiff 22.3573 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 453691 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1536 erate 0.0485 score 1461.50 - absdiff 1295.36 percdiff 61.4152 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 461692 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1335 erate 0.0427 score 1278.00 - absdiff 6509.27 percdiff 143.6091 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 479938 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2372 erate 0.0316 score 2297.04 - absdiff 5490.22 percdiff 108.8864 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 502457 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 1908 erate 0.0383 score 1834.92 - absdiff 921.94 percdiff 40.1561 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 544929 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2040 erate 0.0515 score 1934.94 - absdiff 821.92 percdiff 35.0366 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 545822 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1475 erate 0.0407 score 1414.97 - absdiff 6372.30 percdiff 138.4946 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 545826 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1465 erate 0.0348 score 1414.02 - absdiff 6373.25 percdiff 138.5295 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 582995 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 2289 erate 0.0625 score 2145.94 - absdiff 610.93 percdiff 24.9215 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 596060 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 947 erate 0.0222 score 925.98 - absdiff 1830.89 percdiff 99.4280 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 623107 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 809 erate 0.0530 score 766.12 - absdiff 7021.14 percdiff 164.1722 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 638060 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 738 erate 0.0407 score 707.96 - absdiff 2048.90 percdiff 118.2686 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 652603 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 1716 erate 0.0451 score 1638.61 - absdiff 6148.66 percdiff 130.4634 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 698389 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 963 erate 0.0343 score 929.97 - absdiff 1826.89 percdiff 99.1037 tig 284 read 350509 pos 23475-31590 IS confused by 3' edge to read 698390 - best edge read 132228 len 2816 erate 0.0210 score 2756.86 - alt edge len 971 erate 0.0227 score 948.96 - absdiff 1807.91 percdiff 97.5711 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 699255 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 532 erate 0.0733 score 493.00 - absdiff 7294.26 percdiff 176.1841 tig 284 read 350509 pos 23475-31590 NOT confused by 5' edge to read 714801 - best edge read 350508 len 7947 erate 0.0201 score 7787.27 - alt edge len 2175 erate 0.0533 score 2059.07 - absdiff 5728.19 percdiff 116.3517 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 9995 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1775 erate 0.0536 score 1679.86 - absdiff 6081.84 percdiff 128.8313 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 10484 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 672 erate 0.0492 score 638.94 - absdiff 7122.76 percdiff 169.5767 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 27942 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2095 erate 0.0430 score 2004.91 - absdiff 5756.79 percdiff 117.8870 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 39091 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1029 erate 0.0651 score 962.01 - absdiff 5118.17 percdiff 145.3572 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 60396 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2650 erate 0.0664 score 2474.04 - absdiff 3606.14 percdiff 84.3126 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 82739 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 538 erate 0.0633 score 503.94 - absdiff 7257.76 percdiff 175.6126 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 89750 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1102 erate 0.0439 score 1053.62 - absdiff 5026.56 percdiff 140.9223 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 119517 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2254 erate 0.0462 score 2149.87 - absdiff 5611.84 percdiff 113.2381 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 196030 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2158 erate 0.0474 score 2055.71 - absdiff 4024.47 percdiff 98.9313 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 245018 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1300 erate 0.0638 score 1217.06 - absdiff 4863.12 percdiff 133.2866 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 268941 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2021 erate 0.0515 score 1916.92 - absdiff 5844.78 percdiff 120.7772 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 323974 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1992 erate 0.0512 score 1890.01 - absdiff 5871.69 percdiff 121.6715 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 323976 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2051 erate 0.0468 score 1955.01 - absdiff 5806.69 percdiff 119.5196 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 342903 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 512 erate 0.0705 score 475.90 - absdiff 7285.80 percdiff 176.8912 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 353956 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1961 erate 0.0507 score 1861.58 - absdiff 5900.12 percdiff 122.6219 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 353957 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1431 erate 0.0571 score 1349.29 - absdiff 6412.41 percdiff 140.7621 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 371033 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2558 erate 0.0361 score 2465.66 - absdiff 3614.52 percdiff 84.5915 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 371035 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2553 erate 0.0328 score 2469.26 - absdiff 3610.92 percdiff 84.4715 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 394710 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1746 erate 0.0578 score 1645.08 - absdiff 4435.10 percdiff 114.8207 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 429277 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2255 erate 0.0479 score 2146.99 - absdiff 5614.72 percdiff 113.3292 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 453691 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1504 erate 0.0593 score 1414.81 - absdiff 6346.89 percdiff 138.3290 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 461692 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1346 erate 0.0481 score 1281.26 - absdiff 4798.92 percdiff 130.3801 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 479938 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2375 erate 0.0400 score 2280.00 - absdiff 3800.18 percdiff 90.9115 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 502457 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 1877 erate 0.0480 score 1786.90 - absdiff 5974.80 percdiff 125.1449 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 544929 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2009 erate 0.0623 score 1883.84 - absdiff 5877.86 percdiff 121.8773 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 545822 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1485 erate 0.0471 score 1415.06 - absdiff 4665.12 percdiff 124.4824 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 545826 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1475 erate 0.0407 score 1414.97 - absdiff 4665.21 percdiff 124.4862 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 582995 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 2255 erate 0.0692 score 2098.95 - absdiff 5662.75 percdiff 114.8554 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 596060 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 913 erate 0.0384 score 877.94 - absdiff 6883.76 percdiff 159.3529 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 623107 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 821 erate 0.0543 score 776.42 - absdiff 5303.76 percdiff 154.7053 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 652603 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 1725 erate 0.0499 score 1638.92 - absdiff 4441.26 percdiff 115.0719 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 698389 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 929 erate 0.0506 score 881.99 - absdiff 6879.71 percdiff 159.1845 tig 284 read 350507 pos 24220-32281 NOT confused by 3' edge to read 698390 - best edge read 350508 len 7908 erate 0.0185 score 7761.70 - alt edge len 937 erate 0.0395 score 899.99 - absdiff 6861.71 percdiff 158.4382 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 699255 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 548 erate 0.0712 score 508.98 - absdiff 5571.20 percdiff 169.1019 tig 284 read 350507 pos 24220-32281 NOT confused by 5' edge to read 714801 - best edge read 356208 len 6191 erate 0.0179 score 6080.18 - alt edge len 2181 erate 0.0601 score 2049.92 - absdiff 4030.26 percdiff 99.1441 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 9995 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1788 erate 0.0560 score 1687.87 - absdiff 6068.04 percdiff 128.5086 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 10484 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 690 erate 0.0420 score 661.02 - absdiff 7094.89 percdiff 168.5862 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 27942 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2113 erate 0.0436 score 2020.87 - absdiff 5735.04 percdiff 117.3195 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 39091 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1030 erate 0.0612 score 966.96 - absdiff 6800.63 percdiff 155.7178 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 60396 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2647 erate 0.0688 score 2464.89 - absdiff 5302.70 percdiff 103.6446 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 82739 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 556 erate 0.0594 score 522.97 - absdiff 7232.93 percdiff 174.7322 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 89750 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1103 erate 0.0439 score 1054.58 - absdiff 6713.01 percdiff 152.1851 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 119517 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2276 erate 0.0475 score 2167.89 - absdiff 5588.02 percdiff 112.6185 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 196030 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2153 erate 0.0479 score 2049.87 - absdiff 5717.72 percdiff 116.4806 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 245018 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1298 erate 0.0640 score 1214.93 - absdiff 6552.66 percdiff 145.8981 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 268941 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2037 erate 0.0492 score 1936.78 - absdiff 5819.13 percdiff 120.0726 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 323974 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2007 erate 0.0509 score 1904.84 - absdiff 5851.06 percdiff 121.1306 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 323976 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2067 erate 0.0484 score 1966.96 - absdiff 5788.95 percdiff 119.0791 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 353956 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1976 erate 0.0518 score 1873.64 - absdiff 5882.27 percdiff 122.1711 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 353957 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1445 erate 0.0584 score 1360.61 - absdiff 6395.30 percdiff 140.3013 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 371033 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2555 erate 0.0365 score 2461.74 - absdiff 5305.85 percdiff 103.7379 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 371035 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2550 erate 0.0360 score 2458.20 - absdiff 5309.39 percdiff 103.8431 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 394710 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1743 erate 0.0597 score 1638.94 - absdiff 6128.65 percdiff 130.3062 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 429277 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2277 erate 0.0480 score 2167.70 - absdiff 5588.20 percdiff 112.6244 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 461692 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1343 erate 0.0444 score 1283.37 - absdiff 6484.22 percdiff 143.2825 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 479938 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2373 erate 0.0380 score 2282.83 - absdiff 5484.77 percdiff 109.1450 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 502457 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 1892 erate 0.0492 score 1798.91 - absdiff 5956.99 percdiff 124.6909 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 544929 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2024 erate 0.0609 score 1900.74 - absdiff 5855.17 percdiff 121.2671 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 545822 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1482 erate 0.0459 score 1413.98 - absdiff 6353.61 percdiff 138.3994 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 545826 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1472 erate 0.0401 score 1412.97 - absdiff 6354.62 percdiff 138.4363 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 582995 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 2277 erate 0.0720 score 2113.06 - absdiff 5642.85 percdiff 114.3555 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 596060 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 931 erate 0.0376 score 895.99 - absdiff 6859.91 percdiff 158.5758 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 623107 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 821 erate 0.0532 score 777.32 - absdiff 6990.27 percdiff 163.6124 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 638060 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 722 erate 0.0485 score 686.98 - absdiff 7068.93 percdiff 167.4527 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 643799 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1154 erate 0.0707 score 1072.41 - absdiff 6695.18 percdiff 151.4746 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 652603 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 1722 erate 0.0453 score 1643.99 - absdiff 6123.60 percdiff 130.1289 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 698389 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 947 erate 0.0444 score 904.95 - absdiff 6850.96 percdiff 158.2049 tig 284 read 350508 pos 24475-32552 NOT confused by 5' edge to read 698390 - best edge read 350509 len 7915 erate 0.0201 score 7755.91 - alt edge len 956 erate 0.0346 score 922.92 - absdiff 6832.99 percdiff 157.4633 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 699255 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 547 erate 0.0678 score 509.91 - absdiff 7257.68 percdiff 175.3591 tig 284 read 350508 pos 24475-32552 NOT confused by 3' edge to read 714801 - best edge read 350507 len 7914 erate 0.0185 score 7767.59 - alt edge len 2176 erate 0.0612 score 2042.83 - absdiff 5724.76 percdiff 116.7078 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 371033 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 727 erate 0.0348 score 701.70 - absdiff 2314.35 percdiff 124.5027 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 371035 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 722 erate 0.0396 score 693.41 - absdiff 2322.64 percdiff 125.2280 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 479938 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 544 erate 0.0404 score 522.02 - absdiff 2494.03 percdiff 140.9823 tig 284 read 132228 pos 25925-31635 NOT confused by 5' edge to read 530119 - best edge read 287948 len 3088 erate 0.0233 score 3016.05 - alt edge len 592 erate 0.0642 score 553.99 - absdiff 2462.06 percdiff 137.9286 saved region 19547:33053 - 22 best edges are potentially confused break tig 284 into up to 2 pieces: 0 19047 unique (length 19047) 19047 33053 repeat (length 14006) Creating Unitig 113195 Creating Unitig 113196 For tig 284 unique region 0 19047 - 0/ 42 reads repeat/unique - unitig 113195 created. For tig 284 repeat region 19047 33053 - 256/ 0 reads repeat/unique - unitig 113196 created. Annotating repeats in reads for tig 286/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 14374:15890 - contained in read 61077 9214- 16410 discard region 25242:29959 - contained in read 126182 20237- 34127 discard region 31035:32068 - contained in read 126182 20237- 34127 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 288/113047. Annotated with 1405 overlaps. Scan reads to discard spanned repeats. discard region 64:1388 - contained in read 133468 0- 5796 discard region 1368:4179 - contained in read 133468 0- 5796 thickest edges to the repeat regions: saved region 4469:24485 - closest 5' read 429969 ( +4405) 64:9588 (-14897) saved region 4469:24485 - closest 3' read 103476 (-10158) 14627:24485 ( +0) search for confused edges: tig 288 read 429969 pos 64-9588 NOT confused by 5' edge to read 283236 - best edge read 78266 len 4984 erate 0.0394 score 4787.63 - alt edge len 2260 erate 0.0627 score 2118.30 - absdiff 2669.33 percdiff 77.3055 tig 288 read 429969 pos 64-9588 NOT confused by 5' edge to read 578688 - best edge read 78266 len 4984 erate 0.0394 score 4787.63 - alt edge len 1364 erate 0.0450 score 1302.62 - absdiff 3485.01 percdiff 114.4456 tig 288 read 429969 pos 64-9588 NOT confused by 5' edge to read 578689 - best edge read 78266 len 4984 erate 0.0394 score 4787.63 - alt edge len 1365 erate 0.0398 score 1310.67 - absdiff 3476.96 percdiff 114.0303 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 36467 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1030 erate 0.0408 score 987.98 - absdiff 7174.86 percdiff 156.8136 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 78265 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1697 erate 0.0407 score 1627.93 - absdiff 6534.90 percdiff 133.4911 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 118971 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 3341 erate 0.0390 score 3210.70 - absdiff 4952.13 percdiff 87.0817 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 295488 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1570 erate 0.0617 score 1473.13 - absdiff 6689.70 percdiff 138.8486 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 377979 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1118 erate 0.0493 score 1062.88 - absdiff 7099.95 percdiff 153.9165 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 483829 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1040 erate 0.0725 score 964.60 - absdiff 7198.23 percdiff 157.7274 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 483830 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1047 erate 0.0704 score 973.29 - absdiff 7189.54 percdiff 157.3871 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 505572 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 792 erate 0.0506 score 751.92 - absdiff 7410.91 percdiff 166.2616 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 505574 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1095 erate 0.0429 score 1048.02 - absdiff 7114.81 percdiff 154.4874 tig 288 read 78266 pos 4603-13366 NOT confused by 3' edge to read 621497 - best edge read 465819 len 8355 erate 0.0230 score 8162.84 - alt edge len 1084 erate 0.0710 score 1007.04 - absdiff 7155.80 percdiff 156.0720 tig 288 read 78266 pos 4603-13366 NOT confused by 5' edge to read 625532 - best edge read 429969 len 5010 erate 0.0394 score 4812.61 - alt edge len 2146 erate 0.0469 score 2045.35 - absdiff 2767.25 percdiff 80.7020 tig 288 read 78266 pos 4603-13366 NOT confused by 5' edge to read 625533 - best edge read 429969 len 5010 erate 0.0394 score 4812.61 - alt edge len 2134 erate 0.0394 score 2049.92 - absdiff 2762.69 percdiff 80.5151 tig 288 read 78266 pos 4603-13366 NOT confused by 5' edge to read 625534 - best edge read 429969 len 5010 erate 0.0394 score 4812.61 - alt edge len 2158 erate 0.0392 score 2073.41 - absdiff 2739.20 percdiff 79.5584 tig 288 read 465819 pos 4767-13977 NOT confused by 3' edge to read 78265 - best edge read 546499 len 8452 erate 0.0492 score 8036.16 - alt edge len 2428 erate 0.0461 score 2316.07 - absdiff 5720.09 percdiff 110.5094 tig 288 read 465819 pos 4767-13977 NOT confused by 3' edge to read 295488 - best edge read 546499 len 8452 erate 0.0492 score 8036.16 - alt edge len 2299 erate 0.0693 score 2139.68 - absdiff 5896.48 percdiff 115.8918 tig 288 read 465819 pos 4767-13977 NOT confused by 3' edge to read 621498 - best edge read 546499 len 8452 erate 0.0492 score 8036.16 - alt edge len 1822 erate 0.0585 score 1715.41 - absdiff 6320.75 percdiff 129.6354 tig 288 read 465819 pos 4767-13977 NOT confused by 5' edge to read 625532 - best edge read 78266 len 8357 erate 0.0230 score 8164.79 - alt edge len 1852 erate 0.0530 score 1753.84 - absdiff 6410.94 percdiff 129.2707 tig 288 read 465819 pos 4767-13977 NOT confused by 5' edge to read 625533 - best edge read 78266 len 8357 erate 0.0230 score 8164.79 - alt edge len 1840 erate 0.0460 score 1755.36 - absdiff 6409.43 percdiff 129.2204 tig 288 read 465819 pos 4767-13977 NOT confused by 5' edge to read 625534 - best edge read 78266 len 8357 erate 0.0230 score 8164.79 - alt edge len 1864 erate 0.0463 score 1777.70 - absdiff 6387.09 percdiff 128.4808 tig 288 read 546499 pos 5370-21719 NOT confused by 5' edge to read 240660 - best edge read 465819 len 8386 erate 0.0492 score 7973.41 - alt edge len 771 erate 0.0615 score 723.58 - absdiff 7249.83 percdiff 166.7203 tig 288 read 546499 pos 5370-21719 NOT confused by 5' edge to read 625533 - best edge read 465819 len 8386 erate 0.0492 score 7973.41 - alt edge len 1195 erate 0.0573 score 1126.53 - absdiff 6846.88 percdiff 150.4820 tig 288 read 546499 pos 5370-21719 NOT confused by 5' edge to read 625534 - best edge read 465819 len 8386 erate 0.0492 score 7973.41 - alt edge len 1219 erate 0.0530 score 1154.39 - absdiff 6819.02 percdiff 149.4120 discard region 4469:24485 - no confusion in best edges Annotating repeats in reads for tig 291/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6198:8152 - closest read 520566 ( +1190) 5008:8152 ( +0) (contained) saved region 6198:8152 - closest read 691602 ( +0) 6198:12371 ( +4219) (contained) saved region 6198:8152 - closest 5' read 691602 ( +0) 6198:12371 ( +4219) saved region 6198:8152 - closest 3' read 520566 ( +1190) 5008:8152 ( +0) saved region 18376:29183 - closest 5' read 472337 ( +124) 18252:25680 ( -3503) saved region 18376:29183 - closest 3' read 22634 ( -5341) 23717:29351 ( +168) search for confused edges: discard region 6198:8152 - no confusion in best edges discard region 18376:29183 - no confusion in best edges Annotating repeats in reads for tig 295/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 12651:14656 - contained in read 168292 6760- 14656 thickest edges to the repeat regions: saved region 1234:12688 - closest 5' read 283165 ( +241) 993:9165 ( -3523) saved region 1234:12688 - closest 3' read 127269 ( -3161) 4395:12688 ( +0) search for confused edges: tig 295 read 161697 pos 0-8895 NOT confused by 5' edge to read 452429 - best edge read 487149 len 5281 erate 0.0262 score 5142.64 - alt edge len 1155 erate 0.0334 score 1116.42 - absdiff 4026.21 percdiff 128.6524 tig 295 read 161697 pos 0-8895 NOT confused by 5' edge to read 455545 - best edge read 487149 len 5281 erate 0.0262 score 5142.64 - alt edge len 1566 erate 0.0673 score 1460.61 - absdiff 3682.03 percdiff 111.5218 tig 295 read 153580 pos 1234-8916 NOT confused by 3' edge to read 452429 - best edge read 161697 len 5190 erate 0.0479 score 4941.40 - alt edge len 953 erate 0.0383 score 916.50 - absdiff 4024.90 percdiff 137.4178 tig 295 read 153580 pos 1234-8916 NOT confused by 3' edge to read 455545 - best edge read 161697 len 5190 erate 0.0479 score 4941.40 - alt edge len 1392 erate 0.0566 score 1313.21 - absdiff 3628.19 percdiff 116.0164 tig 295 read 487149 pos 1776-10907 NOT confused by 5' edge to read 452429 - best edge read 588348 len 5138 erate 0.0380 score 4942.76 - alt edge len 1280 erate 0.0515 score 1214.08 - absdiff 3728.68 percdiff 121.1231 tig 295 read 588348 pos 3437-11779 NOT confused by 5' edge to read 452429 - best edge read 588349 len 8117 erate 0.0142 score 8001.74 - alt edge len 1190 erate 0.0448 score 1136.69 - absdiff 6865.05 percdiff 150.2458 tig 295 read 588348 pos 3437-11779 NOT confused by 5' edge to read 455545 - best edge read 588349 len 8117 erate 0.0142 score 8001.74 - alt edge len 1635 erate 0.0439 score 1563.22 - absdiff 6438.52 percdiff 134.6271 tig 295 read 588349 pos 4028-12241 IS confused by 3' edge to read 452429 - best edge read 231616 len 2441 erate 0.0386 score 2346.78 - alt edge len 1271 erate 0.0491 score 1208.59 - absdiff 1138.18 percdiff 64.0261 tig 295 read 588349 pos 4028-12241 IS confused by 3' edge to read 455545 - best edge read 231616 len 2441 erate 0.0386 score 2346.78 - alt edge len 1712 erate 0.0674 score 1596.61 - absdiff 750.17 percdiff 38.0468 saved region 1234:12688 - 2 best edges are potentially confused break tig 295 into up to 3 pieces: 0 734 unique (length 734) 734 13188 repeat (length 12454) 13188 14656 unique (length 1468) Creating Unitig 113197 Creating Unitig 113198 Creating Unitig 113199 For tig 295 unique region 0 734 - 0/ 1 reads repeat/unique - unitig 113197 created. For tig 295 repeat region 734 13188 - 39/ 0 reads repeat/unique - unitig 113198 created. For tig 295 unique region 13188 14656 - 0/ 7 reads repeat/unique - unitig 113199 created. Annotating repeats in reads for tig 296/113047. Annotated with 2281 overlaps. Scan reads to discard spanned repeats. discard region 40313:42040 - contained in read 686300 38329- 43414 thickest edges to the repeat regions: saved region 975:26391 - closest 5' read 160285 ( +975) 0:13119 (-13272) saved region 975:26391 - closest 3' read 167498 (-13419) 14394:26510 ( +119) search for confused edges: tig 296 read 161947 pos 3626-16468 NOT confused by 5' edge to read 113252 - best edge read 703036 len 6149 erate 0.0584 score 5789.90 - alt edge len 1245 erate 0.0582 score 1172.54 - absdiff 4617.36 percdiff 132.6362 tig 296 read 703036 pos 5671-12827 IS confused by 5' edge to read 487585 - best edge read 161947 len 6076 erate 0.0584 score 5721.16 - alt edge len 5740 erate 0.0599 score 5396.17 - absdiff 324.99 percdiff 5.8465 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 516254 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 1837 erate 0.0715 score 1705.65 - absdiff 988.10 percdiff 44.9196 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 606199 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 2783 erate 0.0698 score 2588.75 - absdiff 105.01 percdiff 3.9756 tig 296 read 703036 pos 5671-12827 NOT confused by 5' edge to read 629732 - best edge read 161947 len 6076 erate 0.0584 score 5721.16 - alt edge len 2225 erate 0.0573 score 2097.51 - absdiff 3623.65 percdiff 92.6924 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 682536 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 2686 erate 0.0663 score 2507.92 - absdiff 185.84 percdiff 7.1452 tig 296 read 703036 pos 5671-12827 IS confused by 3' edge to read 716843 - best edge read 93171 len 2866 erate 0.0601 score 2693.75 - alt edge len 2164 erate 0.0721 score 2007.98 - absdiff 685.78 percdiff 29.1713 saved region 975:26391 - 5 best edges are potentially confused break tig 296 into up to 3 pieces: 0 475 unique (length 475) 475 26891 repeat (length 26416) 26891 52576 unique (length 25685) Creating Unitig 113200 Creating Unitig 113201 Creating Unitig 113202 For tig 296 unique region 0 475 - 0/ 1 reads repeat/unique - unitig 113200 created. For tig 296 repeat region 475 26891 - 84/ 0 reads repeat/unique - unitig 113201 created. For tig 296 unique region 26891 52576 - 0/ 27 reads repeat/unique - unitig 113202 created. Annotating repeats in reads for tig 297/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 0:5084 - contained in read 383476 0- 8894 discard region 5941:8343 - contained in read 383476 0- 8894 thickest edges to the repeat regions: saved region 11885:21092 - closest 5' read 1003 ( +0) 11885:19919 ( -1173) saved region 11885:21092 - closest 3' read 706345 ( -285) 12170:22056 ( +964) search for confused edges: discard region 11885:21092 - no confusion in best edges Annotating repeats in reads for tig 298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 302/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 0:3182 - contained in read 70938 0- 6802 discard region 4042:5893 - contained in read 70938 0- 6802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 306/113047. Annotated with 291 overlaps. Scan reads to discard spanned repeats. discard region 0:14194 - contained in read 241100 0- 15086 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 309/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 17094:18089 - contained in read 38449 15088- 24870 thickest edges to the repeat regions: saved region 5394:16419 - closest 5' read 395210 ( +91) 5303:10717 ( -5702) saved region 5394:16419 - closest 3' read 93042 ( -3534) 8928:17195 ( +776) search for confused edges: tig 309 read 395210 pos 5303-10717 IS confused by 5' edge to read 571084 - best edge read 299058 len 4802 erate 0.0378 score 4620.48 - alt edge len 4171 erate 0.0173 score 4098.84 - absdiff 521.64 percdiff 11.9652 tig 309 read 395210 pos 5303-10717 IS confused by 5' edge to read 571085 - best edge read 299058 len 4802 erate 0.0378 score 4620.48 - alt edge len 4188 erate 0.0168 score 4117.64 - absdiff 502.84 percdiff 11.5092 saved region 5394:16419 - 2 best edges are potentially confused break tig 309 into up to 3 pieces: 0 4894 unique (length 4894) 4894 16919 repeat (length 12025) 16919 36741 unique (length 19822) Creating Unitig 113203 Creating Unitig 113204 Creating Unitig 113205 For tig 309 unique region 0 4894 - 0/ 4 reads repeat/unique - unitig 113203 created. For tig 309 repeat region 4894 16919 - 29/ 0 reads repeat/unique - unitig 113204 created. For tig 309 unique region 16919 36741 - 0/ 26 reads repeat/unique - unitig 113205 created. Annotating repeats in reads for tig 315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 316/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 32135:34762 - contained in read 319775 29094- 39748 thickest edges to the repeat regions: saved region 22123:25027 - closest read 625928 ( +0) 22123:26224 ( +1197) (contained) saved region 22123:25027 - closest 5' read 625928 ( +0) 22123:26224 ( +1197) saved region 22123:25027 - closest 3' read 625928 ( +0) 22123:26224 ( +1197) search for confused edges: tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 14091 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 1670 erate 0.0496 score 1587.17 - absdiff 806.95 percdiff 40.5370 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 14093 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 1662 erate 0.0474 score 1583.22 - absdiff 810.89 percdiff 40.7757 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 359861 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 2117 erate 0.0423 score 2027.45 - absdiff 366.66 percdiff 16.5853 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 361367 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 586 erate 0.0567 score 552.77 - absdiff 1841.34 percdiff 124.9685 tig 316 read 570964 pos 15715-24720 IS confused by 3' edge to read 403110 - best edge read 625929 len 2571 erate 0.0688 score 2394.12 - alt edge len 948 erate 0.0390 score 911.03 - absdiff 1483.09 percdiff 89.7442 tig 316 read 625929 pos 22130-26253 IS confused by 3' edge to read 24832 - best edge read 570964 len 2610 erate 0.0688 score 2430.43 - alt edge len 1543 erate 0.0301 score 1496.56 - absdiff 933.88 percdiff 47.5620 tig 316 read 625929 pos 22130-26253 IS confused by 3' edge to read 436166 - best edge read 570964 len 2610 erate 0.0688 score 2430.43 - alt edge len 1430 erate 0.0253 score 1393.82 - absdiff 1036.61 percdiff 54.2125 saved region 22123:25027 - 7 best edges are potentially confused break tig 316 into up to 3 pieces: 0 21623 unique (length 21623) 21623 25527 repeat (length 3904) 25527 39748 unique (length 14221) Creating Unitig 113206 Creating Unitig 113207 For tig 316 unique region 0 21623 - 0/ 37 reads repeat/unique - unitig 113206 created. For tig 316 repeat region 21623 25527 - 0/ 0 repeat/unique reads - no new unitig created. For tig 316 unique region 25527 39748 - 0/ 14 reads repeat/unique - unitig 113207 created. Annotating repeats in reads for tig 320/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4329 - closest 5' read 595709 ( +0) 0:3963 ( -366) saved region 0:4329 - closest 3' read 317143 ( -208) 208:6668 ( +2339) search for confused edges: tig 320 read 317143 pos 208-6668 IS confused by 5' edge to read 223206 - best edge read 595709 len 3759 erate 0.0606 score 3531.20 - alt edge len 1691 erate 0.0596 score 1590.22 - absdiff 1940.99 percdiff 75.7988 tig 320 read 317143 pos 208-6668 IS confused by 5' edge to read 313926 - best edge read 595709 len 3759 erate 0.0606 score 3531.20 - alt edge len 2390 erate 0.0493 score 2272.17 - absdiff 1259.03 percdiff 43.3896 tig 320 read 317143 pos 208-6668 IS confused by 5' edge to read 514260 - best edge read 595709 len 3759 erate 0.0606 score 3531.20 - alt edge len 2664 erate 0.0563 score 2514.02 - absdiff 1017.19 percdiff 33.6526 saved region 0:4329 - 3 best edges are potentially confused break tig 320 into up to 2 pieces: 0 4829 repeat (length 4829) 4829 6668 unique (length 1839) Creating Unitig 113208 Creating Unitig 113209 For tig 320 repeat region 0 4829 - 3/ 0 reads repeat/unique - unitig 113208 created. For tig 320 unique region 4829 6668 - 0/ 3 reads repeat/unique - unitig 113209 created. Annotating repeats in reads for tig 323/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 16032:16910 - contained in read 652270 233- 18124 thickest edges to the repeat regions: saved region 32499:40297 - closest read 121753 ( +0) 32499:40513 ( +216) (contained) saved region 32499:40297 - closest 5' read 121753 ( +0) 32499:40513 ( +216) saved region 32499:40297 - closest 3' read 121753 ( +0) 32499:40513 ( +216) search for confused edges: discard region 32499:40297 - no confusion in best edges Annotating repeats in reads for tig 325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 326/113047. Annotated with 87 overlaps. Scan reads to discard spanned repeats. discard region 5038:6483 - contained in read 539031 2075- 9275 thickest edges to the repeat regions: saved region 9884:15648 - closest 5' read 504526 ( +5240) 4644:12250 ( -3398) saved region 9884:15648 - closest 3' read 561831 ( -1149) 11033:17366 ( +1718) search for confused edges: tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 284754 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 911 erate 0.0378 score 876.56 - absdiff 201.15 percdiff 20.5852 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 284755 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 910 erate 0.0424 score 871.42 - absdiff 206.29 percdiff 21.1678 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 284756 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 894 erate 0.0351 score 862.62 - absdiff 215.09 percdiff 22.1704 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 586259 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 699 erate 0.0392 score 671.60 - absdiff 406.11 percdiff 46.4310 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 588403 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 981 erate 0.0361 score 945.59 - absdiff 132.12 percdiff 13.0602 tig 326 read 556240 pos 11115-21283 IS confused by 5' edge to read 588404 - best edge read 504523 len 1133 erate 0.0488 score 1077.71 - alt edge len 985 erate 0.0415 score 944.12 - absdiff 133.59 percdiff 13.2145 saved region 9884:15648 - 6 best edges are potentially confused break tig 326 into up to 3 pieces: 0 9384 unique (length 9384) 9384 16148 repeat (length 6764) 16148 37679 unique (length 21531) Creating Unitig 113210 Creating Unitig 113211 Creating Unitig 113212 For tig 326 unique region 0 9384 - 0/ 12 reads repeat/unique - unitig 113210 created. For tig 326 repeat region 9384 16148 - 3/ 0 reads repeat/unique - unitig 113212 created. For tig 326 unique region 16148 37679 - 0/ 42 reads repeat/unique - unitig 113211 created. Annotating repeats in reads for tig 328/113047. Annotated with 616 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:20443 - closest 5' read 330139 ( +0) 0:8426 (-12017) saved region 0:20443 - closest 3' read 571983 (-12545) 12545:20443 ( +0) search for confused edges: tig 328 read 352587 pos 1875-14314 NOT confused by 3' edge to read 503548 - best edge read 609233 len 10251 erate 0.0578 score 9658.49 - alt edge len 7512 erate 0.0574 score 7080.81 - absdiff 2577.68 percdiff 30.7979 tig 328 read 352587 pos 1875-14314 NOT confused by 3' edge to read 503549 - best edge read 609233 len 10251 erate 0.0578 score 9658.49 - alt edge len 7518 erate 0.0589 score 7075.19 - absdiff 2583.30 percdiff 30.8755 tig 328 read 609233 pos 2127-14737 NOT confused by 3' edge to read 140436 - best edge read 352587 len 10289 erate 0.0576 score 9696.35 - alt edge len 3623 erate 0.0687 score 3374.10 - absdiff 6322.25 percdiff 96.7412 tig 328 read 609233 pos 2127-14737 NOT confused by 3' edge to read 699198 - best edge read 352587 len 10289 erate 0.0576 score 9696.35 - alt edge len 7764 erate 0.0411 score 7444.90 - absdiff 2251.45 percdiff 26.2694 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 140436 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 2054 erate 0.0518 score 1947.60 - absdiff 4737.64 percdiff 109.7585 tig 328 read 404627 pos 6494-16176 IS confused by 3' edge to read 558385 - best edge read 571983 len 3269 erate 0.0432 score 3127.78 - alt edge len 1532 erate 0.0542 score 1448.97 - absdiff 1678.81 percdiff 73.3628 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 669557 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 2243 erate 0.0532 score 2123.67 - absdiff 4561.57 percdiff 103.5672 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 669560 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 1911 erate 0.0556 score 1804.75 - absdiff 4880.50 percdiff 114.9706 tig 328 read 404627 pos 6494-16176 NOT confused by 5' edge to read 699198 - best edge read 609233 len 6958 erate 0.0392 score 6685.25 - alt edge len 2264 erate 0.0469 score 2157.82 - absdiff 4527.43 percdiff 102.3950 saved region 0:20443 - 1 best edges are potentially confused Annotating repeats in reads for tig 334/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 5255:13607 - contained in read 122130 53- 13607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 341/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 345/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 25388:26478 - contained in read 556498 19443- 27254 discard region 28979:33165 - contained in read 37825 21778- 34670 discard region 38615:41395 - contained in read 609867 34960- 41395 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 353/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16927:21950 - closest 5' read 522438 ( +0) 16927:21829 ( -121) saved region 16927:21950 - closest 3' read 673661 ( -6) 16933:22570 ( +620) search for confused edges: discard region 16927:21950 - no confusion in best edges Annotating repeats in reads for tig 359/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 19517:17406 - contained in read 702701 8965- 19135 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 361/113047. Annotated with 212 overlaps. Scan reads to discard spanned repeats. discard region 6893:6315 - contained in read 590367 0- 8221 thickest edges to the repeat regions: saved region 6994:8417 - closest read 343861 ( +679) 6315:8421 ( +4) (contained) saved region 6994:8417 - closest read 203613 ( +672) 6322:8417 ( +0) (contained) saved region 6994:8417 - closest 5' read 343861 ( +679) 6315:8421 ( +4) saved region 6994:8417 - closest 3' read 343861 ( +679) 6315:8421 ( +4) saved region 12580:20808 - closest 5' read 122124 ( +2043) 10537:16880 ( -3928) saved region 12580:20808 - closest 3' read 485576 ( -4709) 17289:20956 ( +148) saved region 22933:25866 - closest read 44153 ( +4444) 18489:25866 ( +0) (contained) saved region 22933:25866 - closest 5' read 44153 ( +4444) 18489:25866 ( +0) saved region 22933:25866 - closest 3' read 44153 ( +4444) 18489:25866 ( +0) saved region 33632:35165 - closest 5' read 355212 ( +8334) 25298:34688 ( -477) saved region 33632:35165 - closest 3' read 9850 ( -50) 33682:41108 ( +5943) saved region 39712:41079 - closest read 9850 ( +6030) 33682:41108 ( +29) (contained) saved region 39712:41079 - closest read 9848 ( +6029) 33683:41084 ( +5) (contained) saved region 39712:41079 - closest read 9852 ( +6027) 33685:41104 ( +25) (contained) saved region 39712:41079 - closest read 9847 ( +6026) 33686:41103 ( +24) (contained) saved region 39712:41079 - closest read 9851 ( +6020) 33692:41106 ( +27) (contained) saved region 39712:41079 - closest read 9849 ( +6017) 33695:41093 ( +14) (contained) saved region 39712:41079 - closest read 594412 ( +0) 39712:44104 ( +3025) (contained) saved region 39712:41079 - closest 5' read 594412 ( +0) 39712:44104 ( +3025) saved region 39712:41079 - closest 3' read 9850 ( +6030) 33682:41108 ( +29) search for confused edges: tig 361 read 122124 pos 10537-16880 IS confused by 3' edge to read 78703 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 3129 erate 0.0275 score 3042.95 - absdiff 23.20 percdiff 0.7595 tig 361 read 122124 pos 10537-16880 IS confused by 3' edge to read 172901 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 3040 erate 0.0385 score 2922.96 - absdiff 143.19 percdiff 4.7817 tig 361 read 122124 pos 10537-16880 NOT confused by 3' edge to read 488628 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 641 erate 0.0362 score 617.80 - absdiff 2448.36 percdiff 132.9202 tig 361 read 122124 pos 10537-16880 NOT confused by 3' edge to read 488632 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 632 erate 0.0459 score 602.99 - absdiff 2463.16 percdiff 134.2635 tig 361 read 122124 pos 10537-16880 IS confused by 3' edge to read 677507 - best edge read 284783 len 3148 erate 0.0260 score 3066.15 - alt edge len 2905 erate 0.0276 score 2824.82 - absdiff 241.33 percdiff 8.1932 tig 361 read 284783 pos 13729-19275 IS confused by 5' edge to read 321138 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 1532 erate 0.0535 score 1450.04 - absdiff 1610.27 percdiff 71.4034 tig 361 read 284783 pos 13729-19275 IS confused by 5' edge to read 335569 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 1533 erate 0.0506 score 1455.43 - absdiff 1604.88 percdiff 71.0793 tig 361 read 284783 pos 13729-19275 NOT confused by 5' edge to read 508440 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 745 erate 0.0650 score 696.58 - absdiff 2363.73 percdiff 125.8348 tig 361 read 284783 pos 13729-19275 NOT confused by 5' edge to read 568570 - best edge read 122124 len 3142 erate 0.0260 score 3060.31 - alt edge len 520 erate 0.0603 score 488.64 - absdiff 2571.66 percdiff 144.9253 tig 361 read 355212 pos 25298-34688 IS confused by 5' edge to read 72110 - best edge read 9852 len 999 erate 0.0513 score 947.75 - alt edge len 799 erate 0.0626 score 748.98 - absdiff 198.77 percdiff 23.4296 discard region 6994:8417 - no confusion in best edges saved region 12580:20808 - 5 best edges are potentially confused discard region 22933:25866 - no confusion in best edges saved region 33632:35165 - 1 best edges are potentially confused discard region 39712:41079 - no confusion in best edges break tig 361 into up to 5 pieces: 0 12080 unique (length 12080) 12080 21308 repeat (length 9228) 21308 33132 unique (length 11824) 33132 35665 repeat (length 2533) 35665 44104 unique (length 8439) Creating Unitig 113213 Creating Unitig 113214 Creating Unitig 113215 Creating Unitig 113216 Creating Unitig 113217 For tig 361 unique region 0 12080 - 0/ 22 reads repeat/unique - unitig 113213 created. For tig 361 repeat region 12080 21308 - 6/ 0 reads repeat/unique - unitig 113214 created. For tig 361 unique region 21308 33132 - 0/ 30 reads repeat/unique - unitig 113215 created. For tig 361 repeat region 33132 35665 - 1/ 0 reads repeat/unique - unitig 113217 created. For tig 361 unique region 35665 44104 - 0/ 8 reads repeat/unique - unitig 113216 created. Annotating repeats in reads for tig 362/113047. Annotated with 108 overlaps. Scan reads to discard spanned repeats. discard region 0:7110 - contained in read 719569 0- 11752 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 365/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 9926:10837 - contained in read 666954 9311- 15214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 367/113047. Annotated with 1581 overlaps. Scan reads to discard spanned repeats. discard region 861:231 - contained in read 53636 0- 5976 thickest edges to the repeat regions: saved region 12898:18882 - closest read 540389 ( +388) 12510:20005 ( +1123) (contained) saved region 12898:18882 - closest 5' read 540389 ( +388) 12510:20005 ( +1123) saved region 12898:18882 - closest 3' read 540389 ( +388) 12510:20005 ( +1123) saved region 28255:38036 - closest 5' read 140159 ( +967) 27288:33121 ( -4915) saved region 28255:38036 - closest 3' read 348202 ( -1135) 29390:38036 ( +0) search for confused edges: tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 102943 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 3572 erate 0.0370 score 3439.84 - absdiff 2746.81 percdiff 57.0678 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 318714 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 3282 erate 0.0277 score 3191.09 - absdiff 2995.56 percdiff 63.8866 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 361822 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 916 erate 0.0612 score 859.94 - absdiff 5326.71 percdiff 151.1854 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 361823 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 917 erate 0.0546 score 866.93 - absdiff 5319.72 percdiff 150.8373 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 373854 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 1391 erate 0.0568 score 1311.99 - absdiff 4874.66 percdiff 130.0144 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 503811 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2616 erate 0.0551 score 2471.86 - absdiff 3714.79 percdiff 85.8067 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 503812 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2603 erate 0.0626 score 2440.05 - absdiff 3746.60 percdiff 86.8605 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 532025 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 1158 erate 0.0467 score 1103.92 - absdiff 5082.73 percdiff 139.4329 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 563801 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2223 erate 0.0396 score 2134.97 - absdiff 4051.68 percdiff 97.3772 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 588149 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 1324 erate 0.0710 score 1230.00 - absdiff 4956.65 percdiff 133.6629 tig 367 read 550681 pos 29366-36319 NOT confused by 5' edge to read 653095 - best edge read 348202 len 6526 erate 0.0520 score 6186.65 - alt edge len 2819 erate 0.0372 score 2714.13 - absdiff 3472.51 percdiff 78.0272 discard region 12898:18882 - no confusion in best edges discard region 28255:38036 - no confusion in best edges Annotating repeats in reads for tig 369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 370/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 19962:21238 - contained in read 526294 18297- 26608 discard region 22865:24154 - contained in read 526294 18297- 26608 discard region 24999:30330 - contained in read 526295 20157- 31920 discard region 33341:35672 - contained in read 705432 29673- 37721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 371/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4811:1434 - contained in read 74210 0- 8097 discard region 6131:3509 - contained in read 74210 0- 8097 discard region 6954:5431 - contained in read 74210 0- 8097 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 372/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3080:4295 - contained in read 78207 0- 6291 thickest edges to the repeat regions: saved region 48900:49742 - closest read 284029 ( +5205) 43695:49742 ( +0) (contained) saved region 48900:49742 - closest read 523515 ( +102) 48798:55611 ( +5869) (contained) saved region 48900:49742 - closest 5' read 523515 ( +102) 48798:55611 ( +5869) saved region 48900:49742 - closest 3' read 284029 ( +5205) 43695:49742 ( +0) search for confused edges: discard region 48900:49742 - no confusion in best edges Annotating repeats in reads for tig 375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 376/113047. Annotated with 1363 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:13080 - closest 5' read 510904 ( +0) 0:5732 ( -7348) saved region 0:13080 - closest 3' read 571856 ( -5777) 5777:13080 ( +0) search for confused edges: tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 9364 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1327 erate 0.0590 score 1248.71 - absdiff 4965.07 percdiff 133.0675 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 140414 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 2498 erate 0.0569 score 2355.86 - absdiff 3857.91 percdiff 90.0367 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 140415 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 2497 erate 0.0549 score 2359.91 - absdiff 3853.86 percdiff 89.8997 tig 376 read 682536 pos 1478-9844 IS confused by 3' edge to read 230528 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 4510 erate 0.0570 score 4252.93 - absdiff 1960.84 percdiff 37.4682 tig 376 read 682536 pos 1478-9844 IS confused by 3' edge to read 230529 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 4745 erate 0.0492 score 4511.55 - absdiff 1702.23 percdiff 31.7422 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 481664 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1867 erate 0.0648 score 1746.02 - absdiff 4467.76 percdiff 112.2581 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 550898 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1391 erate 0.0690 score 1295.02 - absdiff 4918.75 percdiff 131.0131 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 595206 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 1454 erate 0.0625 score 1363.12 - absdiff 4850.65 percdiff 128.0378 tig 376 read 682536 pos 1478-9844 NOT confused by 3' edge to read 703036 - best edge read 110652 len 6655 erate 0.0663 score 6213.77 - alt edge len 2691 erate 0.0663 score 2512.59 - absdiff 3701.19 percdiff 84.8277 tig 376 read 110652 pos 2163-11006 IS confused by 5' edge to read 40822 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 4844 erate 0.0663 score 4522.84 - absdiff 1730.15 percdiff 32.1116 tig 376 read 110652 pos 2163-11006 IS confused by 5' edge to read 113252 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 6223 erate 0.0667 score 5807.93 - absdiff 445.06 percdiff 7.3803 tig 376 read 110652 pos 2163-11006 NOT confused by 5' edge to read 140414 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 880 erate 0.0441 score 841.19 - absdiff 5411.80 percdiff 152.5700 tig 376 read 110652 pos 2163-11006 NOT confused by 5' edge to read 140415 - best edge read 682536 len 6697 erate 0.0663 score 6252.99 - alt edge len 893 erate 0.0493 score 848.98 - absdiff 5404.01 percdiff 152.1836 tig 376 read 629732 pos 4856-12200 NOT confused by 3' edge to read 638612 - best edge read 621144 len 4488 erate 0.0398 score 4309.38 - alt edge len 2162 erate 0.0664 score 2018.44 - absdiff 2290.93 percdiff 72.4083 tig 376 read 629732 pos 4856-12200 NOT confused by 3' edge to read 638614 - best edge read 621144 len 4488 erate 0.0398 score 4309.38 - alt edge len 2204 erate 0.0630 score 2065.15 - absdiff 2244.23 percdiff 70.4124 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 286355 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 568 erate 0.0725 score 526.82 - absdiff 3821.93 percdiff 156.7788 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 504829 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 531 erate 0.0637 score 497.18 - absdiff 3851.57 percdiff 158.9613 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 504830 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 545 erate 0.0677 score 508.10 - absdiff 3840.64 percdiff 158.1537 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 606197 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 566 erate 0.0538 score 535.55 - absdiff 3813.20 percdiff 156.1411 tig 376 read 621144 pos 6837-11902 NOT confused by 3' edge to read 606199 - best edge read 629732 len 4529 erate 0.0398 score 4348.75 - alt edge len 567 erate 0.0639 score 530.77 - absdiff 3817.98 percdiff 156.4900 tig 376 read 343734 pos 9900-15791 IS confused by 3' edge to read 590995 - best edge read 621144 len 2460 erate 0.0496 score 2337.98 - alt edge len 1535 erate 0.0596 score 1443.51 - absdiff 894.47 percdiff 47.3077 saved region 0:13080 - 5 best edges are potentially confused break tig 376 into up to 2 pieces: 0 13580 repeat (length 13580) 13580 15791 unique (length 2211) Creating Unitig 113218 Creating Unitig 113219 For tig 376 repeat region 0 13580 - 47/ 0 reads repeat/unique - unitig 113218 created. For tig 376 unique region 13580 15791 - 0/ 1 reads repeat/unique - unitig 113219 created. Annotating repeats in reads for tig 377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 379/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15191:22061 - closest 5' read 623235 ( +0) 15191:22052 ( -9) saved region 15191:22061 - closest 3' read 205142 ( -18) 15209:23250 ( +1189) search for confused edges: tig 379 read 661168 pos 9712-16791 IS confused by 3' edge to read 81186 - best edge read 430778 len 1589 erate 0.0442 score 1518.77 - alt edge len 725 erate 0.0570 score 683.67 - absdiff 835.09 percdiff 75.8332 tig 379 read 661168 pos 9712-16791 IS confused by 3' edge to read 711566 - best edge read 430778 len 1589 erate 0.0442 score 1518.77 - alt edge len 1474 erate 0.0353 score 1421.97 - absdiff 96.80 percdiff 6.5833 tig 379 read 430778 pos 15212-22046 NOT confused by 3' edge to read 105514 - best edge read 205142 len 6782 erate 0.0353 score 6542.60 - alt edge len 1471 erate 0.0306 score 1425.99 - absdiff 5116.61 percdiff 128.4195 tig 379 read 430778 pos 15212-22046 NOT confused by 3' edge to read 105515 - best edge read 205142 len 6782 erate 0.0353 score 6542.60 - alt edge len 1478 erate 0.0318 score 1431.00 - absdiff 5111.60 percdiff 128.2131 tig 379 read 430778 pos 15212-22046 IS confused by 3' edge to read 711566 - best edge read 205142 len 6782 erate 0.0353 score 6542.60 - alt edge len 6681 erate 0.0341 score 6453.18 - absdiff 89.42 percdiff 1.3761 saved region 15191:22061 - 3 best edges are potentially confused break tig 379 into up to 3 pieces: 0 14691 unique (length 14691) 14691 22561 repeat (length 7870) 22561 43901 unique (length 21340) Creating Unitig 113220 Creating Unitig 113221 Creating Unitig 113222 For tig 379 unique region 0 14691 - 0/ 23 reads repeat/unique - unitig 113220 created. For tig 379 repeat region 14691 22561 - 18/ 0 reads repeat/unique - unitig 113221 created. For tig 379 unique region 22561 43901 - 0/ 30 reads repeat/unique - unitig 113222 created. Annotating repeats in reads for tig 381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 382/113047. Annotated with 1321 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16099:33818 - closest 5' read 404046 ( +0) 16099:24667 ( -9151) saved region 16099:33818 - closest 3' read 496591 ( -8536) 24635:33818 ( +0) search for confused edges: tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 153910 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 2942 erate 0.0459 score 2806.96 - absdiff 1206.28 percdiff 35.3736 tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 153911 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 3061 erate 0.0402 score 2937.95 - absdiff 1075.29 percdiff 30.9383 tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 434120 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 2922 erate 0.0365 score 2815.35 - absdiff 1197.89 percdiff 35.0846 tig 382 read 622845 pos 17635-26549 IS confused by 5' edge to read 575521 - best edge read 672607 len 4194 erate 0.0431 score 4013.24 - alt edge len 2707 erate 0.0399 score 2598.99 - absdiff 1414.25 percdiff 42.7767 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 16358 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2818 erate 0.0735 score 2610.88 - absdiff 1835.07 percdiff 52.0084 tig 382 read 261129 pos 21300-29154 NOT confused by 3' edge to read 121031 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 1663 erate 0.0667 score 1552.08 - absdiff 2893.87 percdiff 96.4941 tig 382 read 261129 pos 21300-29154 NOT confused by 5' edge to read 438836 - best edge read 496587 len 4737 erate 0.0311 score 4589.68 - alt edge len 622 erate 0.0617 score 583.62 - absdiff 4006.06 percdiff 154.8743 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 454220 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2507 erate 0.0459 score 2391.93 - absdiff 2054.02 percdiff 60.0777 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 454221 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2512 erate 0.0485 score 2390.17 - absdiff 2055.78 percdiff 60.1446 tig 382 read 261129 pos 21300-29154 NOT confused by 5' edge to read 575521 - best edge read 496587 len 4737 erate 0.0311 score 4589.68 - alt edge len 1558 erate 0.0161 score 1532.92 - absdiff 3056.76 percdiff 99.8519 tig 382 read 261129 pos 21300-29154 NOT confused by 5' edge to read 642949 - best edge read 496587 len 4737 erate 0.0311 score 4589.68 - alt edge len 631 erate 0.0240 score 615.86 - absdiff 3973.82 percdiff 152.6768 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 644605 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 2969 erate 0.0296 score 2881.12 - absdiff 1564.83 percdiff 42.7137 tig 382 read 261129 pos 21300-29154 IS confused by 3' edge to read 644608 - best edge read 672607 len 4601 erate 0.0337 score 4445.95 - alt edge len 4157 erate 0.0171 score 4085.92 - absdiff 360.03 percdiff 8.4397 tig 382 read 496587 pos 23244-32540 IS confused by 3' edge to read 16358 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 3440 erate 0.0724 score 3190.94 - absdiff 1394.86 percdiff 35.8726 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 22799 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 737 erate 0.0658 score 688.51 - absdiff 3897.30 percdiff 147.7842 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 121031 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 2269 erate 0.0672 score 2116.52 - absdiff 2469.28 percdiff 73.6843 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 426363 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 846 erate 0.0520 score 802.01 - absdiff 3783.80 percdiff 140.4576 tig 382 read 496587 pos 23244-32540 IS confused by 3' edge to read 454220 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 4691 erate 0.0251 score 4573.26 - absdiff 12.55 percdiff 0.2740 tig 382 read 496587 pos 23244-32540 IS confused by 3' edge to read 454221 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 4696 erate 0.0290 score 4559.82 - absdiff 25.99 percdiff 0.5683 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 642949 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 738 erate 0.0628 score 691.65 - absdiff 3894.15 percdiff 147.5768 tig 382 read 496587 pos 23244-32540 NOT confused by 3' edge to read 644608 - best edge read 261129 len 4733 erate 0.0311 score 4585.80 - alt edge len 1145 erate 0.0524 score 1085.00 - absdiff 3500.80 percdiff 123.4675 tig 382 read 575521 pos 29537-35196 NOT confused by 5' edge to read 121031 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 672 erate 0.0655 score 627.98 - absdiff 2839.78 percdiff 138.6697 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 261129 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1557 erate 0.0161 score 1531.93 - absdiff 1935.84 percdiff 77.4381 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 404044 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 2331 erate 0.0418 score 2233.56 - absdiff 1234.20 percdiff 43.2953 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 454220 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1515 erate 0.0481 score 1442.13 - absdiff 2025.64 percdiff 82.5125 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 454221 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1520 erate 0.0536 score 1438.53 - absdiff 2029.24 percdiff 82.7199 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 622845 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 2713 erate 0.0399 score 2604.75 - absdiff 863.02 percdiff 28.4237 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 642949 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 2753 erate 0.0241 score 2686.65 - absdiff 781.12 percdiff 25.3839 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 644605 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 1973 erate 0.0345 score 1904.93 - absdiff 1562.84 percdiff 58.1770 tig 382 read 575521 pos 29537-35196 IS confused by 5' edge to read 644608 - best edge read 672607 len 3604 erate 0.0378 score 3467.77 - alt edge len 3161 erate 0.0158 score 3111.06 - absdiff 356.71 percdiff 10.8443 saved region 16099:33818 - 20 best edges are potentially confused break tig 382 into up to 3 pieces: 0 15599 unique (length 15599) 15599 34318 repeat (length 18719) 34318 35353 unique (length 1035) Creating Unitig 113223 Creating Unitig 113224 Creating Unitig 113225 For tig 382 unique region 0 15599 - 0/ 28 reads repeat/unique - unitig 113223 created. For tig 382 repeat region 15599 34318 - 82/ 0 reads repeat/unique - unitig 113224 created. For tig 382 unique region 34318 35353 - 0/ 10 reads repeat/unique - unitig 113225 created. Annotating repeats in reads for tig 383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 384/113047. Annotated with 102 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 24273:39938 - closest 5' read 319180 ( +6236) 18037:31913 ( -8025) saved region 24273:39938 - closest 3' read 617903 ( -7043) 31316:39938 ( +0) search for confused edges: tig 384 read 561487 pos 26755-36486 IS confused by 5' edge to read 369758 - best edge read 319180 len 5219 erate 0.0353 score 5034.77 - alt edge len 4820 erate 0.0366 score 4643.59 - absdiff 391.18 percdiff 8.0836 tig 384 read 561487 pos 26755-36486 IS confused by 5' edge to read 468260 - best edge read 319180 len 5219 erate 0.0353 score 5034.77 - alt edge len 5219 erate 0.0673 score 4867.76 - absdiff 167.01 percdiff 3.3730 tig 384 read 507288 pos 30042-37989 NOT confused by 5' edge to read 369758 - best edge read 561487 len 7147 erate 0.0197 score 7006.20 - alt edge len 2329 erate 0.0324 score 2253.54 - absdiff 4752.66 percdiff 102.6522 tig 384 read 507287 pos 30062-37979 NOT confused by 3' edge to read 369758 - best edge read 507288 len 7842 erate 0.0255 score 7642.03 - alt edge len 2290 erate 0.0332 score 2213.97 - absdiff 5428.06 percdiff 110.1472 tig 384 read 665113 pos 31064-38008 NOT confused by 3' edge to read 369758 - best edge read 617902 len 6675 erate 0.0064 score 6632.28 - alt edge len 2827 erate 0.0191 score 2773.00 - absdiff 3859.28 percdiff 82.0661 tig 384 read 617902 pos 31285-39786 NOT confused by 5' edge to read 369758 - best edge read 617903 len 8445 erate 0.0079 score 8378.28 - alt edge len 4603 erate 0.0226 score 4498.97 - absdiff 3879.31 percdiff 60.2506 tig 384 read 617902 pos 31285-39786 NOT confused by 5' edge to read 468260 - best edge read 617903 len 8445 erate 0.0079 score 8378.28 - alt edge len 5000 erate 0.0554 score 4723.00 - absdiff 3655.28 percdiff 55.8004 tig 384 read 617904 pos 31315-39925 IS confused by 5' edge to read 369758 - best edge read 319180 len 5136 erate 0.0361 score 4950.59 - alt edge len 4741 erate 0.0381 score 4560.37 - absdiff 390.22 percdiff 8.2057 tig 384 read 617904 pos 31315-39925 IS confused by 5' edge to read 468260 - best edge read 319180 len 5136 erate 0.0361 score 4950.59 - alt edge len 5136 erate 0.0691 score 4781.10 - absdiff 169.49 percdiff 3.4832 saved region 24273:39938 - 4 best edges are potentially confused break tig 384 into up to 2 pieces: 0 23773 unique (length 23773) 23773 39938 repeat (length 16165) Creating Unitig 113226 Creating Unitig 113227 For tig 384 unique region 0 23773 - 0/ 37 reads repeat/unique - unitig 113226 created. For tig 384 repeat region 23773 39938 - 56/ 0 reads repeat/unique - unitig 113227 created. Annotating repeats in reads for tig 386/113047. Annotated with 2054 overlaps. Scan reads to discard spanned repeats. discard region 0:5006 - contained in read 514735 0- 10758 thickest edges to the repeat regions: saved region 5819:26071 - closest 5' read 522455 ( +1609) 4210:15031 (-11040) saved region 5819:26071 - closest 3' read 48215 ( -7391) 13210:26071 ( +0) saved region 33654:39377 - closest 5' read 21567 ( +2811) 30843:37244 ( -2133) saved region 33654:39377 - closest 3' read 377938 ( -20) 33674:40005 ( +628) search for confused edges: tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 24360 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 1497 erate 0.0708 score 1391.01 - absdiff 8755.62 percdiff 151.7748 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 53222 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 604 erate 0.0646 score 564.98 - absdiff 9581.65 percdiff 178.9021 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 225032 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 3763 erate 0.0489 score 3578.99 - absdiff 6567.65 percdiff 95.6991 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 337025 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 3796 erate 0.0579 score 3576.21 - absdiff 6570.42 percdiff 95.7589 tig 386 read 496412 pos 8617-21985 NOT confused by 3' edge to read 534660 - best edge read 451840 len 10440 erate 0.0281 score 10146.64 - alt edge len 3956 erate 0.0415 score 3791.83 - absdiff 6354.81 percdiff 91.1838 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 104540 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 1893 erate 0.0439 score 1809.90 - absdiff 8266.76 percdiff 139.0943 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 123102 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 2488 erate 0.0664 score 2322.80 - absdiff 7753.86 percdiff 125.0678 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 330219 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 1855 erate 0.0708 score 1723.67 - absdiff 8352.99 percdiff 141.5723 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 330220 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 911 erate 0.0590 score 857.25 - absdiff 9219.41 percdiff 168.6388 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 352782 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 583 erate 0.0586 score 548.84 - absdiff 9527.82 percdiff 179.3389 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 521790 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 3479 erate 0.0296 score 3376.02 - absdiff 6700.64 percdiff 99.6179 tig 386 read 451840 pos 10353-23316 IS confused by 3' edge to read 534660 - best edge read 471952 len 4931 erate 0.0742 score 4565.12 - alt edge len 4136 erate 0.0621 score 3879.15 - absdiff 685.97 percdiff 16.2469 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 585475 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 3418 erate 0.0696 score 3180.11 - absdiff 6896.55 percdiff 104.0458 tig 386 read 451840 pos 10353-23316 NOT confused by 5' edge to read 627789 - best edge read 496412 len 10368 erate 0.0281 score 10076.66 - alt edge len 2077 erate 0.0338 score 2006.80 - absdiff 8069.86 percdiff 133.5688 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 104540 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 2020 erate 0.0500 score 1919.00 - absdiff 3299.52 percdiff 92.4556 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 146597 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 758 erate 0.0744 score 701.60 - absdiff 4516.91 percdiff 152.5953 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 330220 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 1344 erate 0.0653 score 1256.24 - absdiff 3962.28 percdiff 122.3917 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 521790 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 2334 erate 0.0397 score 2241.34 - absdiff 2977.18 percdiff 79.8186 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 576386 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 2568 erate 0.0519 score 2434.72 - absdiff 2783.80 percdiff 72.7482 tig 386 read 603014 pos 10738-16696 NOT confused by 3' edge to read 627789 - best edge read 471952 len 5469 erate 0.0458 score 5218.52 - alt edge len 1881 erate 0.0399 score 1805.95 - absdiff 3412.57 percdiff 97.1624 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 104540 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2750 erate 0.0247 score 2682.08 - absdiff 1962.66 percdiff 53.5748 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 120302 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1466 erate 0.0477 score 1396.07 - absdiff 3248.67 percdiff 107.5573 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 123102 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 3032 erate 0.0528 score 2871.91 - absdiff 1772.83 percdiff 47.1707 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 123103 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2957 erate 0.0619 score 2773.96 - absdiff 1870.78 percdiff 50.4341 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 146597 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1486 erate 0.0566 score 1401.89 - absdiff 3242.85 percdiff 107.2613 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 212388 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1531 erate 0.0490 score 1455.98 - absdiff 3188.76 percdiff 104.5371 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 350220 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1976 erate 0.0515 score 1874.24 - absdiff 2770.50 percdiff 84.9981 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 352781 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2069 erate 0.0561 score 1952.93 - absdiff 2691.81 percdiff 81.5988 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 352782 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 2066 erate 0.0561 score 1950.10 - absdiff 2694.64 percdiff 81.7197 tig 386 read 471952 pos 12060-18609 NOT confused by 5' edge to read 484784 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 1139 erate 0.0554 score 1075.90 - absdiff 3568.84 percdiff 124.7707 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 521790 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 4031 erate 0.0535 score 3815.34 - absdiff 829.40 percdiff 19.6073 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 553939 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 3983 erate 0.0601 score 3743.62 - absdiff 901.12 percdiff 21.4849 tig 386 read 471952 pos 12060-18609 IS confused by 5' edge to read 627789 - best edge read 451840 len 5017 erate 0.0742 score 4644.74 - alt edge len 3584 erate 0.0201 score 3511.96 - absdiff 1132.78 percdiff 27.7754 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 225032 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 2930 erate 0.0423 score 2806.06 - absdiff 3080.86 percdiff 70.8816 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 306821 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 2451 erate 0.0598 score 2304.43 - absdiff 3582.49 percdiff 87.4701 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 337025 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 3611 erate 0.0507 score 3427.92 - absdiff 2459.00 percdiff 52.7975 tig 386 read 48215 pos 13210-26071 IS confused by 3' edge to read 514738 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 4326 erate 0.0197 score 4240.78 - absdiff 1646.15 percdiff 32.5078 tig 386 read 48215 pos 13210-26071 NOT confused by 3' edge to read 534660 - best edge read 451840 len 6059 erate 0.0284 score 5886.92 - alt edge len 3449 erate 0.0337 score 3332.77 - absdiff 2554.16 percdiff 55.4065 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 176192 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2968 erate 0.0447 score 2835.33 - absdiff 18.70 percdiff 0.6573 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 408664 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2941 erate 0.0481 score 2799.54 - absdiff 54.49 percdiff 1.9277 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 514738 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 1067 erate 0.0409 score 1023.36 - absdiff 1830.67 percdiff 94.4279 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 522455 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 1589 erate 0.0585 score 1496.04 - absdiff 1357.99 percdiff 62.4351 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 534660 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2120 erate 0.0616 score 1989.41 - absdiff 864.62 percdiff 35.7028 tig 386 read 576386 pos 18452-23872 IS confused by 3' edge to read 603014 - best edge read 496412 len 2968 erate 0.0384 score 2854.03 - alt edge len 2561 erate 0.0519 score 2428.08 - absdiff 425.94 percdiff 16.1278 saved region 5819:26071 - 14 best edges are potentially confused discard region 33654:39377 - no confusion in best edges break tig 386 into up to 3 pieces: 0 5319 unique (length 5319) 5319 26571 repeat (length 21252) 26571 44088 unique (length 17517) Creating Unitig 113228 Creating Unitig 113229 Creating Unitig 113230 For tig 386 unique region 0 5319 - 0/ 10 reads repeat/unique - unitig 113228 created. For tig 386 repeat region 5319 26571 - 183/ 0 reads repeat/unique - unitig 113229 created. For tig 386 unique region 26571 44088 - 0/ 46 reads repeat/unique - unitig 113230 created. Annotating repeats in reads for tig 388/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 396/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 0:1780 - contained in read 360149 0- 6201 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 398/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 1246:3971 - contained in read 313017 0- 5731 thickest edges to the repeat regions: saved region 10192:14430 - closest 5' read 220680 ( +3385) 6807:14308 ( -122) saved region 10192:14430 - closest 3' read 705796 ( -1215) 11407:14430 ( +0) search for confused edges: tig 398 read 180422 pos 12349-16301 IS confused by 5' edge to read 366016 - best edge read 220680 len 1933 erate 0.0538 score 1829.00 - alt edge len 970 erate 0.0380 score 933.14 - absdiff 895.86 percdiff 64.8673 saved region 10192:14430 - 1 best edges are potentially confused break tig 398 into up to 3 pieces: 0 9692 unique (length 9692) 9692 14930 repeat (length 5238) 14930 32999 unique (length 18069) Creating Unitig 113231 Creating Unitig 113232 Creating Unitig 113233 For tig 398 unique region 0 9692 - 0/ 34 reads repeat/unique - unitig 113231 created. For tig 398 repeat region 9692 14930 - 13/ 0 reads repeat/unique - unitig 113232 created. For tig 398 unique region 14930 32999 - 0/ 33 reads repeat/unique - unitig 113233 created. Annotating repeats in reads for tig 399/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 0:5626 - contained in read 113974 0- 6550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 400/113047. Annotated with 1039 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14963 - closest 5' read 38311 ( +0) 0:7866 ( -7097) saved region 0:14963 - closest 3' read 111422 ( -6113) 6113:16442 ( +1479) search for confused edges: tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 258764 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 612 erate 0.0327 score 591.99 - absdiff 5098.90 percdiff 162.3110 tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 258766 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 613 erate 0.0375 score 590.01 - absdiff 5100.87 percdiff 162.4249 tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 258769 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 614 erate 0.0391 score 589.99 - absdiff 5100.89 percdiff 162.4261 tig 400 read 286039 pos 175-10040 NOT confused by 3' edge to read 635073 - best edge read 611731 len 5941 erate 0.0421 score 5690.88 - alt edge len 782 erate 0.0601 score 735.00 - absdiff 4955.88 percdiff 154.2474 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 54714 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 1296 erate 0.0293 score 1258.03 - absdiff 1528.88 percdiff 75.5949 tig 400 read 611731 pos 816-8907 IS confused by 3' edge to read 54715 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 5624 erate 0.0400 score 5399.04 - absdiff 288.01 percdiff 5.1959 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 258764 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 2697 erate 0.0223 score 2636.86 - absdiff 150.05 percdiff 5.5332 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 258766 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 2698 erate 0.0204 score 2642.96 - absdiff 143.95 percdiff 5.3021 tig 400 read 611731 pos 816-8907 IS confused by 5' edge to read 258769 - best edge read 275687 len 2885 erate 0.0340 score 2786.91 - alt edge len 2699 erate 0.0197 score 2645.83 - absdiff 141.08 percdiff 5.1937 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 364992 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 1982 erate 0.0267 score 1929.08 - absdiff 3757.97 percdiff 98.6845 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 542811 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 1963 erate 0.0423 score 1879.97 - absdiff 3807.09 percdiff 100.6232 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 575958 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 2830 erate 0.0646 score 2647.18 - absdiff 3039.87 percdiff 72.9490 tig 400 read 611731 pos 816-8907 NOT confused by 3' edge to read 644067 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 1699 erate 0.0424 score 1626.96 - absdiff 4060.09 percdiff 111.0222 tig 400 read 611731 pos 816-8907 IS confused by 3' edge to read 648663 - best edge read 286039 len 5937 erate 0.0421 score 5687.05 - alt edge len 5901 erate 0.0405 score 5662.01 - absdiff 25.04 percdiff 0.4413 tig 400 read 275687 pos 5610-14464 NOT confused by 5' edge to read 258764 - best edge read 466897 len 5801 erate 0.0472 score 5527.19 - alt edge len 2755 erate 0.0361 score 2655.54 - absdiff 2871.65 percdiff 70.1880 tig 400 read 275687 pos 5610-14464 NOT confused by 5' edge to read 258766 - best edge read 466897 len 5801 erate 0.0472 score 5527.19 - alt edge len 2756 erate 0.0361 score 2656.51 - absdiff 2870.68 percdiff 70.1561 tig 400 read 275687 pos 5610-14464 NOT confused by 5' edge to read 258769 - best edge read 466897 len 5801 erate 0.0472 score 5527.19 - alt edge len 2757 erate 0.0361 score 2657.47 - absdiff 2869.72 percdiff 70.1243 saved region 0:14963 - 6 best edges are potentially confused break tig 400 into up to 2 pieces: 0 15463 repeat (length 15463) 15463 16442 unique (length 979) Creating Unitig 113234 Creating Unitig 113235 For tig 400 repeat region 0 15463 - 32/ 0 reads repeat/unique - unitig 113234 created. For tig 400 unique region 15463 16442 - 0/ 1 reads repeat/unique - unitig 113235 created. Annotating repeats in reads for tig 402/113047. Annotated with 124 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3756:8842 - closest read 149742 ( +0) 3756:8850 ( +8) (contained) saved region 3756:8842 - closest 5' read 149742 ( +0) 3756:8850 ( +8) saved region 3756:8842 - closest 3' read 149742 ( +0) 3756:8850 ( +8) saved region 11619:18647 - closest read 645271 ( +0) 11619:18935 ( +288) (contained) saved region 11619:18647 - closest 5' read 645271 ( +0) 11619:18935 ( +288) saved region 11619:18647 - closest 3' read 645271 ( +0) 11619:18935 ( +288) saved region 21274:23103 - closest read 616916 ( +188) 21086:25525 ( +2422) (contained) saved region 21274:23103 - closest read 77208 ( +0) 21274:30682 ( +7579) (contained) saved region 21274:23103 - closest 5' read 77208 ( +0) 21274:30682 ( +7579) saved region 21274:23103 - closest 3' read 616916 ( +188) 21086:25525 ( +2422) search for confused edges: tig 402 read 215350 pos 384-8633 IS confused by 3' edge to read 166015 - best edge read 574055 len 2782 erate 0.0180 score 2731.92 - alt edge len 1245 erate 0.0414 score 1193.46 - absdiff 1538.47 percdiff 78.3856 tig 402 read 215350 pos 384-8633 IS confused by 3' edge to read 238980 - best edge read 574055 len 2782 erate 0.0180 score 2731.92 - alt edge len 1248 erate 0.0507 score 1184.73 - absdiff 1547.20 percdiff 79.0062 saved region 3756:8842 - 2 best edges are potentially confused discard region 11619:18647 - no confusion in best edges discard region 21274:23103 - no confusion in best edges break tig 402 into up to 3 pieces: 0 3256 unique (length 3256) 3256 9342 repeat (length 6086) 9342 39626 unique (length 30284) Creating Unitig 113236 Creating Unitig 113237 Creating Unitig 113238 For tig 402 unique region 0 3256 - 0/ 8 reads repeat/unique - unitig 113236 created. For tig 402 repeat region 3256 9342 - 13/ 0 reads repeat/unique - unitig 113237 created. For tig 402 unique region 9342 39626 - 0/ 37 reads repeat/unique - unitig 113238 created. Annotating repeats in reads for tig 406/113047. Annotated with 1013 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10375 - closest 5' read 643871 ( +0) 0:8431 ( -1944) saved region 0:10375 - closest 3' read 478040 ( -5609) 5609:14055 ( +3680) saved region 11945:14628 - closest 5' read 478042 ( +6086) 5859:14566 ( -62) saved region 11945:14628 - closest 3' read 54052 ( -529) 12474:23559 ( +8931) search for confused edges: tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 52536 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1424 erate 0.0429 score 1362.91 - absdiff 1223.61 percdiff 61.9639 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 52537 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1409 erate 0.0397 score 1353.06 - absdiff 1233.46 percdiff 62.6188 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 89831 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1184 erate 0.0651 score 1106.92 - absdiff 1479.60 percdiff 80.1204 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 94597 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1460 erate 0.0480 score 1389.92 - absdiff 1196.60 percdiff 60.1846 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 166756 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2142 erate 0.0588 score 2016.05 - absdiff 570.47 percdiff 24.7893 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 166758 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2141 erate 0.0645 score 2002.91 - absdiff 583.62 percdiff 25.4331 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 236227 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 621 erate 0.0555 score 586.53 - absdiff 1999.99 percdiff 126.0606 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 238313 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2358 erate 0.0446 score 2252.83 - absdiff 333.69 percdiff 13.7906 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 247072 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2148 erate 0.0736 score 1989.91 - absdiff 596.62 percdiff 26.0734 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 336357 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2432 erate 0.0581 score 2290.70 - absdiff 295.82 percdiff 12.1307 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 554187 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1319 erate 0.0553 score 1246.06 - absdiff 1340.46 percdiff 69.9509 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 608472 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2324 erate 0.0353 score 2241.96 - absdiff 344.56 percdiff 14.2720 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 608476 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2320 erate 0.0380 score 2231.84 - absdiff 354.68 percdiff 14.7221 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 609430 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1501 erate 0.0581 score 1413.79 - absdiff 1172.73 percdiff 58.6319 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 609431 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1494 erate 0.0601 score 1404.21 - absdiff 1182.31 percdiff 59.2529 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 609433 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1497 erate 0.0552 score 1414.37 - absdiff 1172.16 percdiff 58.5948 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 611814 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2386 erate 0.0531 score 2259.30 - absdiff 327.22 percdiff 13.5052 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 628083 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2120 erate 0.0368 score 2041.98 - absdiff 544.54 percdiff 23.5298 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 628084 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 2110 erate 0.0342 score 2037.84 - absdiff 548.68 percdiff 23.7302 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 637543 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 1758 erate 0.0586 score 1654.98 - absdiff 931.54 percdiff 43.9250 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 657250 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 775 erate 0.0658 score 724.00 - absdiff 1862.52 percdiff 112.5209 tig 406 read 478039 pos 5632-14517 IS confused by 5' edge to read 657252 - best edge read 643871 len 2786 erate 0.0716 score 2586.52 - alt edge len 805 erate 0.0659 score 751.95 - absdiff 1834.57 percdiff 109.9049 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 128466 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1517 erate 0.0455 score 1447.98 - absdiff 453.11 percdiff 27.0591 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 128467 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1888 erate 0.0556 score 1783.03 - absdiff 118.06 percdiff 6.4093 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 146271 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 704 erate 0.0577 score 663.38 - absdiff 1237.71 percdiff 96.5277 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 153997 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1273 erate 0.0503 score 1208.97 - absdiff 692.12 percdiff 44.5086 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 181403 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1480 erate 0.0560 score 1397.12 - absdiff 503.97 percdiff 30.5602 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 201862 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 605 erate 0.0449 score 577.84 - absdiff 1323.25 percdiff 106.7603 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 217044 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1436 erate 0.0460 score 1369.94 - absdiff 531.15 percdiff 32.4757 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 239302 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1441 erate 0.0574 score 1358.29 - absdiff 542.80 percdiff 33.3072 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 276496 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 547 erate 0.0404 score 524.90 - absdiff 1376.19 percdiff 113.4537 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 312191 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1114 erate 0.0586 score 1048.72 - absdiff 852.37 percdiff 57.7916 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 318433 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1947 erate 0.0529 score 1844.00 - absdiff 57.09 percdiff 3.0486 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 326906 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1768 erate 0.0539 score 1672.70 - absdiff 228.39 percdiff 12.7811 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 326908 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1725 erate 0.0622 score 1617.70 - absdiff 283.39 percdiff 16.1070 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 402940 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 826 erate 0.0436 score 789.99 - absdiff 1111.10 percdiff 82.5769 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 419709 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 624 erate 0.0517 score 591.74 - absdiff 1309.35 percdiff 105.0494 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 431510 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 2006 erate 0.0429 score 1919.94 - absdiff 18.85 percdiff 0.9868 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 449040 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1168 erate 0.0515 score 1107.85 - absdiff 793.24 percdiff 52.7257 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 510339 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1976 erate 0.0390 score 1898.94 - absdiff 2.15 percdiff 0.1134 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 518972 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 841 erate 0.0404 score 807.02 - absdiff 1094.07 percdiff 80.7992 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 520339 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 1962 erate 0.0526 score 1858.80 - absdiff 42.29 percdiff 2.2496 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 535759 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 745 erate 0.0523 score 706.04 - absdiff 1195.05 percdiff 91.6759 tig 406 read 54052 pos 12474-23559 IS confused by 5' edge to read 535761 - best edge read 478039 len 2019 erate 0.0584 score 1901.09 - alt edge len 742 erate 0.0540 score 701.93 - absdiff 1199.16 percdiff 92.1358 saved region 0:10375 - 22 best edges are potentially confused saved region 11945:14628 - 22 best edges are potentially confused break tig 406 into up to 4 pieces: 0 10875 repeat (length 10875) 10875 11445 unique (length 570) 11445 15128 repeat (length 3683) 15128 35105 unique (length 19977) Creating Unitig 113239 Creating Unitig 113240 Creating Unitig 113241 For tig 406 repeat region 0 10875 - 4/ 0 reads repeat/unique - unitig 113239 created. For tig 406 unique region 10875 11445 - 0/ 4 reads repeat/unique - unitig 113240 created. For tig 406 repeat region 11445 15128 - 0/ 0 repeat/unique reads - no new unitig created. For tig 406 unique region 15128 35105 - 0/ 33 reads repeat/unique - unitig 113241 created. Annotating repeats in reads for tig 410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 411/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 4229:3618 - contained in read 357489 0- 4229 thickest edges to the repeat regions: saved region 5266:9483 - closest read 95562 ( +2024) 3242:9483 ( +0) (contained) saved region 5266:9483 - closest 5' read 95562 ( +2024) 3242:9483 ( +0) saved region 5266:9483 - closest 3' read 95562 ( +2024) 3242:9483 ( +0) saved region 17355:24224 - closest 5' read 414902 ( +344) 17011:21439 ( -2785) saved region 17355:24224 - closest 3' read 721690 ( -7) 17362:31916 ( +7692) saved region 31186:35202 - closest 5' read 483691 ( +3414) 27772:32151 ( -3051) saved region 31186:35202 - closest 3' read 258577 ( -103) 31289:38633 ( +3431) search for confused edges: tig 411 read 258577 pos 31289-38633 IS confused by 3' edge to read 171713 - best edge read 676599 len 854 erate 0.0679 score 796.01 - alt edge len 511 erate 0.0705 score 474.97 - absdiff 321.04 percdiff 50.5180 discard region 5266:9483 - no confusion in best edges discard region 17355:24224 - no confusion in best edges saved region 31186:35202 - 1 best edges are potentially confused break tig 411 into up to 3 pieces: 0 30686 unique (length 30686) 30686 35702 repeat (length 5016) 35702 45291 unique (length 9589) Creating Unitig 113242 Creating Unitig 113243 Creating Unitig 113244 For tig 411 unique region 0 30686 - 0/ 33 reads repeat/unique - unitig 113242 created. For tig 411 repeat region 30686 35702 - 11/ 0 reads repeat/unique - unitig 113243 created. For tig 411 unique region 35702 45291 - 0/ 13 reads repeat/unique - unitig 113244 created. Annotating repeats in reads for tig 422/113047. Annotated with 284 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15452:16605 - closest 5' read 390724 ( +4417) 11035:16177 ( -428) saved region 15452:16605 - closest 3' read 215123 ( -8) 15460:21166 ( +4561) saved region 20614:30015 - closest read 694841 ( +1311) 19303:30038 ( +23) (contained) saved region 20614:30015 - closest 5' read 694841 ( +1311) 19303:30038 ( +23) saved region 20614:30015 - closest 3' read 694841 ( +1311) 19303:30038 ( +23) search for confused edges: tig 422 read 215123 pos 15460-21166 IS confused by 5' edge to read 403239 - best edge read 390724 len 717 erate 0.0604 score 673.69 - alt edge len 517 erate 0.0655 score 483.14 - absdiff 190.56 percdiff 32.9446 saved region 15452:16605 - 1 best edges are potentially confused discard region 20614:30015 - no confusion in best edges break tig 422 into up to 3 pieces: 0 14952 unique (length 14952) 14952 17105 repeat (length 2153) 17105 36534 unique (length 19429) Creating Unitig 113245 Creating Unitig 113246 For tig 422 unique region 0 14952 - 0/ 27 reads repeat/unique - unitig 113245 created. For tig 422 repeat region 14952 17105 - 0/ 0 repeat/unique reads - no new unitig created. For tig 422 unique region 17105 36534 - 0/ 48 reads repeat/unique - unitig 113246 created. Annotating repeats in reads for tig 425/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 3438:6353 - contained in read 688789 1505- 6353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 428/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 13955:14652 - contained in read 634679 5676- 19095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 432/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6584:13481 - contained in read 268728 4521- 13481 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 438/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5821:14065 - closest 5' read 573498 ( +0) 5821:13461 ( -604) saved region 5821:14065 - closest 3' read 156543 ( -4902) 10723:14065 ( +0) search for confused edges: tig 438 read 57965 pos 3258-13257 NOT confused by 3' edge to read 23253 - best edge read 567629 len 7195 erate 0.0427 score 6887.77 - alt edge len 4644 erate 0.0073 score 4610.10 - absdiff 2277.67 percdiff 39.6191 tig 438 read 57965 pos 3258-13257 NOT confused by 3' edge to read 23255 - best edge read 567629 len 7195 erate 0.0427 score 6887.77 - alt edge len 4514 erate 0.0069 score 4482.85 - absdiff 2404.92 percdiff 42.3006 tig 438 read 57965 pos 3258-13257 NOT confused by 3' edge to read 276299 - best edge read 567629 len 7195 erate 0.0427 score 6887.77 - alt edge len 3408 erate 0.0067 score 3385.17 - absdiff 3502.61 percdiff 68.1909 tig 438 read 567629 pos 5838-13782 NOT confused by 3' edge to read 23253 - best edge read 366803 len 7274 erate 0.0110 score 7193.99 - alt edge len 5145 erate 0.0169 score 5058.05 - absdiff 2135.94 percdiff 34.8666 tig 438 read 567629 pos 5838-13782 NOT confused by 3' edge to read 23255 - best edge read 366803 len 7274 erate 0.0110 score 7193.99 - alt edge len 5015 erate 0.0154 score 4937.77 - absdiff 2256.22 percdiff 37.1952 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 254971 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5458 erate 0.0585 score 5138.71 - absdiff 1796.93 percdiff 29.7645 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 254972 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5449 erate 0.0602 score 5120.97 - absdiff 1814.67 percdiff 30.1025 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 254974 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5446 erate 0.0592 score 5123.60 - absdiff 1812.04 percdiff 30.0523 tig 438 read 567629 pos 5838-13782 NOT confused by 3' edge to read 276299 - best edge read 366803 len 7274 erate 0.0110 score 7193.99 - alt edge len 3908 erate 0.0171 score 3841.17 - absdiff 3352.81 percdiff 60.7660 tig 438 read 567629 pos 5838-13782 NOT confused by 5' edge to read 289351 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 4152 erate 0.0674 score 3872.16 - absdiff 3063.48 percdiff 56.6903 tig 438 read 567629 pos 5838-13782 IS confused by 5' edge to read 710523 - best edge read 57965 len 7245 erate 0.0427 score 6935.64 - alt edge len 5346 erate 0.0676 score 4984.61 - absdiff 1951.03 percdiff 32.7347 tig 438 read 366803 pos 6336-13997 NOT confused by 3' edge to read 23253 - best edge read 449978 len 7508 erate 0.0092 score 7438.93 - alt edge len 5376 erate 0.0088 score 5328.69 - absdiff 2110.24 percdiff 33.0561 tig 438 read 366803 pos 6336-13997 NOT confused by 3' edge to read 23255 - best edge read 449978 len 7508 erate 0.0092 score 7438.93 - alt edge len 5246 erate 0.0086 score 5200.88 - absdiff 2238.04 percdiff 35.4126 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 254971 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4954 erate 0.0071 score 4918.83 - absdiff 2323.62 percdiff 38.2134 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 254972 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4945 erate 0.0090 score 4900.49 - absdiff 2341.95 percdiff 38.5731 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 254974 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4942 erate 0.0077 score 4903.95 - absdiff 2338.50 percdiff 38.5053 tig 438 read 366803 pos 6336-13997 NOT confused by 3' edge to read 276299 - best edge read 449978 len 7508 erate 0.0092 score 7438.93 - alt edge len 4141 erate 0.0097 score 4100.83 - absdiff 3338.09 percdiff 57.8538 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 289351 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 3649 erate 0.0041 score 3634.04 - absdiff 3608.41 percdiff 66.3525 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 418160 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 2188 erate 0.0161 score 2152.77 - absdiff 5089.67 percdiff 108.3460 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 418161 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 2220 erate 0.0113 score 2194.91 - absdiff 5047.53 percdiff 106.9692 tig 438 read 366803 pos 6336-13997 NOT confused by 5' edge to read 710523 - best edge read 567629 len 7323 erate 0.0110 score 7242.45 - alt edge len 4843 erate 0.0139 score 4775.68 - absdiff 2466.76 percdiff 41.0507 tig 438 read 449978 pos 6344-14004 IS confused by 5' edge to read 23253 - best edge read 698064 len 7400 erate 0.0057 score 7357.82 - alt edge len 5373 erate 0.0134 score 5301.00 - absdiff 2056.82 percdiff 32.4962 tig 438 read 449978 pos 6344-14004 NOT confused by 5' edge to read 23255 - best edge read 698064 len 7400 erate 0.0057 score 7357.82 - alt edge len 5243 erate 0.0120 score 5180.08 - absdiff 2177.74 percdiff 34.7384 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 254971 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4943 erate 0.0085 score 4900.98 - absdiff 2511.19 percdiff 40.7887 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 254972 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4934 erate 0.0114 score 4877.75 - absdiff 2534.42 percdiff 41.2439 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 254974 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4931 erate 0.0092 score 4885.63 - absdiff 2526.54 percdiff 41.0893 tig 438 read 449978 pos 6344-14004 NOT confused by 5' edge to read 276299 - best edge read 698064 len 7400 erate 0.0057 score 7357.82 - alt edge len 4140 erate 0.0121 score 4089.91 - absdiff 3267.91 percdiff 57.0928 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 289351 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 3637 erate 0.0071 score 3611.18 - absdiff 3801.00 percdiff 68.9626 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 418160 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 2181 erate 0.0184 score 2140.87 - absdiff 5271.31 percdiff 110.3586 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 418161 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 2213 erate 0.0136 score 2182.90 - absdiff 5229.27 percdiff 108.9990 tig 438 read 449978 pos 6344-14004 NOT confused by 3' edge to read 710523 - best edge read 366803 len 7481 erate 0.0092 score 7412.17 - alt edge len 4832 erate 0.0164 score 4752.76 - absdiff 2659.42 percdiff 43.7227 tig 438 read 698064 pos 6439-14018 IS confused by 5' edge to read 23253 - best edge read 174419 len 7049 erate 0.0024 score 7032.08 - alt edge len 5394 erate 0.0089 score 5345.99 - absdiff 1686.09 percdiff 27.2432 tig 438 read 698064 pos 6439-14018 IS confused by 5' edge to read 23255 - best edge read 174419 len 7049 erate 0.0024 score 7032.08 - alt edge len 5264 erate 0.0082 score 5220.84 - absdiff 1811.25 percdiff 29.5643 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 254971 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4854 erate 0.0068 score 4820.99 - absdiff 2561.68 percdiff 41.9822 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 254972 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4845 erate 0.0093 score 4799.94 - absdiff 2582.74 percdiff 42.4003 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 254974 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4842 erate 0.0079 score 4803.75 - absdiff 2578.93 percdiff 42.3246 tig 438 read 698064 pos 6439-14018 NOT confused by 5' edge to read 276299 - best edge read 174419 len 7049 erate 0.0024 score 7032.08 - alt edge len 4159 erate 0.0075 score 4127.81 - absdiff 2904.27 percdiff 52.0485 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 289351 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 3548 erate 0.0042 score 3533.10 - absdiff 3849.58 percdiff 70.5324 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 418160 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 2088 erate 0.0159 score 2054.80 - absdiff 5327.88 percdiff 112.9089 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 418161 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 2120 erate 0.0109 score 2096.89 - absdiff 5285.79 percdiff 111.5195 tig 438 read 698064 pos 6439-14018 NOT confused by 3' edge to read 710523 - best edge read 449978 len 7425 erate 0.0057 score 7382.68 - alt edge len 4742 erate 0.0134 score 4678.46 - absdiff 2704.22 percdiff 44.8419 tig 438 read 174419 pos 6822-14020 IS confused by 5' edge to read 23253 - best edge read 151656 len 6087 erate 0.0144 score 5999.35 - alt edge len 5396 erate 0.0098 score 5343.12 - absdiff 656.23 percdiff 11.5712 tig 438 read 174419 pos 6822-14020 IS confused by 5' edge to read 23255 - best edge read 151656 len 6087 erate 0.0144 score 5999.35 - alt edge len 5266 erate 0.0086 score 5220.71 - absdiff 778.63 percdiff 13.8793 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 254971 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4478 erate 0.0063 score 4449.79 - absdiff 2582.29 percdiff 44.9804 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 254972 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4469 erate 0.0092 score 4427.89 - absdiff 2604.20 percdiff 45.4486 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 254974 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4466 erate 0.0070 score 4434.74 - absdiff 2597.34 percdiff 45.3019 tig 438 read 174419 pos 6822-14020 IS confused by 5' edge to read 276299 - best edge read 151656 len 6087 erate 0.0144 score 5999.35 - alt edge len 4159 erate 0.0080 score 4125.73 - absdiff 1873.62 percdiff 37.0095 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 289351 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 3173 erate 0.0038 score 3160.94 - absdiff 3871.14 percdiff 75.9566 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 418160 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 1711 erate 0.0165 score 1682.77 - absdiff 5349.31 percdiff 122.7632 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 418161 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 1743 erate 0.0104 score 1724.87 - absdiff 5307.21 percdiff 121.2113 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 663588 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 1696 erate 0.0476 score 1615.27 - absdiff 5416.81 percdiff 125.2825 tig 438 read 174419 pos 6822-14020 NOT confused by 3' edge to read 710523 - best edge read 698064 len 7049 erate 0.0024 score 7032.08 - alt edge len 4367 erate 0.0141 score 4305.43 - absdiff 2726.66 percdiff 48.0998 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 254971 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3499 erate 0.0241 score 3414.67 - absdiff 2562.99 percdiff 54.5762 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 254972 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3490 erate 0.0265 score 3397.52 - absdiff 2580.15 percdiff 55.0421 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 254974 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3487 erate 0.0259 score 3396.69 - absdiff 2580.98 percdiff 55.0647 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 289351 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 2201 erate 0.0178 score 2161.82 - absdiff 3815.84 percdiff 93.7612 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 418160 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 746 erate 0.0474 score 710.64 - absdiff 5267.02 percdiff 157.4996 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 418161 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 778 erate 0.0429 score 744.62 - absdiff 5233.04 percdiff 155.6922 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 663588 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 732 erate 0.0661 score 683.61 - absdiff 5294.05 percdiff 158.9499 tig 438 read 151656 pos 7811-14019 NOT confused by 5' edge to read 710523 - best edge read 174419 len 6065 erate 0.0144 score 5977.66 - alt edge len 3391 erate 0.0317 score 3283.51 - absdiff 2694.16 percdiff 58.1818 saved region 5821:14065 - 10 best edges are potentially confused break tig 438 into up to 3 pieces: 0 5321 unique (length 5321) 5321 14565 repeat (length 9244) 14565 31410 unique (length 16845) Creating Unitig 113247 Creating Unitig 113248 Creating Unitig 113249 For tig 438 unique region 0 5321 - 0/ 7 reads repeat/unique - unitig 113247 created. For tig 438 repeat region 5321 14565 - 96/ 0 reads repeat/unique - unitig 113248 created. For tig 438 unique region 14565 31410 - 0/ 18 reads repeat/unique - unitig 113249 created. Annotating repeats in reads for tig 442/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 12954:13784 - contained in read 98185 8917- 17056 discard region 14215:14928 - contained in read 98185 8917- 17056 discard region 18803:20172 - contained in read 523371 10621- 20757 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 454/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 6637:5942 - contained in read 565065 4335- 12393 discard region 7210:18149 - contained in read 102864 5942- 18975 discard region 20061:23751 - contained in read 124905 12058- 25493 discard region 38462:39684 - contained in read 178038 22527- 42117 discard region 41004:42300 - contained in read 564889 37388- 46186 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 459/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 8021:6724 - contained in read 684689 0- 7530 discard region 41793:47549 - contained in read 30247 38982- 48336 thickest edges to the repeat regions: saved region 17398:18010 - closest read 683099 ( +5630) 11768:18036 ( +26) (contained) saved region 17398:18010 - closest read 717931 ( +0) 17398:23866 ( +5856) (contained) saved region 17398:18010 - closest 5' read 717931 ( +0) 17398:23866 ( +5856) saved region 17398:18010 - closest 3' read 683099 ( +5630) 11768:18036 ( +26) search for confused edges: discard region 17398:18010 - no confusion in best edges Annotating repeats in reads for tig 461/113047. Annotated with 334 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9350 - closest 5' read 339278 ( +0) 0:5001 ( -4349) saved region 0:9350 - closest 3' read 706969 ( -1501) 1501:13578 ( +4228) search for confused edges: tig 461 read 706969 pos 1501-13578 IS confused by 5' edge to read 250405 - best edge read 327420 len 6389 erate 0.0664 score 5964.77 - alt edge len 4794 erate 0.0725 score 4446.44 - absdiff 1518.34 percdiff 29.1673 tig 461 read 706969 pos 1501-13578 IS confused by 5' edge to read 574860 - best edge read 327420 len 6389 erate 0.0664 score 5964.77 - alt edge len 5870 erate 0.0625 score 5503.12 - absdiff 461.65 percdiff 8.0511 tig 461 read 706969 pos 1501-13578 NOT confused by 5' edge to read 653348 - best edge read 327420 len 6389 erate 0.0664 score 5964.77 - alt edge len 3322 erate 0.0664 score 3101.42 - absdiff 2863.35 percdiff 63.1655 saved region 0:9350 - 2 best edges are potentially confused break tig 461 into up to 2 pieces: 0 9850 repeat (length 9850) 9850 13618 unique (length 3768) Creating Unitig 113250 Creating Unitig 113251 For tig 461 repeat region 0 9850 - 16/ 0 reads repeat/unique - unitig 113250 created. For tig 461 unique region 9850 13618 - 0/ 8 reads repeat/unique - unitig 113251 created. Annotating repeats in reads for tig 466/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13227:13864 - contained in read 439233 8340- 14997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 469/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9168:6547 - contained in read 17406 0- 7134 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 471/113047. Annotated with 540 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1164:21508 - closest 5' read 28604 ( +1164) 0:16899 ( -4609) saved region 1164:21508 - closest 3' read 28603 ( -3467) 4631:21508 ( +0) search for confused edges: discard region 1164:21508 - no confusion in best edges Annotating repeats in reads for tig 474/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 10899:15185 - contained in read 232150 10199- 16082 thickest edges to the repeat regions: saved region 4899:9057 - closest 5' read 412488 ( +2161) 2738:7354 ( -1703) saved region 4899:9057 - closest 3' read 216033 ( -1848) 6747:15105 ( +6048) search for confused edges: discard region 4899:9057 - no confusion in best edges Annotating repeats in reads for tig 477/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6437:12134 - closest read 150420 ( +0) 6437:12324 ( +190) (contained) saved region 6437:12134 - closest 5' read 150420 ( +0) 6437:12324 ( +190) saved region 6437:12134 - closest 3' read 150420 ( +0) 6437:12324 ( +190) search for confused edges: tig 477 read 67516 pos 5469-11849 NOT confused by 5' edge to read 360909 - best edge read 580642 len 5311 erate 0.0307 score 5147.95 - alt edge len 2169 erate 0.0320 score 2099.59 - absdiff 3048.36 percdiff 84.1212 tig 477 read 67516 pos 5469-11849 NOT confused by 5' edge to read 360910 - best edge read 580642 len 5311 erate 0.0307 score 5147.95 - alt edge len 2138 erate 0.0303 score 2073.22 - absdiff 3074.73 percdiff 85.1589 tig 477 read 580642 pos 6445-12428 NOT confused by 5' edge to read 146784 - best edge read 67516 len 5314 erate 0.0284 score 5163.08 - alt edge len 2898 erate 0.0121 score 2862.93 - absdiff 2300.15 percdiff 57.3173 tig 477 read 580642 pos 6445-12428 NOT confused by 5' edge to read 358123 - best edge read 67516 len 5314 erate 0.0284 score 5163.08 - alt edge len 2885 erate 0.0669 score 2691.99 - absdiff 2471.09 percdiff 62.9170 tig 477 read 580642 pos 6445-12428 IS confused by 5' edge to read 547555 - best edge read 67516 len 5314 erate 0.0284 score 5163.08 - alt edge len 3538 erate 0.0249 score 3449.90 - absdiff 1713.18 percdiff 39.7813 saved region 6437:12134 - 1 best edges are potentially confused break tig 477 into up to 3 pieces: 0 5937 unique (length 5937) 5937 12634 repeat (length 6697) 12634 15700 unique (length 3066) Creating Unitig 113252 Creating Unitig 113253 Creating Unitig 113254 For tig 477 unique region 0 5937 - 0/ 11 reads repeat/unique - unitig 113252 created. For tig 477 repeat region 5937 12634 - 19/ 0 reads repeat/unique - unitig 113253 created. For tig 477 unique region 12634 15700 - 0/ 4 reads repeat/unique - unitig 113254 created. Annotating repeats in reads for tig 478/113047. Annotated with 117 overlaps. Scan reads to discard spanned repeats. discard region 0:2259 - contained in read 496546 0- 9539 discard region 9444:12971 - contained in read 108011 6492- 13566 thickest edges to the repeat regions: saved region 16264:19797 - closest read 87332 ( +2587) 13677:20092 ( +295) (contained) saved region 16264:19797 - closest 5' read 87332 ( +2587) 13677:20092 ( +295) saved region 16264:19797 - closest 3' read 87332 ( +2587) 13677:20092 ( +295) saved region 23721:26525 - closest read 411755 ( +0) 23721:29583 ( +3058) (contained) saved region 23721:26525 - closest 5' read 411755 ( +0) 23721:29583 ( +3058) saved region 23721:26525 - closest 3' read 411755 ( +0) 23721:29583 ( +3058) saved region 28711:30004 - closest 5' read 411755 ( +4990) 23721:29583 ( -421) saved region 28711:30004 - closest 3' read 606735 ( -57) 28768:36307 ( +6303) search for confused edges: discard region 16264:19797 - no confusion in best edges discard region 23721:26525 - no confusion in best edges discard region 28711:30004 - no confusion in best edges Annotating repeats in reads for tig 479/113047. Annotated with 185 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12461:16904 - closest read 520263 ( +1597) 10864:16904 ( +0) (contained) saved region 12461:16904 - closest 5' read 520263 ( +1597) 10864:16904 ( +0) saved region 12461:16904 - closest 3' read 520263 ( +1597) 10864:16904 ( +0) saved region 21771:31113 - closest 5' read 568959 ( +523) 21248:27495 ( -3618) saved region 21771:31113 - closest 3' read 661474 ( -646) 22417:34540 ( +3427) search for confused edges: tig 479 read 582819 pos 12465-18180 NOT confused by 3' edge to read 47237 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 691 erate 0.0391 score 663.98 - absdiff 3684.61 percdiff 147.0147 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 118357 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2563 erate 0.0560 score 2419.47 - absdiff 1929.12 percdiff 57.0066 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 118358 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2542 erate 0.0423 score 2434.47 - absdiff 1914.12 percdiff 56.4382 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 388130 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 4288 erate 0.0694 score 3990.41 - absdiff 358.18 percdiff 8.5905 tig 479 read 582819 pos 12465-18180 NOT confused by 3' edge to read 623947 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 696 erate 0.0547 score 657.93 - absdiff 3690.67 percdiff 147.4343 tig 479 read 582819 pos 12465-18180 NOT confused by 3' edge to read 635630 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 692 erate 0.0666 score 645.91 - absdiff 3702.68 percdiff 148.2702 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 708594 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2940 erate 0.0562 score 2774.77 - absdiff 1573.82 percdiff 44.1876 tig 479 read 582819 pos 12465-18180 IS confused by 3' edge to read 708595 - best edge read 520263 len 4422 erate 0.0166 score 4348.59 - alt edge len 2948 erate 0.0637 score 2760.21 - absdiff 1588.38 percdiff 44.6877 tig 479 read 469811 pos 17609-26575 IS confused by 3' edge to read 465571 - best edge read 661474 len 4112 erate 0.0151 score 4049.91 - alt edge len 2104 erate 0.0076 score 2088.01 - absdiff 1961.90 percdiff 63.9272 tig 479 read 469811 pos 17609-26575 IS confused by 3' edge to read 669962 - best edge read 661474 len 4112 erate 0.0151 score 4049.91 - alt edge len 3837 erate 0.0102 score 3797.86 - absdiff 252.05 percdiff 6.4234 saved region 12461:16904 - 5 best edges are potentially confused saved region 21771:31113 - 2 best edges are potentially confused break tig 479 into up to 5 pieces: 0 11961 unique (length 11961) 11961 17404 repeat (length 5443) 17404 21271 unique (length 3867) 21271 31613 repeat (length 10342) 31613 36300 unique (length 4687) Creating Unitig 113255 Creating Unitig 113256 Creating Unitig 113257 Creating Unitig 113258 For tig 479 unique region 0 11961 - 0/ 19 reads repeat/unique - unitig 113255 created. For tig 479 repeat region 11961 17404 - 0/ 0 repeat/unique reads - no new unitig created. For tig 479 unique region 17404 21271 - 0/ 14 reads repeat/unique - unitig 113256 created. For tig 479 repeat region 21271 31613 - 19/ 0 reads repeat/unique - unitig 113257 created. For tig 479 unique region 31613 36300 - 0/ 7 reads repeat/unique - unitig 113258 created. Annotating repeats in reads for tig 480/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5934:10535 - closest read 38615 ( +1069) 4865:10535 ( +0) (contained) saved region 5934:10535 - closest 5' read 38615 ( +1069) 4865:10535 ( +0) saved region 5934:10535 - closest 3' read 38615 ( +1069) 4865:10535 ( +0) saved region 16750:19428 - closest read 365284 ( +482) 16268:19437 ( +9) (contained) saved region 16750:19428 - closest 5' read 365284 ( +482) 16268:19437 ( +9) saved region 16750:19428 - closest 3' read 365284 ( +482) 16268:19437 ( +9) search for confused edges: discard region 5934:10535 - no confusion in best edges discard region 16750:19428 - no confusion in best edges Annotating repeats in reads for tig 481/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13759:16448 - closest read 266653 ( +0) 13759:21987 ( +5539) (contained) saved region 13759:16448 - closest 5' read 266653 ( +0) 13759:21987 ( +5539) saved region 13759:16448 - closest 3' read 266653 ( +0) 13759:21987 ( +5539) search for confused edges: discard region 13759:16448 - no confusion in best edges Annotating repeats in reads for tig 482/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 32634:34380 - contained in read 68649 30595- 35993 thickest edges to the repeat regions: saved region 30577:31182 - closest read 706235 (+11402) 19175:31182 ( +0) (contained) saved region 30577:31182 - closest 5' read 706235 (+11402) 19175:31182 ( +0) saved region 30577:31182 - closest 3' read 706235 (+11402) 19175:31182 ( +0) search for confused edges: discard region 30577:31182 - no confusion in best edges Annotating repeats in reads for tig 484/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 14174:15206 - contained in read 668263 10460- 17138 thickest edges to the repeat regions: saved region 7353:8161 - closest read 46816 ( +7317) 36:8161 ( +0) (contained) saved region 7353:8161 - closest 5' read 46816 ( +7317) 36:8161 ( +0) saved region 7353:8161 - closest 3' read 46816 ( +7317) 36:8161 ( +0) saved region 15422:23242 - closest 5' read 76319 ( +4401) 11021:20894 ( -2348) saved region 15422:23242 - closest 3' read 262164 ( -3072) 18494:23518 ( +276) search for confused edges: tig 484 read 76320 pos 11014-20886 NOT confused by 3' edge to read 188286 - best edge read 511841 len 4501 erate 0.0082 score 4464.09 - alt edge len 645 erate 0.0187 score 632.94 - absdiff 3831.15 percdiff 150.3288 tig 484 read 511841 pos 16349-22033 IS confused by 3' edge to read 188286 - best edge read 262164 len 3500 erate 0.0329 score 3384.85 - alt edge len 1778 erate 0.0174 score 1747.06 - absdiff 1637.79 percdiff 63.8276 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 217657 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 2994 erate 0.0393 score 2876.34 - absdiff 527.86 percdiff 16.8093 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 217658 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 2981 erate 0.0371 score 2870.40 - absdiff 533.79 percdiff 17.0142 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 217661 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 2979 erate 0.0379 score 2866.10 - absdiff 538.10 percdiff 17.1634 tig 484 read 262164 pos 18494-23518 IS confused by 3' edge to read 329998 - best edge read 511841 len 3520 erate 0.0329 score 3404.19 - alt edge len 1805 erate 0.0236 score 1762.40 - absdiff 1641.79 percdiff 63.5541 discard region 7353:8161 - no confusion in best edges saved region 15422:23242 - 5 best edges are potentially confused break tig 484 into up to 3 pieces: 0 14922 unique (length 14922) 14922 23742 repeat (length 8820) 23742 26516 unique (length 2774) Creating Unitig 113259 Creating Unitig 113260 Creating Unitig 113261 For tig 484 unique region 0 14922 - 0/ 21 reads repeat/unique - unitig 113259 created. For tig 484 repeat region 14922 23742 - 8/ 0 reads repeat/unique - unitig 113260 created. For tig 484 unique region 23742 26516 - 0/ 5 reads repeat/unique - unitig 113261 created. Annotating repeats in reads for tig 485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 487/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 725:0 - contained in read 487199 0- 9357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 488/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 490/113047. Annotated with 119 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2699:8215 - closest 5' read 161529 ( +2697) 2:6179 ( -2036) saved region 2699:8215 - closest 3' read 95146 ( -487) 3186:8613 ( +398) search for confused edges: tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 66229 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 2338 erate 0.0419 score 2240.04 - absdiff 497.69 percdiff 19.9965 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 66230 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 2498 erate 0.0440 score 2388.09 - absdiff 349.64 percdiff 13.6423 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 98585 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 1783 erate 0.0589 score 1677.98 - absdiff 1059.75 percdiff 47.9989 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 98586 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 1782 erate 0.0596 score 1675.79 - absdiff 1061.94 percdiff 48.1219 tig 490 read 95147 pos 3188-9030 IS confused by 5' edge to read 651902 - best edge read 161529 len 2940 erate 0.0688 score 2737.73 - alt edge len 2597 erate 0.0499 score 2467.41 - absdiff 270.32 percdiff 10.3866 saved region 2699:8215 - 5 best edges are potentially confused break tig 490 into up to 3 pieces: 0 2199 unique (length 2199) 2199 8715 repeat (length 6516) 8715 9439 unique (length 724) Creating Unitig 113262 Creating Unitig 113263 Creating Unitig 113264 For tig 490 unique region 0 2199 - 0/ 2 reads repeat/unique - unitig 113262 created. For tig 490 repeat region 2199 8715 - 11/ 0 reads repeat/unique - unitig 113263 created. For tig 490 unique region 8715 9439 - 0/ 4 reads repeat/unique - unitig 113264 created. Annotating repeats in reads for tig 492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 494/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 28541:27949 - contained in read 422920 19516- 29500 thickest edges to the repeat regions: saved region 14303:19861 - closest 5' read 518324 ( +7200) 7103:17465 ( -2396) saved region 14303:19861 - closest 3' read 165943 ( -988) 15291:23260 ( +3399) search for confused edges: discard region 14303:19861 - no confusion in best edges Annotating repeats in reads for tig 496/113047. Annotated with 996 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14968 - closest 5' read 615028 ( +0) 0:10795 ( -4173) saved region 0:14968 - closest 3' read 122819 ( -752) 752:14968 ( +0) search for confused edges: discard region 0:14968 - no confusion in best edges Annotating repeats in reads for tig 497/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5042:8539 - closest read 499822 ( +312) 4730:12638 ( +4099) (contained) saved region 5042:8539 - closest 5' read 499822 ( +312) 4730:12638 ( +4099) saved region 5042:8539 - closest 3' read 499822 ( +312) 4730:12638 ( +4099) search for confused edges: discard region 5042:8539 - no confusion in best edges Annotating repeats in reads for tig 499/113047. Annotated with 484 overlaps. Scan reads to discard spanned repeats. discard region 23786:23179 - contained in read 682170 16254- 23776 discard region 34312:35851 - contained in read 144248 31181- 36704 thickest edges to the repeat regions: saved region 16254:23064 - closest read 682170 ( +0) 16254:23776 ( +712) (contained) saved region 16254:23064 - closest 5' read 682170 ( +0) 16254:23776 ( +712) saved region 16254:23064 - closest 3' read 682170 ( +0) 16254:23776 ( +712) saved region 24148:27007 - closest 5' read 538894 ( +5476) 18672:26927 ( -80) saved region 24148:27007 - closest 3' read 714611 ( -1206) 25354:31668 ( +4661) search for confused edges: tig 499 read 538894 pos 18672-26927 IS confused by 5' edge to read 57749 - best edge read 698726 len 934 erate 0.0289 score 907.01 - alt edge len 814 erate 0.0283 score 790.96 - absdiff 116.04 percdiff 13.6685 tig 499 read 538894 pos 18672-26927 IS confused by 5' edge to read 154912 - best edge read 698726 len 934 erate 0.0289 score 907.01 - alt edge len 831 erate 0.0529 score 787.04 - absdiff 119.97 percdiff 14.1634 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 20376 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 932 erate 0.0358 score 898.63 - absdiff 534.78 percdiff 45.8637 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 20379 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 934 erate 0.0302 score 905.79 - absdiff 527.62 percdiff 45.1112 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 214721 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 1505 erate 0.0281 score 1462.71 - absdiff 29.29 percdiff 2.0229 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 434131 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 1503 erate 0.0452 score 1435.06 - absdiff 1.65 percdiff 0.1149 tig 499 read 714610 pos 25402-31671 IS confused by 5' edge to read 581053 - best edge read 538894 len 1513 erate 0.0526 score 1433.42 - alt edge len 1505 erate 0.0306 score 1458.95 - absdiff 25.53 percdiff 1.7654 saved region 16254:23064 - 2 best edges are potentially confused saved region 24148:27007 - 5 best edges are potentially confused break tig 499 into up to 5 pieces: 0 15754 unique (length 15754) 15754 23564 repeat (length 7810) 23564 23648 unique (length 84) 23648 27507 repeat (length 3859) 27507 41144 unique (length 13637) Creating Unitig 113265 Creating Unitig 113266 Creating Unitig 113267 Creating Unitig 113268 For tig 499 unique region 0 15754 - 0/ 9 reads repeat/unique - unitig 113265 created. For tig 499 repeat region 15754 23564 - 5/ 0 reads repeat/unique - unitig 113267 created. For tig 499 unique region 23564 23648 - 0/ 8 reads repeat/unique - unitig 113266 created. For tig 499 repeat region 23648 27507 - 0/ 0 repeat/unique reads - no new unitig created. For tig 499 unique region 27507 41144 - 0/ 56 reads repeat/unique - unitig 113268 created. Annotating repeats in reads for tig 500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 502/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 0:954 - contained in read 72406 0- 5161 thickest edges to the repeat regions: saved region 3715:11840 - closest 5' read 409380 ( +2122) 1593:10627 ( -1213) saved region 3715:11840 - closest 3' read 42225 ( -2818) 6533:14634 ( +2794) saved region 25060:26207 - closest read 479900 ( +7216) 17844:26207 ( +0) (contained) saved region 25060:26207 - closest read 239879 ( +5917) 19143:26213 ( +6) (contained) saved region 25060:26207 - closest 5' read 239879 ( +5917) 19143:26213 ( +6) saved region 25060:26207 - closest 3' read 479900 ( +7216) 17844:26207 ( +0) search for confused edges: tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 49993 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 3511 erate 0.0100 score 3475.89 - absdiff 2466.23 percdiff 52.3727 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 80164 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 808 erate 0.0223 score 789.98 - absdiff 5152.14 percdiff 153.0618 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 80166 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 2614 erate 0.0227 score 2554.66 - absdiff 3387.46 percdiff 79.7351 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 144058 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 2884 erate 0.0397 score 2769.51 - absdiff 3172.62 percdiff 72.8364 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 313468 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 2659 erate 0.0420 score 2547.32 - absdiff 3394.80 percdiff 79.9770 tig 502 read 409380 pos 1593-10627 NOT confused by 3' edge to read 348390 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 3848 erate 0.0094 score 3811.83 - absdiff 2130.30 percdiff 43.6807 tig 502 read 409380 pos 1593-10627 IS confused by 3' edge to read 620578 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 4896 erate 0.0248 score 4774.58 - absdiff 1167.55 percdiff 21.7893 tig 502 read 409380 pos 1593-10627 IS confused by 3' edge to read 620580 - best edge read 579291 len 6021 erate 0.0131 score 5942.12 - alt edge len 4903 erate 0.0205 score 4802.49 - absdiff 1139.64 percdiff 21.2132 tig 502 read 579291 pos 4571-11823 IS confused by 5' edge to read 44331 - best edge read 409380 len 6043 erate 0.0131 score 5963.84 - alt edge len 5882 erate 0.0123 score 5809.65 - absdiff 154.19 percdiff 2.6192 tig 502 read 579291 pos 4571-11823 IS confused by 5' edge to read 643528 - best edge read 409380 len 6043 erate 0.0131 score 5963.84 - alt edge len 5829 erate 0.0137 score 5749.14 - absdiff 214.69 percdiff 3.6659 tig 502 read 42224 pos 6556-14635 IS confused by 5' edge to read 44331 - best edge read 579291 len 5232 erate 0.0094 score 5182.82 - alt edge len 3894 erate 0.0103 score 3853.89 - absdiff 1328.93 percdiff 29.4117 tig 502 read 42224 pos 6556-14635 IS confused by 5' edge to read 643528 - best edge read 579291 len 5232 erate 0.0094 score 5182.82 - alt edge len 3841 erate 0.0138 score 3787.99 - absdiff 1394.82 percdiff 31.0970 tig 502 read 42224 pos 6556-14635 IS confused by 5' edge to read 720885 - best edge read 579291 len 5232 erate 0.0094 score 5182.82 - alt edge len 3590 erate 0.0326 score 3472.97 - absdiff 1709.85 percdiff 39.5078 tig 502 read 592069 pos 25070-30402 IS confused by 5' edge to read 695734 - best edge read 479900 len 1125 erate 0.0693 score 1047.04 - alt edge len 1061 erate 0.0312 score 1027.90 - absdiff 19.14 percdiff 1.8449 saved region 3715:11840 - 7 best edges are potentially confused saved region 25060:26207 - 1 best edges are potentially confused break tig 502 into up to 5 pieces: 0 3215 unique (length 3215) 3215 12340 repeat (length 9125) 12340 24560 unique (length 12220) 24560 26707 repeat (length 2147) 26707 32777 unique (length 6070) Creating Unitig 113269 Creating Unitig 113270 Creating Unitig 113271 Creating Unitig 113272 For tig 502 unique region 0 3215 - 0/ 6 reads repeat/unique - unitig 113269 created. For tig 502 repeat region 3215 12340 - 16/ 0 reads repeat/unique - unitig 113270 created. For tig 502 unique region 12340 24560 - 0/ 23 reads repeat/unique - unitig 113271 created. For tig 502 repeat region 24560 26707 - 0/ 0 repeat/unique reads - no new unitig created. For tig 502 unique region 26707 32777 - 0/ 8 reads repeat/unique - unitig 113272 created. Annotating repeats in reads for tig 505/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 11273:12159 - contained in read 86815 3936- 16490 thickest edges to the repeat regions: saved region 15248:17943 - closest 5' read 193715 ( +5500) 9748:16758 ( -1185) saved region 15248:17943 - closest 3' read 331861 ( -11) 15259:22192 ( +4249) saved region 21499:22198 - closest read 686902 ( +0) 21499:28097 ( +5899) (contained) saved region 21499:22198 - closest 5' read 686902 ( +0) 21499:28097 ( +5899) saved region 21499:22198 - closest 3' read 686902 ( +0) 21499:28097 ( +5899) search for confused edges: tig 505 read 193714 pos 9760-16621 IS confused by 5' edge to read 241451 - best edge read 331857 len 1349 erate 0.0442 score 1289.37 - alt edge len 1041 erate 0.0418 score 997.49 - absdiff 291.89 percdiff 25.5274 saved region 15248:17943 - 1 best edges are potentially confused discard region 21499:22198 - no confusion in best edges break tig 505 into up to 3 pieces: 0 14748 unique (length 14748) 14748 18443 repeat (length 3695) 18443 35412 unique (length 16969) Creating Unitig 113273 Creating Unitig 113274 For tig 505 unique region 0 14748 - 0/ 22 reads repeat/unique - unitig 113273 created. For tig 505 repeat region 14748 18443 - 0/ 0 repeat/unique reads - no new unitig created. For tig 505 unique region 18443 35412 - 0/ 22 reads repeat/unique - unitig 113274 created. Annotating repeats in reads for tig 506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 514/113047. Annotated with 128 overlaps. Scan reads to discard spanned repeats. discard region 0:3271 - contained in read 624657 0- 7598 discard region 6721:13030 - contained in read 190346 5668- 13030 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 515/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 517/113047. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 1504:4941 - contained in read 515208 0- 6573 thickest edges to the repeat regions: saved region 5586:6957 - closest 5' read 515212 ( +5392) 194:6754 ( -203) saved region 5586:6957 - closest 3' read 93951 ( -483) 6069:13660 ( +6703) saved region 33091:37339 - closest read 314496 ( +6037) 27054:37516 ( +177) (contained) saved region 33091:37339 - closest read 670474 ( +1330) 31761:37637 ( +298) (contained) saved region 33091:37339 - closest read 670476 ( +1330) 31761:37486 ( +147) (contained) saved region 33091:37339 - closest read 670473 ( +1253) 31838:37603 ( +264) (contained) saved region 33091:37339 - closest 5' read 670474 ( +1330) 31761:37637 ( +298) saved region 33091:37339 - closest 3' read 314496 ( +6037) 27054:37516 ( +177) search for confused edges: discard region 5586:6957 - no confusion in best edges discard region 33091:37339 - no confusion in best edges Annotating repeats in reads for tig 520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 522/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4411:4965 - contained in read 310760 0- 12394 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 538/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7472:11157 - closest read 575148 ( +375) 7097:15015 ( +3858) (contained) saved region 7472:11157 - closest read 162426 ( +82) 7390:13617 ( +2460) (contained) saved region 7472:11157 - closest 5' read 575148 ( +375) 7097:15015 ( +3858) saved region 7472:11157 - closest 3' read 575148 ( +375) 7097:15015 ( +3858) search for confused edges: discard region 7472:11157 - no confusion in best edges Annotating repeats in reads for tig 539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 542/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2833:3449 - contained in read 50535 59- 7216 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 543/113047. Annotated with 166 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 32315:36377 - closest 5' read 17173 ( +8150) 24165:33315 ( -3062) saved region 32315:36377 - closest 3' read 234109 ( -237) 32552:39918 ( +3541) search for confused edges: discard region 32315:36377 - no confusion in best edges Annotating repeats in reads for tig 545/113047. Annotated with 179 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1511:10032 - closest read 367893 ( +873) 638:10032 ( +0) (contained) saved region 1511:10032 - closest 5' read 367893 ( +873) 638:10032 ( +0) saved region 1511:10032 - closest 3' read 367893 ( +873) 638:10032 ( +0) saved region 26336:27665 - closest read 444127 ( +6168) 20168:27665 ( +0) (contained) saved region 26336:27665 - closest read 444131 ( +5396) 20940:27667 ( +2) (contained) saved region 26336:27665 - closest 5' read 444131 ( +5396) 20940:27667 ( +2) saved region 26336:27665 - closest 3' read 444127 ( +6168) 20168:27665 ( +0) saved region 31175:37376 - closest 5' read 722901 ( +0) 31175:36702 ( -674) saved region 31175:37376 - closest 3' read 131150 ( -3) 31178:43241 ( +5865) search for confused edges: tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 423973 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 749 erate 0.0534 score 709.00 - absdiff 6917.92 percdiff 165.9784 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 423974 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 747 erate 0.0473 score 711.67 - absdiff 6915.26 percdiff 165.8615 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 423976 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 750 erate 0.0467 score 714.98 - absdiff 6911.95 percdiff 165.7164 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 429605 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 857 erate 0.0385 score 824.01 - absdiff 6802.92 percdiff 160.9981 tig 545 read 367893 pos 638-10032 NOT confused by 3' edge to read 467258 - best edge read 429253 len 7862 erate 0.0299 score 7626.93 - alt edge len 950 erate 0.0619 score 891.20 - absdiff 6735.73 percdiff 158.1506 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 114407 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 1261 erate 0.0342 score 1217.87 - absdiff 5367.95 percdiff 137.5745 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 114408 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 1263 erate 0.0538 score 1195.05 - absdiff 5390.77 percdiff 138.5647 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 423973 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 767 erate 0.0404 score 736.01 - absdiff 5849.81 percdiff 159.7908 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 423974 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 765 erate 0.0356 score 737.77 - absdiff 5848.05 percdiff 159.7047 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 423976 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 768 erate 0.0339 score 741.96 - absdiff 5843.86 percdiff 159.4985 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 429605 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 875 erate 0.0229 score 854.96 - absdiff 5730.86 percdiff 154.0391 tig 545 read 393176 pos 1846-13190 NOT confused by 3' edge to read 467258 - best edge read 429253 len 6651 erate 0.0098 score 6585.82 - alt edge len 970 erate 0.0423 score 928.97 - absdiff 5656.85 percdiff 150.5525 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 178831 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 2057 erate 0.0185 score 2018.95 - absdiff 3397.92 percdiff 91.3934 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 178832 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 2629 erate 0.0252 score 2562.75 - absdiff 2854.12 percdiff 71.5352 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 338793 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 1134 erate 0.0413 score 1087.17 - absdiff 4329.70 percdiff 133.1390 tig 545 read 131150 pos 31178-43241 NOT confused by 3' edge to read 412760 - best edge read 722900 len 5460 erate 0.0079 score 5416.87 - alt edge len 3131 erate 0.0351 score 3021.10 - absdiff 2395.76 percdiff 56.7853 discard region 1511:10032 - no confusion in best edges discard region 26336:27665 - no confusion in best edges discard region 31175:37376 - no confusion in best edges Annotating repeats in reads for tig 549/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5320:10019 - closest read 516267 ( +3326) 1994:10019 ( +0) (contained) saved region 5320:10019 - closest read 415796 ( +137) 5183:13552 ( +3533) (contained) saved region 5320:10019 - closest read 415797 ( +95) 5225:13556 ( +3537) (contained) saved region 5320:10019 - closest read 415795 ( +7) 5313:13555 ( +3536) (contained) saved region 5320:10019 - closest 5' read 415797 ( +95) 5225:13556 ( +3537) saved region 5320:10019 - closest 3' read 516267 ( +3326) 1994:10019 ( +0) search for confused edges: discard region 5320:10019 - no confusion in best edges Annotating repeats in reads for tig 551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 553/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 563/113047. Annotated with 368 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9842:18393 - closest 5' read 632050 ( +3109) 6733:17840 ( -553) saved region 9842:18393 - closest 3' read 667397 ( -1886) 11728:21977 ( +3584) search for confused edges: discard region 9842:18393 - no confusion in best edges Annotating repeats in reads for tig 564/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13213:13958 - contained in read 600255 3310- 14555 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 570/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 22057:23329 - contained in read 503588 15235- 23329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 573/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 0:4198 - contained in read 240981 0- 10198 discard region 5398:4671 - contained in read 240981 0- 10198 discard region 15306:19992 - contained in read 606979 9369- 24954 thickest edges to the repeat regions: saved region 29334:30065 - closest read 32196 ( +2630) 26704:30065 ( +0) (contained) saved region 29334:30065 - closest 5' read 32196 ( +2630) 26704:30065 ( +0) saved region 29334:30065 - closest 3' read 32196 ( +2630) 26704:30065 ( +0) search for confused edges: discard region 29334:30065 - no confusion in best edges Annotating repeats in reads for tig 574/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 14218:18855 - contained in read 551307 8438- 18855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 576/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8902:16864 - closest 5' read 24203 ( +1936) 6966:16211 ( -653) saved region 8902:16864 - closest 3' read 238081 ( -2687) 11589:16976 ( +112) search for confused edges: discard region 8902:16864 - no confusion in best edges Annotating repeats in reads for tig 591/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 6311:9037 - contained in read 571358 2991- 9037 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 592/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4913:6268 - closest 5' read 269646 ( +4886) 27:6084 ( -184) saved region 4913:6268 - closest 3' read 504369 ( -435) 5348:12992 ( +6724) search for confused edges: discard region 4913:6268 - no confusion in best edges Annotating repeats in reads for tig 598/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 27120:28169 - contained in read 430032 24365- 31355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 602/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4742:10701 - closest 5' read 547415 ( +4319) 423:10265 ( -436) saved region 4742:10701 - closest 3' read 631950 ( -1608) 6350:12197 ( +1496) search for confused edges: tig 602 read 631950 pos 6350-12197 IS confused by 5' edge to read 517745 - best edge read 547415 len 3863 erate 0.0151 score 3804.67 - alt edge len 3528 erate 0.0145 score 3476.84 - absdiff 327.82 percdiff 9.0043 saved region 4742:10701 - 1 best edges are potentially confused break tig 602 into up to 3 pieces: 0 4242 unique (length 4242) 4242 11201 repeat (length 6959) 11201 12215 unique (length 1014) Creating Unitig 113275 Creating Unitig 113276 Creating Unitig 113277 For tig 602 unique region 0 4242 - 0/ 11 reads repeat/unique - unitig 113275 created. For tig 602 repeat region 4242 11201 - 13/ 0 reads repeat/unique - unitig 113276 created. For tig 602 unique region 11201 12215 - 0/ 4 reads repeat/unique - unitig 113277 created. Annotating repeats in reads for tig 608/113047. Annotated with 608 overlaps. Scan reads to discard spanned repeats. discard region 0:1258 - contained in read 657197 0- 7136 discard region 11177:11695 - contained in read 347499 5335- 12952 thickest edges to the repeat regions: saved region 13395:20209 - closest 5' read 491920 ( +854) 12541:19092 ( -1117) saved region 13395:20209 - closest 3' read 628925 ( -324) 13719:21550 ( +1341) saved region 21379:25775 - closest 5' read 406523 ( +3732) 17647:23350 ( -2425) saved region 21379:25775 - closest 3' read 450243 ( -47) 21426:31659 ( +5884) search for confused edges: tig 608 read 616815 pos 11153-17636 NOT confused by 3' edge to read 51901 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 1188 erate 0.0675 score 1107.81 - absdiff 2553.18 percdiff 107.0785 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 94998 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 3848 erate 0.0541 score 3639.82 - absdiff 21.16 percdiff 0.5798 tig 608 read 616815 pos 11153-17636 NOT confused by 3' edge to read 110294 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 1557 erate 0.0597 score 1464.05 - absdiff 2196.94 percdiff 85.7337 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 121352 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2631 erate 0.0433 score 2517.08 - absdiff 1143.91 percdiff 37.0313 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 243906 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2645 erate 0.0598 score 2486.83 - absdiff 1174.16 percdiff 38.1976 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 498841 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2841 erate 0.0429 score 2719.12 - absdiff 941.87 percdiff 29.5251 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 498843 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2814 erate 0.0459 score 2684.84 - absdiff 976.15 percdiff 30.7651 tig 608 read 616815 pos 11153-17636 IS confused by 3' edge to read 588779 - best edge read 628925 len 3848 erate 0.0486 score 3660.99 - alt edge len 2218 erate 0.0595 score 2086.03 - absdiff 1574.96 percdiff 54.8096 tig 608 read 406523 pos 17647-23350 IS confused by 3' edge to read 590625 - best edge read 450243 len 1951 erate 0.0551 score 1843.50 - alt edge len 1401 erate 0.0642 score 1311.06 - absdiff 532.44 percdiff 33.7572 saved region 13395:20209 - 6 best edges are potentially confused saved region 21379:25775 - 1 best edges are potentially confused break tig 608 into up to 5 pieces: 0 12895 unique (length 12895) 12895 20709 repeat (length 7814) 20709 20879 unique (length 170) 20879 26275 repeat (length 5396) 26275 33557 unique (length 7282) Creating Unitig 113278 Creating Unitig 113279 Creating Unitig 113280 Creating Unitig 113281 Creating Unitig 113282 For tig 608 unique region 0 12895 - 0/ 12 reads repeat/unique - unitig 113278 created. For tig 608 repeat region 12895 20709 - 49/ 0 reads repeat/unique - unitig 113279 created. For tig 608 unique region 20709 20879 - 0/ 11 reads repeat/unique - unitig 113280 created. For tig 608 repeat region 20879 26275 - 1/ 0 reads repeat/unique - unitig 113282 created. For tig 608 unique region 26275 33557 - 0/ 18 reads repeat/unique - unitig 113281 created. Annotating repeats in reads for tig 609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 612/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 10146:10739 - contained in read 135278 6126- 14043 thickest edges to the repeat regions: saved region 11263:18705 - closest 5' read 374807 ( +3020) 8243:17034 ( -1671) saved region 11263:18705 - closest 3' read 557358 ( -647) 11910:23231 ( +4526) search for confused edges: tig 612 read 135280 pos 6141-14074 IS confused by 3' edge to read 114617 - best edge read 557358 len 2151 erate 0.0098 score 2129.92 - alt edge len 683 erate 0.0176 score 670.98 - absdiff 1458.94 percdiff 104.1766 tig 612 read 135280 pos 6141-14074 IS confused by 3' edge to read 114618 - best edge read 557358 len 2151 erate 0.0098 score 2129.92 - alt edge len 671 erate 0.0135 score 661.94 - absdiff 1467.98 percdiff 105.1613 saved region 11263:18705 - 2 best edges are potentially confused break tig 612 into up to 3 pieces: 0 10763 unique (length 10763) 10763 19205 repeat (length 8442) 19205 27763 unique (length 8558) Creating Unitig 113283 Creating Unitig 113284 Creating Unitig 113285 For tig 612 unique region 0 10763 - 0/ 17 reads repeat/unique - unitig 113283 created. For tig 612 repeat region 10763 19205 - 12/ 0 reads repeat/unique - unitig 113284 created. For tig 612 unique region 19205 27763 - 0/ 17 reads repeat/unique - unitig 113285 created. Annotating repeats in reads for tig 613/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:3118 - contained in read 672224 0- 5979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 616/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 8512:11202 - contained in read 676365 5029- 11202 thickest edges to the repeat regions: saved region 4396:5655 - closest read 587509 ( +4099) 297:5655 ( +0) (contained) saved region 4396:5655 - closest 5' read 587509 ( +4099) 297:5655 ( +0) saved region 4396:5655 - closest 3' read 587509 ( +4099) 297:5655 ( +0) search for confused edges: discard region 4396:5655 - no confusion in best edges Annotating repeats in reads for tig 619/113047. Annotated with 246 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10230:21767 - closest 5' read 96077 ( +0) 10230:16258 ( -5509) saved region 10230:21767 - closest 3' read 623947 ( -4060) 14290:22231 ( +464) search for confused edges: tig 619 read 96073 pos 10471-16674 IS confused by 5' edge to read 47237 - best edge read 623947 len 1888 erate 0.0621 score 1770.76 - alt edge len 1883 erate 0.0555 score 1778.49 - absdiff 7.74 percdiff 0.4361 tig 619 read 96073 pos 10471-16674 IS confused by 5' edge to read 708595 - best edge read 623947 len 1888 erate 0.0621 score 1770.76 - alt edge len 602 erate 0.0714 score 559.02 - absdiff 1211.74 percdiff 104.0220 saved region 10230:21767 - 2 best edges are potentially confused break tig 619 into up to 3 pieces: 0 9730 unique (length 9730) 9730 22267 repeat (length 12537) 22267 27947 unique (length 5680) Creating Unitig 113286 Creating Unitig 113287 Creating Unitig 113288 For tig 619 unique region 0 9730 - 0/ 15 reads repeat/unique - unitig 113286 created. For tig 619 repeat region 9730 22267 - 18/ 0 reads repeat/unique - unitig 113287 created. For tig 619 unique region 22267 27947 - 0/ 7 reads repeat/unique - unitig 113288 created. Annotating repeats in reads for tig 621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 623/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3198:8705 - contained in read 715268 0- 11274 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 624/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 3962:4834 - contained in read 721147 0- 6534 discard region 5801:4982 - contained in read 721147 0- 6534 discard region 6050:6873 - contained in read 709809 399- 8904 thickest edges to the repeat regions: saved region 10418:19607 - closest 5' read 307455 ( +0) 10418:18797 ( -810) saved region 10418:19607 - closest 3' read 465084 ( -932) 11350:21958 ( +2351) saved region 19828:24746 - closest read 117382 ( +434) 19394:28179 ( +3433) (contained) saved region 19828:24746 - closest 5' read 117382 ( +434) 19394:28179 ( +3433) saved region 19828:24746 - closest 3' read 117382 ( +434) 19394:28179 ( +3433) search for confused edges: discard region 10418:19607 - no confusion in best edges discard region 19828:24746 - no confusion in best edges Annotating repeats in reads for tig 630/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 1391:5505 - contained in read 674269 107- 7673 discard region 18932:20018 - contained in read 247650 12039- 21753 thickest edges to the repeat regions: saved region 12039:18902 - closest read 247650 ( +0) 12039:21753 ( +2851) (contained) saved region 12039:18902 - closest 5' read 247650 ( +0) 12039:21753 ( +2851) saved region 12039:18902 - closest 3' read 247650 ( +0) 12039:21753 ( +2851) search for confused edges: discard region 12039:18902 - no confusion in best edges Annotating repeats in reads for tig 632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 640/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 641/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 642/113047. Annotated with 489 overlaps. Scan reads to discard spanned repeats. discard region 1729:3238 - contained in read 573753 0- 8180 discard region 9911:11116 - contained in read 76741 5790- 13276 discard region 20781:21867 - contained in read 503631 19171- 23258 thickest edges to the repeat regions: saved region 3660:8530 - closest 5' read 573754 ( +3324) 336:8517 ( -13) saved region 3660:8530 - closest 3' read 376556 ( -930) 4590:8530 ( +0) saved region 11427:19450 - closest 5' read 564119 ( +1959) 9468:18627 ( -823) saved region 11427:19450 - closest 3' read 118290 ( -4455) 15882:19784 ( +334) search for confused edges: discard region 3660:8530 - no confusion in best edges discard region 11427:19450 - no confusion in best edges Annotating repeats in reads for tig 644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 647/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16411:17056 - closest read 143653 ( +8337) 8074:17313 ( +257) (contained) saved region 16411:17056 - closest read 413021 ( +6083) 10328:17056 ( +0) (contained) saved region 16411:17056 - closest 5' read 143653 ( +8337) 8074:17313 ( +257) saved region 16411:17056 - closest 3' read 143653 ( +8337) 8074:17313 ( +257) search for confused edges: discard region 16411:17056 - no confusion in best edges Annotating repeats in reads for tig 648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 653/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:1642 - contained in read 632299 0- 5907 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 658/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10433:16238 - closest 5' read 118574 (+10433) 0:14544 ( -1694) saved region 10433:16238 - closest 3' read 357786 ( -107) 10540:17306 ( +1068) search for confused edges: tig 658 read 118574 pos 0-14544 NOT confused by 3' edge to read 661490 - best edge read 357786 len 3919 erate 0.0681 score 3652.12 - alt edge len 513 erate 0.0703 score 476.94 - absdiff 3175.18 percdiff 153.7970 tig 658 read 118574 pos 0-14544 NOT confused by 3' edge to read 687739 - best edge read 357786 len 3919 erate 0.0681 score 3652.12 - alt edge len 522 erate 0.0691 score 485.93 - absdiff 3166.19 percdiff 153.0281 tig 658 read 118574 pos 0-14544 NOT confused by 3' edge to read 687740 - best edge read 357786 len 3919 erate 0.0681 score 3652.12 - alt edge len 522 erate 0.0653 score 487.91 - absdiff 3164.20 percdiff 152.8589 discard region 10433:16238 - no confusion in best edges Annotating repeats in reads for tig 661/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2447:3008 - contained in read 138034 0- 5103 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 663/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1155:13307 - closest 5' read 142579 ( +1155) 0:10624 ( -2683) saved region 1155:13307 - closest 3' read 211233 ( -2709) 3864:13307 ( +0) search for confused edges: tig 663 read 142579 pos 0-10624 NOT confused by 3' edge to read 287067 - best edge read 211233 len 6659 erate 0.0234 score 6503.18 - alt edge len 3186 erate 0.0273 score 3099.02 - absdiff 3404.16 percdiff 70.9037 tig 663 read 142579 pos 0-10624 NOT confused by 3' edge to read 295107 - best edge read 211233 len 6659 erate 0.0234 score 6503.18 - alt edge len 3277 erate 0.0211 score 3207.86 - absdiff 3295.32 percdiff 67.8676 tig 663 read 142579 pos 0-10624 IS confused by 3' edge to read 534111 - best edge read 211233 len 6659 erate 0.0234 score 6503.18 - alt edge len 4581 erate 0.0223 score 4478.84 - absdiff 2024.34 percdiff 36.8664 saved region 1155:13307 - 1 best edges are potentially confused break tig 663 into up to 2 pieces: 0 655 unique (length 655) 655 13307 repeat (length 12652) Creating Unitig 113289 Creating Unitig 113290 For tig 663 unique region 0 655 - 0/ 1 reads repeat/unique - unitig 113289 created. For tig 663 repeat region 655 13307 - 12/ 0 reads repeat/unique - unitig 113290 created. Annotating repeats in reads for tig 664/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 24490:25668 - contained in read 660966 20838- 32008 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 667/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 23055:27099 - closest 5' read 506220 ( +6191) 16864:26058 ( -1041) saved region 23055:27099 - closest 3' read 711730 ( -1) 23056:27099 ( +0) search for confused edges: tig 667 read 506221 pos 16859-26010 IS confused by 5' edge to read 54021 - best edge read 54514 len 2895 erate 0.0629 score 2712.90 - alt edge len 2258 erate 0.0717 score 2096.10 - absdiff 616.80 percdiff 25.6520 tig 667 read 506221 pos 16859-26010 IS confused by 5' edge to read 71427 - best edge read 54514 len 2895 erate 0.0629 score 2712.90 - alt edge len 1882 erate 0.0682 score 1753.65 - absdiff 959.26 percdiff 42.9529 tig 667 read 506221 pos 16859-26010 IS confused by 5' edge to read 182568 - best edge read 54514 len 2895 erate 0.0629 score 2712.90 - alt edge len 2257 erate 0.0622 score 2116.61 - absdiff 596.29 percdiff 24.6936 saved region 23055:27099 - 3 best edges are potentially confused break tig 667 into up to 3 pieces: 0 22555 unique (length 22555) 22555 27599 repeat (length 5044) 27599 32398 unique (length 4799) Creating Unitig 113291 Creating Unitig 113292 Creating Unitig 113293 For tig 667 unique region 0 22555 - 0/ 42 reads repeat/unique - unitig 113291 created. For tig 667 repeat region 22555 27599 - 20/ 0 reads repeat/unique - unitig 113292 created. For tig 667 unique region 27599 32398 - 0/ 2 reads repeat/unique - unitig 113293 created. Annotating repeats in reads for tig 670/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14029:15070 - closest read 444642 ( +6191) 7838:15070 ( +0) (contained) saved region 14029:15070 - closest read 253889 ( +207) 13822:20576 ( +5506) (contained) saved region 14029:15070 - closest read 253890 ( +203) 13826:19463 ( +4393) (contained) saved region 14029:15070 - closest 5' read 253889 ( +207) 13822:20576 ( +5506) saved region 14029:15070 - closest 3' read 444642 ( +6191) 7838:15070 ( +0) search for confused edges: discard region 14029:15070 - no confusion in best edges Annotating repeats in reads for tig 671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 672/113047. Annotated with 123 overlaps. Scan reads to discard spanned repeats. discard region 0:2153 - contained in read 587281 0- 19663 discard region 20421:21110 - contained in read 474316 16164- 22869 discard region 23829:26053 - contained in read 19688 20737- 27276 thickest edges to the repeat regions: saved region 3301:20428 - closest 5' read 587281 ( +3301) 0:19663 ( -765) saved region 3301:20428 - closest 3' read 640311 ( -2341) 5642:20532 ( +104) search for confused edges: tig 672 read 587281 pos 0-19663 NOT confused by 3' edge to read 363181 - best edge read 249123 len 8045 erate 0.0274 score 7824.57 - alt edge len 3970 erate 0.0232 score 3877.90 - absdiff 3946.67 percdiff 67.4503 tig 672 read 587281 pos 0-19663 NOT confused by 3' edge to read 363183 - best edge read 249123 len 8045 erate 0.0274 score 7824.57 - alt edge len 3929 erate 0.0227 score 3839.81 - absdiff 3984.76 percdiff 68.3235 tig 672 read 249123 pos 12030-20507 NOT confused by 3' edge to read 376338 - best edge read 587281 len 8000 erate 0.0274 score 7780.80 - alt edge len 1564 erate 0.0700 score 1454.52 - absdiff 6326.28 percdiff 137.0019 tig 672 read 249123 pos 12030-20507 NOT confused by 3' edge to read 518441 - best edge read 587281 len 8000 erate 0.0274 score 7780.80 - alt edge len 1574 erate 0.0731 score 1458.94 - absdiff 6321.86 percdiff 136.8406 tig 672 read 249123 pos 12030-20507 NOT confused by 3' edge to read 518444 - best edge read 587281 len 8000 erate 0.0274 score 7780.80 - alt edge len 912 erate 0.0713 score 846.97 - absdiff 6933.83 percdiff 160.7327 discard region 3301:20428 - no confusion in best edges Annotating repeats in reads for tig 673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 685/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17409:19553 - contained in read 408186 10947- 23775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 686/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 913:2814 - contained in read 232258 0- 6972 thickest edges to the repeat regions: saved region 5425:8472 - closest 5' read 419342 ( +91) 5334:8178 ( -294) saved region 5425:8472 - closest 3' read 79028 ( -147) 5572:8959 ( +487) search for confused edges: tig 686 read 419342 pos 5334-8178 IS confused by 5' edge to read 40225 - best edge read 79028 len 2551 erate 0.0501 score 2423.19 - alt edge len 1086 erate 0.0373 score 1045.49 - absdiff 1377.70 percdiff 79.4366 tig 686 read 79028 pos 5572-8959 IS confused by 5' edge to read 509908 - best edge read 419342 len 2581 erate 0.0501 score 2451.69 - alt edge len 831 erate 0.0630 score 778.65 - absdiff 1673.04 percdiff 103.5832 saved region 5425:8472 - 2 best edges are potentially confused break tig 686 into up to 3 pieces: 0 4925 unique (length 4925) 4925 8972 repeat (length 4047) 8972 14968 unique (length 5996) Creating Unitig 113294 Creating Unitig 113295 Creating Unitig 113296 For tig 686 unique region 0 4925 - 0/ 7 reads repeat/unique - unitig 113294 created. For tig 686 repeat region 4925 8972 - 7/ 0 reads repeat/unique - unitig 113295 created. For tig 686 unique region 8972 14968 - 0/ 3 reads repeat/unique - unitig 113296 created. Annotating repeats in reads for tig 687/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12934:13742 - closest read 118129 ( +0) 12934:16343 ( +2601) (contained) saved region 12934:13742 - closest 5' read 118129 ( +0) 12934:16343 ( +2601) saved region 12934:13742 - closest 3' read 118129 ( +0) 12934:16343 ( +2601) search for confused edges: discard region 12934:13742 - no confusion in best edges Annotating repeats in reads for tig 688/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 9562:10785 - contained in read 557262 2262- 11433 discard region 13686:15939 - contained in read 81186 9175- 17662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 696/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 17103:18154 - contained in read 101083 9260- 18892 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 701/113047. Annotated with 72 overlaps. Scan reads to discard spanned repeats. discard region 21452:24346 - contained in read 674096 14932- 26110 discard region 27492:28760 - contained in read 276330 24629- 31207 thickest edges to the repeat regions: saved region 11410:15605 - closest read 610480 ( +2314) 9096:15605 ( +0) (contained) saved region 11410:15605 - closest 5' read 610480 ( +2314) 9096:15605 ( +0) saved region 11410:15605 - closest 3' read 610480 ( +2314) 9096:15605 ( +0) search for confused edges: discard region 11410:15605 - no confusion in best edges Annotating repeats in reads for tig 702/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 703/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 8403:10940 - contained in read 420816 4357- 10940 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 708/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:4269 - contained in read 17730 0- 14659 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 711/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 17938:18942 - contained in read 605005 14636- 20390 thickest edges to the repeat regions: saved region 1809:6401 - closest 5' read 676581 ( +1633) 176:6269 ( -132) saved region 1809:6401 - closest 3' read 605643 ( -400) 2209:6401 ( +0) search for confused edges: tig 711 read 676581 pos 176-6269 IS confused by 5' edge to read 709170 - best edge read 93646 len 4035 erate 0.0485 score 3839.30 - alt edge len 3112 erate 0.0125 score 3073.10 - absdiff 766.20 percdiff 22.1689 tig 711 read 676581 pos 176-6269 IS confused by 5' edge to read 709173 - best edge read 93646 len 4035 erate 0.0485 score 3839.30 - alt edge len 3105 erate 0.0116 score 3068.98 - absdiff 770.32 percdiff 22.3014 saved region 1809:6401 - 2 best edges are potentially confused break tig 711 into up to 3 pieces: 0 1309 unique (length 1309) 1309 6901 repeat (length 5592) 6901 26894 unique (length 19993) Creating Unitig 113297 Creating Unitig 113298 Creating Unitig 113299 For tig 711 unique region 0 1309 - 0/ 3 reads repeat/unique - unitig 113297 created. For tig 711 repeat region 1309 6901 - 16/ 0 reads repeat/unique - unitig 113298 created. For tig 711 unique region 6901 26894 - 0/ 51 reads repeat/unique - unitig 113299 created. Annotating repeats in reads for tig 712/113047. Annotated with 374 overlaps. Scan reads to discard spanned repeats. discard region 0:5843 - contained in read 701936 0- 10605 discard region 6133:7616 - contained in read 701936 0- 10605 discard region 8322:11347 - contained in read 483866 4635- 12334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 713/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6037:7096 - contained in read 477145 432- 7917 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 715/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 15140:16230 - contained in read 505550 10439- 19031 thickest edges to the repeat regions: saved region 9123:10890 - closest read 483130 ( +0) 9123:15496 ( +4606) (contained) saved region 9123:10890 - closest 5' read 483130 ( +0) 9123:15496 ( +4606) saved region 9123:10890 - closest 3' read 483130 ( +0) 9123:15496 ( +4606) search for confused edges: tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 131715 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1698 erate 0.0432 score 1624.65 - absdiff 32.85 percdiff 2.0427 tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 169588 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1699 erate 0.0644 score 1589.58 - absdiff 2.21 percdiff 0.1390 tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 340700 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1244 erate 0.0632 score 1165.38 - absdiff 426.42 percdiff 30.9314 tig 715 read 185618 pos 2885-10888 IS confused by 5' edge to read 643997 - best edge read 483130 len 1701 erate 0.0642 score 1591.80 - alt edge len 1697 erate 0.0497 score 1612.66 - absdiff 20.86 percdiff 1.3021 saved region 9123:10890 - 4 best edges are potentially confused break tig 715 into up to 3 pieces: 0 8623 unique (length 8623) 8623 11390 repeat (length 2767) 11390 40583 unique (length 29193) Creating Unitig 113300 Creating Unitig 113301 Creating Unitig 113302 For tig 715 unique region 0 8623 - 0/ 11 reads repeat/unique - unitig 113300 created. For tig 715 repeat region 8623 11390 - 9/ 0 reads repeat/unique - unitig 113302 created. For tig 715 unique region 11390 40583 - 0/ 39 reads repeat/unique - unitig 113301 created. Annotating repeats in reads for tig 721/113047. Annotated with 86 overlaps. Scan reads to discard spanned repeats. discard region 4329:9635 - contained in read 113383 1188- 16676 discard region 21317:24679 - contained in read 341730 15484- 27065 thickest edges to the repeat regions: saved region 25643:29023 - closest read 86347 ( +4302) 21341:29214 ( +191) (contained) saved region 25643:29023 - closest read 86348 ( +2845) 22798:29213 ( +190) (contained) saved region 25643:29023 - closest 5' read 86347 ( +4302) 21341:29214 ( +191) saved region 25643:29023 - closest 3' read 86347 ( +4302) 21341:29214 ( +191) search for confused edges: discard region 25643:29023 - no confusion in best edges Annotating repeats in reads for tig 725/113047. Annotated with 127 overlaps. Scan reads to discard spanned repeats. discard region 3948:11283 - contained in read 452242 3117- 11877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 726/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3267:8 - contained in read 362739 0- 6706 discard region 8713:15082 - contained in read 543464 8153- 15686 discard region 22388:24406 - contained in read 597845 19623- 25000 discard region 25204:26563 - contained in read 90056 20872- 27643 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 727/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2706:5421 - contained in read 190812 0- 6181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 730/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 12236:15002 - contained in read 158306 7926- 17875 discard region 21127:22000 - contained in read 442903 15133- 22984 thickest edges to the repeat regions: saved region 6055:7992 - closest read 695183 ( +12) 6043:14298 ( +6306) (contained) saved region 6055:7992 - closest read 103012 ( +8) 6047:8183 ( +191) (contained) saved region 6055:7992 - closest read 214761 ( +7) 6048:15015 ( +7023) (contained) saved region 6055:7992 - closest read 655429 ( +3) 6052:13932 ( +5940) (contained) saved region 6055:7992 - closest 5' read 214761 ( +7) 6048:15015 ( +7023) saved region 6055:7992 - closest 3' read 695183 ( +12) 6043:14298 ( +6306) search for confused edges: discard region 6055:7992 - no confusion in best edges Annotating repeats in reads for tig 732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 737/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 9567:13738 - contained in read 453725 5195- 14964 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 738/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 8662:10025 - contained in read 236256 4224- 13621 discard region 25116:29169 - contained in read 163124 24127- 29169 thickest edges to the repeat regions: saved region 21265:23037 - closest read 629020 ( +0) 21265:27305 ( +4268) (contained) saved region 21265:23037 - closest 5' read 629020 ( +0) 21265:27305 ( +4268) saved region 21265:23037 - closest 3' read 629020 ( +0) 21265:27305 ( +4268) search for confused edges: tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 118750 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 656 erate 0.0521 score 621.82 - absdiff 946.14 percdiff 86.4142 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 128046 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 610 erate 0.0613 score 572.61 - absdiff 995.36 percdiff 92.9993 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 272629 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 788 erate 0.0500 score 748.60 - absdiff 819.37 percdiff 70.7397 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 284605 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1350 erate 0.0720 score 1252.80 - absdiff 315.17 percdiff 22.3462 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 317609 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 910 erate 0.0533 score 861.50 - absdiff 706.47 percdiff 58.1585 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 378204 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 715 erate 0.0707 score 664.45 - absdiff 903.52 percdiff 80.9452 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 378206 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 726 erate 0.0641 score 679.46 - absdiff 888.50 percdiff 79.0684 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 378207 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 733 erate 0.0657 score 684.84 - absdiff 883.12 percdiff 78.4021 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 383776 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1101 erate 0.0521 score 1043.64 - absdiff 524.33 percdiff 40.1537 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 456464 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1213 erate 0.0348 score 1170.79 - absdiff 397.18 percdiff 29.0043 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 459946 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1163 erate 0.0415 score 1114.74 - absdiff 453.23 percdiff 33.7891 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 459947 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1164 erate 0.0424 score 1114.65 - absdiff 453.32 percdiff 33.7969 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 489695 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1102 erate 0.0392 score 1058.80 - absdiff 509.16 percdiff 38.7674 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 489698 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 1101 erate 0.0336 score 1064.01 - absdiff 503.96 percdiff 38.2952 tig 738 read 604543 pos 15768-22996 IS confused by 3' edge to read 535887 - best edge read 629020 len 1694 erate 0.0744 score 1567.97 - alt edge len 838 erate 0.0434 score 801.63 - absdiff 766.34 percdiff 64.6807 saved region 21265:23037 - 15 best edges are potentially confused break tig 738 into up to 3 pieces: 0 20765 unique (length 20765) 20765 23537 repeat (length 2772) 23537 29169 unique (length 5632) Creating Unitig 113303 Creating Unitig 113304 Creating Unitig 113305 For tig 738 unique region 0 20765 - 0/ 40 reads repeat/unique - unitig 113303 created. For tig 738 repeat region 20765 23537 - 3/ 0 reads repeat/unique - unitig 113305 created. For tig 738 unique region 23537 29169 - 0/ 19 reads repeat/unique - unitig 113304 created. Annotating repeats in reads for tig 748/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 8401:13518 - contained in read 522359 7635- 17032 discard region 14573:16712 - contained in read 346118 13434- 20746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 749/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14469:20165 - closest 5' read 550283 (+10000) 4469:16950 ( -3215) saved region 14469:20165 - closest 3' read 250138 ( -580) 15049:26825 ( +6660) search for confused edges: tig 749 read 550283 pos 4469-16950 IS confused by 5' edge to read 597983 - best edge read 250139 len 1869 erate 0.0599 score 1757.05 - alt edge len 1043 erate 0.0416 score 999.61 - absdiff 757.44 percdiff 54.9532 tig 749 read 250139 pos 15056-26811 IS confused by 3' edge to read 62998 - best edge read 550283 len 1908 erate 0.0599 score 1793.71 - alt edge len 1244 erate 0.0732 score 1152.94 - absdiff 640.77 percdiff 43.4915 tig 749 read 250139 pos 15056-26811 IS confused by 3' edge to read 183287 - best edge read 550283 len 1908 erate 0.0599 score 1793.71 - alt edge len 955 erate 0.0593 score 898.37 - absdiff 895.34 percdiff 66.5168 tig 749 read 250139 pos 15056-26811 IS confused by 3' edge to read 358697 - best edge read 550283 len 1908 erate 0.0599 score 1793.71 - alt edge len 3529 erate 0.0456 score 3368.08 - absdiff 1574.37 percdiff 61.0008 saved region 14469:20165 - 4 best edges are potentially confused break tig 749 into up to 3 pieces: 0 13969 unique (length 13969) 13969 20665 repeat (length 6696) 20665 40958 unique (length 20293) Creating Unitig 113306 Creating Unitig 113307 Creating Unitig 113308 For tig 749 unique region 0 13969 - 0/ 5 reads repeat/unique - unitig 113306 created. For tig 749 repeat region 13969 20665 - 2/ 0 reads repeat/unique - unitig 113307 created. For tig 749 unique region 20665 40958 - 0/ 46 reads repeat/unique - unitig 113308 created. Annotating repeats in reads for tig 752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 760/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 7745:9893 - contained in read 632098 6082- 14081 discard region 12365:17545 - contained in read 468220 9376- 18626 thickest edges to the repeat regions: saved region 21374:23561 - closest 5' read 365618 ( +0) 21374:23519 ( -42) saved region 21374:23561 - closest 3' read 289702 ( -8) 21382:23588 ( +27) search for confused edges: discard region 21374:23561 - no confusion in best edges Annotating repeats in reads for tig 769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 771/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17699:22009 - closest read 290306 ( +0) 17699:26678 ( +4669) (contained) saved region 17699:22009 - closest 5' read 290306 ( +0) 17699:26678 ( +4669) saved region 17699:22009 - closest 3' read 290306 ( +0) 17699:26678 ( +4669) search for confused edges: tig 771 read 674865 pos 15453-21931 NOT confused by 3' edge to read 15296 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 694 erate 0.0738 score 642.78 - absdiff 3265.09 percdiff 143.4998 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 72949 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 3423 erate 0.0526 score 3242.95 - absdiff 664.93 percdiff 18.5972 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 292478 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 4029 erate 0.0510 score 3823.52 - absdiff 84.36 percdiff 2.1821 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 426187 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 4030 erate 0.0520 score 3820.44 - absdiff 87.44 percdiff 2.2627 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 543427 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 4028 erate 0.0393 score 3869.70 - absdiff 38.18 percdiff 0.9817 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 614625 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 2365 erate 0.0423 score 2264.96 - absdiff 1642.92 percdiff 53.2305 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 614626 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 2366 erate 0.0338 score 2286.03 - absdiff 1621.85 percdiff 52.3691 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 702147 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 3578 erate 0.0574 score 3372.62 - absdiff 535.25 percdiff 14.7038 tig 771 read 674865 pos 15453-21931 IS confused by 3' edge to read 702149 - best edge read 290306 len 4193 erate 0.0680 score 3907.88 - alt edge len 3573 erate 0.0477 score 3402.57 - absdiff 505.31 percdiff 13.8243 saved region 17699:22009 - 8 best edges are potentially confused break tig 771 into up to 3 pieces: 0 17199 unique (length 17199) 17199 22509 repeat (length 5310) 22509 27706 unique (length 5197) Creating Unitig 113309 Creating Unitig 113310 Creating Unitig 113311 For tig 771 unique region 0 17199 - 0/ 27 reads repeat/unique - unitig 113309 created. For tig 771 repeat region 17199 22509 - 7/ 0 reads repeat/unique - unitig 113311 created. For tig 771 unique region 22509 27706 - 0/ 7 reads repeat/unique - unitig 113310 created. Annotating repeats in reads for tig 779/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3196:0 - contained in read 152903 0- 7701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 782/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 784/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:5781 - contained in read 39463 0- 7095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 790/113047. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 16838:22394 - contained in read 258718 13073- 24756 discard region 24338:26454 - contained in read 684250 20380- 30166 thickest edges to the repeat regions: saved region 8821:16832 - closest 5' read 421039 ( +1774) 7047:16386 ( -446) saved region 8821:16832 - closest 3' read 179717 ( -586) 9407:21466 ( +4634) saved region 26900:32379 - closest 5' read 154914 ( +2562) 24338:32363 ( -16) saved region 26900:32379 - closest 3' read 551863 ( -2058) 28958:33739 ( +1360) search for confused edges: discard region 8821:16832 - no confusion in best edges discard region 26900:32379 - no confusion in best edges Annotating repeats in reads for tig 793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 795/113047. Annotated with 122 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21399:30750 - closest 5' read 385418 ( +0) 21399:29597 ( -1153) saved region 21399:30750 - closest 3' read 602064 ( -1880) 23279:30998 ( +248) search for confused edges: tig 795 read 385418 pos 21399-29597 IS confused by 5' edge to read 323974 - best edge read 54449 len 7311 erate 0.0193 score 7169.90 - alt edge len 5371 erate 0.0335 score 5191.07 - absdiff 1978.83 percdiff 32.0173 tig 795 read 385418 pos 21399-29597 IS confused by 5' edge to read 323976 - best edge read 54449 len 7311 erate 0.0193 score 7169.90 - alt edge len 5368 erate 0.0291 score 5211.79 - absdiff 1958.11 percdiff 31.6291 tig 795 read 385418 pos 21399-29597 IS confused by 5' edge to read 502457 - best edge read 54449 len 7311 erate 0.0193 score 7169.90 - alt edge len 7242 erate 0.0231 score 7074.71 - absdiff 95.19 percdiff 1.3365 tig 795 read 54449 pos 21466-29947 IS confused by 3' edge to read 102630 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 5261 erate 0.0145 score 5184.72 - absdiff 2037.16 percdiff 32.8400 tig 795 read 54449 pos 21466-29947 NOT confused by 3' edge to read 355790 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 4509 erate 0.0158 score 4437.76 - absdiff 2784.12 percdiff 47.7565 tig 795 read 54449 pos 21466-29947 NOT confused by 3' edge to read 355791 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 4513 erate 0.0160 score 4440.79 - absdiff 2781.08 percdiff 47.6921 tig 795 read 54449 pos 21466-29947 NOT confused by 3' edge to read 501593 - best edge read 385418 len 7364 erate 0.0193 score 7221.87 - alt edge len 1865 erate 0.0673 score 1739.49 - absdiff 5482.39 percdiff 122.3562 saved region 21399:30750 - 4 best edges are potentially confused break tig 795 into up to 3 pieces: 0 20899 unique (length 20899) 20899 31250 repeat (length 10351) 31250 37339 unique (length 6089) Creating Unitig 113312 Creating Unitig 113313 Creating Unitig 113314 For tig 795 unique region 0 20899 - 0/ 24 reads repeat/unique - unitig 113312 created. For tig 795 repeat region 20899 31250 - 57/ 0 reads repeat/unique - unitig 113313 created. For tig 795 unique region 31250 37339 - 0/ 13 reads repeat/unique - unitig 113314 created. Annotating repeats in reads for tig 796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 800/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2909:8786 - closest read 196135 ( +640) 2269:8786 ( +0) (contained) saved region 2909:8786 - closest 5' read 196135 ( +640) 2269:8786 ( +0) saved region 2909:8786 - closest 3' read 196135 ( +640) 2269:8786 ( +0) search for confused edges: discard region 2909:8786 - no confusion in best edges Annotating repeats in reads for tig 814/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9974:12678 - contained in read 549639 1441- 12678 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 815/113047. Annotated with 98 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7656:11875 - closest 5' read 47879 ( +7656) 0:11835 ( -40) saved region 7656:11875 - closest 3' read 132325 ( -80) 7736:11948 ( +73) search for confused edges: tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 220680 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 2887 erate 0.0329 score 2792.02 - absdiff 18.17 percdiff 0.6528 tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 364636 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 2358 erate 0.0519 score 2235.62 - absdiff 538.23 percdiff 21.4885 tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 366016 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 1910 erate 0.0540 score 1806.86 - absdiff 966.99 percdiff 42.2201 tig 815 read 215387 pos 8863-15540 IS confused by 5' edge to read 605565 - best edge read 47879 len 2918 erate 0.0494 score 2773.85 - alt edge len 1220 erate 0.0383 score 1173.27 - absdiff 1600.58 percdiff 81.1009 saved region 7656:11875 - 4 best edges are potentially confused break tig 815 into up to 3 pieces: 0 7156 unique (length 7156) 7156 12375 repeat (length 5219) 12375 40142 unique (length 27767) Creating Unitig 113315 Creating Unitig 113316 Creating Unitig 113317 For tig 815 unique region 0 7156 - 0/ 18 reads repeat/unique - unitig 113315 created. For tig 815 repeat region 7156 12375 - 30/ 0 reads repeat/unique - unitig 113316 created. For tig 815 unique region 12375 40142 - 0/ 44 reads repeat/unique - unitig 113317 created. Annotating repeats in reads for tig 821/113047. Annotated with 402 overlaps. Scan reads to discard spanned repeats. discard region 5878:7638 - contained in read 76454 692- 8488 thickest edges to the repeat regions: saved region 10761:14703 - closest 5' read 711313 ( +1586) 9175:14690 ( -13) saved region 10761:14703 - closest 3' read 699476 ( -2047) 12808:18805 ( +4102) search for confused edges: discard region 10761:14703 - no confusion in best edges Annotating repeats in reads for tig 826/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 827/113047. Annotated with 3733 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12618:37660 - closest 5' read 662055 ( +0) 12618:31502 ( -6158) saved region 12618:37660 - closest 3' read 655055 ( -5908) 18526:37660 ( +0) search for confused edges: tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 608890 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1681 erate 0.0211 score 1645.53 - absdiff 349.12 percdiff 19.1817 tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 608891 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1778 erate 0.0164 score 1748.84 - absdiff 245.81 percdiff 13.1329 tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 608892 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1721 erate 0.0258 score 1676.60 - absdiff 318.06 percdiff 17.3269 tig 827 read 61325 pos 9542-19658 IS confused by 3' edge to read 694003 - best edge read 655055 len 2067 erate 0.0350 score 1994.65 - alt edge len 1162 erate 0.0112 score 1148.99 - absdiff 845.67 percdiff 53.8019 tig 827 read 662055 pos 12618-31502 NOT confused by 3' edge to read 450260 - best edge read 608891 len 4768 erate 0.0069 score 4735.10 - alt edge len 1136 erate 0.0492 score 1080.11 - absdiff 3654.99 percdiff 125.7046 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 61325 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 1769 erate 0.0164 score 1739.99 - absdiff 3007.03 percdiff 92.7093 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 61326 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 1762 erate 0.0227 score 1722.00 - absdiff 3025.02 percdiff 93.5231 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 327057 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 712 erate 0.0677 score 663.80 - absdiff 4083.22 percdiff 150.9281 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 327065 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 799 erate 0.0518 score 757.61 - absdiff 3989.41 percdiff 144.9473 tig 827 read 608891 pos 27076-33695 IS confused by 5' edge to read 400613 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 4326 erate 0.0197 score 4240.78 - absdiff 506.24 percdiff 11.2651 tig 827 read 608891 pos 27076-33695 NOT confused by 5' edge to read 566316 - best edge read 662055 len 4780 erate 0.0069 score 4747.02 - alt edge len 1668 erate 0.0372 score 1605.95 - absdiff 3141.07 percdiff 98.8850 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 61325 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 1708 erate 0.0258 score 1663.93 - absdiff 4700.82 percdiff 117.1006 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 61326 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 1701 erate 0.0329 score 1645.04 - absdiff 4719.72 percdiff 117.8487 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 327065 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 746 erate 0.0571 score 703.40 - absdiff 5661.35 percdiff 160.1931 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 400613 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 4255 erate 0.0259 score 4144.80 - absdiff 2219.96 percdiff 42.2465 tig 827 read 608892 pos 27135-33792 NOT confused by 3' edge to read 566316 - best edge read 608891 len 6492 erate 0.0196 score 6364.76 - alt edge len 1608 erate 0.0435 score 1538.05 - absdiff 4826.70 percdiff 122.1516 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 61325 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 1659 erate 0.0211 score 1624.00 - absdiff 4791.74 percdiff 119.2015 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 61326 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 1652 erate 0.0297 score 1602.94 - absdiff 4812.80 percdiff 120.0398 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 327057 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 613 erate 0.0698 score 570.21 - absdiff 5845.52 percdiff 167.3509 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 327065 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 699 erate 0.0485 score 665.10 - absdiff 5750.64 percdiff 162.4282 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 400613 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 4206 erate 0.0252 score 4100.01 - absdiff 2315.73 percdiff 44.0430 tig 827 read 608890 pos 27179-33794 NOT confused by 3' edge to read 566316 - best edge read 608892 len 6534 erate 0.0181 score 6415.73 - alt edge len 1560 erate 0.0417 score 1494.95 - absdiff 4920.79 percdiff 124.4086 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 61325 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 1161 erate 0.0112 score 1148.00 - absdiff 4809.44 percdiff 135.3736 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 61326 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 1154 erate 0.0173 score 1134.04 - absdiff 4823.40 percdiff 136.0338 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 400613 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 3711 erate 0.0188 score 3641.23 - absdiff 2316.20 percdiff 48.2609 tig 827 read 694003 pos 27688-34261 NOT confused by 3' edge to read 566316 - best edge read 608890 len 6058 erate 0.0166 score 5957.44 - alt edge len 1060 erate 0.0321 score 1025.97 - absdiff 4931.46 percdiff 141.2336 saved region 12618:37660 - 5 best edges are potentially confused break tig 827 into up to 2 pieces: 0 12118 unique (length 12118) 12118 37660 repeat (length 25542) Creating Unitig 113318 Creating Unitig 113319 For tig 827 unique region 0 12118 - 0/ 23 reads repeat/unique - unitig 113318 created. For tig 827 repeat region 12118 37660 - 156/ 0 reads repeat/unique - unitig 113319 created. Annotating repeats in reads for tig 828/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 4617:5180 - contained in read 42695 1531- 6398 thickest edges to the repeat regions: saved region 1459:2540 - closest read 118234 ( +1459) 0:2540 ( +0) (contained) saved region 1459:2540 - closest 5' read 118234 ( +1459) 0:2540 ( +0) saved region 1459:2540 - closest 3' read 118234 ( +1459) 0:2540 ( +0) search for confused edges: tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71503 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 654 erate 0.0505 score 620.97 - absdiff 358.51 percdiff 44.8005 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71504 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 627 erate 0.0543 score 592.95 - absdiff 386.52 percdiff 49.1626 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71506 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 644 erate 0.0498 score 611.93 - absdiff 367.55 percdiff 46.1918 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 71509 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 650 erate 0.0524 score 615.94 - absdiff 363.54 percdiff 45.5728 tig 828 read 499280 pos 1488-5057 IS confused by 3' edge to read 651438 - best edge read 118234 len 1045 erate 0.0627 score 979.48 - alt edge len 1042 erate 0.0637 score 975.62 - absdiff 3.85 percdiff 0.3942 saved region 1459:2540 - 5 best edges are potentially confused break tig 828 into up to 3 pieces: 0 959 unique (length 959) 959 3040 repeat (length 2081) 3040 28275 unique (length 25235) Creating Unitig 113320 Creating Unitig 113321 For tig 828 unique region 0 959 - 0/ 1 reads repeat/unique - unitig 113320 created. For tig 828 repeat region 959 3040 - 0/ 0 repeat/unique reads - no new unitig created. For tig 828 unique region 3040 28275 - 0/ 41 reads repeat/unique - unitig 113321 created. Annotating repeats in reads for tig 829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 834/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 539:6106 - contained in read 24809 24- 6106 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 840/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 14042:15877 - contained in read 481261 11286- 17023 thickest edges to the repeat regions: saved region 15832:16872 - closest read 481261 ( +4546) 11286:17023 ( +151) (contained) saved region 15832:16872 - closest read 183415 ( +3489) 12343:17018 ( +146) (contained) saved region 15832:16872 - closest read 502367 ( +2070) 13762:16994 ( +122) (contained) saved region 15832:16872 - closest read 405453 ( +1296) 14536:16872 ( +0) (contained) saved region 15832:16872 - closest read 566273 ( +454) 15378:24808 ( +7936) (contained) saved region 15832:16872 - closest read 566272 ( +312) 15520:24835 ( +7963) (contained) saved region 15832:16872 - closest 5' read 566272 ( +312) 15520:24835 ( +7963) saved region 15832:16872 - closest 3' read 481261 ( +4546) 11286:17023 ( +151) search for confused edges: discard region 15832:16872 - no confusion in best edges Annotating repeats in reads for tig 841/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 10607:11334 - contained in read 191540 5716- 12565 discard region 11289:12676 - contained in read 675913 10609- 14150 discard region 13333:15339 - contained in read 48370 10618- 17836 discard region 26394:31658 - contained in read 571085 21830- 31658 thickest edges to the repeat regions: saved region 1995:7708 - closest 5' read 517946 ( +1994) 1:6181 ( -1527) saved region 1995:7708 - closest 3' read 504617 ( -1807) 3802:9721 ( +2013) search for confused edges: discard region 1995:7708 - no confusion in best edges Annotating repeats in reads for tig 842/113047. Annotated with 1092 overlaps. Scan reads to discard spanned repeats. discard region 36731:39836 - contained in read 432479 34443- 39836 thickest edges to the repeat regions: saved region 1922:26751 - closest 5' read 48619 ( +1709) 213:6844 (-19907) saved region 1922:26751 - closest 3' read 462656 (-15747) 17669:34401 ( +7650) search for confused edges: tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 75695 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 1208 erate 0.0498 score 1147.84 - absdiff 3297.44 percdiff 117.9105 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 75696 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 962 erate 0.0428 score 920.83 - absdiff 3524.46 percdiff 131.3599 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 130592 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3201 erate 0.0483 score 3046.39 - absdiff 1398.89 percdiff 37.3452 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 308216 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2565 erate 0.0520 score 2431.62 - absdiff 2013.66 percdiff 58.5631 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 408694 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2822 erate 0.0490 score 2683.72 - absdiff 1761.56 percdiff 49.4196 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 480132 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2417 erate 0.0634 score 2263.76 - absdiff 2181.52 percdiff 65.0322 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 487993 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 522 erate 0.0732 score 483.79 - absdiff 3961.49 percdiff 160.7399 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 487994 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 1449 erate 0.0587 score 1363.94 - absdiff 3081.34 percdiff 106.0843 tig 842 read 48618 pos 184-6836 NOT confused by 3' edge to read 496271 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 635 erate 0.0379 score 610.93 - absdiff 3834.35 percdiff 151.6687 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 515186 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3180 erate 0.0462 score 3033.08 - absdiff 1412.20 percdiff 37.7676 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 633370 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3217 erate 0.0562 score 3036.20 - absdiff 1409.08 percdiff 37.6684 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 642904 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 2830 erate 0.0543 score 2676.33 - absdiff 1768.95 percdiff 49.6784 tig 842 read 48618 pos 184-6836 IS confused by 3' edge to read 701901 - best edge read 414731 len 4705 erate 0.0552 score 4445.28 - alt edge len 3272 erate 0.0509 score 3105.46 - absdiff 1339.83 percdiff 35.4887 tig 842 read 201691 pos 2104-13238 NOT confused by 5' edge to read 480132 - best edge read 611584 len 8765 erate 0.0265 score 8532.73 - alt edge len 729 erate 0.0529 score 690.44 - absdiff 7842.29 percdiff 170.0564 tig 842 read 201691 pos 2104-13238 NOT confused by 5' edge to read 513091 - best edge read 611584 len 8765 erate 0.0265 score 8532.73 - alt edge len 592 erate 0.0647 score 553.70 - absdiff 7979.03 percdiff 175.6253 tig 842 read 201691 pos 2104-13238 NOT confused by 5' edge to read 642904 - best edge read 611584 len 8765 erate 0.0265 score 8532.73 - alt edge len 3654 erate 0.0473 score 3481.17 - absdiff 5051.56 percdiff 84.0953 tig 842 read 414731 pos 2184-9211 NOT confused by 5' edge to read 75695 - best edge read 414732 len 6919 erate 0.0178 score 6795.84 - alt edge len 3188 erate 0.0433 score 3049.96 - absdiff 3745.88 percdiff 76.0910 tig 842 read 414731 pos 2184-9211 NOT confused by 5' edge to read 75696 - best edge read 414732 len 6919 erate 0.0178 score 6795.84 - alt edge len 3190 erate 0.0391 score 3065.27 - absdiff 3730.57 percdiff 75.6623 tig 842 read 414731 pos 2184-9211 NOT confused by 5' edge to read 308216 - best edge read 414732 len 6919 erate 0.0178 score 6795.84 - alt edge len 4543 erate 0.0422 score 4351.29 - absdiff 2444.56 percdiff 43.8598 tig 842 read 414732 pos 2186-9193 NOT confused by 3' edge to read 75695 - best edge read 201691 len 6899 erate 0.0410 score 6616.14 - alt edge len 3190 erate 0.0382 score 3068.14 - absdiff 3548.00 percdiff 73.2733 tig 842 read 414732 pos 2186-9193 NOT confused by 3' edge to read 75696 - best edge read 201691 len 6899 erate 0.0410 score 6616.14 - alt edge len 3192 erate 0.0337 score 3084.43 - absdiff 3531.71 percdiff 72.8145 tig 842 read 414732 pos 2186-9193 NOT confused by 3' edge to read 308216 - best edge read 201691 len 6899 erate 0.0410 score 6616.14 - alt edge len 4544 erate 0.0378 score 4372.24 - absdiff 2243.90 percdiff 40.8414 tig 842 read 611584 pos 4304-14239 NOT confused by 5' edge to read 462656 - best edge read 201691 len 8722 erate 0.0265 score 8490.87 - alt edge len 2965 erate 0.0311 score 2872.79 - absdiff 5618.08 percdiff 98.8780 tig 842 read 611584 pos 4304-14239 NOT confused by 3' edge to read 480132 - best edge read 585139 len 9673 erate 0.0246 score 9435.04 - alt edge len 1752 erate 0.0303 score 1698.91 - absdiff 7736.13 percdiff 138.9646 tig 842 read 611584 pos 4304-14239 NOT confused by 3' edge to read 513091 - best edge read 585139 len 9673 erate 0.0246 score 9435.04 - alt edge len 1622 erate 0.0358 score 1563.93 - absdiff 7871.11 percdiff 143.1244 tig 842 read 611584 pos 4304-14239 NOT confused by 5' edge to read 560477 - best edge read 201691 len 8722 erate 0.0265 score 8490.87 - alt edge len 2912 erate 0.0543 score 2753.88 - absdiff 5736.99 percdiff 102.0386 tig 842 read 611584 pos 4304-14239 NOT confused by 3' edge to read 642904 - best edge read 585139 len 9673 erate 0.0246 score 9435.04 - alt edge len 4648 erate 0.0284 score 4516.00 - absdiff 4919.05 percdiff 70.5187 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 432007 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 1476 erate 0.0736 score 1367.37 - absdiff 8057.04 percdiff 149.3182 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 432009 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 1470 erate 0.0645 score 1375.18 - absdiff 8049.23 percdiff 149.0653 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 432010 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 1477 erate 0.0672 score 1377.75 - absdiff 8046.67 percdiff 148.9826 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 462656 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 3012 erate 0.0296 score 2922.84 - absdiff 6501.57 percdiff 105.3119 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 560477 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 2959 erate 0.0554 score 2795.07 - absdiff 6629.34 percdiff 108.5044 tig 842 read 585139 pos 4368-16267 NOT confused by 5' edge to read 565245 - best edge read 408694 len 8178 erate 0.0164 score 8043.88 - alt edge len 1658 erate 0.0261 score 1614.73 - absdiff 6429.15 percdiff 133.1280 tig 842 read 585139 pos 4368-16267 NOT confused by 3' edge to read 656360 - best edge read 611584 len 9674 erate 0.0258 score 9424.41 - alt edge len 867 erate 0.0636 score 811.86 - absdiff 8612.55 percdiff 168.2752 tig 842 read 408694 pos 7986-20270 NOT confused by 5' edge to read 48618 - best edge read 130592 len 11941 erate 0.0610 score 11212.60 - alt edge len 2839 erate 0.0490 score 2699.89 - absdiff 8512.71 percdiff 122.3751 tig 842 read 408694 pos 7986-20270 NOT confused by 5' edge to read 58734 - best edge read 130592 len 11941 erate 0.0610 score 11212.60 - alt edge len 4332 erate 0.0503 score 4114.10 - absdiff 7098.50 percdiff 92.6292 tig 842 read 408694 pos 7986-20270 NOT confused by 5' edge to read 560477 - best edge read 130592 len 11941 erate 0.0610 score 11212.60 - alt edge len 2704 erate 0.0571 score 2549.60 - absdiff 8663.00 percdiff 125.8955 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 48618 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 3166 erate 0.0483 score 3013.08 - absdiff 6564.46 percdiff 104.2754 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 58734 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 4605 erate 0.0328 score 4453.96 - absdiff 5123.59 percdiff 73.0298 tig 842 read 130592 pos 8326-20448 NOT confused by 5' edge to read 143031 - best edge read 408694 len 11621 erate 0.0634 score 10884.23 - alt edge len 3807 erate 0.0284 score 3698.88 - absdiff 7185.35 percdiff 98.5434 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 432007 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 1687 erate 0.0682 score 1571.95 - absdiff 8005.60 percdiff 143.6047 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 432009 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 1072 erate 0.0597 score 1008.00 - absdiff 8569.54 percdiff 161.9103 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 432010 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 1078 erate 0.0612 score 1012.03 - absdiff 8565.52 percdiff 161.7727 tig 842 read 130592 pos 8326-20448 NOT confused by 3' edge to read 560477 - best edge read 701901 len 9928 erate 0.0353 score 9577.54 - alt edge len 2791 erate 0.0535 score 2641.68 - absdiff 6935.86 percdiff 113.5237 tig 842 read 130592 pos 8326-20448 IS confused by 5' edge to read 630197 - best edge read 408694 len 11621 erate 0.0634 score 10884.23 - alt edge len 9758 erate 0.0234 score 9529.66 - absdiff 1354.57 percdiff 13.2710 tig 842 read 701901 pos 10362-21096 NOT confused by 5' edge to read 48618 - best edge read 515186 len 10531 erate 0.0231 score 10287.73 - alt edge len 3277 erate 0.0509 score 3110.20 - absdiff 7177.53 percdiff 107.1439 tig 842 read 701901 pos 10362-21096 NOT confused by 3' edge to read 308216 - best edge read 130592 len 9962 erate 0.0330 score 9633.25 - alt edge len 2609 erate 0.0433 score 2496.03 - absdiff 7137.22 percdiff 117.6858 tig 842 read 701901 pos 10362-21096 NOT confused by 5' edge to read 560477 - best edge read 515186 len 10531 erate 0.0231 score 10287.73 - alt edge len 3762 erate 0.0503 score 3572.77 - absdiff 6714.96 percdiff 96.8935 tig 842 read 701901 pos 10362-21096 IS confused by 3' edge to read 630197 - best edge read 130592 len 9962 erate 0.0330 score 9633.25 - alt edge len 7821 erate 0.0348 score 7548.83 - absdiff 2084.42 percdiff 24.2628 tig 842 read 515186 pos 10441-21563 IS confused by 5' edge to read 48618 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 3167 erate 0.0462 score 3020.68 - absdiff 940.24 percdiff 26.9347 tig 842 read 515186 pos 10441-21563 NOT confused by 3' edge to read 143031 - best edge read 701901 len 10512 erate 0.0231 score 10269.17 - alt edge len 1886 erate 0.0703 score 1753.41 - absdiff 8515.76 percdiff 141.6627 tig 842 read 515186 pos 10441-21563 NOT confused by 3' edge to read 308216 - best edge read 701901 len 10512 erate 0.0231 score 10269.17 - alt edge len 2625 erate 0.0422 score 2514.22 - absdiff 7754.95 percdiff 121.3284 tig 842 read 515186 pos 10441-21563 NOT confused by 5' edge to read 432009 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 1431 erate 0.0610 score 1343.71 - absdiff 2617.22 percdiff 98.6766 tig 842 read 515186 pos 10441-21563 NOT confused by 5' edge to read 432010 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 946 erate 0.0627 score 886.69 - absdiff 3074.24 percdiff 126.8352 tig 842 read 515186 pos 10441-21563 IS confused by 5' edge to read 560477 - best edge read 462656 len 4070 erate 0.0268 score 3960.92 - alt edge len 3771 erate 0.0439 score 3605.45 - absdiff 355.47 percdiff 9.3961 tig 842 read 515186 pos 10441-21563 NOT confused by 3' edge to read 630197 - best edge read 701901 len 10512 erate 0.0231 score 10269.17 - alt edge len 7810 erate 0.0339 score 7545.24 - absdiff 2723.93 percdiff 30.5812 saved region 1922:26751 - 11 best edges are potentially confused break tig 842 into up to 3 pieces: 0 1422 unique (length 1422) 1422 27251 repeat (length 25829) 27251 39836 unique (length 12585) Creating Unitig 113322 Creating Unitig 113323 Creating Unitig 113324 For tig 842 unique region 0 1422 - 0/ 5 reads repeat/unique - unitig 113322 created. For tig 842 repeat region 1422 27251 - 316/ 0 reads repeat/unique - unitig 113323 created. For tig 842 unique region 27251 39836 - 0/ 11 reads repeat/unique - unitig 113324 created. Annotating repeats in reads for tig 843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 844/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7096:7755 - contained in read 201991 2512- 8688 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 845/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 18427:17184 - contained in read 341467 12652- 18427 discard region 18497:17192 - contained in read 341467 12652- 18427 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 846/113047. Annotated with 535 overlaps. Scan reads to discard spanned repeats. discard region 8453:12158 - contained in read 720885 2257- 12158 thickest edges to the repeat regions: saved region 2257:8414 - closest read 720885 ( +0) 2257:12158 ( +3744) (contained) saved region 2257:8414 - closest 5' read 720885 ( +0) 2257:12158 ( +3744) saved region 2257:8414 - closest 3' read 720885 ( +0) 2257:12158 ( +3744) search for confused edges: tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 54168 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 2622 erate 0.0678 score 2444.23 - absdiff 560.83 percdiff 20.5835 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 54169 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 2628 erate 0.0630 score 2462.44 - absdiff 542.62 percdiff 19.8489 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 235956 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 1125 erate 0.0625 score 1054.69 - absdiff 1950.37 percdiff 96.0833 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 348930 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 2480 erate 0.0543 score 2345.34 - absdiff 659.72 percdiff 24.6606 tig 846 read 58024 pos 38-5592 IS confused by 3' edge to read 687136 - best edge read 720885 len 3225 erate 0.0682 score 3005.05 - alt edge len 1959 erate 0.0682 score 1825.40 - absdiff 1179.66 percdiff 48.8426 saved region 2257:8414 - 5 best edges are potentially confused break tig 846 into up to 3 pieces: 0 1757 unique (length 1757) 1757 8914 repeat (length 7157) 8914 12158 unique (length 3244) Creating Unitig 113325 Creating Unitig 113326 Creating Unitig 113327 For tig 846 unique region 0 1757 - 0/ 7 reads repeat/unique - unitig 113325 created. For tig 846 repeat region 1757 8914 - 63/ 0 reads repeat/unique - unitig 113327 created. For tig 846 unique region 8914 12158 - 0/ 10 reads repeat/unique - unitig 113326 created. Annotating repeats in reads for tig 848/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 5461:10770 - contained in read 443664 506- 13235 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 849/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 22124:22708 - contained in read 25013 18849- 24874 thickest edges to the repeat regions: saved region 10145:15341 - closest 5' read 235 ( +3185) 6960:14809 ( -532) saved region 10145:15341 - closest 3' read 401029 ( -3096) 13241:15341 ( +0) saved region 18846:19520 - closest read 481635 ( +5368) 13478:19520 ( +0) (contained) saved region 18846:19520 - closest 5' read 481635 ( +5368) 13478:19520 ( +0) saved region 18846:19520 - closest 3' read 481635 ( +5368) 13478:19520 ( +0) search for confused edges: tig 849 read 481641 pos 13505-19517 IS confused by 5' edge to read 97486 - best edge read 600853 len 657 erate 0.0639 score 615.02 - alt edge len 621 erate 0.0547 score 587.03 - absdiff 27.99 percdiff 4.6564 discard region 10145:15341 - no confusion in best edges saved region 18846:19520 - 1 best edges are potentially confused break tig 849 into up to 3 pieces: 0 18346 unique (length 18346) 18346 20020 repeat (length 1674) 20020 25925 unique (length 5905) Creating Unitig 113328 Creating Unitig 113329 For tig 849 unique region 0 18346 - 0/ 35 reads repeat/unique - unitig 113328 created. For tig 849 repeat region 18346 20020 - 0/ 0 repeat/unique reads - no new unitig created. For tig 849 unique region 20020 25925 - 0/ 9 reads repeat/unique - unitig 113329 created. Annotating repeats in reads for tig 850/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 13192:12485 - contained in read 239681 7248- 15905 thickest edges to the repeat regions: saved region 18229:24153 - closest 5' read 291597 ( +6011) 12218:18770 ( -5383) saved region 18229:24153 - closest 3' read 611260 ( -286) 18515:27113 ( +2960) search for confused edges: tig 850 read 444081 pos 18237-23868 IS confused by 5' edge to read 106944 - best edge read 718785 len 5575 erate 0.0079 score 5530.96 - alt edge len 4017 erate 0.0282 score 3903.72 - absdiff 1627.24 percdiff 34.4948 tig 850 read 444081 pos 18237-23868 IS confused by 5' edge to read 106945 - best edge read 718785 len 5575 erate 0.0079 score 5530.96 - alt edge len 4016 erate 0.0403 score 3854.16 - absdiff 1676.80 percdiff 35.7332 tig 850 read 444081 pos 18237-23868 NOT confused by 5' edge to read 493931 - best edge read 718785 len 5575 erate 0.0079 score 5530.96 - alt edge len 2780 erate 0.0347 score 2683.53 - absdiff 2847.42 percdiff 69.3268 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 20418 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 4049 erate 0.0354 score 3905.67 - absdiff 1641.17 percdiff 34.7245 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 61417 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 586 erate 0.0513 score 555.94 - absdiff 4990.89 percdiff 163.5616 tig 850 read 718785 pos 18258-24104 IS confused by 5' edge to read 106944 - best edge read 611260 len 5575 erate 0.0099 score 5519.81 - alt edge len 4260 erate 0.0331 score 4118.99 - absdiff 1400.81 percdiff 29.0661 tig 850 read 718785 pos 18258-24104 IS confused by 5' edge to read 106945 - best edge read 611260 len 5575 erate 0.0099 score 5519.81 - alt edge len 4259 erate 0.0440 score 4071.60 - absdiff 1448.20 percdiff 30.1979 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 142335 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 5403 erate 0.0228 score 5279.81 - absdiff 267.02 percdiff 4.9326 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 374368 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 1077 erate 0.0262 score 1048.78 - absdiff 4498.05 percdiff 136.3951 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 397829 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 4666 erate 0.0201 score 4572.21 - absdiff 974.62 percdiff 19.2630 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 397830 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 4670 erate 0.0170 score 4590.61 - absdiff 956.22 percdiff 18.8651 tig 850 read 718785 pos 18258-24104 IS confused by 3' edge to read 428455 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 5402 erate 0.0187 score 5300.98 - absdiff 245.85 percdiff 4.5327 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 443706 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 2010 erate 0.0678 score 1873.72 - absdiff 3673.11 percdiff 98.9983 tig 850 read 718785 pos 18258-24104 NOT confused by 5' edge to read 493931 - best edge read 611260 len 5575 erate 0.0099 score 5519.81 - alt edge len 3011 erate 0.0354 score 2904.41 - absdiff 2615.40 percdiff 62.0923 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 523870 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 2624 erate 0.0309 score 2542.92 - absdiff 3003.91 percdiff 74.2647 tig 850 read 718785 pos 18258-24104 NOT confused by 3' edge to read 685265 - best edge read 444081 len 5591 erate 0.0079 score 5546.83 - alt edge len 667 erate 0.0151 score 656.93 - absdiff 4889.90 percdiff 157.6432 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 20418 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 3779 erate 0.0342 score 3649.76 - absdiff 1849.26 percdiff 40.4263 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 142335 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 5137 erate 0.0211 score 5028.61 - absdiff 470.41 percdiff 8.9366 tig 850 read 611260 pos 18515-27113 NOT confused by 5' edge to read 374368 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 834 erate 0.0242 score 813.82 - absdiff 4685.20 percdiff 148.4341 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 397829 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 4397 erate 0.0196 score 4310.82 - absdiff 1188.20 percdiff 24.2246 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 397830 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 4402 erate 0.0164 score 4329.81 - absdiff 1169.21 percdiff 23.7914 tig 850 read 611260 pos 18515-27113 IS confused by 5' edge to read 428455 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 5136 erate 0.0166 score 5050.74 - absdiff 448.27 percdiff 8.4983 tig 850 read 611260 pos 18515-27113 NOT confused by 5' edge to read 443706 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 1756 erate 0.0667 score 1638.87 - absdiff 3860.14 percdiff 108.1591 tig 850 read 611260 pos 18515-27113 NOT confused by 5' edge to read 523870 - best edge read 718785 len 5554 erate 0.0099 score 5499.02 - alt edge len 2373 erate 0.0251 score 2313.44 - absdiff 3185.58 percdiff 81.5513 saved region 18229:24153 - 14 best edges are potentially confused break tig 850 into up to 3 pieces: 0 17729 unique (length 17729) 17729 24653 repeat (length 6924) 24653 27468 unique (length 2815) Creating Unitig 113330 Creating Unitig 113331 Creating Unitig 113332 For tig 850 unique region 0 17729 - 0/ 21 reads repeat/unique - unitig 113330 created. For tig 850 repeat region 17729 24653 - 16/ 0 reads repeat/unique - unitig 113331 created. For tig 850 unique region 24653 27468 - 0/ 6 reads repeat/unique - unitig 113332 created. Annotating repeats in reads for tig 851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 852/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 19081:19666 - contained in read 613151 18371- 21653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 855/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 4341:5456 - contained in read 374415 0- 7235 discard region 22889:25004 - contained in read 610871 13910- 28057 discard region 25599:27440 - contained in read 610871 13910- 28057 thickest edges to the repeat regions: saved region 9023:12530 - closest 5' read 553592 ( +3818) 5205:11718 ( -812) saved region 9023:12530 - closest 3' read 30443 ( -22) 9045:12530 ( +0) saved region 30315:33442 - closest read 690237 ( +94) 30221:33471 ( +29) (contained) saved region 30315:33442 - closest read 710533 ( +0) 30315:37625 ( +4183) (contained) saved region 30315:33442 - closest 5' read 710533 ( +0) 30315:37625 ( +4183) saved region 30315:33442 - closest 3' read 690237 ( +94) 30221:33471 ( +29) search for confused edges: tig 855 read 110609 pos 9170-18631 IS confused by 5' edge to read 205852 - best edge read 553592 len 2535 erate 0.0519 score 2403.43 - alt edge len 1069 erate 0.0433 score 1022.71 - absdiff 1380.72 percdiff 80.5991 tig 855 read 110609 pos 9170-18631 IS confused by 5' edge to read 205853 - best edge read 553592 len 2535 erate 0.0519 score 2403.43 - alt edge len 1101 erate 0.0320 score 1065.77 - absdiff 1337.67 percdiff 77.1166 tig 855 read 110609 pos 9170-18631 IS confused by 5' edge to read 211420 - best edge read 553592 len 2535 erate 0.0519 score 2403.43 - alt edge len 2159 erate 0.0396 score 2073.50 - absdiff 329.93 percdiff 14.7391 saved region 9023:12530 - 3 best edges are potentially confused discard region 30315:33442 - no confusion in best edges break tig 855 into up to 3 pieces: 0 8523 unique (length 8523) 8523 13030 repeat (length 4507) 13030 41835 unique (length 28805) Creating Unitig 113333 Creating Unitig 113334 Creating Unitig 113335 For tig 855 unique region 0 8523 - 0/ 13 reads repeat/unique - unitig 113333 created. For tig 855 repeat region 8523 13030 - 3/ 0 reads repeat/unique - unitig 113334 created. For tig 855 unique region 13030 41835 - 0/ 90 reads repeat/unique - unitig 113335 created. Annotating repeats in reads for tig 856/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 32435:31269 - contained in read 583280 29575- 41888 thickest edges to the repeat regions: saved region 29575:30487 - closest read 583280 ( +0) 29575:41888 (+11401) (contained) saved region 29575:30487 - closest 5' read 583280 ( +0) 29575:41888 (+11401) saved region 29575:30487 - closest 3' read 583280 ( +0) 29575:41888 (+11401) search for confused edges: discard region 29575:30487 - no confusion in best edges Annotating repeats in reads for tig 858/113047. Annotated with 1794 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8976 - closest 5' read 176884 ( +0) 0:6256 ( -2720) saved region 0:8976 - closest 3' read 102946 ( -2976) 2976:10018 ( +1042) search for confused edges: tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 191090 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2282 erate 0.0563 score 2153.52 - absdiff 3134.68 percdiff 84.2461 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 226532 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2457 erate 0.0525 score 2328.01 - absdiff 2960.20 percdiff 77.7342 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 226533 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 3581 erate 0.0497 score 3403.02 - absdiff 1885.18 percdiff 43.3813 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 285999 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 5198 erate 0.0321 score 5031.14 - absdiff 257.06 percdiff 4.9822 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 348202 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2996 erate 0.0240 score 2924.10 - absdiff 2364.11 percdiff 57.5749 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 460113 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 919 erate 0.0653 score 858.99 - absdiff 4429.22 percdiff 144.1053 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 493596 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 5245 erate 0.0311 score 5081.88 - absdiff 206.33 percdiff 3.9793 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 526515 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 759 erate 0.0540 score 718.01 - absdiff 4570.19 percdiff 152.1820 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 550681 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 3578 erate 0.0375 score 3443.83 - absdiff 1844.38 percdiff 42.2441 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 583971 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 4446 erate 0.0292 score 4316.18 - absdiff 972.03 percdiff 20.2414 tig 858 read 102943 pos 3012-10097 IS confused by 5' edge to read 653095 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 4922 erate 0.0374 score 4737.92 - absdiff 550.29 percdiff 10.9771 tig 858 read 102943 pos 3012-10097 NOT confused by 5' edge to read 702749 - best edge read 318714 len 5671 erate 0.0675 score 5288.21 - alt edge len 2725 erate 0.0672 score 2541.88 - absdiff 2746.33 percdiff 70.1481 saved region 0:8976 - 6 best edges are potentially confused break tig 858 into up to 2 pieces: 0 9476 repeat (length 9476) 9476 10920 unique (length 1444) Creating Unitig 113336 Creating Unitig 113337 For tig 858 repeat region 0 9476 - 73/ 0 reads repeat/unique - unitig 113336 created. For tig 858 unique region 9476 10920 - 0/ 3 reads repeat/unique - unitig 113337 created. Annotating repeats in reads for tig 860/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 457:1136 - contained in read 636960 0- 8778 discard region 6143:14489 - contained in read 169683 5372- 14489 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 865/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 13460:14076 - contained in read 302928 5834- 15639 thickest edges to the repeat regions: saved region 14509:22581 - closest read 74557 ( +951) 13558:22800 ( +219) (contained) saved region 14509:22581 - closest 5' read 74557 ( +951) 13558:22800 ( +219) saved region 14509:22581 - closest 3' read 74557 ( +951) 13558:22800 ( +219) search for confused edges: discard region 14509:22581 - no confusion in best edges Annotating repeats in reads for tig 868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 870/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15743:16786 - contained in read 613388 13184- 17317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 871/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3051:16078 - closest read 678302 ( +0) 3051:16690 ( +612) (contained) saved region 3051:16078 - closest 5' read 678302 ( +0) 3051:16690 ( +612) saved region 3051:16078 - closest 3' read 678302 ( +0) 3051:16690 ( +612) search for confused edges: tig 871 read 678301 pos 0-13615 NOT confused by 5' edge to read 181405 - best edge read 97682 len 5590 erate 0.0052 score 5560.93 - alt edge len 2454 erate 0.0147 score 2417.93 - absdiff 3143.01 percdiff 78.7833 tig 871 read 678301 pos 0-13615 NOT confused by 5' edge to read 181406 - best edge read 97682 len 5590 erate 0.0052 score 5560.93 - alt edge len 2254 erate 0.0040 score 2244.98 - absdiff 3315.95 percdiff 84.9599 tig 871 read 97682 pos 7462-14267 NOT confused by 3' edge to read 181405 - best edge read 154036 len 6250 erate 0.0043 score 6223.12 - alt edge len 3611 erate 0.0103 score 3573.81 - absdiff 2649.32 percdiff 54.0847 tig 871 read 97682 pos 7462-14267 NOT confused by 3' edge to read 181406 - best edge read 154036 len 6250 erate 0.0043 score 6223.12 - alt edge len 3411 erate 0.0041 score 3397.01 - absdiff 2826.11 percdiff 58.7540 tig 871 read 154036 pos 7953-15009 NOT confused by 3' edge to read 181405 - best edge read 154034 len 7001 erate 0.0064 score 6956.19 - alt edge len 4363 erate 0.0150 score 4297.56 - absdiff 2658.64 percdiff 47.2489 tig 871 read 154036 pos 7953-15009 NOT confused by 3' edge to read 181406 - best edge read 154034 len 7001 erate 0.0064 score 6956.19 - alt edge len 4163 erate 0.0065 score 4135.94 - absdiff 2820.25 percdiff 50.8514 tig 871 read 154034 pos 7957-15017 IS confused by 3' edge to read 181405 - best edge read 188463 len 4455 erate 0.0511 score 4227.35 - alt edge len 4372 erate 0.0142 score 4309.92 - absdiff 82.57 percdiff 1.9343 tig 871 read 154034 pos 7957-15017 IS confused by 3' edge to read 181406 - best edge read 188463 len 4455 erate 0.0511 score 4227.35 - alt edge len 4172 erate 0.0060 score 4146.97 - absdiff 80.38 percdiff 1.9197 saved region 3051:16078 - 2 best edges are potentially confused break tig 871 into up to 3 pieces: 0 2551 unique (length 2551) 2551 16578 repeat (length 14027) 16578 22947 unique (length 6369) Creating Unitig 113338 Creating Unitig 113339 Creating Unitig 113340 For tig 871 unique region 0 2551 - 0/ 1 reads repeat/unique - unitig 113338 created. For tig 871 repeat region 2551 16578 - 32/ 0 reads repeat/unique - unitig 113340 created. For tig 871 unique region 16578 22947 - 0/ 10 reads repeat/unique - unitig 113339 created. Annotating repeats in reads for tig 872/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6688:7222 - closest read 307432 ( +6635) 53:7222 ( +0) (contained) saved region 6688:7222 - closest read 17986 ( +495) 6193:15213 ( +7991) (contained) saved region 6688:7222 - closest read 17983 ( +490) 6198:15278 ( +8056) (contained) saved region 6688:7222 - closest read 17984 ( +476) 6212:15317 ( +8095) (contained) saved region 6688:7222 - closest read 17985 ( +396) 6292:15330 ( +8108) (contained) saved region 6688:7222 - closest 5' read 17985 ( +396) 6292:15330 ( +8108) saved region 6688:7222 - closest 3' read 307432 ( +6635) 53:7222 ( +0) saved region 19894:24205 - closest 5' read 8559 ( +5450) 14444:23925 ( -280) saved region 19894:24205 - closest 3' read 464837 ( -6) 19900:27432 ( +3227) search for confused edges: tig 872 read 8560 pos 14440-23921 IS confused by 5' edge to read 277604 - best edge read 464837 len 3968 erate 0.0561 score 3745.40 - alt edge len 3964 erate 0.0508 score 3762.63 - absdiff 17.23 percdiff 0.4591 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 63632 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3106 erate 0.0490 score 2953.81 - absdiff 858.61 percdiff 25.3792 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 213440 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 685 erate 0.0571 score 645.89 - absdiff 3166.53 percdiff 142.0509 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 262258 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 758 erate 0.0640 score 709.49 - absdiff 3102.92 percdiff 137.2398 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 278436 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3203 erate 0.0432 score 3064.63 - absdiff 747.78 percdiff 21.7472 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 570206 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 1426 erate 0.0295 score 1383.93 - absdiff 2428.48 percdiff 93.4687 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 570207 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 1427 erate 0.0239 score 1392.89 - absdiff 2419.52 percdiff 92.9635 tig 872 read 464837 pos 19900-27432 NOT confused by 5' edge to read 607259 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 1184 erate 0.0386 score 1138.30 - absdiff 2674.11 percdiff 108.0295 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 653358 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3893 erate 0.0511 score 3694.07 - absdiff 118.34 percdiff 3.1531 tig 872 read 464837 pos 19900-27432 IS confused by 5' edge to read 653359 - best edge read 8560 len 4039 erate 0.0561 score 3812.41 - alt edge len 3912 erate 0.0576 score 3686.67 - absdiff 125.74 percdiff 3.3536 discard region 6688:7222 - no confusion in best edges saved region 19894:24205 - 5 best edges are potentially confused break tig 872 into up to 3 pieces: 0 19394 unique (length 19394) 19394 24705 repeat (length 5311) 24705 29831 unique (length 5126) Creating Unitig 113341 Creating Unitig 113342 Creating Unitig 113343 For tig 872 unique region 0 19394 - 0/ 22 reads repeat/unique - unitig 113341 created. For tig 872 repeat region 19394 24705 - 3/ 0 reads repeat/unique - unitig 113343 created. For tig 872 unique region 24705 29831 - 0/ 8 reads repeat/unique - unitig 113342 created. Annotating repeats in reads for tig 874/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 7929:9071 - contained in read 125580 316- 9959 thickest edges to the repeat regions: saved region 13534:17694 - closest 5' read 327169 ( +1325) 12209:17180 ( -514) saved region 13534:17694 - closest 3' read 373778 ( -1016) 14550:20059 ( +2365) search for confused edges: tig 874 read 576522 pos 9055-16357 IS confused by 3' edge to read 314084 - best edge read 373778 len 1807 erate 0.0222 score 1766.88 - alt edge len 1635 erate 0.0284 score 1588.57 - absdiff 178.32 percdiff 10.6286 tig 874 read 576522 pos 9055-16357 IS confused by 3' edge to read 314087 - best edge read 373778 len 1807 erate 0.0222 score 1766.88 - alt edge len 1597 erate 0.0397 score 1533.60 - absdiff 233.29 percdiff 14.1364 saved region 13534:17694 - 2 best edges are potentially confused break tig 874 into up to 3 pieces: 0 13034 unique (length 13034) 13034 18194 repeat (length 5160) 18194 20080 unique (length 1886) Creating Unitig 113344 Creating Unitig 113345 Creating Unitig 113346 For tig 874 unique region 0 13034 - 0/ 24 reads repeat/unique - unitig 113344 created. For tig 874 repeat region 13034 18194 - 4/ 0 reads repeat/unique - unitig 113345 created. For tig 874 unique region 18194 20080 - 0/ 2 reads repeat/unique - unitig 113346 created. Annotating repeats in reads for tig 876/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 18820:21505 - contained in read 342623 17992- 23345 discard region 21692:22580 - contained in read 342623 17992- 23345 thickest edges to the repeat regions: saved region 12140:15553 - closest 5' read 501924 ( +5431) 6709:15552 ( -1) saved region 12140:15553 - closest 3' read 141001 ( -183) 12323:16529 ( +976) search for confused edges: tig 876 read 141001 pos 12323-16529 IS confused by 5' edge to read 35442 - best edge read 501924 len 3137 erate 0.0561 score 2961.01 - alt edge len 2450 erate 0.0480 score 2332.40 - absdiff 628.61 percdiff 23.7508 saved region 12140:15553 - 1 best edges are potentially confused break tig 876 into up to 3 pieces: 0 11640 unique (length 11640) 11640 16053 repeat (length 4413) 16053 23644 unique (length 7591) Creating Unitig 113347 Creating Unitig 113348 Creating Unitig 113349 For tig 876 unique region 0 11640 - 0/ 11 reads repeat/unique - unitig 113347 created. For tig 876 repeat region 11640 16053 - 25/ 0 reads repeat/unique - unitig 113348 created. For tig 876 unique region 16053 23644 - 0/ 14 reads repeat/unique - unitig 113349 created. Annotating repeats in reads for tig 877/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 12854:15792 - contained in read 489044 10669- 18296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 880/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 17427:17988 - contained in read 51820 13164- 20969 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 883/113047. Annotated with 162 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1648:18713 - closest 5' read 286976 ( +1648) 0:13492 ( -5221) saved region 1648:18713 - closest 3' read 475548 ( -6866) 8514:20333 ( +1620) search for confused edges: tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 364034 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 677 erate 0.0328 score 654.79 - absdiff 4078.03 percdiff 151.3853 tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 539728 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 883 erate 0.0475 score 841.06 - absdiff 3891.77 percdiff 139.6430 tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 539729 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 953 erate 0.0449 score 910.21 - absdiff 3822.62 percdiff 135.4808 tig 883 read 286671 pos 4970-14279 NOT confused by 5' edge to read 539730 - best edge read 570716 len 4824 erate 0.0189 score 4732.83 - alt edge len 899 erate 0.0346 score 867.89 - absdiff 3864.93 percdiff 138.0155 discard region 1648:18713 - no confusion in best edges Annotating repeats in reads for tig 884/113047. Annotated with 354 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16472:21954 - closest 5' read 102712 ( +0) 16472:21929 ( -25) saved region 16472:21954 - closest 3' read 537937 ( -805) 17277:21954 ( +0) search for confused edges: tig 884 read 627422 pos 12309-19807 IS confused by 3' edge to read 344098 - best edge read 379269 len 2468 erate 0.0556 score 2330.78 - alt edge len 2468 erate 0.0637 score 2310.79 - absdiff 19.99 percdiff 0.8614 tig 884 read 627422 pos 12309-19807 IS confused by 3' edge to read 676373 - best edge read 379269 len 2468 erate 0.0556 score 2330.78 - alt edge len 1431 erate 0.0657 score 1336.98 - absdiff 993.80 percdiff 54.1909 tig 884 read 627422 pos 12309-19807 IS confused by 3' edge to read 676376 - best edge read 379269 len 2468 erate 0.0556 score 2330.78 - alt edge len 1418 erate 0.0656 score 1324.98 - absdiff 1005.80 percdiff 55.0255 saved region 16472:21954 - 3 best edges are potentially confused break tig 884 into up to 3 pieces: 0 15972 unique (length 15972) 15972 22454 repeat (length 6482) 22454 26399 unique (length 3945) Creating Unitig 113350 Creating Unitig 113351 Creating Unitig 113352 For tig 884 unique region 0 15972 - 0/ 29 reads repeat/unique - unitig 113350 created. For tig 884 repeat region 15972 22454 - 26/ 0 reads repeat/unique - unitig 113351 created. For tig 884 unique region 22454 26399 - 0/ 10 reads repeat/unique - unitig 113352 created. Annotating repeats in reads for tig 888/113047. Annotated with 173 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2280:9057 - closest 5' read 460958 ( +2280) 0:8944 ( -113) saved region 2280:9057 - closest 3' read 488833 ( -1433) 3713:9057 ( +0) saved region 12499:19224 - closest 5' read 426563 ( +0) 12499:16994 ( -2230) saved region 12499:19224 - closest 3' read 100507 ( -107) 12606:20012 ( +788) saved region 19524:21138 - closest read 661258 ( +418) 19106:28120 ( +6982) (contained) saved region 19524:21138 - closest read 661257 ( +311) 19213:30070 ( +8932) (contained) saved region 19524:21138 - closest read 538263 ( +11) 19513:21204 ( +66) (contained) saved region 19524:21138 - closest read 372854 ( +0) 19524:26806 ( +5668) (contained) saved region 19524:21138 - closest 5' read 661257 ( +311) 19213:30070 ( +8932) saved region 19524:21138 - closest 3' read 661258 ( +418) 19106:28120 ( +6982) saved region 25639:29995 - closest read 661257 ( +6426) 19213:30070 ( +75) (contained) saved region 25639:29995 - closest 5' read 661257 ( +6426) 19213:30070 ( +75) saved region 25639:29995 - closest 3' read 661257 ( +6426) 19213:30070 ( +75) search for confused edges: tig 888 read 292626 pos 4087-13944 NOT confused by 5' edge to read 276176 - best edge read 460958 len 4856 erate 0.0226 score 4746.25 - alt edge len 2147 erate 0.0103 score 2124.89 - absdiff 2621.37 percdiff 76.3008 tig 888 read 292627 pos 9051-14122 IS confused by 5' edge to read 619821 - best edge read 97208 len 1591 erate 0.0704 score 1478.99 - alt edge len 1585 erate 0.0394 score 1522.55 - absdiff 43.56 percdiff 2.9023 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 9014 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 578 erate 0.0519 score 548.00 - absdiff 939.36 percdiff 92.3038 tig 888 read 97208 pos 12518-18563 NOT confused by 5' edge to read 29246 - best edge read 326307 len 5757 erate 0.0303 score 5582.56 - alt edge len 680 erate 0.0312 score 658.78 - absdiff 4923.78 percdiff 157.7794 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 66401 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 837 erate 0.0253 score 815.82 - absdiff 671.54 percdiff 58.3137 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 66402 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 597 erate 0.0603 score 561.00 - absdiff 926.36 percdiff 90.4488 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 309402 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1314 erate 0.0431 score 1257.37 - absdiff 229.99 percdiff 16.7589 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 309406 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1311 erate 0.0465 score 1250.04 - absdiff 237.32 percdiff 17.3392 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 411741 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1139 erate 0.0579 score 1073.05 - absdiff 414.31 percdiff 32.3626 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 517093 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 1173 erate 0.0451 score 1120.10 - absdiff 367.26 percdiff 28.1701 tig 888 read 97208 pos 12518-18563 IS confused by 3' edge to read 628694 - best edge read 292627 len 1600 erate 0.0704 score 1487.36 - alt edge len 978 erate 0.0423 score 936.63 - absdiff 550.73 percdiff 45.4399 tig 888 read 326307 pos 12747-19728 NOT confused by 5' edge to read 66401 - best edge read 97208 len 5790 erate 0.0303 score 5614.56 - alt edge len 598 erate 0.0321 score 578.80 - absdiff 5035.76 percdiff 162.6178 tig 888 read 326307 pos 12747-19728 NOT confused by 5' edge to read 309402 - best edge read 97208 len 5790 erate 0.0303 score 5614.56 - alt edge len 1078 erate 0.0584 score 1015.04 - absdiff 4599.52 percdiff 138.7569 tig 888 read 326307 pos 12747-19728 NOT confused by 5' edge to read 309406 - best edge read 97208 len 5790 erate 0.0303 score 5614.56 - alt edge len 1075 erate 0.0645 score 1005.66 - absdiff 4608.90 percdiff 139.2370 discard region 2280:9057 - no confusion in best edges saved region 12499:19224 - 9 best edges are potentially confused discard region 19524:21138 - no confusion in best edges discard region 25639:29995 - no confusion in best edges break tig 888 into up to 3 pieces: 0 11999 unique (length 11999) 11999 19724 repeat (length 7725) 19724 36687 unique (length 16963) Creating Unitig 113353 Creating Unitig 113354 Creating Unitig 113355 For tig 888 unique region 0 11999 - 0/ 26 reads repeat/unique - unitig 113353 created. For tig 888 repeat region 11999 19724 - 15/ 0 reads repeat/unique - unitig 113354 created. For tig 888 unique region 19724 36687 - 0/ 33 reads repeat/unique - unitig 113355 created. Annotating repeats in reads for tig 890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 891/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 895/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 28203:30075 - contained in read 564717 21981- 30606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 897/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5643:13484 - closest read 675102 ( +395) 5248:16755 ( +3271) (contained) saved region 5643:13484 - closest 5' read 675102 ( +395) 5248:16755 ( +3271) saved region 5643:13484 - closest 3' read 675102 ( +395) 5248:16755 ( +3271) search for confused edges: discard region 5643:13484 - no confusion in best edges Annotating repeats in reads for tig 901/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 21278:22507 - contained in read 132454 12586- 23223 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 903/113047. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 1662:0 - contained in read 210128 0- 4815 thickest edges to the repeat regions: saved region 1797:11898 - closest 5' read 307587 ( +1167) 630:7369 ( -4529) saved region 1797:11898 - closest 3' read 538463 ( -2294) 4091:12152 ( +254) search for confused edges: discard region 1797:11898 - no confusion in best edges Annotating repeats in reads for tig 906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 907/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2433:1694 - contained in read 216085 0- 8597 discard region 3610:6275 - contained in read 216085 0- 8597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 909/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 20650:18654 - contained in read 108700 15051- 20965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 911/113047. Annotated with 790 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:21705 - closest 5' read 2168 ( +0) 0:8066 (-13639) saved region 0:21705 - closest 3' read 692170 (-13346) 13346:21705 ( +0) search for confused edges: tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 77608 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 1985 erate 0.0338 score 1917.91 - absdiff 867.96 percdiff 36.9047 tig 911 read 451900 pos 3157-9948 IS confused by 3' edge to read 228932 - best edge read 2168 len 4442 erate 0.0279 score 4318.07 - alt edge len 3984 erate 0.0168 score 3917.07 - absdiff 401.00 percdiff 9.7387 tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 247359 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 1343 erate 0.0240 score 1310.77 - absdiff 1475.09 percdiff 72.0150 tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 347885 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 1897 erate 0.0300 score 1840.09 - absdiff 945.77 percdiff 40.8899 tig 911 read 451900 pos 3157-9948 NOT confused by 3' edge to read 364107 - best edge read 2168 len 4442 erate 0.0279 score 4318.07 - alt edge len 2036 erate 0.0222 score 1990.80 - absdiff 2327.27 percdiff 73.7776 tig 911 read 451900 pos 3157-9948 IS confused by 5' edge to read 493642 - best edge read 285941 len 2889 erate 0.0357 score 2785.86 - alt edge len 708 erate 0.0141 score 698.02 - absdiff 2087.85 percdiff 119.8575 saved region 0:21705 - 5 best edges are potentially confused Annotating repeats in reads for tig 914/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 14934:17198 - contained in read 57512 11232- 17198 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 919/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1724:872 - contained in read 342229 0- 5821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 921/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 924/113047. Annotated with 256 overlaps. Scan reads to discard spanned repeats. discard region 25225:27522 - contained in read 544929 22305- 27522 thickest edges to the repeat regions: saved region 22183:23910 - closest 5' read 688385 ( +8182) 14001:23680 ( -230) saved region 22183:23910 - closest 3' read 544929 ( -122) 22305:27522 ( +3612) search for confused edges: tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 14907 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 590 erate 0.0475 score 561.98 - absdiff 666.06 percdiff 74.4195 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 90741 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 883 erate 0.0589 score 830.99 - absdiff 397.04 percdiff 38.5659 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 272001 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 1288 erate 0.0691 score 1199.00 - absdiff 29.03 percdiff 2.3924 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 441438 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 1301 erate 0.0576 score 1226.06 - absdiff 1.97 percdiff 0.1605 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 532508 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 603 erate 0.0663 score 563.02 - absdiff 665.01 percdiff 74.2592 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 550995 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 1050 erate 0.0743 score 971.99 - absdiff 256.05 percdiff 23.2768 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 707181 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 597 erate 0.0720 score 554.02 - absdiff 674.02 percdiff 75.6451 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 707183 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 596 erate 0.0604 score 560.00 - absdiff 668.03 percdiff 74.7223 tig 924 read 534890 pos 11863-23606 IS confused by 3' edge to read 707185 - best edge read 544929 len 1306 erate 0.0597 score 1228.03 - alt edge len 594 erate 0.0640 score 555.98 - absdiff 672.05 percdiff 75.3410 saved region 22183:23910 - 9 best edges are potentially confused break tig 924 into up to 3 pieces: 0 21683 unique (length 21683) 21683 24410 repeat (length 2727) 24410 27522 unique (length 3112) Creating Unitig 113356 Creating Unitig 113357 For tig 924 unique region 0 21683 - 0/ 32 reads repeat/unique - unitig 113356 created. For tig 924 repeat region 21683 24410 - 0/ 0 repeat/unique reads - no new unitig created. For tig 924 unique region 24410 27522 - 0/ 1 reads repeat/unique - unitig 113357 created. Annotating repeats in reads for tig 925/113047. Annotated with 418 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2886:24072 - closest 5' read 583945 ( +1916) 970:7266 (-16806) saved region 2886:24072 - closest 3' read 196129 (-15100) 17986:24072 ( +0) saved region 30091:38851 - closest 5' read 648908 ( +5928) 24163:38035 ( -816) saved region 30091:38851 - closest 3' read 38255 ( -1146) 31237:40386 ( +1535) search for confused edges: tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 85597 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 1587 erate 0.0690 score 1477.50 - absdiff 11857.22 percdiff 160.1006 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 107677 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 2121 erate 0.0573 score 1999.47 - absdiff 11335.25 percdiff 147.8429 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 107678 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 2110 erate 0.0605 score 1982.35 - absdiff 11352.37 percdiff 148.2317 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 170875 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 1134 erate 0.0697 score 1054.96 - absdiff 12279.75 percdiff 170.6745 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 218492 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 5819 erate 0.0569 score 5487.90 - absdiff 7846.82 percdiff 83.3765 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 218495 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 5820 erate 0.0572 score 5487.10 - absdiff 7847.62 percdiff 83.3886 tig 925 read 479738 pos 2888-23922 NOT confused by 3' edge to read 446469 - best edge read 625829 len 14204 erate 0.0612 score 13334.72 - alt edge len 2602 erate 0.0486 score 2475.54 - absdiff 10859.17 percdiff 137.3687 tig 925 read 625831 pos 3021-11035 NOT confused by 3' edge to read 161542 - best edge read 625829 len 7804 erate 0.0440 score 7460.62 - alt edge len 1044 erate 0.0393 score 1002.97 - absdiff 6457.65 percdiff 152.5984 tig 925 read 625831 pos 3021-11035 IS confused by 5' edge to read 381770 - best edge read 583945 len 4191 erate 0.0721 score 3888.83 - alt edge len 4607 erate 0.0641 score 4311.69 - absdiff 422.86 percdiff 10.3131 tig 925 read 625831 pos 3021-11035 IS confused by 5' edge to read 446469 - best edge read 583945 len 4191 erate 0.0721 score 3888.83 - alt edge len 2836 erate 0.0719 score 2632.09 - absdiff 1256.74 percdiff 38.5448 tig 925 read 625831 pos 3021-11035 NOT confused by 3' edge to read 622279 - best edge read 625829 len 7804 erate 0.0440 score 7460.62 - alt edge len 966 erate 0.0714 score 897.03 - absdiff 6563.60 percdiff 157.0680 tig 925 read 625829 pos 3119-17343 NOT confused by 5' edge to read 381770 - best edge read 625831 len 7799 erate 0.0440 score 7455.84 - alt edge len 4536 erate 0.0494 score 4311.92 - absdiff 3143.92 percdiff 53.4328 tig 925 read 625829 pos 3119-17343 NOT confused by 5' edge to read 381773 - best edge read 625831 len 7799 erate 0.0440 score 7455.84 - alt edge len 4884 erate 0.0534 score 4623.19 - absdiff 2832.65 percdiff 46.9019 tig 925 read 387296 pos 19301-26900 IS confused by 3' edge to read 105942 - best edge read 479738 len 4596 erate 0.0620 score 4311.05 - alt edge len 3312 erate 0.0701 score 3079.83 - absdiff 1231.22 percdiff 33.3173 tig 925 read 387296 pos 19301-26900 IS confused by 3' edge to read 703587 - best edge read 479738 len 4596 erate 0.0620 score 4311.05 - alt edge len 3982 erate 0.0404 score 3821.13 - absdiff 489.92 percdiff 12.0489 tig 925 read 387296 pos 19301-26900 IS confused by 3' edge to read 703588 - best edge read 479738 len 4596 erate 0.0620 score 4311.05 - alt edge len 3980 erate 0.0489 score 3785.38 - absdiff 525.67 percdiff 12.9852 saved region 2886:24072 - 5 best edges are potentially confused discard region 30091:38851 - no confusion in best edges break tig 925 into up to 3 pieces: 0 2386 unique (length 2386) 2386 24572 repeat (length 22186) 24572 43877 unique (length 19305) Creating Unitig 113358 Creating Unitig 113359 Creating Unitig 113360 For tig 925 unique region 0 2386 - 0/ 2 reads repeat/unique - unitig 113358 created. For tig 925 repeat region 2386 24572 - 1024/ 0 reads repeat/unique - unitig 113359 created. For tig 925 unique region 24572 43877 - 0/ 30 reads repeat/unique - unitig 113360 created. Annotating repeats in reads for tig 926/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 14048:15570 - contained in read 496291 3607- 16752 thickest edges to the repeat regions: saved region 17377:23576 - closest 5' read 530395 ( +3451) 13926:20044 ( -3532) saved region 17377:23576 - closest 3' read 654337 ( -6) 17383:24877 ( +1301) search for confused edges: discard region 17377:23576 - no confusion in best edges Annotating repeats in reads for tig 928/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 17344:17924 - contained in read 603458 11775- 19714 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 929/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 933/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3165:3819 - contained in read 344969 0- 5705 discard region 9491:10724 - contained in read 640481 8694- 14856 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 936/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 16229:22775 - contained in read 309211 14970- 22775 thickest edges to the repeat regions: saved region 6122:6961 - closest read 277806 ( +5355) 767:7217 ( +256) (contained) saved region 6122:6961 - closest read 277804 ( +5352) 770:7196 ( +235) (contained) saved region 6122:6961 - closest read 277802 ( +5349) 773:7171 ( +210) (contained) saved region 6122:6961 - closest read 427091 ( +0) 6122:10263 ( +3302) (contained) saved region 6122:6961 - closest 5' read 427091 ( +0) 6122:10263 ( +3302) saved region 6122:6961 - closest 3' read 277806 ( +5355) 767:7217 ( +256) search for confused edges: discard region 6122:6961 - no confusion in best edges Annotating repeats in reads for tig 940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 941/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10546:11550 - contained in read 301204 8014- 16214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 942/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 2697:1714 - contained in read 395503 0- 5899 discard region 4300:4957 - contained in read 395503 0- 5899 discard region 5020:6351 - contained in read 355716 15- 7133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 944/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 949/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 950/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 0:5756 - contained in read 468260 0- 6802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 951/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 13513:14063 - contained in read 530092 6719- 17924 thickest edges to the repeat regions: saved region 4426:10825 - closest 5' read 488196 ( +404) 4022:10540 ( -285) saved region 4426:10825 - closest 3' read 401440 ( -1305) 5731:13340 ( +2515) search for confused edges: tig 951 read 530092 pos 6719-17924 IS confused by 3' edge to read 114255 - best edge read 488196 len 3758 erate 0.0327 score 3635.11 - alt edge len 2141 erate 0.0687 score 1993.91 - absdiff 1641.20 percdiff 58.3120 tig 951 read 530092 pos 6719-17924 NOT confused by 3' edge to read 235402 - best edge read 488196 len 3758 erate 0.0327 score 3635.11 - alt edge len 1032 erate 0.0572 score 972.97 - absdiff 2662.14 percdiff 115.5424 saved region 4426:10825 - 1 best edges are potentially confused break tig 951 into up to 3 pieces: 0 3926 unique (length 3926) 3926 11325 repeat (length 7399) 11325 33099 unique (length 21774) Creating Unitig 113361 Creating Unitig 113362 Creating Unitig 113363 For tig 951 unique region 0 3926 - 0/ 9 reads repeat/unique - unitig 113361 created. For tig 951 repeat region 3926 11325 - 27/ 0 reads repeat/unique - unitig 113362 created. For tig 951 unique region 11325 33099 - 0/ 19 reads repeat/unique - unitig 113363 created. Annotating repeats in reads for tig 953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 959/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1497:6152 - contained in read 538888 0- 6889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 962/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 971/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5901:7494 - closest 5' read 367972 ( +5845) 56:6505 ( -989) saved region 5901:7494 - closest 3' read 602373 ( -36) 5937:10716 ( +3222) search for confused edges: discard region 5901:7494 - no confusion in best edges Annotating repeats in reads for tig 973/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 974/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19420:20017 - closest read 195897 ( +6290) 13130:20020 ( +3) (contained) saved region 19420:20017 - closest read 195896 ( +6289) 13131:20037 ( +20) (contained) saved region 19420:20017 - closest read 195899 ( +6256) 13164:20035 ( +18) (contained) saved region 19420:20017 - closest read 195898 ( +6226) 13194:20037 ( +20) (contained) saved region 19420:20017 - closest read 250058 ( +5540) 13880:20017 ( +0) (contained) saved region 19420:20017 - closest read 250060 ( +5539) 13881:20064 ( +47) (contained) saved region 19420:20017 - closest read 250059 ( +5534) 13886:20067 ( +50) (contained) saved region 19420:20017 - closest read 250057 ( +5533) 13887:20069 ( +52) (contained) saved region 19420:20017 - closest read 250056 ( +5295) 14125:20069 ( +52) (contained) saved region 19420:20017 - closest read 195895 ( +4458) 14962:20031 ( +14) (contained) saved region 19420:20017 - closest 5' read 250057 ( +5533) 13887:20069 ( +52) saved region 19420:20017 - closest 3' read 195897 ( +6290) 13130:20020 ( +3) search for confused edges: discard region 19420:20017 - no confusion in best edges Annotating repeats in reads for tig 975/113047. Annotated with 365 overlaps. Scan reads to discard spanned repeats. discard region 10961:13165 - contained in read 536316 9884- 18632 thickest edges to the repeat regions: saved region 14793:18653 - closest 5' read 536318 ( +4817) 9976:18637 ( -16) saved region 14793:18653 - closest 3' read 597926 ( -1645) 16438:22862 ( +4209) search for confused edges: tig 975 read 597926 pos 16438-22862 IS confused by 3' edge to read 34443 - best edge read 536320 len 2181 erate 0.0618 score 2046.21 - alt edge len 820 erate 0.0441 score 783.84 - absdiff 1262.38 percdiff 89.2122 tig 975 read 597926 pos 16438-22862 IS confused by 3' edge to read 143860 - best edge read 536320 len 2181 erate 0.0618 score 2046.21 - alt edge len 578 erate 0.0473 score 550.66 - absdiff 1495.55 percdiff 115.1810 tig 975 read 597926 pos 16438-22862 IS confused by 3' edge to read 557566 - best edge read 536320 len 2181 erate 0.0618 score 2046.21 - alt edge len 840 erate 0.0578 score 791.45 - absdiff 1254.77 percdiff 88.4366 saved region 14793:18653 - 3 best edges are potentially confused break tig 975 into up to 3 pieces: 0 14293 unique (length 14293) 14293 19153 repeat (length 4860) 19153 28017 unique (length 8864) Creating Unitig 113364 Creating Unitig 113365 Creating Unitig 113366 For tig 975 unique region 0 14293 - 0/ 20 reads repeat/unique - unitig 113364 created. For tig 975 repeat region 14293 19153 - 8/ 0 reads repeat/unique - unitig 113365 created. For tig 975 unique region 19153 28017 - 0/ 21 reads repeat/unique - unitig 113366 created. Annotating repeats in reads for tig 984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 988/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 33157:34248 - contained in read 701939 23803- 35203 thickest edges to the repeat regions: saved region 2879:6004 - closest 5' read 482488 ( +2879) 0:5982 ( -22) saved region 2879:6004 - closest 3' read 450309 ( -32) 2911:6004 ( +0) search for confused edges: tig 988 read 277070 pos 2944-17908 NOT confused by 5' edge to read 375286 - best edge read 482488 len 2936 erate 0.0636 score 2749.27 - alt edge len 523 erate 0.0325 score 506.00 - absdiff 2243.27 percdiff 137.8236 discard region 2879:6004 - no confusion in best edges Annotating repeats in reads for tig 992/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 1261:4817 - contained in read 488631 0- 5797 discard region 5594:8411 - contained in read 78703 2367- 8411 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 999/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1013:0 - contained in read 461470 0- 4703 discard region 22893:24365 - contained in read 54311 17439- 29070 thickest edges to the repeat regions: saved region 12497:13294 - closest read 156391 ( +0) 12497:18334 ( +5040) (contained) saved region 12497:13294 - closest 5' read 156391 ( +0) 12497:18334 ( +5040) saved region 12497:13294 - closest 3' read 156391 ( +0) 12497:18334 ( +5040) search for confused edges: tig 999 read 57950 pos 4195-13218 IS confused by 5' edge to read 339946 - best edge read 156390 len 715 erate 0.0563 score 674.75 - alt edge len 522 erate 0.0665 score 487.29 - absdiff 187.46 percdiff 32.2639 tig 999 read 156390 pos 12500-18355 IS confused by 3' edge to read 602687 - best edge read 57950 len 723 erate 0.0563 score 682.30 - alt edge len 582 erate 0.0450 score 555.81 - absdiff 126.49 percdiff 20.4320 saved region 12497:13294 - 2 best edges are potentially confused break tig 999 into up to 3 pieces: 0 11997 unique (length 11997) 11997 13794 repeat (length 1797) 13794 35949 unique (length 22155) Creating Unitig 113367 Creating Unitig 113368 For tig 999 unique region 0 11997 - 0/ 8 reads repeat/unique - unitig 113367 created. For tig 999 repeat region 11997 13794 - 0/ 0 repeat/unique reads - no new unitig created. For tig 999 unique region 13794 35949 - 0/ 33 reads repeat/unique - unitig 113368 created. Annotating repeats in reads for tig 1000/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 22434:20758 - contained in read 272836 16840- 22682 thickest edges to the repeat regions: saved region 6182:7247 - closest 5' read 35193 ( +114) 6068:7225 ( -22) saved region 6182:7247 - closest 3' read 4256 ( -52) 6234:15239 ( +7992) search for confused edges: discard region 6182:7247 - no confusion in best edges Annotating repeats in reads for tig 1001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1003/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 10323:14365 - contained in read 547103 8395- 14365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1006/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2402:3655 - contained in read 607531 907- 6266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1008/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9934:10492 - contained in read 180962 3196- 11397 thickest edges to the repeat regions: saved region 15308:16352 - closest 5' read 274054 ( +5576) 9732:15887 ( -465) saved region 15308:16352 - closest 3' read 11531 ( -51) 15359:22543 ( +6191) search for confused edges: tig 1008 read 11533 pos 15367-22615 IS confused by 5' edge to read 441076 - best edge read 274058 len 536 erate 0.0636 score 501.91 - alt edge len 976 erate 0.0586 score 918.81 - absdiff 416.90 percdiff 58.6881 saved region 15308:16352 - 1 best edges are potentially confused break tig 1008 into up to 3 pieces: 0 14808 unique (length 14808) 14808 16852 repeat (length 2044) 16852 27269 unique (length 10417) Creating Unitig 113369 Creating Unitig 113370 For tig 1008 unique region 0 14808 - 0/ 26 reads repeat/unique - unitig 113369 created. For tig 1008 repeat region 14808 16852 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1008 unique region 16852 27269 - 0/ 12 reads repeat/unique - unitig 113370 created. Annotating repeats in reads for tig 1009/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 5114:5875 - contained in read 415720 0- 9524 discard region 16337:17330 - contained in read 392823 12379- 17477 thickest edges to the repeat regions: saved region 6914:15736 - closest 5' read 631186 ( +1786) 5128:14518 ( -1218) saved region 6914:15736 - closest 3' read 529067 ( -1402) 8316:15736 ( +0) search for confused edges: tig 1009 read 631186 pos 5128-14518 NOT confused by 5' edge to read 518860 - best edge read 585632 len 7164 erate 0.0142 score 7062.27 - alt edge len 1518 erate 0.0283 score 1475.04 - absdiff 5587.23 percdiff 130.8897 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 14630 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 842 erate 0.0590 score 792.32 - absdiff 6281.78 percdiff 159.7112 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 27008 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 4882 erate 0.0127 score 4820.00 - absdiff 2254.10 percdiff 37.9029 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 27010 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 4879 erate 0.0162 score 4799.96 - absdiff 2274.14 percdiff 38.3043 tig 1009 read 585632 pos 7421-15282 NOT confused by 3' edge to read 27011 - best edge read 631186 len 7176 erate 0.0142 score 7074.10 - alt edge len 4202 erate 0.0162 score 4133.93 - absdiff 2940.17 percdiff 52.4655 tig 1009 read 585632 pos 7421-15282 NOT confused by 5' edge to read 518860 - best edge read 585631 len 7798 erate 0.0077 score 7737.96 - alt edge len 2145 erate 0.0425 score 2053.84 - absdiff 5684.12 percdiff 116.0996 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 14630 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 837 erate 0.0554 score 790.63 - absdiff 6943.36 percdiff 162.9013 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 27008 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 4879 erate 0.0105 score 4827.77 - absdiff 2906.22 percdiff 46.2708 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 27010 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 4876 erate 0.0137 score 4809.20 - absdiff 2924.79 percdiff 46.6355 tig 1009 read 585631 pos 7424-15290 NOT confused by 5' edge to read 27011 - best edge read 585632 len 7794 erate 0.0077 score 7733.99 - alt edge len 4201 erate 0.0131 score 4145.97 - absdiff 3588.02 percdiff 60.4046 tig 1009 read 585631 pos 7424-15290 NOT confused by 3' edge to read 518860 - best edge read 188384 len 6176 erate 0.0532 score 5847.44 - alt edge len 2154 erate 0.0372 score 2073.87 - absdiff 3773.57 percdiff 95.2763 tig 1009 read 188384 pos 9147-16157 NOT confused by 3' edge to read 27008 - best edge read 585631 len 6036 erate 0.0552 score 5702.81 - alt edge len 3253 erate 0.0120 score 3213.96 - absdiff 2488.85 percdiff 55.8240 tig 1009 read 188384 pos 9147-16157 NOT confused by 3' edge to read 27010 - best edge read 585631 len 6036 erate 0.0552 score 5702.81 - alt edge len 3250 erate 0.0089 score 3221.07 - absdiff 2481.74 percdiff 55.6201 tig 1009 read 188384 pos 9147-16157 NOT confused by 3' edge to read 27011 - best edge read 585631 len 6036 erate 0.0552 score 5702.81 - alt edge len 2560 erate 0.0188 score 2511.87 - absdiff 3190.94 percdiff 77.6887 tig 1009 read 650435 pos 10247-17064 NOT confused by 3' edge to read 27008 - best edge read 188384 len 4594 erate 0.0179 score 4511.77 - alt edge len 932 erate 0.0225 score 911.03 - absdiff 3600.74 percdiff 132.8000 tig 1009 read 650435 pos 10247-17064 NOT confused by 3' edge to read 27010 - best edge read 188384 len 4594 erate 0.0179 score 4511.77 - alt edge len 929 erate 0.0194 score 910.98 - absdiff 3600.79 percdiff 132.8032 discard region 6914:15736 - no confusion in best edges Annotating repeats in reads for tig 1014/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:576 - contained in read 539728 0- 7216 discard region 6281:7287 - contained in read 539729 108- 7287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1018/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:1651 - contained in read 151071 0- 6253 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1019/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1027/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 42021:39601 - contained in read 121850 34352- 42021 thickest edges to the repeat regions: saved region 6626:7454 - closest read 342684 ( +5732) 894:7454 ( +0) (contained) saved region 6626:7454 - closest read 639148 ( +4) 6622:10985 ( +3531) (contained) saved region 6626:7454 - closest 5' read 639148 ( +4) 6622:10985 ( +3531) saved region 6626:7454 - closest 3' read 342684 ( +5732) 894:7454 ( +0) search for confused edges: discard region 6626:7454 - no confusion in best edges Annotating repeats in reads for tig 1032/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 17199:18078 - contained in read 142300 13496- 18816 thickest edges to the repeat regions: saved region 1574:4340 - closest 5' read 253647 ( +575) 999:4190 ( -150) saved region 1574:4340 - closest 3' read 145089 ( -180) 1754:8372 ( +4032) search for confused edges: tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 45498 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 820 erate 0.0676 score 764.57 - absdiff 1446.70 percdiff 97.2297 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 150241 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 792 erate 0.0660 score 739.73 - absdiff 1471.54 percdiff 99.7316 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 434330 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 511 erate 0.0573 score 481.72 - absdiff 1729.54 percdiff 128.4482 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 482939 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 1323 erate 0.0615 score 1241.64 - absdiff 969.63 percdiff 56.1631 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 676900 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 1798 erate 0.0536 score 1701.63 - absdiff 509.64 percdiff 26.0491 tig 1032 read 145088 pos 1801-8387 IS confused by 5' edge to read 713303 - best edge read 315940 len 2366 erate 0.0654 score 2211.26 - alt edge len 513 erate 0.0531 score 485.76 - absdiff 1725.50 percdiff 127.9562 saved region 1574:4340 - 6 best edges are potentially confused break tig 1032 into up to 3 pieces: 0 1074 unique (length 1074) 1074 4840 repeat (length 3766) 4840 30335 unique (length 25495) Creating Unitig 113371 Creating Unitig 113372 Creating Unitig 113373 For tig 1032 unique region 0 1074 - 0/ 4 reads repeat/unique - unitig 113371 created. For tig 1032 repeat region 1074 4840 - 1/ 0 reads repeat/unique - unitig 113373 created. For tig 1032 unique region 4840 30335 - 0/ 35 reads repeat/unique - unitig 113372 created. Annotating repeats in reads for tig 1033/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:3838 - contained in read 110878 0- 4509 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1045/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3517:5073 - closest 5' read 123946 ( +187) 3330:5035 ( -38) saved region 3517:5073 - closest 3' read 193156 ( -129) 3646:12757 ( +7684) saved region 10922:12738 - closest read 193156 ( +7276) 3646:12757 ( +19) (contained) saved region 10922:12738 - closest read 193155 ( +7272) 3650:12789 ( +51) (contained) saved region 10922:12738 - closest 5' read 193155 ( +7272) 3650:12789 ( +51) saved region 10922:12738 - closest 3' read 193156 ( +7276) 3646:12757 ( +19) search for confused edges: tig 1045 read 193156 pos 3646-12757 IS confused by 3' edge to read 672236 - best edge read 123946 len 1385 erate 0.0562 score 1307.16 - alt edge len 1266 erate 0.0545 score 1197.00 - absdiff 110.16 percdiff 8.7981 saved region 3517:5073 - 1 best edges are potentially confused discard region 10922:12738 - no confusion in best edges break tig 1045 into up to 3 pieces: 0 3017 unique (length 3017) 3017 5573 repeat (length 2556) 5573 38314 unique (length 32741) Creating Unitig 113374 Creating Unitig 113375 Creating Unitig 113376 For tig 1045 unique region 0 3017 - 0/ 2 reads repeat/unique - unitig 113374 created. For tig 1045 repeat region 3017 5573 - 5/ 0 reads repeat/unique - unitig 113375 created. For tig 1045 unique region 5573 38314 - 0/ 41 reads repeat/unique - unitig 113376 created. Annotating repeats in reads for tig 1047/113047. Annotated with 1962 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10846:12705 - closest 5' read 12814 ( +3671) 7175:12413 ( -292) saved region 10846:12705 - closest 3' read 311096 ( -276) 11122:16058 ( +3353) saved region 14051:31232 - closest 5' read 131139 ( +0) 14051:19390 (-11842) saved region 14051:31232 - closest 3' read 508197 (-11358) 25409:31232 ( +0) search for confused edges: tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 43882 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 1078 erate 0.0475 score 1026.80 - absdiff 402.73 percdiff 32.7912 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 109100 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 671 erate 0.0641 score 627.99 - absdiff 801.53 percdiff 77.9129 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 109102 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 654 erate 0.0619 score 613.52 - absdiff 816.01 percdiff 79.8815 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 275728 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 971 erate 0.0598 score 912.93 - absdiff 516.59 percdiff 44.1065 tig 1047 read 311096 pos 11122-16058 IS confused by 3' edge to read 339480 - best edge read 12814 len 1533 erate 0.0675 score 1429.52 - alt edge len 713 erate 0.0609 score 669.58 - absdiff 759.94 percdiff 72.4066 tig 1047 read 311096 pos 11122-16058 IS confused by 5' edge to read 32098 - best edge read 131139 len 1439 erate 0.0731 score 1333.81 - alt edge len 573 erate 0.0579 score 539.82 - absdiff 793.99 percdiff 84.7536 tig 1047 read 311096 pos 11122-16058 IS confused by 5' edge to read 709859 - best edge read 131139 len 1439 erate 0.0731 score 1333.81 - alt edge len 1182 erate 0.0647 score 1105.52 - absdiff 228.28 percdiff 18.7170 tig 1047 read 311096 pos 11122-16058 IS confused by 5' edge to read 709861 - best edge read 131139 len 1439 erate 0.0731 score 1333.81 - alt edge len 1180 erate 0.0596 score 1109.67 - absdiff 224.14 percdiff 18.3457 tig 1047 read 648139 pos 15459-21162 IS confused by 5' edge to read 20505 - best edge read 648141 len 5437 erate 0.0424 score 5206.47 - alt edge len 3445 erate 0.0570 score 3248.63 - absdiff 1957.84 percdiff 46.3113 tig 1047 read 648139 pos 15459-21162 IS confused by 3' edge to read 280057 - best edge read 534561 len 1836 erate 0.0671 score 1712.80 - alt edge len 1288 erate 0.0637 score 1205.95 - absdiff 506.85 percdiff 34.7305 tig 1047 read 648141 pos 15525-21060 IS confused by 5' edge to read 20505 - best edge read 131139 len 3738 erate 0.0559 score 3529.05 - alt edge len 3436 erate 0.0574 score 3238.77 - absdiff 290.27 percdiff 8.5780 saved region 10846:12705 - 5 best edges are potentially confused saved region 14051:31232 - 6 best edges are potentially confused break tig 1047 into up to 4 pieces: 0 10346 unique (length 10346) 10346 13205 repeat (length 2859) 13205 13551 unique (length 346) 13551 31232 repeat (length 17681) Creating Unitig 113377 Creating Unitig 113378 Creating Unitig 113379 Creating Unitig 113380 For tig 1047 unique region 0 10346 - 0/ 13 reads repeat/unique - unitig 113377 created. For tig 1047 repeat region 10346 13205 - 1/ 0 reads repeat/unique - unitig 113378 created. For tig 1047 unique region 13205 13551 - 0/ 4 reads repeat/unique - unitig 113379 created. For tig 1047 repeat region 13551 31232 - 70/ 0 reads repeat/unique - unitig 113380 created. Annotating repeats in reads for tig 1052/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6486:9748 - contained in read 278050 4758- 10769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1057/113047. Annotated with 147 overlaps. Scan reads to discard spanned repeats. discard region 6935:7777 - contained in read 673354 2498- 12787 discard region 13206:16277 - contained in read 669683 11178- 18749 discard region 18828:21261 - contained in read 524970 14217- 27611 discard region 29478:34141 - contained in read 600347 27370- 40522 thickest edges to the repeat regions: saved region 38362:40607 - closest read 268533 ( +0) 38362:46062 ( +5455) (contained) saved region 38362:40607 - closest 5' read 268533 ( +0) 38362:46062 ( +5455) saved region 38362:40607 - closest 3' read 268533 ( +0) 38362:46062 ( +5455) saved region 44696:48420 - closest read 575114 ( +3795) 40901:48420 ( +0) (contained) saved region 44696:48420 - closest read 144995 ( +0) 44696:50196 ( +1776) (contained) saved region 44696:48420 - closest 5' read 144995 ( +0) 44696:50196 ( +1776) saved region 44696:48420 - closest 3' read 575114 ( +3795) 40901:48420 ( +0) search for confused edges: tig 1057 read 144991 pos 45344-50884 IS confused by 3' edge to read 302167 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 2161 erate 0.0580 score 2035.66 - absdiff 657.80 percdiff 27.8193 tig 1057 read 144991 pos 45344-50884 NOT confused by 3' edge to read 372708 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 609 erate 0.0646 score 569.66 - absdiff 2123.81 percdiff 130.1702 tig 1057 read 144991 pos 45344-50884 IS confused by 3' edge to read 464241 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 2455 erate 0.0518 score 2327.83 - absdiff 365.64 percdiff 14.5634 tig 1057 read 144991 pos 45344-50884 IS confused by 3' edge to read 464242 - best edge read 575114 len 2866 erate 0.0602 score 2693.47 - alt edge len 2456 erate 0.0514 score 2329.76 - absdiff 363.71 percdiff 14.4809 discard region 38362:40607 - no confusion in best edges saved region 44696:48420 - 3 best edges are potentially confused break tig 1057 into up to 3 pieces: 0 44196 unique (length 44196) 44196 48920 repeat (length 4724) 48920 50884 unique (length 1964) Creating Unitig 113381 Creating Unitig 113382 Creating Unitig 113383 For tig 1057 unique region 0 44196 - 0/ 60 reads repeat/unique - unitig 113381 created. For tig 1057 repeat region 44196 48920 - 4/ 0 reads repeat/unique - unitig 113383 created. For tig 1057 unique region 48920 50884 - 0/ 2 reads repeat/unique - unitig 113382 created. Annotating repeats in reads for tig 1060/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 32017:33926 - contained in read 286451 25137- 37738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1061/113047. Annotated with 357 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3087:18545 - closest 5' read 289428 ( +1137) 1950:16260 ( -2285) saved region 3087:18545 - closest 3' read 615182 ( -7449) 10536:18545 ( +0) search for confused edges: tig 1061 read 681628 pos 0-7885 NOT confused by 3' edge to read 447100 - best edge read 289428 len 3950 erate 0.0530 score 3740.65 - alt edge len 1238 erate 0.0347 score 1195.04 - absdiff 2545.61 percdiff 103.1510 tig 1061 read 447100 pos 11916-17984 NOT confused by 5' edge to read 681628 - best edge read 289428 len 4270 erate 0.0492 score 4059.92 - alt edge len 1250 erate 0.0347 score 1206.62 - absdiff 2853.29 percdiff 108.3554 discard region 3087:18545 - no confusion in best edges Annotating repeats in reads for tig 1078/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 0:5852 - contained in read 720943 0- 7827 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1080/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 8252:10292 - contained in read 188750 4589- 10839 thickest edges to the repeat regions: saved region 1706:7543 - closest read 494986 ( +906) 800:7543 ( +0) (contained) saved region 1706:7543 - closest 5' read 494986 ( +906) 800:7543 ( +0) saved region 1706:7543 - closest 3' read 494986 ( +906) 800:7543 ( +0) search for confused edges: discard region 1706:7543 - no confusion in best edges Annotating repeats in reads for tig 1083/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11296:10112 - contained in read 69190 8308- 12561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1084/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 19974:21040 - contained in read 10505 17536- 21307 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1085/113047. Annotated with 81 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 30500:32027 - closest 5' read 30902 ( +5731) 24769:31616 ( -411) saved region 30500:32027 - closest 3' read 550995 ( -72) 30572:37043 ( +5016) search for confused edges: tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 348790 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 880 erate 0.0627 score 824.82 - absdiff 159.15 percdiff 17.5971 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 522986 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 955 erate 0.0566 score 900.95 - absdiff 83.03 percdiff 8.8094 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 522987 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 960 erate 0.0563 score 905.95 - absdiff 78.02 percdiff 8.2564 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 532508 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 590 erate 0.0724 score 547.28 - absdiff 436.69 percdiff 57.0366 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 597224 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 500 erate 0.0680 score 466.00 - absdiff 517.97 percdiff 71.4458 tig 1085 read 30904 pos 24732-31614 IS confused by 3' edge to read 707185 - best edge read 550995 len 1046 erate 0.0593 score 983.97 - alt edge len 581 erate 0.0593 score 546.55 - absdiff 437.43 percdiff 57.1604 saved region 30500:32027 - 6 best edges are potentially confused break tig 1085 into up to 3 pieces: 0 30000 unique (length 30000) 30000 32527 repeat (length 2527) 32527 37747 unique (length 5220) Creating Unitig 113384 Creating Unitig 113385 For tig 1085 unique region 0 30000 - 0/ 37 reads repeat/unique - unitig 113384 created. For tig 1085 repeat region 30000 32527 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1085 unique region 32527 37747 - 0/ 5 reads repeat/unique - unitig 113385 created. Annotating repeats in reads for tig 1088/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3281:4513 - contained in read 144032 0- 7925 discard region 17377:19615 - contained in read 577096 11014- 23559 thickest edges to the repeat regions: saved region 23403:25696 - closest read 123814 ( +19) 23384:25708 ( +12) (contained) saved region 23403:25696 - closest 5' read 123814 ( +19) 23384:25708 ( +12) saved region 23403:25696 - closest 3' read 123814 ( +19) 23384:25708 ( +12) search for confused edges: tig 1088 read 263555 pos 19315-25418 IS confused by 3' edge to read 404670 - best edge read 123814 len 1989 erate 0.0425 score 1904.47 - alt edge len 1977 erate 0.0678 score 1842.96 - absdiff 61.51 percdiff 3.2827 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 68357 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2145 erate 0.0557 score 2025.52 - absdiff 93.20 percdiff 4.4979 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 250740 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2133 erate 0.0565 score 2012.49 - absdiff 106.24 percdiff 5.1433 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 282997 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 701 erate 0.0687 score 652.84 - absdiff 1465.88 percdiff 105.7802 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 508276 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 694 erate 0.0679 score 646.88 - absdiff 1471.85 percdiff 106.4396 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 516913 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2025 erate 0.0570 score 1909.57 - absdiff 209.15 percdiff 10.3841 tig 1088 read 21668 pos 23428-26899 IS confused by 5' edge to read 647645 - best edge read 123814 len 2213 erate 0.0426 score 2118.73 - alt edge len 2134 erate 0.0715 score 1981.42 - absdiff 137.31 percdiff 6.6977 saved region 23403:25696 - 7 best edges are potentially confused break tig 1088 into up to 3 pieces: 0 22903 unique (length 22903) 22903 26196 repeat (length 3293) 26196 26918 unique (length 722) Creating Unitig 113386 Creating Unitig 113387 Creating Unitig 113388 For tig 1088 unique region 0 22903 - 0/ 35 reads repeat/unique - unitig 113386 created. For tig 1088 repeat region 22903 26196 - 2/ 0 reads repeat/unique - unitig 113387 created. For tig 1088 unique region 26196 26918 - 0/ 2 reads repeat/unique - unitig 113388 created. Annotating repeats in reads for tig 1092/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1095/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 14481:16344 - contained in read 37311 9820- 16344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1097/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 21581:20695 - contained in read 661848 15638- 21920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1099/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3627:4773 - closest 5' read 397118 ( +1538) 2089:4530 ( -243) saved region 3627:4773 - closest 3' read 309186 ( -167) 3794:10086 ( +5313) search for confused edges: tig 1099 read 397118 pos 2089-4530 IS confused by 3' edge to read 689479 - best edge read 309186 len 722 erate 0.0679 score 672.98 - alt edge len 669 erate 0.0583 score 630.00 - absdiff 42.98 percdiff 6.5970 saved region 3627:4773 - 1 best edges are potentially confused break tig 1099 into up to 3 pieces: 0 3127 unique (length 3127) 3127 5273 repeat (length 2146) 5273 17764 unique (length 12491) Creating Unitig 113389 Creating Unitig 113390 For tig 1099 unique region 0 3127 - 0/ 5 reads repeat/unique - unitig 113389 created. For tig 1099 repeat region 3127 5273 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1099 unique region 5273 17764 - 0/ 18 reads repeat/unique - unitig 113390 created. Annotating repeats in reads for tig 1101/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2373:3109 - contained in read 53846 0- 4089 discard region 14551:16839 - contained in read 387318 8070- 18106 discard region 17935:18945 - contained in read 351744 15159- 19290 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1110/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 19961:24341 - contained in read 329753 15736- 29538 thickest edges to the repeat regions: saved region 13993:17846 - closest read 646688 ( +158) 13835:19732 ( +1886) (contained) saved region 13993:17846 - closest 5' read 646688 ( +158) 13835:19732 ( +1886) saved region 13993:17846 - closest 3' read 646688 ( +158) 13835:19732 ( +1886) search for confused edges: tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 278790 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 972 erate 0.0613 score 912.42 - absdiff 847.62 percdiff 63.4341 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 452701 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 567 erate 0.0486 score 539.44 - absdiff 1220.60 percdiff 106.1626 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 586120 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1427 erate 0.0577 score 1344.66 - absdiff 415.38 percdiff 26.7580 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 586122 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1447 erate 0.0645 score 1353.67 - absdiff 406.37 percdiff 26.1021 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 657247 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1850 erate 0.0686 score 1723.09 - absdiff 36.95 percdiff 2.1217 tig 1110 read 179917 pos 5948-16287 IS confused by 3' edge to read 657248 - best edge read 646688 len 1883 erate 0.0653 score 1760.04 - alt edge len 1857 erate 0.0613 score 1743.17 - absdiff 16.87 percdiff 0.9634 saved region 13993:17846 - 6 best edges are potentially confused break tig 1110 into up to 3 pieces: 0 13493 unique (length 13493) 13493 18346 repeat (length 4853) 18346 29561 unique (length 11215) Creating Unitig 113391 Creating Unitig 113392 Creating Unitig 113393 For tig 1110 unique region 0 13493 - 0/ 25 reads repeat/unique - unitig 113391 created. For tig 1110 repeat region 13493 18346 - 8/ 0 reads repeat/unique - unitig 113393 created. For tig 1110 unique region 18346 29561 - 0/ 24 reads repeat/unique - unitig 113392 created. Annotating repeats in reads for tig 1112/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5505:7327 - contained in read 72114 0- 9032 discard region 13119:14936 - contained in read 125237 10170- 16097 discard region 15492:16117 - contained in read 125238 10370- 16117 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1114/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 760:1618 - contained in read 74510 0- 5998 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1115/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1119/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5159:7352 - contained in read 206941 137- 7352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1120/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7926:8620 - contained in read 161921 2979- 9985 discard region 10475:11289 - contained in read 502516 7677- 13000 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1121/113047. Annotated with 154 overlaps. Scan reads to discard spanned repeats. discard region 6307:11769 - contained in read 625301 5332- 14955 thickest edges to the repeat regions: saved region 19038:21509 - closest 5' read 608541 ( +0) 19038:21347 ( -162) saved region 19038:21509 - closest 3' read 593620 ( -5) 19043:24625 ( +3116) search for confused edges: discard region 19038:21509 - no confusion in best edges Annotating repeats in reads for tig 1125/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 1808:2985 - contained in read 97585 0- 5843 discard region 5852:5265 - contained in read 97585 0- 5843 discard region 9224:12715 - contained in read 24124 5197- 12715 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1126/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1132/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 0:7251 - contained in read 105744 0- 9117 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1134/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 16490:19327 - contained in read 241948 13684- 19623 thickest edges to the repeat regions: saved region 11658:14267 - closest read 553503 ( +3699) 7959:14483 ( +216) (contained) saved region 11658:14267 - closest read 517888 ( +0) 11658:18927 ( +4660) (contained) saved region 11658:14267 - closest 5' read 517888 ( +0) 11658:18927 ( +4660) saved region 11658:14267 - closest 3' read 553503 ( +3699) 7959:14483 ( +216) search for confused edges: discard region 11658:14267 - no confusion in best edges Annotating repeats in reads for tig 1135/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1137/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13203:27964 - closest 5' read 416767 ( +0) 13203:21097 ( -6867) saved region 13203:27964 - closest 3' read 427142 ( -7223) 20426:35804 ( +7840) search for confused edges: tig 1137 read 40746 pos 13860-21595 IS confused by 5' edge to read 324329 - best edge read 269128 len 7430 erate 0.0233 score 7256.88 - alt edge len 5515 erate 0.0536 score 5219.40 - absdiff 2037.49 percdiff 32.6617 tig 1137 read 516979 pos 14839-22255 NOT confused by 3' edge to read 324329 - best edge read 40746 len 6676 erate 0.0198 score 6543.82 - alt edge len 4524 erate 0.0520 score 4288.75 - absdiff 2255.06 percdiff 41.6349 tig 1137 read 70234 pos 15807-25148 NOT confused by 5' edge to read 298285 - best edge read 695734 len 6134 erate 0.0687 score 5712.59 - alt edge len 725 erate 0.0361 score 698.83 - absdiff 5013.77 percdiff 156.4011 tig 1137 read 70234 pos 15807-25148 NOT confused by 5' edge to read 298287 - best edge read 695734 len 6134 erate 0.0687 score 5712.59 - alt edge len 738 erate 0.0382 score 709.81 - absdiff 5002.79 percdiff 155.7917 tig 1137 read 70234 pos 15807-25148 NOT confused by 3' edge to read 324329 - best edge read 516979 len 6384 erate 0.0123 score 6305.48 - alt edge len 3547 erate 0.0403 score 3404.06 - absdiff 2901.42 percdiff 59.7644 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 135411 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 905 erate 0.0424 score 866.63 - absdiff 5000.56 percdiff 148.5209 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 236680 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3751 erate 0.0171 score 3686.86 - absdiff 2180.33 percdiff 45.6421 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 236682 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3740 erate 0.0196 score 3666.70 - absdiff 2200.49 percdiff 46.1615 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 263738 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 922 erate 0.0423 score 883.00 - absdiff 4984.19 percdiff 147.6756 tig 1137 read 695734 pos 19199-27874 NOT confused by 5' edge to read 298285 - best edge read 427143 len 7056 erate 0.0134 score 6961.45 - alt edge len 3046 erate 0.0698 score 2833.39 - absdiff 4128.06 percdiff 84.2905 tig 1137 read 695734 pos 19199-27874 NOT confused by 5' edge to read 298287 - best edge read 427143 len 7056 erate 0.0134 score 6961.45 - alt edge len 3059 erate 0.0724 score 2837.53 - absdiff 4123.92 percdiff 84.1704 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 308582 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 732 erate 0.0533 score 692.98 - absdiff 5174.21 percdiff 157.7460 tig 1137 read 695734 pos 19199-27874 NOT confused by 5' edge to read 342347 - best edge read 427143 len 7056 erate 0.0134 score 6961.45 - alt edge len 2086 erate 0.0289 score 2025.71 - absdiff 4935.73 percdiff 109.8397 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 408511 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3823 erate 0.0295 score 3710.22 - absdiff 2156.97 percdiff 45.0428 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 408514 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 3810 erate 0.0226 score 3723.89 - absdiff 2143.30 percdiff 44.6935 tig 1137 read 695734 pos 19199-27874 NOT confused by 3' edge to read 592069 - best edge read 70234 len 6300 erate 0.0687 score 5867.19 - alt edge len 1059 erate 0.0312 score 1025.96 - absdiff 4841.23 percdiff 140.4650 tig 1137 read 427143 pos 20161-27952 NOT confused by 3' edge to read 149461 - best edge read 427142 len 7635 erate 0.0170 score 7505.20 - alt edge len 4507 erate 0.0448 score 4305.09 - absdiff 3200.12 percdiff 54.1920 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 236680 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2183 erate 0.0096 score 2162.04 - absdiff 4807.30 percdiff 105.2918 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 236682 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2172 erate 0.0125 score 2144.85 - absdiff 4824.49 percdiff 105.8677 tig 1137 read 427143 pos 20161-27952 NOT confused by 3' edge to read 342347 - best edge read 427142 len 7635 erate 0.0170 score 7505.20 - alt edge len 2765 erate 0.0243 score 2697.81 - absdiff 4807.39 percdiff 94.2348 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 408511 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2255 erate 0.0151 score 2220.95 - absdiff 4748.39 percdiff 103.3350 tig 1137 read 427143 pos 20161-27952 NOT confused by 5' edge to read 408514 - best edge read 695734 len 7064 erate 0.0134 score 6969.34 - alt edge len 2242 erate 0.0188 score 2199.85 - absdiff 4769.49 percdiff 104.0330 tig 1137 read 427143 pos 20161-27952 NOT confused by 3' edge to read 479900 - best edge read 427142 len 7635 erate 0.0170 score 7505.20 - alt edge len 1109 erate 0.0721 score 1029.04 - absdiff 6476.16 percdiff 151.7689 saved region 13203:27964 - 1 best edges are potentially confused break tig 1137 into up to 3 pieces: 0 12703 unique (length 12703) 12703 28464 repeat (length 15761) 28464 38062 unique (length 9598) Creating Unitig 113394 Creating Unitig 113395 Creating Unitig 113396 For tig 1137 unique region 0 12703 - 0/ 12 reads repeat/unique - unitig 113394 created. For tig 1137 repeat region 12703 28464 - 66/ 0 reads repeat/unique - unitig 113395 created. For tig 1137 unique region 28464 38062 - 0/ 18 reads repeat/unique - unitig 113396 created. Annotating repeats in reads for tig 1138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1140/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:3746 - contained in read 30452 0- 7738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1141/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 3235:1808 - contained in read 121629 0- 5496 discard region 4233:5528 - contained in read 178373 1063- 10940 thickest edges to the repeat regions: saved region 18326:22437 - closest read 377787 ( +0) 18326:26180 ( +3743) (contained) saved region 18326:22437 - closest 5' read 377787 ( +0) 18326:26180 ( +3743) saved region 18326:22437 - closest 3' read 377787 ( +0) 18326:26180 ( +3743) search for confused edges: discard region 18326:22437 - no confusion in best edges Annotating repeats in reads for tig 1144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1153/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 27648:27055 - contained in read 47401 20430- 27648 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1157/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13347:18097 - contained in read 297821 12486- 19761 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1160/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 7849:9771 - contained in read 70687 4315- 10747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1162/113047. Annotated with 130 overlaps. Scan reads to discard spanned repeats. discard region 15290:16340 - contained in read 619821 7386- 18009 thickest edges to the repeat regions: saved region 7386:14160 - closest read 619821 ( +0) 7386:18009 ( +3849) (contained) saved region 7386:14160 - closest 5' read 619821 ( +0) 7386:18009 ( +3849) saved region 7386:14160 - closest 3' read 619821 ( +0) 7386:18009 ( +3849) search for confused edges: tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 9014 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 581 erate 0.0588 score 546.84 - absdiff 5152.72 percdiff 164.9822 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 66401 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 840 erate 0.0312 score 813.79 - absdiff 4885.76 percdiff 150.0231 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 66402 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 600 erate 0.0667 score 559.98 - absdiff 5139.57 percdiff 164.2159 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 122235 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 3633 erate 0.0523 score 3442.99 - absdiff 2256.56 percdiff 49.3639 tig 1162 read 603641 pos 7393-13972 IS confused by 3' edge to read 298023 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 5915 erate 0.0359 score 5702.65 - absdiff 3.10 percdiff 0.0543 tig 1162 read 603641 pos 7393-13972 NOT confused by 5' edge to read 304590 - best edge read 298022 len 6510 erate 0.0334 score 6292.57 - alt edge len 958 erate 0.0480 score 912.02 - absdiff 5380.55 percdiff 149.3647 tig 1162 read 603641 pos 7393-13972 NOT confused by 5' edge to read 304591 - best edge read 298022 len 6510 erate 0.0334 score 6292.57 - alt edge len 987 erate 0.0537 score 934.00 - absdiff 5358.57 percdiff 148.3020 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 309402 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1315 erate 0.0485 score 1251.22 - absdiff 4448.33 percdiff 127.9952 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 309406 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1312 erate 0.0518 score 1244.04 - absdiff 4455.52 percdiff 128.3346 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 411741 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1144 erate 0.0647 score 1069.98 - absdiff 4629.57 percdiff 136.7766 tig 1162 read 603641 pos 7393-13972 NOT confused by 3' edge to read 509838 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 1809 erate 0.0664 score 1688.88 - absdiff 4010.67 percdiff 108.5662 tig 1162 read 603641 pos 7393-13972 IS confused by 3' edge to read 650683 - best edge read 252615 len 5921 erate 0.0374 score 5699.55 - alt edge len 3846 erate 0.0486 score 3659.08 - absdiff 2040.47 percdiff 43.6061 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 9014 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 583 erate 0.0556 score 550.59 - absdiff 5779.35 percdiff 167.9917 tig 1162 read 479966 pos 7417-14112 NOT confused by 3' edge to read 18078 - best edge read 619821 len 6611 erate 0.0344 score 6383.58 - alt edge len 513 erate 0.0316 score 496.79 - absdiff 5886.79 percdiff 171.1185 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 66401 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 843 erate 0.0337 score 814.59 - absdiff 5515.34 percdiff 154.3936 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 66402 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 602 erate 0.0701 score 559.80 - absdiff 5770.13 percdiff 167.4995 tig 1162 read 479966 pos 7417-14112 IS confused by 5' edge to read 298023 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 5876 erate 0.0329 score 5682.68 - absdiff 647.26 percdiff 10.7763 tig 1162 read 479966 pos 7417-14112 NOT confused by 3' edge to read 304590 - best edge read 619821 len 6611 erate 0.0344 score 6383.58 - alt edge len 1098 erate 0.0609 score 1031.13 - absdiff 5352.45 percdiff 144.3737 tig 1162 read 479966 pos 7417-14112 NOT confused by 3' edge to read 304591 - best edge read 619821 len 6611 erate 0.0344 score 6383.58 - alt edge len 1127 erate 0.0638 score 1055.10 - absdiff 5328.48 percdiff 143.2643 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 309402 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 1323 erate 0.0479 score 1259.63 - absdiff 5070.31 percdiff 133.6126 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 309406 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 1320 erate 0.0513 score 1252.28 - absdiff 5077.65 percdiff 133.9357 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 411741 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 1147 erate 0.0636 score 1074.05 - absdiff 5255.88 percdiff 141.9745 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 628694 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 984 erate 0.0424 score 942.28 - absdiff 5387.66 percdiff 148.1710 tig 1162 read 479966 pos 7417-14112 NOT confused by 5' edge to read 650683 - best edge read 298022 len 6521 erate 0.0293 score 6329.93 - alt edge len 3808 erate 0.0494 score 3619.88 - absdiff 2710.05 percdiff 54.4744 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 9014 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 570 erate 0.0667 score 531.98 - absdiff 5697.76 percdiff 168.5298 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 66401 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 829 erate 0.0338 score 800.98 - absdiff 5428.76 percdiff 154.4297 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 253938 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 3245 erate 0.0595 score 3051.92 - absdiff 3177.81 percdiff 68.4751 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 292626 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 1397 erate 0.0723 score 1296.00 - absdiff 4933.74 percdiff 131.1165 tig 1162 read 298022 pos 7434-14019 IS confused by 3' edge to read 298023 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 5857 erate 0.0145 score 5772.07 - absdiff 457.66 percdiff 7.6266 tig 1162 read 298022 pos 7434-14019 NOT confused by 5' edge to read 304590 - best edge read 479966 len 6501 erate 0.0293 score 6310.52 - alt edge len 1001 erate 0.0543 score 946.65 - absdiff 5363.88 percdiff 147.8228 tig 1162 read 298022 pos 7434-14019 NOT confused by 5' edge to read 304591 - best edge read 479966 len 6501 erate 0.0293 score 6310.52 - alt edge len 1030 erate 0.0595 score 968.72 - absdiff 5341.81 percdiff 146.7683 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 309402 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 1296 erate 0.0224 score 1266.97 - absdiff 4962.77 percdiff 132.3986 tig 1162 read 298022 pos 7434-14019 NOT confused by 3' edge to read 309406 - best edge read 603641 len 6445 erate 0.0334 score 6229.74 - alt edge len 1293 erate 0.0256 score 1259.90 - absdiff 4969.84 percdiff 132.7124 saved region 7386:14160 - 4 best edges are potentially confused break tig 1162 into up to 3 pieces: 0 6886 unique (length 6886) 6886 14660 repeat (length 7774) 14660 18639 unique (length 3979) Creating Unitig 113397 Creating Unitig 113398 Creating Unitig 113399 For tig 1162 unique region 0 6886 - 0/ 11 reads repeat/unique - unitig 113397 created. For tig 1162 repeat region 6886 14660 - 25/ 0 reads repeat/unique - unitig 113399 created. For tig 1162 unique region 14660 18639 - 0/ 13 reads repeat/unique - unitig 113398 created. Annotating repeats in reads for tig 1163/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 21041:22104 - contained in read 627070 13481- 23190 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1164/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13667:12544 - contained in read 527714 7957- 16250 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1167/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4512:7193 - contained in read 260324 3327- 8170 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1171/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3970:2818 - contained in read 621794 0- 5437 discard region 4012:2862 - contained in read 621794 0- 5437 discard region 26520:27088 - contained in read 229581 18237- 28246 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1174/113047. Annotated with 112 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15073:21984 - closest 5' read 368503 (+11435) 3638:20681 ( -1303) saved region 15073:21984 - closest 3' read 121478 ( -4098) 19171:29768 ( +7784) saved region 35685:36757 - closest read 711221 ( +0) 35685:42496 ( +5739) (contained) saved region 35685:36757 - closest 5' read 711221 ( +0) 35685:42496 ( +5739) saved region 35685:36757 - closest 3' read 711221 ( +0) 35685:42496 ( +5739) search for confused edges: tig 1174 read 121478 pos 19171-29768 IS confused by 3' edge to read 609233 - best edge read 368503 len 1472 erate 0.0611 score 1382.06 - alt edge len 1286 erate 0.0709 score 1194.82 - absdiff 187.24 percdiff 14.5321 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 59025 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 788 erate 0.0586 score 741.82 - absdiff 9.63 percdiff 1.2894 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 70990 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 786 erate 0.0360 score 757.70 - absdiff 6.25 percdiff 0.8288 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 181800 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 788 erate 0.0700 score 732.84 - absdiff 18.61 percdiff 2.5076 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 190300 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 795 erate 0.0702 score 739.19 - absdiff 12.26 percdiff 1.6448 tig 1174 read 530022 pos 29238-36554 IS confused by 3' edge to read 661799 - best edge read 711221 len 791 erate 0.0500 score 751.45 - alt edge len 714 erate 0.0623 score 669.52 - absdiff 81.93 percdiff 11.5319 saved region 15073:21984 - 1 best edges are potentially confused saved region 35685:36757 - 5 best edges are potentially confused break tig 1174 into up to 5 pieces: 0 14573 unique (length 14573) 14573 22484 repeat (length 7911) 22484 35185 unique (length 12701) 35185 37257 repeat (length 2072) 37257 52853 unique (length 15596) Creating Unitig 113400 Creating Unitig 113401 Creating Unitig 113402 Creating Unitig 113403 For tig 1174 unique region 0 14573 - 0/ 15 reads repeat/unique - unitig 113400 created. For tig 1174 repeat region 14573 22484 - 1/ 0 reads repeat/unique - unitig 113401 created. For tig 1174 unique region 22484 35185 - 0/ 41 reads repeat/unique - unitig 113402 created. For tig 1174 repeat region 35185 37257 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1174 unique region 37257 52853 - 0/ 15 reads repeat/unique - unitig 113403 created. Annotating repeats in reads for tig 1175/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3844:6504 - contained in read 700913 0- 9671 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1179/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1180/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 24459:28161 - contained in read 668068 18928- 28161 thickest edges to the repeat regions: saved region 11677:24409 - closest 5' read 382307 ( +3298) 8379:19391 ( -5018) saved region 11677:24409 - closest 3' read 339921 ( -4093) 15770:25109 ( +700) search for confused edges: tig 1180 read 407178 pos 13725-19766 NOT confused by 5' edge to read 30453 - best edge read 382307 len 5634 erate 0.0130 score 5560.76 - alt edge len 1695 erate 0.0229 score 1656.18 - absdiff 3904.57 percdiff 108.2058 tig 1180 read 407178 pos 13725-19766 IS confused by 5' edge to read 81572 - best edge read 382307 len 5634 erate 0.0130 score 5560.76 - alt edge len 4007 erate 0.0221 score 3918.45 - absdiff 1642.31 percdiff 34.6509 tig 1180 read 407178 pos 13725-19766 IS confused by 5' edge to read 396629 - best edge read 382307 len 5634 erate 0.0130 score 5560.76 - alt edge len 4632 erate 0.0302 score 4492.11 - absdiff 1068.64 percdiff 21.2605 tig 1180 read 230504 pos 15668-19777 IS confused by 5' edge to read 81572 - best edge read 407178 len 4062 erate 0.0264 score 3954.76 - alt edge len 2051 erate 0.0352 score 1978.80 - absdiff 1975.96 percdiff 66.6027 tig 1180 read 230504 pos 15668-19777 IS confused by 5' edge to read 396629 - best edge read 407178 len 4062 erate 0.0264 score 3954.76 - alt edge len 2682 erate 0.0478 score 2553.80 - absdiff 1400.96 percdiff 43.0498 tig 1180 read 339921 pos 15770-25109 IS confused by 3' edge to read 81572 - best edge read 230504 len 3978 erate 0.0237 score 3883.72 - alt edge len 1965 erate 0.0219 score 1921.97 - absdiff 1961.75 percdiff 67.5804 tig 1180 read 339921 pos 15770-25109 IS confused by 3' edge to read 396629 - best edge read 230504 len 3978 erate 0.0237 score 3883.72 - alt edge len 2589 erate 0.0406 score 2483.89 - absdiff 1399.83 percdiff 43.9674 saved region 11677:24409 - 6 best edges are potentially confused break tig 1180 into up to 3 pieces: 0 11177 unique (length 11177) 11177 24909 repeat (length 13732) 24909 28161 unique (length 3252) Creating Unitig 113404 Creating Unitig 113405 Creating Unitig 113406 For tig 1180 unique region 0 11177 - 0/ 11 reads repeat/unique - unitig 113404 created. For tig 1180 repeat region 11177 24909 - 15/ 0 reads repeat/unique - unitig 113405 created. For tig 1180 unique region 24909 28161 - 0/ 7 reads repeat/unique - unitig 113406 created. Annotating repeats in reads for tig 1182/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7033:4749 - contained in read 296370 339- 7936 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1186/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 1030:2168 - contained in read 374826 0- 5930 discard region 6646:13886 - contained in read 588059 5814- 17309 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1192/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17404:16844 - contained in read 435941 10216- 20839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1194/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21226:26424 - closest read 564493 ( +1500) 19726:26424 ( +0) (contained) saved region 21226:26424 - closest 5' read 564493 ( +1500) 19726:26424 ( +0) saved region 21226:26424 - closest 3' read 564493 ( +1500) 19726:26424 ( +0) search for confused edges: discard region 21226:26424 - no confusion in best edges Annotating repeats in reads for tig 1198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1199/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 14041:15168 - contained in read 385406 8451- 17362 discard region 16892:17602 - contained in read 179969 13767- 20094 thickest edges to the repeat regions: saved region 3677:11961 - closest 5' read 428042 ( +2710) 967:9994 ( -1967) saved region 3677:11961 - closest 3' read 238969 ( -2434) 6111:13021 ( +1060) search for confused edges: discard region 3677:11961 - no confusion in best edges Annotating repeats in reads for tig 1203/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4443:7758 - contained in read 371405 0- 10002 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1205/113047. Annotated with 158 overlaps. Scan reads to discard spanned repeats. discard region 43727:44629 - contained in read 482730 32889- 46762 thickest edges to the repeat regions: saved region 25124:41012 - closest 5' read 141581 ( +0) 25124:31983 ( -9029) saved region 25124:41012 - closest 3' read 474176 ( -5536) 30660:44664 ( +3652) search for confused edges: tig 1205 read 616878 pos 29063-36043 IS confused by 5' edge to read 141580 - best edge read 141581 len 2489 erate 0.0359 score 2399.64 - alt edge len 2474 erate 0.0459 score 2360.44 - absdiff 39.20 percdiff 1.6471 tig 1205 read 616877 pos 29086-36047 NOT confused by 3' edge to read 141580 - best edge read 616878 len 6921 erate 0.0143 score 6822.03 - alt edge len 2448 erate 0.0380 score 2354.98 - absdiff 4467.05 percdiff 97.3532 saved region 25124:41012 - 1 best edges are potentially confused break tig 1205 into up to 3 pieces: 0 24624 unique (length 24624) 24624 41512 repeat (length 16888) 41512 46762 unique (length 5250) Creating Unitig 113407 Creating Unitig 113408 Creating Unitig 113409 For tig 1205 unique region 0 24624 - 0/ 51 reads repeat/unique - unitig 113407 created. For tig 1205 repeat region 24624 41512 - 37/ 0 reads repeat/unique - unitig 113408 created. For tig 1205 unique region 41512 46762 - 0/ 29 reads repeat/unique - unitig 113409 created. Annotating repeats in reads for tig 1206/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 12012:13188 - contained in read 486506 8730- 16925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1210/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3135:2312 - contained in read 377462 1180- 3269 discard region 3269:2322 - contained in read 377462 1180- 3269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1213/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1216/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17134:26597 - closest 5' read 217665 ( +766) 16368:25601 ( -996) saved region 17134:26597 - closest 3' read 549868 ( -7) 17141:26597 ( +0) search for confused edges: discard region 17134:26597 - no confusion in best edges Annotating repeats in reads for tig 1217/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 9135:12573 - contained in read 484214 7628- 14049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1228/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3953:10928 - closest 5' read 529232 ( +989) 2964:10039 ( -889) saved region 3953:10928 - closest 3' read 568179 ( -9) 3962:12233 ( +1305) search for confused edges: tig 1228 read 529232 pos 2964-10039 IS confused by 5' edge to read 105415 - best edge read 568179 len 5927 erate 0.0518 score 5619.98 - alt edge len 4564 erate 0.0285 score 4433.93 - absdiff 1186.06 percdiff 23.5939 saved region 3953:10928 - 1 best edges are potentially confused break tig 1228 into up to 3 pieces: 0 3453 unique (length 3453) 3453 11428 repeat (length 7975) 11428 27933 unique (length 16505) Creating Unitig 113410 Creating Unitig 113411 Creating Unitig 113412 For tig 1228 unique region 0 3453 - 0/ 20 reads repeat/unique - unitig 113410 created. For tig 1228 repeat region 3453 11428 - 10/ 0 reads repeat/unique - unitig 113411 created. For tig 1228 unique region 11428 27933 - 0/ 22 reads repeat/unique - unitig 113412 created. Annotating repeats in reads for tig 1229/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11437:15373 - contained in read 219343 9437- 15724 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1230/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6424:6945 - contained in read 66697 522- 10102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1236/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 14864:12719 - contained in read 614217 7013- 17288 discard region 18879:16689 - contained in read 614217 7013- 17288 thickest edges to the repeat regions: saved region 6189:10585 - closest 5' read 475135 ( +2216) 3973:10433 ( -152) saved region 6189:10585 - closest 3' read 614217 ( -824) 7013:17288 ( +6703) search for confused edges: discard region 6189:10585 - no confusion in best edges Annotating repeats in reads for tig 1237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1243/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 2499:9806 - contained in read 502457 164- 9806 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1247/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 22299:24628 - contained in read 605152 19329- 24661 thickest edges to the repeat regions: saved region 12797:14526 - closest read 163344 ( +4303) 8494:14526 ( +0) (contained) saved region 12797:14526 - closest 5' read 163344 ( +4303) 8494:14526 ( +0) saved region 12797:14526 - closest 3' read 163344 ( +4303) 8494:14526 ( +0) search for confused edges: discard region 12797:14526 - no confusion in best edges Annotating repeats in reads for tig 1249/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9204:8532 - contained in read 371662 4535- 10820 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1250/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 14525:16387 - contained in read 296597 11827- 17135 discard region 18387:19249 - contained in read 372301 15226- 24344 discard region 19815:22886 - contained in read 372301 15226- 24344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1254/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 7111:5927 - contained in read 480961 0- 8247 discard region 7331:8473 - contained in read 92830 4220- 12165 thickest edges to the repeat regions: saved region 16149:23240 - closest 5' read 381646 ( +1419) 14730:23010 ( -230) saved region 16149:23240 - closest 3' read 416089 ( -5931) 22080:30286 ( +7046) search for confused edges: discard region 16149:23240 - no confusion in best edges Annotating repeats in reads for tig 1255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1259/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 0:7129 - contained in read 93331 0- 8266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1263/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 0:7230 - contained in read 363392 0- 8995 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1264/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 23281:27242 - closest read 234493 ( +4451) 18830:27242 ( +0) (contained) saved region 23281:27242 - closest 5' read 234493 ( +4451) 18830:27242 ( +0) saved region 23281:27242 - closest 3' read 234493 ( +4451) 18830:27242 ( +0) search for confused edges: discard region 23281:27242 - no confusion in best edges Annotating repeats in reads for tig 1266/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2850:6790 - contained in read 366931 1935- 6790 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1274/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4706:4042 - contained in read 206280 0- 7331 discard region 16384:17441 - contained in read 523444 12806- 20116 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1275/113047. Annotated with 599 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15475:22281 - closest read 343655 ( +0) 15475:24527 ( +2246) (contained) saved region 15475:22281 - closest 5' read 343655 ( +0) 15475:24527 ( +2246) saved region 15475:22281 - closest 3' read 343655 ( +0) 15475:24527 ( +2246) search for confused edges: tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 22359 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 681 erate 0.0499 score 647.02 - absdiff 3933.04 percdiff 150.4872 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 51901 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1969 erate 0.0340 score 1902.05 - absdiff 2678.01 percdiff 82.6275 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 58022 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1983 erate 0.0673 score 1849.54 - absdiff 2730.51 percdiff 84.9357 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 58024 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1984 erate 0.0682 score 1848.69 - absdiff 2731.37 percdiff 84.9735 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 94998 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 4606 erate 0.0366 score 4437.42 - absdiff 142.64 percdiff 3.1636 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 110294 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2339 erate 0.0374 score 2251.52 - absdiff 2328.54 percdiff 68.1698 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 121352 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3413 erate 0.0275 score 3319.14 - absdiff 1260.92 percdiff 31.9252 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 139609 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 678 erate 0.0636 score 634.88 - absdiff 3945.18 percdiff 151.3030 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 235869 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1592 erate 0.0515 score 1510.01 - absdiff 3070.05 percdiff 100.8214 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 243906 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3427 erate 0.0383 score 3295.75 - absdiff 1284.31 percdiff 32.6141 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 249636 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 675 erate 0.0402 score 647.87 - absdiff 3932.19 percdiff 150.4304 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 249637 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 667 erate 0.0483 score 634.78 - absdiff 3945.28 percdiff 151.3095 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 283291 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2125 erate 0.0598 score 1997.93 - absdiff 2582.13 percdiff 78.5084 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 344824 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2133 erate 0.0680 score 1987.96 - absdiff 2592.10 percdiff 78.9311 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 380859 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1152 erate 0.0538 score 1090.02 - absdiff 3490.04 percdiff 123.1036 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 406522 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 800 erate 0.0588 score 752.96 - absdiff 3827.10 percdiff 143.5247 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 406523 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 769 erate 0.0468 score 733.01 - absdiff 3847.05 percdiff 144.8145 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 406982 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1696 erate 0.0483 score 1614.08 - absdiff 2965.98 percdiff 95.7671 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 438766 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3860 erate 0.0484 score 3673.18 - absdiff 906.88 percdiff 21.9764 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 477357 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3675 erate 0.0218 score 3594.88 - absdiff 985.17 percdiff 24.1023 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 498841 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3621 erate 0.0295 score 3514.18 - absdiff 1065.88 percdiff 26.3367 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 498843 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3594 erate 0.0298 score 3486.90 - absdiff 1093.16 percdiff 27.1022 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 521261 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 535 erate 0.0393 score 513.97 - absdiff 4066.08 percdiff 159.6411 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 521262 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 536 erate 0.0429 score 513.01 - absdiff 4067.05 percdiff 159.7095 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 554990 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1196 erate 0.0535 score 1132.01 - absdiff 3448.05 percdiff 120.7283 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 588779 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 3000 erate 0.0370 score 2889.00 - absdiff 1691.06 percdiff 45.2817 tig 1275 read 687136 pos 11945-20548 IS confused by 3' edge to read 628925 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 4606 erate 0.0378 score 4431.89 - absdiff 148.17 percdiff 3.2882 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 642130 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 1587 erate 0.0523 score 1504.00 - absdiff 3076.06 percdiff 101.1186 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 651660 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2321 erate 0.0521 score 2200.08 - absdiff 2379.98 percdiff 70.2046 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 651661 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2337 erate 0.0524 score 2214.54 - absdiff 2365.52 percdiff 69.6293 tig 1275 read 687136 pos 11945-20548 NOT confused by 3' edge to read 651662 - best edge read 343655 len 4945 erate 0.0738 score 4580.06 - alt edge len 2342 erate 0.0532 score 2217.41 - absdiff 2362.65 percdiff 69.5157 saved region 15475:22281 - 9 best edges are potentially confused break tig 1275 into up to 3 pieces: 0 14975 unique (length 14975) 14975 22781 repeat (length 7806) 22781 24648 unique (length 1867) Creating Unitig 113413 Creating Unitig 113414 Creating Unitig 113415 For tig 1275 unique region 0 14975 - 0/ 16 reads repeat/unique - unitig 113413 created. For tig 1275 repeat region 14975 22781 - 15/ 0 reads repeat/unique - unitig 113415 created. For tig 1275 unique region 22781 24648 - 0/ 3 reads repeat/unique - unitig 113414 created. Annotating repeats in reads for tig 1278/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 9055:12805 - contained in read 280154 7144- 13845 discard region 13894:15962 - contained in read 321976 9089- 18603 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1288/113047. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 0:3279 - contained in read 75217 0- 4967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1289/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 15697:17325 - contained in read 360791 12074- 20201 thickest edges to the repeat regions: saved region 19170:22044 - closest read 482314 ( +3761) 15409:22044 ( +0) (contained) saved region 19170:22044 - closest 5' read 482314 ( +3761) 15409:22044 ( +0) saved region 19170:22044 - closest 3' read 482314 ( +3761) 15409:22044 ( +0) search for confused edges: discard region 19170:22044 - no confusion in best edges Annotating repeats in reads for tig 1294/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 12721:15204 - contained in read 703923 10223- 17066 thickest edges to the repeat regions: saved region 5658:11738 - closest read 647696 ( +22) 5636:11738 ( +0) (contained) saved region 5658:11738 - closest read 438785 ( +21) 5637:13866 ( +2128) (contained) saved region 5658:11738 - closest 5' read 438785 ( +21) 5637:13866 ( +2128) saved region 5658:11738 - closest 3' read 647696 ( +22) 5636:11738 ( +0) search for confused edges: discard region 5658:11738 - no confusion in best edges Annotating repeats in reads for tig 1297/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 16832:14920 - contained in read 560528 10756- 17302 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1298/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1526:872 - contained in read 622076 0- 6122 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1301/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 4607:6179 - contained in read 432007 326- 6179 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1303/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1425:3040 - contained in read 93993 0- 6553 discard region 5482:6553 - contained in read 403036 159- 8016 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1314/113047. Annotated with 136 overlaps. Scan reads to discard spanned repeats. discard region 17050:21202 - contained in read 446597 15179- 21202 thickest edges to the repeat regions: saved region 2984:12143 - closest 5' read 714581 ( +0) 2984:8430 ( -3713) saved region 2984:12143 - closest 3' read 10157 ( -3147) 6131:12143 ( +0) search for confused edges: tig 1314 read 599230 pos 2106-8236 IS confused by 5' edge to read 171350 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 2863 erate 0.0301 score 2776.82 - absdiff 1843.82 percdiff 49.8501 tig 1314 read 599230 pos 2106-8236 NOT confused by 5' edge to read 171722 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 757 erate 0.0411 score 725.89 - absdiff 3894.76 percdiff 145.6929 tig 1314 read 599230 pos 2106-8236 IS confused by 5' edge to read 588140 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 4419 erate 0.0331 score 4272.73 - absdiff 347.92 percdiff 7.8242 tig 1314 read 599230 pos 2106-8236 IS confused by 5' edge to read 588141 - best edge read 714581 len 4977 erate 0.0716 score 4620.65 - alt edge len 4307 erate 0.0251 score 4198.89 - absdiff 421.75 percdiff 9.5640 tig 1314 read 714581 pos 2984-8430 NOT confused by 3' edge to read 171350 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 3059 erate 0.0223 score 2990.78 - absdiff 2203.83 percdiff 53.8478 tig 1314 read 714581 pos 2984-8430 NOT confused by 3' edge to read 171722 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 941 erate 0.0404 score 902.98 - absdiff 4291.63 percdiff 140.7646 tig 1314 read 714581 pos 2984-8430 IS confused by 3' edge to read 588140 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 4578 erate 0.0321 score 4431.05 - absdiff 763.56 percdiff 15.8652 tig 1314 read 714581 pos 2984-8430 IS confused by 3' edge to read 588141 - best edge read 439363 len 5299 erate 0.0197 score 5194.61 - alt edge len 4480 erate 0.0221 score 4380.99 - absdiff 813.62 percdiff 16.9936 tig 1314 read 439363 pos 3029-10648 IS confused by 5' edge to read 171350 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 5222 erate 0.0140 score 5148.89 - absdiff 1616.90 percdiff 27.1413 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 171722 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 3107 erate 0.0235 score 3033.99 - absdiff 3731.81 percdiff 76.1610 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 226737 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 1455 erate 0.0405 score 1396.07 - absdiff 5369.72 percdiff 131.5807 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 274887 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 1233 erate 0.0187 score 1209.94 - absdiff 5555.85 percdiff 139.3188 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 297483 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 2226 erate 0.0167 score 2188.83 - absdiff 4576.97 percdiff 102.2258 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 390688 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 719 erate 0.0323 score 695.78 - absdiff 6070.02 percdiff 162.7008 tig 1314 read 439363 pos 3029-10648 IS confused by 5' edge to read 588140 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 6744 erate 0.0245 score 6578.77 - absdiff 187.02 percdiff 2.8029 tig 1314 read 439363 pos 3029-10648 IS confused by 5' edge to read 588141 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 6640 erate 0.0161 score 6533.10 - absdiff 232.70 percdiff 3.4995 tig 1314 read 439363 pos 3029-10648 NOT confused by 5' edge to read 634786 - best edge read 89605 len 6880 erate 0.0166 score 6765.79 - alt edge len 2034 erate 0.0665 score 1898.74 - absdiff 4867.05 percdiff 112.3443 saved region 2984:12143 - 8 best edges are potentially confused break tig 1314 into up to 3 pieces: 0 2484 unique (length 2484) 2484 12643 repeat (length 10159) 12643 21202 unique (length 8559) Creating Unitig 113416 Creating Unitig 113417 Creating Unitig 113418 For tig 1314 unique region 0 2484 - 0/ 11 reads repeat/unique - unitig 113416 created. For tig 1314 repeat region 2484 12643 - 51/ 0 reads repeat/unique - unitig 113417 created. For tig 1314 unique region 12643 21202 - 0/ 16 reads repeat/unique - unitig 113418 created. Annotating repeats in reads for tig 1320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1322/113047. Annotated with 92 overlaps. Scan reads to discard spanned repeats. discard region 5382:7456 - contained in read 658653 0- 10146 thickest edges to the repeat regions: saved region 9183:12021 - closest 5' read 485221 ( +0) 9183:11967 ( -54) saved region 9183:12021 - closest 3' read 654752 ( -547) 9730:15990 ( +3969) saved region 19827:22994 - closest 5' read 456326 ( +5638) 14189:20742 ( -2252) saved region 19827:22994 - closest 3' read 16848 ( -327) 20154:26465 ( +3471) search for confused edges: tig 1322 read 654752 pos 9730-15990 IS confused by 5' edge to read 116297 - best edge read 103154 len 2107 erate 0.0499 score 2001.86 - alt edge len 2001 erate 0.0546 score 1891.75 - absdiff 110.12 percdiff 5.6562 tig 1322 read 654752 pos 9730-15990 IS confused by 5' edge to read 177849 - best edge read 103154 len 2107 erate 0.0499 score 2001.86 - alt edge len 1888 erate 0.0584 score 1777.74 - absdiff 224.12 percdiff 11.8594 tig 1322 read 456328 pos 14187-20714 IS confused by 3' edge to read 557637 - best edge read 16848 len 562 erate 0.0680 score 523.78 - alt edge len 724 erate 0.0666 score 675.78 - absdiff 152.00 percdiff 25.3421 tig 1322 read 456328 pos 14187-20714 IS confused by 3' edge to read 694899 - best edge read 16848 len 562 erate 0.0680 score 523.78 - alt edge len 746 erate 0.0646 score 697.81 - absdiff 174.02 percdiff 28.4914 saved region 9183:12021 - 2 best edges are potentially confused saved region 19827:22994 - 2 best edges are potentially confused break tig 1322 into up to 5 pieces: 0 8683 unique (length 8683) 8683 12521 repeat (length 3838) 12521 19327 unique (length 6806) 19327 23494 repeat (length 4167) 23494 28708 unique (length 5214) Creating Unitig 113419 Creating Unitig 113420 Creating Unitig 113421 Creating Unitig 113422 Creating Unitig 113423 For tig 1322 unique region 0 8683 - 0/ 22 reads repeat/unique - unitig 113419 created. For tig 1322 repeat region 8683 12521 - 32/ 0 reads repeat/unique - unitig 113420 created. For tig 1322 unique region 12521 19327 - 0/ 12 reads repeat/unique - unitig 113421 created. For tig 1322 repeat region 19327 23494 - 1/ 0 reads repeat/unique - unitig 113423 created. For tig 1322 unique region 23494 28708 - 0/ 11 reads repeat/unique - unitig 113422 created. Annotating repeats in reads for tig 1328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1334/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 2778:4900 - contained in read 539957 0- 7095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1339/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:5903 - contained in read 362497 0- 8103 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1349/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2660:3694 - contained in read 518860 0- 5960 discard region 3776:5969 - contained in read 232426 1680- 10716 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1357/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:1532 - closest read 329504 ( +0) 0:1785 ( +253) (contained) saved region 0:1532 - closest 5' read 329504 ( +0) 0:1785 ( +253) saved region 0:1532 - closest 3' read 329504 ( +0) 0:1785 ( +253) search for confused edges: discard region 0:1532 - no confusion in best edges Annotating repeats in reads for tig 1362/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 325:1431 - contained in read 452181 0- 6612 discard region 2777:4213 - contained in read 452181 0- 6612 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1364/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19518:24186 - closest 5' read 621481 ( +0) 19518:23133 ( -1053) saved region 19518:24186 - closest 3' read 402586 ( -260) 19778:27468 ( +3282) search for confused edges: discard region 19518:24186 - no confusion in best edges Annotating repeats in reads for tig 1366/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 18534:20430 - contained in read 515936 13098- 21657 thickest edges to the repeat regions: saved region 25274:28902 - closest 5' read 345123 ( +5907) 19367:28730 ( -172) saved region 25274:28902 - closest 3' read 668585 ( -849) 26123:30028 ( +1126) search for confused edges: tig 1366 read 345124 pos 19382-28697 IS confused by 3' edge to read 149913 - best edge read 385197 len 2545 erate 0.0689 score 2369.65 - alt edge len 770 erate 0.0610 score 723.03 - absdiff 1646.62 percdiff 106.4850 saved region 25274:28902 - 1 best edges are potentially confused break tig 1366 into up to 3 pieces: 0 24774 unique (length 24774) 24774 29402 repeat (length 4628) 29402 42978 unique (length 13576) Creating Unitig 113424 Creating Unitig 113425 Creating Unitig 113426 For tig 1366 unique region 0 24774 - 0/ 45 reads repeat/unique - unitig 113424 created. For tig 1366 repeat region 24774 29402 - 3/ 0 reads repeat/unique - unitig 113426 created. For tig 1366 unique region 29402 42978 - 0/ 10 reads repeat/unique - unitig 113425 created. Annotating repeats in reads for tig 1368/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 4432:5174 - contained in read 277945 0- 7145 discard region 5578:7278 - contained in read 427742 4432- 9965 discard region 11120:12176 - contained in read 632387 6079- 15301 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1370/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1320:0 - contained in read 383347 0- 7085 discard region 2337:691 - contained in read 383347 0- 7085 discard region 3522:7174 - contained in read 604173 2221- 11304 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1384/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 652:1993 - contained in read 706661 0- 8467 discard region 28425:31623 - contained in read 686323 22134- 32197 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1386/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1390/113047. Annotated with 88 overlaps. Scan reads to discard spanned repeats. discard region 1919:3097 - contained in read 594004 0- 10187 thickest edges to the repeat regions: saved region 3786:10875 - closest 5' read 544635 ( +857) 2929:10845 ( -30) saved region 3786:10875 - closest 3' read 562968 ( -540) 4326:10875 ( +0) search for confused edges: discard region 3786:10875 - no confusion in best edges Annotating repeats in reads for tig 1392/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 8219:13308 - contained in read 27010 5904- 13308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1394/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 19682:20868 - contained in read 608395 15527- 23549 thickest edges to the repeat regions: saved region 7851:13699 - closest 5' read 583896 ( +7851) 0:13427 ( -272) saved region 7851:13699 - closest 3' read 353452 ( -264) 8115:19026 ( +5327) search for confused edges: discard region 7851:13699 - no confusion in best edges Annotating repeats in reads for tig 1397/113047. Annotated with 1659 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10057 - closest 5' read 611814 ( +0) 0:6431 ( -3626) saved region 0:10057 - closest 3' read 187559 ( -4071) 4071:10057 ( +0) search for confused edges: tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 56472 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1157 erate 0.0588 score 1088.97 - absdiff 2999.81 percdiff 115.8731 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 69514 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2332 erate 0.0343 score 2252.01 - absdiff 1836.76 percdiff 57.9348 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 73835 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3048 erate 0.0532 score 2885.85 - absdiff 1202.93 percdiff 34.4944 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 75365 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1409 erate 0.0554 score 1330.94 - absdiff 2757.83 percdiff 101.7704 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 75366 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1400 erate 0.0496 score 1330.56 - absdiff 2758.21 percdiff 101.7916 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 86124 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2823 erate 0.0465 score 2691.73 - absdiff 1397.04 percdiff 41.2077 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 125239 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 645 erate 0.0558 score 609.01 - absdiff 3479.77 percdiff 148.1450 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 137335 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3256 erate 0.0666 score 3039.15 - absdiff 1049.62 percdiff 29.4510 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 201858 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3196 erate 0.0663 score 2984.11 - absdiff 1104.67 percdiff 31.2368 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 212668 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 1937 erate 0.0681 score 1805.09 - absdiff 2283.68 percdiff 77.4936 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 336357 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3710 erate 0.0400 score 3561.60 - absdiff 527.17 percdiff 13.7817 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 478039 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2356 erate 0.0531 score 2230.90 - absdiff 1857.88 percdiff 58.7967 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 532060 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3295 erate 0.0610 score 3094.01 - absdiff 994.77 percdiff 27.6987 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 546407 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3261 erate 0.0549 score 3081.97 - absdiff 1006.80 percdiff 28.0809 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 556591 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2659 erate 0.0365 score 2561.95 - absdiff 1526.83 percdiff 45.9147 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 576860 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 792 erate 0.0442 score 756.99 - absdiff 3331.78 percdiff 137.5130 tig 1397 read 611814 pos 0-6431 NOT confused by 3' edge to read 576861 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 792 erate 0.0480 score 753.98 - absdiff 3334.79 percdiff 137.7228 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 628000 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 2276 erate 0.0365 score 2192.93 - absdiff 1895.85 percdiff 60.3610 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 641325 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3742 erate 0.0564 score 3530.95 - absdiff 557.82 percdiff 14.6416 tig 1397 read 611814 pos 0-6431 IS confused by 3' edge to read 697592 - best edge read 238313 len 4324 erate 0.0544 score 4088.77 - alt edge len 3373 erate 0.0741 score 3123.06 - absdiff 965.71 percdiff 26.7814 saved region 0:10057 - 13 best edges are potentially confused Annotating repeats in reads for tig 1398/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11783:18075 - closest 5' read 392088 ( +0) 11783:18018 ( -57) saved region 11783:18075 - closest 3' read 96816 ( -1094) 12877:18075 ( +0) search for confused edges: tig 1398 read 84311 pos 12924-20841 IS confused by 3' edge to read 416133 - best edge read 485358 len 2233 erate 0.0349 score 2155.07 - alt edge len 1604 erate 0.0393 score 1540.96 - absdiff 614.11 percdiff 33.2305 tig 1398 read 84311 pos 12924-20841 IS confused by 3' edge to read 416134 - best edge read 485358 len 2233 erate 0.0349 score 2155.07 - alt edge len 1613 erate 0.0322 score 1561.06 - absdiff 594.01 percdiff 31.9691 tig 1398 read 84311 pos 12924-20841 IS confused by 3' edge to read 416135 - best edge read 485358 len 2233 erate 0.0349 score 2155.07 - alt edge len 1586 erate 0.0353 score 1530.01 - absdiff 625.05 percdiff 33.9235 saved region 11783:18075 - 3 best edges are potentially confused break tig 1398 into up to 3 pieces: 0 11283 unique (length 11283) 11283 18575 repeat (length 7292) 18575 29129 unique (length 10554) Creating Unitig 113427 Creating Unitig 113428 Creating Unitig 113429 For tig 1398 unique region 0 11283 - 0/ 23 reads repeat/unique - unitig 113427 created. For tig 1398 repeat region 11283 18575 - 44/ 0 reads repeat/unique - unitig 113428 created. For tig 1398 unique region 18575 29129 - 0/ 14 reads repeat/unique - unitig 113429 created. Annotating repeats in reads for tig 1401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1402/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 8827:9494 - contained in read 632482 5742- 11089 discard region 17644:20891 - contained in read 444475 14624- 24054 thickest edges to the repeat regions: saved region 14624:16189 - closest read 444475 ( +0) 14624:24054 ( +7865) (contained) saved region 14624:16189 - closest 5' read 444475 ( +0) 14624:24054 ( +7865) saved region 14624:16189 - closest 3' read 444475 ( +0) 14624:24054 ( +7865) search for confused edges: discard region 14624:16189 - no confusion in best edges Annotating repeats in reads for tig 1403/113047. Annotated with 295 overlaps. Scan reads to discard spanned repeats. discard region 3852:11075 - contained in read 625534 648- 11075 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1404/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10567:15560 - closest read 510454 ( +1763) 8804:15595 ( +35) (contained) saved region 10567:15560 - closest read 510452 ( +1757) 8810:15601 ( +41) (contained) saved region 10567:15560 - closest read 510453 ( +1728) 8839:15598 ( +38) (contained) saved region 10567:15560 - closest read 718357 ( +0) 10567:15609 ( +49) (contained) saved region 10567:15560 - closest 5' read 718357 ( +0) 10567:15609 ( +49) saved region 10567:15560 - closest 3' read 510454 ( +1763) 8804:15595 ( +35) search for confused edges: discard region 10567:15560 - no confusion in best edges Annotating repeats in reads for tig 1410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1413/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6101:7514 - contained in read 552439 1574- 7514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1416/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 7405:9930 - contained in read 709842 4910- 12037 discard region 10342:13426 - contained in read 528357 7823- 17298 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1427/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 4967:5997 - contained in read 454275 1082- 6860 thickest edges to the repeat regions: saved region 6036:8837 - closest 5' read 206533 ( +3317) 2719:8583 ( -254) saved region 6036:8837 - closest 3' read 664209 ( -15) 6051:14581 ( +5744) search for confused edges: tig 1427 read 206532 pos 2627-8550 IS confused by 5' edge to read 208052 - best edge read 664209 len 2493 erate 0.0424 score 2387.30 - alt edge len 1502 erate 0.0382 score 1444.62 - absdiff 942.67 percdiff 49.2011 tig 1427 read 206532 pos 2627-8550 IS confused by 5' edge to read 228945 - best edge read 664209 len 2493 erate 0.0424 score 2387.30 - alt edge len 2493 erate 0.0443 score 2382.56 - absdiff 4.74 percdiff 0.1986 tig 1427 read 206532 pos 2627-8550 IS confused by 5' edge to read 654514 - best edge read 664209 len 2493 erate 0.0424 score 2387.30 - alt edge len 2493 erate 0.0504 score 2367.35 - absdiff 19.94 percdiff 0.8389 saved region 6036:8837 - 3 best edges are potentially confused break tig 1427 into up to 3 pieces: 0 5536 unique (length 5536) 5536 9337 repeat (length 3801) 9337 17449 unique (length 8112) Creating Unitig 113430 Creating Unitig 113431 Creating Unitig 113432 For tig 1427 unique region 0 5536 - 0/ 18 reads repeat/unique - unitig 113430 created. For tig 1427 repeat region 5536 9337 - 7/ 0 reads repeat/unique - unitig 113432 created. For tig 1427 unique region 9337 17449 - 0/ 20 reads repeat/unique - unitig 113431 created. Annotating repeats in reads for tig 1438/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 7412:12904 - contained in read 18222 6231- 12904 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1442/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 0:5773 - contained in read 659609 0- 11688 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1443/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11169:17580 - closest read 645401 ( +0) 11169:19847 ( +2267) (contained) saved region 11169:17580 - closest 5' read 645401 ( +0) 11169:19847 ( +2267) saved region 11169:17580 - closest 3' read 645401 ( +0) 11169:19847 ( +2267) search for confused edges: tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 127001 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 1119 erate 0.0268 score 1089.01 - absdiff 4025.82 percdiff 129.7848 tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 169712 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 1317 erate 0.0373 score 1267.88 - absdiff 3846.96 percdiff 120.5431 tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 267562 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 2821 erate 0.0314 score 2732.42 - absdiff 2382.41 percdiff 60.7196 tig 1443 read 350522 pos 10116-16425 NOT confused by 3' edge to read 437815 - best edge read 645401 len 5198 erate 0.0160 score 5114.83 - alt edge len 2382 erate 0.0261 score 2319.83 - absdiff 2795.00 percdiff 75.1884 discard region 11169:17580 - no confusion in best edges Annotating repeats in reads for tig 1450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1451/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2451:4865 - closest read 1215 ( +2451) 0:4865 ( +0) (contained) saved region 2451:4865 - closest read 273307 ( +497) 1954:7919 ( +3054) (contained) saved region 2451:4865 - closest read 273308 ( +482) 1969:7906 ( +3041) (contained) saved region 2451:4865 - closest read 273309 ( +118) 2333:7910 ( +3045) (contained) saved region 2451:4865 - closest 5' read 273307 ( +497) 1954:7919 ( +3054) saved region 2451:4865 - closest 3' read 1215 ( +2451) 0:4865 ( +0) search for confused edges: discard region 2451:4865 - no confusion in best edges Annotating repeats in reads for tig 1452/113047. Annotated with 209 overlaps. Scan reads to discard spanned repeats. discard region 405:14999 - contained in read 586910 0- 16601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1456/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 22722:25195 - contained in read 618697 20166- 26866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1457/113047. Annotated with 225 overlaps. Scan reads to discard spanned repeats. discard region 27756:30473 - contained in read 95411 26398- 34317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1462/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19920:23734 - closest read 13695 ( +2724) 17196:23734 ( +0) (contained) saved region 19920:23734 - closest 5' read 13695 ( +2724) 17196:23734 ( +0) saved region 19920:23734 - closest 3' read 13695 ( +2724) 17196:23734 ( +0) search for confused edges: discard region 19920:23734 - no confusion in best edges Annotating repeats in reads for tig 1463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1465/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 0:7097 - contained in read 578689 0- 9844 discard region 7420:10852 - contained in read 15531 2758- 14121 discard region 12473:14121 - contained in read 15531 2758- 14121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1471/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7896:8655 - contained in read 227998 5752- 11502 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1473/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 1839:7291 - contained in read 23253 152- 7291 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1476/113047. Annotated with 158 overlaps. Scan reads to discard spanned repeats. discard region 23642:29719 - contained in read 46817 21631- 29771 thickest edges to the repeat regions: saved region 7532:12808 - closest read 353963 ( +378) 7154:13336 ( +528) (contained) saved region 7532:12808 - closest read 353964 ( +0) 7532:12808 ( +0) (contained) saved region 7532:12808 - closest 5' read 353963 ( +378) 7154:13336 ( +528) saved region 7532:12808 - closest 3' read 353963 ( +378) 7154:13336 ( +528) saved region 21631:22529 - closest read 160257 ( +4881) 16750:22539 ( +10) (contained) saved region 21631:22529 - closest read 46817 ( +0) 21631:29771 ( +7242) (contained) saved region 21631:22529 - closest 5' read 46817 ( +0) 21631:29771 ( +7242) saved region 21631:22529 - closest 3' read 160257 ( +4881) 16750:22539 ( +10) search for confused edges: tig 1476 read 353965 pos 8205-13337 IS confused by 3' edge to read 55140 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 4250 erate 0.0573 score 4006.47 - absdiff 64.28 percdiff 1.5917 tig 1476 read 353965 pos 8205-13337 NOT confused by 3' edge to read 570206 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 888 erate 0.0580 score 836.50 - absdiff 3234.26 percdiff 131.8156 tig 1476 read 353965 pos 8205-13337 NOT confused by 3' edge to read 570207 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 889 erate 0.0534 score 841.53 - absdiff 3229.23 percdiff 131.4757 tig 1476 read 353965 pos 8205-13337 NOT confused by 3' edge to read 607259 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 646 erate 0.0538 score 611.25 - absdiff 3459.51 percdiff 147.7792 tig 1476 read 353965 pos 8205-13337 IS confused by 3' edge to read 711397 - best edge read 468388 len 4255 erate 0.0433 score 4070.76 - alt edge len 4252 erate 0.0525 score 4028.77 - absdiff 41.99 percdiff 1.0368 saved region 7532:12808 - 2 best edges are potentially confused discard region 21631:22529 - no confusion in best edges break tig 1476 into up to 3 pieces: 0 7032 unique (length 7032) 7032 13308 repeat (length 6276) 13308 29771 unique (length 16463) Creating Unitig 113433 Creating Unitig 113434 Creating Unitig 113435 For tig 1476 unique region 0 7032 - 0/ 4 reads repeat/unique - unitig 113433 created. For tig 1476 repeat region 7032 13308 - 21/ 0 reads repeat/unique - unitig 113435 created. For tig 1476 unique region 13308 29771 - 0/ 26 reads repeat/unique - unitig 113434 created. Annotating repeats in reads for tig 1478/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:983 - contained in read 658816 0- 1639 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1480/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 10874:15057 - contained in read 364497 8665- 17796 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1481/113047. Annotated with 747 overlaps. Scan reads to discard spanned repeats. discard region 0:6415 - contained in read 537046 0- 8063 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1482/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:2319 - contained in read 31807 0- 5938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1487/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 6124:9180 - contained in read 37651 0- 12043 thickest edges to the repeat regions: saved region 24057:26206 - closest read 65724 ( +1068) 22989:26423 ( +217) (contained) saved region 24057:26206 - closest 5' read 65724 ( +1068) 22989:26423 ( +217) saved region 24057:26206 - closest 3' read 65724 ( +1068) 22989:26423 ( +217) search for confused edges: discard region 24057:26206 - no confusion in best edges Annotating repeats in reads for tig 1489/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13988:14547 - contained in read 242486 13288- 23073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1490/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:2784 - contained in read 383125 0- 6431 discard region 4746:3554 - contained in read 383125 0- 6431 discard region 5759:6431 - contained in read 264832 629- 8861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1491/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 16210:19634 - contained in read 432973 8271- 20572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1495/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 592:2143 - closest read 646020 ( +592) 0:2143 ( +0) (contained) saved region 592:2143 - closest read 365130 ( +15) 577:2143 ( +0) (contained) saved region 592:2143 - closest read 368242 ( +12) 580:10446 ( +8303) (contained) saved region 592:2143 - closest 5' read 368242 ( +12) 580:10446 ( +8303) saved region 592:2143 - closest 3' read 646020 ( +592) 0:2143 ( +0) search for confused edges: discard region 592:2143 - no confusion in best edges Annotating repeats in reads for tig 1497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1505/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 17722:18903 - contained in read 441945 11328- 22623 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1507/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6890:7576 - contained in read 422712 2602- 8947 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1508/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6121:7250 - closest 5' read 595510 ( +6121) 0:7225 ( -25) saved region 6121:7250 - closest 3' read 119818 ( -489) 6610:10797 ( +3547) search for confused edges: discard region 6121:7250 - no confusion in best edges Annotating repeats in reads for tig 1510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1522/113047. Annotated with 809 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6149:11488 - closest 5' read 174022 ( +2217) 3932:11318 ( -170) saved region 6149:11488 - closest 3' read 313456 ( -458) 6607:13671 ( +2183) saved region 13092:18204 - closest read 642891 ( +0) 13092:20764 ( +2560) (contained) saved region 13092:18204 - closest 5' read 642891 ( +0) 13092:20764 ( +2560) saved region 13092:18204 - closest 3' read 642891 ( +0) 13092:20764 ( +2560) search for confused edges: tig 1522 read 174025 pos 3974-11298 IS confused by 3' edge to read 40951 - best edge read 313455 len 4639 erate 0.0660 score 4332.83 - alt edge len 4349 erate 0.0593 score 4091.10 - absdiff 241.72 percdiff 5.7389 tig 1522 read 174025 pos 3974-11298 IS confused by 3' edge to read 284289 - best edge read 313455 len 4639 erate 0.0660 score 4332.83 - alt edge len 4416 erate 0.0628 score 4138.68 - absdiff 194.15 percdiff 4.5836 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 29357 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2042 erate 0.0654 score 1908.45 - absdiff 2377.67 percdiff 76.7662 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 29358 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2040 erate 0.0579 score 1921.88 - absdiff 2364.24 percdiff 76.1675 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 127603 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 3015 erate 0.0322 score 2917.92 - absdiff 1368.21 percdiff 37.9845 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 145079 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2202 erate 0.0568 score 2076.93 - absdiff 2209.20 percdiff 69.4384 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 175693 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4257 erate 0.0430 score 4073.95 - absdiff 212.18 percdiff 5.0760 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 242202 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 926 erate 0.0562 score 873.96 - absdiff 3412.17 percdiff 132.2524 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 253424 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 611 erate 0.0462 score 582.77 - absdiff 3703.35 percdiff 152.1229 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 280576 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 3769 erate 0.0378 score 3626.53 - absdiff 659.59 percdiff 16.6719 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 335604 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2395 erate 0.0401 score 2298.96 - absdiff 1987.17 percdiff 60.3535 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 335606 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2401 erate 0.0329 score 2322.01 - absdiff 1964.12 percdiff 59.4455 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 338205 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4275 erate 0.0370 score 4116.82 - absdiff 169.30 percdiff 4.0296 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 340263 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4289 erate 0.0156 score 4222.09 - absdiff 64.03 percdiff 1.5052 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 393610 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 931 erate 0.0516 score 882.96 - absdiff 3403.17 percdiff 131.6738 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 448733 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4293 erate 0.0273 score 4175.80 - absdiff 110.32 percdiff 2.6076 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498322 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4292 erate 0.0165 score 4221.18 - absdiff 64.94 percdiff 1.5268 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498323 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4367 erate 0.0284 score 4242.98 - absdiff 43.15 percdiff 1.0118 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498472 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4290 erate 0.0242 score 4186.18 - absdiff 99.94 percdiff 2.3593 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 498473 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 4307 erate 0.0269 score 4191.14 - absdiff 94.98 percdiff 2.2409 tig 1522 read 313455 pos 6621-13407 IS confused by 5' edge to read 509401 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 2758 erate 0.0344 score 2663.12 - absdiff 1623.00 percdiff 46.7101 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 556271 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 511 erate 0.0587 score 481.00 - absdiff 3805.12 percdiff 159.6399 tig 1522 read 313455 pos 6621-13407 NOT confused by 5' edge to read 689184 - best edge read 174025 len 4589 erate 0.0660 score 4286.13 - alt edge len 1664 erate 0.0270 score 1619.07 - absdiff 2667.05 percdiff 90.3290 saved region 6149:11488 - 15 best edges are potentially confused discard region 13092:18204 - no confusion in best edges break tig 1522 into up to 3 pieces: 0 5649 unique (length 5649) 5649 11988 repeat (length 6339) 11988 20764 unique (length 8776) Creating Unitig 113436 Creating Unitig 113437 Creating Unitig 113438 For tig 1522 unique region 0 5649 - 0/ 22 reads repeat/unique - unitig 113436 created. For tig 1522 repeat region 5649 11988 - 4/ 0 reads repeat/unique - unitig 113438 created. For tig 1522 unique region 11988 20764 - 0/ 42 reads repeat/unique - unitig 113437 created. Annotating repeats in reads for tig 1523/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9978:12498 - contained in read 481453 4360- 13014 discard region 15242:16249 - contained in read 109282 10599- 16249 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1525/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6448:6998 - contained in read 556624 0- 7904 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1527/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3645:8244 - contained in read 172844 2088- 10359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1534/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1540/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11623:14430 - closest read 633701 ( +5272) 6351:14733 ( +303) (contained) saved region 11623:14430 - closest read 633697 ( +5247) 6376:14767 ( +337) (contained) saved region 11623:14430 - closest read 633700 ( +5238) 6385:14753 ( +323) (contained) saved region 11623:14430 - closest read 69326 ( +3242) 8381:14738 ( +308) (contained) saved region 11623:14430 - closest read 69328 ( +3069) 8554:14544 ( +114) (contained) saved region 11623:14430 - closest read 69327 ( +132) 11491:14746 ( +316) (contained) saved region 11623:14430 - closest read 633703 ( +0) 11623:16376 ( +1946) (contained) saved region 11623:14430 - closest 5' read 633703 ( +0) 11623:16376 ( +1946) saved region 11623:14430 - closest 3' read 633701 ( +5272) 6351:14733 ( +303) saved region 15660:20210 - closest 5' read 28891 ( +906) 14754:20160 ( -50) saved region 15660:20210 - closest 3' read 654252 ( -116) 15776:25926 ( +5716) search for confused edges: discard region 11623:14430 - no confusion in best edges discard region 15660:20210 - no confusion in best edges Annotating repeats in reads for tig 1541/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6679:7980 - contained in read 478807 4975- 13215 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1544/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 9003:16784 - contained in read 18606 7740- 16784 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1549/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1550/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 17203:18963 - contained in read 172847 8203- 20447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1551/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 19453:18446 - contained in read 326304 14870- 21821 thickest edges to the repeat regions: saved region 13801:16168 - closest 5' read 562853 ( +6865) 6936:15493 ( -675) saved region 13801:16168 - closest 3' read 376810 ( -39) 13840:18563 ( +2395) search for confused edges: discard region 13801:16168 - no confusion in best edges Annotating repeats in reads for tig 1554/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 2029:3015 - contained in read 135232 0- 3866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1561/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1565/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5386:9570 - closest 5' read 569997 ( +5386) 0:9566 ( -4) saved region 5386:9570 - closest 3' read 519163 ( -2939) 8325:14489 ( +4919) search for confused edges: discard region 5386:9570 - no confusion in best edges Annotating repeats in reads for tig 1568/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 10131:11352 - contained in read 139731 4511- 12706 discard region 15259:16657 - contained in read 411871 13813- 16657 thickest edges to the repeat regions: saved region 2095:6153 - closest read 655546 ( +352) 1743:6153 ( +0) (contained) saved region 2095:6153 - closest 5' read 655546 ( +352) 1743:6153 ( +0) saved region 2095:6153 - closest 3' read 655546 ( +352) 1743:6153 ( +0) search for confused edges: tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 286848 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 538 erate 0.0642 score 503.46 - absdiff 834.88 percdiff 90.6590 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 499850 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 1036 erate 0.0613 score 972.49 - absdiff 365.85 percdiff 31.6635 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 499851 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 963 erate 0.0732 score 892.51 - absdiff 445.83 percdiff 39.9696 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 550907 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 1383 erate 0.0528 score 1309.98 - absdiff 28.36 percdiff 2.1418 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 605327 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 688 erate 0.0465 score 656.01 - absdiff 682.33 percdiff 68.4265 tig 1568 read 581286 pos 4522-13169 IS confused by 3' edge to read 716638 - best edge read 655546 len 1407 erate 0.0488 score 1338.34 - alt edge len 1132 erate 0.0645 score 1058.99 - absdiff 279.35 percdiff 23.3053 saved region 2095:6153 - 6 best edges are potentially confused break tig 1568 into up to 3 pieces: 0 1595 unique (length 1595) 1595 6653 repeat (length 5058) 6653 16657 unique (length 10004) Creating Unitig 113439 Creating Unitig 113440 Creating Unitig 113441 For tig 1568 unique region 0 1595 - 0/ 2 reads repeat/unique - unitig 113439 created. For tig 1568 repeat region 1595 6653 - 19/ 0 reads repeat/unique - unitig 113440 created. For tig 1568 unique region 6653 16657 - 0/ 9 reads repeat/unique - unitig 113441 created. Annotating repeats in reads for tig 1572/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 0:824 - contained in read 627900 0- 5862 discard region 5211:5792 - contained in read 305816 8- 6305 discard region 8058:10574 - contained in read 304903 2880- 11232 thickest edges to the repeat regions: saved region 18411:22469 - closest read 52038 ( +1142) 17269:22581 ( +112) (contained) saved region 18411:22469 - closest read 485629 ( +1019) 17392:22469 ( +0) (contained) saved region 18411:22469 - closest 5' read 52038 ( +1142) 17269:22581 ( +112) saved region 18411:22469 - closest 3' read 52038 ( +1142) 17269:22581 ( +112) search for confused edges: discard region 18411:22469 - no confusion in best edges Annotating repeats in reads for tig 1573/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 34249:40196 - contained in read 267649 31896- 42728 thickest edges to the repeat regions: saved region 12640:29950 - closest 5' read 379867 ( +0) 12640:23839 ( -6111) saved region 12640:29950 - closest 3' read 555639 ( -5128) 17768:32000 ( +2050) saved region 42011:43047 - closest read 47963 ( +4431) 37580:43047 ( +0) (contained) saved region 42011:43047 - closest 5' read 47963 ( +4431) 37580:43047 ( +0) saved region 42011:43047 - closest 3' read 47963 ( +4431) 37580:43047 ( +0) search for confused edges: tig 1573 read 555639 pos 17768-32000 NOT confused by 3' edge to read 564662 - best edge read 173914 len 8689 erate 0.0516 score 8240.65 - alt edge len 2663 erate 0.0218 score 2604.95 - absdiff 5635.70 percdiff 103.9261 discard region 12640:29950 - no confusion in best edges discard region 42011:43047 - no confusion in best edges Annotating repeats in reads for tig 1578/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 11730:12363 - contained in read 227211 3336- 13083 discard region 14738:16765 - contained in read 239805 12790- 20342 discard region 26612:31070 - contained in read 444712 22986- 32595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1581/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3293:1293 - contained in read 492441 0- 6245 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1590/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7838:11299 - contained in read 106944 854- 11299 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1591/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 0:6065 - contained in read 102630 0- 9656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1597/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. discard region 19743:20623 - contained in read 663186 14301- 22096 discard region 26332:29612 - contained in read 366155 25748- 33288 thickest edges to the repeat regions: saved region 6145:9815 - closest read 201356 ( +0) 6145:12847 ( +3032) (contained) saved region 6145:9815 - closest 5' read 201356 ( +0) 6145:12847 ( +3032) saved region 6145:9815 - closest 3' read 201356 ( +0) 6145:12847 ( +3032) saved region 13320:14552 - closest read 130727 ( +0) 13320:20007 ( +5455) (contained) saved region 13320:14552 - closest 5' read 130727 ( +0) 13320:20007 ( +5455) saved region 13320:14552 - closest 3' read 130727 ( +0) 13320:20007 ( +5455) saved region 32949:34737 - closest read 298187 ( +1822) 31127:34737 ( +0) (contained) saved region 32949:34737 - closest read 57140 ( +308) 32641:39138 ( +4401) (contained) saved region 32949:34737 - closest read 57136 ( +306) 32643:39125 ( +4388) (contained) saved region 32949:34737 - closest read 57138 ( +306) 32643:38807 ( +4070) (contained) saved region 32949:34737 - closest read 57139 ( +299) 32650:38911 ( +4174) (contained) saved region 32949:34737 - closest read 57137 ( +294) 32655:39101 ( +4364) (contained) saved region 32949:34737 - closest 5' read 57140 ( +308) 32641:39138 ( +4401) saved region 32949:34737 - closest 3' read 298187 ( +1822) 31127:34737 ( +0) search for confused edges: tig 1597 read 211420 pos 1640-8489 IS confused by 5' edge to read 110609 - best edge read 201356 len 2292 erate 0.0523 score 2172.13 - alt edge len 2176 erate 0.0396 score 2089.83 - absdiff 82.30 percdiff 3.8620 saved region 6145:9815 - 1 best edges are potentially confused discard region 13320:14552 - no confusion in best edges discard region 32949:34737 - no confusion in best edges break tig 1597 into up to 3 pieces: 0 5645 unique (length 5645) 5645 10315 repeat (length 4670) 10315 39138 unique (length 28823) Creating Unitig 113442 Creating Unitig 113443 Creating Unitig 113444 For tig 1597 unique region 0 5645 - 0/ 6 reads repeat/unique - unitig 113442 created. For tig 1597 repeat region 5645 10315 - 7/ 0 reads repeat/unique - unitig 113444 created. For tig 1597 unique region 10315 39138 - 0/ 26 reads repeat/unique - unitig 113443 created. Annotating repeats in reads for tig 1599/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 29844:30641 - contained in read 618936 19625- 31193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1600/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1601/113047. Annotated with 391 overlaps. Scan reads to discard spanned repeats. discard region 6792:8102 - contained in read 237075 2631- 13449 thickest edges to the repeat regions: saved region 12592:20985 - closest 5' read 424143 ( +9) 12583:20966 ( -19) saved region 12592:20985 - closest 3' read 494072 ( -4001) 16593:20985 ( +0) search for confused edges: discard region 12592:20985 - no confusion in best edges Annotating repeats in reads for tig 1602/113047. Annotated with 2179 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 368:11471 - closest 5' read 260751 ( +368) 0:8867 ( -2604) saved region 368:11471 - closest 3' read 404935 ( -4094) 4462:11471 ( +0) search for confused edges: tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 238313 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 6032 erate 0.0630 score 5651.98 - absdiff 934.09 percdiff 15.2654 tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 259113 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 6542 erate 0.0628 score 6131.16 - absdiff 454.92 percdiff 7.1543 tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 637543 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 5432 erate 0.0694 score 5055.02 - absdiff 1531.06 percdiff 26.3044 tig 1602 read 260751 pos 0-8867 IS confused by 5' edge to read 643871 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 6489 erate 0.0716 score 6024.39 - absdiff 561.69 percdiff 8.9083 tig 1602 read 260751 pos 0-8867 NOT confused by 5' edge to read 671333 - best edge read 73835 len 7078 erate 0.0695 score 6586.08 - alt edge len 4319 erate 0.0458 score 4121.19 - absdiff 2464.89 percdiff 46.0414 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 56472 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 2203 erate 0.0558 score 2080.07 - absdiff 4447.86 percdiff 103.3424 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 69514 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 3410 erate 0.0430 score 3263.37 - absdiff 3264.56 percdiff 66.6829 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 86124 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 3896 erate 0.0683 score 3629.90 - absdiff 2898.03 percdiff 57.0600 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 532060 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 4381 erate 0.0636 score 4102.37 - absdiff 2425.56 percdiff 45.6349 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 545260 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 2863 erate 0.0457 score 2732.16 - absdiff 3795.77 percdiff 81.9813 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 545264 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 2843 erate 0.0469 score 2709.66 - absdiff 3818.27 percdiff 82.6680 tig 1602 read 73835 pos 1267-9165 NOT confused by 5' edge to read 697592 - best edge read 260751 len 6981 erate 0.0649 score 6527.93 - alt edge len 4426 erate 0.0702 score 4115.29 - absdiff 2412.64 percdiff 45.3366 tig 1602 read 212668 pos 2727-11147 NOT confused by 5' edge to read 114215 - best edge read 73835 len 5768 erate 0.0526 score 5464.60 - alt edge len 2992 erate 0.0560 score 2824.45 - absdiff 2640.16 percdiff 63.7022 tig 1602 read 212668 pos 2727-11147 NOT confused by 5' edge to read 114216 - best edge read 73835 len 5768 erate 0.0526 score 5464.60 - alt edge len 3022 erate 0.0594 score 2842.49 - absdiff 2622.11 percdiff 63.1294 saved region 368:11471 - 4 best edges are potentially confused Annotating repeats in reads for tig 1603/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6739:7745 - closest 5' read 114673 ( +6739) 0:7579 ( -166) saved region 6739:7745 - closest 3' read 533440 ( -145) 6884:14045 ( +6300) search for confused edges: discard region 6739:7745 - no confusion in best edges Annotating repeats in reads for tig 1604/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3229:8163 - closest 5' read 482479 ( +2531) 698:7756 ( -407) saved region 3229:8163 - closest 3' read 655880 ( -155) 3384:11226 ( +3063) search for confused edges: tig 1604 read 678126 pos 3412-11339 IS confused by 5' edge to read 451579 - best edge read 482479 len 4305 erate 0.0545 score 4070.38 - alt edge len 2807 erate 0.0590 score 2641.39 - absdiff 1428.99 percdiff 42.5817 tig 1604 read 678126 pos 3412-11339 IS confused by 5' edge to read 653230 - best edge read 482479 len 4305 erate 0.0545 score 4070.38 - alt edge len 3192 erate 0.0544 score 3018.36 - absdiff 1052.02 percdiff 29.6815 saved region 3229:8163 - 2 best edges are potentially confused break tig 1604 into up to 3 pieces: 0 2729 unique (length 2729) 2729 8663 repeat (length 5934) 8663 22505 unique (length 13842) Creating Unitig 113445 Creating Unitig 113446 Creating Unitig 113447 For tig 1604 unique region 0 2729 - 0/ 9 reads repeat/unique - unitig 113445 created. For tig 1604 repeat region 2729 8663 - 21/ 0 reads repeat/unique - unitig 113446 created. For tig 1604 unique region 8663 22505 - 0/ 23 reads repeat/unique - unitig 113447 created. Annotating repeats in reads for tig 1608/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 8074:8586 - contained in read 491849 2221- 9611 discard region 21988:23081 - contained in read 575127 12533- 24709 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1610/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 16017:14885 - contained in read 410956 9647- 15667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1612/113047. Annotated with 142 overlaps. Scan reads to discard spanned repeats. discard region 7195:8137 - contained in read 226181 3- 8996 discard region 8338:9198 - contained in read 340881 5920- 10953 discard region 13085:15426 - contained in read 467982 9303- 18132 thickest edges to the repeat regions: saved region 9372:12797 - closest read 467982 ( +69) 9303:18132 ( +5335) (contained) saved region 9372:12797 - closest read 467980 ( +68) 9304:18140 ( +5343) (contained) saved region 9372:12797 - closest read 467983 ( +61) 9311:18135 ( +5338) (contained) saved region 9372:12797 - closest read 467979 ( +0) 9372:17117 ( +4320) (contained) saved region 9372:12797 - closest 5' read 467980 ( +68) 9304:18140 ( +5343) saved region 9372:12797 - closest 3' read 467982 ( +69) 9303:18132 ( +5335) search for confused edges: discard region 9372:12797 - no confusion in best edges Annotating repeats in reads for tig 1614/113047. Annotated with 80 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5077:18276 - closest 5' read 489919 ( +0) 5077:12811 ( -5465) saved region 5077:18276 - closest 3' read 41419 ( -4233) 9310:18276 ( +0) search for confused edges: tig 1614 read 544251 pos 2515-11884 IS confused by 5' edge to read 548005 - best edge read 218860 len 4165 erate 0.0212 score 4076.70 - alt edge len 2671 erate 0.0151 score 2630.67 - absdiff 1446.03 percdiff 43.1178 saved region 5077:18276 - 1 best edges are potentially confused break tig 1614 into up to 2 pieces: 0 4577 unique (length 4577) 4577 18276 repeat (length 13699) Creating Unitig 113448 Creating Unitig 113449 For tig 1614 unique region 0 4577 - 0/ 9 reads repeat/unique - unitig 113448 created. For tig 1614 repeat region 4577 18276 - 17/ 0 reads repeat/unique - unitig 113449 created. Annotating repeats in reads for tig 1616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1626/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13818:13111 - contained in read 684787 3085- 14880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1631/113047. Annotated with 771 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3237:23047 - closest 5' read 623873 ( +3237) 0:17654 ( -5393) saved region 3237:23047 - closest 3' read 660504 ( -7922) 11159:24166 ( +1119) search for confused edges: tig 1631 read 623872 pos 3450-21365 NOT confused by 5' edge to read 657935 - best edge read 158241 len 9283 erate 0.0246 score 9054.64 - alt edge len 3298 erate 0.0246 score 3216.87 - absdiff 5837.77 percdiff 95.1435 tig 1631 read 623872 pos 3450-21365 NOT confused by 5' edge to read 657938 - best edge read 158241 len 9283 erate 0.0246 score 9054.64 - alt edge len 3293 erate 0.0216 score 3221.87 - absdiff 5832.77 percdiff 95.0232 tig 1631 read 158241 pos 4171-17118 NOT confused by 5' edge to read 52880 - best edge read 22465 len 9287 erate 0.0255 score 9050.18 - alt edge len 603 erate 0.0367 score 580.87 - absdiff 8469.31 percdiff 175.8751 tig 1631 read 158241 pos 4171-17118 NOT confused by 5' edge to read 657935 - best edge read 22465 len 9287 erate 0.0255 score 9050.18 - alt edge len 4136 erate 0.0260 score 4028.46 - absdiff 5021.72 percdiff 76.7926 tig 1631 read 158241 pos 4171-17118 NOT confused by 5' edge to read 657938 - best edge read 22465 len 9287 erate 0.0255 score 9050.18 - alt edge len 4131 erate 0.0233 score 4034.75 - absdiff 5015.43 percdiff 76.6597 tig 1631 read 22465 pos 5272-20105 NOT confused by 5' edge to read 657935 - best edge read 623872 len 8916 erate 0.0158 score 8775.13 - alt edge len 2433 erate 0.0235 score 2375.82 - absdiff 6399.30 percdiff 114.7759 tig 1631 read 22465 pos 5272-20105 NOT confused by 5' edge to read 657938 - best edge read 623872 len 8916 erate 0.0158 score 8775.13 - alt edge len 2428 erate 0.0223 score 2373.86 - absdiff 6401.27 percdiff 114.8315 tig 1631 read 259871 pos 8460-16960 NOT confused by 5' edge to read 657935 - best edge read 503608 len 7520 erate 0.0233 score 7344.78 - alt edge len 2412 erate 0.0182 score 2368.10 - absdiff 4976.68 percdiff 102.4759 tig 1631 read 259871 pos 8460-16960 NOT confused by 5' edge to read 657938 - best edge read 503608 len 7520 erate 0.0233 score 7344.78 - alt edge len 2407 erate 0.0179 score 2363.91 - absdiff 4980.87 percdiff 102.6063 tig 1631 read 503608 pos 10513-19870 IS confused by 5' edge to read 657935 - best edge read 623872 len 1354 erate 0.0229 score 1322.99 - alt edge len 593 erate 0.0371 score 571.00 - absdiff 751.99 percdiff 79.4083 tig 1631 read 503608 pos 10513-19870 IS confused by 5' edge to read 657938 - best edge read 623872 len 1354 erate 0.0229 score 1322.99 - alt edge len 588 erate 0.0426 score 562.95 - absdiff 760.04 percdiff 80.6007 tig 1631 read 259869 pos 10760-19494 NOT confused by 3' edge to read 85363 - best edge read 684273 len 5138 erate 0.0466 score 4898.57 - alt edge len 616 erate 0.0747 score 569.98 - absdiff 4328.58 percdiff 158.3082 tig 1631 read 259869 pos 10760-19494 NOT confused by 5' edge to read 657935 - best edge read 259871 len 8285 erate 0.0114 score 8190.55 - alt edge len 2359 erate 0.0208 score 2309.93 - absdiff 5880.62 percdiff 112.0066 tig 1631 read 259869 pos 10760-19494 NOT confused by 5' edge to read 657938 - best edge read 259871 len 8285 erate 0.0114 score 8190.55 - alt edge len 2354 erate 0.0191 score 2309.04 - absdiff 5881.51 percdiff 112.0332 tig 1631 read 684273 pos 12758-22953 NOT confused by 5' edge to read 657935 - best edge read 22465 len 6279 erate 0.0246 score 6124.54 - alt edge len 3755 erate 0.0174 score 3689.66 - absdiff 2434.87 percdiff 49.6194 tig 1631 read 684273 pos 12758-22953 NOT confused by 5' edge to read 657938 - best edge read 22465 len 6279 erate 0.0246 score 6124.54 - alt edge len 3750 erate 0.0158 score 3690.75 - absdiff 2433.79 percdiff 49.5918 tig 1631 read 684274 pos 12884-22101 NOT confused by 3' edge to read 52880 - best edge read 684273 len 9063 erate 0.0140 score 8936.12 - alt edge len 534 erate 0.0546 score 504.84 - absdiff 8431.27 percdiff 178.6105 tig 1631 read 684274 pos 12884-22101 NOT confused by 3' edge to read 657935 - best edge read 684273 len 9063 erate 0.0140 score 8936.12 - alt edge len 4060 erate 0.0247 score 3959.72 - absdiff 4976.40 percdiff 77.1784 tig 1631 read 684274 pos 12884-22101 NOT confused by 3' edge to read 657938 - best edge read 684273 len 9063 erate 0.0140 score 8936.12 - alt edge len 4055 erate 0.0232 score 3960.92 - absdiff 4975.19 percdiff 77.1525 tig 1631 read 684272 pos 14429-21974 NOT confused by 3' edge to read 657935 - best edge read 684274 len 7457 erate 0.0194 score 7312.33 - alt edge len 2413 erate 0.0241 score 2354.85 - absdiff 4957.49 percdiff 102.5633 tig 1631 read 684272 pos 14429-21974 NOT confused by 3' edge to read 657938 - best edge read 684274 len 7457 erate 0.0194 score 7312.33 - alt edge len 3726 erate 0.0220 score 3644.03 - absdiff 3668.31 percdiff 66.9621 saved region 3237:23047 - 2 best edges are potentially confused break tig 1631 into up to 3 pieces: 0 2737 unique (length 2737) 2737 23547 repeat (length 20810) 23547 28244 unique (length 4697) Creating Unitig 113450 Creating Unitig 113451 Creating Unitig 113452 For tig 1631 unique region 0 2737 - 0/ 1 reads repeat/unique - unitig 113450 created. For tig 1631 repeat region 2737 23547 - 157/ 0 reads repeat/unique - unitig 113451 created. For tig 1631 unique region 23547 28244 - 0/ 10 reads repeat/unique - unitig 113452 created. Annotating repeats in reads for tig 1633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1636/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 5917:5106 - contained in read 268335 0- 7019 discard region 6486:9710 - contained in read 626810 5106- 10558 discard region 19460:20744 - contained in read 379058 16242- 20744 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1638/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 15296:16609 - contained in read 71776 6175- 17178 discard region 18485:19113 - contained in read 191444 15517- 22148 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1641/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1642/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7147:9384 - closest read 40028 ( +358) 6789:13610 ( +4226) (contained) saved region 7147:9384 - closest read 420410 ( +287) 6860:9384 ( +0) (contained) saved region 7147:9384 - closest 5' read 40028 ( +358) 6789:13610 ( +4226) saved region 7147:9384 - closest 3' read 40028 ( +358) 6789:13610 ( +4226) search for confused edges: discard region 7147:9384 - no confusion in best edges Annotating repeats in reads for tig 1644/113047. Annotated with 488 overlaps. Scan reads to discard spanned repeats. discard region 12211:12787 - contained in read 171099 1148- 14935 thickest edges to the repeat regions: saved region 24710:40291 - closest 5' read 450153 ( +3477) 21233:26319 (-13972) saved region 24710:40291 - closest 3' read 498458 ( -7818) 32528:41133 ( +842) search for confused edges: discard region 24710:40291 - no confusion in best edges Annotating repeats in reads for tig 1645/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 1756:5973 - contained in read 705265 0- 9221 discard region 7338:14602 - contained in read 481989 5940- 14602 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1646/113047. Annotated with 174 overlaps. Scan reads to discard spanned repeats. discard region 4093:6853 - contained in read 268940 3067- 10737 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1649/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1397:2196 - contained in read 51650 0- 3862 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1650/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 17767:18425 - contained in read 70893 16579- 21382 thickest edges to the repeat regions: saved region 7461:9298 - closest read 290441 ( +7452) 9:9298 ( +0) (contained) saved region 7461:9298 - closest 5' read 290441 ( +7452) 9:9298 ( +0) saved region 7461:9298 - closest 3' read 290441 ( +7452) 9:9298 ( +0) saved region 24471:28609 - closest 5' read 288521 ( +3727) 20744:28419 ( -190) saved region 24471:28609 - closest 3' read 317548 ( -10) 24481:30425 ( +1816) search for confused edges: tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 37287 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3875 erate 0.0617 score 3635.91 - absdiff 65.93 percdiff 1.7970 tig 1650 read 288521 pos 20744-28419 NOT confused by 3' edge to read 218398 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 1571 erate 0.0562 score 1482.71 - absdiff 2219.13 percdiff 85.6055 tig 1650 read 288521 pos 20744-28419 NOT confused by 3' edge to read 220644 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 684 erate 0.0587 score 643.85 - absdiff 3057.99 percdiff 140.7368 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 242523 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3208 erate 0.0377 score 3087.06 - absdiff 614.78 percdiff 18.1114 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 247814 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3954 erate 0.0670 score 3689.08 - absdiff 12.76 percdiff 0.3452 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 283184 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3882 erate 0.0268 score 3777.96 - absdiff 76.12 percdiff 2.0354 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 441171 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 3077 erate 0.0575 score 2900.07 - absdiff 801.77 percdiff 24.2890 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 559828 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 2682 erate 0.0635 score 2511.69 - absdiff 1190.15 percdiff 38.3082 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 576530 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 1830 erate 0.0635 score 1713.80 - absdiff 1988.05 percdiff 73.4187 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 625687 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 1981 erate 0.0475 score 1886.90 - absdiff 1814.94 percdiff 64.9498 tig 1650 read 288521 pos 20744-28419 IS confused by 3' edge to read 656839 - best edge read 317548 len 3884 erate 0.0469 score 3701.84 - alt edge len 2652 erate 0.0540 score 2508.79 - absdiff 1193.05 percdiff 38.4195 discard region 7461:9298 - no confusion in best edges saved region 24471:28609 - 9 best edges are potentially confused break tig 1650 into up to 3 pieces: 0 23971 unique (length 23971) 23971 29109 repeat (length 5138) 29109 34650 unique (length 5541) Creating Unitig 113453 Creating Unitig 113454 Creating Unitig 113455 For tig 1650 unique region 0 23971 - 0/ 26 reads repeat/unique - unitig 113453 created. For tig 1650 repeat region 23971 29109 - 22/ 0 reads repeat/unique - unitig 113454 created. For tig 1650 unique region 29109 34650 - 0/ 2 reads repeat/unique - unitig 113455 created. Annotating repeats in reads for tig 1652/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1658/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:6851 - contained in read 35674 0- 7837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1660/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 6001:8970 - contained in read 576014 5205- 8970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1663/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 30939:32471 - contained in read 14344 23644- 37426 thickest edges to the repeat regions: saved region 15291:15873 - closest read 618176 ( +22) 15269:24598 ( +8725) (contained) saved region 15291:15873 - closest read 618175 ( +17) 15274:24600 ( +8727) (contained) saved region 15291:15873 - closest read 618177 ( +6) 15285:24605 ( +8732) (contained) saved region 15291:15873 - closest read 618178 ( +6) 15285:22996 ( +7123) (contained) saved region 15291:15873 - closest read 618174 ( +0) 15291:24605 ( +8732) (contained) saved region 15291:15873 - closest 5' read 618177 ( +6) 15285:24605 ( +8732) saved region 15291:15873 - closest 3' read 618176 ( +22) 15269:24598 ( +8725) search for confused edges: discard region 15291:15873 - no confusion in best edges Annotating repeats in reads for tig 1665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1666/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1668/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2:8555 - closest 5' read 329054 ( +2) 0:8248 ( -307) saved region 2:8555 - closest 3' read 104210 ( -3609) 3611:8890 ( +335) search for confused edges: discard region 2:8555 - no confusion in best edges Annotating repeats in reads for tig 1671/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 3863:12070 - contained in read 588140 3089- 12070 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1682/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17061:16395 - contained in read 525546 14410- 17012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1684/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 2909:8909 - contained in read 512094 0- 13788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1687/113047. Annotated with 183 overlaps. Scan reads to discard spanned repeats. discard region 14981:13854 - contained in read 388723 6308- 14690 discard region 15622:18124 - contained in read 31283 13743- 19698 thickest edges to the repeat regions: saved region 2257:13642 - closest 5' read 179582 ( +2048) 209:11568 ( -2074) saved region 2257:13642 - closest 3' read 716820 ( -3986) 6243:13642 ( +0) saved region 23447:26457 - closest 5' read 647749 ( +6529) 16918:25790 ( -667) saved region 23447:26457 - closest 3' read 629003 ( -102) 23549:28086 ( +1629) search for confused edges: tig 1687 read 11939 pos 8064-14612 IS confused by 5' edge to read 158199 - best edge read 179582 len 3417 erate 0.0366 score 3291.94 - alt edge len 3266 erate 0.0585 score 3074.94 - absdiff 217.00 percdiff 6.8165 saved region 2257:13642 - 1 best edges are potentially confused discard region 23447:26457 - no confusion in best edges break tig 1687 into up to 3 pieces: 0 1757 unique (length 1757) 1757 14142 repeat (length 12385) 14142 30978 unique (length 16836) Creating Unitig 113456 Creating Unitig 113457 Creating Unitig 113458 For tig 1687 unique region 0 1757 - 0/ 4 reads repeat/unique - unitig 113456 created. For tig 1687 repeat region 1757 14142 - 25/ 0 reads repeat/unique - unitig 113457 created. For tig 1687 unique region 14142 30978 - 0/ 32 reads repeat/unique - unitig 113458 created. Annotating repeats in reads for tig 1688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1689/113047. Annotated with 1250 overlaps. Scan reads to discard spanned repeats. discard region 7217:7798 - contained in read 307323 5578- 11814 thickest edges to the repeat regions: saved region 11815:19571 - closest 5' read 207546 ( +0) 11815:17343 ( -2228) saved region 11815:19571 - closest 3' read 214721 ( -48) 11863:19571 ( +0) search for confused edges: tig 1689 read 115379 pos 5648-12731 IS confused by 5' edge to read 581053 - best edge read 214721 len 867 erate 0.0544 score 819.84 - alt edge len 867 erate 0.0559 score 818.53 - absdiff 1.30 percdiff 0.1588 saved region 11815:19571 - 1 best edges are potentially confused break tig 1689 into up to 2 pieces: 0 11315 unique (length 11315) 11315 19571 repeat (length 8256) Creating Unitig 113459 Creating Unitig 113460 For tig 1689 unique region 0 11315 - 0/ 9 reads repeat/unique - unitig 113459 created. For tig 1689 repeat region 11315 19571 - 115/ 0 reads repeat/unique - unitig 113460 created. Annotating repeats in reads for tig 1691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1694/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:2720 - contained in read 246199 0- 5095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1695/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1696/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 22178:24683 - contained in read 337264 17671- 25860 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1701/113047. Annotated with 282 overlaps. Scan reads to discard spanned repeats. discard region 6026:9155 - contained in read 710976 2416- 9731 discard region 12632:13738 - contained in read 569873 5650- 15826 thickest edges to the repeat regions: saved region 14078:24100 - closest 5' read 657869 ( +7084) 6994:23604 ( -496) saved region 14078:24100 - closest 3' read 561349 ( -2752) 16830:24191 ( +91) search for confused edges: tig 1701 read 657869 pos 6994-23604 NOT confused by 5' edge to read 645754 - best edge read 561350 len 6698 erate 0.0128 score 6612.27 - alt edge len 805 erate 0.0525 score 762.74 - absdiff 5849.53 percdiff 158.6312 tig 1701 read 281219 pos 17795-25375 IS confused by 3' edge to read 125834 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 3488 erate 0.0370 score 3358.94 - absdiff 2096.78 percdiff 47.5748 tig 1701 read 281219 pos 17795-25375 NOT confused by 3' edge to read 406245 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 2921 erate 0.0387 score 2807.96 - absdiff 2647.77 percdiff 64.0820 tig 1701 read 281219 pos 17795-25375 IS confused by 3' edge to read 522767 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 3630 erate 0.0342 score 3505.85 - absdiff 1949.87 percdiff 43.5162 tig 1701 read 281219 pos 17795-25375 IS confused by 3' edge to read 602326 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 5478 erate 0.0577 score 5161.92 - absdiff 293.80 percdiff 5.5343 tig 1701 read 281219 pos 17795-25375 NOT confused by 3' edge to read 618714 - best edge read 561350 len 5845 erate 0.0666 score 5455.72 - alt edge len 3220 erate 0.0391 score 3094.10 - absdiff 2361.62 percdiff 55.2438 saved region 14078:24100 - 3 best edges are potentially confused break tig 1701 into up to 3 pieces: 0 13578 unique (length 13578) 13578 24600 repeat (length 11022) 24600 26908 unique (length 2308) Creating Unitig 113461 Creating Unitig 113462 Creating Unitig 113463 For tig 1701 unique region 0 13578 - 0/ 70 reads repeat/unique - unitig 113461 created. For tig 1701 repeat region 13578 24600 - 65/ 0 reads repeat/unique - unitig 113462 created. For tig 1701 unique region 24600 26908 - 0/ 2 reads repeat/unique - unitig 113463 created. Annotating repeats in reads for tig 1705/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 29415:30774 - contained in read 662913 22874- 35141 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1710/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3996:2895 - contained in read 311089 0- 7720 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1713/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 18220:19221 - contained in read 321800 13481- 22441 discard region 21849:22441 - contained in read 668232 17277- 27727 thickest edges to the repeat regions: saved region 12768:18087 - closest 5' read 105676 ( +11) 12757:17240 ( -847) saved region 12768:18087 - closest 3' read 411614 ( -157) 12925:19221 ( +1134) search for confused edges: tig 1713 read 321800 pos 13481-22441 IS confused by 3' edge to read 295329 - best edge read 73817 len 3603 erate 0.0475 score 3431.86 - alt edge len 1511 erate 0.0582 score 1423.06 - absdiff 2008.80 percdiff 82.7531 saved region 12768:18087 - 1 best edges are potentially confused break tig 1713 into up to 3 pieces: 0 12268 unique (length 12268) 12268 18587 repeat (length 6319) 18587 33705 unique (length 15118) Creating Unitig 113464 Creating Unitig 113465 Creating Unitig 113466 For tig 1713 unique region 0 12268 - 0/ 14 reads repeat/unique - unitig 113464 created. For tig 1713 repeat region 12268 18587 - 6/ 0 reads repeat/unique - unitig 113465 created. For tig 1713 unique region 18587 33705 - 0/ 15 reads repeat/unique - unitig 113466 created. Annotating repeats in reads for tig 1717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1722/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1726/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:1549 - contained in read 464727 0- 2246 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1727/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13780:14882 - contained in read 232698 10507- 16444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1731/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11098:15203 - closest 5' read 561027 ( +1713) 9385:15201 ( -2) saved region 11098:15203 - closest 3' read 627863 ( -1594) 12692:19380 ( +4177) search for confused edges: tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 342509 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2355 erate 0.0646 score 2202.87 - absdiff 70.00 percdiff 3.1279 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 435177 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2449 erate 0.0732 score 2269.73 - absdiff 3.13 percdiff 0.1379 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 672927 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2307 erate 0.0616 score 2164.89 - absdiff 107.98 percdiff 4.8663 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 688756 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2345 erate 0.0632 score 2196.80 - absdiff 76.07 percdiff 3.4038 tig 1731 read 627863 pos 12692-19380 IS confused by 5' edge to read 694629 - best edge read 561027 len 2450 erate 0.0723 score 2272.86 - alt edge len 2144 erate 0.0505 score 2035.73 - absdiff 237.14 percdiff 11.0076 saved region 11098:15203 - 5 best edges are potentially confused break tig 1731 into up to 3 pieces: 0 10598 unique (length 10598) 10598 15703 repeat (length 5105) 15703 31938 unique (length 16235) Creating Unitig 113467 Creating Unitig 113468 Creating Unitig 113469 For tig 1731 unique region 0 10598 - 0/ 20 reads repeat/unique - unitig 113467 created. For tig 1731 repeat region 10598 15703 - 5/ 0 reads repeat/unique - unitig 113468 created. For tig 1731 unique region 15703 31938 - 0/ 22 reads repeat/unique - unitig 113469 created. Annotating repeats in reads for tig 1734/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 1155:4581 - contained in read 437051 0- 8642 discard region 8050:10871 - contained in read 68611 4040- 11634 thickest edges to the repeat regions: saved region 21428:24002 - closest read 673825 ( +3941) 17487:24002 ( +0) (contained) saved region 21428:24002 - closest read 93885 ( +8) 21420:28741 ( +4739) (contained) saved region 21428:24002 - closest 5' read 93885 ( +8) 21420:28741 ( +4739) saved region 21428:24002 - closest 3' read 673825 ( +3941) 17487:24002 ( +0) search for confused edges: discard region 21428:24002 - no confusion in best edges Annotating repeats in reads for tig 1738/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14806:17213 - closest 5' read 196999 ( +8391) 6415:17019 ( -194) saved region 14806:17213 - closest 3' read 580272 ( -12) 14818:21784 ( +4571) search for confused edges: tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 52880 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 939 erate 0.0586 score 883.97 - absdiff 1135.12 percdiff 78.2015 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 167502 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 539 erate 0.0482 score 513.02 - absdiff 1506.08 percdiff 118.9579 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 167504 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 532 erate 0.0547 score 502.90 - absdiff 1516.20 percdiff 120.2379 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 309443 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 666 erate 0.0435 score 637.03 - absdiff 1382.07 percdiff 104.0665 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 633324 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 795 erate 0.0733 score 736.73 - absdiff 1282.37 percdiff 93.0663 tig 1738 read 196998 pos 6326-16981 IS confused by 3' edge to read 689567 - best edge read 580272 len 2133 erate 0.0534 score 2019.10 - alt edge len 1210 erate 0.0510 score 1148.29 - absdiff 870.81 percdiff 54.9859 saved region 14806:17213 - 6 best edges are potentially confused break tig 1738 into up to 3 pieces: 0 14306 unique (length 14306) 14306 17713 repeat (length 3407) 17713 24893 unique (length 7180) Creating Unitig 113470 Creating Unitig 113471 Creating Unitig 113472 For tig 1738 unique region 0 14306 - 0/ 14 reads repeat/unique - unitig 113470 created. For tig 1738 repeat region 14306 17713 - 19/ 0 reads repeat/unique - unitig 113472 created. For tig 1738 unique region 17713 24893 - 0/ 11 reads repeat/unique - unitig 113471 created. Annotating repeats in reads for tig 1740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1741/113047. Annotated with 156 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9253:14150 - closest read 444381 ( +400) 8853:19078 ( +4928) (contained) saved region 9253:14150 - closest read 444382 ( +361) 8892:19082 ( +4932) (contained) saved region 9253:14150 - closest read 547160 ( +301) 8952:14150 ( +0) (contained) saved region 9253:14150 - closest 5' read 444382 ( +361) 8892:19082 ( +4932) saved region 9253:14150 - closest 3' read 444381 ( +400) 8853:19078 ( +4928) saved region 18490:27497 - closest 5' read 444382 ( +9598) 8892:19082 ( -8415) saved region 18490:27497 - closest 3' read 155180 ( -1118) 19608:27572 ( +75) search for confused edges: tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 21075 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3056 erate 0.0566 score 2883.03 - absdiff 2994.61 percdiff 68.3649 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 21077 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3019 erate 0.0520 score 2862.01 - absdiff 3015.63 percdiff 69.0103 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 125715 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 971 erate 0.0510 score 921.48 - absdiff 4956.17 percdiff 145.7884 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 426783 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 914 erate 0.0564 score 862.45 - absdiff 5015.19 percdiff 148.8167 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 719224 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3183 erate 0.0324 score 3079.87 - absdiff 2797.77 percdiff 62.4676 tig 1741 read 417535 pos 19034-25908 NOT confused by 3' edge to read 719225 - best edge read 155180 len 6225 erate 0.0558 score 5877.65 - alt edge len 3191 erate 0.0346 score 3080.59 - absdiff 2797.05 percdiff 62.4465 discard region 9253:14150 - no confusion in best edges discard region 18490:27497 - no confusion in best edges Annotating repeats in reads for tig 1742/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 11310:13341 - contained in read 372048 8254- 14475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1745/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4225:4897 - contained in read 602429 94- 6729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1747/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1754/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1757/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 12395:13752 - contained in read 128688 10985- 14885 discard region 16477:20386 - contained in read 344836 11857- 23519 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1777/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 322:951 - contained in read 514107 0- 2707 discard region 29033:34751 - contained in read 517853 27136- 35257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1785/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1008:5573 - contained in read 534912 0- 6225 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1800/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4383:5501 - closest 5' read 506953 ( +4383) 0:5336 ( -165) saved region 4383:5501 - closest 3' read 260365 ( -2) 4385:11068 ( +5567) search for confused edges: tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 140335 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 622 erate 0.0391 score 597.68 - absdiff 98.06 percdiff 15.1632 tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 192472 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 666 erate 0.0319 score 644.75 - absdiff 50.99 percdiff 7.6072 tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 192473 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 670 erate 0.0424 score 641.59 - absdiff 54.15 percdiff 8.0982 tig 1800 read 482947 pos 4633-13949 IS confused by 5' edge to read 192476 - best edge read 506953 len 718 erate 0.0310 score 695.74 - alt edge len 671 erate 0.0332 score 648.72 - absdiff 47.02 percdiff 6.9945 saved region 4383:5501 - 4 best edges are potentially confused break tig 1800 into up to 3 pieces: 0 3883 unique (length 3883) 3883 6001 repeat (length 2118) 6001 30587 unique (length 24586) Creating Unitig 113473 Creating Unitig 113474 For tig 1800 unique region 0 3883 - 0/ 1 reads repeat/unique - unitig 113473 created. For tig 1800 repeat region 3883 6001 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1800 unique region 6001 30587 - 0/ 34 reads repeat/unique - unitig 113474 created. Annotating repeats in reads for tig 1803/113047. Annotated with 95 overlaps. Scan reads to discard spanned repeats. discard region 0:3224 - contained in read 654101 0- 5242 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1809/113047. Annotated with 802 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:18177 - closest 5' read 246097 ( +0) 0:4645 (-13532) saved region 0:18177 - closest 3' read 296250 ( -8183) 8183:18177 ( +0) search for confused edges: tig 1809 read 642904 pos 117-9971 NOT confused by 5' edge to read 48618 - best edge read 480132 len 6867 erate 0.0482 score 6536.01 - alt edge len 2852 erate 0.0543 score 2697.14 - absdiff 3838.87 percdiff 83.1542 tig 1809 read 642904 pos 117-9971 NOT confused by 5' edge to read 58734 - best edge read 480132 len 6867 erate 0.0482 score 6536.01 - alt edge len 4291 erate 0.0493 score 4079.45 - absdiff 2456.56 percdiff 46.2826 tig 1809 read 642904 pos 117-9971 IS confused by 5' edge to read 513091 - best edge read 480132 len 6867 erate 0.0482 score 6536.01 - alt edge len 6737 erate 0.0680 score 6278.88 - absdiff 257.13 percdiff 4.0129 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 48618 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 2428 erate 0.0634 score 2274.06 - absdiff 4326.15 percdiff 97.4986 tig 1809 read 480132 pos 2207-11154 NOT confused by 5' edge to read 201691 - best edge read 642904 len 6925 erate 0.0353 score 6680.55 - alt edge len 723 erate 0.0516 score 685.69 - absdiff 5994.85 percdiff 162.7656 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 432009 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 1417 erate 0.0717 score 1315.40 - absdiff 5284.81 percdiff 133.5288 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 432010 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 809 erate 0.0724 score 750.43 - absdiff 5849.79 percdiff 159.1639 tig 1809 read 480132 pos 2207-11154 NOT confused by 3' edge to read 462656 - best edge read 496271 len 6933 erate 0.0480 score 6600.22 - alt edge len 2469 erate 0.0430 score 2362.83 - absdiff 4237.38 percdiff 94.5523 tig 1809 read 480132 pos 2207-11154 NOT confused by 5' edge to read 611584 - best edge read 642904 len 6925 erate 0.0353 score 6680.55 - alt edge len 1763 erate 0.0303 score 1709.58 - absdiff 4970.97 percdiff 118.4956 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 130592 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2765 erate 0.0535 score 2617.07 - absdiff 2694.14 percdiff 67.9628 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 308216 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2622 erate 0.0580 score 2469.92 - absdiff 2841.29 percdiff 73.0302 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 408694 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2631 erate 0.0635 score 2463.93 - absdiff 2847.28 percdiff 73.2407 tig 1809 read 560477 pos 6358-17232 IS confused by 5' edge to read 515186 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 3734 erate 0.0469 score 3558.88 - absdiff 1752.34 percdiff 39.5112 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 585139 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 3020 erate 0.0554 score 2852.69 - absdiff 2458.52 percdiff 60.2291 tig 1809 read 560477 pos 6358-17232 NOT confused by 5' edge to read 611584 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 2854 erate 0.0610 score 2679.91 - absdiff 2631.31 percdiff 65.8558 tig 1809 read 560477 pos 6358-17232 IS confused by 5' edge to read 633370 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 5257 erate 0.0554 score 4965.76 - absdiff 345.45 percdiff 6.7229 tig 1809 read 560477 pos 6358-17232 IS confused by 5' edge to read 701901 - best edge read 496271 len 5517 erate 0.0373 score 5311.22 - alt edge len 3702 erate 0.0573 score 3489.88 - absdiff 1821.34 percdiff 41.3890 saved region 0:18177 - 4 best edges are potentially confused Annotating repeats in reads for tig 1810/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 18004:21955 - contained in read 567193 15592- 21955 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1816/113047. Annotated with 388 overlaps. Scan reads to discard spanned repeats. discard region 28418:27195 - contained in read 696142 21778- 28418 thickest edges to the repeat regions: saved region 20778:26548 - closest read 69592 ( +188) 20590:26548 ( +0) (contained) saved region 20778:26548 - closest 5' read 69592 ( +188) 20590:26548 ( +0) saved region 20778:26548 - closest 3' read 69592 ( +188) 20590:26548 ( +0) saved region 30261:38793 - closest 5' read 43132 ( +2343) 27918:34961 ( -3832) saved region 30261:38793 - closest 3' read 482098 ( -575) 30836:38793 ( +0) search for confused edges: tig 1816 read 565743 pos 27067-34743 IS confused by 3' edge to read 63667 - best edge read 482098 len 3843 erate 0.0494 score 3653.16 - alt edge len 2118 erate 0.0535 score 2004.69 - absdiff 1648.47 percdiff 58.2720 discard region 20778:26548 - no confusion in best edges saved region 30261:38793 - 1 best edges are potentially confused break tig 1816 into up to 3 pieces: 0 29761 unique (length 29761) 29761 39293 repeat (length 9532) 39293 39460 unique (length 167) Creating Unitig 113475 Creating Unitig 113476 Creating Unitig 113477 For tig 1816 unique region 0 29761 - 0/ 71 reads repeat/unique - unitig 113475 created. For tig 1816 repeat region 29761 39293 - 26/ 0 reads repeat/unique - unitig 113476 created. For tig 1816 unique region 39293 39460 - 0/ 1 reads repeat/unique - unitig 113477 created. Annotating repeats in reads for tig 1817/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1824/113047. Annotated with 331 overlaps. Scan reads to discard spanned repeats. discard region 0:8823 - contained in read 545480 0- 9604 discard region 9936:10979 - contained in read 116762 4298- 12309 thickest edges to the repeat regions: saved region 11168:20621 - closest 5' read 393010 ( +1079) 10089:20492 ( -129) saved region 11168:20621 - closest 3' read 202664 ( -5044) 16212:20621 ( +0) search for confused edges: tig 1824 read 577504 pos 18236-21473 IS confused by 5' edge to read 533340 - best edge read 393010 len 2232 erate 0.0305 score 2163.92 - alt edge len 1516 erate 0.0323 score 1467.03 - absdiff 696.89 percdiff 38.3861 tig 1824 read 577504 pos 18236-21473 IS confused by 5' edge to read 620091 - best edge read 393010 len 2232 erate 0.0305 score 2163.92 - alt edge len 1676 erate 0.0328 score 1621.03 - absdiff 542.90 percdiff 28.6871 saved region 11168:20621 - 2 best edges are potentially confused break tig 1824 into up to 3 pieces: 0 10668 unique (length 10668) 10668 21121 repeat (length 10453) 21121 21473 unique (length 352) Creating Unitig 113478 Creating Unitig 113479 Creating Unitig 113480 For tig 1824 unique region 0 10668 - 0/ 39 reads repeat/unique - unitig 113478 created. For tig 1824 repeat region 10668 21121 - 45/ 0 reads repeat/unique - unitig 113479 created. For tig 1824 unique region 21121 21473 - 0/ 1 reads repeat/unique - unitig 113480 created. Annotating repeats in reads for tig 1825/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 21626:22275 - contained in read 441738 15995- 22931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1826/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8614:20020 - closest 5' read 188519 ( +1138) 7476:15523 ( -4497) saved region 8614:20020 - closest 3' read 633370 ( -2712) 11326:22353 ( +2333) search for confused edges: tig 1826 read 487994 pos 8621-19869 NOT confused by 5' edge to read 48618 - best edge read 633370 len 8538 erate 0.0226 score 8345.04 - alt edge len 1440 erate 0.0587 score 1355.47 - absdiff 6989.57 percdiff 144.1072 tig 1826 read 487994 pos 8621-19869 NOT confused by 5' edge to read 432009 - best edge read 633370 len 8538 erate 0.0226 score 8345.04 - alt edge len 564 erate 0.0623 score 528.86 - absdiff 7816.18 percdiff 176.1610 tig 1826 read 487994 pos 8621-19869 NOT confused by 5' edge to read 432010 - best edge read 633370 len 8538 erate 0.0226 score 8345.04 - alt edge len 570 erate 0.0616 score 534.89 - absdiff 7810.15 percdiff 175.9058 tig 1826 read 633370 pos 11326-22353 NOT confused by 3' edge to read 487992 - best edge read 487994 len 8508 erate 0.0226 score 8315.72 - alt edge len 1123 erate 0.0160 score 1105.03 - absdiff 7210.69 percdiff 153.0809 tig 1826 read 633370 pos 11326-22353 IS confused by 3' edge to read 487993 - best edge read 487994 len 8508 erate 0.0226 score 8315.72 - alt edge len 8324 erate 0.0277 score 8093.43 - absdiff 222.29 percdiff 2.7094 saved region 8614:20020 - 1 best edges are potentially confused break tig 1826 into up to 3 pieces: 0 8114 unique (length 8114) 8114 20520 repeat (length 12406) 20520 22353 unique (length 1833) Creating Unitig 113481 Creating Unitig 113482 Creating Unitig 113483 For tig 1826 unique region 0 8114 - 0/ 18 reads repeat/unique - unitig 113481 created. For tig 1826 repeat region 8114 20520 - 13/ 0 reads repeat/unique - unitig 113482 created. For tig 1826 unique region 20520 22353 - 0/ 1 reads repeat/unique - unitig 113483 created. Annotating repeats in reads for tig 1828/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9791:10785 - closest read 251545 ( +7028) 2763:10980 ( +195) (contained) saved region 9791:10785 - closest read 698182 ( +4012) 5779:10971 ( +186) (contained) saved region 9791:10785 - closest read 251546 ( +1215) 8576:10785 ( +0) (contained) saved region 9791:10785 - closest 5' read 251545 ( +7028) 2763:10980 ( +195) saved region 9791:10785 - closest 3' read 251545 ( +7028) 2763:10980 ( +195) search for confused edges: discard region 9791:10785 - no confusion in best edges Annotating repeats in reads for tig 1837/113047. Annotated with 159 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9180 - closest 5' read 590994 ( +0) 0:6458 ( -2722) saved region 0:9180 - closest 3' read 66891 ( -1599) 1599:9180 ( +0) search for confused edges: tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 52738 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1823 erate 0.0708 score 1693.93 - absdiff 4539.67 percdiff 114.5292 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 113252 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1715 erate 0.0671 score 1599.92 - absdiff 4633.68 percdiff 118.3038 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 140414 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 806 erate 0.0596 score 757.96 - absdiff 5475.64 percdiff 156.6356 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 140415 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 805 erate 0.0560 score 759.92 - absdiff 5473.68 percdiff 156.5358 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 350785 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1775 erate 0.0626 score 1663.88 - absdiff 4569.71 percdiff 115.7258 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 574860 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1135 erate 0.0503 score 1077.91 - absdiff 5155.69 percdiff 141.0294 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 606199 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 4086 erate 0.0722 score 3790.99 - absdiff 2442.61 percdiff 48.7323 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 638612 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1725 erate 0.0580 score 1624.95 - absdiff 4608.65 percdiff 117.2901 tig 1837 read 590994 pos 0-6458 NOT confused by 3' edge to read 638614 - best edge read 590995 len 6400 erate 0.0260 score 6233.60 - alt edge len 1776 erate 0.0653 score 1660.03 - absdiff 4573.57 percdiff 115.8801 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 21508 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 808 erate 0.0644 score 755.96 - absdiff 3914.64 percdiff 144.2767 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 52738 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1829 erate 0.0602 score 1718.89 - absdiff 2951.71 percdiff 92.3925 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 66611 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1779 erate 0.0652 score 1663.01 - absdiff 3007.59 percdiff 94.9724 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 113252 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1716 erate 0.0607 score 1611.84 - absdiff 3058.76 percdiff 97.3750 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 140414 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 803 erate 0.0523 score 761.00 - absdiff 3909.60 percdiff 143.9574 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 140415 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 802 erate 0.0486 score 763.02 - absdiff 3907.58 percdiff 143.8295 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 230529 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1088 erate 0.0708 score 1010.97 - absdiff 3659.63 percdiff 128.8246 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 350785 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1776 erate 0.0557 score 1677.08 - absdiff 2993.52 percdiff 94.3187 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 398969 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 661 erate 0.0742 score 611.95 - absdiff 4058.65 percdiff 153.6623 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 574860 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1130 erate 0.0451 score 1079.04 - absdiff 3591.56 percdiff 124.9318 tig 1837 read 590995 pos 11-6462 IS confused by 5' edge to read 606199 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 4113 erate 0.0565 score 3880.62 - absdiff 789.98 percdiff 18.4765 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 638612 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1724 erate 0.0484 score 1640.56 - absdiff 3030.04 percdiff 96.0217 tig 1837 read 590995 pos 11-6462 NOT confused by 5' edge to read 638614 - best edge read 66891 len 4825 erate 0.0320 score 4670.60 - alt edge len 1775 erate 0.0567 score 1674.36 - absdiff 2996.24 percdiff 94.4448 tig 1837 read 66891 pos 1599-9180 NOT confused by 5' edge to read 93171 - best edge read 590995 len 4831 erate 0.0320 score 4676.41 - alt edge len 546 erate 0.0568 score 514.99 - absdiff 4161.42 percdiff 160.3199 tig 1837 read 66891 pos 1599-9180 NOT confused by 5' edge to read 161947 - best edge read 590995 len 4831 erate 0.0320 score 4676.41 - alt edge len 546 erate 0.0495 score 518.97 - absdiff 4157.43 percdiff 160.0435 saved region 0:9180 - 1 best edges are potentially confused Annotating repeats in reads for tig 1845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1851/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 31178:34701 - contained in read 312686 26617- 34701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1853/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 678:0 - contained in read 342618 0- 5995 thickest edges to the repeat regions: saved region 9032:10922 - closest read 643073 ( +0) 9032:16072 ( +5150) (contained) saved region 9032:10922 - closest 5' read 643073 ( +0) 9032:16072 ( +5150) saved region 9032:10922 - closest 3' read 643073 ( +0) 9032:16072 ( +5150) search for confused edges: discard region 9032:10922 - no confusion in best edges Annotating repeats in reads for tig 1865/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1890/113047. Annotated with 160 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1384:10875 - closest 5' read 171826 ( +358) 1026:9283 ( -1592) saved region 1384:10875 - closest 3' read 667648 ( -838) 2222:11278 ( +403) search for confused edges: tig 1890 read 317555 pos 1384-7772 NOT confused by 5' edge to read 92301 - best edge read 171826 len 5167 erate 0.0240 score 5042.99 - alt edge len 751 erate 0.0406 score 720.51 - absdiff 4322.48 percdiff 149.9950 tig 1890 read 317555 pos 1384-7772 NOT confused by 5' edge to read 695590 - best edge read 171826 len 5167 erate 0.0240 score 5042.99 - alt edge len 837 erate 0.0400 score 803.52 - absdiff 4239.47 percdiff 145.0257 tig 1890 read 579461 pos 1971-9270 NOT confused by 5' edge to read 596662 - best edge read 171825 len 6674 erate 0.0161 score 6566.55 - alt edge len 612 erate 0.0547 score 578.52 - absdiff 5988.02 percdiff 167.6127 tig 1890 read 579461 pos 1971-9270 NOT confused by 5' edge to read 633141 - best edge read 171825 len 6674 erate 0.0161 score 6566.55 - alt edge len 783 erate 0.0336 score 756.69 - absdiff 5809.86 percdiff 158.6690 tig 1890 read 667648 pos 2222-11278 NOT confused by 5' edge to read 382743 - best edge read 579461 len 6963 erate 0.0137 score 6867.61 - alt edge len 570 erate 0.0421 score 546.00 - absdiff 6321.60 percdiff 170.5405 tig 1890 read 667648 pos 2222-11278 NOT confused by 5' edge to read 633141 - best edge read 579461 len 6963 erate 0.0137 score 6867.61 - alt edge len 529 erate 0.0171 score 519.95 - absdiff 6347.65 percdiff 171.8470 discard region 1384:10875 - no confusion in best edges Annotating repeats in reads for tig 1891/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11141:15700 - contained in read 265684 3444- 16339 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1894/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3332:7446 - contained in read 669613 121- 7446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1895/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 22075:23428 - closest 5' read 305959 ( +5044) 17031:22794 ( -634) saved region 22075:23428 - closest 3' read 245018 ( -28) 22103:27978 ( +4550) search for confused edges: tig 1895 read 305965 pos 19246-22794 IS confused by 5' edge to read 176889 - best edge read 245018 len 690 erate 0.0687 score 642.60 - alt edge len 676 erate 0.0569 score 637.54 - absdiff 5.06 percdiff 0.7908 saved region 22075:23428 - 1 best edges are potentially confused break tig 1895 into up to 3 pieces: 0 21575 unique (length 21575) 21575 23928 repeat (length 2353) 23928 27978 unique (length 4050) Creating Unitig 113484 Creating Unitig 113485 For tig 1895 unique region 0 21575 - 0/ 43 reads repeat/unique - unitig 113484 created. For tig 1895 repeat region 21575 23928 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1895 unique region 23928 27978 - 0/ 2 reads repeat/unique - unitig 113485 created. Annotating repeats in reads for tig 1902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1910/113047. Annotated with 112 overlaps. Scan reads to discard spanned repeats. discard region 5275:6365 - contained in read 456080 3379- 9839 thickest edges to the repeat regions: saved region 9413:14954 - closest 5' read 243936 ( +0) 9413:14105 ( -849) saved region 9413:14954 - closest 3' read 119385 ( -1429) 10842:18042 ( +3088) search for confused edges: tig 1910 read 98116 pos 5286-12293 IS confused by 3' edge to read 158321 - best edge read 119385 len 1433 erate 0.0587 score 1348.88 - alt edge len 630 erate 0.0510 score 597.87 - absdiff 751.01 percdiff 77.1554 saved region 9413:14954 - 1 best edges are potentially confused break tig 1910 into up to 3 pieces: 0 8913 unique (length 8913) 8913 15454 repeat (length 6541) 15454 23737 unique (length 8283) Creating Unitig 113486 Creating Unitig 113487 Creating Unitig 113488 For tig 1910 unique region 0 8913 - 0/ 13 reads repeat/unique - unitig 113486 created. For tig 1910 repeat region 8913 15454 - 9/ 0 reads repeat/unique - unitig 113487 created. For tig 1910 unique region 15454 23737 - 0/ 10 reads repeat/unique - unitig 113488 created. Annotating repeats in reads for tig 1914/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 0:2467 - contained in read 431510 0- 9906 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1922/113047. Annotated with 585 overlaps. Scan reads to discard spanned repeats. discard region 8367:12676 - contained in read 40951 5141- 12676 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1924/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 364:5023 - closest 5' read 678396 ( +0) 364:5018 ( -5) saved region 364:5023 - closest 3' read 270742 ( -534) 898:5023 ( +0) search for confused edges: tig 1924 read 711937 pos 1-5017 IS confused by 3' edge to read 614218 - best edge read 317409 len 4460 erate 0.0698 score 4148.69 - alt edge len 3538 erate 0.0391 score 3399.66 - absdiff 749.03 percdiff 19.8461 tig 1924 read 711937 pos 1-5017 NOT confused by 3' edge to read 627042 - best edge read 317409 len 4460 erate 0.0698 score 4148.69 - alt edge len 1178 erate 0.0494 score 1119.81 - absdiff 3028.89 percdiff 114.9810 saved region 364:5023 - 1 best edges are potentially confused Annotating repeats in reads for tig 1925/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 2008:1294 - contained in read 137120 0- 8135 discard region 3571:3026 - contained in read 137120 0- 8135 discard region 7499:8135 - contained in read 711571 1555- 11865 discard region 12789:13553 - contained in read 37095 6532- 18421 thickest edges to the repeat regions: saved region 15091:20407 - closest read 522711 ( +2016) 13075:20407 ( +0) (contained) saved region 15091:20407 - closest 5' read 522711 ( +2016) 13075:20407 ( +0) saved region 15091:20407 - closest 3' read 522711 ( +2016) 13075:20407 ( +0) search for confused edges: discard region 15091:20407 - no confusion in best edges Annotating repeats in reads for tig 1932/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14049:21376 - closest 5' read 615400 ( +6845) 7204:21264 ( -112) saved region 14049:21376 - closest 3' read 694969 ( -4686) 18735:21376 ( +0) search for confused edges: tig 1932 read 313641 pos 19390-30054 IS confused by 3' edge to read 661943 - best edge read 615400 len 1864 erate 0.0419 score 1785.90 - alt edge len 1857 erate 0.0700 score 1727.01 - absdiff 58.89 percdiff 3.3527 tig 1932 read 313641 pos 19390-30054 IS confused by 3' edge to read 695881 - best edge read 615400 len 1864 erate 0.0419 score 1785.90 - alt edge len 1864 erate 0.0585 score 1754.96 - absdiff 30.94 percdiff 1.7477 saved region 14049:21376 - 2 best edges are potentially confused break tig 1932 into up to 3 pieces: 0 13549 unique (length 13549) 13549 21876 repeat (length 8327) 21876 41090 unique (length 19214) Creating Unitig 113489 Creating Unitig 113490 Creating Unitig 113491 For tig 1932 unique region 0 13549 - 0/ 20 reads repeat/unique - unitig 113489 created. For tig 1932 repeat region 13549 21876 - 25/ 0 reads repeat/unique - unitig 113490 created. For tig 1932 unique region 21876 41090 - 0/ 11 reads repeat/unique - unitig 113491 created. Annotating repeats in reads for tig 1933/113047. Annotated with 783 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1069:6622 - closest 5' read 666533 ( +1069) 0:6234 ( -388) saved region 1069:6622 - closest 3' read 138839 ( -3501) 4570:18465 (+11843) saved region 23308:30047 - closest 5' read 464069 ( +3323) 19985:27248 ( -2799) saved region 23308:30047 - closest 3' read 703590 ( -591) 23899:36139 ( +6092) search for confused edges: tig 1933 read 138840 pos 4574-16320 IS confused by 5' edge to read 531475 - best edge read 666533 len 1673 erate 0.0251 score 1631.01 - alt edge len 920 erate 0.0275 score 894.70 - absdiff 736.31 percdiff 58.3051 saved region 1069:6622 - 1 best edges are potentially confused discard region 23308:30047 - no confusion in best edges break tig 1933 into up to 3 pieces: 0 569 unique (length 569) 569 7122 repeat (length 6553) 7122 38477 unique (length 31355) Creating Unitig 113492 Creating Unitig 113493 For tig 1933 unique region 0 569 - 0/ 1 reads repeat/unique - unitig 113492 created. For tig 1933 repeat region 569 7122 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1933 unique region 7122 38477 - 0/ 46 reads repeat/unique - unitig 113493 created. Annotating repeats in reads for tig 1936/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 22604:24406 - contained in read 700780 15722- 29449 thickest edges to the repeat regions: saved region 8823:11391 - closest 5' read 389244 ( +4955) 3868:11290 ( -101) saved region 8823:11391 - closest 3' read 207306 ( -114) 8937:12510 ( +1119) search for confused edges: discard region 8823:11391 - no confusion in best edges Annotating repeats in reads for tig 1938/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:6301 - contained in read 397413 0- 6896 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1940/113047. Annotated with 244 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2585:18427 - closest 5' read 17909 ( +2585) 0:7997 (-10430) saved region 2585:18427 - closest 3' read 570308 ( -4279) 6864:18532 ( +105) search for confused edges: tig 1940 read 17909 pos 0-7997 IS confused by 3' edge to read 50211 - best edge read 385524 len 3915 erate 0.0415 score 3752.53 - alt edge len 1823 erate 0.0549 score 1722.92 - absdiff 2029.61 percdiff 74.1350 tig 1940 read 385524 pos 3983-10782 IS confused by 5' edge to read 50211 - best edge read 385523 len 6732 erate 0.0359 score 6490.32 - alt edge len 4645 erate 0.0440 score 4440.62 - absdiff 2049.70 percdiff 37.5027 tig 1940 read 385523 pos 4072-10909 IS confused by 3' edge to read 50211 - best edge read 188831 len 6717 erate 0.0225 score 6565.87 - alt edge len 4653 erate 0.0355 score 4487.82 - absdiff 2078.05 percdiff 37.5992 tig 1940 read 476740 pos 4488-14413 NOT confused by 5' edge to read 652572 - best edge read 188830 len 8735 erate 0.0373 score 8409.18 - alt edge len 881 erate 0.0377 score 847.79 - absdiff 7561.40 percdiff 163.3666 saved region 2585:18427 - 3 best edges are potentially confused break tig 1940 into up to 3 pieces: 0 2085 unique (length 2085) 2085 18927 repeat (length 16842) 18927 19854 unique (length 927) Creating Unitig 113494 Creating Unitig 113495 Creating Unitig 113496 For tig 1940 unique region 0 2085 - 0/ 1 reads repeat/unique - unitig 113494 created. For tig 1940 repeat region 2085 18927 - 95/ 0 reads repeat/unique - unitig 113495 created. For tig 1940 unique region 18927 19854 - 0/ 2 reads repeat/unique - unitig 113496 created. Annotating repeats in reads for tig 1941/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 4082:7295 - contained in read 418001 3182- 10158 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1944/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 1625:5145 - contained in read 301327 1097- 8809 thickest edges to the repeat regions: saved region 13274:14663 - closest 5' read 677698 ( +5128) 8146:14593 ( -70) saved region 13274:14663 - closest 3' read 170838 ( -601) 13875:19741 ( +5078) search for confused edges: discard region 13274:14663 - no confusion in best edges Annotating repeats in reads for tig 1945/113047. Annotated with 239 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11930:17293 - closest read 247196 ( +195) 11735:17293 ( +0) (contained) saved region 11930:17293 - closest 5' read 247196 ( +195) 11735:17293 ( +0) saved region 11930:17293 - closest 3' read 247196 ( +195) 11735:17293 ( +0) search for confused edges: discard region 11930:17293 - no confusion in best edges Annotating repeats in reads for tig 1947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1950/113047. Annotated with 151 overlaps. Scan reads to discard spanned repeats. discard region 26991:29072 - contained in read 26346 26474- 29440 thickest edges to the repeat regions: saved region 4509:7970 - closest 5' read 552923 ( +4509) 0:7962 ( -8) saved region 4509:7970 - closest 3' read 360189 ( -221) 4730:9270 ( +1300) search for confused edges: tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 75217 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 3197 erate 0.0432 score 3058.89 - absdiff 36.24 percdiff 1.1777 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 75218 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 3182 erate 0.0241 score 3105.31 - absdiff 10.19 percdiff 0.3285 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 247588 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 3196 erate 0.0235 score 3120.89 - absdiff 25.77 percdiff 0.8290 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 338946 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 3149 erate 0.0521 score 2984.94 - absdiff 110.19 percdiff 3.6247 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 389140 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 2286 erate 0.0340 score 2208.28 - absdiff 886.85 percdiff 33.4446 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 389141 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 2236 erate 0.0505 score 2123.08 - absdiff 972.05 percdiff 37.2559 tig 1950 read 552923 pos 0-7962 NOT confused by 3' edge to read 533781 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 521 erate 0.0465 score 496.77 - absdiff 2598.36 percdiff 144.6785 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 534859 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 2283 erate 0.0395 score 2192.82 - absdiff 902.31 percdiff 34.1269 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 572835 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 2056 erate 0.0597 score 1933.26 - absdiff 1161.87 percdiff 46.2125 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 576001 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 1731 erate 0.0462 score 1651.03 - absdiff 1444.10 percdiff 60.8535 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 638578 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 1723 erate 0.0499 score 1637.02 - absdiff 1458.11 percdiff 61.6255 tig 1950 read 552923 pos 0-7962 IS confused by 3' edge to read 653382 - best edge read 338765 len 3345 erate 0.0747 score 3095.13 - alt edge len 3197 erate 0.0256 score 3115.16 - absdiff 20.03 percdiff 0.6450 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 35442 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 2431 erate 0.0321 score 2352.96 - absdiff 596.70 percdiff 22.5056 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 117158 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 1395 erate 0.0722 score 1294.28 - absdiff 1655.38 percdiff 78.0114 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 161084 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 1796 erate 0.0569 score 1693.81 - absdiff 1255.85 percdiff 54.0911 tig 1950 read 360189 pos 4730-9270 NOT confused by 3' edge to read 280115 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 590 erate 0.0441 score 563.98 - absdiff 2385.68 percdiff 135.7953 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 411188 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 2629 erate 0.0472 score 2504.91 - absdiff 444.75 percdiff 16.3074 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 501924 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 3147 erate 0.0445 score 3006.96 - absdiff 57.30 percdiff 1.9239 tig 1950 read 360189 pos 4730-9270 NOT confused by 3' edge to read 556919 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 580 erate 0.0431 score 555.00 - absdiff 2394.66 percdiff 136.6556 tig 1950 read 360189 pos 4730-9270 NOT confused by 3' edge to read 556922 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 587 erate 0.0375 score 564.99 - absdiff 2384.67 percdiff 135.6991 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 569813 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 3146 erate 0.0561 score 2969.51 - absdiff 19.85 percdiff 0.6707 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 605427 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 1806 erate 0.0743 score 1671.81 - absdiff 1277.85 percdiff 55.3004 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 605430 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 1855 erate 0.0626 score 1738.88 - absdiff 1210.78 percdiff 51.6486 tig 1950 read 360189 pos 4730-9270 IS confused by 3' edge to read 641632 - best edge read 338765 len 3150 erate 0.0636 score 2949.66 - alt edge len 3157 erate 0.0510 score 2995.99 - absdiff 46.33 percdiff 1.5586 saved region 4509:7970 - 20 best edges are potentially confused break tig 1950 into up to 3 pieces: 0 4009 unique (length 4009) 4009 8470 repeat (length 4461) 8470 29440 unique (length 20970) Creating Unitig 113497 Creating Unitig 113498 Creating Unitig 113499 For tig 1950 unique region 0 4009 - 0/ 2 reads repeat/unique - unitig 113497 created. For tig 1950 repeat region 4009 8470 - 14/ 0 reads repeat/unique - unitig 113498 created. For tig 1950 unique region 8470 29440 - 0/ 26 reads repeat/unique - unitig 113499 created. Annotating repeats in reads for tig 1951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1954/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5335:4412 - contained in read 17874 0- 6262 discard region 5593:10794 - contained in read 645593 4765- 12722 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1959/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11162:11735 - contained in read 371362 3110- 15324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1963/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 261:2196 - contained in read 36824 0- 6747 thickest edges to the repeat regions: saved region 5370:8057 - closest read 108065 ( +0) 5370:11607 ( +3550) (contained) saved region 5370:8057 - closest 5' read 108065 ( +0) 5370:11607 ( +3550) saved region 5370:8057 - closest 3' read 108065 ( +0) 5370:11607 ( +3550) search for confused edges: discard region 5370:8057 - no confusion in best edges Annotating repeats in reads for tig 1964/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7606:8218 - contained in read 607600 5921- 16977 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1965/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1971/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1972/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 7251:8070 - contained in read 50593 0- 8884 thickest edges to the repeat regions: saved region 19370:22913 - closest read 459520 ( +3809) 15561:23233 ( +320) (contained) saved region 19370:22913 - closest 5' read 459520 ( +3809) 15561:23233 ( +320) saved region 19370:22913 - closest 3' read 459520 ( +3809) 15561:23233 ( +320) search for confused edges: discard region 19370:22913 - no confusion in best edges Annotating repeats in reads for tig 1976/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1977/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1979/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 15169:17276 - contained in read 62563 11288- 17475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1982/113047. Annotated with 277 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2958:10858 - closest 5' read 491946 ( +834) 2124:7271 ( -3587) saved region 2958:10858 - closest 3' read 220121 ( -3656) 6614:10858 ( +0) search for confused edges: discard region 2958:10858 - no confusion in best edges Annotating repeats in reads for tig 1983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1985/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 5446:6234 - contained in read 73092 0- 7425 discard region 10467:11049 - contained in read 186009 5304- 11705 discard region 11186:11967 - contained in read 36129 8707- 16171 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1987/113047. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 0:2368 - contained in read 73397 0- 6751 thickest edges to the repeat regions: saved region 4964:8804 - closest read 16155 ( +0) 4964:11239 ( +2435) (contained) saved region 4964:8804 - closest 5' read 16155 ( +0) 4964:11239 ( +2435) saved region 4964:8804 - closest 3' read 16155 ( +0) 4964:11239 ( +2435) search for confused edges: tig 1987 read 73397 pos 0-6751 IS confused by 3' edge to read 66229 - best edge read 16157 len 1760 erate 0.0692 score 1638.21 - alt edge len 1347 erate 0.0626 score 1262.68 - absdiff 375.53 percdiff 25.8907 saved region 4964:8804 - 1 best edges are potentially confused break tig 1987 into up to 3 pieces: 0 4464 unique (length 4464) 4464 9304 repeat (length 4840) 9304 11242 unique (length 1938) Creating Unitig 113500 Creating Unitig 113501 Creating Unitig 113502 For tig 1987 unique region 0 4464 - 0/ 4 reads repeat/unique - unitig 113500 created. For tig 1987 repeat region 4464 9304 - 7/ 0 reads repeat/unique - unitig 113502 created. For tig 1987 unique region 9304 11242 - 0/ 8 reads repeat/unique - unitig 113501 created. Annotating repeats in reads for tig 1990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1993/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 11094:13134 - contained in read 240770 7034- 14861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1994/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 22295:27553 - contained in read 561870 17986- 28940 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1995/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 22919:24525 - contained in read 527013 16002- 29062 thickest edges to the repeat regions: saved region 14877:20643 - closest 5' read 685965 ( +24) 14853:17688 ( -2955) saved region 14877:20643 - closest 3' read 224197 ( -52) 14929:20643 ( +0) search for confused edges: tig 1995 read 527013 pos 16002-29062 NOT confused by 5' edge to read 306906 - best edge read 224197 len 4378 erate 0.0572 score 4127.58 - alt edge len 590 erate 0.0222 score 576.90 - absdiff 3550.68 percdiff 150.9487 tig 1995 read 527013 pos 16002-29062 NOT confused by 5' edge to read 308048 - best edge read 224197 len 4378 erate 0.0572 score 4127.58 - alt edge len 896 erate 0.0683 score 834.80 - absdiff 3292.78 percdiff 132.7095 discard region 14877:20643 - no confusion in best edges Annotating repeats in reads for tig 1999/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8754:10507 - closest read 109303 ( +0) 8754:14527 ( +4020) (contained) saved region 8754:10507 - closest read 109305 ( +0) 8754:14428 ( +3921) (contained) saved region 8754:10507 - closest 5' read 109303 ( +0) 8754:14527 ( +4020) saved region 8754:10507 - closest 3' read 109303 ( +0) 8754:14527 ( +4020) search for confused edges: discard region 8754:10507 - no confusion in best edges Annotating repeats in reads for tig 2002/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 20167:21635 - contained in read 120991 16691- 24390 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2003/113047. Annotated with 524 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 20519:26969 - closest 5' read 655147 ( +318) 20201:23888 ( -3081) saved region 20519:26969 - closest 3' read 94998 ( -90) 20609:29294 ( +2325) search for confused edges: tig 2003 read 29257 pos 17257-23281 IS confused by 5' edge to read 121352 - best edge read 94998 len 2637 erate 0.0682 score 2457.16 - alt edge len 1505 erate 0.0555 score 1421.47 - absdiff 1035.68 percdiff 53.4046 tig 2003 read 29257 pos 17257-23281 IS confused by 5' edge to read 243906 - best edge read 94998 len 2637 erate 0.0682 score 2457.16 - alt edge len 1519 erate 0.0557 score 1434.39 - absdiff 1022.76 percdiff 52.5634 tig 2003 read 29257 pos 17257-23281 IS confused by 5' edge to read 477357 - best edge read 94998 len 2637 erate 0.0682 score 2457.16 - alt edge len 1768 erate 0.0444 score 1689.50 - absdiff 767.66 percdiff 37.0253 tig 2003 read 29257 pos 17257-23281 IS confused by 5' edge to read 498841 - best edge read 94998 len 2637 erate 0.0682 score 2457.16 - alt edge len 1714 erate 0.0550 score 1619.73 - absdiff 837.43 percdiff 41.0817 tig 2003 read 29257 pos 17257-23281 IS confused by 5' edge to read 498843 - best edge read 94998 len 2637 erate 0.0682 score 2457.16 - alt edge len 1687 erate 0.0567 score 1591.35 - absdiff 865.81 percdiff 42.7718 saved region 20519:26969 - 5 best edges are potentially confused break tig 2003 into up to 3 pieces: 0 20019 unique (length 20019) 20019 27469 repeat (length 7450) 27469 29294 unique (length 1825) Creating Unitig 113503 Creating Unitig 113504 Creating Unitig 113505 For tig 2003 unique region 0 20019 - 0/ 31 reads repeat/unique - unitig 113503 created. For tig 2003 repeat region 20019 27469 - 51/ 0 reads repeat/unique - unitig 113504 created. For tig 2003 unique region 27469 29294 - 0/ 1 reads repeat/unique - unitig 113505 created. Annotating repeats in reads for tig 2005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2006/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 11319:12894 - contained in read 294519 7843- 16790 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2009/113047. Annotated with 988 overlaps. Scan reads to discard spanned repeats. discard region 1657:3879 - contained in read 91227 0- 7491 thickest edges to the repeat regions: saved region 3892:18274 - closest 5' read 289658 ( +0) 3892:15176 ( -3098) saved region 3892:18274 - closest 3' read 496065 ( -5790) 9682:18274 ( +0) search for confused edges: tig 2009 read 172419 pos 1720-9394 IS confused by 3' edge to read 55900 - best edge read 289657 len 3064 erate 0.0704 score 2848.29 - alt edge len 959 erate 0.0609 score 900.60 - absdiff 1947.70 percdiff 103.9079 tig 2009 read 172419 pos 1720-9394 IS confused by 3' edge to read 439337 - best edge read 289657 len 3064 erate 0.0704 score 2848.29 - alt edge len 2045 erate 0.0638 score 1914.53 - absdiff 933.77 percdiff 39.2106 tig 2009 read 289658 pos 3892-15176 NOT confused by 3' edge to read 12347 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 3655 erate 0.0711 score 3395.13 - absdiff 2383.65 percdiff 51.9658 tig 2009 read 289658 pos 3892-15176 NOT confused by 3' edge to read 12348 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 3591 erate 0.0649 score 3357.94 - absdiff 2420.83 percdiff 52.9913 tig 2009 read 289658 pos 3892-15176 NOT confused by 3' edge to read 44574 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 898 erate 0.0635 score 840.98 - absdiff 4937.80 percdiff 149.1838 tig 2009 read 289658 pos 3892-15176 NOT confused by 3' edge to read 50232 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 2501 erate 0.0610 score 2348.44 - absdiff 3430.34 percdiff 84.4161 tig 2009 read 289658 pos 3892-15176 NOT confused by 3' edge to read 275259 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 1197 erate 0.0635 score 1120.99 - absdiff 4657.79 percdiff 135.0129 tig 2009 read 289658 pos 3892-15176 IS confused by 3' edge to read 489805 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 4446 erate 0.0742 score 4116.11 - absdiff 1662.67 percdiff 33.6067 tig 2009 read 289658 pos 3892-15176 NOT confused by 3' edge to read 641325 - best edge read 396429 len 6108 erate 0.0539 score 5778.78 - alt edge len 2048 erate 0.0669 score 1910.99 - absdiff 3867.79 percdiff 100.5958 tig 2009 read 448133 pos 7750-14413 IS confused by 3' edge to read 12348 - best edge read 552907 len 5616 erate 0.0648 score 5252.08 - alt edge len 4995 erate 0.0731 score 4629.87 - absdiff 622.22 percdiff 12.5930 tig 2009 read 448133 pos 7750-14413 NOT confused by 3' edge to read 55900 - best edge read 552907 len 5616 erate 0.0648 score 5252.08 - alt edge len 1746 erate 0.0437 score 1669.70 - absdiff 3582.38 percdiff 103.5104 tig 2009 read 448133 pos 7750-14413 IS confused by 3' edge to read 304563 - best edge read 552907 len 5616 erate 0.0648 score 5252.08 - alt edge len 5491 erate 0.0686 score 5114.32 - absdiff 137.77 percdiff 2.6579 tig 2009 read 448133 pos 7750-14413 IS confused by 3' edge to read 304564 - best edge read 552907 len 5616 erate 0.0648 score 5252.08 - alt edge len 5550 erate 0.0671 score 5177.59 - absdiff 74.49 percdiff 1.4284 tig 2009 read 448133 pos 7750-14413 NOT confused by 5' edge to read 439337 - best edge read 396429 len 6181 erate 0.0730 score 5729.79 - alt edge len 3661 erate 0.0502 score 3477.22 - absdiff 2252.57 percdiff 48.9316 tig 2009 read 448133 pos 7750-14413 IS confused by 5' edge to read 481005 - best edge read 396429 len 6181 erate 0.0730 score 5729.79 - alt edge len 5016 erate 0.0698 score 4665.88 - absdiff 1063.90 percdiff 20.4682 tig 2009 read 448133 pos 7750-14413 NOT confused by 5' edge to read 718252 - best edge read 396429 len 6181 erate 0.0730 score 5729.79 - alt edge len 2917 erate 0.0744 score 2699.98 - absdiff 3029.81 percdiff 71.8837 tig 2009 read 396429 pos 7897-15150 NOT confused by 5' edge to read 16432 - best edge read 289658 len 6163 erate 0.0539 score 5830.81 - alt edge len 659 erate 0.0627 score 617.68 - absdiff 5213.13 percdiff 161.6853 tig 2009 read 396429 pos 7897-15150 NOT confused by 5' edge to read 55900 - best edge read 289658 len 6163 erate 0.0539 score 5830.81 - alt edge len 709 erate 0.0455 score 676.74 - absdiff 5154.07 percdiff 158.4028 tig 2009 read 396429 pos 7897-15150 NOT confused by 5' edge to read 439337 - best edge read 289658 len 6163 erate 0.0539 score 5830.81 - alt edge len 715 erate 0.0465 score 681.75 - absdiff 5149.06 percdiff 158.1270 tig 2009 read 396429 pos 7897-15150 NOT confused by 5' edge to read 481005 - best edge read 289658 len 6163 erate 0.0539 score 5830.81 - alt edge len 3082 erate 0.0587 score 2901.09 - absdiff 2929.73 percdiff 67.1040 tig 2009 read 396429 pos 7897-15150 NOT confused by 3' edge to read 641325 - best edge read 448133 len 6189 erate 0.0730 score 5737.20 - alt edge len 3084 erate 0.0646 score 2884.77 - absdiff 2852.43 percdiff 66.1665 tig 2009 read 396429 pos 7897-15150 NOT confused by 5' edge to read 718252 - best edge read 289658 len 6163 erate 0.0539 score 5830.81 - alt edge len 942 erate 0.0578 score 887.55 - absdiff 4943.26 percdiff 147.1567 tig 2009 read 552907 pos 8757-16646 NOT confused by 5' edge to read 16432 - best edge read 448133 len 5623 erate 0.0648 score 5258.63 - alt edge len 723 erate 0.0555 score 682.87 - absdiff 4575.76 percdiff 154.0269 tig 2009 read 552907 pos 8757-16646 NOT confused by 5' edge to read 334431 - best edge read 448133 len 5623 erate 0.0648 score 5258.63 - alt edge len 888 erate 0.0677 score 827.88 - absdiff 4430.75 percdiff 145.5923 tig 2009 read 552907 pos 8757-16646 IS confused by 5' edge to read 439337 - best edge read 448133 len 5623 erate 0.0648 score 5258.63 - alt edge len 3680 erate 0.0430 score 3521.76 - absdiff 1736.87 percdiff 39.5625 tig 2009 read 552907 pos 8757-16646 IS confused by 5' edge to read 481005 - best edge read 448133 len 5623 erate 0.0648 score 5258.63 - alt edge len 5030 erate 0.0661 score 4697.52 - absdiff 561.11 percdiff 11.2717 tig 2009 read 552907 pos 8757-16646 NOT confused by 5' edge to read 597163 - best edge read 448133 len 5623 erate 0.0648 score 5258.63 - alt edge len 1700 erate 0.0618 score 1594.94 - absdiff 3663.69 percdiff 106.9133 tig 2009 read 552907 pos 8757-16646 NOT confused by 5' edge to read 718252 - best edge read 448133 len 5623 erate 0.0648 score 5258.63 - alt edge len 2939 erate 0.0664 score 2743.85 - absdiff 2514.78 percdiff 62.8500 saved region 3892:18274 - 9 best edges are potentially confused break tig 2009 into up to 2 pieces: 0 3392 unique (length 3392) 3392 18274 repeat (length 14882) Creating Unitig 113506 Creating Unitig 113507 For tig 2009 unique region 0 3392 - 0/ 9 reads repeat/unique - unitig 113506 created. For tig 2009 repeat region 3392 18274 - 167/ 0 reads repeat/unique - unitig 113507 created. Annotating repeats in reads for tig 2013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2015/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 8787:5318 - contained in read 97181 0- 8259 discard region 8941:13575 - contained in read 171722 6497- 13575 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2016/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2018/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 10500:9915 - contained in read 458823 5355- 11505 discard region 11934:14379 - contained in read 538569 9897- 16556 thickest edges to the repeat regions: saved region 5355:6615 - closest read 458823 ( +0) 5355:11505 ( +4890) (contained) saved region 5355:6615 - closest 5' read 458823 ( +0) 5355:11505 ( +4890) saved region 5355:6615 - closest 3' read 458823 ( +0) 5355:11505 ( +4890) search for confused edges: discard region 5355:6615 - no confusion in best edges Annotating repeats in reads for tig 2019/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8770:14391 - closest read 142853 ( +0) 8770:15277 ( +886) (contained) saved region 8770:14391 - closest 5' read 142853 ( +0) 8770:15277 ( +886) saved region 8770:14391 - closest 3' read 142853 ( +0) 8770:15277 ( +886) search for confused edges: discard region 8770:14391 - no confusion in best edges Annotating repeats in reads for tig 2021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2024/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2027/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6059:9364 - contained in read 390022 2853- 9364 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2029/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 24449:25387 - contained in read 399654 19934- 26690 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2030/113047. Annotated with 377 overlaps. Scan reads to discard spanned repeats. discard region 12865:19278 - contained in read 498323 9312- 19278 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2032/113047. Annotated with 362 overlaps. Scan reads to discard spanned repeats. discard region 8116:10558 - contained in read 414674 4709- 11130 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2037/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 1822:3299 - contained in read 586980 0- 7849 discard region 10222:11097 - contained in read 400854 7375- 12152 discard region 14839:16756 - contained in read 562803 11291- 19239 discard region 17864:19262 - contained in read 146389 14423- 22331 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2042/113047. Annotated with 487 overlaps. Scan reads to discard spanned repeats. discard region 13031:18383 - contained in read 153020 7221- 20596 thickest edges to the repeat regions: saved region 19750:22706 - closest 5' read 608981 ( +0) 19750:21886 ( -820) saved region 19750:22706 - closest 3' read 693298 ( -8) 19758:23668 ( +962) saved region 22901:23998 - closest read 669036 ( +0) 22901:32503 ( +8505) (contained) saved region 22901:23998 - closest 5' read 669036 ( +0) 22901:32503 ( +8505) saved region 22901:23998 - closest 3' read 669036 ( +0) 22901:32503 ( +8505) search for confused edges: tig 2042 read 153020 pos 7221-20596 IS confused by 3' edge to read 441438 - best edge read 693298 len 797 erate 0.0602 score 749.02 - alt edge len 774 erate 0.0714 score 718.74 - absdiff 30.28 percdiff 4.1266 tig 2042 read 153020 pos 7221-20596 IS confused by 3' edge to read 486157 - best edge read 693298 len 797 erate 0.0602 score 749.02 - alt edge len 765 erate 0.0706 score 710.99 - absdiff 38.03 percdiff 5.2095 tig 2042 read 153020 pos 7221-20596 IS confused by 3' edge to read 636094 - best edge read 693298 len 797 erate 0.0602 score 749.02 - alt edge len 514 erate 0.0652 score 480.49 - absdiff 268.53 percdiff 43.6814 saved region 19750:22706 - 3 best edges are potentially confused discard region 22901:23998 - no confusion in best edges break tig 2042 into up to 3 pieces: 0 19250 unique (length 19250) 19250 23206 repeat (length 3956) 23206 35053 unique (length 11847) Creating Unitig 113508 Creating Unitig 113509 Creating Unitig 113510 For tig 2042 unique region 0 19250 - 0/ 35 reads repeat/unique - unitig 113508 created. For tig 2042 repeat region 19250 23206 - 46/ 0 reads repeat/unique - unitig 113509 created. For tig 2042 unique region 23206 35053 - 0/ 15 reads repeat/unique - unitig 113510 created. Annotating repeats in reads for tig 2044/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2476:5612 - contained in read 180616 395- 5612 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2051/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10052:15640 - closest read 317039 ( +481) 9571:15691 ( +51) (contained) saved region 10052:15640 - closest read 317037 ( +455) 9597:15653 ( +13) (contained) saved region 10052:15640 - closest read 317038 ( +454) 9598:15711 ( +71) (contained) saved region 10052:15640 - closest read 141580 ( +422) 9630:18753 ( +3113) (contained) saved region 10052:15640 - closest read 317040 ( +133) 9919:15694 ( +54) (contained) saved region 10052:15640 - closest 5' read 141580 ( +422) 9630:18753 ( +3113) saved region 10052:15640 - closest 3' read 317039 ( +481) 9571:15691 ( +51) search for confused edges: discard region 10052:15640 - no confusion in best edges Annotating repeats in reads for tig 2053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2057/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 228:3994 - contained in read 537428 0- 5865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2060/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 20848:19525 - contained in read 35042 14567- 20349 thickest edges to the repeat regions: saved region 14201:15889 - closest read 716640 ( +5120) 9081:15889 ( +0) (contained) saved region 14201:15889 - closest read 716639 ( +5120) 9081:15889 ( +0) (contained) saved region 14201:15889 - closest 5' read 716640 ( +5120) 9081:15889 ( +0) saved region 14201:15889 - closest 3' read 716640 ( +5120) 9081:15889 ( +0) search for confused edges: discard region 14201:15889 - no confusion in best edges Annotating repeats in reads for tig 2062/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6713:7730 - contained in read 147344 0- 9775 discard region 18961:20828 - contained in read 522408 13077- 24382 discard region 21586:22725 - contained in read 522408 13077- 24382 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2065/113047. Annotated with 488 overlaps. Scan reads to discard spanned repeats. discard region 10989:14081 - contained in read 295665 5710- 14663 thickest edges to the repeat regions: saved region 970:8038 - closest 5' read 316476 ( +946) 24:6932 ( -1106) saved region 970:8038 - closest 3' read 295665 ( -4740) 5710:14663 ( +6625) saved region 15302:17092 - closest read 520893 ( +0) 15302:28156 (+11064) (contained) saved region 15302:17092 - closest 5' read 520893 ( +0) 15302:28156 (+11064) saved region 15302:17092 - closest 3' read 520893 ( +0) 15302:28156 (+11064) saved region 18221:30748 - closest 5' read 520893 ( +2919) 15302:28156 ( -2592) saved region 18221:30748 - closest 3' read 173499 ( -1478) 19699:33198 ( +2450) search for confused edges: tig 2065 read 274701 pos 18780-26537 NOT confused by 3' edge to read 184184 - best edge read 173499 len 4753 erate 0.0110 score 4700.72 - alt edge len 910 erate 0.0288 score 883.79 - absdiff 3816.92 percdiff 136.6969 tig 2065 read 274701 pos 18780-26537 NOT confused by 5' edge to read 332860 - best edge read 155880 len 6829 erate 0.0169 score 6713.59 - alt edge len 653 erate 0.0217 score 638.83 - absdiff 6074.76 percdiff 165.2452 tig 2065 read 274701 pos 18780-26537 IS confused by 3' edge to read 592902 - best edge read 173499 len 4753 erate 0.0110 score 4700.72 - alt edge len 3620 erate 0.0181 score 3554.48 - absdiff 1146.24 percdiff 27.7701 tig 2065 read 274701 pos 18780-26537 IS confused by 3' edge to read 592903 - best edge read 173499 len 4753 erate 0.0110 score 4700.72 - alt edge len 3618 erate 0.0159 score 3560.47 - absdiff 1140.24 percdiff 27.6048 tig 2065 read 274701 pos 18780-26537 NOT confused by 5' edge to read 623340 - best edge read 155880 len 6829 erate 0.0169 score 6713.59 - alt edge len 1863 erate 0.0349 score 1797.98 - absdiff 4915.61 percdiff 115.5041 tig 2065 read 155880 pos 20802-27968 NOT confused by 5' edge to read 332860 - best edge read 520893 len 4637 erate 0.0073 score 4603.15 - alt edge len 860 erate 0.0249 score 838.59 - absdiff 3764.56 percdiff 138.3589 tig 2065 read 155880 pos 20802-27968 NOT confused by 3' edge to read 469556 - best edge read 274701 len 6845 erate 0.0169 score 6729.32 - alt edge len 667 erate 0.0240 score 650.99 - absdiff 6078.33 percdiff 164.7174 tig 2065 read 155880 pos 20802-27968 NOT confused by 3' edge to read 469558 - best edge read 274701 len 6845 erate 0.0169 score 6729.32 - alt edge len 669 erate 0.0224 score 654.01 - absdiff 6075.31 percdiff 164.5681 tig 2065 read 155880 pos 20802-27968 NOT confused by 3' edge to read 592902 - best edge read 274701 len 6845 erate 0.0169 score 6729.32 - alt edge len 2820 erate 0.0236 score 2753.45 - absdiff 3975.87 percdiff 83.8547 tig 2065 read 155880 pos 20802-27968 NOT confused by 3' edge to read 592903 - best edge read 274701 len 6845 erate 0.0169 score 6729.32 - alt edge len 2818 erate 0.0171 score 2769.81 - absdiff 3959.51 percdiff 83.3657 tig 2065 read 155880 pos 20802-27968 NOT confused by 5' edge to read 623340 - best edge read 520893 len 4637 erate 0.0073 score 4603.15 - alt edge len 2068 erate 0.0387 score 1987.97 - absdiff 2615.18 percdiff 79.3547 discard region 970:8038 - no confusion in best edges discard region 15302:17092 - no confusion in best edges saved region 18221:30748 - 2 best edges are potentially confused break tig 2065 into up to 3 pieces: 0 17721 unique (length 17721) 17721 31248 repeat (length 13527) 31248 36913 unique (length 5665) Creating Unitig 113511 Creating Unitig 113512 Creating Unitig 113513 For tig 2065 unique region 0 17721 - 0/ 17 reads repeat/unique - unitig 113511 created. For tig 2065 repeat region 17721 31248 - 148/ 0 reads repeat/unique - unitig 113512 created. For tig 2065 unique region 31248 36913 - 0/ 7 reads repeat/unique - unitig 113513 created. Annotating repeats in reads for tig 2066/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2069/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 2844:4664 - contained in read 395856 0- 8390 discard region 5145:7345 - contained in read 395856 0- 8390 discard region 12272:18756 - contained in read 203580 11122- 21034 discard region 21780:26345 - contained in read 527653 16009- 30676 discard region 35797:38545 - contained in read 161459 29594- 38545 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2070/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 16744:19421 - contained in read 631994 12025- 26828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2074/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 7536:9187 - contained in read 323546 4161- 10155 discard region 12503:14517 - contained in read 99074 6037- 15421 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2085/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2086/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4257:4834 - contained in read 179931 0- 9407 discard region 6215:5491 - contained in read 179931 0- 9407 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2087/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2088/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 15563:18904 - contained in read 77844 10070- 19882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2092/113047. Annotated with 1030 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1827:22602 - closest 5' read 180952 ( +0) 1827:15003 ( -7599) saved region 1827:22602 - closest 3' read 554038 ( -8945) 10772:23499 ( +897) search for confused edges: tig 2092 read 296685 pos 2681-15655 NOT confused by 5' edge to read 47722 - best edge read 157512 len 5226 erate 0.0334 score 5051.45 - alt edge len 1178 erate 0.0529 score 1115.68 - absdiff 3935.77 percdiff 127.6368 tig 2092 read 296685 pos 2681-15655 IS confused by 3' edge to read 580489 - best edge read 666241 len 5267 erate 0.0288 score 5115.31 - alt edge len 3505 erate 0.0750 score 3242.12 - absdiff 1873.19 percdiff 44.8268 tig 2092 read 296685 pos 2681-15655 NOT confused by 3' edge to read 719934 - best edge read 666241 len 5267 erate 0.0288 score 5115.31 - alt edge len 3026 erate 0.0582 score 2849.89 - absdiff 2265.42 percdiff 56.8831 tig 2092 read 666241 pos 4452-22161 NOT confused by 5' edge to read 47722 - best edge read 296685 len 5255 erate 0.0288 score 5103.66 - alt edge len 1138 erate 0.0480 score 1083.38 - absdiff 4020.28 percdiff 129.9583 tig 2092 read 666241 pos 4452-22161 NOT confused by 5' edge to read 98554 - best edge read 296685 len 5255 erate 0.0288 score 5103.66 - alt edge len 2447 erate 0.0382 score 2353.52 - absdiff 2750.13 percdiff 73.7579 tig 2092 read 157512 pos 4689-11707 NOT confused by 3' edge to read 22265 - best edge read 296685 len 5333 erate 0.0334 score 5154.88 - alt edge len 2104 erate 0.0508 score 1997.12 - absdiff 3157.76 percdiff 88.3043 tig 2092 read 157512 pos 4689-11707 NOT confused by 3' edge to read 719934 - best edge read 296685 len 5333 erate 0.0334 score 5154.88 - alt edge len 636 erate 0.0477 score 605.66 - absdiff 4549.22 percdiff 157.9440 tig 2092 read 607748 pos 4886-21529 NOT confused by 3' edge to read 98554 - best edge read 666241 len 13400 erate 0.0300 score 12998.00 - alt edge len 1289 erate 0.0357 score 1242.98 - absdiff 11755.02 percdiff 165.0872 tig 2092 read 38277 pos 6544-14173 NOT confused by 3' edge to read 22265 - best edge read 373632 len 6942 erate 0.0335 score 6709.44 - alt edge len 1867 erate 0.0628 score 1749.75 - absdiff 4959.69 percdiff 117.2615 tig 2092 read 38277 pos 6544-14173 IS confused by 5' edge to read 47722 - best edge read 202758 len 2766 erate 0.0401 score 2655.08 - alt edge len 1245 erate 0.0373 score 1198.56 - absdiff 1456.52 percdiff 75.5919 tig 2092 read 373632 pos 7365-14486 NOT confused by 3' edge to read 22265 - best edge read 157512 len 6690 erate 0.0344 score 6459.86 - alt edge len 1930 erate 0.0554 score 1823.08 - absdiff 4636.79 percdiff 111.9599 tig 2092 read 373632 pos 7365-14486 NOT confused by 5' edge to read 47722 - best edge read 38277 len 6904 erate 0.0335 score 6672.72 - alt edge len 693 erate 0.0420 score 663.89 - absdiff 6008.82 percdiff 163.8038 tig 2092 read 22265 pos 15006-21778 IS confused by 3' edge to read 38277 - best edge read 607748 len 2914 erate 0.0604 score 2737.99 - alt edge len 1817 erate 0.0628 score 1702.89 - absdiff 1035.10 percdiff 46.6169 tig 2092 read 22265 pos 15006-21778 IS confused by 3' edge to read 98554 - best edge read 607748 len 2914 erate 0.0604 score 2737.99 - alt edge len 1652 erate 0.0618 score 1549.91 - absdiff 1188.09 percdiff 55.4158 tig 2092 read 22265 pos 15006-21778 IS confused by 3' edge to read 157512 - best edge read 607748 len 2914 erate 0.0604 score 2737.99 - alt edge len 2049 erate 0.0508 score 1944.91 - absdiff 793.08 percdiff 33.8714 tig 2092 read 22265 pos 15006-21778 IS confused by 3' edge to read 373632 - best edge read 607748 len 2914 erate 0.0604 score 2737.99 - alt edge len 1898 erate 0.0554 score 1792.85 - absdiff 945.14 percdiff 41.7204 saved region 1827:22602 - 6 best edges are potentially confused break tig 2092 into up to 3 pieces: 0 1327 unique (length 1327) 1327 23102 repeat (length 21775) 23102 24286 unique (length 1184) Creating Unitig 113514 Creating Unitig 113515 Creating Unitig 113516 For tig 2092 unique region 0 1327 - 0/ 3 reads repeat/unique - unitig 113514 created. For tig 2092 repeat region 1327 23102 - 295/ 0 reads repeat/unique - unitig 113515 created. For tig 2092 unique region 23102 24286 - 0/ 3 reads repeat/unique - unitig 113516 created. Annotating repeats in reads for tig 2094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2095/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 8848:5760 - contained in read 204637 130- 6819 thickest edges to the repeat regions: saved region 11943:16464 - closest read 427990 ( +0) 11943:16744 ( +280) (contained) saved region 11943:16464 - closest 5' read 427990 ( +0) 11943:16744 ( +280) saved region 11943:16464 - closest 3' read 427990 ( +0) 11943:16744 ( +280) search for confused edges: discard region 11943:16464 - no confusion in best edges Annotating repeats in reads for tig 2097/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 23113:24942 - contained in read 211079 20607- 26217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2100/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7150:9549 - closest 5' read 338537 ( +0) 7150:9540 ( -9) saved region 7150:9549 - closest 3' read 228488 ( -11) 7161:12220 ( +2671) search for confused edges: tig 2100 read 228488 pos 7161-12220 IS confused by 5' edge to read 187984 - best edge read 287343 len 977 erate 0.0494 score 928.74 - alt edge len 884 erate 0.0638 score 827.60 - absdiff 101.14 percdiff 11.5166 tig 2100 read 228488 pos 7161-12220 IS confused by 5' edge to read 187985 - best edge read 287343 len 977 erate 0.0494 score 928.74 - alt edge len 888 erate 0.0612 score 833.65 - absdiff 95.08 percdiff 10.7901 tig 2100 read 228488 pos 7161-12220 IS confused by 5' edge to read 692372 - best edge read 287343 len 977 erate 0.0494 score 928.74 - alt edge len 899 erate 0.0649 score 840.65 - absdiff 88.08 percdiff 9.9561 saved region 7150:9549 - 3 best edges are potentially confused break tig 2100 into up to 3 pieces: 0 6650 unique (length 6650) 6650 10049 repeat (length 3399) 10049 20868 unique (length 10819) Creating Unitig 113517 Creating Unitig 113518 Creating Unitig 113519 For tig 2100 unique region 0 6650 - 0/ 3 reads repeat/unique - unitig 113517 created. For tig 2100 repeat region 6650 10049 - 13/ 0 reads repeat/unique - unitig 113518 created. For tig 2100 unique region 10049 20868 - 0/ 30 reads repeat/unique - unitig 113519 created. Annotating repeats in reads for tig 2103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2105/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2111/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9924:11259 - contained in read 163786 765- 12053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2113/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13853:13236 - contained in read 649540 10798- 17491 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2117/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 9033:9818 - contained in read 114456 2696- 10582 discard region 14247:15399 - contained in read 602137 12564- 20375 discard region 15611:19023 - contained in read 602137 12564- 20375 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2119/113047. Annotated with 200 overlaps. Scan reads to discard spanned repeats. discard region 0:8595 - contained in read 592903 0- 10914 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2122/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2125/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 6453:9430 - contained in read 679498 5112- 11673 thickest edges to the repeat regions: saved region 4993:5928 - closest read 240422 ( +4983) 10:5928 ( +0) (contained) saved region 4993:5928 - closest 5' read 240422 ( +4983) 10:5928 ( +0) saved region 4993:5928 - closest 3' read 240422 ( +4983) 10:5928 ( +0) search for confused edges: discard region 4993:5928 - no confusion in best edges Annotating repeats in reads for tig 2127/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 545:6986 - closest 5' read 45500 ( +541) 4:6871 ( -115) saved region 545:6986 - closest 3' read 19509 ( -5712) 6257:14102 ( +7116) search for confused edges: discard region 545:6986 - no confusion in best edges Annotating repeats in reads for tig 2130/113047. Annotated with 201 overlaps. Scan reads to discard spanned repeats. discard region 6132:5508 - contained in read 249813 0- 6084 discard region 16754:18444 - contained in read 384255 14996- 19144 thickest edges to the repeat regions: saved region 14962:16682 - closest 5' read 16605 ( +5515) 9447:15697 ( -985) saved region 14962:16682 - closest 3' read 384255 ( -34) 14996:19144 ( +2462) search for confused edges: tig 2130 read 16610 pos 9442-15691 IS confused by 3' edge to read 175693 - best edge read 384255 len 697 erate 0.0287 score 677.00 - alt edge len 664 erate 0.0634 score 621.90 - absdiff 55.09 percdiff 8.4831 saved region 14962:16682 - 1 best edges are potentially confused break tig 2130 into up to 3 pieces: 0 14462 unique (length 14462) 14462 17182 repeat (length 2720) 17182 23104 unique (length 5922) Creating Unitig 113520 Creating Unitig 113521 Creating Unitig 113522 For tig 2130 unique region 0 14462 - 0/ 18 reads repeat/unique - unitig 113520 created. For tig 2130 repeat region 14462 17182 - 1/ 0 reads repeat/unique - unitig 113522 created. For tig 2130 unique region 17182 23104 - 0/ 4 reads repeat/unique - unitig 113521 created. Annotating repeats in reads for tig 2136/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4905:6358 - closest read 287513 ( +0) 4905:10009 ( +3651) (contained) saved region 4905:6358 - closest 5' read 287513 ( +0) 4905:10009 ( +3651) saved region 4905:6358 - closest 3' read 287513 ( +0) 4905:10009 ( +3651) search for confused edges: tig 2136 read 281069 pos 14-5767 IS confused by 3' edge to read 283984 - best edge read 287513 len 846 erate 0.0404 score 811.82 - alt edge len 841 erate 0.0511 score 798.02 - absdiff 13.80 percdiff 1.7140 tig 2136 read 281069 pos 14-5767 IS confused by 3' edge to read 623519 - best edge read 287513 len 846 erate 0.0404 score 811.82 - alt edge len 525 erate 0.0667 score 489.98 - absdiff 321.84 percdiff 49.4451 tig 2136 read 281069 pos 14-5767 IS confused by 3' edge to read 623521 - best edge read 287513 len 846 erate 0.0404 score 811.82 - alt edge len 512 erate 0.0723 score 474.98 - absdiff 336.84 percdiff 52.3528 saved region 4905:6358 - 3 best edges are potentially confused break tig 2136 into up to 3 pieces: 0 4405 unique (length 4405) 4405 6858 repeat (length 2453) 6858 33023 unique (length 26165) Creating Unitig 113523 Creating Unitig 113524 Creating Unitig 113525 For tig 2136 unique region 0 4405 - 0/ 2 reads repeat/unique - unitig 113523 created. For tig 2136 repeat region 4405 6858 - 1/ 0 reads repeat/unique - unitig 113525 created. For tig 2136 unique region 6858 33023 - 0/ 55 reads repeat/unique - unitig 113524 created. Annotating repeats in reads for tig 2139/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. discard region 0:4977 - contained in read 254971 0- 6217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2142/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2146/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13812:14376 - contained in read 302895 9982- 15965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2150/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 18315:18972 - closest read 63838 ( +6864) 11451:19012 ( +40) (contained) saved region 18315:18972 - closest read 507042 ( +10) 18305:24165 ( +5193) (contained) saved region 18315:18972 - closest read 507044 ( +0) 18315:24183 ( +5211) (contained) saved region 18315:18972 - closest 5' read 507044 ( +0) 18315:24183 ( +5211) saved region 18315:18972 - closest 3' read 63838 ( +6864) 11451:19012 ( +40) search for confused edges: discard region 18315:18972 - no confusion in best edges Annotating repeats in reads for tig 2151/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9347 - closest 5' read 347885 ( +0) 0:8530 ( -817) saved region 0:9347 - closest 3' read 397651 ( -2426) 2426:10021 ( +674) search for confused edges: tig 2151 read 77608 pos 1166-8786 NOT confused by 3' edge to read 2168 - best edge read 347885 len 7486 erate 0.0111 score 7402.91 - alt edge len 1030 erate 0.0724 score 955.43 - absdiff 6447.48 percdiff 154.2766 tig 2151 read 77608 pos 1166-8786 NOT confused by 3' edge to read 119715 - best edge read 347885 len 7486 erate 0.0111 score 7402.91 - alt edge len 2094 erate 0.0599 score 1968.57 - absdiff 5434.34 percdiff 115.9761 tig 2151 read 77608 pos 1166-8786 NOT confused by 3' edge to read 130098 - best edge read 347885 len 7486 erate 0.0111 score 7402.91 - alt edge len 1773 erate 0.0632 score 1660.95 - absdiff 5741.96 percdiff 126.7002 tig 2151 read 77608 pos 1166-8786 NOT confused by 3' edge to read 364107 - best edge read 347885 len 7486 erate 0.0111 score 7402.91 - alt edge len 3520 erate 0.0721 score 3266.21 - absdiff 4136.70 percdiff 77.5453 tig 2151 read 77608 pos 1166-8786 IS confused by 3' edge to read 493642 - best edge read 347885 len 7486 erate 0.0111 score 7402.91 - alt edge len 6275 erate 0.0116 score 6202.21 - absdiff 1200.70 percdiff 17.6506 tig 2151 read 77608 pos 1166-8786 NOT confused by 3' edge to read 713076 - best edge read 347885 len 7486 erate 0.0111 score 7402.91 - alt edge len 2358 erate 0.0601 score 2216.28 - absdiff 5186.62 percdiff 107.8390 tig 2151 read 247359 pos 4053-10861 IS confused by 5' edge to read 2168 - best edge read 347885 len 4273 erate 0.0211 score 4182.84 - alt edge len 2628 erate 0.0692 score 2446.14 - absdiff 1736.70 percdiff 52.3971 tig 2151 read 247359 pos 4053-10861 NOT confused by 5' edge to read 228932 - best edge read 347885 len 4273 erate 0.0211 score 4182.84 - alt edge len 2170 erate 0.0680 score 2022.44 - absdiff 2160.40 percdiff 69.6310 tig 2151 read 247359 pos 4053-10861 NOT confused by 5' edge to read 257988 - best edge read 347885 len 4273 erate 0.0211 score 4182.84 - alt edge len 646 erate 0.0436 score 617.83 - absdiff 3565.01 percdiff 148.5210 tig 2151 read 247359 pos 4053-10861 IS confused by 5' edge to read 285941 - best edge read 347885 len 4273 erate 0.0211 score 4182.84 - alt edge len 2370 erate 0.0173 score 2329.00 - absdiff 1853.84 percdiff 56.9375 tig 2151 read 247359 pos 4053-10861 NOT confused by 5' edge to read 451900 - best edge read 347885 len 4273 erate 0.0211 score 4182.84 - alt edge len 1338 erate 0.0240 score 1305.89 - absdiff 2876.95 percdiff 104.8313 tig 2151 read 247359 pos 4053-10861 NOT confused by 5' edge to read 493642 - best edge read 347885 len 4273 erate 0.0211 score 4182.84 - alt edge len 1873 erate 0.0322 score 1812.69 - absdiff 2370.15 percdiff 79.0639 saved region 0:9347 - 3 best edges are potentially confused break tig 2151 into up to 2 pieces: 0 9847 repeat (length 9847) 9847 18476 unique (length 8629) Creating Unitig 113526 Creating Unitig 113527 For tig 2151 repeat region 0 9847 - 14/ 0 reads repeat/unique - unitig 113526 created. For tig 2151 unique region 9847 18476 - 0/ 17 reads repeat/unique - unitig 113527 created. Annotating repeats in reads for tig 2152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2153/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9353:11547 - closest read 654925 ( +432) 8921:12880 ( +1333) (contained) saved region 9353:11547 - closest read 603714 ( +140) 9213:15112 ( +3565) (contained) saved region 9353:11547 - closest read 603716 ( +138) 9215:15115 ( +3568) (contained) saved region 9353:11547 - closest read 603717 ( +113) 9240:13746 ( +2199) (contained) saved region 9353:11547 - closest read 603715 ( +0) 9353:15121 ( +3574) (contained) saved region 9353:11547 - closest 5' read 603715 ( +0) 9353:15121 ( +3574) saved region 9353:11547 - closest 3' read 654925 ( +432) 8921:12880 ( +1333) search for confused edges: discard region 9353:11547 - no confusion in best edges Annotating repeats in reads for tig 2155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2156/113047. Annotated with 115 overlaps. Scan reads to discard spanned repeats. discard region 1182:9812 - contained in read 636574 0- 12252 discard region 10555:12252 - contained in read 691621 4614- 13378 discard region 14095:15073 - contained in read 182810 9696- 19992 discard region 18537:21752 - contained in read 216318 17765- 25738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2163/113047. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3350:11506 - closest 5' read 207509 ( +303) 3047:11332 ( -174) saved region 3350:11506 - closest 3' read 123633 ( -7229) 10579:22906 (+11400) search for confused edges: tig 2163 read 123633 pos 10579-22906 IS confused by 3' edge to read 394834 - best edge read 207509 len 752 erate 0.0691 score 700.04 - alt edge len 568 erate 0.0741 score 525.91 - absdiff 174.13 percdiff 28.4067 saved region 3350:11506 - 1 best edges are potentially confused break tig 2163 into up to 3 pieces: 0 2850 unique (length 2850) 2850 12006 repeat (length 9156) 12006 39182 unique (length 27176) Creating Unitig 113528 Creating Unitig 113529 Creating Unitig 113530 For tig 2163 unique region 0 2850 - 0/ 2 reads repeat/unique - unitig 113528 created. For tig 2163 repeat region 2850 12006 - 7/ 0 reads repeat/unique - unitig 113529 created. For tig 2163 unique region 12006 39182 - 0/ 20 reads repeat/unique - unitig 113530 created. Annotating repeats in reads for tig 2166/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12875:15050 - contained in read 421164 11099- 17122 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2167/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2170/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 3627:6010 - contained in read 483106 0- 8046 discard region 7282:8078 - contained in read 561732 6217- 13930 discard region 13335:14173 - contained in read 370548 12542- 22087 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2171/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2174/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11830:14728 - closest 5' read 616123 ( +4473) 7357:12828 ( -1900) saved region 11830:14728 - closest 3' read 506768 ( -5) 11835:18340 ( +3612) search for confused edges: discard region 11830:14728 - no confusion in best edges Annotating repeats in reads for tig 2183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2189/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 2466:928 - contained in read 310116 0- 5542 discard region 6171:9354 - contained in read 266466 3870- 9354 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2190/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:718 - contained in read 120423 0- 8708 discard region 11154:14285 - contained in read 241709 7021- 14853 discard region 18376:22043 - contained in read 310499 17248- 22069 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2196/113047. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10489:17533 - closest read 716207 ( +0) 10489:24722 ( +7189) (contained) saved region 10489:17533 - closest 5' read 716207 ( +0) 10489:24722 ( +7189) saved region 10489:17533 - closest 3' read 716207 ( +0) 10489:24722 ( +7189) search for confused edges: discard region 10489:17533 - no confusion in best edges Annotating repeats in reads for tig 2198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2200/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 4307:6889 - contained in read 205427 184- 8415 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2205/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 16600:17295 - contained in read 158261 15955- 21659 discard region 20990:21709 - contained in read 333650 18393- 22804 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2207/113047. Annotated with 1221 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4128:10279 - closest 5' read 581053 ( +2835) 1293:10235 ( -44) saved region 4128:10279 - closest 3' read 694296 ( -297) 4425:10279 ( +0) search for confused edges: tig 2207 read 43860 pos 8962-15082 IS confused by 5' edge to read 20379 - best edge read 581053 len 1247 erate 0.0574 score 1175.42 - alt edge len 693 erate 0.0524 score 656.69 - absdiff 518.74 percdiff 56.6271 saved region 4128:10279 - 1 best edges are potentially confused break tig 2207 into up to 3 pieces: 0 3628 unique (length 3628) 3628 10779 repeat (length 7151) 10779 28402 unique (length 17623) Creating Unitig 113531 Creating Unitig 113532 Creating Unitig 113533 For tig 2207 unique region 0 3628 - 0/ 3 reads repeat/unique - unitig 113531 created. For tig 2207 repeat region 3628 10779 - 96/ 0 reads repeat/unique - unitig 113532 created. For tig 2207 unique region 10779 28402 - 0/ 24 reads repeat/unique - unitig 113533 created. Annotating repeats in reads for tig 2209/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 21126:21778 - contained in read 493839 11825- 24936 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2210/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4249:9487 - closest 5' read 427900 ( +0) 4249:8002 ( -1485) saved region 4249:9487 - closest 3' read 348991 ( -961) 5210:11106 ( +1619) search for confused edges: discard region 4249:9487 - no confusion in best edges Annotating repeats in reads for tig 2211/113047. Annotated with 424 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 934:16255 - closest 5' read 29765 ( +934) 0:6586 ( -9669) saved region 934:16255 - closest 3' read 338205 ( -8353) 9287:16255 ( +0) search for confused edges: tig 2211 read 339820 pos 5795-13325 NOT confused by 3' edge to read 40953 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 1108 erate 0.0429 score 1060.47 - absdiff 2784.48 percdiff 113.5269 tig 2211 read 339820 pos 5795-13325 NOT confused by 3' edge to read 65341 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 1750 erate 0.0720 score 1624.00 - absdiff 2220.95 percdiff 81.2204 tig 2211 read 339820 pos 5795-13325 IS confused by 5' edge to read 270590 - best edge read 29764 len 787 erate 0.0410 score 754.73 - alt edge len 609 erate 0.0480 score 579.77 - absdiff 174.96 percdiff 26.2218 tig 2211 read 339820 pos 5795-13325 IS confused by 5' edge to read 270592 - best edge read 29764 len 787 erate 0.0410 score 754.73 - alt edge len 595 erate 0.0492 score 565.73 - absdiff 189.01 percdiff 28.6275 tig 2211 read 339820 pos 5795-13325 NOT confused by 3' edge to read 284289 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 1216 erate 0.0518 score 1153.01 - absdiff 2691.94 percdiff 107.7215 tig 2211 read 339820 pos 5795-13325 NOT confused by 3' edge to read 313456 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 1453 erate 0.0695 score 1352.02 - absdiff 2492.93 percdiff 95.9381 tig 2211 read 339820 pos 5795-13325 IS confused by 3' edge to read 581053 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 2777 erate 0.0432 score 2657.03 - absdiff 1187.92 percdiff 36.5402 tig 2211 read 339820 pos 5795-13325 IS confused by 3' edge to read 605986 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 2785 erate 0.0481 score 2651.04 - absdiff 1193.91 percdiff 36.7584 tig 2211 read 339820 pos 5795-13325 IS confused by 3' edge to read 703242 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 1890 erate 0.0566 score 1783.03 - absdiff 2061.93 percdiff 73.2741 tig 2211 read 339820 pos 5795-13325 NOT confused by 3' edge to read 709264 - best edge read 338205 len 4035 erate 0.0471 score 3844.95 - alt edge len 841 erate 0.0583 score 791.97 - absdiff 3052.98 percdiff 131.6814 saved region 934:16255 - 5 best edges are potentially confused break tig 2211 into up to 2 pieces: 0 434 unique (length 434) 434 16255 repeat (length 15821) Creating Unitig 113534 Creating Unitig 113535 For tig 2211 unique region 0 434 - 0/ 3 reads repeat/unique - unitig 113534 created. For tig 2211 repeat region 434 16255 - 17/ 0 reads repeat/unique - unitig 113535 created. Annotating repeats in reads for tig 2215/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 4957:7094 - contained in read 343173 77- 7094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2224/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:601 - contained in read 352782 0- 6284 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2233/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2234/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2239/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:4737 - contained in read 549564 0- 8889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2240/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2372:3914 - contained in read 377667 0- 6223 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2243/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2260/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2047:2760 - contained in read 58590 445- 3458 discard region 2826:4936 - contained in read 131487 1499- 9342 discard region 10229:11848 - contained in read 462056 5487- 16861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2261/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 8557:7256 - contained in read 62988 876- 16262 discard region 13223:15591 - contained in read 62988 876- 16262 discard region 15985:16599 - contained in read 233619 10789- 18828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2263/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8536:10209 - contained in read 331362 2047- 12879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2264/113047. Annotated with 133 overlaps. Scan reads to discard spanned repeats. discard region 2311:3858 - contained in read 410927 0- 6339 thickest edges to the repeat regions: saved region 4724:6368 - closest read 314243 ( +4712) 12:6368 ( +0) (contained) saved region 4724:6368 - closest read 369469 ( +161) 4563:10223 ( +3855) (contained) saved region 4724:6368 - closest read 344373 ( +118) 4606:10701 ( +4333) (contained) saved region 4724:6368 - closest read 344375 ( +100) 4624:10672 ( +4304) (contained) saved region 4724:6368 - closest read 344374 ( +83) 4641:10649 ( +4281) (contained) saved region 4724:6368 - closest read 259491 ( +0) 4724:11564 ( +5196) (contained) saved region 4724:6368 - closest 5' read 259491 ( +0) 4724:11564 ( +5196) saved region 4724:6368 - closest 3' read 314243 ( +4712) 12:6368 ( +0) search for confused edges: discard region 4724:6368 - no confusion in best edges Annotating repeats in reads for tig 2266/113047. Annotated with 142 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6751:14616 - closest 5' read 526335 ( +2199) 4552:13780 ( -836) saved region 6751:14616 - closest 3' read 180376 ( -1231) 7982:14616 ( +0) search for confused edges: tig 2266 read 437122 pos 4053-13167 IS confused by 5' edge to read 539266 - best edge read 395792 len 4079 erate 0.0292 score 3959.89 - alt edge len 6060 erate 0.0238 score 5915.77 - absdiff 1955.88 percdiff 39.6101 saved region 6751:14616 - 1 best edges are potentially confused break tig 2266 into up to 3 pieces: 0 6251 unique (length 6251) 6251 15116 repeat (length 8865) 15116 24933 unique (length 9817) Creating Unitig 113536 Creating Unitig 113537 Creating Unitig 113538 For tig 2266 unique region 0 6251 - 0/ 10 reads repeat/unique - unitig 113536 created. For tig 2266 repeat region 6251 15116 - 8/ 0 reads repeat/unique - unitig 113537 created. For tig 2266 unique region 15116 24933 - 0/ 17 reads repeat/unique - unitig 113538 created. Annotating repeats in reads for tig 2268/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6544:10721 - contained in read 386723 4102- 12654 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2274/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 1353:5485 - contained in read 711914 764- 7040 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2276/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10758:14676 - closest 5' read 331761 ( +85) 10673:12902 ( -1774) saved region 10758:14676 - closest 3' read 218104 ( -22) 10780:18439 ( +3763) search for confused edges: tig 2276 read 624373 pos 10350-12892 IS confused by 3' edge to read 174197 - best edge read 218104 len 2100 erate 0.0623 score 1969.17 - alt edge len 1124 erate 0.0570 score 1059.93 - absdiff 909.24 percdiff 60.0335 tig 2276 read 624373 pos 10350-12892 IS confused by 3' edge to read 619763 - best edge read 218104 len 2100 erate 0.0623 score 1969.17 - alt edge len 1415 erate 0.0553 score 1336.75 - absdiff 632.42 percdiff 38.2598 saved region 10758:14676 - 2 best edges are potentially confused break tig 2276 into up to 3 pieces: 0 10258 unique (length 10258) 10258 15176 repeat (length 4918) 15176 18439 unique (length 3263) Creating Unitig 113539 Creating Unitig 113540 Creating Unitig 113541 For tig 2276 unique region 0 10258 - 0/ 20 reads repeat/unique - unitig 113539 created. For tig 2276 repeat region 10258 15176 - 13/ 0 reads repeat/unique - unitig 113540 created. For tig 2276 unique region 15176 18439 - 0/ 6 reads repeat/unique - unitig 113541 created. Annotating repeats in reads for tig 2281/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 17336:20063 - contained in read 115392 13453- 20161 thickest edges to the repeat regions: saved region 7327:13317 - closest read 701865 ( +0) 7327:14372 ( +1055) (contained) saved region 7327:13317 - closest 5' read 701865 ( +0) 7327:14372 ( +1055) saved region 7327:13317 - closest 3' read 701865 ( +0) 7327:14372 ( +1055) search for confused edges: discard region 7327:13317 - no confusion in best edges Annotating repeats in reads for tig 2283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2286/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2297/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 16562:18651 - contained in read 553318 8113- 21828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2301/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 25988:23561 - contained in read 456511 17488- 27883 thickest edges to the repeat regions: saved region 17179:18583 - closest read 573689 ( +0) 17179:19415 ( +832) (contained) saved region 17179:18583 - closest 5' read 573689 ( +0) 17179:19415 ( +832) saved region 17179:18583 - closest 3' read 573689 ( +0) 17179:19415 ( +832) search for confused edges: tig 2301 read 512442 pos 10651-18567 IS confused by 5' edge to read 333678 - best edge read 573689 len 1366 erate 0.0176 score 1341.96 - alt edge len 1366 erate 0.0469 score 1301.93 - absdiff 40.02 percdiff 3.0276 tig 2301 read 512442 pos 10651-18567 IS confused by 5' edge to read 362976 - best edge read 573689 len 1366 erate 0.0176 score 1341.96 - alt edge len 646 erate 0.0387 score 621.00 - absdiff 720.96 percdiff 73.4563 tig 2301 read 512442 pos 10651-18567 IS confused by 5' edge to read 461321 - best edge read 573689 len 1366 erate 0.0176 score 1341.96 - alt edge len 1231 erate 0.0236 score 1201.95 - absdiff 140.01 percdiff 11.0075 saved region 17179:18583 - 3 best edges are potentially confused break tig 2301 into up to 3 pieces: 0 16679 unique (length 16679) 16679 19083 repeat (length 2404) 19083 27883 unique (length 8800) Creating Unitig 113542 Creating Unitig 113543 Creating Unitig 113544 For tig 2301 unique region 0 16679 - 0/ 11 reads repeat/unique - unitig 113542 created. For tig 2301 repeat region 16679 19083 - 8/ 0 reads repeat/unique - unitig 113544 created. For tig 2301 unique region 19083 27883 - 0/ 14 reads repeat/unique - unitig 113543 created. Annotating repeats in reads for tig 2304/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7291:17192 - closest read 40220 ( +1187) 6104:17192 ( +0) (contained) saved region 7291:17192 - closest read 168073 ( +43) 7248:17921 ( +729) (contained) saved region 7291:17192 - closest 5' read 168073 ( +43) 7248:17921 ( +729) saved region 7291:17192 - closest 3' read 40220 ( +1187) 6104:17192 ( +0) search for confused edges: discard region 7291:17192 - no confusion in best edges Annotating repeats in reads for tig 2309/113047. Annotated with 352 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8030:13504 - closest 5' read 537892 ( +3285) 4745:13416 ( -88) saved region 8030:13504 - closest 3' read 484106 ( -25) 8055:15761 ( +2257) search for confused edges: tig 2309 read 537892 pos 4745-13416 NOT confused by 3' edge to read 234449 - best edge read 484106 len 5308 erate 0.0711 score 4930.60 - alt edge len 2550 erate 0.0722 score 2365.89 - absdiff 2564.71 percdiff 70.2999 tig 2309 read 537892 pos 4745-13416 NOT confused by 3' edge to read 358669 - best edge read 484106 len 5308 erate 0.0711 score 4930.60 - alt edge len 2536 erate 0.0722 score 2352.90 - absdiff 2577.70 percdiff 70.7819 tig 2309 read 537892 pos 4745-13416 NOT confused by 3' edge to read 366397 - best edge read 484106 len 5308 erate 0.0711 score 4930.60 - alt edge len 2298 erate 0.0648 score 2149.09 - absdiff 2781.51 percdiff 78.5772 tig 2309 read 537892 pos 4745-13416 NOT confused by 3' edge to read 411755 - best edge read 484106 len 5308 erate 0.0711 score 4930.60 - alt edge len 2756 erate 0.0617 score 2585.95 - absdiff 2344.65 percdiff 62.3862 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 127362 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 4304 erate 0.0491 score 4092.67 - absdiff 820.28 percdiff 18.2170 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 234749 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 4516 erate 0.0620 score 4236.01 - absdiff 676.94 percdiff 14.7983 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 344097 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 3743 erate 0.0441 score 3577.93 - absdiff 1335.02 percdiff 31.4459 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 344098 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 4516 erate 0.0437 score 4318.65 - absdiff 594.30 percdiff 12.8754 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 379269 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 4516 erate 0.0337 score 4363.81 - absdiff 549.14 percdiff 11.8391 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 379270 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 4516 erate 0.0388 score 4340.78 - absdiff 572.17 percdiff 12.3663 tig 2309 read 484106 pos 8055-15761 NOT confused by 3' edge to read 542908 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 2505 erate 0.0735 score 2320.88 - absdiff 2592.07 percdiff 71.6652 tig 2309 read 484106 pos 8055-15761 NOT confused by 3' edge to read 542909 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 2507 erate 0.0550 score 2369.11 - absdiff 2543.84 percdiff 69.8658 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 676373 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 3486 erate 0.0508 score 3308.91 - absdiff 1604.04 percdiff 39.0189 tig 2309 read 484106 pos 8055-15761 IS confused by 3' edge to read 676376 - best edge read 537892 len 5289 erate 0.0711 score 4912.95 - alt edge len 3473 erate 0.0498 score 3300.04 - absdiff 1612.91 percdiff 39.2770 saved region 8030:13504 - 8 best edges are potentially confused break tig 2309 into up to 3 pieces: 0 7530 unique (length 7530) 7530 14004 repeat (length 6474) 14004 34104 unique (length 20100) Creating Unitig 113545 Creating Unitig 113546 Creating Unitig 113547 For tig 2309 unique region 0 7530 - 0/ 9 reads repeat/unique - unitig 113545 created. For tig 2309 repeat region 7530 14004 - 30/ 0 reads repeat/unique - unitig 113546 created. For tig 2309 unique region 14004 34104 - 0/ 31 reads repeat/unique - unitig 113547 created. Annotating repeats in reads for tig 2311/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 13286:12638 - contained in read 532809 6883- 17253 thickest edges to the repeat regions: saved region 6579:12405 - closest read 393070 ( +0) 6579:12463 ( +58) (contained) saved region 6579:12405 - closest 5' read 393070 ( +0) 6579:12463 ( +58) saved region 6579:12405 - closest 3' read 393070 ( +0) 6579:12463 ( +58) search for confused edges: tig 2311 read 243572 pos 1631-10844 IS confused by 3' edge to read 175197 - best edge read 532809 len 3897 erate 0.0216 score 3812.82 - alt edge len 3517 erate 0.0378 score 3384.06 - absdiff 428.77 percdiff 11.9154 tig 2311 read 243572 pos 1631-10844 IS confused by 3' edge to read 212279 - best edge read 532809 len 3897 erate 0.0216 score 3812.82 - alt edge len 2721 erate 0.0544 score 2572.98 - absdiff 1239.85 percdiff 38.8314 tig 2311 read 243572 pos 1631-10844 IS confused by 3' edge to read 346902 - best edge read 532809 len 3897 erate 0.0216 score 3812.82 - alt edge len 1890 erate 0.0519 score 1791.91 - absdiff 2020.92 percdiff 72.1146 tig 2311 read 243572 pos 1631-10844 IS confused by 3' edge to read 498078 - best edge read 532809 len 3897 erate 0.0216 score 3812.82 - alt edge len 2126 erate 0.0574 score 2003.97 - absdiff 1808.86 percdiff 62.1943 saved region 6579:12405 - 4 best edges are potentially confused break tig 2311 into up to 3 pieces: 0 6079 unique (length 6079) 6079 12905 repeat (length 6826) 12905 18411 unique (length 5506) Creating Unitig 113548 Creating Unitig 113549 Creating Unitig 113550 For tig 2311 unique region 0 6079 - 0/ 10 reads repeat/unique - unitig 113548 created. For tig 2311 repeat region 6079 12905 - 15/ 0 reads repeat/unique - unitig 113549 created. For tig 2311 unique region 12905 18411 - 0/ 24 reads repeat/unique - unitig 113550 created. Annotating repeats in reads for tig 2320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2321/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8466:12759 - closest read 698650 ( +5202) 3264:13231 ( +472) (contained) saved region 8466:12759 - closest 5' read 698650 ( +5202) 3264:13231 ( +472) saved region 8466:12759 - closest 3' read 698650 ( +5202) 3264:13231 ( +472) search for confused edges: discard region 8466:12759 - no confusion in best edges Annotating repeats in reads for tig 2322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2323/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5853:5334 - contained in read 482384 0- 8825 discard region 6139:7938 - contained in read 482384 0- 8825 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2325/113047. Annotated with 137 overlaps. Scan reads to discard spanned repeats. discard region 27311:28687 - contained in read 629177 22519- 28687 thickest edges to the repeat regions: saved region 16386:19959 - closest 5' read 188658 ( +0) 16386:19829 ( -130) saved region 16386:19959 - closest 3' read 9614 ( -224) 16610:20292 ( +333) search for confused edges: discard region 16386:19959 - no confusion in best edges Annotating repeats in reads for tig 2327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2328/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2776:5248 - contained in read 485842 0- 15940 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2329/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 2490:3873 - contained in read 486021 0- 10623 discard region 25617:26766 - contained in read 537463 20397- 29555 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2331/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2333/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2344/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 19776:20880 - contained in read 173500 9949- 21653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2345/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13549:11446 - contained in read 295205 6588- 13672 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2347/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 11540:16008 - contained in read 29268 10323- 17805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2357/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2766:6620 - contained in read 559085 0- 9867 discard region 8348:9265 - contained in read 559085 0- 9867 discard region 9287:12004 - contained in read 452141 3122- 12099 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2362/113047. Annotated with 103 overlaps. Scan reads to discard spanned repeats. discard region 16089:18663 - contained in read 512052 12664- 19262 thickest edges to the repeat regions: saved region 1888:6080 - closest read 492863 ( +0) 1888:6662 ( +582) (contained) saved region 1888:6080 - closest 5' read 492863 ( +0) 1888:6662 ( +582) saved region 1888:6080 - closest 3' read 492863 ( +0) 1888:6662 ( +582) saved region 7173:15505 - closest 5' read 541847 ( +2077) 5096:14164 ( -1341) saved region 7173:15505 - closest 3' read 243843 ( -5452) 12625:17353 ( +1848) search for confused edges: tig 2362 read 512052 pos 12664-19262 IS confused by 5' edge to read 444214 - best edge read 541847 len 1490 erate 0.0114 score 1473.01 - alt edge len 922 erate 0.0065 score 916.01 - absdiff 557.01 percdiff 46.6306 tig 2362 read 512052 pos 12664-19262 IS confused by 5' edge to read 641970 - best edge read 541847 len 1490 erate 0.0114 score 1473.01 - alt edge len 703 erate 0.0367 score 677.20 - absdiff 795.81 percdiff 74.0219 discard region 1888:6080 - no confusion in best edges saved region 7173:15505 - 2 best edges are potentially confused break tig 2362 into up to 3 pieces: 0 6673 unique (length 6673) 6673 16005 repeat (length 9332) 16005 29758 unique (length 13753) Creating Unitig 113551 Creating Unitig 113552 Creating Unitig 113553 For tig 2362 unique region 0 6673 - 0/ 16 reads repeat/unique - unitig 113551 created. For tig 2362 repeat region 6673 16005 - 2/ 0 reads repeat/unique - unitig 113552 created. For tig 2362 unique region 16005 29758 - 0/ 14 reads repeat/unique - unitig 113553 created. Annotating repeats in reads for tig 2367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2370/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11863:13979 - closest read 710935 ( +0) 11863:16464 ( +2485) (contained) saved region 11863:13979 - closest 5' read 710935 ( +0) 11863:16464 ( +2485) saved region 11863:13979 - closest 3' read 710935 ( +0) 11863:16464 ( +2485) search for confused edges: tig 2370 read 59327 pos 6525-12814 IS confused by 5' edge to read 591265 - best edge read 710935 len 947 erate 0.0603 score 889.90 - alt edge len 830 erate 0.0724 score 769.91 - absdiff 119.99 percdiff 14.4581 saved region 11863:13979 - 1 best edges are potentially confused break tig 2370 into up to 3 pieces: 0 11363 unique (length 11363) 11363 14479 repeat (length 3116) 14479 18842 unique (length 4363) Creating Unitig 113554 Creating Unitig 113555 For tig 2370 unique region 0 11363 - 0/ 26 reads repeat/unique - unitig 113554 created. For tig 2370 repeat region 11363 14479 - 0/ 0 repeat/unique reads - no new unitig created. For tig 2370 unique region 14479 18842 - 0/ 10 reads repeat/unique - unitig 113555 created. Annotating repeats in reads for tig 2375/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 349:4532 - closest read 194476 ( +349) 0:4532 ( +0) (contained) saved region 349:4532 - closest 5' read 194476 ( +349) 0:4532 ( +0) saved region 349:4532 - closest 3' read 194476 ( +349) 0:4532 ( +0) saved region 12257:13223 - closest read 651901 (+11796) 461:13287 ( +64) (contained) saved region 12257:13223 - closest read 651902 (+11789) 468:13284 ( +61) (contained) saved region 12257:13223 - closest read 651900 (+11747) 510:13281 ( +58) (contained) saved region 12257:13223 - closest read 146344 ( +0) 12257:16562 ( +3339) (contained) saved region 12257:13223 - closest 5' read 146344 ( +0) 12257:16562 ( +3339) saved region 12257:13223 - closest 3' read 651901 (+11796) 461:13287 ( +64) saved region 15582:19854 - closest read 556842 ( +2087) 13495:20131 ( +277) (contained) saved region 15582:19854 - closest read 526859 ( +0) 15582:20421 ( +567) (contained) saved region 15582:19854 - closest 5' read 526859 ( +0) 15582:20421 ( +567) saved region 15582:19854 - closest 3' read 556842 ( +2087) 13495:20131 ( +277) search for confused edges: tig 2375 read 651902 pos 468-13284 IS confused by 5' edge to read 95147 - best edge read 194476 len 4055 erate 0.0552 score 3831.16 - alt edge len 2612 erate 0.0499 score 2481.66 - absdiff 1349.50 percdiff 42.7543 tig 2375 read 651902 pos 468-13284 NOT confused by 5' edge to read 139500 - best edge read 194476 len 4055 erate 0.0552 score 3831.16 - alt edge len 1164 erate 0.0617 score 1092.18 - absdiff 2738.98 percdiff 111.2651 tig 2375 read 651902 pos 468-13284 IS confused by 5' edge to read 672016 - best edge read 194476 len 4055 erate 0.0552 score 3831.16 - alt edge len 2122 erate 0.0510 score 2013.78 - absdiff 1817.39 percdiff 62.1866 saved region 349:4532 - 2 best edges are potentially confused discard region 12257:13223 - no confusion in best edges discard region 15582:19854 - no confusion in best edges break tig 2375 into up to 2 pieces: 0 5032 repeat (length 5032) 5032 20421 unique (length 15389) Creating Unitig 113556 Creating Unitig 113557 For tig 2375 repeat region 0 5032 - 2/ 0 reads repeat/unique - unitig 113556 created. For tig 2375 unique region 5032 20421 - 0/ 22 reads repeat/unique - unitig 113557 created. Annotating repeats in reads for tig 2384/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 12675:11839 - contained in read 127846 6672- 13843 discard region 14069:13164 - contained in read 127846 6672- 13843 discard region 17086:19619 - contained in read 20015 14026- 20194 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2391/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19266:27787 - closest 5' read 80307 ( +2483) 16783:23415 ( -4372) saved region 19266:27787 - closest 3' read 167968 ( -564) 19830:27787 ( +0) search for confused edges: discard region 19266:27787 - no confusion in best edges Annotating repeats in reads for tig 2392/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 3540:7203 - contained in read 60396 702- 7203 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2393/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 13379:17493 - contained in read 487738 10945- 18248 discard region 18422:19575 - contained in read 317458 16323- 20157 discard region 19649:22755 - contained in read 467619 17793- 25343 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2396/113047. Annotated with 740 overlaps. Scan reads to discard spanned repeats. discard region 7124:12628 - contained in read 515873 3233- 19220 discard region 12709:19921 - contained in read 706567 12084- 23840 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2402/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2419/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6011:4893 - contained in read 570360 0- 8604 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2426/113047. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 4215:4972 - contained in read 578001 0- 6792 discard region 9095:14240 - contained in read 553532 8592- 14240 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2428/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3217:8062 - contained in read 578436 0- 9498 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2444/113047. Annotated with 107 overlaps. Scan reads to discard spanned repeats. discard region 12186:10934 - contained in read 129267 6441- 12729 discard region 16290:19361 - contained in read 483299 8494- 19361 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2445/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 10534:13501 - contained in read 601019 9523- 15273 discard region 16176:18666 - contained in read 400822 13330- 18937 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2447/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12559:17624 - closest read 528531 ( +927) 11632:17899 ( +275) (contained) saved region 12559:17624 - closest read 394119 ( +420) 12139:20515 ( +2891) (contained) saved region 12559:17624 - closest read 75440 ( +0) 12559:18135 ( +511) (contained) saved region 12559:17624 - closest 5' read 394119 ( +420) 12139:20515 ( +2891) saved region 12559:17624 - closest 3' read 528531 ( +927) 11632:17899 ( +275) search for confused edges: discard region 12559:17624 - no confusion in best edges Annotating repeats in reads for tig 2451/113047. Annotated with 90 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12767:19698 - closest 5' read 628160 ( +1809) 10958:18073 ( -1625) saved region 12767:19698 - closest 3' read 400212 ( -454) 13221:21574 ( +1876) search for confused edges: tig 2451 read 497355 pos 12784-18880 IS confused by 3' edge to read 17804 - best edge read 400212 len 5578 erate 0.0282 score 5420.70 - alt edge len 3495 erate 0.0309 score 3387.00 - absdiff 2033.70 percdiff 46.1799 tig 2451 read 497355 pos 12784-18880 NOT confused by 3' edge to read 323126 - best edge read 400212 len 5578 erate 0.0282 score 5420.70 - alt edge len 2726 erate 0.0481 score 2594.88 - absdiff 2825.82 percdiff 70.5082 tig 2451 read 497355 pos 12784-18880 NOT confused by 3' edge to read 612529 - best edge read 400212 len 5578 erate 0.0282 score 5420.70 - alt edge len 3025 erate 0.0393 score 2906.12 - absdiff 2514.58 percdiff 60.3972 tig 2451 read 497355 pos 12784-18880 NOT confused by 3' edge to read 612531 - best edge read 400212 len 5578 erate 0.0282 score 5420.70 - alt edge len 3027 erate 0.0406 score 2904.10 - absdiff 2516.60 percdiff 60.4602 tig 2451 read 497355 pos 12784-18880 IS confused by 3' edge to read 675529 - best edge read 400212 len 5578 erate 0.0282 score 5420.70 - alt edge len 4296 erate 0.0635 score 4023.20 - absdiff 1397.50 percdiff 29.5957 saved region 12767:19698 - 2 best edges are potentially confused break tig 2451 into up to 3 pieces: 0 12267 unique (length 12267) 12267 20198 repeat (length 7931) 20198 28996 unique (length 8798) Creating Unitig 113558 Creating Unitig 113559 Creating Unitig 113560 For tig 2451 unique region 0 12267 - 0/ 12 reads repeat/unique - unitig 113558 created. For tig 2451 repeat region 12267 20198 - 57/ 0 reads repeat/unique - unitig 113559 created. For tig 2451 unique region 20198 28996 - 0/ 7 reads repeat/unique - unitig 113560 created. Annotating repeats in reads for tig 2455/113047. Annotated with 2304 overlaps. Scan reads to discard spanned repeats. discard region 6674:5802 - contained in read 258802 4- 6674 discard region 6681:6081 - contained in read 258802 4- 6674 thickest edges to the repeat regions: saved region 8035:19771 - closest 5' read 697590 ( +187) 7848:14616 ( -5155) saved region 8035:19771 - closest 3' read 608475 ( -3349) 11384:19771 ( +0) search for confused edges: tig 2455 read 597478 pos 6892-12922 IS confused by 3' edge to read 38399 - best edge read 697592 len 2822 erate 0.0681 score 2629.82 - alt edge len 2269 erate 0.0617 score 2129.00 - absdiff 500.82 percdiff 21.0480 tig 2455 read 597478 pos 6892-12922 IS confused by 3' edge to read 71313 - best edge read 697592 len 2822 erate 0.0681 score 2629.82 - alt edge len 999 erate 0.0560 score 943.06 - absdiff 1686.77 percdiff 94.4206 tig 2455 read 597478 pos 6892-12922 IS confused by 3' edge to read 177496 - best edge read 697592 len 2822 erate 0.0681 score 2629.82 - alt edge len 578 erate 0.0557 score 545.81 - absdiff 2084.02 percdiff 131.2507 tig 2455 read 597478 pos 6892-12922 IS confused by 3' edge to read 177497 - best edge read 697592 len 2822 erate 0.0681 score 2629.82 - alt edge len 574 erate 0.0683 score 534.80 - absdiff 2095.03 percdiff 132.4031 tig 2455 read 597478 pos 6892-12922 IS confused by 3' edge to read 177498 - best edge read 697592 len 2822 erate 0.0681 score 2629.82 - alt edge len 576 erate 0.0614 score 540.63 - absdiff 2089.19 percdiff 131.7910 tig 2455 read 597478 pos 6892-12922 IS confused by 3' edge to read 245756 - best edge read 697592 len 2822 erate 0.0681 score 2629.82 - alt edge len 2218 erate 0.0637 score 2076.71 - absdiff 553.11 percdiff 23.5038 tig 2455 read 641325 pos 10612-17620 NOT confused by 5' edge to read 412480 - best edge read 540704 len 4679 erate 0.0620 score 4388.90 - alt edge len 2010 erate 0.0479 score 1913.72 - absdiff 2475.18 percdiff 78.5445 tig 2455 read 641325 pos 10612-17620 IS confused by 5' edge to read 554187 - best edge read 540704 len 4679 erate 0.0620 score 4388.90 - alt edge len 2689 erate 0.0384 score 2585.74 - absdiff 1803.16 percdiff 51.7061 tig 2455 read 641325 pos 10612-17620 IS confused by 5' edge to read 611814 - best edge read 540704 len 4679 erate 0.0620 score 4388.90 - alt edge len 3753 erate 0.0564 score 3541.33 - absdiff 847.57 percdiff 21.3757 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 16358 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 2597 erate 0.0250 score 2532.07 - absdiff 5637.94 percdiff 105.3615 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 56472 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 1100 erate 0.0503 score 1044.67 - absdiff 7125.35 percdiff 154.6520 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 56473 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 656 erate 0.0534 score 620.97 - absdiff 7549.05 percdiff 171.7452 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 69514 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 2299 erate 0.0161 score 2261.99 - absdiff 5908.03 percdiff 113.2674 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 73835 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3013 erate 0.0398 score 2893.08 - absdiff 5276.93 percdiff 95.3970 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 75365 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 1354 erate 0.0496 score 1286.84 - absdiff 6883.17 percdiff 145.5700 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 75366 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 1345 erate 0.0483 score 1280.04 - absdiff 6889.98 percdiff 145.8189 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 86124 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 2788 erate 0.0363 score 2686.80 - absdiff 5483.22 percdiff 101.0098 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 125239 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 589 erate 0.0448 score 562.61 - absdiff 7607.40 percdiff 174.2294 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 137335 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3246 erate 0.0496 score 3085.00 - absdiff 5085.02 percdiff 90.3600 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 201858 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3169 erate 0.0521 score 3003.90 - absdiff 5166.12 percdiff 92.4676 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 212668 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 1894 erate 0.0528 score 1794.00 - absdiff 6376.02 percdiff 127.9810 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 293555 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3114 erate 0.0674 score 2904.12 - absdiff 5265.90 percdiff 95.1027 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 448578 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3202 erate 0.0656 score 2991.95 - absdiff 5178.07 percdiff 92.7806 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 478039 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 2323 erate 0.0380 score 2234.73 - absdiff 5935.29 percdiff 114.0882 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 532060 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3268 erate 0.0489 score 3108.19 - absdiff 5061.82 percdiff 89.7628 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 545260 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 1757 erate 0.0268 score 1709.91 - absdiff 6460.10 percdiff 130.7723 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 545264 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 1737 erate 0.0271 score 1689.93 - absdiff 6480.09 percdiff 131.4427 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 546407 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 3290 erate 0.0423 score 3150.83 - absdiff 5019.18 percdiff 88.6715 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 556591 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 2624 erate 0.0233 score 2562.86 - absdiff 5607.16 percdiff 104.4856 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 563049 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 619 erate 0.0444 score 591.52 - absdiff 7578.50 percdiff 172.9948 tig 2455 read 608476 pos 11283-19732 NOT confused by 5' edge to read 628000 - best edge read 608472 len 8313 erate 0.0172 score 8170.02 - alt edge len 2243 erate 0.0196 score 2199.04 - absdiff 5970.98 percdiff 115.1692 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 16358 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 2599 erate 0.0246 score 2535.06 - absdiff 587.87 percdiff 20.7801 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 56472 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1099 erate 0.0492 score 1044.93 - absdiff 2078.01 percdiff 99.7156 tig 2455 read 608472 pos 11293-19720 NOT confused by 5' edge to read 56473 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 655 erate 0.0473 score 624.02 - absdiff 2498.92 percdiff 133.3839 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 69514 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 2300 erate 0.0170 score 2260.90 - absdiff 862.03 percdiff 32.0231 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 73835 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3016 erate 0.0391 score 2898.07 - absdiff 224.86 percdiff 7.4692 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 75365 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1353 erate 0.0488 score 1286.97 - absdiff 1835.96 percdiff 83.2653 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 75366 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1344 erate 0.0474 score 1280.29 - absdiff 1842.64 percdiff 83.6950 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 86124 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 2791 erate 0.0363 score 2689.69 - absdiff 433.25 percdiff 14.9072 tig 2455 read 608472 pos 11293-19720 NOT confused by 5' edge to read 125239 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 588 erate 0.0359 score 566.89 - absdiff 2556.04 percdiff 138.5455 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 137335 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3245 erate 0.0480 score 3089.24 - absdiff 33.69 percdiff 1.0848 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 201858 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3171 erate 0.0514 score 3008.01 - absdiff 114.92 percdiff 3.7490 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 212668 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1895 erate 0.0522 score 1796.08 - absdiff 1326.85 percdiff 53.9479 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 293555 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3116 erate 0.0668 score 2907.85 - absdiff 215.08 percdiff 7.1329 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 298926 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1168 erate 0.0499 score 1109.72 - absdiff 2013.22 percdiff 95.1280 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 448578 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3202 erate 0.0646 score 2995.15 - absdiff 127.78 percdiff 4.1773 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 478039 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 2324 erate 0.0353 score 2241.96 - absdiff 880.97 percdiff 32.8421 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 532060 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3265 erate 0.0479 score 3108.61 - absdiff 14.33 percdiff 0.4599 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 545260 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1754 erate 0.0268 score 1706.99 - absdiff 1415.94 percdiff 58.6320 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 545264 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 1734 erate 0.0265 score 1688.05 - absdiff 1434.89 percdiff 59.6504 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 546407 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 3288 erate 0.0423 score 3148.92 - absdiff 25.98 percdiff 0.8285 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 556591 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 2626 erate 0.0248 score 2560.88 - absdiff 562.06 percdiff 19.7776 tig 2455 read 608472 pos 11293-19720 NOT confused by 5' edge to read 563049 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 618 erate 0.0408 score 592.79 - absdiff 2530.15 percdiff 136.1862 tig 2455 read 608472 pos 11293-19720 NOT confused by 5' edge to read 576860 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 736 erate 0.0299 score 713.99 - absdiff 2408.94 percdiff 125.5661 tig 2455 read 608472 pos 11293-19720 IS confused by 5' edge to read 628000 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 2244 erate 0.0205 score 2198.00 - absdiff 924.94 percdiff 34.7660 tig 2455 read 608472 pos 11293-19720 NOT confused by 5' edge to read 643871 - best edge read 697592 len 3329 erate 0.0619 score 3122.93 - alt edge len 608 erate 0.0419 score 582.52 - absdiff 2540.41 percdiff 137.1171 tig 2455 read 540707 pos 12091-18271 NOT confused by 5' edge to read 69514 - best edge read 540704 len 6059 erate 0.0357 score 5842.69 - alt edge len 3284 erate 0.0710 score 3050.84 - absdiff 2791.86 percdiff 62.7840 tig 2455 read 540704 pos 12114-18308 IS confused by 3' edge to read 69514 - best edge read 641325 len 4637 erate 0.0620 score 4349.51 - alt edge len 3293 erate 0.0599 score 3095.75 - absdiff 1253.76 percdiff 33.6793 tig 2455 read 540704 pos 12114-18308 IS confused by 3' edge to read 545260 - best edge read 641325 len 4637 erate 0.0620 score 4349.51 - alt edge len 2730 erate 0.0678 score 2544.91 - absdiff 1804.60 percdiff 52.3496 tig 2455 read 540704 pos 12114-18308 IS confused by 3' edge to read 545264 - best edge read 641325 len 4637 erate 0.0620 score 4349.51 - alt edge len 2710 erate 0.0679 score 2525.99 - absdiff 1823.51 percdiff 53.0439 saved region 8035:19771 - 31 best edges are potentially confused break tig 2455 into up to 2 pieces: 0 7535 unique (length 7535) 7535 19771 repeat (length 12236) Creating Unitig 113561 Creating Unitig 113562 For tig 2455 unique region 0 7535 - 0/ 15 reads repeat/unique - unitig 113561 created. For tig 2455 repeat region 7535 19771 - 175/ 0 reads repeat/unique - unitig 113562 created. Annotating repeats in reads for tig 2457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2458/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2459/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 7716:13511 - contained in read 578892 2938- 15427 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2461/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 7546:11927 - contained in read 598034 941- 11927 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2470/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2486/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 15350:16596 - contained in read 118677 11622- 17098 thickest edges to the repeat regions: saved region 7196:12523 - closest read 564819 ( +5720) 1476:12523 ( +0) (contained) saved region 7196:12523 - closest 5' read 564819 ( +5720) 1476:12523 ( +0) saved region 7196:12523 - closest 3' read 564819 ( +5720) 1476:12523 ( +0) search for confused edges: discard region 7196:12523 - no confusion in best edges Annotating repeats in reads for tig 2490/113047. Annotated with 121 overlaps. Scan reads to discard spanned repeats. discard region 5054:6957 - contained in read 48962 29- 10348 thickest edges to the repeat regions: saved region 7865:19865 - closest 5' read 174795 ( +2024) 5841:12830 ( -7035) saved region 7865:19865 - closest 3' read 552239 ( -4035) 11900:19997 ( +132) saved region 26004:30086 - closest read 643393 ( +0) 26004:33543 ( +3457) (contained) saved region 26004:30086 - closest 5' read 643393 ( +0) 26004:33543 ( +3457) saved region 26004:30086 - closest 3' read 643393 ( +0) 26004:33543 ( +3457) search for confused edges: discard region 7865:19865 - no confusion in best edges discard region 26004:30086 - no confusion in best edges Annotating repeats in reads for tig 2504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2522/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10267:9432 - contained in read 17540 7002- 13457 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2523/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3720:8868 - closest 5' read 719225 ( +3594) 126:7035 ( -1833) saved region 3720:8868 - closest 3' read 426871 ( -1826) 5546:12372 ( +3504) search for confused edges: tig 2523 read 426871 pos 5546-12372 IS confused by 3' edge to read 21075 - best edge read 719225 len 1480 erate 0.0549 score 1398.75 - alt edge len 1349 erate 0.0469 score 1285.73 - absdiff 113.02 percdiff 8.4200 tig 2523 read 426871 pos 5546-12372 IS confused by 3' edge to read 21077 - best edge read 719225 len 1480 erate 0.0549 score 1398.75 - alt edge len 1313 erate 0.0452 score 1253.65 - absdiff 145.10 percdiff 10.9407 saved region 3720:8868 - 2 best edges are potentially confused break tig 2523 into up to 3 pieces: 0 3220 unique (length 3220) 3220 9368 repeat (length 6148) 9368 27425 unique (length 18057) Creating Unitig 113563 Creating Unitig 113564 Creating Unitig 113565 For tig 2523 unique region 0 3220 - 0/ 2 reads repeat/unique - unitig 113563 created. For tig 2523 repeat region 3220 9368 - 4/ 0 reads repeat/unique - unitig 113564 created. For tig 2523 unique region 9368 27425 - 0/ 21 reads repeat/unique - unitig 113565 created. Annotating repeats in reads for tig 2531/113047. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 1228:8062 - contained in read 707897 0- 8709 discard region 9626:13362 - contained in read 322127 1228- 13362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2533/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9267:10418 - closest read 384848 ( +8034) 1233:10418 ( +0) (contained) saved region 9267:10418 - closest read 588053 ( +0) 9267:20580 (+10162) (contained) saved region 9267:10418 - closest 5' read 588053 ( +0) 9267:20580 (+10162) saved region 9267:10418 - closest 3' read 384848 ( +8034) 1233:10418 ( +0) search for confused edges: discard region 9267:10418 - no confusion in best edges Annotating repeats in reads for tig 2534/113047. Annotated with 172 overlaps. Scan reads to discard spanned repeats. discard region 14554:21219 - contained in read 513091 13586- 21219 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2541/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 22262:20454 - contained in read 467918 18091- 24398 thickest edges to the repeat regions: saved region 11456:16464 - closest 5' read 583563 ( +1407) 10049:15240 ( -1224) saved region 11456:16464 - closest 3' read 188287 ( -2726) 14182:19664 ( +3200) search for confused edges: discard region 11456:16464 - no confusion in best edges Annotating repeats in reads for tig 2543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2546/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4577:5213 - contained in read 328597 747- 7696 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2549/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 19626:20948 - contained in read 489454 18436- 23181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2552/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7397:8617 - contained in read 526184 3534- 18121 discard region 10613:12292 - contained in read 526184 3534- 18121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2553/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2555/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 1067:3053 - contained in read 128695 0- 7939 discard region 9408:10929 - contained in read 528138 5709- 12442 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2558/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 7205:12856 - contained in read 428455 4241- 12856 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2563/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15101:16271 - contained in read 552053 8608- 18743 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2565/113047. Annotated with 617 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4169:6936 - closest 5' read 218355 ( +4066) 103:6785 ( -151) saved region 4169:6936 - closest 3' read 193223 ( -728) 4897:12609 ( +5673) saved region 9471:19234 - closest read 223551 ( +0) 9471:24645 ( +5411) (contained) saved region 9471:19234 - closest 5' read 223551 ( +0) 9471:24645 ( +5411) saved region 9471:19234 - closest 3' read 223551 ( +0) 9471:24645 ( +5411) search for confused edges: tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 238313 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 646 erate 0.0512 score 612.92 - absdiff 508.08 percdiff 58.6043 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 259113 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 1175 erate 0.0723 score 1090.05 - absdiff 30.96 percdiff 2.8001 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 336357 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 723 erate 0.0540 score 683.96 - absdiff 437.04 percdiff 48.4271 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 599347 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 1062 erate 0.0575 score 1000.94 - absdiff 120.07 percdiff 11.3168 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 599349 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 1061 erate 0.0618 score 995.43 - absdiff 125.57 percdiff 11.8664 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 608472 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 613 erate 0.0408 score 587.99 - absdiff 533.01 percdiff 62.3775 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 608476 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 609 erate 0.0444 score 581.96 - absdiff 539.04 percdiff 63.3064 tig 2565 read 563049 pos 5591-13242 IS confused by 3' edge to read 643871 - best edge read 218355 len 1187 erate 0.0556 score 1121.00 - alt edge len 1093 erate 0.0559 score 1031.90 - absdiff 89.10 percdiff 8.2773 tig 2565 read 607104 pos 6749-15823 IS confused by 5' edge to read 16958 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 4096 erate 0.0173 score 4025.14 - absdiff 1685.02 percdiff 34.6168 tig 2565 read 607104 pos 6749-15823 IS confused by 5' edge to read 123405 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 4161 erate 0.0289 score 4040.75 - absdiff 1669.41 percdiff 34.2412 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 261239 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 1998 erate 0.0312 score 1935.66 - absdiff 3774.50 percdiff 98.7336 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 269799 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 1173 erate 0.0290 score 1138.98 - absdiff 4571.18 percdiff 133.4817 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 315589 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 2414 erate 0.0435 score 2308.99 - absdiff 3401.17 percdiff 84.8262 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 315592 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 2422 erate 0.0227 score 2367.02 - absdiff 3343.14 percdiff 82.7799 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 355411 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 2654 erate 0.0136 score 2617.91 - absdiff 3092.26 percdiff 74.2611 tig 2565 read 607104 pos 6749-15823 IS confused by 5' edge to read 591002 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 3957 erate 0.0228 score 3866.78 - absdiff 1843.38 percdiff 38.4962 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 629869 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 1963 erate 0.0280 score 1908.04 - absdiff 3802.13 percdiff 99.8169 tig 2565 read 607104 pos 6749-15823 NOT confused by 5' edge to read 632974 - best edge read 223551 len 6136 erate 0.0694 score 5710.16 - alt edge len 748 erate 0.0377 score 719.80 - absdiff 4990.36 percdiff 155.2221 saved region 4169:6936 - 8 best edges are potentially confused saved region 9471:19234 - 3 best edges are potentially confused break tig 2565 into up to 5 pieces: 0 3669 unique (length 3669) 3669 7436 repeat (length 3767) 7436 8971 unique (length 1535) 8971 19734 repeat (length 10763) 19734 28987 unique (length 9253) Creating Unitig 113566 Creating Unitig 113567 Creating Unitig 113568 Creating Unitig 113569 For tig 2565 unique region 0 3669 - 0/ 2 reads repeat/unique - unitig 113566 created. For tig 2565 repeat region 3669 7436 - 0/ 0 repeat/unique reads - no new unitig created. For tig 2565 unique region 7436 8971 - 0/ 10 reads repeat/unique - unitig 113567 created. For tig 2565 repeat region 8971 19734 - 32/ 0 reads repeat/unique - unitig 113569 created. For tig 2565 unique region 19734 28987 - 0/ 8 reads repeat/unique - unitig 113568 created. Annotating repeats in reads for tig 2567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2570/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13665:17956 - closest 5' read 39112 ( +6412) 7253:16379 ( -1577) saved region 13665:17956 - closest 3' read 568498 ( -852) 14517:22437 ( +4481) search for confused edges: discard region 13665:17956 - no confusion in best edges Annotating repeats in reads for tig 2571/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4247:3668 - contained in read 528998 0- 6757 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2574/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2580/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 742:1663 - contained in read 119329 0- 7444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2585/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1492:6192 - closest read 288488 ( +1125) 367:6192 ( +0) (contained) saved region 1492:6192 - closest 5' read 288488 ( +1125) 367:6192 ( +0) saved region 1492:6192 - closest 3' read 288488 ( +1125) 367:6192 ( +0) saved region 6723:12515 - closest 5' read 84370 ( +0) 6723:11487 ( -1028) saved region 6723:12515 - closest 3' read 716980 ( -7) 6730:14553 ( +2038) search for confused edges: tig 2585 read 35046 pos 3748-10435 IS confused by 3' edge to read 659609 - best edge read 716980 len 3684 erate 0.0258 score 3588.95 - alt edge len 3682 erate 0.0265 score 3584.43 - absdiff 4.53 percdiff 0.1262 discard region 1492:6192 - no confusion in best edges saved region 6723:12515 - 1 best edges are potentially confused break tig 2585 into up to 3 pieces: 0 6223 unique (length 6223) 6223 13015 repeat (length 6792) 13015 17439 unique (length 4424) Creating Unitig 113570 Creating Unitig 113571 Creating Unitig 113572 For tig 2585 unique region 0 6223 - 0/ 10 reads repeat/unique - unitig 113570 created. For tig 2585 repeat region 6223 13015 - 4/ 0 reads repeat/unique - unitig 113571 created. For tig 2585 unique region 13015 17439 - 0/ 14 reads repeat/unique - unitig 113572 created. Annotating repeats in reads for tig 2588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2591/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 6573:9284 - contained in read 49935 2933- 9795 thickest edges to the repeat regions: saved region 11954:17572 - closest read 477200 ( +5916) 6038:17747 ( +175) (contained) saved region 11954:17572 - closest read 516544 ( +1617) 10337:17757 ( +185) (contained) saved region 11954:17572 - closest 5' read 516544 ( +1617) 10337:17757 ( +185) saved region 11954:17572 - closest 3' read 477200 ( +5916) 6038:17747 ( +175) search for confused edges: discard region 11954:17572 - no confusion in best edges Annotating repeats in reads for tig 2593/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1005:0 - contained in read 201015 0- 4275 discard region 4320:2811 - contained in read 201015 0- 4275 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2594/113047. Annotated with 187 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7813:12466 - closest 5' read 20945 ( +3238) 4575:11626 ( -840) saved region 7813:12466 - closest 3' read 337893 ( -1088) 8901:14613 ( +2147) search for confused edges: tig 2594 read 337893 pos 8901-14613 IS confused by 5' edge to read 45793 - best edge read 20945 len 2691 erate 0.0664 score 2512.32 - alt edge len 1751 erate 0.0550 score 1654.69 - absdiff 857.62 percdiff 41.1625 tig 2594 read 337893 pos 8901-14613 IS confused by 5' edge to read 161384 - best edge read 20945 len 2691 erate 0.0664 score 2512.32 - alt edge len 2624 erate 0.0617 score 2462.10 - absdiff 50.22 percdiff 2.0191 tig 2594 read 337893 pos 8901-14613 IS confused by 5' edge to read 185653 - best edge read 20945 len 2691 erate 0.0664 score 2512.32 - alt edge len 671 erate 0.0506 score 637.05 - absdiff 1875.27 percdiff 119.0888 saved region 7813:12466 - 3 best edges are potentially confused break tig 2594 into up to 3 pieces: 0 7313 unique (length 7313) 7313 12966 repeat (length 5653) 12966 14819 unique (length 1853) Creating Unitig 113573 Creating Unitig 113574 Creating Unitig 113575 For tig 2594 unique region 0 7313 - 0/ 8 reads repeat/unique - unitig 113573 created. For tig 2594 repeat region 7313 12966 - 6/ 0 reads repeat/unique - unitig 113574 created. For tig 2594 unique region 12966 14819 - 0/ 7 reads repeat/unique - unitig 113575 created. Annotating repeats in reads for tig 2595/113047. Annotated with 170 overlaps. Scan reads to discard spanned repeats. discard region 0:1123 - contained in read 39128 0- 7748 thickest edges to the repeat regions: saved region 2699:13157 - closest 5' read 39128 ( +2699) 0:7748 ( -5409) saved region 2699:13157 - closest 3' read 579786 ( -2583) 5282:13157 ( +0) search for confused edges: tig 2595 read 39128 pos 0-7748 IS confused by 3' edge to read 283236 - best edge read 579786 len 2473 erate 0.0593 score 2326.35 - alt edge len 1418 erate 0.0397 score 1361.71 - absdiff 964.65 percdiff 52.3119 tig 2595 read 39128 pos 0-7748 IS confused by 3' edge to read 283237 - best edge read 579786 len 2473 erate 0.0593 score 2326.35 - alt edge len 817 erate 0.0566 score 770.76 - absdiff 1555.59 percdiff 100.4545 tig 2595 read 39128 pos 0-7748 IS confused by 3' edge to read 578688 - best edge read 579786 len 2473 erate 0.0593 score 2326.35 - alt edge len 510 erate 0.0588 score 480.01 - absdiff 1846.34 percdiff 131.5823 tig 2595 read 39128 pos 0-7748 IS confused by 3' edge to read 578689 - best edge read 579786 len 2473 erate 0.0593 score 2326.35 - alt edge len 511 erate 0.0528 score 484.02 - absdiff 1842.33 percdiff 131.1095 saved region 2699:13157 - 4 best edges are potentially confused break tig 2595 into up to 2 pieces: 0 2199 unique (length 2199) 2199 13157 repeat (length 10958) Creating Unitig 113576 Creating Unitig 113577 For tig 2595 unique region 0 2199 - 0/ 8 reads repeat/unique - unitig 113576 created. For tig 2595 repeat region 2199 13157 - 14/ 0 reads repeat/unique - unitig 113577 created. Annotating repeats in reads for tig 2596/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2600/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2605/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12898:13767 - closest 5' read 16461 ( +167) 12731:13743 ( -24) saved region 12898:13767 - closest 3' read 576326 ( -193) 13091:25203 (+11436) search for confused edges: tig 2605 read 16461 pos 12731-13743 IS confused by 5' edge to read 383125 - best edge read 576328 len 651 erate 0.0346 score 628.48 - alt edge len 582 erate 0.0490 score 553.48 - absdiff 74.99 percdiff 12.6897 tig 2605 read 16461 pos 12731-13743 IS confused by 5' edge to read 677545 - best edge read 576328 len 651 erate 0.0346 score 628.48 - alt edge len 557 erate 0.0516 score 528.26 - absdiff 100.22 percdiff 17.3275 tig 2605 read 16461 pos 12731-13743 IS confused by 5' edge to read 677546 - best edge read 576328 len 651 erate 0.0346 score 628.48 - alt edge len 555 erate 0.0519 score 526.20 - absdiff 102.28 percdiff 17.7159 tig 2605 read 576328 pos 13098-22579 IS confused by 5' edge to read 105970 - best edge read 16461 len 646 erate 0.0346 score 623.65 - alt edge len 529 erate 0.0477 score 503.77 - absdiff 119.88 percdiff 21.2666 tig 2605 read 576328 pos 13098-22579 IS confused by 5' edge to read 203939 - best edge read 16461 len 646 erate 0.0346 score 623.65 - alt edge len 632 erate 0.0634 score 591.93 - absdiff 31.72 percdiff 5.2184 saved region 12898:13767 - 5 best edges are potentially confused break tig 2605 into up to 3 pieces: 0 12398 unique (length 12398) 12398 14267 repeat (length 1869) 14267 28013 unique (length 13746) Creating Unitig 113578 Creating Unitig 113579 Creating Unitig 113580 For tig 2605 unique region 0 12398 - 0/ 8 reads repeat/unique - unitig 113578 created. For tig 2605 repeat region 12398 14267 - 1/ 0 reads repeat/unique - unitig 113579 created. For tig 2605 unique region 14267 28013 - 0/ 11 reads repeat/unique - unitig 113580 created. Annotating repeats in reads for tig 2606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2607/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 5087:6812 - contained in read 316457 3453- 8881 discard region 14427:15302 - contained in read 426166 9013- 18478 thickest edges to the repeat regions: saved region 8132:14288 - closest 5' read 210710 ( +2464) 5668:8888 ( -5400) saved region 8132:14288 - closest 3' read 152000 ( -256) 8388:15162 ( +874) search for confused edges: discard region 8132:14288 - no confusion in best edges Annotating repeats in reads for tig 2609/113047. Annotated with 305 overlaps. Scan reads to discard spanned repeats. discard region 0:4717 - contained in read 203227 0- 7693 thickest edges to the repeat regions: saved region 7590:17886 - closest 5' read 708689 ( +1114) 6476:15641 ( -2245) saved region 7590:17886 - closest 3' read 144973 ( -4496) 12086:19911 ( +2025) search for confused edges: discard region 7590:17886 - no confusion in best edges Annotating repeats in reads for tig 2613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2620/113047. Annotated with 2248 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:18369 - closest 5' read 66611 ( +0) 0:12578 ( -5791) saved region 0:18369 - closest 3' read 230529 ( -9411) 9411:18369 ( +0) search for confused edges: tig 2620 read 140415 pos 4175-12710 IS confused by 3' edge to read 110652 - best edge read 66611 len 1637 erate 0.0685 score 1524.87 - alt edge len 873 erate 0.0493 score 829.96 - absdiff 694.90 percdiff 59.0196 tig 2620 read 140415 pos 4175-12710 IS confused by 3' edge to read 113252 - best edge read 66611 len 1637 erate 0.0685 score 1524.87 - alt edge len 1571 erate 0.0637 score 1470.93 - absdiff 53.94 percdiff 3.6009 tig 2620 read 230528 pos 6521-15347 NOT confused by 3' edge to read 40822 - best edge read 230529 len 8553 erate 0.0494 score 8130.48 - alt edge len 2615 erate 0.0562 score 2468.04 - absdiff 5662.44 percdiff 106.8535 tig 2620 read 230528 pos 6521-15347 NOT confused by 3' edge to read 93171 - best edge read 230529 len 8553 erate 0.0494 score 8130.48 - alt edge len 4629 erate 0.0558 score 4370.70 - absdiff 3759.78 percdiff 60.1508 tig 2620 read 230528 pos 6521-15347 NOT confused by 5' edge to read 130671 - best edge read 140415 len 6651 erate 0.0670 score 6205.38 - alt edge len 1858 erate 0.0624 score 1742.06 - absdiff 4463.32 percdiff 112.3210 tig 2620 read 230528 pos 6521-15347 NOT confused by 3' edge to read 196098 - best edge read 230529 len 8553 erate 0.0494 score 8130.48 - alt edge len 2669 erate 0.0697 score 2482.97 - absdiff 5647.51 percdiff 106.4218 tig 2620 read 230528 pos 6521-15347 NOT confused by 3' edge to read 196101 - best edge read 230529 len 8553 erate 0.0494 score 8130.48 - alt edge len 2733 erate 0.0699 score 2541.96 - absdiff 5588.52 percdiff 104.7280 tig 2620 read 230528 pos 6521-15347 NOT confused by 3' edge to read 350785 - best edge read 230529 len 8553 erate 0.0494 score 8130.48 - alt edge len 3002 erate 0.0587 score 2825.78 - absdiff 5304.70 percdiff 96.8341 tig 2620 read 230528 pos 6521-15347 NOT confused by 3' edge to read 682536 - best edge read 230529 len 8553 erate 0.0494 score 8130.48 - alt edge len 4447 erate 0.0570 score 4193.52 - absdiff 3936.96 percdiff 63.8909 tig 2620 read 56594 pos 8432-15457 NOT confused by 3' edge to read 27915 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 3361 erate 0.0616 score 3153.96 - absdiff 3278.37 percdiff 68.3970 tig 2620 read 56594 pos 8432-15457 IS confused by 3' edge to read 93171 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 6466 erate 0.0636 score 6054.76 - absdiff 377.57 percdiff 6.0473 tig 2620 read 56594 pos 8432-15457 NOT confused by 3' edge to read 190042 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 2729 erate 0.0517 score 2587.91 - absdiff 3844.42 percdiff 85.2398 tig 2620 read 56594 pos 8432-15457 NOT confused by 3' edge to read 196098 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 4495 erate 0.0427 score 4303.06 - absdiff 2129.26 percdiff 39.6681 tig 2620 read 56594 pos 8432-15457 IS confused by 3' edge to read 196101 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 4560 erate 0.0449 score 4355.26 - absdiff 2077.07 percdiff 38.5086 tig 2620 read 56594 pos 8432-15457 IS confused by 5' edge to read 350785 - best edge read 230529 len 5336 erate 0.0580 score 5026.51 - alt edge len 4077 erate 0.0614 score 3826.67 - absdiff 1199.84 percdiff 27.1053 tig 2620 read 56594 pos 8432-15457 NOT confused by 3' edge to read 566357 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 722 erate 0.0499 score 685.97 - absdiff 5746.36 percdiff 161.4530 tig 2620 read 56594 pos 8432-15457 IS confused by 3' edge to read 601472 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 4666 erate 0.0700 score 4339.38 - absdiff 2092.95 percdiff 38.8601 tig 2620 read 56594 pos 8432-15457 NOT confused by 3' edge to read 601474 - best edge read 340795 len 6832 erate 0.0585 score 6432.33 - alt edge len 4643 erate 0.0701 score 4317.53 - absdiff 2114.80 percdiff 39.3457 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 21508 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 851 erate 0.0552 score 804.02 - absdiff 7369.23 percdiff 164.1751 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 52738 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1843 erate 0.0613 score 1730.02 - absdiff 6443.23 percdiff 130.1232 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 113252 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1755 erate 0.0610 score 1647.95 - absdiff 6525.31 percdiff 132.8822 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 130671 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1771 erate 0.0440 score 1693.08 - absdiff 6480.18 percdiff 131.3595 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 140414 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 846 erate 0.0461 score 807.00 - absdiff 7366.26 percdiff 164.0545 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 172419 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1573 erate 0.0534 score 1489.00 - absdiff 6684.26 percdiff 138.3580 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 172422 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1578 erate 0.0641 score 1476.85 - absdiff 6696.41 percdiff 138.7841 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 350785 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1811 erate 0.0486 score 1722.99 - absdiff 6450.27 percdiff 130.3580 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 398969 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 2634 erate 0.0657 score 2460.95 - absdiff 5712.31 percdiff 107.4328 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 536734 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1619 erate 0.0519 score 1534.97 - absdiff 6638.28 percdiff 136.7558 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 574860 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1170 erate 0.0538 score 1107.05 - absdiff 7066.20 percdiff 152.2838 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 638612 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1770 erate 0.0661 score 1653.00 - absdiff 6520.26 percdiff 132.7108 tig 2620 read 230529 pos 9411-18369 NOT confused by 3' edge to read 638614 - best edge read 230528 len 8598 erate 0.0494 score 8173.26 - alt edge len 1813 erate 0.0667 score 1692.07 - absdiff 6481.19 percdiff 131.3932 saved region 0:18369 - 6 best edges are potentially confused Annotating repeats in reads for tig 2621/113047. Annotated with 557 overlaps. Scan reads to discard spanned repeats. discard region 6786:7337 - contained in read 230757 3421- 10835 thickest edges to the repeat regions: saved region 7404:11373 - closest 5' read 172374 ( +118) 7286:11159 ( -214) saved region 7404:11373 - closest 3' read 720780 ( -845) 8249:14330 ( +2957) search for confused edges: tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 13083 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2168 erate 0.0572 score 2043.99 - absdiff 629.87 percdiff 26.7016 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 60143 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2426 erate 0.0549 score 2292.81 - absdiff 381.05 percdiff 15.3442 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 132544 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2213 erate 0.0574 score 2085.97 - absdiff 587.89 percdiff 24.7020 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 173813 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1908 erate 0.0714 score 1771.77 - absdiff 902.09 percdiff 40.5833 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 184147 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 958 erate 0.0585 score 901.96 - absdiff 1771.90 percdiff 99.1048 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 184148 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 944 erate 0.0508 score 896.04 - absdiff 1777.82 percdiff 99.6001 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 195437 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1292 erate 0.0496 score 1227.92 - absdiff 1445.94 percdiff 74.1172 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 261754 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1066 erate 0.0592 score 1002.89 - absdiff 1670.97 percdiff 90.8936 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 261755 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1073 erate 0.0615 score 1007.01 - absdiff 1666.85 percdiff 90.5682 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 271434 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1366 erate 0.0682 score 1272.84 - absdiff 1401.02 percdiff 70.9971 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 332302 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 758 erate 0.0608 score 711.91 - absdiff 1961.95 percdiff 115.8935 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 454809 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 869 erate 0.0691 score 808.95 - absdiff 1864.91 percdiff 107.0921 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 478090 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 858 erate 0.0735 score 794.94 - absdiff 1878.92 percdiff 108.3328 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 488985 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2810 erate 0.0577 score 2647.86 - absdiff 26.00 percdiff 0.9770 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 515241 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 994 erate 0.0573 score 937.04 - absdiff 1736.82 percdiff 96.1984 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 515242 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1004 erate 0.0588 score 944.96 - absdiff 1728.90 percdiff 95.5501 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 517830 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2838 erate 0.0494 score 2697.80 - absdiff 23.94 percdiff 0.8914 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 563624 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 855 erate 0.0550 score 807.97 - absdiff 1865.89 percdiff 107.1783 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 602171 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1345 erate 0.0625 score 1260.94 - absdiff 1412.92 percdiff 71.8168 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 607785 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1839 erate 0.0577 score 1732.89 - absdiff 940.97 percdiff 42.7059 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 607786 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1837 erate 0.0578 score 1730.82 - absdiff 943.04 percdiff 42.8198 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 633923 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2822 erate 0.0617 score 2647.88 - absdiff 25.98 percdiff 0.9763 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 633924 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2516 erate 0.0680 score 2344.91 - absdiff 328.95 percdiff 13.1087 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 640621 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1772 erate 0.0661 score 1654.87 - absdiff 1018.99 percdiff 47.0803 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 702991 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 2251 erate 0.0596 score 2116.84 - absdiff 557.02 percdiff 23.2542 tig 2621 read 230758 pos 3434-11135 IS confused by 5' edge to read 711313 - best edge read 720780 len 2840 erate 0.0585 score 2673.86 - alt edge len 1942 erate 0.0582 score 1828.98 - absdiff 844.88 percdiff 37.5268 saved region 7404:11373 - 26 best edges are potentially confused break tig 2621 into up to 3 pieces: 0 6904 unique (length 6904) 6904 11873 repeat (length 4969) 11873 14376 unique (length 2503) Creating Unitig 113581 Creating Unitig 113582 Creating Unitig 113583 For tig 2621 unique region 0 6904 - 0/ 13 reads repeat/unique - unitig 113581 created. For tig 2621 repeat region 6904 11873 - 4/ 0 reads repeat/unique - unitig 113582 created. For tig 2621 unique region 11873 14376 - 0/ 2 reads repeat/unique - unitig 113583 created. Annotating repeats in reads for tig 2622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2623/113047. Annotated with 70 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13773:14650 - closest read 274883 ( +6118) 7655:14650 ( +0) (contained) saved region 13773:14650 - closest 5' read 274883 ( +6118) 7655:14650 ( +0) saved region 13773:14650 - closest 3' read 274883 ( +6118) 7655:14650 ( +0) search for confused edges: discard region 13773:14650 - no confusion in best edges Annotating repeats in reads for tig 2624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2629/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 7739:9309 - contained in read 156027 0- 13858 thickest edges to the repeat regions: saved region 12386:18251 - closest 5' read 629396 ( +9599) 2787:17908 ( -343) saved region 12386:18251 - closest 3' read 509363 ( -544) 12930:21216 ( +2965) search for confused edges: tig 2629 read 517745 pos 13187-29786 IS confused by 3' edge to read 631950 - best edge read 629396 len 4648 erate 0.0157 score 4575.03 - alt edge len 3521 erate 0.0145 score 3469.95 - absdiff 1105.08 percdiff 27.4726 saved region 12386:18251 - 1 best edges are potentially confused break tig 2629 into up to 3 pieces: 0 11886 unique (length 11886) 11886 18751 repeat (length 6865) 18751 30309 unique (length 11558) Creating Unitig 113584 Creating Unitig 113585 Creating Unitig 113586 For tig 2629 unique region 0 11886 - 0/ 97 reads repeat/unique - unitig 113584 created. For tig 2629 repeat region 11886 18751 - 5/ 0 reads repeat/unique - unitig 113585 created. For tig 2629 unique region 18751 30309 - 0/ 5 reads repeat/unique - unitig 113586 created. Annotating repeats in reads for tig 2632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2633/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 5147:3191 - contained in read 63678 0- 5147 thickest edges to the repeat regions: saved region 17550:18462 - closest 5' read 17448 ( +5690) 11860:18194 ( -268) saved region 17550:18462 - closest 3' read 389422 ( -39) 17589:23058 ( +4596) search for confused edges: tig 2633 read 17448 pos 11860-18194 IS confused by 5' edge to read 272001 - best edge read 389422 len 598 erate 0.0487 score 568.88 - alt edge len 581 erate 0.0571 score 547.82 - absdiff 21.05 percdiff 3.7705 tig 2633 read 17448 pos 11860-18194 IS confused by 5' edge to read 378590 - best edge read 389422 len 598 erate 0.0487 score 568.88 - alt edge len 612 erate 0.0640 score 572.83 - absdiff 3.95 percdiff 0.6928 tig 2633 read 17448 pos 11860-18194 IS confused by 5' edge to read 449571 - best edge read 389422 len 598 erate 0.0487 score 568.88 - alt edge len 565 erate 0.0723 score 524.15 - absdiff 44.73 percdiff 8.1840 saved region 17550:18462 - 3 best edges are potentially confused break tig 2633 into up to 3 pieces: 0 17050 unique (length 17050) 17050 18962 repeat (length 1912) 18962 26411 unique (length 7449) Creating Unitig 113587 Creating Unitig 113588 For tig 2633 unique region 0 17050 - 0/ 25 reads repeat/unique - unitig 113587 created. For tig 2633 repeat region 17050 18962 - 0/ 0 repeat/unique reads - no new unitig created. For tig 2633 unique region 18962 26411 - 0/ 3 reads repeat/unique - unitig 113588 created. Annotating repeats in reads for tig 2636/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 7284:8064 - contained in read 411741 1742- 8391 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2637/113047. Annotated with 305 overlaps. Scan reads to discard spanned repeats. discard region 1660:4965 - contained in read 64756 0- 5984 thickest edges to the repeat regions: saved region 5636:21196 - closest 5' read 490530 ( +3947) 1689:17378 ( -3818) saved region 5636:21196 - closest 3' read 197923 ( -9425) 15061:27799 ( +6603) search for confused edges: discard region 5636:21196 - no confusion in best edges Annotating repeats in reads for tig 2638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2642/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2174:6398 - closest read 479256 ( +1267) 907:6398 ( +0) (contained) saved region 2174:6398 - closest 5' read 479256 ( +1267) 907:6398 ( +0) saved region 2174:6398 - closest 3' read 479256 ( +1267) 907:6398 ( +0) search for confused edges: tig 2642 read 314084 pos 3385-10360 IS confused by 5' edge to read 448005 - best edge read 479256 len 2947 erate 0.0232 score 2878.63 - alt edge len 1632 erate 0.0321 score 1579.61 - absdiff 1299.02 percdiff 58.2748 tig 2642 read 314084 pos 3385-10360 IS confused by 5' edge to read 448008 - best edge read 479256 len 2947 erate 0.0232 score 2878.63 - alt edge len 1633 erate 0.0283 score 1586.79 - absdiff 1291.84 percdiff 57.8599 tig 2642 read 314084 pos 3385-10360 IS confused by 5' edge to read 576521 - best edge read 479256 len 2947 erate 0.0232 score 2878.63 - alt edge len 1323 erate 0.0236 score 1291.78 - absdiff 1586.85 percdiff 76.1006 tig 2642 read 314084 pos 3385-10360 IS confused by 5' edge to read 576522 - best edge read 479256 len 2947 erate 0.0232 score 2878.63 - alt edge len 1626 erate 0.0284 score 1579.82 - absdiff 1298.81 percdiff 58.2627 saved region 2174:6398 - 4 best edges are potentially confused break tig 2642 into up to 3 pieces: 0 1674 unique (length 1674) 1674 6898 repeat (length 5224) 6898 12152 unique (length 5254) Creating Unitig 113589 Creating Unitig 113590 Creating Unitig 113591 For tig 2642 unique region 0 1674 - 0/ 5 reads repeat/unique - unitig 113589 created. For tig 2642 repeat region 1674 6898 - 5/ 0 reads repeat/unique - unitig 113590 created. For tig 2642 unique region 6898 12152 - 0/ 16 reads repeat/unique - unitig 113591 created. Annotating repeats in reads for tig 2643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2646/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 7896:7353 - contained in read 68373 0- 8460 discard region 10993:14081 - contained in read 473368 7132- 19868 discard region 23472:25147 - contained in read 326312 18704- 26140 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2647/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 4626:3374 - contained in read 364374 0- 6451 discard region 17991:20797 - contained in read 79765 12296- 21315 thickest edges to the repeat regions: saved region 4818:8934 - closest read 222635 ( +2125) 2693:9315 ( +381) (contained) saved region 4818:8934 - closest read 593876 ( +1012) 3806:9042 ( +108) (contained) saved region 4818:8934 - closest 5' read 222635 ( +2125) 2693:9315 ( +381) saved region 4818:8934 - closest 3' read 222635 ( +2125) 2693:9315 ( +381) saved region 11413:14514 - closest read 256392 ( +9) 11404:17504 ( +2990) (contained) saved region 11413:14514 - closest 5' read 256392 ( +9) 11404:17504 ( +2990) saved region 11413:14514 - closest 3' read 256392 ( +9) 11404:17504 ( +2990) search for confused edges: discard region 4818:8934 - no confusion in best edges discard region 11413:14514 - no confusion in best edges Annotating repeats in reads for tig 2649/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2652/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2655/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8575:9405 - contained in read 607038 5385- 12661 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2662/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2491:3362 - contained in read 328695 0- 8244 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2663/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 20497:25490 - closest read 60413 ( +5436) 15061:25613 ( +123) (contained) saved region 20497:25490 - closest read 60412 ( +5432) 15065:25600 ( +110) (contained) saved region 20497:25490 - closest read 250259 ( +5409) 15088:25640 ( +150) (contained) saved region 20497:25490 - closest read 60411 ( +3116) 17381:25615 ( +125) (contained) saved region 20497:25490 - closest 5' read 250259 ( +5409) 15088:25640 ( +150) saved region 20497:25490 - closest 3' read 60413 ( +5436) 15061:25613 ( +123) search for confused edges: discard region 20497:25490 - no confusion in best edges Annotating repeats in reads for tig 2666/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4878:8839 - closest read 711918 ( +4062) 816:8839 ( +0) (contained) saved region 4878:8839 - closest 5' read 711918 ( +4062) 816:8839 ( +0) saved region 4878:8839 - closest 3' read 711918 ( +4062) 816:8839 ( +0) search for confused edges: tig 2666 read 305296 pos 5523-12324 IS confused by 3' edge to read 441697 - best edge read 711918 len 3258 erate 0.0688 score 3033.85 - alt edge len 1017 erate 0.0433 score 972.96 - absdiff 2060.89 percdiff 102.8691 tig 2666 read 305296 pos 5523-12324 IS confused by 3' edge to read 487703 - best edge read 711918 len 3258 erate 0.0688 score 3033.85 - alt edge len 1436 erate 0.0485 score 1366.35 - absdiff 1667.50 percdiff 75.7917 tig 2666 read 305296 pos 5523-12324 IS confused by 3' edge to read 487705 - best edge read 711918 len 3258 erate 0.0688 score 3033.85 - alt edge len 1434 erate 0.0456 score 1368.61 - absdiff 1665.24 percdiff 75.6504 saved region 4878:8839 - 3 best edges are potentially confused break tig 2666 into up to 3 pieces: 0 4378 unique (length 4378) 4378 9339 repeat (length 4961) 9339 21984 unique (length 12645) Creating Unitig 113592 Creating Unitig 113593 Creating Unitig 113594 For tig 2666 unique region 0 4378 - 0/ 2 reads repeat/unique - unitig 113592 created. For tig 2666 repeat region 4378 9339 - 1/ 0 reads repeat/unique - unitig 113594 created. For tig 2666 unique region 9339 21984 - 0/ 19 reads repeat/unique - unitig 113593 created. Annotating repeats in reads for tig 2669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2672/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3553:5776 - contained in read 88804 0- 8261 discard region 6089:8272 - contained in read 107036 2489- 11743 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2674/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2675/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6620 - closest 5' read 91291 ( +0) 0:6043 ( -577) saved region 0:6620 - closest 3' read 91287 ( -335) 335:6620 ( +0) search for confused edges: tig 2675 read 91289 pos 9-6609 NOT confused by 5' edge to read 156474 - best edge read 91291 len 6032 erate 0.0172 score 5928.25 - alt edge len 3007 erate 0.0254 score 2930.62 - absdiff 2997.63 percdiff 67.6752 tig 2675 read 91289 pos 9-6609 NOT confused by 3' edge to read 344715 - best edge read 91290 len 6585 erate 0.0148 score 6487.54 - alt edge len 1014 erate 0.0469 score 966.44 - absdiff 5521.10 percdiff 148.1382 tig 2675 read 91289 pos 9-6609 NOT confused by 5' edge to read 532080 - best edge read 91291 len 6032 erate 0.0172 score 5928.25 - alt edge len 2742 erate 0.0237 score 2677.01 - absdiff 3251.24 percdiff 75.5639 tig 2675 read 91290 pos 17-6614 NOT confused by 3' edge to read 156474 - best edge read 91289 len 6566 erate 0.0148 score 6468.82 - alt edge len 3004 erate 0.0268 score 2923.49 - absdiff 3545.33 percdiff 75.4943 tig 2675 read 91290 pos 17-6614 NOT confused by 3' edge to read 532080 - best edge read 91289 len 6566 erate 0.0148 score 6468.82 - alt edge len 2737 erate 0.0256 score 2666.93 - absdiff 3801.89 percdiff 83.2310 discard region 0:6620 - no confusion in best edges Annotating repeats in reads for tig 2676/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 14872:16308 - contained in read 295684 13291- 18874 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2678/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2681/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7798:8341 - contained in read 547934 1233- 10286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2682/113047. Annotated with 138 overlaps. Scan reads to discard spanned repeats. discard region 9938:10570 - contained in read 364636 7696- 14785 thickest edges to the repeat regions: saved region 11210:19616 - closest 5' read 128272 ( +3126) 8084:16275 ( -3341) saved region 11210:19616 - closest 3' read 62436 ( -2537) 13747:19737 ( +121) search for confused edges: tig 2682 read 62438 pos 13703-18523 NOT confused by 5' edge to read 366016 - best edge read 79779 len 3577 erate 0.0154 score 3521.91 - alt edge len 623 erate 0.0340 score 601.82 - absdiff 2920.10 percdiff 141.6239 tig 2682 read 62436 pos 13747-19737 NOT confused by 5' edge to read 366016 - best edge read 62438 len 4735 erate 0.0070 score 4701.85 - alt edge len 571 erate 0.0318 score 552.84 - absdiff 4149.01 percdiff 157.9163 discard region 11210:19616 - no confusion in best edges Annotating repeats in reads for tig 2684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2686/113047. Annotated with 110 overlaps. Scan reads to discard spanned repeats. discard region 4073:13180 - contained in read 231140 1867- 14402 discard region 24439:26908 - contained in read 529939 16190- 29111 discard region 26946:31207 - contained in read 383120 23648- 36674 thickest edges to the repeat regions: saved region 16085:23267 - closest 5' read 75233 ( +3114) 12971:21009 ( -2258) saved region 16085:23267 - closest 3' read 529939 ( -105) 16190:29111 ( +5844) search for confused edges: discard region 16085:23267 - no confusion in best edges Annotating repeats in reads for tig 2687/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 6886:7882 - contained in read 100481 8- 8572 discard region 19770:24560 - contained in read 482904 15344- 25984 thickest edges to the repeat regions: saved region 29944:31592 - closest read 467206 ( +0) 29944:37133 ( +5541) (contained) saved region 29944:31592 - closest 5' read 467206 ( +0) 29944:37133 ( +5541) saved region 29944:31592 - closest 3' read 467206 ( +0) 29944:37133 ( +5541) search for confused edges: discard region 29944:31592 - no confusion in best edges Annotating repeats in reads for tig 2688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2691/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 6560:8106 - contained in read 312191 2423- 8106 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2692/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5354:8853 - contained in read 721680 2782- 12959 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2694/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2697/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 4938:6930 - contained in read 93853 3226- 8269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2698/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4931:7650 - contained in read 79054 4392- 12674 discard region 13147:15389 - contained in read 315182 11263- 16489 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2700/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2701/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7208:8487 - contained in read 365862 2239- 10570 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2704/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 23263:24297 - contained in read 32250 5244- 25812 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2706/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8130:9303 - contained in read 562187 4577- 11023 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2709/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2713/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3740:4429 - contained in read 116938 22- 6735 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2715/113047. Annotated with 456 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14026 - closest 5' read 118286 ( +0) 0:7220 ( -6806) saved region 0:14026 - closest 3' read 84239 ( -6291) 6291:14026 ( +0) search for confused edges: tig 2715 read 118286 pos 0-7220 IS confused by 3' edge to read 282003 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 2182 erate 0.0331 score 2109.78 - absdiff 1166.45 percdiff 43.3143 tig 2715 read 118286 pos 0-7220 IS confused by 3' edge to read 474785 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 3184 erate 0.0210 score 3117.14 - absdiff 159.09 percdiff 4.9769 tig 2715 read 118286 pos 0-7220 IS confused by 3' edge to read 474786 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 3200 erate 0.0299 score 3104.32 - absdiff 171.91 percdiff 5.3886 tig 2715 read 118286 pos 0-7220 IS confused by 3' edge to read 561547 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 1582 erate 0.0423 score 1515.08 - absdiff 1761.15 percdiff 73.5143 tig 2715 read 118286 pos 0-7220 NOT confused by 3' edge to read 660247 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 1110 erate 0.0461 score 1058.83 - absdiff 2217.40 percdiff 102.3009 tig 2715 read 118286 pos 0-7220 IS confused by 3' edge to read 708191 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 2192 erate 0.0240 score 2139.39 - absdiff 1136.84 percdiff 41.9837 tig 2715 read 118286 pos 0-7220 NOT confused by 3' edge to read 720520 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 515 erate 0.0534 score 487.50 - absdiff 2788.73 percdiff 148.1898 tig 2715 read 118286 pos 0-7220 NOT confused by 3' edge to read 720521 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 508 erate 0.0493 score 482.96 - absdiff 2793.27 percdiff 148.6106 tig 2715 read 118286 pos 0-7220 NOT confused by 3' edge to read 720522 - best edge read 662793 len 3527 erate 0.0711 score 3276.23 - alt edge len 516 erate 0.0450 score 492.78 - absdiff 2783.45 percdiff 147.7019 tig 2715 read 662793 pos 3518-13698 IS confused by 5' edge to read 474785 - best edge read 722314 len 2966 erate 0.0165 score 2917.06 - alt edge len 2494 erate 0.0117 score 2464.82 - absdiff 452.24 percdiff 16.8060 tig 2715 read 662793 pos 3518-13698 IS confused by 5' edge to read 474786 - best edge read 722314 len 2966 erate 0.0165 score 2917.06 - alt edge len 2509 erate 0.0263 score 2443.01 - absdiff 474.05 percdiff 17.6881 tig 2715 read 662793 pos 3518-13698 IS confused by 5' edge to read 561547 - best edge read 722314 len 2966 erate 0.0165 score 2917.06 - alt edge len 905 erate 0.0369 score 871.61 - absdiff 2045.46 percdiff 107.9776 saved region 0:14026 - 8 best edges are potentially confused break tig 2715 into up to 2 pieces: 0 14526 repeat (length 14526) 14526 18101 unique (length 3575) Creating Unitig 113595 Creating Unitig 113596 For tig 2715 repeat region 0 14526 - 63/ 0 reads repeat/unique - unitig 113595 created. For tig 2715 unique region 14526 18101 - 0/ 2 reads repeat/unique - unitig 113596 created. Annotating repeats in reads for tig 2716/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 12646:14258 - contained in read 248098 3514- 15301 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2727/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 2156:6047 - contained in read 150281 79- 6736 discard region 6139:10494 - contained in read 190873 4278- 11070 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2732/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6021:7089 - closest read 630208 ( +4971) 1050:7089 ( +0) (contained) saved region 6021:7089 - closest read 713882 ( +238) 5783:11560 ( +4471) (contained) saved region 6021:7089 - closest read 713881 ( +233) 5788:11531 ( +4442) (contained) saved region 6021:7089 - closest read 713878 ( +233) 5788:11001 ( +3912) (contained) saved region 6021:7089 - closest read 713879 ( +231) 5790:11208 ( +4119) (contained) saved region 6021:7089 - closest read 713880 ( +186) 5835:11563 ( +4474) (contained) saved region 6021:7089 - closest read 123236 ( +36) 5985:15564 ( +8475) (contained) saved region 6021:7089 - closest 5' read 123236 ( +36) 5985:15564 ( +8475) saved region 6021:7089 - closest 3' read 630208 ( +4971) 1050:7089 ( +0) search for confused edges: discard region 6021:7089 - no confusion in best edges Annotating repeats in reads for tig 2734/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 14356:17847 - contained in read 497199 13526- 18938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2739/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2742/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9385:8596 - contained in read 343905 3237- 10024 discard region 9482:8860 - contained in read 343905 3237- 10024 discard region 10833:9453 - contained in read 343905 3237- 10024 discard region 15171:16173 - contained in read 620351 9997- 20144 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2743/113047. Annotated with 416 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 24:8728 - closest 5' read 424145 ( +24) 0:8721 ( -7) saved region 24:8728 - closest 3' read 685653 ( -1745) 1769:8728 ( +0) search for confused edges: tig 2743 read 424145 pos 0-8721 NOT confused by 3' edge to read 485217 - best edge read 424144 len 8452 erate 0.0238 score 8250.84 - alt edge len 5679 erate 0.0688 score 5288.28 - absdiff 2962.56 percdiff 43.7629 tig 2743 read 424144 pos 177-8719 NOT confused by 3' edge to read 237074 - best edge read 424145 len 8420 erate 0.0238 score 8219.60 - alt edge len 1770 erate 0.0545 score 1673.54 - absdiff 6546.07 percdiff 132.3355 tig 2743 read 424144 pos 177-8719 NOT confused by 3' edge to read 237075 - best edge read 424145 len 8420 erate 0.0238 score 8219.60 - alt edge len 691 erate 0.0394 score 663.77 - absdiff 7555.83 percdiff 170.1116 tig 2743 read 424144 pos 177-8719 IS confused by 3' edge to read 424143 - best edge read 424145 len 8420 erate 0.0238 score 8219.60 - alt edge len 8084 erate 0.0227 score 7900.49 - absdiff 319.11 percdiff 3.9592 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 13050 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1961 erate 0.0694 score 1824.91 - absdiff 2669.87 percdiff 84.4937 tig 2743 read 206005 pos 3775-10619 IS confused by 3' edge to read 23602 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 2880 erate 0.0378 score 2771.14 - absdiff 1723.64 percdiff 47.4445 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 89673 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1926 erate 0.0561 score 1817.95 - absdiff 2676.82 percdiff 84.8072 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 94857 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 730 erate 0.0718 score 677.59 - absdiff 3817.19 percdiff 147.5995 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 108968 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1254 erate 0.0687 score 1167.85 - absdiff 3326.92 percdiff 117.5046 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 140165 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 2429 erate 0.0506 score 2306.09 - absdiff 2188.68 percdiff 64.3648 tig 2743 read 206005 pos 3775-10619 IS confused by 3' edge to read 140290 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 3691 erate 0.0420 score 3535.98 - absdiff 958.79 percdiff 23.8781 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 145921 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1730 erate 0.0642 score 1618.93 - absdiff 2875.84 percdiff 94.0784 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 149490 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1309 erate 0.0535 score 1238.97 - absdiff 3255.80 percdiff 113.5665 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 224560 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1228 erate 0.0700 score 1142.04 - absdiff 3352.73 percdiff 118.9585 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 224562 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1231 erate 0.0601 score 1157.02 - absdiff 3337.76 percdiff 118.1132 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 234449 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1752 erate 0.0405 score 1681.04 - absdiff 2813.73 percdiff 91.1209 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 263519 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1830 erate 0.0650 score 1711.05 - absdiff 2783.72 percdiff 89.7133 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 306130 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 2058 erate 0.0690 score 1916.00 - absdiff 2578.77 percdiff 80.4513 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 358669 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1735 erate 0.0628 score 1626.04 - absdiff 2868.73 percdiff 93.7369 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 415530 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1759 erate 0.0665 score 1642.03 - absdiff 2852.75 percdiff 92.9718 tig 2743 read 206005 pos 3775-10619 IS confused by 3' edge to read 424143 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 4502 erate 0.0282 score 4375.04 - absdiff 119.73 percdiff 2.6997 tig 2743 read 206005 pos 3775-10619 IS confused by 3' edge to read 526631 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 3216 erate 0.0709 score 2987.99 - absdiff 1506.79 percdiff 40.2736 tig 2743 read 206005 pos 3775-10619 IS confused by 3' edge to read 526632 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 3204 erate 0.0730 score 2970.11 - absdiff 1524.66 percdiff 40.8490 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 586441 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1200 erate 0.0600 score 1128.00 - absdiff 3366.77 percdiff 119.7549 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 589088 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 2197 erate 0.0706 score 2041.89 - absdiff 2452.88 percdiff 75.0499 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 589089 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 2237 erate 0.0706 score 2079.07 - absdiff 2415.70 percdiff 73.4945 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 645911 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 2134 erate 0.0426 score 2043.09 - absdiff 2451.68 percdiff 74.9995 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 718838 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1555 erate 0.0386 score 1494.98 - absdiff 2999.80 percdiff 100.1643 tig 2743 read 206005 pos 3775-10619 NOT confused by 3' edge to read 718839 - best edge read 424144 len 4816 erate 0.0667 score 4494.77 - alt edge len 1553 erate 0.0406 score 1489.95 - absdiff 3004.82 percdiff 100.4165 saved region 24:8728 - 6 best edges are potentially confused break tig 2743 into up to 2 pieces: 0 9228 repeat (length 9228) 9228 11188 unique (length 1960) Creating Unitig 113597 Creating Unitig 113598 For tig 2743 repeat region 0 9228 - 45/ 0 reads repeat/unique - unitig 113597 created. For tig 2743 unique region 9228 11188 - 0/ 7 reads repeat/unique - unitig 113598 created. Annotating repeats in reads for tig 2744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2746/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2747/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2755/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2757/113047. Annotated with 1474 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:17008 - closest 5' read 337026 ( +0) 0:6920 (-10088) saved region 0:17008 - closest 3' read 244553 ( -3885) 3885:19294 ( +2286) search for confused edges: tig 2757 read 337025 pos 8-12082 NOT confused by 5' edge to read 48215 - best edge read 534660 len 8832 erate 0.0403 score 8476.07 - alt edge len 3570 erate 0.0507 score 3389.00 - absdiff 5087.07 percdiff 85.7487 tig 2757 read 337025 pos 8-12082 NOT confused by 5' edge to read 496412 - best edge read 534660 len 8832 erate 0.0403 score 8476.07 - alt edge len 3764 erate 0.0579 score 3546.06 - absdiff 4930.01 percdiff 82.0155 tig 2757 read 337025 pos 8-12082 NOT confused by 5' edge to read 521790 - best edge read 534660 len 8832 erate 0.0403 score 8476.07 - alt edge len 3619 erate 0.0488 score 3442.39 - absdiff 5033.68 percdiff 84.4686 tig 2757 read 337025 pos 8-12082 NOT confused by 5' edge to read 627789 - best edge read 534660 len 8832 erate 0.0403 score 8476.07 - alt edge len 3170 erate 0.0501 score 3011.18 - absdiff 5464.89 percdiff 95.1470 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 48215 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 3454 erate 0.0337 score 3337.60 - absdiff 3765.88 percdiff 72.1358 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 104540 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 2227 erate 0.0487 score 2118.55 - absdiff 4984.93 percdiff 108.1093 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 146597 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 640 erate 0.0521 score 606.66 - absdiff 6496.82 percdiff 168.5268 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 330220 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 1221 erate 0.0581 score 1150.06 - absdiff 5953.42 percdiff 144.2634 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 451840 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 4162 erate 0.0621 score 3903.54 - absdiff 3199.94 percdiff 58.1436 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 496412 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 3972 erate 0.0415 score 3807.16 - absdiff 3296.31 percdiff 60.4239 tig 2757 read 534660 pos 2982-12172 NOT confused by 3' edge to read 514738 - best edge read 337025 len 8904 erate 0.0403 score 8545.17 - alt edge len 2212 erate 0.0273 score 2151.61 - absdiff 6393.56 percdiff 119.5417 tig 2757 read 534660 pos 2982-12172 NOT confused by 3' edge to read 519122 - best edge read 337025 len 8904 erate 0.0403 score 8545.17 - alt edge len 3161 erate 0.0678 score 2946.68 - absdiff 5598.48 percdiff 97.4340 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 521790 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 3826 erate 0.0312 score 3706.63 - absdiff 3396.85 percdiff 62.8458 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 576386 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 2121 erate 0.0616 score 1990.35 - absdiff 5113.13 percdiff 112.4528 tig 2757 read 534660 pos 2982-12172 NOT confused by 5' edge to read 627789 - best edge read 244554 len 7418 erate 0.0424 score 7103.48 - alt edge len 3056 erate 0.0305 score 2962.79 - absdiff 4140.68 percdiff 82.2685 tig 2757 read 244554 pos 4142-17691 NOT confused by 5' edge to read 514738 - best edge read 534660 len 7391 erate 0.0424 score 7077.62 - alt edge len 567 erate 0.0517 score 537.69 - absdiff 6539.94 percdiff 171.7576 tig 2757 read 244554 pos 4142-17691 NOT confused by 5' edge to read 519122 - best edge read 534660 len 7391 erate 0.0424 score 7077.62 - alt edge len 1508 erate 0.0647 score 1410.43 - absdiff 5667.19 percdiff 133.5333 discard region 0:17008 - no confusion in best edges Annotating repeats in reads for tig 2758/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 13019:11084 - contained in read 203633 8404- 13266 thickest edges to the repeat regions: saved region 7368:10991 - closest read 600203 ( +1468) 5900:10991 ( +0) (contained) saved region 7368:10991 - closest 5' read 600203 ( +1468) 5900:10991 ( +0) saved region 7368:10991 - closest 3' read 600203 ( +1468) 5900:10991 ( +0) search for confused edges: discard region 7368:10991 - no confusion in best edges Annotating repeats in reads for tig 2759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2761/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2763/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12644:15372 - closest read 14823 ( +0) 12644:19470 ( +4098) (contained) saved region 12644:15372 - closest 5' read 14823 ( +0) 12644:19470 ( +4098) saved region 12644:15372 - closest 3' read 14823 ( +0) 12644:19470 ( +4098) search for confused edges: discard region 12644:15372 - no confusion in best edges Annotating repeats in reads for tig 2765/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2766/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2772/113047. Annotated with 73 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 521:8640 - closest 5' read 171455 ( +521) 0:8178 ( -462) saved region 521:8640 - closest 3' read 487848 ( -3512) 4033:10565 ( +1925) search for confused edges: tig 2772 read 487847 pos 4050-10599 IS confused by 5' edge to read 514099 - best edge read 171455 len 4065 erate 0.0290 score 3947.11 - alt edge len 3941 erate 0.0300 score 3822.77 - absdiff 124.34 percdiff 3.2007 tig 2772 read 487847 pos 4050-10599 IS confused by 5' edge to read 514100 - best edge read 171455 len 4065 erate 0.0290 score 3947.11 - alt edge len 3932 erate 0.0341 score 3797.92 - absdiff 149.20 percdiff 3.8527 tig 2772 read 487847 pos 4050-10599 IS confused by 5' edge to read 514367 - best edge read 171455 len 4065 erate 0.0290 score 3947.11 - alt edge len 3009 erate 0.0196 score 2950.02 - absdiff 997.09 percdiff 28.9132 saved region 521:8640 - 3 best edges are potentially confused break tig 2772 into up to 3 pieces: 0 21 unique (length 21) 21 9140 repeat (length 9119) 9140 12629 unique (length 3489) Creating Unitig 113599 Creating Unitig 113600 Creating Unitig 113601 For tig 2772 unique region 0 21 - 0/ 1 reads repeat/unique - unitig 113599 created. For tig 2772 repeat region 21 9140 - 5/ 0 reads repeat/unique - unitig 113600 created. For tig 2772 unique region 9140 12629 - 0/ 7 reads repeat/unique - unitig 113601 created. Annotating repeats in reads for tig 2773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2774/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5748:8075 - contained in read 211502 1583- 9626 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2776/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2777/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5923:8045 - contained in read 121618 4594- 12227 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2780/113047. Annotated with 180 overlaps. Scan reads to discard spanned repeats. discard region 10888:15461 - contained in read 153911 8710- 15461 thickest edges to the repeat regions: saved region 5080:10715 - closest read 252847 ( +1081) 3999:10877 ( +162) (contained) saved region 5080:10715 - closest read 706203 ( +0) 5080:10908 ( +193) (contained) saved region 5080:10715 - closest 5' read 706203 ( +0) 5080:10908 ( +193) saved region 5080:10715 - closest 3' read 252847 ( +1081) 3999:10877 ( +162) search for confused edges: discard region 5080:10715 - no confusion in best edges Annotating repeats in reads for tig 2781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2785/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 1783:2946 - contained in read 482307 0- 5896 discard region 4528:6829 - contained in read 92928 2190- 8475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2791/113047. Annotated with 65 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21378:25955 - closest 5' read 417249 ( +4096) 17282:23229 ( -2726) saved region 21378:25955 - closest 3' read 435177 ( -10) 21388:30924 ( +4969) search for confused edges: tig 2791 read 417248 pos 14318-23063 IS confused by 3' edge to read 342509 - best edge read 435177 len 1628 erate 0.0694 score 1515.02 - alt edge len 1532 erate 0.0594 score 1441.00 - absdiff 74.02 percdiff 5.0079 tig 2791 read 417248 pos 14318-23063 IS confused by 3' edge to read 672927 - best edge read 435177 len 1628 erate 0.0694 score 1515.02 - alt edge len 1481 erate 0.0594 score 1393.03 - absdiff 121.99 percdiff 8.3897 tig 2791 read 417248 pos 14318-23063 IS confused by 3' edge to read 688756 - best edge read 435177 len 1628 erate 0.0694 score 1515.02 - alt edge len 1521 erate 0.0598 score 1430.04 - absdiff 84.97 percdiff 5.7705 saved region 21378:25955 - 3 best edges are potentially confused break tig 2791 into up to 3 pieces: 0 20878 unique (length 20878) 20878 26455 repeat (length 5577) 26455 30924 unique (length 4469) Creating Unitig 113602 Creating Unitig 113603 Creating Unitig 113604 For tig 2791 unique region 0 20878 - 0/ 29 reads repeat/unique - unitig 113602 created. For tig 2791 repeat region 20878 26455 - 33/ 0 reads repeat/unique - unitig 113603 created. For tig 2791 unique region 26455 30924 - 0/ 3 reads repeat/unique - unitig 113604 created. Annotating repeats in reads for tig 2792/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13582:16817 - closest read 556409 ( +3947) 9635:16826 ( +9) (contained) saved region 13582:16817 - closest read 612761 ( +3915) 9667:16817 ( +0) (contained) saved region 13582:16817 - closest 5' read 556409 ( +3947) 9635:16826 ( +9) saved region 13582:16817 - closest 3' read 556409 ( +3947) 9635:16826 ( +9) search for confused edges: discard region 13582:16817 - no confusion in best edges Annotating repeats in reads for tig 2796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2797/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14968:16952 - closest read 548704 ( +0) 14968:21725 ( +4773) (contained) saved region 14968:16952 - closest 5' read 548704 ( +0) 14968:21725 ( +4773) saved region 14968:16952 - closest 3' read 548704 ( +0) 14968:21725 ( +4773) search for confused edges: discard region 14968:16952 - no confusion in best edges Annotating repeats in reads for tig 2798/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 10159:8951 - contained in read 606456 4099- 9590 discard region 17210:21133 - contained in read 595017 13278- 21779 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2801/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2804/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 18831:19654 - contained in read 528199 9181- 21368 discard region 20667:21266 - contained in read 264539 18831- 24105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2805/113047. Annotated with 87 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8922 - closest 5' read 161913 ( +0) 0:6972 ( -1950) saved region 0:8922 - closest 3' read 182807 ( -3299) 3299:9317 ( +395) search for confused edges: tig 2805 read 161913 pos 0-6972 NOT confused by 3' edge to read 155481 - best edge read 161912 len 6769 erate 0.0156 score 6663.40 - alt edge len 2076 erate 0.0350 score 2003.34 - absdiff 4660.06 percdiff 107.5390 tig 2805 read 161913 pos 0-6972 NOT confused by 3' edge to read 155483 - best edge read 161912 len 6769 erate 0.0156 score 6663.40 - alt edge len 2022 erate 0.0365 score 1948.20 - absdiff 4715.21 percdiff 109.5083 tig 2805 read 161913 pos 0-6972 NOT confused by 3' edge to read 492863 - best edge read 161912 len 6769 erate 0.0156 score 6663.40 - alt edge len 2399 erate 0.0392 score 2304.96 - absdiff 4358.44 percdiff 97.1960 tig 2805 read 161912 pos 110-7908 IS confused by 5' edge to read 155481 - best edge read 182807 len 4539 erate 0.0349 score 4380.59 - alt edge len 2994 erate 0.0242 score 2921.55 - absdiff 1459.04 percdiff 39.9621 tig 2805 read 161912 pos 110-7908 IS confused by 5' edge to read 155483 - best edge read 182807 len 4539 erate 0.0349 score 4380.59 - alt edge len 2940 erate 0.0267 score 2861.50 - absdiff 1519.09 percdiff 41.9516 tig 2805 read 161912 pos 110-7908 NOT confused by 3' edge to read 444214 - best edge read 161913 len 6752 erate 0.0156 score 6646.67 - alt edge len 4107 erate 0.0344 score 3965.72 - absdiff 2680.95 percdiff 50.5249 tig 2805 read 161912 pos 110-7908 IS confused by 5' edge to read 492863 - best edge read 182807 len 4539 erate 0.0349 score 4380.59 - alt edge len 3317 erate 0.0291 score 3220.48 - absdiff 1160.11 percdiff 30.5250 tig 2805 read 161912 pos 110-7908 IS confused by 3' edge to read 541847 - best edge read 161913 len 6752 erate 0.0156 score 6646.67 - alt edge len 4676 erate 0.0131 score 4614.74 - absdiff 2031.92 percdiff 36.0865 tig 2805 read 161912 pos 110-7908 NOT confused by 3' edge to read 641970 - best edge read 161913 len 6752 erate 0.0156 score 6646.67 - alt edge len 3886 erate 0.0445 score 3713.07 - absdiff 2933.60 percdiff 56.6345 tig 2805 read 182807 pos 3299-9317 NOT confused by 5' edge to read 444214 - best edge read 161912 len 4489 erate 0.0347 score 4333.23 - alt edge len 925 erate 0.0532 score 875.79 - absdiff 3457.44 percdiff 132.7482 tig 2805 read 182807 pos 3299-9317 NOT confused by 5' edge to read 541847 - best edge read 161912 len 4489 erate 0.0347 score 4333.23 - alt edge len 1484 erate 0.0467 score 1414.70 - absdiff 2918.53 percdiff 101.5508 saved region 0:8922 - 4 best edges are potentially confused Annotating repeats in reads for tig 2807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2816/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10719:12851 - closest read 642212 ( +0) 10719:18475 ( +5624) (contained) saved region 10719:12851 - closest 5' read 642212 ( +0) 10719:18475 ( +5624) saved region 10719:12851 - closest 3' read 642212 ( +0) 10719:18475 ( +5624) search for confused edges: tig 2816 read 642214 pos 10735-18456 IS confused by 3' edge to read 219893 - best edge read 348790 len 1499 erate 0.0541 score 1417.90 - alt edge len 1349 erate 0.0616 score 1265.90 - absdiff 152.00 percdiff 11.3274 tig 2816 read 642214 pos 10735-18456 IS confused by 3' edge to read 219894 - best edge read 348790 len 1499 erate 0.0541 score 1417.90 - alt edge len 1344 erate 0.0640 score 1257.98 - absdiff 159.92 percdiff 11.9527 saved region 10719:12851 - 2 best edges are potentially confused break tig 2816 into up to 3 pieces: 0 10219 unique (length 10219) 10219 13351 repeat (length 3132) 13351 26297 unique (length 12946) Creating Unitig 113605 Creating Unitig 113606 For tig 2816 unique region 0 10219 - 0/ 7 reads repeat/unique - unitig 113605 created. For tig 2816 repeat region 10219 13351 - 0/ 0 repeat/unique reads - no new unitig created. For tig 2816 unique region 13351 26297 - 0/ 17 reads repeat/unique - unitig 113606 created. Annotating repeats in reads for tig 2822/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4487:6367 - closest read 19869 ( +344) 4143:8690 ( +2323) (contained) saved region 4487:6367 - closest read 50048 ( +187) 4300:6367 ( +0) (contained) saved region 4487:6367 - closest 5' read 19869 ( +344) 4143:8690 ( +2323) saved region 4487:6367 - closest 3' read 19869 ( +344) 4143:8690 ( +2323) search for confused edges: discard region 4487:6367 - no confusion in best edges Annotating repeats in reads for tig 2823/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4970:3869 - contained in read 712900 229- 7594 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2831/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2834/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14660:16010 - closest read 197807 ( +3064) 11596:16067 ( +57) (contained) saved region 14660:16010 - closest read 465383 ( +0) 14660:16072 ( +62) (contained) saved region 14660:16010 - closest 5' read 465383 ( +0) 14660:16072 ( +62) saved region 14660:16010 - closest 3' read 197807 ( +3064) 11596:16067 ( +57) search for confused edges: discard region 14660:16010 - no confusion in best edges Annotating repeats in reads for tig 2836/113047. Annotated with 141 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6658:11809 - closest 5' read 55140 ( +698) 5960:11610 ( -199) saved region 6658:11809 - closest 3' read 277604 ( -94) 6752:13385 ( +1576) search for confused edges: tig 2836 read 55140 pos 5960-11610 IS confused by 3' edge to read 69194 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 3080 erate 0.0704 score 2863.17 - absdiff 1727.81 percdiff 46.3584 tig 2836 read 55140 pos 5960-11610 IS confused by 3' edge to read 69195 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 2799 erate 0.0704 score 2601.95 - absdiff 1989.03 percdiff 55.3051 tig 2836 read 55140 pos 5960-11610 NOT confused by 3' edge to read 206655 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 2174 erate 0.0474 score 2070.95 - absdiff 2520.03 percdiff 75.6546 tig 2836 read 55140 pos 5960-11610 NOT confused by 3' edge to read 211247 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 545 erate 0.0317 score 527.72 - absdiff 4063.26 percdiff 158.7612 tig 2836 read 55140 pos 5960-11610 NOT confused by 3' edge to read 333006 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 573 erate 0.0459 score 546.70 - absdiff 4044.28 percdiff 157.4361 tig 2836 read 55140 pos 5960-11610 NOT confused by 3' edge to read 333007 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 578 erate 0.0385 score 555.75 - absdiff 4035.23 percdiff 156.8077 tig 2836 read 55140 pos 5960-11610 IS confused by 3' edge to read 353965 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 4215 erate 0.0573 score 3973.48 - absdiff 617.50 percdiff 14.4201 tig 2836 read 55140 pos 5960-11610 NOT confused by 3' edge to read 428468 - best edge read 277604 len 4757 erate 0.0349 score 4590.98 - alt edge len 1532 erate 0.0451 score 1462.91 - absdiff 3128.07 percdiff 103.3410 saved region 6658:11809 - 3 best edges are potentially confused break tig 2836 into up to 3 pieces: 0 6158 unique (length 6158) 6158 12309 repeat (length 6151) 12309 22800 unique (length 10491) Creating Unitig 113607 Creating Unitig 113608 Creating Unitig 113609 For tig 2836 unique region 0 6158 - 0/ 9 reads repeat/unique - unitig 113607 created. For tig 2836 repeat region 6158 12309 - 8/ 0 reads repeat/unique - unitig 113608 created. For tig 2836 unique region 12309 22800 - 0/ 12 reads repeat/unique - unitig 113609 created. Annotating repeats in reads for tig 2837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2843/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 956:7582 - contained in read 642637 0- 10728 discard region 8452:11610 - contained in read 218856 2330- 12320 discard region 12048:13176 - contained in read 181064 4659- 13176 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2847/113047. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 14904:15515 - contained in read 714479 12008- 19617 thickest edges to the repeat regions: saved region 1291:12073 - closest read 344181 ( +0) 1291:12564 ( +491) (contained) saved region 1291:12073 - closest 5' read 344181 ( +0) 1291:12564 ( +491) saved region 1291:12073 - closest 3' read 344181 ( +0) 1291:12564 ( +491) search for confused edges: tig 2847 read 326848 pos 817-7110 NOT confused by 3' edge to read 276361 - best edge read 326849 len 5083 erate 0.0232 score 4965.07 - alt edge len 1909 erate 0.0578 score 1798.66 - absdiff 3166.41 percdiff 93.6292 tig 2847 read 326848 pos 817-7110 NOT confused by 3' edge to read 703329 - best edge read 326849 len 5083 erate 0.0232 score 4965.07 - alt edge len 1580 erate 0.0392 score 1518.06 - absdiff 3447.01 percdiff 106.3377 tig 2847 read 326848 pos 817-7110 NOT confused by 3' edge to read 703330 - best edge read 326849 len 5083 erate 0.0232 score 4965.07 - alt edge len 1571 erate 0.0387 score 1510.20 - absdiff 3454.87 percdiff 106.7096 tig 2847 read 326849 pos 1747-6966 NOT confused by 5' edge to read 276361 - best edge read 241150 len 4075 erate 0.0193 score 3996.35 - alt edge len 1939 erate 0.0388 score 1863.77 - absdiff 2132.59 percdiff 72.7830 tig 2847 read 326849 pos 1747-6966 NOT confused by 5' edge to read 703329 - best edge read 241150 len 4075 erate 0.0193 score 3996.35 - alt edge len 1614 erate 0.0155 score 1588.98 - absdiff 2407.37 percdiff 86.2032 tig 2847 read 326849 pos 1747-6966 NOT confused by 5' edge to read 703330 - best edge read 241150 len 4075 erate 0.0193 score 3996.35 - alt edge len 1605 erate 0.0162 score 1579.00 - absdiff 2417.35 percdiff 86.7157 discard region 1291:12073 - no confusion in best edges Annotating repeats in reads for tig 2848/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2850/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2854/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 8944:9595 - contained in read 624886 2931- 11973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2857/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 8009:6977 - contained in read 128913 525- 9468 thickest edges to the repeat regions: saved region 9842:12897 - closest read 62255 ( +0) 9842:13013 ( +116) (contained) saved region 9842:12897 - closest 5' read 62255 ( +0) 9842:13013 ( +116) saved region 9842:12897 - closest 3' read 62255 ( +0) 9842:13013 ( +116) search for confused edges: discard region 9842:12897 - no confusion in best edges Annotating repeats in reads for tig 2859/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 13613:12977 - contained in read 254375 1007- 17069 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2860/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 9268:12884 - contained in read 609369 8223- 14131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2863/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2865/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2870/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4447:7101 - contained in read 501593 4- 7101 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2875/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2268:1199 - contained in read 283989 0- 6244 discard region 6543:7387 - contained in read 481851 970- 8403 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2878/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7881:14439 - closest read 494876 ( +241) 7640:14575 ( +136) (contained) saved region 7881:14439 - closest read 144866 ( +62) 7819:15925 ( +1486) (contained) saved region 7881:14439 - closest 5' read 144866 ( +62) 7819:15925 ( +1486) saved region 7881:14439 - closest 3' read 494876 ( +241) 7640:14575 ( +136) search for confused edges: discard region 7881:14439 - no confusion in best edges Annotating repeats in reads for tig 2881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2884/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12883:14066 - contained in read 225616 8151- 19091 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2885/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5527:10459 - closest 5' read 342621 ( +2268) 3259:7337 ( -3122) saved region 5527:10459 - closest 3' read 247588 ( -29) 5556:10459 ( +0) search for confused edges: tig 2885 read 247588 pos 5556-10459 IS confused by 5' edge to read 122482 - best edge read 133728 len 1732 erate 0.0553 score 1636.22 - alt edge len 1489 erate 0.0263 score 1449.84 - absdiff 186.38 percdiff 12.0789 tig 2885 read 247588 pos 5556-10459 IS confused by 5' edge to read 550316 - best edge read 133728 len 1732 erate 0.0553 score 1636.22 - alt edge len 725 erate 0.0401 score 695.93 - absdiff 940.29 percdiff 80.6375 saved region 5527:10459 - 2 best edges are potentially confused break tig 2885 into up to 2 pieces: 0 5027 unique (length 5027) 5027 10459 repeat (length 5432) Creating Unitig 113610 Creating Unitig 113611 For tig 2885 unique region 0 5027 - 0/ 9 reads repeat/unique - unitig 113610 created. For tig 2885 repeat region 5027 10459 - 18/ 0 reads repeat/unique - unitig 113611 created. Annotating repeats in reads for tig 2888/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3700:4218 - contained in read 253695 0- 7027 discard region 6670:7536 - contained in read 458957 1167- 10488 discard region 8071:8595 - contained in read 458957 1167- 10488 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2892/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7127:12524 - closest read 49119 ( +0) 7127:16927 ( +4403) (contained) saved region 7127:12524 - closest 5' read 49119 ( +0) 7127:16927 ( +4403) saved region 7127:12524 - closest 3' read 49119 ( +0) 7127:16927 ( +4403) search for confused edges: discard region 7127:12524 - no confusion in best edges Annotating repeats in reads for tig 2893/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2894/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2899/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2902/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5540:6612 - contained in read 547078 3330- 11096 discard region 11236:10120 - contained in read 547078 3330- 11096 discard region 11669:10237 - contained in read 547078 3330- 11096 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2903/113047. Annotated with 327 overlaps. Scan reads to discard spanned repeats. discard region 20305:20892 - contained in read 260251 19549- 20892 thickest edges to the repeat regions: saved region 13664:18508 - closest 5' read 588778 ( +4614) 9050:18191 ( -317) saved region 13664:18508 - closest 3' read 33163 ( -555) 14219:20386 ( +1878) search for confused edges: tig 2903 read 33166 pos 14223-20392 IS confused by 5' edge to read 51901 - best edge read 588779 len 3803 erate 0.0568 score 3586.99 - alt edge len 2767 erate 0.0612 score 2597.66 - absdiff 989.33 percdiff 31.9931 tig 2903 read 33166 pos 14223-20392 IS confused by 5' edge to read 110294 - best edge read 588779 len 3803 erate 0.0568 score 3586.99 - alt edge len 3142 erate 0.0606 score 2951.59 - absdiff 635.39 percdiff 19.4352 tig 2903 read 33166 pos 14223-20392 NOT confused by 5' edge to read 521261 - best edge read 588779 len 3803 erate 0.0568 score 3586.99 - alt edge len 1322 erate 0.0679 score 1232.24 - absdiff 2354.75 percdiff 97.7233 tig 2903 read 33166 pos 14223-20392 NOT confused by 5' edge to read 521262 - best edge read 588779 len 3803 erate 0.0568 score 3586.99 - alt edge len 1323 erate 0.0680 score 1233.04 - absdiff 2353.95 percdiff 97.6739 tig 2903 read 33166 pos 14223-20392 NOT confused by 5' edge to read 535887 - best edge read 588779 len 3803 erate 0.0568 score 3586.99 - alt edge len 1066 erate 0.0677 score 993.83 - absdiff 2593.16 percdiff 113.2180 tig 2903 read 33166 pos 14223-20392 IS confused by 5' edge to read 554990 - best edge read 588779 len 3803 erate 0.0568 score 3586.99 - alt edge len 1991 erate 0.0741 score 1843.47 - absdiff 1743.52 percdiff 64.2127 saved region 13664:18508 - 3 best edges are potentially confused break tig 2903 into up to 3 pieces: 0 13164 unique (length 13164) 13164 19008 repeat (length 5844) 19008 20892 unique (length 1884) Creating Unitig 113612 Creating Unitig 113613 Creating Unitig 113614 For tig 2903 unique region 0 13164 - 0/ 15 reads repeat/unique - unitig 113612 created. For tig 2903 repeat region 13164 19008 - 1/ 0 reads repeat/unique - unitig 113614 created. For tig 2903 unique region 19008 20892 - 0/ 11 reads repeat/unique - unitig 113613 created. Annotating repeats in reads for tig 2905/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 18017:18637 - contained in read 287642 13922- 19517 thickest edges to the repeat regions: saved region 1209:14535 - closest 5' read 305539 ( +595) 614:7942 ( -6593) saved region 1209:14535 - closest 3' read 593809 ( -5988) 7197:14535 ( +0) search for confused edges: tig 2905 read 305539 pos 614-7942 NOT confused by 5' edge to read 591678 - best edge read 480956 len 6033 erate 0.0675 score 5625.77 - alt edge len 2103 erate 0.0701 score 1955.58 - absdiff 3670.19 percdiff 96.8216 tig 2905 read 305539 pos 614-7942 NOT confused by 5' edge to read 642427 - best edge read 480956 len 6033 erate 0.0675 score 5625.77 - alt edge len 1522 erate 0.0638 score 1424.90 - absdiff 4200.88 percdiff 119.1625 tig 2905 read 480956 pos 3021-11521 NOT confused by 5' edge to read 109796 - best edge read 305539 len 6139 erate 0.0709 score 5703.74 - alt edge len 2517 erate 0.0497 score 2391.91 - absdiff 3311.84 percdiff 81.8178 tig 2905 read 480956 pos 3021-11521 NOT confused by 5' edge to read 307211 - best edge read 305539 len 6139 erate 0.0709 score 5703.74 - alt edge len 3431 erate 0.0590 score 3228.57 - absdiff 2475.17 percdiff 55.4207 tig 2905 read 480956 pos 3021-11521 NOT confused by 5' edge to read 307212 - best edge read 305539 len 6139 erate 0.0709 score 5703.74 - alt edge len 3563 erate 0.0625 score 3340.31 - absdiff 2363.43 percdiff 52.2649 tig 2905 read 593809 pos 7197-14535 IS confused by 3' edge to read 109796 - best edge read 480956 len 2903 erate 0.0482 score 2763.08 - alt edge len 1126 erate 0.0670 score 1050.56 - absdiff 1712.52 percdiff 89.8103 saved region 1209:14535 - 1 best edges are potentially confused break tig 2905 into up to 3 pieces: 0 709 unique (length 709) 709 15035 repeat (length 14326) 15035 26345 unique (length 11310) Creating Unitig 113615 Creating Unitig 113616 Creating Unitig 113617 For tig 2905 unique region 0 709 - 0/ 2 reads repeat/unique - unitig 113615 created. For tig 2905 repeat region 709 15035 - 24/ 0 reads repeat/unique - unitig 113616 created. For tig 2905 unique region 15035 26345 - 0/ 17 reads repeat/unique - unitig 113617 created. Annotating repeats in reads for tig 2909/113047. Annotated with 147 overlaps. Scan reads to discard spanned repeats. discard region 0:1635 - contained in read 705638 0- 6684 thickest edges to the repeat regions: saved region 2601:8813 - closest 5' read 670909 ( +22) 2579:8780 ( -33) saved region 2601:8813 - closest 3' read 419955 ( -17) 2618:10689 ( +1876) search for confused edges: tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 74683 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 993 erate 0.0615 score 931.93 - absdiff 4519.31 percdiff 141.6008 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 80043 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1594 erate 0.0596 score 1499.00 - absdiff 3952.25 percdiff 113.7298 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 88747 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 950 erate 0.0636 score 889.58 - absdiff 4561.66 percdiff 143.8824 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 88748 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 939 erate 0.0518 score 890.36 - absdiff 4560.89 percdiff 143.8401 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 88751 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 963 erate 0.0632 score 902.14 - absdiff 4549.11 percdiff 143.2026 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 103591 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 671 erate 0.0522 score 635.97 - absdiff 4815.27 percdiff 158.2092 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 109661 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 3224 erate 0.0527 score 3054.10 - absdiff 2397.15 percdiff 56.3681 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 125877 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 2126 erate 0.0574 score 2003.97 - absdiff 3447.28 percdiff 92.4797 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 125879 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 2041 erate 0.0549 score 1928.95 - absdiff 3522.30 percdiff 95.4527 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 129971 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1067 erate 0.0712 score 991.03 - absdiff 4460.22 percdiff 138.4671 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 158334 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 3582 erate 0.0692 score 3334.13 - absdiff 2117.12 percdiff 48.1965 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 192614 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 3159 erate 0.0529 score 2991.89 - absdiff 2459.36 percdiff 58.2569 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 231857 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 2795 erate 0.0590 score 2630.10 - absdiff 2821.15 percdiff 69.8189 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 255796 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1076 erate 0.0520 score 1020.05 - absdiff 4431.20 percdiff 136.9494 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 372042 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 2119 erate 0.0368 score 2041.02 - absdiff 3410.22 percdiff 91.0332 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 390788 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 2162 erate 0.0735 score 2003.09 - absdiff 3448.15 percdiff 92.5140 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 397558 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 727 erate 0.0639 score 680.54 - absdiff 4770.70 percdiff 155.6055 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 427076 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 3384 erate 0.0733 score 3135.95 - absdiff 2315.29 percdiff 53.9243 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 477306 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 799 erate 0.0675 score 745.07 - absdiff 4706.18 percdiff 151.9025 tig 2909 read 705637 pos 137-8669 IS confused by 5' edge to read 492035 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 3992 erate 0.0496 score 3794.00 - absdiff 1657.25 percdiff 35.8508 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 553849 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1740 erate 0.0374 score 1674.92 - absdiff 3776.32 percdiff 105.9846 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 553851 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1737 erate 0.0403 score 1667.00 - absdiff 3784.25 percdiff 106.3253 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 559717 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1970 erate 0.0629 score 1846.09 - absdiff 3605.16 percdiff 98.8076 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 559718 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 1985 erate 0.0640 score 1857.96 - absdiff 3593.28 percdiff 98.3222 tig 2909 read 705637 pos 137-8669 NOT confused by 5' edge to read 601950 - best edge read 419955 len 5854 erate 0.0688 score 5451.24 - alt edge len 2215 erate 0.0641 score 2073.02 - absdiff 3378.23 percdiff 89.7955 tig 2909 read 419955 pos 2618-10689 NOT confused by 3' edge to read 577098 - best edge read 705637 len 5970 erate 0.0688 score 5559.26 - alt edge len 3089 erate 0.0681 score 2878.64 - absdiff 2680.62 percdiff 63.5377 tig 2909 read 419955 pos 2618-10689 NOT confused by 3' edge to read 663433 - best edge read 705637 len 5970 erate 0.0688 score 5559.26 - alt edge len 2976 erate 0.0596 score 2798.63 - absdiff 2760.63 percdiff 66.0605 saved region 2601:8813 - 1 best edges are potentially confused break tig 2909 into up to 3 pieces: 0 2101 unique (length 2101) 2101 9313 repeat (length 7212) 9313 17369 unique (length 8056) Creating Unitig 113618 Creating Unitig 113619 Creating Unitig 113620 For tig 2909 unique region 0 2101 - 0/ 3 reads repeat/unique - unitig 113618 created. For tig 2909 repeat region 2101 9313 - 83/ 0 reads repeat/unique - unitig 113619 created. For tig 2909 unique region 9313 17369 - 0/ 18 reads repeat/unique - unitig 113620 created. Annotating repeats in reads for tig 2914/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2916/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2920/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7531:8694 - contained in read 676082 3106- 12616 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2923/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:5246 - contained in read 115163 0- 7621 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2929/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2931/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 0:2274 - contained in read 461692 0- 5287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2935/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2940/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1349:4418 - contained in read 442470 0- 6515 discard region 6807:5417 - contained in read 442470 0- 6515 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2946/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2949/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 12296:11722 - contained in read 141303 5547- 12721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2956/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1599:2233 - closest read 302452 ( +1599) 0:2233 ( +0) (contained) saved region 1599:2233 - closest read 507054 ( +132) 1467:5704 ( +3471) (contained) saved region 1599:2233 - closest 5' read 507054 ( +132) 1467:5704 ( +3471) saved region 1599:2233 - closest 3' read 302452 ( +1599) 0:2233 ( +0) saved region 12291:17188 - closest read 214562 ( +6937) 5354:17222 ( +34) (contained) saved region 12291:17188 - closest read 214561 ( +6899) 5392:17271 ( +83) (contained) saved region 12291:17188 - closest read 536607 ( +0) 12291:18400 ( +1212) (contained) saved region 12291:17188 - closest 5' read 536607 ( +0) 12291:18400 ( +1212) saved region 12291:17188 - closest 3' read 214562 ( +6937) 5354:17222 ( +34) search for confused edges: discard region 1599:2233 - no confusion in best edges discard region 12291:17188 - no confusion in best edges Annotating repeats in reads for tig 2958/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 15343:15983 - contained in read 82543 6296- 17255 discard region 17290:19194 - contained in read 161760 12815- 21393 discard region 21772:25378 - contained in read 304061 19427- 27257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2960/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2963/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4904:10697 - closest read 638991 ( +0) 4904:10719 ( +22) (contained) saved region 4904:10697 - closest 5' read 638991 ( +0) 4904:10719 ( +22) saved region 4904:10697 - closest 3' read 638991 ( +0) 4904:10719 ( +22) search for confused edges: tig 2963 read 470860 pos 3900-10690 NOT confused by 3' edge to read 69563 - best edge read 638991 len 5623 erate 0.0701 score 5228.83 - alt edge len 2755 erate 0.0171 score 2707.89 - absdiff 2520.94 percdiff 63.5260 tig 2963 read 470860 pos 3900-10690 NOT confused by 3' edge to read 248768 - best edge read 638991 len 5623 erate 0.0701 score 5228.83 - alt edge len 3191 erate 0.0630 score 2989.97 - absdiff 2238.86 percdiff 54.4815 tig 2963 read 470860 pos 3900-10690 NOT confused by 3' edge to read 248770 - best edge read 638991 len 5623 erate 0.0701 score 5228.83 - alt edge len 3148 erate 0.0702 score 2927.01 - absdiff 2301.82 percdiff 56.4459 tig 2963 read 470860 pos 3900-10690 IS confused by 3' edge to read 552991 - best edge read 638991 len 5623 erate 0.0701 score 5228.83 - alt edge len 3714 erate 0.0708 score 3451.05 - absdiff 1777.78 percdiff 40.9632 tig 2963 read 470860 pos 3900-10690 NOT confused by 3' edge to read 623421 - best edge read 638991 len 5623 erate 0.0701 score 5228.83 - alt edge len 612 erate 0.0392 score 588.01 - absdiff 4640.82 percdiff 159.5650 tig 2963 read 470860 pos 3900-10690 NOT confused by 3' edge to read 623423 - best edge read 638991 len 5623 erate 0.0701 score 5228.83 - alt edge len 575 erate 0.0383 score 552.98 - absdiff 4675.85 percdiff 161.7436 tig 2963 read 449823 pos 10011-16281 IS confused by 3' edge to read 474756 - best edge read 638990 len 681 erate 0.0662 score 635.92 - alt edge len 667 erate 0.0571 score 628.91 - absdiff 7.00 percdiff 1.1074 saved region 4904:10697 - 2 best edges are potentially confused break tig 2963 into up to 3 pieces: 0 4404 unique (length 4404) 4404 11197 repeat (length 6793) 11197 17128 unique (length 5931) Creating Unitig 113621 Creating Unitig 113622 Creating Unitig 113623 For tig 2963 unique region 0 4404 - 0/ 3 reads repeat/unique - unitig 113621 created. For tig 2963 repeat region 4404 11197 - 42/ 0 reads repeat/unique - unitig 113622 created. For tig 2963 unique region 11197 17128 - 0/ 10 reads repeat/unique - unitig 113623 created. Annotating repeats in reads for tig 2970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2983/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6016:6631 - contained in read 497776 459- 8072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2989/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 1906:4499 - contained in read 523811 0- 5870 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2995/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19132:27273 - closest 5' read 162530 ( +0) 19132:23789 ( -3484) saved region 19132:27273 - closest 3' read 380968 ( -715) 19847:27273 ( +0) search for confused edges: tig 2995 read 380968 pos 19847-27273 IS confused by 5' edge to read 45584 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 5801 erate 0.0041 score 5777.22 - absdiff 1215.72 percdiff 19.0400 tig 2995 read 380968 pos 19847-27273 IS confused by 5' edge to read 45585 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 5787 erate 0.0036 score 5766.17 - absdiff 1226.77 percdiff 19.2297 tig 2995 read 380968 pos 19847-27273 IS confused by 5' edge to read 157696 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 6753 erate 0.0099 score 6686.15 - absdiff 306.79 percdiff 4.4856 tig 2995 read 380968 pos 19847-27273 IS confused by 5' edge to read 157697 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 6741 erate 0.0093 score 6678.31 - absdiff 314.63 percdiff 4.6028 tig 2995 read 380968 pos 19847-27273 NOT confused by 5' edge to read 396023 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 3247 erate 0.0169 score 3192.13 - absdiff 3800.81 percdiff 74.6350 tig 2995 read 380968 pos 19847-27273 NOT confused by 5' edge to read 418015 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 1650 erate 0.0412 score 1582.02 - absdiff 5410.92 percdiff 126.2028 tig 2995 read 380968 pos 19847-27273 NOT confused by 5' edge to read 564467 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 3217 erate 0.0233 score 3142.04 - absdiff 3850.89 percdiff 75.9921 tig 2995 read 380968 pos 19847-27273 NOT confused by 5' edge to read 564468 - best edge read 15671 len 7065 erate 0.0102 score 6992.94 - alt edge len 3216 erate 0.0190 score 3154.90 - absdiff 3838.04 percdiff 75.6426 tig 2995 read 601091 pos 19848-28930 IS confused by 5' edge to read 45584 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 5803 erate 0.0043 score 5778.05 - absdiff 1541.17 percdiff 23.5343 tig 2995 read 601091 pos 19848-28930 IS confused by 5' edge to read 45585 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 5789 erate 0.0045 score 5762.95 - absdiff 1556.27 percdiff 23.7922 tig 2995 read 601091 pos 19848-28930 IS confused by 5' edge to read 157696 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 6754 erate 0.0099 score 6687.14 - absdiff 632.08 percdiff 9.0257 tig 2995 read 601091 pos 19848-28930 IS confused by 5' edge to read 157697 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 6742 erate 0.0098 score 6675.93 - absdiff 643.29 percdiff 9.1931 tig 2995 read 601091 pos 19848-28930 NOT confused by 5' edge to read 396023 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 3249 erate 0.0157 score 3197.99 - absdiff 4121.23 percdiff 78.3711 tig 2995 read 601091 pos 19848-28930 NOT confused by 5' edge to read 418015 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 1652 erate 0.0400 score 1585.92 - absdiff 5733.30 percdiff 128.7638 tig 2995 read 601091 pos 19848-28930 NOT confused by 5' edge to read 564467 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 3218 erate 0.0224 score 3145.92 - absdiff 4173.30 percdiff 79.7563 tig 2995 read 601091 pos 19848-28930 NOT confused by 5' edge to read 564468 - best edge read 380968 len 7356 erate 0.0050 score 7319.22 - alt edge len 3217 erate 0.0183 score 3158.13 - absdiff 4161.09 percdiff 79.4302 saved region 19132:27273 - 8 best edges are potentially confused break tig 2995 into up to 3 pieces: 0 18632 unique (length 18632) 18632 27773 repeat (length 9141) 27773 29519 unique (length 1746) Creating Unitig 113624 Creating Unitig 113625 Creating Unitig 113626 For tig 2995 unique region 0 18632 - 0/ 30 reads repeat/unique - unitig 113624 created. For tig 2995 repeat region 18632 27773 - 40/ 0 reads repeat/unique - unitig 113625 created. For tig 2995 unique region 27773 29519 - 0/ 3 reads repeat/unique - unitig 113626 created. Annotating repeats in reads for tig 3000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3009/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10220:11368 - contained in read 246810 3280- 12527 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3010/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 910:1587 - contained in read 554449 0- 5602 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3016/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3028/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3030/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11644:13454 - closest read 660501 ( +7838) 3806:13454 ( +0) (contained) saved region 11644:13454 - closest 5' read 660501 ( +7838) 3806:13454 ( +0) saved region 11644:13454 - closest 3' read 660501 ( +7838) 3806:13454 ( +0) search for confused edges: tig 3030 read 671913 pos 12475-19135 IS confused by 5' edge to read 163343 - best edge read 660501 len 954 erate 0.0610 score 895.81 - alt edge len 870 erate 0.0634 score 814.84 - absdiff 80.96 percdiff 9.4659 tig 3030 read 671913 pos 12475-19135 IS confused by 5' edge to read 163344 - best edge read 660501 len 954 erate 0.0610 score 895.81 - alt edge len 874 erate 0.0689 score 813.78 - absdiff 82.02 percdiff 9.5958 saved region 11644:13454 - 2 best edges are potentially confused break tig 3030 into up to 3 pieces: 0 11144 unique (length 11144) 11144 13954 repeat (length 2810) 13954 29088 unique (length 15134) Creating Unitig 113627 Creating Unitig 113628 Creating Unitig 113629 For tig 3030 unique region 0 11144 - 0/ 14 reads repeat/unique - unitig 113627 created. For tig 3030 repeat region 11144 13954 - 3/ 0 reads repeat/unique - unitig 113628 created. For tig 3030 unique region 13954 29088 - 0/ 15 reads repeat/unique - unitig 113629 created. Annotating repeats in reads for tig 3032/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4345:5471 - contained in read 586492 0- 8366 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3036/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5720:6967 - contained in read 461321 1286- 6967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3037/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8229:4128 - contained in read 645749 0- 5925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3040/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 6166:7036 - contained in read 560690 0- 8922 discard region 9156:9992 - contained in read 12696 3401- 11025 thickest edges to the repeat regions: saved region 11284:11924 - closest read 628292 ( +1745) 9539:12206 ( +282) (contained) saved region 11284:11924 - closest read 522909 ( +0) 11284:22302 (+10378) (contained) saved region 11284:11924 - closest 5' read 522909 ( +0) 11284:22302 (+10378) saved region 11284:11924 - closest 3' read 628292 ( +1745) 9539:12206 ( +282) search for confused edges: discard region 11284:11924 - no confusion in best edges Annotating repeats in reads for tig 3044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3046/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3676:5797 - contained in read 202460 1430- 7597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3047/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5318:6754 - contained in read 329740 4264- 7383 discard region 6891:7671 - contained in read 373305 4494- 10011 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3048/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13097:21232 - closest 5' read 514099 ( +805) 12292:20579 ( -653) saved region 13097:21232 - closest 3' read 543211 ( -519) 13616:21329 ( +97) search for confused edges: tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 40563 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1564 erate 0.0659 score 1460.93 - absdiff 5239.88 percdiff 128.4009 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 40565 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1569 erate 0.0720 score 1456.03 - absdiff 5244.78 percdiff 128.5982 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 100582 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1058 erate 0.0218 score 1034.94 - absdiff 5665.87 percdiff 146.4855 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 192449 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1720 erate 0.0282 score 1671.50 - absdiff 5029.31 percdiff 120.1417 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 213884 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 2317 erate 0.0578 score 2183.08 - absdiff 4517.73 percdiff 101.7062 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 213886 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 2315 erate 0.0488 score 2202.03 - absdiff 4498.78 percdiff 101.0640 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 431648 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 2372 erate 0.0540 score 2243.91 - absdiff 4456.90 percdiff 99.6542 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 487847 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 3962 erate 0.0300 score 3843.14 - absdiff 2857.67 percdiff 54.2049 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 487849 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 3833 erate 0.0551 score 3621.80 - absdiff 3079.01 percdiff 59.6556 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 558525 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1284 erate 0.0406 score 1231.87 - absdiff 5468.94 percdiff 137.8838 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 587687 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1229 erate 0.0261 score 1196.92 - absdiff 5503.89 percdiff 139.3789 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 663797 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1456 erate 0.0214 score 1424.84 - absdiff 5275.97 percdiff 129.8596 tig 3048 read 514099 pos 12292-20579 NOT confused by 3' edge to read 706159 - best edge read 543211 len 6891 erate 0.0276 score 6700.81 - alt edge len 1898 erate 0.0427 score 1816.96 - absdiff 4883.85 percdiff 114.6745 discard region 13097:21232 - no confusion in best edges Annotating repeats in reads for tig 3054/113047. Annotated with 591 overlaps. Scan reads to discard spanned repeats. discard region 3305:9253 - contained in read 175693 28- 9253 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3060/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6249:6841 - contained in read 179651 5493- 11476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3061/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 10110:11106 - contained in read 207313 6294- 14521 discard region 16018:16831 - contained in read 242056 15335- 19181 thickest edges to the repeat regions: saved region 4884:5617 - closest read 547173 ( +4884) 0:5779 ( +162) (contained) saved region 4884:5617 - closest read 547169 ( +4879) 5:5781 ( +164) (contained) saved region 4884:5617 - closest read 699055 ( +0) 4884:8705 ( +3088) (contained) saved region 4884:5617 - closest 5' read 699055 ( +0) 4884:8705 ( +3088) saved region 4884:5617 - closest 3' read 547173 ( +4884) 0:5779 ( +162) search for confused edges: discard region 4884:5617 - no confusion in best edges Annotating repeats in reads for tig 3066/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3068/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 12782:15856 - contained in read 393936 9505- 17217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3069/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2840:5068 - contained in read 468250 0- 9356 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3070/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2168:13137 - closest 5' read 303983 ( +1971) 197:5783 ( -7354) saved region 2168:13137 - closest 3' read 396381 ( -4451) 6619:13777 ( +640) search for confused edges: discard region 2168:13137 - no confusion in best edges Annotating repeats in reads for tig 3071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3074/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3093/113047. Annotated with 734 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8642:13978 - closest 5' read 311374 ( +2404) 6238:13730 ( -248) saved region 8642:13978 - closest 3' read 65341 ( -322) 8964:17572 ( +3594) search for confused edges: tig 3093 read 311374 pos 6238-13730 NOT confused by 5' edge to read 13082 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 2262 erate 0.0743 score 2093.93 - absdiff 2301.06 percdiff 70.9227 tig 3093 read 311374 pos 6238-13730 NOT confused by 5' edge to read 13083 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 2307 erate 0.0572 score 2175.04 - absdiff 2219.95 percdiff 67.5782 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 40951 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4117 erate 0.0310 score 3989.37 - absdiff 405.62 percdiff 9.6756 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 40952 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4096 erate 0.0351 score 3952.23 - absdiff 442.76 percdiff 10.6086 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 40953 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4078 erate 0.0326 score 3945.06 - absdiff 449.94 percdiff 10.7898 tig 3093 read 311374 pos 6238-13730 NOT confused by 5' edge to read 57852 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 1644 erate 0.0580 score 1548.65 - absdiff 2846.35 percdiff 95.7778 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 60143 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 2570 erate 0.0530 score 2433.79 - absdiff 1961.20 percdiff 57.4393 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 69310 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4080 erate 0.0586 score 3840.91 - absdiff 554.08 percdiff 13.4553 tig 3093 read 311374 pos 6238-13730 NOT confused by 5' edge to read 165135 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 2342 erate 0.0747 score 2167.05 - absdiff 2227.94 percdiff 67.9038 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 169948 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 3230 erate 0.0412 score 3096.92 - absdiff 1298.07 percdiff 34.6525 tig 3093 read 311374 pos 6238-13730 NOT confused by 5' edge to read 195437 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 1411 erate 0.0627 score 1322.53 - absdiff 3072.46 percdiff 107.4753 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 241563 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 3871 erate 0.0603 score 3637.58 - absdiff 757.41 percdiff 18.8586 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 280493 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4467 erate 0.0276 score 4343.71 - absdiff 51.28 percdiff 1.1737 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 284289 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4186 erate 0.0330 score 4047.86 - absdiff 347.13 percdiff 8.2231 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 293759 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4062 erate 0.0481 score 3866.62 - absdiff 528.38 percdiff 12.7911 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 313456 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4423 erate 0.0576 score 4168.24 - absdiff 226.76 percdiff 5.2961 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 446890 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4163 erate 0.0259 score 4055.18 - absdiff 339.82 percdiff 8.0428 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 488985 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 2971 erate 0.0514 score 2818.29 - absdiff 1576.70 percdiff 43.7166 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 559084 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 3566 erate 0.0690 score 3319.95 - absdiff 1075.05 percdiff 27.8692 tig 3093 read 311374 pos 6238-13730 IS confused by 5' edge to read 640013 - best edge read 65341 len 4682 erate 0.0613 score 4394.99 - alt edge len 4350 erate 0.0444 score 4156.86 - absdiff 238.13 percdiff 5.5692 saved region 8642:13978 - 15 best edges are potentially confused break tig 3093 into up to 3 pieces: 0 8142 unique (length 8142) 8142 14478 repeat (length 6336) 14478 19103 unique (length 4625) Creating Unitig 113630 Creating Unitig 113631 Creating Unitig 113632 For tig 3093 unique region 0 8142 - 0/ 22 reads repeat/unique - unitig 113630 created. For tig 3093 repeat region 8142 14478 - 7/ 0 reads repeat/unique - unitig 113632 created. For tig 3093 unique region 14478 19103 - 0/ 5 reads repeat/unique - unitig 113631 created. Annotating repeats in reads for tig 3097/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4150 - closest read 410359 ( +0) 0:4358 ( +208) (contained) saved region 0:4150 - closest 5' read 410359 ( +0) 0:4358 ( +208) saved region 0:4150 - closest 3' read 410359 ( +0) 0:4358 ( +208) search for confused edges: discard region 0:4150 - no confusion in best edges Annotating repeats in reads for tig 3099/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3692:4875 - contained in read 147858 0- 6395 discard region 23021:24408 - contained in read 501487 8589- 25302 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3100/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:1037 - contained in read 363395 0- 9388 discard region 3749:4948 - contained in read 363395 0- 9388 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3107/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 856:9056 - contained in read 567708 0- 10508 thickest edges to the repeat regions: saved region 12453:18463 - closest read 105508 ( +5367) 7086:18463 ( +0) (contained) saved region 12453:18463 - closest 5' read 105508 ( +5367) 7086:18463 ( +0) saved region 12453:18463 - closest 3' read 105508 ( +5367) 7086:18463 ( +0) search for confused edges: discard region 12453:18463 - no confusion in best edges Annotating repeats in reads for tig 3108/113047. Annotated with 143 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6502:14259 - closest 5' read 709860 ( +2857) 3645:12853 ( -1406) saved region 6502:14259 - closest 3' read 651384 ( -4704) 11206:20900 ( +6641) search for confused edges: discard region 6502:14259 - no confusion in best edges Annotating repeats in reads for tig 3109/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19399:22956 - closest read 33189 ( +2861) 16538:23208 ( +252) (contained) saved region 19399:22956 - closest read 33185 ( +2852) 16547:23174 ( +218) (contained) saved region 19399:22956 - closest read 33186 ( +2851) 16548:23188 ( +232) (contained) saved region 19399:22956 - closest read 33188 ( +2846) 16553:23191 ( +235) (contained) saved region 19399:22956 - closest read 33187 ( +2842) 16557:23140 ( +184) (contained) saved region 19399:22956 - closest 5' read 33189 ( +2861) 16538:23208 ( +252) saved region 19399:22956 - closest 3' read 33189 ( +2861) 16538:23208 ( +252) search for confused edges: discard region 19399:22956 - no confusion in best edges Annotating repeats in reads for tig 3111/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1712:0 - contained in read 559691 0- 2922 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3120/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3122/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 5299:9321 - contained in read 434867 160- 9321 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3128/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3143/113047. Annotated with 1286 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 202:26556 - closest 5' read 555838 ( +0) 202:12894 (-13662) saved region 202:26556 - closest 3' read 124050 (-16684) 16886:26556 ( +0) search for confused edges: tig 3143 read 387419 pos 2931-19211 IS confused by 5' edge to read 118290 - best edge read 407445 len 3756 erate 0.0439 score 3591.11 - alt edge len 2880 erate 0.0420 score 2759.04 - absdiff 832.07 percdiff 26.2064 tig 3143 read 232695 pos 5512-17146 NOT confused by 5' edge to read 118290 - best edge read 570136 len 9474 erate 0.0261 score 9226.73 - alt edge len 1500 erate 0.0576 score 1413.60 - absdiff 7813.13 percdiff 146.8588 tig 3143 read 232695 pos 5512-17146 NOT confused by 5' edge to read 407445 - best edge read 570136 len 9474 erate 0.0261 score 9226.73 - alt edge len 2670 erate 0.0707 score 2481.23 - absdiff 6745.50 percdiff 115.2293 tig 3143 read 570136 pos 8672-21597 NOT confused by 3' edge to read 118290 - best edge read 344752 len 10775 erate 0.0570 score 10160.82 - alt edge len 1520 erate 0.0539 score 1438.07 - absdiff 8722.75 percdiff 150.4066 tig 3143 read 570136 pos 8672-21597 NOT confused by 3' edge to read 407445 - best edge read 344752 len 10775 erate 0.0570 score 10160.82 - alt edge len 2713 erate 0.0564 score 2559.99 - absdiff 7600.84 percdiff 119.5024 tig 3143 read 344752 pos 10503-21583 NOT confused by 3' edge to read 118290 - best edge read 234458 len 6877 erate 0.0607 score 6459.57 - alt edge len 1679 erate 0.0655 score 1569.03 - absdiff 4890.54 percdiff 121.8281 tig 3143 read 344752 pos 10503-21583 NOT confused by 3' edge to read 407445 - best edge read 234458 len 6877 erate 0.0607 score 6459.57 - alt edge len 2887 erate 0.0707 score 2682.89 - absdiff 3776.68 percdiff 82.6184 tig 3143 read 344752 pos 10503-21583 NOT confused by 3' edge to read 573755 - best edge read 234458 len 6877 erate 0.0607 score 6459.57 - alt edge len 849 erate 0.0707 score 788.98 - absdiff 5670.59 percdiff 156.4615 tig 3143 read 234458 pos 12217-24363 NOT confused by 5' edge to read 310243 - best edge read 344752 len 6938 erate 0.0607 score 6516.86 - alt edge len 2461 erate 0.0448 score 2350.75 - absdiff 4166.12 percdiff 93.9625 tig 3143 read 442275 pos 20406-27131 IS confused by 3' edge to read 310243 - best edge read 234458 len 3938 erate 0.0676 score 3671.79 - alt edge len 2454 erate 0.0636 score 2297.93 - absdiff 1373.87 percdiff 46.0278 saved region 202:26556 - 2 best edges are potentially confused break tig 3143 into up to 2 pieces: 0 27056 repeat (length 27056) 27056 27327 unique (length 271) Creating Unitig 113633 Creating Unitig 113634 For tig 3143 repeat region 0 27056 - 296/ 0 reads repeat/unique - unitig 113633 created. For tig 3143 unique region 27056 27327 - 0/ 5 reads repeat/unique - unitig 113634 created. Annotating repeats in reads for tig 3152/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 0:6331 - contained in read 453598 0- 7930 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3153/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 8306:16273 - contained in read 473626 5227- 18420 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3161/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 13202:14629 - contained in read 186241 6889- 15190 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3162/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5445:12612 - closest 5' read 285210 ( +646) 4799:12480 ( -132) saved region 5445:12612 - closest 3' read 518929 ( -5692) 11137:18064 ( +5452) search for confused edges: discard region 5445:12612 - no confusion in best edges Annotating repeats in reads for tig 3164/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 17021:16468 - contained in read 493699 10079- 23303 thickest edges to the repeat regions: saved region 10053:14462 - closest 5' read 623892 ( +3361) 6692:10937 ( -3525) saved region 10053:14462 - closest 3' read 493700 ( -22) 10075:16843 ( +2381) search for confused edges: discard region 10053:14462 - no confusion in best edges Annotating repeats in reads for tig 3165/113047. Annotated with 92 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11085:15876 - closest 5' read 623340 ( +7245) 3840:14667 ( -1209) saved region 11085:15876 - closest 3' read 184184 ( -108) 11193:18185 ( +2309) search for confused edges: tig 3165 read 623340 pos 3840-14667 IS confused by 3' edge to read 135719 - best edge read 184184 len 3467 erate 0.0395 score 3330.05 - alt edge len 2570 erate 0.0393 score 2469.00 - absdiff 861.05 percdiff 29.6964 tig 3165 read 623340 pos 3840-14667 IS confused by 3' edge to read 155880 - best edge read 184184 len 3467 erate 0.0395 score 3330.05 - alt edge len 2079 erate 0.0387 score 1998.54 - absdiff 1331.51 percdiff 49.9760 tig 3165 read 623340 pos 3840-14667 IS confused by 3' edge to read 274701 - best edge read 184184 len 3467 erate 0.0395 score 3330.05 - alt edge len 1874 erate 0.0349 score 1808.60 - absdiff 1521.46 percdiff 59.2162 tig 3165 read 184184 pos 11193-18185 NOT confused by 5' edge to read 274701 - best edge read 623340 len 3470 erate 0.0395 score 3332.93 - alt edge len 933 erate 0.0288 score 906.13 - absdiff 2426.81 percdiff 114.4972 tig 3165 read 184184 pos 11193-18185 IS confused by 5' edge to read 282154 - best edge read 623340 len 3470 erate 0.0395 score 3332.93 - alt edge len 1368 erate 0.0360 score 1318.75 - absdiff 2014.18 percdiff 86.6001 tig 3165 read 184184 pos 11193-18185 IS confused by 5' edge to read 332860 - best edge read 623340 len 3470 erate 0.0395 score 3332.93 - alt edge len 2260 erate 0.0384 score 2173.22 - absdiff 1159.72 percdiff 42.1245 saved region 11085:15876 - 5 best edges are potentially confused break tig 3165 into up to 3 pieces: 0 10585 unique (length 10585) 10585 16376 repeat (length 5791) 16376 25641 unique (length 9265) Creating Unitig 113635 Creating Unitig 113636 For tig 3165 unique region 0 10585 - 0/ 6 reads repeat/unique - unitig 113635 created. For tig 3165 repeat region 10585 16376 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3165 unique region 16376 25641 - 0/ 15 reads repeat/unique - unitig 113636 created. Annotating repeats in reads for tig 3167/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1951:0 - contained in read 463186 0- 7566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3186/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 1930:4452 - contained in read 54603 0- 6712 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3191/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:2817 - contained in read 722802 0- 7129 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3195/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 7137:5425 - contained in read 483072 0- 6373 thickest edges to the repeat regions: saved region 8816:16685 - closest read 573198 ( +0) 8816:18637 ( +1952) (contained) saved region 8816:16685 - closest 5' read 573198 ( +0) 8816:18637 ( +1952) saved region 8816:16685 - closest 3' read 573198 ( +0) 8816:18637 ( +1952) saved region 17233:18450 - closest read 573198 ( +8417) 8816:18637 ( +187) (contained) saved region 17233:18450 - closest read 8896 ( +7508) 9725:18623 ( +173) (contained) saved region 17233:18450 - closest read 562994 ( +5088) 12145:18623 ( +173) (contained) saved region 17233:18450 - closest read 161911 ( +4421) 12812:18591 ( +141) (contained) saved region 17233:18450 - closest read 161909 ( +4405) 12828:18584 ( +134) (contained) saved region 17233:18450 - closest read 161910 ( +4387) 12846:18581 ( +131) (contained) saved region 17233:18450 - closest read 665512 ( +1813) 15420:18450 ( +0) (contained) saved region 17233:18450 - closest 5' read 573198 ( +8417) 8816:18637 ( +187) saved region 17233:18450 - closest 3' read 573198 ( +8417) 8816:18637 ( +187) search for confused edges: discard region 8816:16685 - no confusion in best edges discard region 17233:18450 - no confusion in best edges Annotating repeats in reads for tig 3208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3214/113047. Annotated with 883 overlaps. Scan reads to discard spanned repeats. discard region 1682:8018 - contained in read 498473 79- 8018 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3224/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3229/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4418:10984 - closest read 239333 ( +174) 4244:11165 ( +181) (contained) saved region 4418:10984 - closest 5' read 239333 ( +174) 4244:11165 ( +181) saved region 4418:10984 - closest 3' read 239333 ( +174) 4244:11165 ( +181) search for confused edges: discard region 4418:10984 - no confusion in best edges Annotating repeats in reads for tig 3232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3235/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4641:7359 - contained in read 514554 26- 7359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3237/113047. Annotated with 67 overlaps. Scan reads to discard spanned repeats. discard region 14765:18099 - contained in read 138644 7748- 18099 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3245/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 14009:14701 - contained in read 17616 5531- 17249 discard region 15243:15935 - contained in read 17616 5531- 17249 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3248/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 14621:17569 - contained in read 521809 0- 20802 discard region 21942:28488 - contained in read 524844 19382- 30627 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3252/113047. Annotated with 447 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6906 - closest 5' read 554187 ( +0) 0:6805 ( -101) saved region 0:6906 - closest 3' read 689836 ( -168) 168:6930 ( +24) search for confused edges: tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 69514 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 610 erate 0.0544 score 576.82 - absdiff 4985.84 percdiff 162.4192 tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 86124 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 1101 erate 0.0633 score 1031.31 - absdiff 4531.35 percdiff 137.4393 tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 238313 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 2547 erate 0.0546 score 2407.93 - absdiff 3154.72 percdiff 79.1590 tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 293555 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 1428 erate 0.0611 score 1340.75 - absdiff 4221.91 percdiff 122.3137 tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 336357 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 1934 erate 0.0389 score 1858.77 - absdiff 3703.89 percdiff 99.8161 tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 556591 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 937 erate 0.0504 score 889.78 - absdiff 4672.88 percdiff 144.8409 tig 3252 read 412480 pos 684-7284 NOT confused by 5' edge to read 641325 - best edge read 554187 len 5973 erate 0.0687 score 5562.65 - alt edge len 1966 erate 0.0479 score 1871.83 - absdiff 3690.83 percdiff 99.2894 discard region 0:6906 - no confusion in best edges Annotating repeats in reads for tig 3260/113047. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 20083:21405 - contained in read 249705 16315- 24301 thickest edges to the repeat regions: saved region 8083:20097 - closest 5' read 438426 ( +0) 8083:17010 ( -3087) saved region 8083:20097 - closest 3' read 423750 ( -5852) 13935:20097 ( +0) search for confused edges: tig 3260 read 280562 pos 8921-15334 IS confused by 5' edge to read 27552 - best edge read 466695 len 4161 erate 0.0191 score 4081.52 - alt edge len 3846 erate 0.0141 score 3791.77 - absdiff 289.75 percdiff 7.3604 tig 3260 read 280562 pos 8921-15334 NOT confused by 5' edge to read 461655 - best edge read 466695 len 4161 erate 0.0191 score 4081.52 - alt edge len 547 erate 0.0627 score 512.70 - absdiff 3568.82 percdiff 155.3611 saved region 8083:20097 - 1 best edges are potentially confused break tig 3260 into up to 3 pieces: 0 7583 unique (length 7583) 7583 20597 repeat (length 13014) 20597 26134 unique (length 5537) Creating Unitig 113637 Creating Unitig 113638 Creating Unitig 113639 For tig 3260 unique region 0 7583 - 0/ 7 reads repeat/unique - unitig 113637 created. For tig 3260 repeat region 7583 20597 - 58/ 0 reads repeat/unique - unitig 113638 created. For tig 3260 unique region 20597 26134 - 0/ 8 reads repeat/unique - unitig 113639 created. Annotating repeats in reads for tig 3261/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 3299:6197 - contained in read 670177 1476- 6205 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3266/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 7282:8450 - contained in read 644920 941- 12883 discard region 11495:13958 - contained in read 314842 5052- 14899 discard region 27016:29204 - contained in read 469315 21256- 30889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3271/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:2288 - contained in read 133048 0- 7523 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3276/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11488:9951 - contained in read 330327 8592- 13001 discard region 12023:11463 - contained in read 330327 8592- 13001 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3280/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3283/113047. Annotated with 117 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11283:19657 - closest 5' read 435964 ( +826) 10457:17767 ( -1890) saved region 11283:19657 - closest 3' read 29455 ( -2792) 14075:19657 ( +0) search for confused edges: tig 3283 read 435964 pos 10457-17767 NOT confused by 3' edge to read 90105 - best edge read 194929 len 6442 erate 0.0139 score 6352.46 - alt edge len 1633 erate 0.0209 score 1598.87 - absdiff 4753.59 percdiff 119.5671 tig 3283 read 435964 pos 10457-17767 NOT confused by 3' edge to read 90106 - best edge read 194929 len 6442 erate 0.0139 score 6352.46 - alt edge len 1878 erate 0.0096 score 1859.97 - absdiff 4492.48 percdiff 109.4070 tig 3283 read 435964 pos 10457-17767 NOT confused by 3' edge to read 418019 - best edge read 194929 len 6442 erate 0.0139 score 6352.46 - alt edge len 661 erate 0.0681 score 615.99 - absdiff 5736.47 percdiff 164.6414 tig 3283 read 194929 pos 11839-18621 NOT confused by 5' edge to read 76172 - best edge read 435964 len 6430 erate 0.0138 score 6341.27 - alt edge len 876 erate 0.0378 score 842.89 - absdiff 5498.38 percdiff 153.0696 tig 3283 read 194929 pos 11839-18621 NOT confused by 5' edge to read 76173 - best edge read 435964 len 6430 erate 0.0138 score 6341.27 - alt edge len 884 erate 0.0408 score 847.93 - absdiff 5493.33 percdiff 152.8218 tig 3283 read 194929 pos 11839-18621 NOT confused by 5' edge to read 76175 - best edge read 435964 len 6430 erate 0.0138 score 6341.27 - alt edge len 881 erate 0.0432 score 842.94 - absdiff 5498.33 percdiff 153.0670 tig 3283 read 194929 pos 11839-18621 NOT confused by 5' edge to read 378481 - best edge read 435964 len 6430 erate 0.0138 score 6341.27 - alt edge len 1810 erate 0.0304 score 1754.98 - absdiff 4586.29 percdiff 113.2943 tig 3283 read 194929 pos 11839-18621 NOT confused by 5' edge to read 378483 - best edge read 435964 len 6430 erate 0.0138 score 6341.27 - alt edge len 1913 erate 0.0359 score 1844.32 - absdiff 4496.94 percdiff 109.8746 tig 3283 read 194929 pos 11839-18621 IS confused by 5' edge to read 463730 - best edge read 435964 len 6430 erate 0.0138 score 6341.27 - alt edge len 4925 erate 0.0104 score 4873.78 - absdiff 1467.49 percdiff 26.1700 tig 3283 read 611514 pos 11911-19188 NOT confused by 3' edge to read 76172 - best edge read 194929 len 6636 erate 0.0393 score 6375.21 - alt edge len 868 erate 0.0346 score 837.97 - absdiff 5537.24 percdiff 153.5313 tig 3283 read 611514 pos 11911-19188 NOT confused by 3' edge to read 76173 - best edge read 194929 len 6636 erate 0.0393 score 6375.21 - alt edge len 876 erate 0.0377 score 842.97 - absdiff 5532.23 percdiff 153.2860 tig 3283 read 611514 pos 11911-19188 NOT confused by 3' edge to read 76175 - best edge read 194929 len 6636 erate 0.0393 score 6375.21 - alt edge len 873 erate 0.0401 score 837.99 - absdiff 5537.21 percdiff 153.5300 tig 3283 read 611514 pos 11911-19188 NOT confused by 5' edge to read 90105 - best edge read 634974 len 5003 erate 0.0210 score 4897.94 - alt edge len 2436 erate 0.0321 score 2357.80 - absdiff 2540.13 percdiff 70.0172 tig 3283 read 611514 pos 11911-19188 NOT confused by 5' edge to read 90106 - best edge read 634974 len 5003 erate 0.0210 score 4897.94 - alt edge len 2681 erate 0.0209 score 2624.97 - absdiff 2272.97 percdiff 60.4280 tig 3283 read 611514 pos 11911-19188 NOT confused by 3' edge to read 378481 - best edge read 194929 len 6636 erate 0.0393 score 6375.21 - alt edge len 1796 erate 0.0262 score 1748.94 - absdiff 4626.26 percdiff 113.8891 tig 3283 read 611514 pos 11911-19188 NOT confused by 3' edge to read 378483 - best edge read 194929 len 6636 erate 0.0393 score 6375.21 - alt edge len 1899 erate 0.0327 score 1836.90 - absdiff 4538.30 percdiff 110.5271 tig 3283 read 611514 pos 11911-19188 IS confused by 3' edge to read 463730 - best edge read 194929 len 6636 erate 0.0393 score 6375.21 - alt edge len 4901 erate 0.0118 score 4843.17 - absdiff 1532.04 percdiff 27.3130 tig 3283 read 634974 pos 13321-19434 NOT confused by 3' edge to read 397689 - best edge read 611514 len 5066 erate 0.0210 score 4959.61 - alt edge len 2241 erate 0.0288 score 2176.46 - absdiff 2783.15 percdiff 78.0024 tig 3283 read 634974 pos 13321-19434 NOT confused by 3' edge to read 463730 - best edge read 611514 len 5066 erate 0.0210 score 4959.61 - alt edge len 2681 erate 0.0086 score 2657.94 - absdiff 2301.67 percdiff 60.4307 tig 3283 read 695754 pos 16404-24137 IS confused by 5' edge to read 587540 - best edge read 634974 len 2821 erate 0.0523 score 2673.46 - alt edge len 1292 erate 0.0588 score 1216.03 - absdiff 1457.43 percdiff 74.9420 tig 3283 read 695754 pos 16404-24137 IS confused by 5' edge to read 587541 - best edge read 634974 len 2821 erate 0.0523 score 2673.46 - alt edge len 1293 erate 0.0563 score 1220.20 - absdiff 1453.26 percdiff 74.6473 saved region 11283:19657 - 4 best edges are potentially confused break tig 3283 into up to 3 pieces: 0 10783 unique (length 10783) 10783 20157 repeat (length 9374) 20157 24243 unique (length 4086) Creating Unitig 113640 Creating Unitig 113641 Creating Unitig 113642 For tig 3283 unique region 0 10783 - 0/ 13 reads repeat/unique - unitig 113640 created. For tig 3283 repeat region 10783 20157 - 66/ 0 reads repeat/unique - unitig 113641 created. For tig 3283 unique region 20157 24243 - 0/ 9 reads repeat/unique - unitig 113642 created. Annotating repeats in reads for tig 3285/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11241:12076 - closest read 691635 ( +0) 11241:19256 ( +7180) (contained) saved region 11241:12076 - closest 5' read 691635 ( +0) 11241:19256 ( +7180) saved region 11241:12076 - closest 3' read 691635 ( +0) 11241:19256 ( +7180) search for confused edges: discard region 11241:12076 - no confusion in best edges Annotating repeats in reads for tig 3288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3289/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7654:11167 - contained in read 334062 5632- 12306 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3292/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 25608:26170 - closest read 269988 ( +0) 25608:31604 ( +5434) (contained) saved region 25608:26170 - closest 5' read 269988 ( +0) 25608:31604 ( +5434) saved region 25608:26170 - closest 3' read 269988 ( +0) 25608:31604 ( +5434) search for confused edges: discard region 25608:26170 - no confusion in best edges Annotating repeats in reads for tig 3295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3322/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 9796:13756 - contained in read 280616 4775- 15114 thickest edges to the repeat regions: saved region 3513:7740 - closest read 474275 ( +0) 3513:8597 ( +857) (contained) saved region 3513:7740 - closest 5' read 474275 ( +0) 3513:8597 ( +857) saved region 3513:7740 - closest 3' read 474275 ( +0) 3513:8597 ( +857) search for confused edges: tig 3322 read 442954 pos 0-7218 NOT confused by 5' edge to read 683858 - best edge read 474569 len 3403 erate 0.0194 score 3336.98 - alt edge len 925 erate 0.0380 score 889.85 - absdiff 2447.13 percdiff 115.7904 tig 3322 read 71728 pos 4757-13156 IS confused by 5' edge to read 504577 - best edge read 442954 len 2357 erate 0.0248 score 2298.55 - alt edge len 1617 erate 0.0251 score 1576.41 - absdiff 722.13 percdiff 37.2718 saved region 3513:7740 - 1 best edges are potentially confused break tig 3322 into up to 3 pieces: 0 3013 unique (length 3013) 3013 8240 repeat (length 5227) 8240 24148 unique (length 15908) Creating Unitig 113643 Creating Unitig 113644 Creating Unitig 113645 For tig 3322 unique region 0 3013 - 0/ 1 reads repeat/unique - unitig 113643 created. For tig 3322 repeat region 3013 8240 - 4/ 0 reads repeat/unique - unitig 113645 created. For tig 3322 unique region 8240 24148 - 0/ 53 reads repeat/unique - unitig 113644 created. Annotating repeats in reads for tig 3332/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7734:9586 - closest 5' read 691760 ( +3051) 4683:9225 ( -361) saved region 7734:9586 - closest 3' read 226810 ( -86) 7820:13460 ( +3874) search for confused edges: tig 3332 read 691760 pos 4683-9225 IS confused by 5' edge to read 69763 - best edge read 226810 len 1387 erate 0.0617 score 1301.42 - alt edge len 571 erate 0.0655 score 533.60 - absdiff 767.82 percdiff 83.6854 saved region 7734:9586 - 1 best edges are potentially confused break tig 3332 into up to 3 pieces: 0 7234 unique (length 7234) 7234 10086 repeat (length 2852) 10086 13538 unique (length 3452) Creating Unitig 113646 Creating Unitig 113647 Creating Unitig 113648 For tig 3332 unique region 0 7234 - 0/ 14 reads repeat/unique - unitig 113646 created. For tig 3332 repeat region 7234 10086 - 1/ 0 reads repeat/unique - unitig 113648 created. For tig 3332 unique region 10086 13538 - 0/ 3 reads repeat/unique - unitig 113647 created. Annotating repeats in reads for tig 3334/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3621:8634 - closest read 276630 ( +1075) 2546:8634 ( +0) (contained) saved region 3621:8634 - closest 5' read 276630 ( +1075) 2546:8634 ( +0) saved region 3621:8634 - closest 3' read 276630 ( +1075) 2546:8634 ( +0) search for confused edges: discard region 3621:8634 - no confusion in best edges Annotating repeats in reads for tig 3335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3343/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 31522:32712 - contained in read 507186 27437- 32712 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3344/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 137:7142 - closest 5' read 275728 ( +137) 0:6719 ( -423) saved region 137:7142 - closest 3' read 216819 ( -5971) 6108:12114 ( +4972) search for confused edges: discard region 137:7142 - no confusion in best edges Annotating repeats in reads for tig 3349/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6459:13264 - closest read 620580 ( +42) 6417:13264 ( +0) (contained) saved region 6459:13264 - closest 5' read 620580 ( +42) 6417:13264 ( +0) saved region 6459:13264 - closest 3' read 620580 ( +42) 6417:13264 ( +0) search for confused edges: discard region 6459:13264 - no confusion in best edges Annotating repeats in reads for tig 3354/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6725:5335 - contained in read 584686 0- 6747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3355/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 9285:17655 - contained in read 687329 5305- 17967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3361/113047. Annotated with 126 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 398:12200 - closest 5' read 354618 ( +398) 0:11058 ( -1142) saved region 398:12200 - closest 3' read 188028 ( -3729) 4127:12200 ( +0) search for confused edges: tig 3361 read 354618 pos 0-11058 IS confused by 3' edge to read 31422 - best edge read 702016 len 9585 erate 0.0121 score 9469.02 - alt edge len 9506 erate 0.0126 score 9386.22 - absdiff 82.80 percdiff 0.8782 tig 3361 read 354618 pos 0-11058 IS confused by 3' edge to read 31423 - best edge read 702016 len 9585 erate 0.0121 score 9469.02 - alt edge len 9500 erate 0.0114 score 9391.70 - absdiff 77.32 percdiff 0.8199 tig 3361 read 354618 pos 0-11058 NOT confused by 3' edge to read 526383 - best edge read 702016 len 9585 erate 0.0121 score 9469.02 - alt edge len 3650 erate 0.0247 score 3559.85 - absdiff 5909.18 percdiff 90.7090 saved region 398:12200 - 2 best edges are potentially confused break tig 3361 into up to 2 pieces: 0 12700 repeat (length 12700) 12700 26878 unique (length 14178) Creating Unitig 113649 Creating Unitig 113650 For tig 3361 repeat region 0 12700 - 17/ 0 reads repeat/unique - unitig 113649 created. For tig 3361 unique region 12700 26878 - 0/ 18 reads repeat/unique - unitig 113650 created. Annotating repeats in reads for tig 3364/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:3404 - closest read 310094 ( +0) 0:3714 ( +310) (contained) saved region 0:3404 - closest 5' read 310094 ( +0) 0:3714 ( +310) saved region 0:3404 - closest 3' read 310094 ( +0) 0:3714 ( +310) search for confused edges: discard region 0:3404 - no confusion in best edges Annotating repeats in reads for tig 3365/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 15145:14288 - contained in read 316669 8288- 15145 discard region 15145:14360 - contained in read 316669 8288- 15145 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3371/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:1490 - contained in read 598700 0- 7775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3376/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:4623 - contained in read 221668 0- 6181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3377/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8532:12402 - closest 5' read 595136 ( +159) 8373:12335 ( -67) saved region 8532:12402 - closest 3' read 471069 ( -934) 9466:13200 ( +798) search for confused edges: tig 3377 read 595136 pos 8373-12335 IS confused by 3' edge to read 489625 - best edge read 256740 len 3686 erate 0.0338 score 3561.41 - alt edge len 1669 erate 0.0324 score 1614.92 - absdiff 1946.49 percdiff 75.2072 tig 3377 read 595136 pos 8373-12335 IS confused by 3' edge to read 489628 - best edge read 256740 len 3686 erate 0.0338 score 3561.41 - alt edge len 1670 erate 0.0300 score 1619.90 - absdiff 1941.51 percdiff 74.9429 tig 3377 read 256740 pos 8616-12369 IS confused by 5' edge to read 489625 - best edge read 471069 len 2874 erate 0.0303 score 2786.92 - alt edge len 1701 erate 0.0300 score 1649.97 - absdiff 1136.95 percdiff 51.2498 tig 3377 read 256740 pos 8616-12369 IS confused by 5' edge to read 489628 - best edge read 471069 len 2874 erate 0.0303 score 2786.92 - alt edge len 1702 erate 0.0288 score 1652.98 - absdiff 1133.94 percdiff 51.0793 saved region 8532:12402 - 4 best edges are potentially confused break tig 3377 into up to 3 pieces: 0 8032 unique (length 8032) 8032 12902 repeat (length 4870) 12902 14123 unique (length 1221) Creating Unitig 113651 Creating Unitig 113652 Creating Unitig 113653 For tig 3377 unique region 0 8032 - 0/ 10 reads repeat/unique - unitig 113651 created. For tig 3377 repeat region 8032 12902 - 8/ 0 reads repeat/unique - unitig 113652 created. For tig 3377 unique region 12902 14123 - 0/ 4 reads repeat/unique - unitig 113653 created. Annotating repeats in reads for tig 3378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3389/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 741:6 - contained in read 187167 0- 12925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3414/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 19951:20780 - contained in read 132878 6640- 25407 discard region 22088:21098 - contained in read 132878 6640- 25407 discard region 22088:21209 - contained in read 132878 6640- 25407 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3422/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2634:5326 - contained in read 628982 0- 6677 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3438/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3445/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14907:21676 - closest 5' read 43629 ( +6625) 8282:20147 ( -1529) saved region 14907:21676 - closest 3' read 373504 ( -240) 15147:22291 ( +615) search for confused edges: discard region 14907:21676 - no confusion in best edges Annotating repeats in reads for tig 3455/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5510:10294 - closest read 173929 ( +359) 5151:10294 ( +0) (contained) saved region 5510:10294 - closest 5' read 173929 ( +359) 5151:10294 ( +0) saved region 5510:10294 - closest 3' read 173929 ( +359) 5151:10294 ( +0) saved region 10254:15289 - closest 5' read 514989 ( +4551) 5703:13220 ( -2069) saved region 10254:15289 - closest 3' read 20357 ( -510) 10764:19600 ( +4311) search for confused edges: tig 3455 read 382499 pos 2986-9895 NOT confused by 3' edge to read 109491 - best edge read 514989 len 4168 erate 0.0241 score 4067.55 - alt edge len 716 erate 0.0549 score 676.69 - absdiff 3390.86 percdiff 142.9463 tig 3455 read 382499 pos 2986-9895 NOT confused by 3' edge to read 109492 - best edge read 514989 len 4168 erate 0.0241 score 4067.55 - alt edge len 709 erate 0.0582 score 667.74 - absdiff 3399.82 percdiff 143.5949 tig 3455 read 382499 pos 2986-9895 NOT confused by 3' edge to read 263737 - best edge read 514989 len 4168 erate 0.0241 score 4067.55 - alt edge len 939 erate 0.0543 score 888.01 - absdiff 3179.54 percdiff 128.3220 tig 3455 read 382499 pos 2986-9895 IS confused by 3' edge to read 497301 - best edge read 514989 len 4168 erate 0.0241 score 4067.55 - alt edge len 3698 erate 0.0192 score 3627.00 - absdiff 440.55 percdiff 11.4510 tig 3455 read 382499 pos 2986-9895 IS confused by 3' edge to read 665926 - best edge read 514989 len 4168 erate 0.0241 score 4067.55 - alt edge len 4103 erate 0.0453 score 3917.13 - absdiff 150.42 percdiff 3.7676 tig 3455 read 382499 pos 2986-9895 NOT confused by 3' edge to read 686783 - best edge read 514989 len 4168 erate 0.0241 score 4067.55 - alt edge len 1976 erate 0.0721 score 1833.53 - absdiff 2234.02 percdiff 75.7156 saved region 5510:10294 - 2 best edges are potentially confused discard region 10254:15289 - no confusion in best edges break tig 3455 into up to 3 pieces: 0 5010 unique (length 5010) 5010 10794 repeat (length 5784) 10794 21239 unique (length 10445) Creating Unitig 113654 Creating Unitig 113655 Creating Unitig 113656 For tig 3455 unique region 0 5010 - 0/ 15 reads repeat/unique - unitig 113654 created. For tig 3455 repeat region 5010 10794 - 2/ 0 reads repeat/unique - unitig 113655 created. For tig 3455 unique region 10794 21239 - 0/ 6 reads repeat/unique - unitig 113656 created. Annotating repeats in reads for tig 3458/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3461/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7141:7943 - contained in read 383824 1853- 7943 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3463/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 6898:8134 - contained in read 591266 4807- 13795 thickest edges to the repeat regions: saved region 4688:6540 - closest read 116850 ( +0) 4688:6540 ( +0) (contained) saved region 4688:6540 - closest 5' read 116850 ( +0) 4688:6540 ( +0) saved region 4688:6540 - closest 3' read 116850 ( +0) 4688:6540 ( +0) search for confused edges: discard region 4688:6540 - no confusion in best edges Annotating repeats in reads for tig 3471/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3393:4150 - contained in read 655771 0- 6576 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3477/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3478/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 1995:4203 - contained in read 180664 0- 9946 discard region 9502:14932 - contained in read 560575 8882- 14932 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3491/113047. Annotated with 115 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7350:8987 - closest 5' read 445050 ( +5610) 1740:8782 ( -205) saved region 7350:8987 - closest 3' read 281299 ( -144) 7494:14357 ( +5370) search for confused edges: tig 3491 read 281300 pos 7516-15462 IS confused by 5' edge to read 49580 - best edge read 445049 len 1260 erate 0.0452 score 1203.05 - alt edge len 1423 erate 0.0426 score 1362.38 - absdiff 159.33 percdiff 12.4215 saved region 7350:8987 - 1 best edges are potentially confused break tig 3491 into up to 3 pieces: 0 6850 unique (length 6850) 6850 9487 repeat (length 2637) 9487 19249 unique (length 9762) Creating Unitig 113657 Creating Unitig 113658 For tig 3491 unique region 0 6850 - 0/ 7 reads repeat/unique - unitig 113657 created. For tig 3491 repeat region 6850 9487 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3491 unique region 9487 19249 - 0/ 21 reads repeat/unique - unitig 113658 created. Annotating repeats in reads for tig 3508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3517/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 0:2184 - contained in read 644202 0- 6246 discard region 3834:4551 - contained in read 644202 0- 6246 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3518/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3140:4317 - contained in read 683156 0- 6537 discard region 5424:9543 - contained in read 690921 84- 10928 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3524/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 7215:5260 - contained in read 663126 0- 6351 discard region 7701:5644 - contained in read 663126 0- 6351 thickest edges to the repeat regions: saved region 9014:10382 - closest read 641521 ( +3754) 5260:10382 ( +0) (contained) saved region 9014:10382 - closest 5' read 641521 ( +3754) 5260:10382 ( +0) saved region 9014:10382 - closest 3' read 641521 ( +3754) 5260:10382 ( +0) search for confused edges: discard region 9014:10382 - no confusion in best edges Annotating repeats in reads for tig 3528/113047. Annotated with 71 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12601:14617 - closest 5' read 712925 ( +8227) 4374:14601 ( -16) saved region 12601:14617 - closest 3' read 52905 ( -30) 12631:20340 ( +5723) search for confused edges: tig 3528 read 52906 pos 12632-20342 IS confused by 5' edge to read 43282 - best edge read 712925 len 1949 erate 0.0499 score 1851.74 - alt edge len 554 erate 0.0567 score 522.59 - absdiff 1329.16 percdiff 111.9604 tig 3528 read 52906 pos 12632-20342 IS confused by 5' edge to read 295741 - best edge read 712925 len 1949 erate 0.0499 score 1851.74 - alt edge len 710 erate 0.0629 score 665.34 - absdiff 1186.40 percdiff 94.2681 tig 3528 read 52906 pos 12632-20342 IS confused by 5' edge to read 312697 - best edge read 712925 len 1949 erate 0.0499 score 1851.74 - alt edge len 557 erate 0.0610 score 523.02 - absdiff 1328.72 percdiff 111.9033 saved region 12601:14617 - 3 best edges are potentially confused break tig 3528 into up to 3 pieces: 0 12101 unique (length 12101) 12101 15117 repeat (length 3016) 15117 23211 unique (length 8094) Creating Unitig 113659 Creating Unitig 113660 Creating Unitig 113661 For tig 3528 unique region 0 12101 - 0/ 10 reads repeat/unique - unitig 113659 created. For tig 3528 repeat region 12101 15117 - 5/ 0 reads repeat/unique - unitig 113661 created. For tig 3528 unique region 15117 23211 - 0/ 11 reads repeat/unique - unitig 113660 created. Annotating repeats in reads for tig 3533/113047. Annotated with 619 overlaps. Scan reads to discard spanned repeats. discard region 0:5367 - contained in read 625338 0- 6592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3538/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 15303:18898 - contained in read 109741 14608- 21130 discard region 21823:22588 - contained in read 704904 15426- 27599 thickest edges to the repeat regions: saved region 4892:7504 - closest 5' read 149167 ( +979) 3913:7227 ( -277) saved region 4892:7504 - closest 3' read 408150 ( -18) 4910:13247 ( +5743) search for confused edges: discard region 4892:7504 - no confusion in best edges Annotating repeats in reads for tig 3542/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6597:7358 - closest read 698163 ( +5184) 1413:7455 ( +97) (contained) saved region 6597:7358 - closest read 47810 ( +0) 6597:11830 ( +4472) (contained) saved region 6597:7358 - closest 5' read 47810 ( +0) 6597:11830 ( +4472) saved region 6597:7358 - closest 3' read 698163 ( +5184) 1413:7455 ( +97) search for confused edges: discard region 6597:7358 - no confusion in best edges Annotating repeats in reads for tig 3549/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3554/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 11567:10976 - contained in read 558481 6827- 11533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3564/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6087:6676 - contained in read 683554 2760- 7947 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3566/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 7111:11312 - contained in read 196183 3599- 12046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3568/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3569/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3570/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3571/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3575/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 18326:17579 - contained in read 300215 10502- 18326 discard region 18326:17580 - contained in read 300215 10502- 18326 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3576/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 8162:9429 - contained in read 200461 4548- 10142 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3578/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3579/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3580/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3582/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5053:8408 - closest read 200829 ( +2827) 2226:8438 ( +30) (contained) saved region 5053:8408 - closest read 369206 ( +436) 4617:13164 ( +4756) (contained) saved region 5053:8408 - closest read 625858 ( +0) 5053:10117 ( +1709) (contained) saved region 5053:8408 - closest 5' read 369206 ( +436) 4617:13164 ( +4756) saved region 5053:8408 - closest 3' read 200829 ( +2827) 2226:8438 ( +30) search for confused edges: discard region 5053:8408 - no confusion in best edges Annotating repeats in reads for tig 3583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3585/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3586/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 10491:11937 - contained in read 597163 7016- 11937 thickest edges to the repeat regions: saved region 6973:7843 - closest read 16431 ( +6973) 0:7843 ( +0) (contained) saved region 6973:7843 - closest 5' read 16431 ( +6973) 0:7843 ( +0) saved region 6973:7843 - closest 3' read 16431 ( +6973) 0:7843 ( +0) search for confused edges: tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 86020 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 528 erate 0.0701 score 490.99 - absdiff 275.00 percdiff 43.7561 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 86021 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 566 erate 0.0601 score 531.98 - absdiff 234.01 percdiff 36.0572 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 86022 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 559 erate 0.0626 score 524.01 - absdiff 241.98 percdiff 37.5168 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 205457 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 532 erate 0.0489 score 505.99 - absdiff 260.00 percdiff 40.8820 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 223741 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 602 erate 0.0498 score 572.02 - absdiff 193.97 percdiff 28.9937 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 223743 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 603 erate 0.0580 score 568.03 - absdiff 197.96 percdiff 29.6793 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 396429 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 657 erate 0.0628 score 615.74 - absdiff 150.25 percdiff 21.7480 tig 3586 read 16432 pos 4-7838 IS confused by 3' edge to read 552907 - best edge read 597163 len 811 erate 0.0555 score 765.99 - alt edge len 721 erate 0.0555 score 680.98 - absdiff 85.00 percdiff 11.7493 saved region 6973:7843 - 8 best edges are potentially confused break tig 3586 into up to 3 pieces: 0 6473 unique (length 6473) 6473 8343 repeat (length 1870) 8343 11937 unique (length 3594) Creating Unitig 113662 Creating Unitig 113663 For tig 3586 unique region 0 6473 - 0/ 12 reads repeat/unique - unitig 113662 created. For tig 3586 repeat region 6473 8343 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3586 unique region 8343 11937 - 0/ 2 reads repeat/unique - unitig 113663 created. Annotating repeats in reads for tig 3587/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2511:3122 - contained in read 16820 0- 6359 thickest edges to the repeat regions: saved region 4254:7485 - closest read 247919 ( +0) 4254:8555 ( +1070) (contained) saved region 4254:7485 - closest 5' read 247919 ( +0) 4254:8555 ( +1070) saved region 4254:7485 - closest 3' read 247919 ( +0) 4254:8555 ( +1070) search for confused edges: discard region 4254:7485 - no confusion in best edges Annotating repeats in reads for tig 3590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3591/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3600/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2043:1022 - contained in read 89747 0- 8029 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3601/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 10219:15043 - contained in read 267562 3321- 15043 thickest edges to the repeat regions: saved region 3321:7186 - closest read 267562 ( +0) 3321:15043 ( +7857) (contained) saved region 3321:7186 - closest 5' read 267562 ( +0) 3321:15043 ( +7857) saved region 3321:7186 - closest 3' read 267562 ( +0) 3321:15043 ( +7857) search for confused edges: discard region 3321:7186 - no confusion in best edges Annotating repeats in reads for tig 3602/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3604/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 9398:10497 - contained in read 680114 2424- 12251 thickest edges to the repeat regions: saved region 13225:17374 - closest read 93576 ( +0) 13225:18246 ( +872) (contained) saved region 13225:17374 - closest 5' read 93576 ( +0) 13225:18246 ( +872) saved region 13225:17374 - closest 3' read 93576 ( +0) 13225:18246 ( +872) search for confused edges: tig 3604 read 543427 pos 9044-17372 NOT confused by 3' edge to read 29035 - best edge read 93576 len 4096 erate 0.0296 score 3974.76 - alt edge len 851 erate 0.0284 score 826.83 - absdiff 3147.93 percdiff 131.1202 tig 3604 read 543427 pos 9044-17372 IS confused by 3' edge to read 82076 - best edge read 93576 len 4096 erate 0.0296 score 3974.76 - alt edge len 2323 erate 0.0738 score 2151.56 - absdiff 1823.20 percdiff 59.5201 tig 3604 read 543427 pos 9044-17372 NOT confused by 3' edge to read 511697 - best edge read 93576 len 4096 erate 0.0296 score 3974.76 - alt edge len 575 erate 0.0667 score 536.65 - absdiff 3438.11 percdiff 152.4186 tig 3604 read 543427 pos 9044-17372 NOT confused by 3' edge to read 511700 - best edge read 93576 len 4096 erate 0.0296 score 3974.76 - alt edge len 582 erate 0.0636 score 544.98 - absdiff 3429.77 percdiff 151.7685 tig 3604 read 543427 pos 9044-17372 IS confused by 3' edge to read 674864 - best edge read 93576 len 4096 erate 0.0296 score 3974.76 - alt edge len 2258 erate 0.0468 score 2152.33 - absdiff 1822.43 percdiff 59.4878 tig 3604 read 543427 pos 9044-17372 IS confused by 3' edge to read 674865 - best edge read 93576 len 4096 erate 0.0296 score 3974.76 - alt edge len 4057 erate 0.0393 score 3897.56 - absdiff 77.20 percdiff 1.9613 saved region 13225:17374 - 3 best edges are potentially confused break tig 3604 into up to 3 pieces: 0 12725 unique (length 12725) 12725 17874 repeat (length 5149) 17874 18246 unique (length 372) Creating Unitig 113664 Creating Unitig 113665 Creating Unitig 113666 For tig 3604 unique region 0 12725 - 0/ 17 reads repeat/unique - unitig 113664 created. For tig 3604 repeat region 12725 17874 - 22/ 0 reads repeat/unique - unitig 113665 created. For tig 3604 unique region 17874 18246 - 0/ 1 reads repeat/unique - unitig 113666 created. Annotating repeats in reads for tig 3612/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 24740:28387 - contained in read 30274 18274- 30664 discard region 29482:28527 - contained in read 30274 18274- 30664 thickest edges to the repeat regions: saved region 18078:22132 - closest 5' read 382802 ( +4985) 13093:21073 ( -1059) saved region 18078:22132 - closest 3' read 30274 ( -196) 18274:30664 ( +8532) search for confused edges: discard region 18078:22132 - no confusion in best edges Annotating repeats in reads for tig 3613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3614/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3615/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3618/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:4255 - contained in read 474900 0- 8226 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3625/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3629/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 9015:11767 - contained in read 617719 1975- 12782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3630/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3631/113047. Annotated with 699 overlaps. Scan reads to discard spanned repeats. discard region 7502:10161 - contained in read 594827 1524- 18940 discard region 13249:19662 - contained in read 594828 8272- 19662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3635/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3638/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5717 - closest 5' read 674908 ( +0) 0:5383 ( -334) saved region 0:5717 - closest 3' read 485217 ( -10) 10:10508 ( +4791) search for confused edges: discard region 0:5717 - no confusion in best edges Annotating repeats in reads for tig 3639/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3640/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10463:9696 - contained in read 598137 4641- 10358 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3645/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5255:10437 - closest 5' read 62528 ( +1906) 3349:10077 ( -360) saved region 5255:10437 - closest 3' read 204970 ( -1310) 6565:14861 ( +4424) search for confused edges: tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 116621 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 662 erate 0.0369 score 637.57 - absdiff 629.02 percdiff 66.0675 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 116624 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 716 erate 0.0367 score 689.72 - absdiff 576.87 percdiff 58.9748 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 122362 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 905 erate 0.0619 score 848.98 - absdiff 417.61 percdiff 39.4795 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 156474 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 798 erate 0.0369 score 768.55 - absdiff 498.03 percdiff 48.9434 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 160656 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 756 erate 0.0346 score 729.84 - absdiff 536.75 percdiff 53.7705 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 243513 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 897 erate 0.0538 score 848.74 - absdiff 417.85 percdiff 39.5065 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 351850 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 696 erate 0.0409 score 667.53 - absdiff 599.05 percdiff 61.9459 tig 3645 read 649243 pos 8399-16693 IS confused by 5' edge to read 532080 - best edge read 280443 len 1359 erate 0.0680 score 1266.59 - alt edge len 533 erate 0.0376 score 512.96 - absdiff 753.63 percdiff 84.6989 saved region 5255:10437 - 8 best edges are potentially confused break tig 3645 into up to 3 pieces: 0 4755 unique (length 4755) 4755 10937 repeat (length 6182) 10937 18702 unique (length 7765) Creating Unitig 113667 Creating Unitig 113668 Creating Unitig 113669 For tig 3645 unique region 0 4755 - 0/ 5 reads repeat/unique - unitig 113667 created. For tig 3645 repeat region 4755 10937 - 7/ 0 reads repeat/unique - unitig 113668 created. For tig 3645 unique region 10937 18702 - 0/ 13 reads repeat/unique - unitig 113669 created. Annotating repeats in reads for tig 3648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3650/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:934 - contained in read 12218 0- 6722 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3655/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3662/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3666/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3667/113047. Annotated with 1286 overlaps. Scan reads to discard spanned repeats. discard region 0:4690 - contained in read 225032 0- 10834 discard region 5445:10318 - contained in read 225032 0- 10834 discard region 17361:18429 - contained in read 627788 12554- 18429 thickest edges to the repeat regions: saved region 11947:16231 - closest 5' read 176192 ( +825) 11122:15967 ( -264) saved region 11947:16231 - closest 3' read 627792 ( -523) 12470:18373 ( +2142) search for confused edges: tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 104540 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 2739 erate 0.0358 score 2640.94 - absdiff 737.24 percdiff 24.4967 tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 120302 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 1463 erate 0.0569 score 1379.76 - absdiff 1998.43 percdiff 84.0041 tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 123102 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 3018 erate 0.0599 score 2837.22 - absdiff 540.97 percdiff 17.4073 tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 123103 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 2942 erate 0.0684 score 2740.77 - absdiff 637.42 percdiff 20.8343 tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 146597 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 1483 erate 0.0600 score 1394.02 - absdiff 1984.17 percdiff 83.1552 tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 352781 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 2063 erate 0.0656 score 1927.67 - absdiff 1450.52 percdiff 54.6762 tig 3667 read 176192 pos 11122-15967 IS confused by 5' edge to read 576386 - best edge read 627789 len 3537 erate 0.0449 score 3378.19 - alt edge len 2955 erate 0.0447 score 2822.91 - absdiff 555.28 percdiff 17.9090 saved region 11947:16231 - 7 best edges are potentially confused break tig 3667 into up to 3 pieces: 0 11447 unique (length 11447) 11447 16731 repeat (length 5284) 16731 18429 unique (length 1698) Creating Unitig 113670 Creating Unitig 113671 Creating Unitig 113672 For tig 3667 unique region 0 11447 - 0/ 33 reads repeat/unique - unitig 113670 created. For tig 3667 repeat region 11447 16731 - 7/ 0 reads repeat/unique - unitig 113671 created. For tig 3667 unique region 16731 18429 - 0/ 6 reads repeat/unique - unitig 113672 created. Annotating repeats in reads for tig 3668/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 12716:14345 - contained in read 462221 10148- 15011 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3672/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5897:5210 - contained in read 532032 0- 6338 discard region 9341:10492 - contained in read 521373 5126- 13787 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3675/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3678/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3683/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:693 - contained in read 60774 0- 6587 discard region 1429:2240 - contained in read 60774 0- 6587 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3686/113047. Annotated with 104 overlaps. Scan reads to discard spanned repeats. discard region 4338:6478 - contained in read 295496 0- 8625 discard region 17931:18905 - contained in read 423645 13414- 20551 thickest edges to the repeat regions: saved region 10171:11822 - closest 5' read 644866 ( +6686) 3485:11789 ( -33) saved region 10171:11822 - closest 3' read 43882 ( -487) 10658:18905 ( +7083) search for confused edges: tig 3686 read 43882 pos 10658-18905 IS confused by 5' edge to read 55268 - best edge read 644866 len 1098 erate 0.0512 score 1041.78 - alt edge len 1063 erate 0.0434 score 1016.87 - absdiff 24.92 percdiff 2.4207 tig 3686 read 43882 pos 10658-18905 IS confused by 5' edge to read 55271 - best edge read 644866 len 1098 erate 0.0512 score 1041.78 - alt edge len 1062 erate 0.0426 score 1016.76 - absdiff 25.02 percdiff 2.4312 tig 3686 read 43882 pos 10658-18905 IS confused by 5' edge to read 311096 - best edge read 644866 len 1098 erate 0.0512 score 1041.78 - alt edge len 1096 erate 0.0474 score 1044.05 - absdiff 2.27 percdiff 0.2174 saved region 10171:11822 - 3 best edges are potentially confused break tig 3686 into up to 3 pieces: 0 9671 unique (length 9671) 9671 12322 repeat (length 2651) 12322 24876 unique (length 12554) Creating Unitig 113673 Creating Unitig 113674 Creating Unitig 113675 For tig 3686 unique region 0 9671 - 0/ 20 reads repeat/unique - unitig 113673 created. For tig 3686 repeat region 9671 12322 - 7/ 0 reads repeat/unique - unitig 113674 created. For tig 3686 unique region 12322 24876 - 0/ 18 reads repeat/unique - unitig 113675 created. Annotating repeats in reads for tig 3687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3690/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 0:1712 - contained in read 220381 0- 11928 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3691/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9623:6984 - contained in read 2367 3502- 8344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3692/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 28943:31295 - contained in read 55019 21971- 35311 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3693/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7674 - closest read 207510 ( +0) 0:8016 ( +342) (contained) saved region 0:7674 - closest 5' read 207510 ( +0) 0:8016 ( +342) saved region 0:7674 - closest 3' read 207510 ( +0) 0:8016 ( +342) search for confused edges: discard region 0:7674 - no confusion in best edges Annotating repeats in reads for tig 3695/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 804:5895 - closest read 592713 ( +804) 0:5895 ( +0) (contained) saved region 804:5895 - closest 5' read 592713 ( +804) 0:5895 ( +0) saved region 804:5895 - closest 3' read 592713 ( +804) 0:5895 ( +0) search for confused edges: tig 3695 read 631529 pos 952-9232 NOT confused by 3' edge to read 54028 - best edge read 592713 len 4881 erate 0.0322 score 4723.83 - alt edge len 2375 erate 0.0267 score 2311.59 - absdiff 2412.24 percdiff 68.5743 tig 3695 read 631529 pos 952-9232 IS confused by 3' edge to read 129780 - best edge read 592713 len 4881 erate 0.0322 score 4723.83 - alt edge len 4639 erate 0.0128 score 4579.62 - absdiff 144.21 percdiff 3.1002 tig 3695 read 631529 pos 952-9232 IS confused by 3' edge to read 146700 - best edge read 592713 len 4881 erate 0.0322 score 4723.83 - alt edge len 4656 erate 0.0078 score 4619.68 - absdiff 104.15 percdiff 2.2293 tig 3695 read 631529 pos 952-9232 NOT confused by 3' edge to read 465084 - best edge read 592713 len 4881 erate 0.0322 score 4723.83 - alt edge len 1918 erate 0.0384 score 1844.35 - absdiff 2879.48 percdiff 87.6798 tig 3695 read 631529 pos 952-9232 IS confused by 3' edge to read 668731 - best edge read 592713 len 4881 erate 0.0322 score 4723.83 - alt edge len 4520 erate 0.0044 score 4500.11 - absdiff 223.72 percdiff 4.8508 tig 3695 read 631529 pos 952-9232 IS confused by 3' edge to read 668733 - best edge read 592713 len 4881 erate 0.0322 score 4723.83 - alt edge len 4500 erate 0.0103 score 4453.65 - absdiff 270.18 percdiff 5.8879 saved region 804:5895 - 4 best edges are potentially confused break tig 3695 into up to 3 pieces: 0 304 unique (length 304) 304 6395 repeat (length 6091) 6395 11396 unique (length 5001) Creating Unitig 113676 Creating Unitig 113677 Creating Unitig 113678 For tig 3695 unique region 0 304 - 0/ 1 reads repeat/unique - unitig 113676 created. For tig 3695 repeat region 304 6395 - 12/ 0 reads repeat/unique - unitig 113677 created. For tig 3695 unique region 6395 11396 - 0/ 8 reads repeat/unique - unitig 113678 created. Annotating repeats in reads for tig 3698/113047. Annotated with 1513 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7983:24094 - closest 5' read 336135 ( +0) 7983:12397 (-11697) saved region 7983:24094 - closest 3' read 408665 ( -8149) 16132:25081 ( +987) search for confused edges: tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 48215 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2960 erate 0.0606 score 2780.62 - absdiff 49.37 percdiff 1.7597 tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 176192 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2978 erate 0.0598 score 2799.92 - absdiff 30.07 percdiff 1.0684 tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 408664 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2953 erate 0.0624 score 2768.73 - absdiff 61.26 percdiff 2.1883 tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 451840 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2475 erate 0.0664 score 2310.66 - absdiff 519.33 percdiff 20.2048 tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 471952 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2978 erate 0.0528 score 2820.76 - absdiff 9.23 percdiff 0.3266 tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 496412 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2981 erate 0.0527 score 2823.90 - absdiff 6.09 percdiff 0.2154 tig 3698 read 123102 pos 3082-11202 IS confused by 5' edge to read 514738 - best edge read 597364 len 3043 erate 0.0700 score 2829.99 - alt edge len 2683 erate 0.0519 score 2543.75 - absdiff 286.24 percdiff 10.6532 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 104540 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 2691 erate 0.0409 score 2580.94 - absdiff 4787.61 percdiff 96.2384 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 120302 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 1435 erate 0.0578 score 1352.06 - absdiff 6016.49 percdiff 137.9834 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 123102 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 2973 erate 0.0624 score 2787.48 - absdiff 4581.07 percdiff 90.2137 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 123103 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 2898 erate 0.0687 score 2698.91 - absdiff 4669.64 percdiff 92.7671 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 146597 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 1455 erate 0.0611 score 1366.10 - absdiff 6002.45 percdiff 137.4400 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 352781 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 2041 erate 0.0593 score 1919.97 - absdiff 5448.58 percdiff 117.3186 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 352782 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 2038 erate 0.0608 score 1914.09 - absdiff 5454.46 percdiff 117.5196 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 521790 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 3004 erate 0.0718 score 2788.31 - absdiff 4580.24 percdiff 90.1900 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 576386 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 2911 erate 0.0481 score 2770.98 - absdiff 4597.57 percdiff 90.6860 tig 3698 read 408664 pos 16115-23738 NOT confused by 5' edge to read 627789 - best edge read 408665 len 7522 erate 0.0204 score 7368.55 - alt edge len 3527 erate 0.0298 score 3421.90 - absdiff 3946.66 percdiff 73.1509 saved region 7983:24094 - 7 best edges are potentially confused break tig 3698 into up to 3 pieces: 0 7483 unique (length 7483) 7483 24594 repeat (length 17111) 24594 29713 unique (length 5119) Creating Unitig 113679 Creating Unitig 113680 Creating Unitig 113681 For tig 3698 unique region 0 7483 - 0/ 7 reads repeat/unique - unitig 113679 created. For tig 3698 repeat region 7483 24594 - 61/ 0 reads repeat/unique - unitig 113680 created. For tig 3698 unique region 24594 29713 - 0/ 8 reads repeat/unique - unitig 113681 created. Annotating repeats in reads for tig 3700/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 476:2489 - contained in read 564811 0- 9747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3701/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3702/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3704/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3713/113047. Annotated with 522 overlaps. Scan reads to discard spanned repeats. discard region 11427:16163 - contained in read 410715 5894- 16163 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3718/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2121:5986 - closest read 431339 ( +1854) 267:6108 ( +122) (contained) saved region 2121:5986 - closest 5' read 431339 ( +1854) 267:6108 ( +122) saved region 2121:5986 - closest 3' read 431339 ( +1854) 267:6108 ( +122) search for confused edges: discard region 2121:5986 - no confusion in best edges Annotating repeats in reads for tig 3719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3724/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6214:2333 - contained in read 76758 0- 6466 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3729/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 0:2384 - contained in read 698707 0- 8373 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3731/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3733/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 13539:15691 - contained in read 112229 12988- 21527 discard region 15782:16929 - contained in read 112229 12988- 21527 discard region 17852:17293 - contained in read 112229 12988- 21527 discard region 18187:20273 - contained in read 112229 12988- 21527 discard region 21403:20684 - contained in read 112229 12988- 21527 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3737/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8007:9597 - closest read 398816 ( +0) 8007:14692 ( +5095) (contained) saved region 8007:9597 - closest 5' read 398816 ( +0) 8007:14692 ( +5095) saved region 8007:9597 - closest 3' read 398816 ( +0) 8007:14692 ( +5095) search for confused edges: discard region 8007:9597 - no confusion in best edges Annotating repeats in reads for tig 3740/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12402:17090 - contained in read 186743 11810- 18582 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3746/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3747/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 933:28 - contained in read 385946 0- 6094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3751/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3753/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 7449:9646 - contained in read 90641 0- 12532 discard region 10054:13453 - contained in read 184806 5045- 15701 discard region 21287:23005 - contained in read 382664 20453- 23760 thickest edges to the repeat regions: saved region 13727:19327 - closest read 392326 ( +0) 13727:20043 ( +716) (contained) saved region 13727:19327 - closest 5' read 392326 ( +0) 13727:20043 ( +716) saved region 13727:19327 - closest 3' read 392326 ( +0) 13727:20043 ( +716) search for confused edges: discard region 13727:19327 - no confusion in best edges Annotating repeats in reads for tig 3754/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12190:12739 - closest read 164359 ( +6329) 5861:12739 ( +0) (contained) saved region 12190:12739 - closest read 675248 ( +108) 12082:18775 ( +6036) (contained) saved region 12190:12739 - closest read 675249 ( +92) 12098:18587 ( +5848) (contained) saved region 12190:12739 - closest read 675251 ( +62) 12128:18773 ( +6034) (contained) saved region 12190:12739 - closest read 675250 ( +54) 12136:18761 ( +6022) (contained) saved region 12190:12739 - closest 5' read 675248 ( +108) 12082:18775 ( +6036) saved region 12190:12739 - closest 3' read 164359 ( +6329) 5861:12739 ( +0) search for confused edges: discard region 12190:12739 - no confusion in best edges Annotating repeats in reads for tig 3760/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10250:11709 - closest read 632546 ( +76) 10174:17268 ( +5559) (contained) saved region 10250:11709 - closest 5' read 632546 ( +76) 10174:17268 ( +5559) saved region 10250:11709 - closest 3' read 632546 ( +76) 10174:17268 ( +5559) search for confused edges: discard region 10250:11709 - no confusion in best edges Annotating repeats in reads for tig 3766/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3774/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 14503:11476 - contained in read 113589 9410- 16352 discard region 15992:17143 - contained in read 234420 11464- 21824 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3778/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 10152:11257 - contained in read 166147 6269- 13629 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3779/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 11795:12692 - contained in read 78890 7783- 14090 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3784/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 4547:5351 - contained in read 351286 0- 6790 discard region 12595:14097 - contained in read 321168 7245- 20885 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3786/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3788/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13722:17181 - contained in read 583595 12562- 18327 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3789/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 600:5297 - closest read 109013 ( +600) 0:5508 ( +211) (contained) saved region 600:5297 - closest read 109012 ( +0) 600:5484 ( +187) (contained) saved region 600:5297 - closest 5' read 109013 ( +600) 0:5508 ( +211) saved region 600:5297 - closest 3' read 109013 ( +600) 0:5508 ( +211) saved region 14676:16400 - closest 5' read 115506 ( +7382) 7294:15841 ( -559) saved region 14676:16400 - closest 3' read 118760 ( -58) 14734:22309 ( +5909) search for confused edges: tig 3789 read 115506 pos 7294-15841 IS confused by 3' edge to read 35906 - best edge read 118760 len 1116 erate 0.0447 score 1066.11 - alt edge len 923 erate 0.0412 score 884.97 - absdiff 181.14 percdiff 18.5684 tig 3789 read 115506 pos 7294-15841 IS confused by 3' edge to read 280881 - best edge read 118760 len 1116 erate 0.0447 score 1066.11 - alt edge len 921 erate 0.0734 score 853.40 - absdiff 212.72 percdiff 22.1636 tig 3789 read 115506 pos 7294-15841 IS confused by 3' edge to read 542060 - best edge read 118760 len 1116 erate 0.0447 score 1066.11 - alt edge len 919 erate 0.0561 score 867.44 - absdiff 198.67 percdiff 20.5497 tig 3789 read 115506 pos 7294-15841 IS confused by 3' edge to read 624409 - best edge read 118760 len 1116 erate 0.0447 score 1066.11 - alt edge len 749 erate 0.0629 score 701.89 - absdiff 364.23 percdiff 41.2021 tig 3789 read 115506 pos 7294-15841 IS confused by 3' edge to read 719591 - best edge read 118760 len 1116 erate 0.0447 score 1066.11 - alt edge len 816 erate 0.0515 score 773.98 - absdiff 292.14 percdiff 31.7527 discard region 600:5297 - no confusion in best edges saved region 14676:16400 - 5 best edges are potentially confused break tig 3789 into up to 3 pieces: 0 14176 unique (length 14176) 14176 16900 repeat (length 2724) 16900 40692 unique (length 23792) Creating Unitig 113682 Creating Unitig 113683 For tig 3789 unique region 0 14176 - 0/ 19 reads repeat/unique - unitig 113682 created. For tig 3789 repeat region 14176 16900 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3789 unique region 16900 40692 - 0/ 18 reads repeat/unique - unitig 113683 created. Annotating repeats in reads for tig 3790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3792/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3796/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 2002:2865 - contained in read 111007 0- 7268 discard region 11362:14284 - contained in read 250827 9682- 15774 thickest edges to the repeat regions: saved region 6566:7268 - closest read 111007 ( +6566) 0:7268 ( +0) (contained) saved region 6566:7268 - closest read 419497 ( +61) 6505:12786 ( +5518) (contained) saved region 6566:7268 - closest read 419496 ( +57) 6509:11052 ( +3784) (contained) saved region 6566:7268 - closest 5' read 419497 ( +61) 6505:12786 ( +5518) saved region 6566:7268 - closest 3' read 111007 ( +6566) 0:7268 ( +0) search for confused edges: discard region 6566:7268 - no confusion in best edges Annotating repeats in reads for tig 3797/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 10616:13082 - contained in read 173862 6841- 14251 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3799/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3802/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 27452:26555 - contained in read 12207 21186- 27835 thickest edges to the repeat regions: saved region 19768:26216 - closest 5' read 635124 ( +0) 19768:24963 ( -1253) saved region 19768:26216 - closest 3' read 635125 ( -528) 20296:26587 ( +371) search for confused edges: discard region 19768:26216 - no confusion in best edges Annotating repeats in reads for tig 3808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3809/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1925:3044 - contained in read 443588 0- 6738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3824/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5006:6801 - contained in read 121534 0- 8774 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3825/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 8082:9109 - contained in read 451232 3539- 11334 thickest edges to the repeat regions: saved region 17997:23491 - closest 5' read 459432 ( +9912) 8085:19662 ( -3829) saved region 17997:23491 - closest 3' read 591574 ( -59) 18056:25081 ( +1590) search for confused edges: tig 3825 read 459432 pos 8085-19662 IS confused by 3' edge to read 604905 - best edge read 591574 len 1560 erate 0.0660 score 1457.04 - alt edge len 1072 erate 0.0662 score 1001.03 - absdiff 456.01 percdiff 37.1027 tig 3825 read 459432 pos 8085-19662 IS confused by 3' edge to read 714620 - best edge read 591574 len 1560 erate 0.0660 score 1457.04 - alt edge len 941 erate 0.0588 score 885.67 - absdiff 571.37 percdiff 48.7786 tig 3825 read 459432 pos 8085-19662 IS confused by 3' edge to read 714621 - best edge read 591574 len 1560 erate 0.0660 score 1457.04 - alt edge len 940 erate 0.0691 score 875.05 - absdiff 581.99 percdiff 49.9119 saved region 17997:23491 - 3 best edges are potentially confused break tig 3825 into up to 3 pieces: 0 17497 unique (length 17497) 17497 23991 repeat (length 6494) 23991 29726 unique (length 5735) Creating Unitig 113684 Creating Unitig 113685 Creating Unitig 113686 For tig 3825 unique region 0 17497 - 0/ 20 reads repeat/unique - unitig 113684 created. For tig 3825 repeat region 17497 23991 - 25/ 0 reads repeat/unique - unitig 113686 created. For tig 3825 unique region 23991 29726 - 0/ 6 reads repeat/unique - unitig 113685 created. Annotating repeats in reads for tig 3829/113047. Annotated with 88 overlaps. Scan reads to discard spanned repeats. discard region 7645:15051 - contained in read 582986 2319- 15051 thickest edges to the repeat regions: saved region 342:6352 - closest read 23938 ( +276) 66:6375 ( +23) (contained) saved region 342:6352 - closest 5' read 23938 ( +276) 66:6375 ( +23) saved region 342:6352 - closest 3' read 23938 ( +276) 66:6375 ( +23) search for confused edges: tig 3829 read 582986 pos 2319-15051 IS confused by 3' edge to read 293916 - best edge read 23938 len 3977 erate 0.0468 score 3790.88 - alt edge len 3111 erate 0.0501 score 2955.14 - absdiff 835.74 percdiff 24.7772 tig 3829 read 582986 pos 2319-15051 NOT confused by 3' edge to read 353609 - best edge read 23938 len 3977 erate 0.0468 score 3790.88 - alt edge len 658 erate 0.0532 score 622.99 - absdiff 3167.88 percdiff 143.5421 tig 3829 read 582986 pos 2319-15051 IS confused by 3' edge to read 362425 - best edge read 23938 len 3977 erate 0.0468 score 3790.88 - alt edge len 2305 erate 0.0416 score 2209.11 - absdiff 1581.76 percdiff 52.7256 tig 3829 read 582986 pos 2319-15051 NOT confused by 3' edge to read 467205 - best edge read 23938 len 3977 erate 0.0468 score 3790.88 - alt edge len 1743 erate 0.0379 score 1676.94 - absdiff 2113.94 percdiff 77.3229 tig 3829 read 582986 pos 2319-15051 NOT confused by 3' edge to read 608967 - best edge read 23938 len 3977 erate 0.0468 score 3790.88 - alt edge len 673 erate 0.0342 score 649.98 - absdiff 3140.89 percdiff 141.4543 saved region 342:6352 - 2 best edges are potentially confused break tig 3829 into up to 2 pieces: 0 6852 repeat (length 6852) 6852 15051 unique (length 8199) Creating Unitig 113687 Creating Unitig 113688 For tig 3829 repeat region 0 6852 - 41/ 0 reads repeat/unique - unitig 113687 created. For tig 3829 unique region 6852 15051 - 0/ 10 reads repeat/unique - unitig 113688 created. Annotating repeats in reads for tig 3830/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3831/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3833/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3836/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3837/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 7149:11262 - contained in read 652104 6486- 16451 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3844/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 2067:8863 - contained in read 480256 253- 9584 thickest edges to the repeat regions: saved region 10647:12282 - closest read 57017 ( +0) 10647:14964 ( +2682) (contained) saved region 10647:12282 - closest 5' read 57017 ( +0) 10647:14964 ( +2682) saved region 10647:12282 - closest 3' read 57017 ( +0) 10647:14964 ( +2682) search for confused edges: discard region 10647:12282 - no confusion in best edges Annotating repeats in reads for tig 3845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3855/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11810:13992 - contained in read 670984 8692- 15944 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3859/113047. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 10948:11548 - contained in read 465030 4964- 14302 thickest edges to the repeat regions: saved region 3836:10733 - closest 5' read 340863 ( +1260) 2576:8945 ( -1788) saved region 3836:10733 - closest 3' read 465030 ( -1128) 4964:14302 ( +3569) search for confused edges: tig 3859 read 340863 pos 2576-8945 IS confused by 3' edge to read 77090 - best edge read 465031 len 3921 erate 0.0245 score 3824.94 - alt edge len 1964 erate 0.0311 score 1902.92 - absdiff 1922.02 percdiff 67.1112 tig 3859 read 340863 pos 2576-8945 IS confused by 3' edge to read 77091 - best edge read 465031 len 3921 erate 0.0245 score 3824.94 - alt edge len 1963 erate 0.0301 score 1903.91 - absdiff 1921.02 percdiff 67.0648 tig 3859 read 340863 pos 2576-8945 IS confused by 3' edge to read 524843 - best edge read 465031 len 3921 erate 0.0245 score 3824.94 - alt edge len 2682 erate 0.0306 score 2599.93 - absdiff 1225.00 percdiff 38.1332 tig 3859 read 340863 pos 2576-8945 NOT confused by 3' edge to read 719253 - best edge read 465031 len 3921 erate 0.0245 score 3824.94 - alt edge len 1385 erate 0.0390 score 1330.98 - absdiff 2493.95 percdiff 96.7412 tig 3859 read 465031 pos 4974-14321 IS confused by 5' edge to read 524845 - best edge read 340863 len 3922 erate 0.0245 score 3825.91 - alt edge len 2203 erate 0.0077 score 2186.04 - absdiff 1639.87 percdiff 54.5538 tig 3859 read 465031 pos 4974-14321 IS confused by 5' edge to read 536232 - best edge read 340863 len 3922 erate 0.0245 score 3825.91 - alt edge len 1890 erate 0.0138 score 1863.92 - absdiff 1961.99 percdiff 68.9649 tig 3859 read 465031 pos 4974-14321 IS confused by 5' edge to read 536233 - best edge read 340863 len 3922 erate 0.0245 score 3825.91 - alt edge len 1929 erate 0.0088 score 1912.02 - absdiff 1913.89 percdiff 66.7099 tig 3859 read 465031 pos 4974-14321 NOT confused by 5' edge to read 665050 - best edge read 340863 len 3922 erate 0.0245 score 3825.91 - alt edge len 564 erate 0.0125 score 556.95 - absdiff 3268.96 percdiff 149.1702 saved region 3836:10733 - 6 best edges are potentially confused break tig 3859 into up to 3 pieces: 0 3336 unique (length 3336) 3336 11233 repeat (length 7897) 11233 15181 unique (length 3948) Creating Unitig 113689 Creating Unitig 113690 Creating Unitig 113691 For tig 3859 unique region 0 3336 - 0/ 6 reads repeat/unique - unitig 113689 created. For tig 3859 repeat region 3336 11233 - 21/ 0 reads repeat/unique - unitig 113690 created. For tig 3859 unique region 11233 15181 - 0/ 10 reads repeat/unique - unitig 113691 created. Annotating repeats in reads for tig 3860/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 12536:13139 - contained in read 713364 7014- 19569 discard region 15555:16156 - contained in read 713364 7014- 19569 discard region 16944:17868 - contained in read 713364 7014- 19569 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3862/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3865/113047. Annotated with 144 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:12475 - closest read 468389 ( +0) 0:12808 ( +333) (contained) saved region 0:12475 - closest 5' read 468389 ( +0) 0:12808 ( +333) saved region 0:12475 - closest 3' read 468389 ( +0) 0:12808 ( +333) saved region 16517:20507 - closest 5' read 135124 ( +0) 16517:20505 ( -2) saved region 16517:20507 - closest 3' read 2565 ( -581) 17098:20507 ( +0) search for confused edges: tig 3865 read 71427 pos 17529-24520 IS confused by 3' edge to read 222682 - best edge read 559678 len 2901 erate 0.0576 score 2733.90 - alt edge len 2717 erate 0.0745 score 2514.58 - absdiff 219.32 percdiff 8.3574 tig 3865 read 71427 pos 17529-24520 IS confused by 3' edge to read 222684 - best edge read 559678 len 2901 erate 0.0576 score 2733.90 - alt edge len 2761 erate 0.0746 score 2555.03 - absdiff 178.87 percdiff 6.7641 tig 3865 read 71427 pos 17529-24520 IS confused by 3' edge to read 463964 - best edge read 559678 len 2901 erate 0.0576 score 2733.90 - alt edge len 2895 erate 0.0494 score 2751.99 - absdiff 18.08 percdiff 0.6593 tig 3865 read 71427 pos 17529-24520 IS confused by 3' edge to read 478774 - best edge read 559678 len 2901 erate 0.0576 score 2733.90 - alt edge len 1739 erate 0.0673 score 1621.97 - absdiff 1111.94 percdiff 51.0547 tig 3865 read 71427 pos 17529-24520 IS confused by 3' edge to read 506221 - best edge read 559678 len 2901 erate 0.0576 score 2733.90 - alt edge len 1864 erate 0.0682 score 1736.88 - absdiff 997.03 percdiff 44.6020 discard region 0:12475 - no confusion in best edges saved region 16517:20507 - 5 best edges are potentially confused break tig 3865 into up to 3 pieces: 0 16017 unique (length 16017) 16017 21007 repeat (length 4990) 21007 25838 unique (length 4831) Creating Unitig 113692 Creating Unitig 113693 Creating Unitig 113694 For tig 3865 unique region 0 16017 - 0/ 54 reads repeat/unique - unitig 113692 created. For tig 3865 repeat region 16017 21007 - 19/ 0 reads repeat/unique - unitig 113693 created. For tig 3865 unique region 21007 25838 - 0/ 8 reads repeat/unique - unitig 113694 created. Annotating repeats in reads for tig 3866/113047. Annotated with 229 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3627:11652 - closest 5' read 85962 ( +742) 2885:9511 ( -2141) saved region 3627:11652 - closest 3' read 47237 ( -3697) 7324:16189 ( +4537) search for confused edges: tig 3866 read 85962 pos 2885-9511 NOT confused by 5' edge to read 118358 - best edge read 327517 len 4987 erate 0.0342 score 4816.44 - alt edge len 891 erate 0.0523 score 844.40 - absdiff 3972.04 percdiff 140.3339 tig 3866 read 85962 pos 2885-9511 NOT confused by 5' edge to read 388130 - best edge read 327517 len 4987 erate 0.0342 score 4816.44 - alt edge len 2627 erate 0.0550 score 2482.51 - absdiff 2333.93 percdiff 63.9524 tig 3866 read 85962 pos 2885-9511 NOT confused by 5' edge to read 635630 - best edge read 327517 len 4987 erate 0.0342 score 4816.44 - alt edge len 2586 erate 0.0551 score 2443.51 - absdiff 2372.93 percdiff 65.3705 tig 3866 read 85962 pos 2885-9511 NOT confused by 5' edge to read 708594 - best edge read 327517 len 4987 erate 0.0342 score 4816.44 - alt edge len 1289 erate 0.0391 score 1238.60 - absdiff 3577.84 percdiff 118.1773 tig 3866 read 85962 pos 2885-9511 NOT confused by 5' edge to read 708595 - best edge read 327517 len 4987 erate 0.0342 score 4816.44 - alt edge len 1297 erate 0.0435 score 1240.58 - absdiff 3575.86 percdiff 118.0733 tig 3866 read 327517 pos 4207-10878 IS confused by 5' edge to read 708594 - best edge read 47237 len 4219 erate 0.0441 score 4032.94 - alt edge len 2926 erate 0.0458 score 2791.99 - absdiff 1240.95 percdiff 36.3653 tig 3866 read 327517 pos 4207-10878 IS confused by 5' edge to read 708595 - best edge read 47237 len 4219 erate 0.0441 score 4032.94 - alt edge len 2934 erate 0.0593 score 2760.01 - absdiff 1272.93 percdiff 37.4779 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 35293 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2438 erate 0.0308 score 2362.91 - absdiff 1681.50 percdiff 52.4869 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 60138 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 946 erate 0.0441 score 904.28 - absdiff 3140.13 percdiff 126.9075 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 96073 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 1915 erate 0.0556 score 1808.53 - absdiff 2235.89 percdiff 76.4022 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 155990 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 3173 erate 0.0548 score 2999.12 - absdiff 1045.29 percdiff 29.6809 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 208062 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2915 erate 0.0435 score 2788.20 - absdiff 1256.22 percdiff 36.7712 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 247468 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 665 erate 0.0286 score 645.98 - absdiff 3398.43 percdiff 144.9103 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 284754 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2082 erate 0.0312 score 2017.04 - absdiff 2027.37 percdiff 66.8939 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 284755 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2081 erate 0.0341 score 2010.04 - absdiff 2034.37 percdiff 67.2026 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 284756 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2065 erate 0.0271 score 2009.04 - absdiff 2035.37 percdiff 67.2467 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 365247 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 693 erate 0.0277 score 673.80 - absdiff 3370.61 percdiff 142.8764 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 365248 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 687 erate 0.0281 score 667.70 - absdiff 3376.72 percdiff 143.3209 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 415445 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 3016 erate 0.0491 score 2867.91 - absdiff 1176.50 percdiff 34.0406 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 491945 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 702 erate 0.0399 score 673.99 - absdiff 3370.42 percdiff 142.8629 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 495595 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2791 erate 0.0409 score 2676.85 - absdiff 1367.56 percdiff 40.6937 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 495596 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2775 erate 0.0260 score 2702.85 - absdiff 1341.56 percdiff 39.7661 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 495597 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 581 erate 0.0534 score 549.97 - absdiff 3494.44 percdiff 152.1177 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 504522 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2301 erate 0.0372 score 2215.40 - absdiff 1829.01 percdiff 58.4365 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 504523 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2305 erate 0.0376 score 2218.33 - absdiff 1826.08 percdiff 58.3157 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 582819 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 692 erate 0.0391 score 664.94 - absdiff 3379.47 percdiff 143.5215 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 582986 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 686 erate 0.0475 score 653.41 - absdiff 3391.00 percdiff 144.3645 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 586259 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 1871 erate 0.0251 score 1824.04 - absdiff 2220.38 percdiff 75.6716 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 588403 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2153 erate 0.0316 score 2084.97 - absdiff 1959.45 percdiff 63.9363 tig 3866 read 47237 pos 7324-16189 IS confused by 3' edge to read 588404 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 2157 erate 0.0307 score 2090.78 - absdiff 1953.63 percdiff 63.6861 tig 3866 read 47237 pos 7324-16189 NOT confused by 3' edge to read 706707 - best edge read 327517 len 4231 erate 0.0441 score 4044.41 - alt edge len 746 erate 0.0416 score 714.97 - absdiff 3329.45 percdiff 139.9110 saved region 3627:11652 - 15 best edges are potentially confused break tig 3866 into up to 3 pieces: 0 3127 unique (length 3127) 3127 12152 repeat (length 9025) 12152 16189 unique (length 4037) Creating Unitig 113695 Creating Unitig 113696 Creating Unitig 113697 For tig 3866 unique region 0 3127 - 0/ 9 reads repeat/unique - unitig 113695 created. For tig 3866 repeat region 3127 12152 - 24/ 0 reads repeat/unique - unitig 113696 created. For tig 3866 unique region 12152 16189 - 0/ 3 reads repeat/unique - unitig 113697 created. Annotating repeats in reads for tig 3871/113047. Annotated with 162 overlaps. Scan reads to discard spanned repeats. discard region 0:819 - contained in read 652602 0- 7109 thickest edges to the repeat regions: saved region 4720:7460 - closest 5' read 652603 ( +4718) 2:7116 ( -344) saved region 4720:7460 - closest 3' read 423703 ( -919) 5639:12778 ( +5318) search for confused edges: tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 245018 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 521 erate 0.0580 score 490.78 - absdiff 398.84 percdiff 57.7863 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 287948 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 849 erate 0.0379 score 816.82 - absdiff 72.80 percdiff 8.5326 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 350507 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 557 erate 0.0633 score 521.74 - absdiff 367.88 percdiff 52.1315 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 350508 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 573 erate 0.0594 score 538.96 - absdiff 350.66 percdiff 49.0920 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 350509 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 580 erate 0.0402 score 556.68 - absdiff 332.94 percdiff 46.0401 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 461692 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 568 erate 0.0542 score 537.21 - absdiff 352.41 percdiff 49.3974 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 545822 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 709 erate 0.0607 score 665.96 - absdiff 223.66 percdiff 28.7559 tig 3871 read 82739 pos 6155-12854 IS confused by 5' edge to read 545826 - best edge read 652603 len 953 erate 0.0665 score 889.63 - alt edge len 699 erate 0.0463 score 666.64 - absdiff 222.99 percdiff 28.6570 saved region 4720:7460 - 8 best edges are potentially confused break tig 3871 into up to 3 pieces: 0 4220 unique (length 4220) 4220 7960 repeat (length 3740) 7960 16519 unique (length 8559) Creating Unitig 113698 Creating Unitig 113699 For tig 3871 unique region 0 4220 - 0/ 8 reads repeat/unique - unitig 113698 created. For tig 3871 repeat region 4220 7960 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3871 unique region 7960 16519 - 0/ 12 reads repeat/unique - unitig 113699 created. Annotating repeats in reads for tig 3872/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6240:9430 - closest read 187457 ( +4176) 2064:9437 ( +7) (contained) saved region 6240:9430 - closest read 206776 ( +3030) 3210:9436 ( +6) (contained) saved region 6240:9430 - closest read 523341 ( +495) 5745:11167 ( +1737) (contained) saved region 6240:9430 - closest read 523340 ( +492) 5748:11204 ( +1774) (contained) saved region 6240:9430 - closest read 523342 ( +475) 5765:11152 ( +1722) (contained) saved region 6240:9430 - closest 5' read 523340 ( +492) 5748:11204 ( +1774) saved region 6240:9430 - closest 3' read 187457 ( +4176) 2064:9437 ( +7) search for confused edges: discard region 6240:9430 - no confusion in best edges Annotating repeats in reads for tig 3876/113047. Annotated with 99 overlaps. Scan reads to discard spanned repeats. discard region 4216:12418 - contained in read 639374 3122- 18362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3881/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5908:6485 - closest read 185008 ( +5908) 0:6485 ( +0) (contained) saved region 5908:6485 - closest read 411720 ( +61) 5847:12789 ( +6304) (contained) saved region 5908:6485 - closest read 37541 ( +9) 5899:12234 ( +5749) (contained) saved region 5908:6485 - closest read 37540 ( +3) 5905:11323 ( +4838) (contained) saved region 5908:6485 - closest 5' read 411720 ( +61) 5847:12789 ( +6304) saved region 5908:6485 - closest 3' read 185008 ( +5908) 0:6485 ( +0) search for confused edges: discard region 5908:6485 - no confusion in best edges Annotating repeats in reads for tig 3884/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3887/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3296:7769 - closest 5' read 560554 ( +1137) 2159:7755 ( -14) saved region 3296:7769 - closest 3' read 18397 ( -2173) 5469:7769 ( +0) search for confused edges: discard region 3296:7769 - no confusion in best edges Annotating repeats in reads for tig 3888/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11225:16429 - closest read 250793 ( +618) 10607:16429 ( +0) (contained) saved region 11225:16429 - closest 5' read 250793 ( +618) 10607:16429 ( +0) saved region 11225:16429 - closest 3' read 250793 ( +618) 10607:16429 ( +0) search for confused edges: discard region 11225:16429 - no confusion in best edges Annotating repeats in reads for tig 3889/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 9191:12221 - contained in read 293067 3544- 12792 thickest edges to the repeat regions: saved region 3358:6107 - closest read 429380 ( +31) 3327:6107 ( +0) (contained) saved region 3358:6107 - closest read 405193 ( +27) 3331:6549 ( +442) (contained) saved region 3358:6107 - closest read 405194 ( +24) 3334:7339 ( +1232) (contained) saved region 3358:6107 - closest read 641089 ( +17) 3341:8957 ( +2850) (contained) saved region 3358:6107 - closest read 126309 ( +6) 3352:6123 ( +16) (contained) saved region 3358:6107 - closest 5' read 641089 ( +17) 3341:8957 ( +2850) saved region 3358:6107 - closest 3' read 429380 ( +31) 3327:6107 ( +0) search for confused edges: discard region 3358:6107 - no confusion in best edges Annotating repeats in reads for tig 3893/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2013:3325 - contained in read 425642 0- 9200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3894/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3895/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3897/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3224:5003 - contained in read 169779 0- 5766 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3899/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3902/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4370:5905 - closest read 172946 ( +4370) 0:6120 ( +215) (contained) saved region 4370:5905 - closest read 172949 ( +4352) 18:5905 ( +0) (contained) saved region 4370:5905 - closest read 172948 ( +4292) 78:6078 ( +173) (contained) saved region 4370:5905 - closest read 172947 ( +3565) 805:6101 ( +196) (contained) saved region 4370:5905 - closest read 337813 ( +339) 4031:10235 ( +4330) (contained) saved region 4370:5905 - closest 5' read 337813 ( +339) 4031:10235 ( +4330) saved region 4370:5905 - closest 3' read 172946 ( +4370) 0:6120 ( +215) search for confused edges: discard region 4370:5905 - no confusion in best edges Annotating repeats in reads for tig 3904/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3911/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3916/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3326:6717 - closest read 705444 ( +0) 3326:6717 ( +0) (contained) saved region 3326:6717 - closest 5' read 705444 ( +0) 3326:6717 ( +0) saved region 3326:6717 - closest 3' read 705444 ( +0) 3326:6717 ( +0) search for confused edges: tig 3916 read 178602 pos 0-4657 IS confused by 3' edge to read 156397 - best edge read 629253 len 1171 erate 0.0521 score 1109.99 - alt edge len 1307 erate 0.0521 score 1238.91 - absdiff 128.91 percdiff 10.9766 saved region 3326:6717 - 1 best edges are potentially confused break tig 3916 into up to 3 pieces: 0 2826 unique (length 2826) 2826 7217 repeat (length 4391) 7217 12415 unique (length 5198) Creating Unitig 113700 Creating Unitig 113701 Creating Unitig 113702 For tig 3916 unique region 0 2826 - 0/ 2 reads repeat/unique - unitig 113700 created. For tig 3916 repeat region 2826 7217 - 5/ 0 reads repeat/unique - unitig 113701 created. For tig 3916 unique region 7217 12415 - 0/ 11 reads repeat/unique - unitig 113702 created. Annotating repeats in reads for tig 3917/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3921/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3923/113047. Annotated with 79 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1563:3076 - closest read 183287 ( +1562) 1:3076 ( +0) (contained) saved region 1563:3076 - closest read 629899 ( +357) 1206:5435 ( +2359) (contained) saved region 1563:3076 - closest read 146611 ( +95) 1468:7631 ( +4555) (contained) saved region 1563:3076 - closest 5' read 146611 ( +95) 1468:7631 ( +4555) saved region 1563:3076 - closest 3' read 183287 ( +1562) 1:3076 ( +0) saved region 3272:12565 - closest 5' read 501848 ( +828) 2444:12148 ( -417) saved region 3272:12565 - closest 3' read 400787 ( -2583) 5855:12565 ( +0) search for confused edges: tig 3923 read 501848 pos 2444-12148 NOT confused by 5' edge to read 370532 - best edge read 400787 len 6233 erate 0.0359 score 6009.24 - alt edge len 1700 erate 0.0409 score 1630.47 - absdiff 4378.77 percdiff 114.6318 tig 3923 read 400787 pos 5855-12565 NOT confused by 3' edge to read 144706 - best edge read 501848 len 6187 erate 0.0359 score 5964.89 - alt edge len 1445 erate 0.0545 score 1366.25 - absdiff 4598.64 percdiff 125.4551 discard region 1563:3076 - no confusion in best edges discard region 3272:12565 - no confusion in best edges Annotating repeats in reads for tig 3924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3927/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 6909:9190 - contained in read 229151 3353- 10805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3931/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3935/113047. Annotated with 178 overlaps. Scan reads to discard spanned repeats. discard region 0:2544 - contained in read 191691 0- 3875 thickest edges to the repeat regions: saved region 2941:10663 - closest 5' read 58603 ( +1785) 1156:8958 ( -1705) saved region 2941:10663 - closest 3' read 663918 ( -1742) 4683:16654 ( +5991) saved region 14383:18054 - closest 5' read 421032 ( +1365) 13018:17784 ( -270) saved region 14383:18054 - closest 3' read 190486 ( -47) 14430:20086 ( +2032) search for confused edges: tig 3935 read 156918 pos 11040-17354 IS confused by 5' edge to read 9614 - best edge read 190486 len 2858 erate 0.0449 score 2729.68 - alt edge len 2653 erate 0.0555 score 2505.76 - absdiff 223.92 percdiff 8.5539 tig 3935 read 156918 pos 11040-17354 IS confused by 5' edge to read 70875 - best edge read 190486 len 2858 erate 0.0449 score 2729.68 - alt edge len 2840 erate 0.0588 score 2673.01 - absdiff 56.67 percdiff 2.0978 tig 3935 read 156918 pos 11040-17354 IS confused by 5' edge to read 595375 - best edge read 190486 len 2858 erate 0.0449 score 2729.68 - alt edge len 1498 erate 0.0519 score 1420.25 - absdiff 1309.42 percdiff 63.1057 tig 3935 read 156918 pos 11040-17354 IS confused by 5' edge to read 623624 - best edge read 190486 len 2858 erate 0.0449 score 2729.68 - alt edge len 2271 erate 0.0592 score 2136.56 - absdiff 593.12 percdiff 24.3769 discard region 2941:10663 - no confusion in best edges saved region 14383:18054 - 4 best edges are potentially confused break tig 3935 into up to 3 pieces: 0 13883 unique (length 13883) 13883 18554 repeat (length 4671) 18554 20086 unique (length 1532) Creating Unitig 113703 Creating Unitig 113704 Creating Unitig 113705 For tig 3935 unique region 0 13883 - 0/ 29 reads repeat/unique - unitig 113703 created. For tig 3935 repeat region 13883 18554 - 31/ 0 reads repeat/unique - unitig 113705 created. For tig 3935 unique region 18554 20086 - 0/ 2 reads repeat/unique - unitig 113704 created. Annotating repeats in reads for tig 3936/113047. Annotated with 428 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2414:13134 - closest 5' read 426363 ( +2414) 0:6755 ( -6379) saved region 2414:13134 - closest 3' read 404044 ( -1424) 3838:13134 ( +0) search for confused edges: tig 3936 read 426363 pos 0-6755 IS confused by 3' edge to read 496587 - best edge read 404044 len 1981 erate 0.0449 score 1892.05 - alt edge len 861 erate 0.0520 score 816.23 - absdiff 1075.83 percdiff 79.4471 tig 3936 read 426363 pos 0-6755 IS confused by 3' edge to read 622845 - best edge read 404044 len 1981 erate 0.0449 score 1892.05 - alt edge len 1259 erate 0.0520 score 1193.53 - absdiff 698.52 percdiff 45.2764 saved region 2414:13134 - 2 best edges are potentially confused break tig 3936 into up to 2 pieces: 0 1914 unique (length 1914) 1914 13134 repeat (length 11220) Creating Unitig 113706 Creating Unitig 113707 For tig 3936 unique region 0 1914 - 0/ 4 reads repeat/unique - unitig 113706 created. For tig 3936 repeat region 1914 13134 - 58/ 0 reads repeat/unique - unitig 113707 created. Annotating repeats in reads for tig 3938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3939/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:1825 - contained in read 338720 0- 6335 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3943/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 13271:14656 - contained in read 337828 10150- 15187 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3947/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 10046:12804 - contained in read 198846 6569- 13888 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3949/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3549:4861 - contained in read 237756 0- 8186 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3950/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 0:4741 - contained in read 49993 0- 6600 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3959/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5625:6386 - closest read 69802 ( +5625) 0:6386 ( +0) (contained) saved region 5625:6386 - closest 5' read 69802 ( +5625) 0:6386 ( +0) saved region 5625:6386 - closest 3' read 69802 ( +5625) 0:6386 ( +0) search for confused edges: discard region 5625:6386 - no confusion in best edges Annotating repeats in reads for tig 3964/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3967/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5116:0 - contained in read 217657 0- 7248 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3971/113047. Annotated with 1867 overlaps. Scan reads to discard spanned repeats. discard region 14477:27155 - contained in read 550786 7205- 27155 thickest edges to the repeat regions: saved region 888:13843 - closest read 514250 ( +0) 888:21480 ( +7637) (contained) saved region 888:13843 - closest 5' read 514250 ( +0) 888:21480 ( +7637) saved region 888:13843 - closest 3' read 514250 ( +0) 888:21480 ( +7637) search for confused edges: tig 3971 read 15842 pos 3607-12862 IS confused by 3' edge to read 49220 - best edge read 453274 len 3887 erate 0.0396 score 3733.07 - alt edge len 3732 erate 0.0544 score 3528.98 - absdiff 204.10 percdiff 5.6209 tig 3971 read 15842 pos 3607-12862 NOT confused by 3' edge to read 284336 - best edge read 453274 len 3887 erate 0.0396 score 3733.07 - alt edge len 1466 erate 0.0494 score 1393.58 - absdiff 2339.50 percdiff 91.2679 tig 3971 read 15842 pos 3607-12862 IS confused by 3' edge to read 365342 - best edge read 453274 len 3887 erate 0.0396 score 3733.07 - alt edge len 2591 erate 0.0516 score 2457.30 - absdiff 1275.77 percdiff 41.2178 tig 3971 read 15842 pos 3607-12862 IS confused by 3' edge to read 376338 - best edge read 453274 len 3887 erate 0.0396 score 3733.07 - alt edge len 2357 erate 0.0657 score 2202.15 - absdiff 1530.93 percdiff 51.5880 saved region 888:13843 - 3 best edges are potentially confused break tig 3971 into up to 3 pieces: 0 388 unique (length 388) 388 14343 repeat (length 13955) 14343 27155 unique (length 12812) Creating Unitig 113708 Creating Unitig 113709 Creating Unitig 113710 For tig 3971 unique region 0 388 - 0/ 4 reads repeat/unique - unitig 113708 created. For tig 3971 repeat region 388 14343 - 11/ 0 reads repeat/unique - unitig 113710 created. For tig 3971 unique region 14343 27155 - 0/ 884 reads repeat/unique - unitig 113709 created. Annotating repeats in reads for tig 3973/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12186:12726 - contained in read 150789 8311- 15913 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3984/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 0:768 - contained in read 487041 0- 7543 discard region 2755:1549 - contained in read 487041 0- 7543 thickest edges to the repeat regions: saved region 2908:7904 - closest 5' read 487041 ( +2908) 0:7543 ( -361) saved region 2908:7904 - closest 3' read 53287 ( -2092) 5000:9096 ( +1192) search for confused edges: discard region 2908:7904 - no confusion in best edges Annotating repeats in reads for tig 3985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3988/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5977 - closest read 198632 ( +0) 0:6058 ( +81) (contained) saved region 0:5977 - closest 5' read 198632 ( +0) 0:6058 ( +81) saved region 0:5977 - closest 3' read 198632 ( +0) 0:6058 ( +81) search for confused edges: tig 3988 read 288102 pos 24-6409 IS confused by 3' edge to read 151999 - best edge read 198632 len 5908 erate 0.0684 score 5503.89 - alt edge len 5584 erate 0.0138 score 5506.94 - absdiff 3.05 percdiff 0.0554 tig 3988 read 288102 pos 24-6409 IS confused by 3' edge to read 152000 - best edge read 198632 len 5908 erate 0.0684 score 5503.89 - alt edge len 5876 erate 0.0138 score 5794.91 - absdiff 291.02 percdiff 5.1513 tig 3988 read 288102 pos 24-6409 IS confused by 3' edge to read 253033 - best edge read 198632 len 5908 erate 0.0684 score 5503.89 - alt edge len 5579 erate 0.0072 score 5538.83 - absdiff 34.94 percdiff 0.6328 tig 3988 read 288102 pos 24-6409 IS confused by 3' edge to read 426166 - best edge read 198632 len 5908 erate 0.0684 score 5503.89 - alt edge len 5271 erate 0.0139 score 5197.73 - absdiff 306.16 percdiff 5.7217 tig 3988 read 288102 pos 24-6409 NOT confused by 3' edge to read 531495 - best edge read 198632 len 5908 erate 0.0684 score 5503.89 - alt edge len 1752 erate 0.0291 score 1701.02 - absdiff 3802.88 percdiff 105.5635 saved region 0:5977 - 4 best edges are potentially confused break tig 3988 into up to 2 pieces: 0 6477 repeat (length 6477) 6477 6897 unique (length 420) Creating Unitig 113711 Creating Unitig 113712 For tig 3988 repeat region 0 6477 - 25/ 0 reads repeat/unique - unitig 113711 created. For tig 3988 unique region 6477 6897 - 0/ 2 reads repeat/unique - unitig 113712 created. Annotating repeats in reads for tig 3994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3996/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 0:2036 - contained in read 619027 0- 6095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3997/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3365:4425 - contained in read 236066 9- 5114 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4002/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4007/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4010/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4020/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4028/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4029/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4031/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 19532:18799 - contained in read 687813 9168- 19535 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4038/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7998:11881 - closest 5' read 82371 ( +3565) 4433:11517 ( -364) saved region 7998:11881 - closest 3' read 233613 ( -33) 8031:11881 ( +0) saved region 16921:17561 - closest read 539131 ( +17) 16904:23525 ( +5964) (contained) saved region 16921:17561 - closest read 539132 ( +0) 16921:24705 ( +7144) (contained) saved region 16921:17561 - closest 5' read 539132 ( +0) 16921:24705 ( +7144) saved region 16921:17561 - closest 3' read 539131 ( +17) 16904:23525 ( +5964) search for confused edges: tig 4038 read 82371 pos 4433-11517 IS confused by 3' edge to read 265127 - best edge read 233613 len 3423 erate 0.0488 score 3255.96 - alt edge len 1322 erate 0.0542 score 1250.35 - absdiff 2005.61 percdiff 89.0135 tig 4038 read 663588 pos 10502-15752 IS confused by 5' edge to read 94929 - best edge read 233613 len 1368 erate 0.0492 score 1300.69 - alt edge len 808 erate 0.0387 score 776.73 - absdiff 523.96 percdiff 50.4436 tig 4038 read 663588 pos 10502-15752 IS confused by 5' edge to read 94930 - best edge read 233613 len 1368 erate 0.0492 score 1300.69 - alt edge len 805 erate 0.0426 score 770.71 - absdiff 529.99 percdiff 51.1719 tig 4038 read 663588 pos 10502-15752 IS confused by 5' edge to read 526877 - best edge read 233613 len 1368 erate 0.0492 score 1300.69 - alt edge len 1046 erate 0.0395 score 1004.68 - absdiff 296.01 percdiff 25.6801 tig 4038 read 663588 pos 10502-15752 IS confused by 5' edge to read 652521 - best edge read 233613 len 1368 erate 0.0492 score 1300.69 - alt edge len 1022 erate 0.0338 score 987.46 - absdiff 313.24 percdiff 27.3791 saved region 7998:11881 - 5 best edges are potentially confused discard region 16921:17561 - no confusion in best edges break tig 4038 into up to 3 pieces: 0 7498 unique (length 7498) 7498 12381 repeat (length 4883) 12381 24705 unique (length 12324) Creating Unitig 113713 Creating Unitig 113714 Creating Unitig 113715 For tig 4038 unique region 0 7498 - 0/ 11 reads repeat/unique - unitig 113713 created. For tig 4038 repeat region 7498 12381 - 23/ 0 reads repeat/unique - unitig 113714 created. For tig 4038 unique region 12381 24705 - 0/ 11 reads repeat/unique - unitig 113715 created. Annotating repeats in reads for tig 4039/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 0:6055 - contained in read 298023 0- 6844 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4041/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 18832:18230 - contained in read 82250 4188- 18832 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4052/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 13401:15727 - contained in read 314619 11175- 18920 discard region 16778:18195 - contained in read 314619 11175- 18920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4054/113047. Annotated with 394 overlaps. Scan reads to discard spanned repeats. discard region 0:1664 - contained in read 57852 0- 7321 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4057/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14728:15273 - closest read 664706 ( +5519) 9209:15278 ( +5) (contained) saved region 14728:15273 - closest read 664702 ( +5262) 9466:15274 ( +1) (contained) saved region 14728:15273 - closest read 261968 ( +0) 14728:18985 ( +3712) (contained) saved region 14728:15273 - closest 5' read 261968 ( +0) 14728:18985 ( +3712) saved region 14728:15273 - closest 3' read 664706 ( +5519) 9209:15278 ( +5) search for confused edges: discard region 14728:15273 - no confusion in best edges Annotating repeats in reads for tig 4060/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 12026:13451 - contained in read 176265 8265- 15072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4062/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8186:7340 - contained in read 262083 0- 8061 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4067/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 1690:3067 - contained in read 649481 0- 3884 thickest edges to the repeat regions: saved region 3073:7074 - closest read 162361 ( +1328) 1745:7074 ( +0) (contained) saved region 3073:7074 - closest 5' read 162361 ( +1328) 1745:7074 ( +0) saved region 3073:7074 - closest 3' read 162361 ( +1328) 1745:7074 ( +0) search for confused edges: tig 4067 read 111063 pos 3107-9425 IS confused by 5' edge to read 149153 - best edge read 162361 len 3905 erate 0.0670 score 3643.37 - alt edge len 2528 erate 0.0174 score 2484.01 - absdiff 1159.35 percdiff 37.8417 saved region 3073:7074 - 1 best edges are potentially confused break tig 4067 into up to 3 pieces: 0 2573 unique (length 2573) 2573 7574 repeat (length 5001) 7574 10371 unique (length 2797) Creating Unitig 113716 Creating Unitig 113717 Creating Unitig 113718 For tig 4067 unique region 0 2573 - 0/ 14 reads repeat/unique - unitig 113716 created. For tig 4067 repeat region 2573 7574 - 6/ 0 reads repeat/unique - unitig 113717 created. For tig 4067 unique region 7574 10371 - 0/ 9 reads repeat/unique - unitig 113718 created. Annotating repeats in reads for tig 4068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4074/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 7496:8048 - contained in read 586990 1916- 9141 discard region 13206:14338 - contained in read 585757 8170- 15715 thickest edges to the repeat regions: saved region 8170:13160 - closest read 168629 ( +172) 7998:14731 ( +1571) (contained) saved region 8170:13160 - closest read 707549 ( +42) 8128:14068 ( +908) (contained) saved region 8170:13160 - closest read 707548 ( +36) 8134:14164 ( +1004) (contained) saved region 8170:13160 - closest read 246802 ( +30) 8140:14155 ( +995) (contained) saved region 8170:13160 - closest read 585757 ( +0) 8170:15715 ( +2555) (contained) saved region 8170:13160 - closest 5' read 585757 ( +0) 8170:15715 ( +2555) saved region 8170:13160 - closest 3' read 168629 ( +172) 7998:14731 ( +1571) search for confused edges: discard region 8170:13160 - no confusion in best edges Annotating repeats in reads for tig 4086/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4088/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7311:5985 - contained in read 686133 0- 9268 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4091/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 5617:6782 - contained in read 275180 0- 7695 discard region 16312:16883 - contained in read 673376 9909- 18206 discard region 17026:18330 - contained in read 104488 14150- 21569 thickest edges to the repeat regions: saved region 9909:16186 - closest read 673376 ( +0) 9909:18206 ( +2020) (contained) saved region 9909:16186 - closest 5' read 673376 ( +0) 9909:18206 ( +2020) saved region 9909:16186 - closest 3' read 673376 ( +0) 9909:18206 ( +2020) search for confused edges: discard region 9909:16186 - no confusion in best edges Annotating repeats in reads for tig 4098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4099/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 9398:11374 - contained in read 621576 8000- 14681 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4100/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13085:17751 - closest 5' read 714794 ( +5496) 7589:17748 ( -3) saved region 13085:17751 - closest 3' read 312650 ( -194) 13279:20902 ( +3151) search for confused edges: tig 4100 read 714794 pos 7589-17748 IS confused by 5' edge to read 30994 - best edge read 312650 len 4334 erate 0.0414 score 4154.57 - alt edge len 3925 erate 0.0219 score 3839.04 - absdiff 315.53 percdiff 7.8945 tig 4100 read 714794 pos 7589-17748 IS confused by 5' edge to read 30995 - best edge read 312650 len 4334 erate 0.0414 score 4154.57 - alt edge len 3923 erate 0.0245 score 3826.89 - absdiff 327.69 percdiff 8.2112 tig 4100 read 312650 pos 13279-20902 NOT confused by 5' edge to read 53558 - best edge read 714794 len 4363 erate 0.0414 score 4182.37 - alt edge len 1853 erate 0.0350 score 1788.14 - absdiff 2394.23 percdiff 80.2017 tig 4100 read 312650 pos 13279-20902 NOT confused by 5' edge to read 53559 - best edge read 714794 len 4363 erate 0.0414 score 4182.37 - alt edge len 1861 erate 0.0386 score 1789.17 - absdiff 2393.21 percdiff 80.1538 tig 4100 read 312650 pos 13279-20902 IS confused by 5' edge to read 254924 - best edge read 714794 len 4363 erate 0.0414 score 4182.37 - alt edge len 4207 erate 0.0368 score 4052.18 - absdiff 130.19 percdiff 3.1620 saved region 13085:17751 - 3 best edges are potentially confused break tig 4100 into up to 3 pieces: 0 12585 unique (length 12585) 12585 18251 repeat (length 5666) 18251 20902 unique (length 2651) Creating Unitig 113719 Creating Unitig 113720 Creating Unitig 113721 For tig 4100 unique region 0 12585 - 0/ 13 reads repeat/unique - unitig 113719 created. For tig 4100 repeat region 12585 18251 - 7/ 0 reads repeat/unique - unitig 113720 created. For tig 4100 unique region 18251 20902 - 0/ 2 reads repeat/unique - unitig 113721 created. Annotating repeats in reads for tig 4102/113047. Annotated with 535 overlaps. Scan reads to discard spanned repeats. discard region 0:5042 - contained in read 450467 0- 6429 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4105/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 8343:9544 - contained in read 283813 0- 14717 thickest edges to the repeat regions: saved region 16482:20941 - closest 5' read 190899 ( +9334) 7148:20285 ( -656) saved region 16482:20941 - closest 3' read 98760 ( -2466) 18948:26273 ( +5332) search for confused edges: tig 4105 read 190899 pos 7148-20285 NOT confused by 5' edge to read 349062 - best edge read 98761 len 1321 erate 0.0282 score 1283.75 - alt edge len 3615 erate 0.0498 score 3434.97 - absdiff 2151.23 percdiff 91.1783 discard region 16482:20941 - no confusion in best edges Annotating repeats in reads for tig 4109/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4434:3460 - contained in read 351908 0- 6915 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4110/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:3831 - contained in read 272919 0- 7341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4113/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4127/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10281:9661 - contained in read 470472 4607- 11715 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4129/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1756:7259 - closest 5' read 552618 ( +0) 1756:7250 ( -9) saved region 1756:7259 - closest 3' read 507239 ( -831) 2587:8806 ( +1547) search for confused edges: tig 4129 read 9896 pos 0-5557 IS confused by 3' edge to read 165943 - best edge read 507239 len 2933 erate 0.0609 score 2754.38 - alt edge len 2503 erate 0.0291 score 2430.16 - absdiff 324.22 percdiff 12.5071 tig 4129 read 9896 pos 0-5557 IS confused by 3' edge to read 190522 - best edge read 507239 len 2933 erate 0.0609 score 2754.38 - alt edge len 2138 erate 0.0677 score 1993.26 - absdiff 761.12 percdiff 32.0632 tig 4129 read 9896 pos 0-5557 IS confused by 3' edge to read 190523 - best edge read 507239 len 2933 erate 0.0609 score 2754.38 - alt edge len 2250 erate 0.0710 score 2090.25 - absdiff 664.13 percdiff 27.4172 saved region 1756:7259 - 3 best edges are potentially confused break tig 4129 into up to 3 pieces: 0 1256 unique (length 1256) 1256 7759 repeat (length 6503) 7759 17466 unique (length 9707) Creating Unitig 113722 Creating Unitig 113723 Creating Unitig 113724 For tig 4129 unique region 0 1256 - 0/ 1 reads repeat/unique - unitig 113722 created. For tig 4129 repeat region 1256 7759 - 5/ 0 reads repeat/unique - unitig 113723 created. For tig 4129 unique region 7759 17466 - 0/ 15 reads repeat/unique - unitig 113724 created. Annotating repeats in reads for tig 4135/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4143/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2785:5109 - contained in read 304052 0- 6734 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4145/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4147/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6469:9879 - closest read 427922 ( +617) 5852:9879 ( +0) (contained) saved region 6469:9879 - closest read 427923 ( +149) 6320:10498 ( +619) (contained) saved region 6469:9879 - closest 5' read 427923 ( +149) 6320:10498 ( +619) saved region 6469:9879 - closest 3' read 427922 ( +617) 5852:9879 ( +0) search for confused edges: discard region 6469:9879 - no confusion in best edges Annotating repeats in reads for tig 4148/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1409:0 - contained in read 307308 0- 6041 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4160/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 22656:21523 - contained in read 599719 10276- 22656 thickest edges to the repeat regions: saved region 10760:15108 - closest read 599719 ( +484) 10276:22656 ( +7548) (contained) saved region 10760:15108 - closest read 63736 ( +324) 10436:17318 ( +2210) (contained) saved region 10760:15108 - closest read 63738 ( +324) 10436:17307 ( +2199) (contained) saved region 10760:15108 - closest read 63740 ( +320) 10440:17317 ( +2209) (contained) saved region 10760:15108 - closest read 63739 ( +310) 10450:17305 ( +2197) (contained) saved region 10760:15108 - closest read 63737 ( +251) 10509:17295 ( +2187) (contained) saved region 10760:15108 - closest read 364528 ( +0) 10760:15108 ( +0) (contained) saved region 10760:15108 - closest 5' read 599719 ( +484) 10276:22656 ( +7548) saved region 10760:15108 - closest 3' read 599719 ( +484) 10276:22656 ( +7548) search for confused edges: discard region 10760:15108 - no confusion in best edges Annotating repeats in reads for tig 4163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4164/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3696:7027 - closest read 678707 ( +3696) 0:7027 ( +0) (contained) saved region 3696:7027 - closest 5' read 678707 ( +3696) 0:7027 ( +0) saved region 3696:7027 - closest 3' read 678707 ( +3696) 0:7027 ( +0) search for confused edges: discard region 3696:7027 - no confusion in best edges Annotating repeats in reads for tig 4168/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5137:8298 - closest 5' read 474077 ( +5137) 0:8046 ( -252) saved region 5137:8298 - closest 3' read 206182 ( -1182) 6319:8298 ( +0) saved region 14105:15121 - closest read 574677 ( +0) 14105:23104 ( +7983) (contained) saved region 14105:15121 - closest 5' read 574677 ( +0) 14105:23104 ( +7983) saved region 14105:15121 - closest 3' read 574677 ( +0) 14105:23104 ( +7983) search for confused edges: tig 4168 read 574679 pos 14109-23104 IS confused by 3' edge to read 621655 - best edge read 45208 len 1001 erate 0.0375 score 963.46 - alt edge len 929 erate 0.0560 score 876.98 - absdiff 86.49 percdiff 9.3985 tig 4168 read 574679 pos 14109-23104 IS confused by 3' edge to read 621656 - best edge read 45208 len 1001 erate 0.0375 score 963.46 - alt edge len 933 erate 0.0490 score 887.28 - absdiff 76.18 percdiff 8.2323 discard region 5137:8298 - no confusion in best edges saved region 14105:15121 - 2 best edges are potentially confused break tig 4168 into up to 3 pieces: 0 13605 unique (length 13605) 13605 15621 repeat (length 2016) 15621 27128 unique (length 11507) Creating Unitig 113725 Creating Unitig 113726 For tig 4168 unique region 0 13605 - 0/ 12 reads repeat/unique - unitig 113725 created. For tig 4168 repeat region 13605 15621 - 0/ 0 repeat/unique reads - no new unitig created. For tig 4168 unique region 15621 27128 - 0/ 11 reads repeat/unique - unitig 113726 created. Annotating repeats in reads for tig 4171/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11834:12387 - contained in read 698154 3833- 13019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4179/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4191/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 0:3942 - contained in read 275158 0- 5751 discard region 4288:5662 - contained in read 572655 3231- 7913 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4194/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4209/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 3221:5512 - contained in read 343547 0- 7613 discard region 6259:7742 - contained in read 170687 4139- 7969 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4213/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8724:8161 - contained in read 180585 5657- 8724 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4215/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4222/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 8906:11574 - contained in read 285096 7730- 14148 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4241/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16387:17694 - closest read 363066 ( +1) 16386:21667 ( +3973) (contained) saved region 16387:17694 - closest read 363065 ( +0) 16387:21672 ( +3978) (contained) saved region 16387:17694 - closest 5' read 363065 ( +0) 16387:21672 ( +3978) saved region 16387:17694 - closest 3' read 363066 ( +1) 16386:21667 ( +3973) search for confused edges: discard region 16387:17694 - no confusion in best edges Annotating repeats in reads for tig 4244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4248/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6396:7531 - contained in read 50595 461- 8305 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4251/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 266:7221 - closest read 260070 ( +0) 266:7221 ( +0) (contained) saved region 266:7221 - closest 5' read 260070 ( +0) 266:7221 ( +0) saved region 266:7221 - closest 3' read 260070 ( +0) 266:7221 ( +0) search for confused edges: discard region 266:7221 - no confusion in best edges Annotating repeats in reads for tig 4252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4256/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4259/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4266/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 896:7542 - closest 5' read 590543 ( +896) 0:6069 ( -1473) saved region 896:7542 - closest 3' read 439781 ( -180) 1076:12026 ( +4484) search for confused edges: discard region 896:7542 - no confusion in best edges Annotating repeats in reads for tig 4270/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6029:5331 - contained in read 377898 0- 6247 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4272/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1718:2778 - contained in read 619873 0- 6515 discard region 2841:4986 - contained in read 619873 0- 6515 discard region 5634:6515 - contained in read 566312 1531- 10378 thickest edges to the repeat regions: saved region 9578:10408 - closest read 566313 ( +8008) 1570:10430 ( +22) (contained) saved region 9578:10408 - closest read 23697 ( +0) 9578:18043 ( +7635) (contained) saved region 9578:10408 - closest 5' read 23697 ( +0) 9578:18043 ( +7635) saved region 9578:10408 - closest 3' read 566313 ( +8008) 1570:10430 ( +22) search for confused edges: discard region 9578:10408 - no confusion in best edges Annotating repeats in reads for tig 4278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4279/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 436:1983 - contained in read 382825 0- 6079 discard region 6179:5314 - contained in read 382825 0- 6079 thickest edges to the repeat regions: saved region 7845:8768 - closest read 718521 ( +2520) 5325:8768 ( +0) (contained) saved region 7845:8768 - closest read 490161 ( +87) 7758:14326 ( +5558) (contained) saved region 7845:8768 - closest read 490159 ( +76) 7769:14329 ( +5561) (contained) saved region 7845:8768 - closest read 490158 ( +65) 7780:14315 ( +5547) (contained) saved region 7845:8768 - closest read 490160 ( +55) 7790:14339 ( +5571) (contained) saved region 7845:8768 - closest 5' read 490160 ( +55) 7790:14339 ( +5571) saved region 7845:8768 - closest 3' read 718521 ( +2520) 5325:8768 ( +0) saved region 9436:15645 - closest read 577384 ( +0) 9436:19136 ( +3491) (contained) saved region 9436:15645 - closest 5' read 577384 ( +0) 9436:19136 ( +3491) saved region 9436:15645 - closest 3' read 577384 ( +0) 9436:19136 ( +3491) search for confused edges: tig 4279 read 490159 pos 7769-14329 NOT confused by 3' edge to read 292009 - best edge read 577384 len 4812 erate 0.0532 score 4556.00 - alt edge len 528 erate 0.0284 score 513.00 - absdiff 4043.00 percdiff 159.5183 discard region 7845:8768 - no confusion in best edges discard region 9436:15645 - no confusion in best edges Annotating repeats in reads for tig 4280/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 13827:15860 - contained in read 272070 8363- 16475 thickest edges to the repeat regions: saved region 8314:12190 - closest 5' read 57124 ( +0) 8314:12147 ( -43) saved region 8314:12190 - closest 3' read 528595 ( -19) 8333:12190 ( +0) search for confused edges: tig 4280 read 218373 pos 3024-10824 IS confused by 5' edge to read 720705 - best edge read 272070 len 2438 erate 0.0547 score 2304.64 - alt edge len 1061 erate 0.0618 score 995.43 - absdiff 1309.21 percdiff 79.3444 saved region 8314:12190 - 1 best edges are potentially confused break tig 4280 into up to 3 pieces: 0 7814 unique (length 7814) 7814 12690 repeat (length 4876) 12690 26645 unique (length 13955) Creating Unitig 113727 Creating Unitig 113728 Creating Unitig 113729 For tig 4280 unique region 0 7814 - 0/ 8 reads repeat/unique - unitig 113727 created. For tig 4280 repeat region 7814 12690 - 32/ 0 reads repeat/unique - unitig 113728 created. For tig 4280 unique region 12690 26645 - 0/ 17 reads repeat/unique - unitig 113729 created. Annotating repeats in reads for tig 4287/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 739:3348 - contained in read 389568 0- 5935 discard region 6140:8112 - contained in read 541592 3957- 8120 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4297/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19552:22941 - closest read 252752 ( +5164) 14388:23019 ( +78) (contained) saved region 19552:22941 - closest read 123261 ( +44) 19508:24417 ( +1476) (contained) saved region 19552:22941 - closest 5' read 123261 ( +44) 19508:24417 ( +1476) saved region 19552:22941 - closest 3' read 252752 ( +5164) 14388:23019 ( +78) search for confused edges: discard region 19552:22941 - no confusion in best edges Annotating repeats in reads for tig 4299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4303/113047. Annotated with 521 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8025:16610 - closest 5' read 50232 ( +2746) 5279:12642 ( -3968) saved region 8025:16610 - closest 3' read 439337 ( -1664) 9689:16610 ( +0) search for confused edges: tig 4303 read 50232 pos 5279-12642 IS confused by 5' edge to read 289658 - best edge read 439337 len 2904 erate 0.0516 score 2754.15 - alt edge len 2492 erate 0.0610 score 2339.99 - absdiff 414.17 percdiff 16.2605 saved region 8025:16610 - 1 best edges are potentially confused break tig 4303 into up to 2 pieces: 0 7525 unique (length 7525) 7525 16610 repeat (length 9085) Creating Unitig 113730 Creating Unitig 113731 For tig 4303 unique region 0 7525 - 0/ 9 reads repeat/unique - unitig 113730 created. For tig 4303 repeat region 7525 16610 - 28/ 0 reads repeat/unique - unitig 113731 created. Annotating repeats in reads for tig 4304/113047. Annotated with 214 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6925:14428 - closest 5' read 103463 ( +3911) 3014:9540 ( -4888) saved region 6925:14428 - closest 3' read 56919 ( -3038) 9963:16925 ( +2497) search for confused edges: tig 4304 read 65132 pos 7112-13597 IS confused by 5' edge to read 33275 - best edge read 56919 len 3554 erate 0.0549 score 3358.89 - alt edge len 2962 erate 0.0347 score 2859.22 - absdiff 499.67 percdiff 16.0714 tig 4304 read 65132 pos 7112-13597 IS confused by 5' edge to read 367299 - best edge read 56919 len 3554 erate 0.0549 score 3358.89 - alt edge len 2246 erate 0.0717 score 2084.96 - absdiff 1273.92 percdiff 46.8023 saved region 6925:14428 - 2 best edges are potentially confused break tig 4304 into up to 3 pieces: 0 6425 unique (length 6425) 6425 14928 repeat (length 8503) 14928 16925 unique (length 1997) Creating Unitig 113732 Creating Unitig 113733 Creating Unitig 113734 For tig 4304 unique region 0 6425 - 0/ 12 reads repeat/unique - unitig 113732 created. For tig 4304 repeat region 6425 14928 - 29/ 0 reads repeat/unique - unitig 113733 created. For tig 4304 unique region 14928 16925 - 0/ 2 reads repeat/unique - unitig 113734 created. Annotating repeats in reads for tig 4305/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4306/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4308/113047. Annotated with 678 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:17965 - closest 5' read 692160 ( +0) 0:15857 ( -2108) saved region 0:17965 - closest 3' read 400615 ( -9798) 9798:19227 ( +1262) search for confused edges: tig 4308 read 400613 pos 9803-19285 IS confused by 5' edge to read 608890 - best edge read 692160 len 5689 erate 0.0509 score 5399.43 - alt edge len 4173 erate 0.0252 score 4067.84 - absdiff 1331.59 percdiff 28.1304 tig 4308 read 400613 pos 9803-19285 IS confused by 5' edge to read 608891 - best edge read 692160 len 5689 erate 0.0509 score 5399.43 - alt edge len 4265 erate 0.0197 score 4180.98 - absdiff 1218.45 percdiff 25.4363 tig 4308 read 400613 pos 9803-19285 IS confused by 5' edge to read 608892 - best edge read 692160 len 5689 erate 0.0509 score 5399.43 - alt edge len 4211 erate 0.0259 score 4101.94 - absdiff 1297.49 percdiff 27.3118 tig 4308 read 400613 pos 9803-19285 IS confused by 5' edge to read 655055 - best edge read 692160 len 5689 erate 0.0509 score 5399.43 - alt edge len 4548 erate 0.0251 score 4433.85 - absdiff 965.58 percdiff 19.6391 tig 4308 read 400613 pos 9803-19285 IS confused by 5' edge to read 662055 - best edge read 692160 len 5689 erate 0.0509 score 5399.43 - alt edge len 4159 erate 0.0202 score 4074.99 - absdiff 1324.44 percdiff 27.9583 tig 4308 read 400613 pos 9803-19285 IS confused by 5' edge to read 694003 - best edge read 692160 len 5689 erate 0.0509 score 5399.43 - alt edge len 3663 erate 0.0188 score 3594.14 - absdiff 1805.29 percdiff 40.1464 saved region 0:17965 - 6 best edges are potentially confused break tig 4308 into up to 2 pieces: 0 18465 repeat (length 18465) 18465 19285 unique (length 820) Creating Unitig 113735 Creating Unitig 113736 For tig 4308 repeat region 0 18465 - 828/ 0 reads repeat/unique - unitig 113735 created. For tig 4308 unique region 18465 19285 - 0/ 2 reads repeat/unique - unitig 113736 created. Annotating repeats in reads for tig 4314/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 7008:8352 - contained in read 353928 4149- 10175 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4321/113047. Annotated with 379 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:18300 - closest 5' read 125835 ( +0) 0:13218 ( -5082) saved region 0:18300 - closest 3' read 242222 ( -7970) 7970:18300 ( +0) search for confused edges: tig 4321 read 602326 pos 279-10744 NOT confused by 3' edge to read 406245 - best edge read 522767 len 8848 erate 0.0227 score 8647.15 - alt edge len 1869 erate 0.0268 score 1818.91 - absdiff 6828.24 percdiff 130.4835 tig 4321 read 602326 pos 279-10744 NOT confused by 3' edge to read 407792 - best edge read 522767 len 8848 erate 0.0227 score 8647.15 - alt edge len 1167 erate 0.0548 score 1103.05 - absdiff 7544.10 percdiff 154.7477 tig 4321 read 522767 pos 2267-15450 NOT confused by 5' edge to read 281219 - best edge read 602326 len 8869 erate 0.0227 score 8667.67 - alt edge len 3655 erate 0.0342 score 3530.00 - absdiff 5137.67 percdiff 84.2402 tig 4321 read 522767 pos 2267-15450 NOT confused by 5' edge to read 529561 - best edge read 602326 len 8869 erate 0.0227 score 8667.67 - alt edge len 2710 erate 0.0499 score 2574.77 - absdiff 6092.90 percdiff 108.3911 tig 4321 read 522767 pos 2267-15450 NOT confused by 5' edge to read 561350 - best edge read 602326 len 8869 erate 0.0227 score 8667.67 - alt edge len 3660 erate 0.0285 score 3555.69 - absdiff 5111.98 percdiff 83.6428 tig 4321 read 618714 pos 3909-16918 NOT confused by 3' edge to read 281219 - best edge read 522767 len 11171 erate 0.0177 score 10973.27 - alt edge len 3241 erate 0.0391 score 3114.28 - absdiff 7859.00 percdiff 111.5736 tig 4321 read 618714 pos 3909-16918 NOT confused by 3' edge to read 529561 - best edge read 522767 len 11171 erate 0.0177 score 10973.27 - alt edge len 2677 erate 0.0551 score 2529.50 - absdiff 8443.78 percdiff 125.0673 tig 4321 read 618714 pos 3909-16918 NOT confused by 3' edge to read 561350 - best edge read 522767 len 11171 erate 0.0177 score 10973.27 - alt edge len 5527 erate 0.0317 score 5351.79 - absdiff 5621.48 percdiff 68.8693 tig 4321 read 125834 pos 4189-17555 NOT confused by 5' edge to read 281219 - best edge read 618714 len 11484 erate 0.0199 score 11255.47 - alt edge len 3502 erate 0.0370 score 3372.43 - absdiff 7883.04 percdiff 107.7810 tig 4321 read 125834 pos 4189-17555 NOT confused by 5' edge to read 529561 - best edge read 618714 len 11484 erate 0.0199 score 11255.47 - alt edge len 2560 erate 0.0543 score 2420.99 - absdiff 8834.48 percdiff 129.1924 tig 4321 read 125834 pos 4189-17555 NOT confused by 5' edge to read 561350 - best edge read 618714 len 11484 erate 0.0199 score 11255.47 - alt edge len 5026 erate 0.0323 score 4863.66 - absdiff 6391.81 percdiff 79.3071 tig 4321 read 406245 pos 11141-18369 IS confused by 5' edge to read 281219 - best edge read 125834 len 3255 erate 0.0346 score 3142.38 - alt edge len 2941 erate 0.0387 score 2827.18 - absdiff 315.19 percdiff 10.5600 tig 4321 read 406245 pos 11141-18369 IS confused by 5' edge to read 529561 - best edge read 125834 len 3255 erate 0.0346 score 3142.38 - alt edge len 2759 erate 0.0550 score 2607.25 - absdiff 535.12 percdiff 18.6141 tig 4321 read 406245 pos 11141-18369 IS confused by 5' edge to read 561350 - best edge read 125834 len 3255 erate 0.0346 score 3142.38 - alt edge len 1610 erate 0.0318 score 1558.80 - absdiff 1583.58 percdiff 67.3693 tig 4321 read 406245 pos 11141-18369 IS confused by 5' edge to read 602326 - best edge read 125834 len 3255 erate 0.0346 score 3142.38 - alt edge len 1870 erate 0.0268 score 1819.88 - absdiff 1322.49 percdiff 53.3020 saved region 0:18300 - 4 best edges are potentially confused Annotating repeats in reads for tig 4322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4325/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2375:6215 - contained in read 408511 455- 6215 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4326/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 15033:16353 - contained in read 258414 11060- 19540 discard region 16653:17231 - contained in read 258414 11060- 19540 thickest edges to the repeat regions: saved region 9708:14511 - closest 5' read 133940 ( +983) 8725:14497 ( -14) saved region 9708:14511 - closest 3' read 258414 ( -1352) 11060:19540 ( +5029) search for confused edges: tig 4326 read 133941 pos 5918-14490 IS confused by 5' edge to read 344199 - best edge read 258414 len 3420 erate 0.0223 score 3343.73 - alt edge len 4797 erate 0.0723 score 4450.18 - absdiff 1106.44 percdiff 28.3925 saved region 9708:14511 - 1 best edges are potentially confused break tig 4326 into up to 3 pieces: 0 9208 unique (length 9208) 9208 15011 repeat (length 5803) 15011 23047 unique (length 8036) Creating Unitig 113737 Creating Unitig 113738 Creating Unitig 113739 For tig 4326 unique region 0 9208 - 0/ 19 reads repeat/unique - unitig 113737 created. For tig 4326 repeat region 9208 15011 - 1/ 0 reads repeat/unique - unitig 113738 created. For tig 4326 unique region 15011 23047 - 0/ 35 reads repeat/unique - unitig 113739 created. Annotating repeats in reads for tig 4329/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 9808:11231 - contained in read 68352 0- 12448 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4332/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4343/113047. Annotated with 73 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8134:11100 - closest read 551830 ( +3689) 4445:11100 ( +0) (contained) saved region 8134:11100 - closest read 503675 ( +0) 8134:14314 ( +3214) (contained) saved region 8134:11100 - closest 5' read 503675 ( +0) 8134:14314 ( +3214) saved region 8134:11100 - closest 3' read 551830 ( +3689) 4445:11100 ( +0) search for confused edges: discard region 8134:11100 - no confusion in best edges Annotating repeats in reads for tig 4344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4347/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 12028:11269 - contained in read 582171 9- 12837 discard region 17532:18145 - contained in read 526290 12005- 18794 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4352/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4078:4684 - contained in read 28032 31- 5745 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4364/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5314:4721 - contained in read 628518 0- 11877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4365/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4367/113047. Annotated with 61 overlaps. Scan reads to discard spanned repeats. discard region 0:831 - contained in read 429648 0- 6659 thickest edges to the repeat regions: saved region 5349:12270 - closest 5' read 277456 ( +0) 5349:12249 ( -21) saved region 5349:12270 - closest 3' read 711566 ( -98) 5447:20013 ( +7743) search for confused edges: discard region 5349:12270 - no confusion in best edges Annotating repeats in reads for tig 4369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4375/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8547:10133 - closest read 670742 ( +0) 8547:18415 ( +8282) (contained) saved region 8547:10133 - closest 5' read 670742 ( +0) 8547:18415 ( +8282) saved region 8547:10133 - closest 3' read 670742 ( +0) 8547:18415 ( +8282) search for confused edges: discard region 8547:10133 - no confusion in best edges Annotating repeats in reads for tig 4377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4380/113047. Annotated with 58 overlaps. Scan reads to discard spanned repeats. discard region 9943:12041 - contained in read 665237 8100- 15134 thickest edges to the repeat regions: saved region 13348:17075 - closest read 442602 ( +0) 13348:18062 ( +987) (contained) saved region 13348:17075 - closest 5' read 442602 ( +0) 13348:18062 ( +987) saved region 13348:17075 - closest 3' read 442602 ( +0) 13348:18062 ( +987) search for confused edges: tig 4380 read 104081 pos 9672-16755 IS confused by 3' edge to read 698112 - best edge read 442602 len 3356 erate 0.0499 score 3188.54 - alt edge len 3332 erate 0.0560 score 3145.41 - absdiff 43.13 percdiff 1.3618 saved region 13348:17075 - 1 best edges are potentially confused break tig 4380 into up to 3 pieces: 0 12848 unique (length 12848) 12848 17575 repeat (length 4727) 17575 18062 unique (length 487) Creating Unitig 113740 Creating Unitig 113741 Creating Unitig 113742 For tig 4380 unique region 0 12848 - 0/ 15 reads repeat/unique - unitig 113740 created. For tig 4380 repeat region 12848 17575 - 13/ 0 reads repeat/unique - unitig 113742 created. For tig 4380 unique region 17575 18062 - 0/ 1 reads repeat/unique - unitig 113741 created. Annotating repeats in reads for tig 4381/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 15049:15863 - contained in read 156055 12848- 18693 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4386/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4391/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5839:6822 - closest read 441076 ( +5839) 0:6822 ( +0) (contained) saved region 5839:6822 - closest read 441074 ( +5838) 1:6825 ( +3) (contained) saved region 5839:6822 - closest read 441075 ( +5826) 13:6822 ( +0) (contained) saved region 5839:6822 - closest read 506177 ( +64) 5775:13024 ( +6202) (contained) saved region 5839:6822 - closest read 506180 ( +63) 5776:13017 ( +6195) (contained) saved region 5839:6822 - closest read 506179 ( +56) 5783:13027 ( +6205) (contained) saved region 5839:6822 - closest 5' read 506179 ( +56) 5783:13027 ( +6205) saved region 5839:6822 - closest 3' read 441076 ( +5839) 0:6822 ( +0) saved region 10702:13233 - closest 5' read 506179 ( +4919) 5783:13027 ( -206) saved region 10702:13233 - closest 3' read 603409 ( -7) 10709:17139 ( +3906) search for confused edges: discard region 5839:6822 - no confusion in best edges discard region 10702:13233 - no confusion in best edges Annotating repeats in reads for tig 4392/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4402/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 919:1481 - contained in read 587495 0- 5451 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4435/113047. Annotated with 125 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5919:11638 - closest 5' read 27552 ( +3767) 2152:11214 ( -424) saved region 5919:11638 - closest 3' read 259535 ( -1900) 7819:11638 ( +0) search for confused edges: discard region 5919:11638 - no confusion in best edges Annotating repeats in reads for tig 4438/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 15275:10655 - contained in read 415172 0- 11272 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4439/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4441/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 13285:11603 - contained in read 263174 4845- 12944 discard region 13455:11756 - contained in read 263174 4845- 12944 thickest edges to the repeat regions: saved region 5106:10298 - closest read 263174 ( +261) 4845:12944 ( +2646) (contained) saved region 5106:10298 - closest read 489148 ( +0) 5106:14234 ( +3936) (contained) saved region 5106:10298 - closest 5' read 489148 ( +0) 5106:14234 ( +3936) saved region 5106:10298 - closest 3' read 263174 ( +261) 4845:12944 ( +2646) search for confused edges: discard region 5106:10298 - no confusion in best edges Annotating repeats in reads for tig 4442/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 9326:22572 - contained in read 541686 7329- 23718 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4452/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13131:14098 - contained in read 478089 393- 14112 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4453/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2229:6707 - closest read 471430 ( +2229) 0:6707 ( +0) (contained) saved region 2229:6707 - closest 5' read 471430 ( +2229) 0:6707 ( +0) saved region 2229:6707 - closest 3' read 471430 ( +2229) 0:6707 ( +0) search for confused edges: tig 4453 read 160664 pos 2297-8968 NOT confused by 5' edge to read 537015 - best edge read 471430 len 4378 erate 0.0653 score 4092.12 - alt edge len 865 erate 0.0571 score 815.61 - absdiff 3276.51 percdiff 133.5245 discard region 2229:6707 - no confusion in best edges Annotating repeats in reads for tig 4456/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4464/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 8934:10790 - contained in read 222615 3394- 11918 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4466/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4471/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 2389:3531 - contained in read 477313 0- 6322 discard region 5171:9607 - contained in read 700189 688- 10323 discard region 10043:13786 - contained in read 503196 4703- 14433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4478/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2686:3945 - contained in read 125128 0- 5648 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4487/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9134:10565 - closest read 226855 ( +0) 9134:19678 ( +9113) (contained) saved region 9134:10565 - closest 5' read 226855 ( +0) 9134:19678 ( +9113) saved region 9134:10565 - closest 3' read 226855 ( +0) 9134:19678 ( +9113) search for confused edges: discard region 9134:10565 - no confusion in best edges Annotating repeats in reads for tig 4490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4492/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 2292:8896 - contained in read 196424 966- 8896 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4494/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4495/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4499/113047. Annotated with 1473 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:18616 - closest 5' read 92247 ( +0) 0:11955 ( -6661) saved region 0:18616 - closest 3' read 267349 ( -7741) 7741:18616 ( +0) search for confused edges: tig 4499 read 487585 pos 1412-17529 NOT confused by 3' edge to read 93171 - best edge read 550898 len 13724 erate 0.0650 score 12831.94 - alt edge len 1549 erate 0.0742 score 1434.06 - absdiff 11397.88 percdiff 159.7907 tig 4499 read 487585 pos 1412-17529 IS confused by 3' edge to read 161947 - best edge read 550898 len 13724 erate 0.0650 score 12831.94 - alt edge len 12251 erate 0.0502 score 11636.00 - absdiff 1195.94 percdiff 9.7756 tig 4499 read 487585 pos 1412-17529 NOT confused by 3' edge to read 196384 - best edge read 550898 len 13724 erate 0.0650 score 12831.94 - alt edge len 3524 erate 0.0579 score 3319.96 - absdiff 9511.98 percdiff 117.7816 tig 4499 read 487585 pos 1412-17529 NOT confused by 3' edge to read 196386 - best edge read 550898 len 13724 erate 0.0650 score 12831.94 - alt edge len 3524 erate 0.0551 score 3329.83 - absdiff 9502.11 percdiff 117.5875 tig 4499 read 487585 pos 1412-17529 NOT confused by 3' edge to read 703036 - best edge read 550898 len 13724 erate 0.0650 score 12831.94 - alt edge len 5714 erate 0.0599 score 5371.73 - absdiff 7460.21 percdiff 81.9638 saved region 0:18616 - 1 best edges are potentially confused Annotating repeats in reads for tig 4501/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6076:9162 - contained in read 487993 0- 12895 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4505/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4296:9283 - closest read 92068 ( +56) 4240:10906 ( +1623) (contained) saved region 4296:9283 - closest 5' read 92068 ( +56) 4240:10906 ( +1623) saved region 4296:9283 - closest 3' read 92068 ( +56) 4240:10906 ( +1623) search for confused edges: discard region 4296:9283 - no confusion in best edges Annotating repeats in reads for tig 4512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4515/113047. Annotated with 685 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4075:7829 - closest 5' read 519176 ( +3126) 949:7524 ( -305) saved region 4075:7829 - closest 3' read 207195 ( -254) 4329:13824 ( +5995) search for confused edges: tig 4515 read 519180 pos 933-7521 IS confused by 3' edge to read 207193 - best edge read 207195 len 3128 erate 0.0496 score 2972.85 - alt edge len 3118 erate 0.0468 score 2972.08 - absdiff 0.77 percdiff 0.0260 tig 4515 read 519180 pos 933-7521 IS confused by 3' edge to read 207194 - best edge read 207195 len 3128 erate 0.0496 score 2972.85 - alt edge len 3111 erate 0.0463 score 2966.96 - absdiff 5.89 percdiff 0.1983 tig 4515 read 519180 pos 933-7521 IS confused by 3' edge to read 280493 - best edge read 207195 len 3128 erate 0.0496 score 2972.85 - alt edge len 1726 erate 0.0151 score 1699.94 - absdiff 1272.91 percdiff 54.4820 tig 4515 read 519180 pos 933-7521 IS confused by 3' edge to read 475899 - best edge read 207195 len 3128 erate 0.0496 score 2972.85 - alt edge len 1082 erate 0.0336 score 1045.64 - absdiff 1927.21 percdiff 95.9168 tig 4515 read 519180 pos 933-7521 IS confused by 3' edge to read 581053 - best edge read 207195 len 3128 erate 0.0496 score 2972.85 - alt edge len 3019 erate 0.0109 score 2986.09 - absdiff 13.24 percdiff 0.4444 tig 4515 read 207195 pos 4329-13824 IS confused by 5' edge to read 31648 - best edge read 519180 len 3167 erate 0.0496 score 3009.92 - alt edge len 3161 erate 0.0612 score 2967.55 - absdiff 42.37 percdiff 1.4177 tig 4515 read 207195 pos 4329-13824 IS confused by 5' edge to read 87418 - best edge read 519180 len 3167 erate 0.0496 score 3009.92 - alt edge len 2721 erate 0.0573 score 2565.09 - absdiff 444.83 percdiff 15.9580 tig 4515 read 207195 pos 4329-13824 IS confused by 5' edge to read 168136 - best edge read 519180 len 3167 erate 0.0496 score 3009.92 - alt edge len 2599 erate 0.0746 score 2405.11 - absdiff 604.80 percdiff 22.3379 saved region 4075:7829 - 8 best edges are potentially confused break tig 4515 into up to 3 pieces: 0 3575 unique (length 3575) 3575 8329 repeat (length 4754) 8329 13824 unique (length 5495) Creating Unitig 113743 Creating Unitig 113744 Creating Unitig 113745 For tig 4515 unique region 0 3575 - 0/ 15 reads repeat/unique - unitig 113743 created. For tig 4515 repeat region 3575 8329 - 19/ 0 reads repeat/unique - unitig 113745 created. For tig 4515 unique region 8329 13824 - 0/ 2 reads repeat/unique - unitig 113744 created. Annotating repeats in reads for tig 4517/113047. Annotated with 61 overlaps. Scan reads to discard spanned repeats. discard region 16886:16286 - contained in read 206378 10727- 16872 thickest edges to the repeat regions: saved region 9287:15832 - closest 5' read 55195 ( +1257) 8030:14845 ( -987) saved region 9287:15832 - closest 3' read 206378 ( -1440) 10727:16872 ( +1040) search for confused edges: tig 4517 read 276176 pos 12135-16886 IS confused by 5' edge to read 292626 - best edge read 55195 len 2708 erate 0.0715 score 2514.38 - alt edge len 2148 erate 0.0103 score 2125.88 - absdiff 388.50 percdiff 16.7449 tig 4517 read 276176 pos 12135-16886 IS confused by 5' edge to read 357445 - best edge read 55195 len 2708 erate 0.0715 score 2514.38 - alt edge len 1107 erate 0.0562 score 1044.79 - absdiff 1469.59 percdiff 82.5807 saved region 9287:15832 - 2 best edges are potentially confused break tig 4517 into up to 3 pieces: 0 8787 unique (length 8787) 8787 16332 repeat (length 7545) 16332 36307 unique (length 19975) Creating Unitig 113746 Creating Unitig 113747 Creating Unitig 113748 For tig 4517 unique region 0 8787 - 0/ 16 reads repeat/unique - unitig 113746 created. For tig 4517 repeat region 8787 16332 - 3/ 0 reads repeat/unique - unitig 113747 created. For tig 4517 unique region 16332 36307 - 0/ 20 reads repeat/unique - unitig 113748 created. Annotating repeats in reads for tig 4519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4525/113047. Annotated with 122 overlaps. Scan reads to discard spanned repeats. discard region 7910:11139 - contained in read 91410 1716- 33905 discard region 16040:26508 - contained in read 91410 1716- 33905 discard region 26863:33905 - contained in read 91410 1716- 33905 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4529/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15596:16133 - contained in read 197414 10414- 17133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4538/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4548/113047. Annotated with 188 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5822:11894 - closest 5' read 174567 ( +0) 5822:11860 ( -34) saved region 5822:11894 - closest 3' read 129971 ( -4907) 10729:16722 ( +4828) search for confused edges: tig 4548 read 129972 pos 10743-16698 IS confused by 3' edge to read 563905 - best edge read 77820 len 1046 erate 0.0641 score 978.95 - alt edge len 1046 erate 0.0746 score 967.97 - absdiff 10.98 percdiff 1.1282 tig 4548 read 129972 pos 10743-16698 IS confused by 3' edge to read 623127 - best edge read 77820 len 1046 erate 0.0641 score 978.95 - alt edge len 791 erate 0.0695 score 736.03 - absdiff 242.93 percdiff 28.3299 tig 4548 read 129972 pos 10743-16698 IS confused by 3' edge to read 645430 - best edge read 77820 len 1046 erate 0.0641 score 978.95 - alt edge len 921 erate 0.0651 score 861.04 - absdiff 117.91 percdiff 12.8162 tig 4548 read 129972 pos 10743-16698 IS confused by 3' edge to read 710585 - best edge read 77820 len 1046 erate 0.0641 score 978.95 - alt edge len 977 erate 0.0619 score 916.52 - absdiff 62.43 percdiff 6.5870 saved region 5822:11894 - 4 best edges are potentially confused break tig 4548 into up to 3 pieces: 0 5322 unique (length 5322) 5322 12394 repeat (length 7072) 12394 19317 unique (length 6923) Creating Unitig 113749 Creating Unitig 113750 Creating Unitig 113751 For tig 4548 unique region 0 5322 - 0/ 4 reads repeat/unique - unitig 113749 created. For tig 4548 repeat region 5322 12394 - 5/ 0 reads repeat/unique - unitig 113750 created. For tig 4548 unique region 12394 19317 - 0/ 13 reads repeat/unique - unitig 113751 created. Annotating repeats in reads for tig 4549/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4552/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4554/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 14588:12783 - contained in read 610409 9355- 14693 thickest edges to the repeat regions: saved region 7622:12520 - closest 5' read 406384 ( +7122) 500:10740 ( -1780) saved region 7622:12520 - closest 3' read 610409 ( -1733) 9355:14693 ( +2173) search for confused edges: discard region 7622:12520 - no confusion in best edges Annotating repeats in reads for tig 4564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4572/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4574/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4578/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4585/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1014:2362 - contained in read 532508 0- 7153 discard region 11105:12596 - contained in read 99002 6722- 13294 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4591/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 2130:2990 - contained in read 534908 358- 6329 discard region 8620:10820 - contained in read 690553 7023- 13589 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4598/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:2729 - contained in read 104439 0- 5595 discard region 7508:8519 - contained in read 355243 63- 9286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4599/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 1451:7161 - contained in read 140498 103- 7161 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4640/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4646/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3196:5071 - contained in read 282563 0- 7178 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4671/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 4076:3342 - contained in read 338864 0- 5833 discard region 8317:9606 - contained in read 644716 5805- 13441 thickest edges to the repeat regions: saved region 4128:7427 - closest read 245835 ( +19) 4109:7809 ( +382) (contained) saved region 4128:7427 - closest 5' read 245835 ( +19) 4109:7809 ( +382) saved region 4128:7427 - closest 3' read 245835 ( +19) 4109:7809 ( +382) saved region 10802:16230 - closest 5' read 644714 ( +4774) 6028:13673 ( -2557) saved region 10802:16230 - closest 3' read 568706 ( -444) 11246:17028 ( +798) search for confused edges: tig 4671 read 568706 pos 11246-17028 NOT confused by 5' edge to read 338868 - best edge read 589194 len 4667 erate 0.0617 score 4379.05 - alt edge len 1609 erate 0.0609 score 1511.01 - absdiff 2868.03 percdiff 97.3856 discard region 4128:7427 - no confusion in best edges discard region 10802:16230 - no confusion in best edges Annotating repeats in reads for tig 4692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4695/113047. Annotated with 126 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8267 - closest 5' read 83517 ( +0) 0:6918 ( -1349) saved region 0:8267 - closest 3' read 579196 ( -94) 94:9570 ( +1303) search for confused edges: discard region 0:8267 - no confusion in best edges Annotating repeats in reads for tig 4703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4720/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 11496:12354 - contained in read 341441 5985- 14337 discard region 13993:14624 - contained in read 692226 9162- 19046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4724/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4725/113047. Annotated with 196 overlaps. Scan reads to discard spanned repeats. discard region 2537:4274 - contained in read 597224 5- 12673 thickest edges to the repeat regions: saved region 11712:16867 - closest 5' read 597224 (+11707) 5:12673 ( -4194) saved region 11712:16867 - closest 3' read 448077 ( -157) 11869:19406 ( +2539) search for confused edges: tig 4725 read 597224 pos 5-12673 IS confused by 3' edge to read 30904 - best edge read 448077 len 804 erate 0.0669 score 750.21 - alt edge len 502 erate 0.0680 score 467.86 - absdiff 282.35 percdiff 46.3597 tig 4725 read 597224 pos 5-12673 IS confused by 3' edge to read 207509 - best edge read 448077 len 804 erate 0.0669 score 750.21 - alt edge len 762 erate 0.0617 score 714.98 - absdiff 35.23 percdiff 4.8086 saved region 11712:16867 - 2 best edges are potentially confused break tig 4725 into up to 3 pieces: 0 11212 unique (length 11212) 11212 17367 repeat (length 6155) 17367 20997 unique (length 3630) Creating Unitig 113752 Creating Unitig 113753 Creating Unitig 113754 For tig 4725 unique region 0 11212 - 0/ 25 reads repeat/unique - unitig 113752 created. For tig 4725 repeat region 11212 17367 - 3/ 0 reads repeat/unique - unitig 113754 created. For tig 4725 unique region 17367 20997 - 0/ 9 reads repeat/unique - unitig 113753 created. Annotating repeats in reads for tig 4728/113047. Annotated with 146 overlaps. Scan reads to discard spanned repeats. discard region 5523:6698 - contained in read 563905 2- 7699 thickest edges to the repeat regions: saved region 0:5444 - closest 5' read 441653 ( +0) 0:3310 ( -2134) saved region 0:5444 - closest 3' read 563905 ( -2) 2:7699 ( +2255) search for confused edges: discard region 0:5444 - no confusion in best edges Annotating repeats in reads for tig 4735/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 647:4707 - closest read 107382 ( +647) 0:4707 ( +0) (contained) saved region 647:4707 - closest 5' read 107382 ( +647) 0:4707 ( +0) saved region 647:4707 - closest 3' read 107382 ( +647) 0:4707 ( +0) saved region 9530:10549 - closest 5' read 22289 ( +6331) 3199:10520 ( -29) saved region 9530:10549 - closest 3' read 129617 ( -212) 9742:16163 ( +5614) search for confused edges: tig 4735 read 22289 pos 3199-10520 IS confused by 3' edge to read 33548 - best edge read 107382 len 1438 erate 0.0515 score 1363.94 - alt edge len 1327 erate 0.0743 score 1228.40 - absdiff 135.54 percdiff 10.4569 tig 4735 read 22289 pos 3199-10520 IS confused by 3' edge to read 261003 - best edge read 107382 len 1438 erate 0.0515 score 1363.94 - alt edge len 1304 erate 0.0616 score 1223.67 - absdiff 140.27 percdiff 10.8416 tig 4735 read 22289 pos 3199-10520 IS confused by 3' edge to read 299858 - best edge read 107382 len 1438 erate 0.0515 score 1363.94 - alt edge len 877 erate 0.0217 score 857.97 - absdiff 505.97 percdiff 45.5440 tig 4735 read 22289 pos 3199-10520 IS confused by 3' edge to read 706572 - best edge read 107382 len 1438 erate 0.0515 score 1363.94 - alt edge len 1277 erate 0.0597 score 1200.76 - absdiff 163.18 percdiff 12.7250 tig 4735 read 129617 pos 9742-16163 IS confused by 3' edge to read 22292 - best edge read 22288 len 779 erate 0.0634 score 729.61 - alt edge len 775 erate 0.0648 score 724.78 - absdiff 4.83 percdiff 0.6644 tig 4735 read 129617 pos 9742-16163 IS confused by 3' edge to read 163237 - best edge read 22288 len 779 erate 0.0634 score 729.61 - alt edge len 736 erate 0.0653 score 687.94 - absdiff 41.67 percdiff 5.8795 saved region 647:4707 - 4 best edges are potentially confused saved region 9530:10549 - 2 best edges are potentially confused break tig 4735 into up to 5 pieces: 0 147 unique (length 147) 147 5207 repeat (length 5060) 5207 9030 unique (length 3823) 9030 11049 repeat (length 2019) 11049 28416 unique (length 17367) Creating Unitig 113755 Creating Unitig 113756 Creating Unitig 113757 Creating Unitig 113758 For tig 4735 unique region 0 147 - 0/ 1 reads repeat/unique - unitig 113755 created. For tig 4735 repeat region 147 5207 - 29/ 0 reads repeat/unique - unitig 113756 created. For tig 4735 unique region 5207 9030 - 0/ 2 reads repeat/unique - unitig 113757 created. For tig 4735 repeat region 9030 11049 - 0/ 0 repeat/unique reads - no new unitig created. For tig 4735 unique region 11049 28416 - 0/ 22 reads repeat/unique - unitig 113758 created. Annotating repeats in reads for tig 4738/113047. Annotated with 81 overlaps. Scan reads to discard spanned repeats. discard region 6649:8993 - contained in read 40257 5089- 12394 thickest edges to the repeat regions: saved region 4685:6584 - closest 5' read 578037 ( +3134) 1551:6527 ( -57) saved region 4685:6584 - closest 3' read 40261 ( -400) 5085:7836 ( +1252) search for confused edges: tig 4738 read 40259 pos 5094-12413 IS confused by 5' edge to read 118202 - best edge read 455621 len 1400 erate 0.0622 score 1312.92 - alt edge len 1015 erate 0.0523 score 961.92 - absdiff 351.00 percdiff 30.8598 tig 4738 read 40259 pos 5094-12413 IS confused by 5' edge to read 137230 - best edge read 455621 len 1400 erate 0.0622 score 1312.92 - alt edge len 1460 erate 0.0507 score 1385.98 - absdiff 73.06 percdiff 5.4139 tig 4738 read 40259 pos 5094-12413 IS confused by 5' edge to read 204314 - best edge read 455621 len 1400 erate 0.0622 score 1312.92 - alt edge len 1451 erate 0.0710 score 1347.98 - absdiff 35.06 percdiff 2.6351 tig 4738 read 40259 pos 5094-12413 IS confused by 5' edge to read 260463 - best edge read 455621 len 1400 erate 0.0622 score 1312.92 - alt edge len 1392 erate 0.0701 score 1294.42 - absdiff 18.50 percdiff 1.4190 tig 4738 read 40259 pos 5094-12413 IS confused by 5' edge to read 265437 - best edge read 455621 len 1400 erate 0.0622 score 1312.92 - alt edge len 1217 erate 0.0444 score 1162.97 - absdiff 149.95 percdiff 12.1132 saved region 4685:6584 - 5 best edges are potentially confused break tig 4738 into up to 3 pieces: 0 4185 unique (length 4185) 4185 7084 repeat (length 2899) 7084 25242 unique (length 18158) Creating Unitig 113759 Creating Unitig 113760 Creating Unitig 113761 For tig 4738 unique region 0 4185 - 0/ 3 reads repeat/unique - unitig 113759 created. For tig 4738 repeat region 4185 7084 - 1/ 0 reads repeat/unique - unitig 113761 created. For tig 4738 unique region 7084 25242 - 0/ 31 reads repeat/unique - unitig 113760 created. Annotating repeats in reads for tig 4745/113047. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 2530:10215 - contained in read 68391 225- 10215 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4767/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 5798:7782 - contained in read 338020 578- 8363 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4787/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2358:4021 - contained in read 677061 1198- 6867 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4795/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4797/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:653 - contained in read 96111 0- 4935 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4800/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1307:10498 - closest 5' read 373389 ( +1076) 231:9137 ( -1361) saved region 1307:10498 - closest 3' read 217084 ( -1509) 2816:10498 ( +0) search for confused edges: tig 4800 read 373389 pos 231-9137 NOT confused by 3' edge to read 80307 - best edge read 217084 len 6293 erate 0.0130 score 6211.19 - alt edge len 3288 erate 0.0109 score 3252.16 - absdiff 2959.03 percdiff 62.5366 tig 4800 read 373389 pos 231-9137 NOT confused by 3' edge to read 601569 - best edge read 217084 len 6293 erate 0.0130 score 6211.19 - alt edge len 2788 erate 0.0301 score 2704.08 - absdiff 3507.11 percdiff 78.6764 discard region 1307:10498 - no confusion in best edges Annotating repeats in reads for tig 4805/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19616:23977 - closest read 251771 ( +0) 19616:26196 ( +2219) (contained) saved region 19616:23977 - closest 5' read 251771 ( +0) 19616:26196 ( +2219) saved region 19616:23977 - closest 3' read 251771 ( +0) 19616:26196 ( +2219) search for confused edges: discard region 19616:23977 - no confusion in best edges Annotating repeats in reads for tig 4807/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1848:3069 - contained in read 637378 0- 7521 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4814/113047. Annotated with 170 overlaps. Scan reads to discard spanned repeats. discard region 0:1422 - contained in read 195437 0- 6953 thickest edges to the repeat regions: saved region 6849:9213 - closest read 713208 ( +15) 6834:13081 ( +3868) (contained) saved region 6849:9213 - closest read 713209 ( +0) 6849:13075 ( +3862) (contained) saved region 6849:9213 - closest 5' read 713208 ( +15) 6834:13081 ( +3868) saved region 6849:9213 - closest 3' read 713208 ( +15) 6834:13081 ( +3868) search for confused edges: tig 4814 read 713210 pos 6863-13070 IS confused by 5' edge to read 143738 - best edge read 173479 len 2274 erate 0.0641 score 2128.24 - alt edge len 2213 erate 0.0578 score 2085.09 - absdiff 43.15 percdiff 2.0482 tig 4814 read 713210 pos 6863-13070 IS confused by 5' edge to read 330841 - best edge read 173479 len 2274 erate 0.0641 score 2128.24 - alt edge len 1389 erate 0.0462 score 1324.83 - absdiff 803.41 percdiff 46.5331 tig 4814 read 713210 pos 6863-13070 IS confused by 5' edge to read 659839 - best edge read 173479 len 2274 erate 0.0641 score 2128.24 - alt edge len 1378 erate 0.0456 score 1315.16 - absdiff 813.07 percdiff 47.2250 saved region 6849:9213 - 3 best edges are potentially confused break tig 4814 into up to 3 pieces: 0 6349 unique (length 6349) 6349 9713 repeat (length 3364) 9713 13153 unique (length 3440) Creating Unitig 113762 Creating Unitig 113763 Creating Unitig 113764 For tig 4814 unique region 0 6349 - 0/ 6 reads repeat/unique - unitig 113762 created. For tig 4814 repeat region 6349 9713 - 1/ 0 reads repeat/unique - unitig 113764 created. For tig 4814 unique region 9713 13153 - 0/ 7 reads repeat/unique - unitig 113763 created. Annotating repeats in reads for tig 4815/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 0:1427 - contained in read 496043 0- 3289 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4816/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 1345:4755 - contained in read 260741 208- 6455 thickest edges to the repeat regions: saved region 4954:12588 - closest 5' read 193377 ( +1149) 3805:9686 ( -2902) saved region 4954:12588 - closest 3' read 664789 ( -1311) 6265:12588 ( +0) search for confused edges: tig 4816 read 443093 pos 7640-16378 IS confused by 5' edge to read 664788 - best edge read 664789 len 4900 erate 0.0348 score 4729.48 - alt edge len 4409 erate 0.0396 score 4234.40 - absdiff 495.08 percdiff 11.0460 saved region 4954:12588 - 1 best edges are potentially confused break tig 4816 into up to 3 pieces: 0 4454 unique (length 4454) 4454 13088 repeat (length 8634) 13088 17294 unique (length 4206) Creating Unitig 113765 Creating Unitig 113766 Creating Unitig 113767 For tig 4816 unique region 0 4454 - 0/ 12 reads repeat/unique - unitig 113765 created. For tig 4816 repeat region 4454 13088 - 6/ 0 reads repeat/unique - unitig 113766 created. For tig 4816 unique region 13088 17294 - 0/ 2 reads repeat/unique - unitig 113767 created. Annotating repeats in reads for tig 4821/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 10935:14240 - contained in read 159658 8651- 15819 thickest edges to the repeat regions: saved region 2599:6632 - closest read 47592 ( +1278) 1321:6927 ( +295) (contained) saved region 2599:6632 - closest read 47593 ( +1274) 1325:6940 ( +308) (contained) saved region 2599:6632 - closest read 47591 ( +1270) 1329:6848 ( +216) (contained) saved region 2599:6632 - closest read 47594 ( +1268) 1331:6929 ( +297) (contained) saved region 2599:6632 - closest read 279223 ( +192) 2407:11902 ( +5270) (contained) saved region 2599:6632 - closest read 279221 ( +187) 2412:11893 ( +5261) (contained) saved region 2599:6632 - closest read 279222 ( +185) 2414:11862 ( +5230) (contained) saved region 2599:6632 - closest read 279220 ( +181) 2418:11199 ( +4567) (contained) saved region 2599:6632 - closest 5' read 279223 ( +192) 2407:11902 ( +5270) saved region 2599:6632 - closest 3' read 47592 ( +1278) 1321:6927 ( +295) search for confused edges: discard region 2599:6632 - no confusion in best edges Annotating repeats in reads for tig 4825/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5143:6340 - contained in read 677033 0- 7312 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4827/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3711:10289 - closest 5' read 196740 ( +607) 3104:7920 ( -2369) saved region 3711:10289 - closest 3' read 610661 ( -2267) 5978:10377 ( +88) search for confused edges: discard region 3711:10289 - no confusion in best edges Annotating repeats in reads for tig 4829/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9992:13123 - closest read 287856 ( +0) 9992:14541 ( +1418) (contained) saved region 9992:13123 - closest 5' read 287856 ( +0) 9992:14541 ( +1418) saved region 9992:13123 - closest 3' read 287856 ( +0) 9992:14541 ( +1418) search for confused edges: discard region 9992:13123 - no confusion in best edges Annotating repeats in reads for tig 4835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4849/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1384:5713 - contained in read 655289 10- 5713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4855/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3028:0 - contained in read 344255 0- 3741 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4865/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:1195 - contained in read 45431 0- 6652 discard region 1146:3266 - contained in read 45431 0- 6652 discard region 4348:5243 - contained in read 45431 0- 6652 discard region 6653:6040 - contained in read 45431 0- 6652 discard region 6653:6052 - contained in read 45431 0- 6652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4875/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4890/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7817 - closest 5' read 680549 ( +0) 0:7658 ( -159) saved region 0:7817 - closest 3' read 278613 ( -250) 250:7817 ( +0) search for confused edges: tig 4890 read 680549 pos 0-7658 NOT confused by 3' edge to read 80240 - best edge read 680552 len 7467 erate 0.0288 score 7251.95 - alt edge len 3818 erate 0.0231 score 3729.80 - absdiff 3522.15 percdiff 64.1454 tig 4890 read 680549 pos 0-7658 NOT confused by 3' edge to read 663918 - best edge read 680552 len 7467 erate 0.0288 score 7251.95 - alt edge len 5171 erate 0.0139 score 5099.12 - absdiff 2152.83 percdiff 34.8606 tig 4890 read 680552 pos 94-7738 NOT confused by 5' edge to read 80240 - best edge read 680551 len 7452 erate 0.0254 score 7262.72 - alt edge len 3918 erate 0.0195 score 3841.60 - absdiff 3421.12 percdiff 61.6178 tig 4890 read 680552 pos 94-7738 IS confused by 5' edge to read 663918 - best edge read 680551 len 7452 erate 0.0254 score 7262.72 - alt edge len 5276 erate 0.0120 score 5212.69 - absdiff 2050.03 percdiff 32.8652 tig 4890 read 680551 pos 200-7808 NOT confused by 3' edge to read 80240 - best edge read 278613 len 7481 erate 0.0201 score 7330.63 - alt edge len 3974 erate 0.0237 score 3879.82 - absdiff 3450.82 percdiff 61.5643 tig 4890 read 680551 pos 200-7808 NOT confused by 5' edge to read 294034 - best edge read 680552 len 7457 erate 0.0254 score 7267.59 - alt edge len 4312 erate 0.0733 score 3995.93 - absdiff 3271.66 percdiff 58.0930 tig 4890 read 680551 pos 200-7808 NOT confused by 5' edge to read 501221 - best edge read 680552 len 7457 erate 0.0254 score 7267.59 - alt edge len 4229 erate 0.0726 score 3921.97 - absdiff 3345.62 percdiff 59.7989 tig 4890 read 680551 pos 200-7808 IS confused by 3' edge to read 663918 - best edge read 278613 len 7481 erate 0.0201 score 7330.63 - alt edge len 5333 erate 0.0141 score 5257.80 - absdiff 2072.83 percdiff 32.9322 tig 4890 read 278613 pos 250-7817 NOT confused by 3' edge to read 294034 - best edge read 680551 len 7469 erate 0.0201 score 7318.87 - alt edge len 4258 erate 0.0695 score 3962.07 - absdiff 3356.80 percdiff 59.5128 tig 4890 read 278613 pos 250-7817 NOT confused by 3' edge to read 294035 - best edge read 680551 len 7469 erate 0.0201 score 7318.87 - alt edge len 4309 erate 0.0704 score 4005.65 - absdiff 3313.23 percdiff 58.5142 tig 4890 read 278613 pos 250-7817 NOT confused by 3' edge to read 501221 - best edge read 680551 len 7469 erate 0.0201 score 7318.87 - alt edge len 4173 erate 0.0635 score 3908.01 - absdiff 3410.86 percdiff 60.7623 saved region 0:7817 - 2 best edges are potentially confused Annotating repeats in reads for tig 4896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4906/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9861:6596 - contained in read 61571 2577- 10520 thickest edges to the repeat regions: saved region 14492:15675 - closest read 294760 ( +7276) 7216:15680 ( +5) (contained) saved region 14492:15675 - closest 5' read 294760 ( +7276) 7216:15680 ( +5) saved region 14492:15675 - closest 3' read 294760 ( +7276) 7216:15680 ( +5) search for confused edges: discard region 14492:15675 - no confusion in best edges Annotating repeats in reads for tig 4919/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:2249 - contained in read 463884 0- 4257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4923/113047. Annotated with 1161 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17443:23565 - closest 5' read 554900 ( +7643) 9800:18254 ( -5311) saved region 17443:23565 - closest 3' read 605986 ( -16) 17459:26446 ( +2881) search for confused edges: tig 4923 read 554900 pos 9800-18254 IS confused by 3' edge to read 213134 - best edge read 605986 len 778 erate 0.0452 score 742.83 - alt edge len 777 erate 0.0746 score 719.04 - absdiff 23.80 percdiff 3.2559 tig 4923 read 554900 pos 9800-18254 IS confused by 3' edge to read 510862 - best edge read 605986 len 778 erate 0.0452 score 742.83 - alt edge len 773 erate 0.0707 score 718.35 - absdiff 24.49 percdiff 3.3515 tig 4923 read 554900 pos 9800-18254 IS confused by 3' edge to read 581053 - best edge read 605986 len 778 erate 0.0452 score 742.83 - alt edge len 771 erate 0.0613 score 723.74 - absdiff 19.10 percdiff 2.6043 saved region 17443:23565 - 3 best edges are potentially confused break tig 4923 into up to 3 pieces: 0 16943 unique (length 16943) 16943 24065 repeat (length 7122) 24065 26682 unique (length 2617) Creating Unitig 113768 Creating Unitig 113769 Creating Unitig 113770 For tig 4923 unique region 0 16943 - 0/ 22 reads repeat/unique - unitig 113768 created. For tig 4923 repeat region 16943 24065 - 7/ 0 reads repeat/unique - unitig 113770 created. For tig 4923 unique region 24065 26682 - 0/ 4 reads repeat/unique - unitig 113769 created. Annotating repeats in reads for tig 4926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4937/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 570:4015 - closest 5' read 285887 ( +570) 0:3983 ( -32) saved region 570:4015 - closest 3' read 686867 ( -1077) 1647:5763 ( +1748) search for confused edges: tig 4937 read 686867 pos 1647-5763 IS confused by 3' edge to read 471069 - best edge read 285887 len 2277 erate 0.0460 score 2172.26 - alt edge len 1281 erate 0.0645 score 1198.38 - absdiff 973.88 percdiff 57.7863 saved region 570:4015 - 1 best edges are potentially confused break tig 4937 into up to 3 pieces: 0 70 unique (length 70) 70 4515 repeat (length 4445) 4515 11217 unique (length 6702) Creating Unitig 113771 Creating Unitig 113772 Creating Unitig 113773 For tig 4937 unique region 0 70 - 0/ 5 reads repeat/unique - unitig 113771 created. For tig 4937 repeat region 70 4515 - 1/ 0 reads repeat/unique - unitig 113772 created. For tig 4937 unique region 4515 11217 - 0/ 8 reads repeat/unique - unitig 113773 created. Annotating repeats in reads for tig 4946/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 3894:9114 - contained in read 511687 1480- 9114 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4952/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8765:11889 - closest 5' read 711285 ( +5125) 3640:11103 ( -786) saved region 8765:11889 - closest 3' read 681616 ( -807) 9572:17144 ( +5255) search for confused edges: discard region 8765:11889 - no confusion in best edges Annotating repeats in reads for tig 4955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4963/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:3716 - contained in read 674439 0- 9952 discard region 6520:7021 - contained in read 674439 0- 9952 discard region 9852:8668 - contained in read 674439 0- 9952 discard region 9889:8703 - contained in read 674439 0- 9952 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4982/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13322:17499 - closest 5' read 20056 ( +8155) 5167:16561 ( -938) saved region 13322:17499 - closest 3' read 113197 ( -1203) 14525:22391 ( +4892) saved region 20289:25009 - closest 5' read 334741 ( +1880) 18409:22870 ( -2139) saved region 20289:25009 - closest 3' read 102193 ( -33) 20322:27428 ( +2419) search for confused edges: tig 4982 read 113197 pos 14525-22391 IS confused by 3' edge to read 219900 - best edge read 102193 len 1998 erate 0.0356 score 1926.87 - alt edge len 1870 erate 0.0396 score 1795.95 - absdiff 130.92 percdiff 7.0336 tig 4982 read 113197 pos 14525-22391 IS confused by 3' edge to read 470228 - best edge read 102193 len 1998 erate 0.0356 score 1926.87 - alt edge len 1337 erate 0.0404 score 1282.99 - absdiff 643.89 percdiff 40.1193 discard region 13322:17499 - no confusion in best edges saved region 20289:25009 - 2 best edges are potentially confused break tig 4982 into up to 3 pieces: 0 19789 unique (length 19789) 19789 25509 repeat (length 5720) 25509 27428 unique (length 1919) Creating Unitig 113774 Creating Unitig 113775 Creating Unitig 113776 For tig 4982 unique region 0 19789 - 0/ 21 reads repeat/unique - unitig 113774 created. For tig 4982 repeat region 19789 25509 - 9/ 0 reads repeat/unique - unitig 113775 created. For tig 4982 unique region 25509 27428 - 0/ 11 reads repeat/unique - unitig 113776 created. Annotating repeats in reads for tig 4983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4989/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6902:9902 - closest read 321595 ( +26) 6876:12189 ( +2287) (contained) saved region 6902:9902 - closest 5' read 321595 ( +26) 6876:12189 ( +2287) saved region 6902:9902 - closest 3' read 321595 ( +26) 6876:12189 ( +2287) search for confused edges: discard region 6902:9902 - no confusion in best edges Annotating repeats in reads for tig 4991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5008/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13617:17049 - closest 5' read 164145 ( +3115) 10502:16912 ( -137) saved region 13617:17049 - closest 3' read 86935 ( -422) 14039:17061 ( +12) search for confused edges: discard region 13617:17049 - no confusion in best edges Annotating repeats in reads for tig 5011/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5014/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5018/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6626:7327 - contained in read 91586 1851- 8319 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5028/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 11124:11722 - contained in read 146680 10545- 12662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5030/113047. Annotated with 61 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5111:11852 - closest 5' read 309806 ( +310) 4801:11838 ( -14) saved region 5111:11852 - closest 3' read 564697 ( -26) 5137:13077 ( +1225) search for confused edges: discard region 5111:11852 - no confusion in best edges Annotating repeats in reads for tig 5031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5033/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 15261:19635 - contained in read 23518 12695- 19635 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5034/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5977:8101 - closest read 573790 ( +4510) 1467:8101 ( +0) (contained) saved region 5977:8101 - closest 5' read 573790 ( +4510) 1467:8101 ( +0) saved region 5977:8101 - closest 3' read 573790 ( +4510) 1467:8101 ( +0) search for confused edges: tig 5034 read 70742 pos 7381-14326 IS confused by 3' edge to read 214998 - best edge read 573790 len 710 erate 0.0426 score 679.75 - alt edge len 705 erate 0.0342 score 680.89 - absdiff 1.13 percdiff 0.1668 saved region 5977:8101 - 1 best edges are potentially confused break tig 5034 into up to 3 pieces: 0 5477 unique (length 5477) 5477 8601 repeat (length 3124) 8601 22287 unique (length 13686) Creating Unitig 113777 Creating Unitig 113778 Creating Unitig 113779 For tig 5034 unique region 0 5477 - 0/ 8 reads repeat/unique - unitig 113777 created. For tig 5034 repeat region 5477 8601 - 2/ 0 reads repeat/unique - unitig 113778 created. For tig 5034 unique region 8601 22287 - 0/ 18 reads repeat/unique - unitig 113779 created. Annotating repeats in reads for tig 5035/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 54:3299 - contained in read 246136 0- 5609 discard region 16333:17750 - contained in read 24360 12748- 17750 thickest edges to the repeat regions: saved region 4291:8284 - closest read 676256 ( +232) 4059:9174 ( +890) (contained) saved region 4291:8284 - closest read 368039 ( +29) 4262:13613 ( +5329) (contained) saved region 4291:8284 - closest 5' read 368039 ( +29) 4262:13613 ( +5329) saved region 4291:8284 - closest 3' read 676256 ( +232) 4059:9174 ( +890) saved region 12120:13613 - closest read 368039 ( +7858) 4262:13613 ( +0) (contained) saved region 12120:13613 - closest 5' read 368039 ( +7858) 4262:13613 ( +0) saved region 12120:13613 - closest 3' read 368039 ( +7858) 4262:13613 ( +0) search for confused edges: discard region 4291:8284 - no confusion in best edges discard region 12120:13613 - no confusion in best edges Annotating repeats in reads for tig 5037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5043/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 5086:10617 - contained in read 510839 2161- 10764 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5049/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6876:9482 - closest 5' read 654997 ( +6280) 596:8341 ( -1141) saved region 6876:9482 - closest 3' read 260463 ( -64) 6940:21669 (+12187) search for confused edges: tig 5049 read 654995 pos 667-8336 IS confused by 5' edge to read 118202 - best edge read 260463 len 1406 erate 0.0548 score 1328.95 - alt edge len 1018 erate 0.0432 score 974.02 - absdiff 354.93 percdiff 30.8235 tig 5049 read 654995 pos 667-8336 IS confused by 5' edge to read 137230 - best edge read 260463 len 1406 erate 0.0548 score 1328.95 - alt edge len 1445 erate 0.0651 score 1350.93 - absdiff 21.98 percdiff 1.6403 tig 5049 read 654995 pos 667-8336 IS confused by 5' edge to read 265437 - best edge read 260463 len 1406 erate 0.0548 score 1328.95 - alt edge len 1223 erate 0.0384 score 1176.04 - absdiff 152.91 percdiff 12.2088 saved region 6876:9482 - 3 best edges are potentially confused break tig 5049 into up to 3 pieces: 0 6376 unique (length 6376) 6376 9982 repeat (length 3606) 9982 29998 unique (length 20016) Creating Unitig 113780 Creating Unitig 113781 For tig 5049 unique region 0 6376 - 0/ 7 reads repeat/unique - unitig 113780 created. For tig 5049 repeat region 6376 9982 - 0/ 0 repeat/unique reads - no new unitig created. For tig 5049 unique region 9982 29998 - 0/ 19 reads repeat/unique - unitig 113781 created. Annotating repeats in reads for tig 5050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5052/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7635:11302 - contained in read 485991 4644- 17083 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5055/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 6471:8790 - contained in read 300553 4366- 10558 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5061/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5062/113047. Annotated with 125 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 641:10537 - closest 5' read 34066 ( +552) 89:8391 ( -2146) saved region 641:10537 - closest 3' read 599837 ( -1289) 1930:11071 ( +534) search for confused edges: tig 5062 read 34066 pos 89-8391 NOT confused by 5' edge to read 356402 - best edge read 599837 len 6376 erate 0.0744 score 5901.63 - alt edge len 1880 erate 0.0434 score 1798.41 - absdiff 4103.22 percdiff 106.5766 tig 5062 read 34066 pos 89-8391 NOT confused by 5' edge to read 356403 - best edge read 599837 len 6376 erate 0.0744 score 5901.63 - alt edge len 1958 erate 0.0474 score 1865.19 - absdiff 4036.43 percdiff 103.9405 tig 5062 read 599837 pos 1930-11071 IS confused by 5' edge to read 379302 - best edge read 34066 len 6288 erate 0.0710 score 5841.55 - alt edge len 4181 erate 0.0165 score 4112.01 - absdiff 1729.54 percdiff 34.7521 tig 5062 read 599837 pos 1930-11071 NOT confused by 5' edge to read 711493 - best edge read 34066 len 6288 erate 0.0710 score 5841.55 - alt edge len 2178 erate 0.0290 score 2114.84 - absdiff 3726.71 percdiff 93.6785 saved region 641:10537 - 1 best edges are potentially confused break tig 5062 into up to 3 pieces: 0 141 unique (length 141) 141 11037 repeat (length 10896) 11037 12974 unique (length 1937) Creating Unitig 113782 Creating Unitig 113783 Creating Unitig 113784 For tig 5062 unique region 0 141 - 0/ 4 reads repeat/unique - unitig 113782 created. For tig 5062 repeat region 141 11037 - 14/ 0 reads repeat/unique - unitig 113783 created. For tig 5062 unique region 11037 12974 - 0/ 7 reads repeat/unique - unitig 113784 created. Annotating repeats in reads for tig 5064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5069/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 1672:3103 - contained in read 69721 0- 4890 discard region 3540:7569 - contained in read 169335 925- 8506 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5074/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5080/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 4128:6097 - contained in read 504589 3251- 10700 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5085/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 22093:23846 - contained in read 273714 19918- 29164 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5087/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5088/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13083:13665 - contained in read 318571 7536- 15522 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5091/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:2152 - contained in read 189932 0- 4083 discard region 4220:5532 - contained in read 178424 2787- 9920 discard region 10632:12764 - contained in read 45165 9328- 12764 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5093/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 8464:14269 - contained in read 45582 7362- 14269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5094/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11524:13997 - closest read 345997 ( +3) 11521:13997 ( +0) (contained) saved region 11524:13997 - closest 5' read 345997 ( +3) 11521:13997 ( +0) saved region 11524:13997 - closest 3' read 345997 ( +3) 11521:13997 ( +0) search for confused edges: discard region 11524:13997 - no confusion in best edges Annotating repeats in reads for tig 5095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5102/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7701:9684 - contained in read 289794 6251- 12397 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5104/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3651:7987 - contained in read 155691 1992- 7987 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5105/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6203:7700 - contained in read 604115 2510- 8443 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5106/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9285:16549 - closest 5' read 713359 ( +0) 9285:15634 ( -915) saved region 9285:16549 - closest 3' read 397372 ( -470) 9755:20412 ( +3863) search for confused edges: tig 5106 read 373270 pos 9316-16316 NOT confused by 5' edge to read 335591 - best edge read 397372 len 6360 erate 0.0592 score 5983.49 - alt edge len 3719 erate 0.0175 score 3653.92 - absdiff 2329.57 percdiff 48.3443 tig 5106 read 373270 pos 9316-16316 NOT confused by 5' edge to read 335592 - best edge read 397372 len 6360 erate 0.0592 score 5983.49 - alt edge len 3861 erate 0.0363 score 3720.85 - absdiff 2262.64 percdiff 46.6316 tig 5106 read 373270 pos 9316-16316 NOT confused by 5' edge to read 494647 - best edge read 397372 len 6360 erate 0.0592 score 5983.49 - alt edge len 2486 erate 0.0258 score 2421.86 - absdiff 3561.63 percdiff 84.7467 tig 5106 read 397372 pos 9755-20412 IS confused by 3' edge to read 42146 - best edge read 373270 len 6491 erate 0.0593 score 6106.08 - alt edge len 5183 erate 0.0708 score 4816.04 - absdiff 1290.04 percdiff 23.6225 tig 5106 read 397372 pos 9755-20412 IS confused by 3' edge to read 604994 - best edge read 373270 len 6491 erate 0.0593 score 6106.08 - alt edge len 5982 erate 0.0622 score 5609.92 - absdiff 496.16 percdiff 8.4699 saved region 9285:16549 - 2 best edges are potentially confused break tig 5106 into up to 3 pieces: 0 8785 unique (length 8785) 8785 17049 repeat (length 8264) 17049 20581 unique (length 3532) Creating Unitig 113785 Creating Unitig 113786 Creating Unitig 113787 For tig 5106 unique region 0 8785 - 0/ 24 reads repeat/unique - unitig 113785 created. For tig 5106 repeat region 8785 17049 - 36/ 0 reads repeat/unique - unitig 113786 created. For tig 5106 unique region 17049 20581 - 0/ 5 reads repeat/unique - unitig 113787 created. Annotating repeats in reads for tig 5107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5111/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5112/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5893:9660 - closest 5' read 642265 ( +937) 4956:7276 ( -2384) saved region 5893:9660 - closest 3' read 694912 ( -33) 5926:11712 ( +2052) search for confused edges: discard region 5893:9660 - no confusion in best edges Annotating repeats in reads for tig 5114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5115/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5163:4381 - contained in read 348777 0- 9515 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5119/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5122/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5125/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 2101:9210 - contained in read 248813 0- 18586 discard region 10094:16902 - contained in read 248813 0- 18586 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5131/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5132/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5134/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5135/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8998:8319 - contained in read 97191 4410- 13269 discard region 10542:11913 - contained in read 97191 4410- 13269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5142/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 274:922 - contained in read 62573 0- 7556 discard region 4881:5910 - contained in read 62573 0- 7556 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5145/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5146/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 6129:7828 - contained in read 63511 0- 11629 discard region 10229:10911 - contained in read 63511 0- 11629 discard region 20577:22234 - contained in read 707519 14611- 24389 discard region 23450:26452 - contained in read 493333 16925- 32501 thickest edges to the repeat regions: saved region 12573:18724 - closest read 63510 (+12143) 430:19122 ( +398) (contained) saved region 12573:18724 - closest read 712221 ( +3321) 9252:18724 ( +0) (contained) saved region 12573:18724 - closest read 168373 ( +0) 12573:19919 ( +1195) (contained) saved region 12573:18724 - closest 5' read 168373 ( +0) 12573:19919 ( +1195) saved region 12573:18724 - closest 3' read 63510 (+12143) 430:19122 ( +398) search for confused edges: discard region 12573:18724 - no confusion in best edges Annotating repeats in reads for tig 5147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5148/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5153/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12765:15310 - closest read 266390 ( +1627) 11138:15353 ( +43) (contained) saved region 12765:15310 - closest read 689859 ( +0) 12765:19759 ( +4449) (contained) saved region 12765:15310 - closest 5' read 689859 ( +0) 12765:19759 ( +4449) saved region 12765:15310 - closest 3' read 266390 ( +1627) 11138:15353 ( +43) search for confused edges: discard region 12765:15310 - no confusion in best edges Annotating repeats in reads for tig 5155/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 11518:13303 - contained in read 66323 7253- 13303 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5159/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6414:7160 - closest read 696518 ( +959) 5455:7162 ( +2) (contained) saved region 6414:7160 - closest read 622687 ( +823) 5591:7162 ( +2) (contained) saved region 6414:7160 - closest read 696517 ( +792) 5622:7161 ( +1) (contained) saved region 6414:7160 - closest 5' read 696518 ( +959) 5455:7162 ( +2) saved region 6414:7160 - closest 3' read 696518 ( +959) 5455:7162 ( +2) search for confused edges: discard region 6414:7160 - no confusion in best edges Annotating repeats in reads for tig 5160/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5162/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 16857:19174 - contained in read 176648 16304- 26818 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5163/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13401:12508 - contained in read 276206 8297- 13638 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5164/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5166/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5170/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5171/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 14934:15570 - contained in read 72411 5401- 18307 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5175/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5180/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1419:2837 - contained in read 601694 0- 4037 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5184/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8869:9742 - contained in read 671207 4660- 11446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5185/113047. Annotated with 157 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7726:15685 - closest 5' read 474786 ( +2121) 5605:12512 ( -3173) saved region 7726:15685 - closest 3' read 84214 ( -1695) 9421:17573 ( +1888) search for confused edges: tig 5185 read 548004 pos 10455-21049 IS confused by 5' edge to read 282003 - best edge read 474786 len 2049 erate 0.0316 score 1984.25 - alt edge len 1045 erate 0.0352 score 1008.22 - absdiff 976.04 percdiff 65.2328 tig 5185 read 548004 pos 10455-21049 IS confused by 5' edge to read 708191 - best edge read 474786 len 2049 erate 0.0316 score 1984.25 - alt edge len 1055 erate 0.0212 score 1032.63 - absdiff 951.62 percdiff 63.0861 saved region 7726:15685 - 2 best edges are potentially confused break tig 5185 into up to 3 pieces: 0 7226 unique (length 7226) 7226 16185 repeat (length 8959) 16185 21613 unique (length 5428) Creating Unitig 113788 Creating Unitig 113789 Creating Unitig 113790 For tig 5185 unique region 0 7226 - 0/ 17 reads repeat/unique - unitig 113788 created. For tig 5185 repeat region 7226 16185 - 3/ 0 reads repeat/unique - unitig 113790 created. For tig 5185 unique region 16185 21613 - 0/ 10 reads repeat/unique - unitig 113789 created. Annotating repeats in reads for tig 5186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5193/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5194/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4190:5515 - contained in read 270066 260- 6807 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5195/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5196/113047. Annotated with 73 overlaps. Scan reads to discard spanned repeats. discard region 5101:8465 - contained in read 245772 0- 10750 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5198/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 5933:13133 - contained in read 599545 3616- 14414 discard region 15870:13674 - contained in read 599545 3616- 14414 thickest edges to the repeat regions: saved region 16997:20434 - closest read 238310 ( +407) 16590:22747 ( +2313) (contained) saved region 16997:20434 - closest read 238311 ( +307) 16690:22992 ( +2558) (contained) saved region 16997:20434 - closest 5' read 238311 ( +307) 16690:22992 ( +2558) saved region 16997:20434 - closest 3' read 238310 ( +407) 16590:22747 ( +2313) search for confused edges: discard region 16997:20434 - no confusion in best edges Annotating repeats in reads for tig 5202/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11022:11823 - contained in read 489982 7894- 15458 discard region 23078:25204 - contained in read 413460 16708- 27668 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5205/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5206/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 7188:11901 - contained in read 580384 6623- 12470 discard region 13336:14232 - contained in read 370902 8280- 17011 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5211/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1682 - contained in read 83816 0- 7599 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5213/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5223/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5227/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13039:16310 - closest read 352481 ( +0) 13039:20090 ( +3780) (contained) saved region 13039:16310 - closest 5' read 352481 ( +0) 13039:20090 ( +3780) saved region 13039:16310 - closest 3' read 352481 ( +0) 13039:20090 ( +3780) search for confused edges: discard region 13039:16310 - no confusion in best edges Annotating repeats in reads for tig 5228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5230/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5233/113047. Annotated with 111 overlaps. Scan reads to discard spanned repeats. discard region 6939:9772 - contained in read 457092 696- 12865 discard region 9803:14255 - contained in read 177849 7314- 17954 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5243/113047. Annotated with 856 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8859 - closest 5' read 38399 ( +0) 0:6510 ( -2349) saved region 0:8859 - closest 3' read 94600 ( -3556) 3556:10975 ( +2116) search for confused edges: tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 16358 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 1746 erate 0.0345 score 1685.76 - absdiff 932.07 percdiff 43.3157 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 69514 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 1445 erate 0.0353 score 1393.99 - absdiff 1223.84 percdiff 61.0116 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 73835 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2158 erate 0.0538 score 2041.90 - absdiff 575.93 percdiff 24.7194 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 86124 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 1935 erate 0.0477 score 1842.70 - absdiff 775.13 percdiff 34.7550 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 137335 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2398 erate 0.0626 score 2247.89 - absdiff 369.94 percdiff 15.2061 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 201858 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2317 erate 0.0566 score 2185.86 - absdiff 431.97 percdiff 17.9850 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 212668 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 1045 erate 0.0737 score 967.98 - absdiff 1649.85 percdiff 92.0207 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 293555 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2262 erate 0.0500 score 2148.90 - absdiff 468.93 percdiff 19.6751 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 478039 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 1469 erate 0.0480 score 1398.49 - absdiff 1219.34 percdiff 60.7194 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 532060 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2424 erate 0.0666 score 2262.56 - absdiff 355.27 percdiff 14.5590 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 545260 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 900 erate 0.0334 score 869.94 - absdiff 1747.89 percdiff 100.2296 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 546407 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2429 erate 0.0614 score 2279.86 - absdiff 337.97 percdiff 13.8012 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 628000 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 1389 erate 0.0362 score 1338.72 - absdiff 1279.11 percdiff 64.6579 tig 5243 read 94597 pos 3557-10974 IS confused by 5' edge to read 697592 - best edge read 38399 len 2787 erate 0.0607 score 2617.83 - alt edge len 2468 erate 0.0738 score 2285.86 - absdiff 331.97 percdiff 13.5395 saved region 0:8859 - 14 best edges are potentially confused break tig 5243 into up to 2 pieces: 0 9359 repeat (length 9359) 9359 10975 unique (length 1616) Creating Unitig 113791 Creating Unitig 113792 For tig 5243 repeat region 0 9359 - 16/ 0 reads repeat/unique - unitig 113791 created. For tig 5243 unique region 9359 10975 - 0/ 8 reads repeat/unique - unitig 113792 created. Annotating repeats in reads for tig 5249/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6213:11282 - closest 5' read 591651 ( +663) 5550:11281 ( -1) saved region 6213:11282 - closest 3' read 306741 ( -113) 6326:11282 ( +0) search for confused edges: tig 5249 read 597314 pos 5540-11278 IS confused by 3' edge to read 666247 - best edge read 350666 len 3687 erate 0.0342 score 3560.90 - alt edge len 2071 erate 0.0295 score 2009.91 - absdiff 1551.00 percdiff 55.6831 tig 5249 read 597314 pos 5540-11278 IS confused by 3' edge to read 666250 - best edge read 350666 len 3687 erate 0.0342 score 3560.90 - alt edge len 2069 erate 0.0339 score 1998.86 - absdiff 1562.04 percdiff 56.1910 saved region 6213:11282 - 2 best edges are potentially confused break tig 5249 into up to 3 pieces: 0 5713 unique (length 5713) 5713 11782 repeat (length 6069) 11782 15166 unique (length 3384) Creating Unitig 113793 Creating Unitig 113794 Creating Unitig 113795 For tig 5249 unique region 0 5713 - 0/ 20 reads repeat/unique - unitig 113793 created. For tig 5249 repeat region 5713 11782 - 16/ 0 reads repeat/unique - unitig 113794 created. For tig 5249 unique region 11782 15166 - 0/ 4 reads repeat/unique - unitig 113795 created. Annotating repeats in reads for tig 5250/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8866:9555 - contained in read 59171 8142- 12639 thickest edges to the repeat regions: saved region 16253:18116 - closest read 105103 ( +5737) 10516:18116 ( +0) (contained) saved region 16253:18116 - closest read 105104 ( +5697) 10556:18116 ( +0) (contained) saved region 16253:18116 - closest read 185778 ( +0) 16253:20614 ( +2498) (contained) saved region 16253:18116 - closest 5' read 185778 ( +0) 16253:20614 ( +2498) saved region 16253:18116 - closest 3' read 105103 ( +5737) 10516:18116 ( +0) search for confused edges: discard region 16253:18116 - no confusion in best edges Annotating repeats in reads for tig 5254/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5255/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9356:4309 - contained in read 99171 0- 11282 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5256/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4069:4639 - contained in read 654562 1395- 6423 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5259/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5264/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 10698:11857 - contained in read 484121 5763- 12870 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5267/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5268/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 191:3024 - contained in read 674363 0- 4556 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5269/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. discard region 232:4306 - contained in read 694048 0- 10272 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5277/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9347:13517 - closest read 682636 ( +1111) 8236:13625 ( +108) (contained) saved region 9347:13517 - closest read 465452 ( +358) 8989:13721 ( +204) (contained) saved region 9347:13517 - closest read 141736 ( +264) 9083:13619 ( +102) (contained) saved region 9347:13517 - closest 5' read 465452 ( +358) 8989:13721 ( +204) saved region 9347:13517 - closest 3' read 682636 ( +1111) 8236:13625 ( +108) search for confused edges: discard region 9347:13517 - no confusion in best edges Annotating repeats in reads for tig 5279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5285/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5286/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5289/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5290/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5291/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5294/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5296/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5303/113047. Annotated with 580 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:19542 - closest 5' read 263989 ( +0) 0:11898 ( -7644) saved region 0:19542 - closest 3' read 571045 ( -8718) 8718:19542 ( +0) search for confused edges: tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 2168 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 1453 erate 0.0455 score 1386.89 - absdiff 10812.19 percdiff 159.1670 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 77608 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 2070 erate 0.0599 score 1946.01 - absdiff 10253.08 percdiff 144.9701 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 228932 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 994 erate 0.0433 score 950.96 - absdiff 11248.12 percdiff 171.0736 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 285941 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 1199 erate 0.0543 score 1133.89 - absdiff 11065.19 percdiff 165.9823 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 288602 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 3445 erate 0.0232 score 3365.08 - absdiff 8834.01 percdiff 113.5173 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 288603 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 3479 erate 0.0247 score 3393.07 - absdiff 8806.01 percdiff 112.9544 tig 5303 read 119715 pos 1497-14182 NOT confused by 3' edge to read 364107 - best edge read 443994 len 11921 erate 0.0210 score 11670.66 - alt edge len 1732 erate 0.0260 score 1686.97 - absdiff 9983.69 percdiff 149.4830 tig 5303 read 119715 pos 1497-14182 NOT confused by 3' edge to read 493642 - best edge read 443994 len 11921 erate 0.0210 score 11670.66 - alt edge len 867 erate 0.0473 score 825.99 - absdiff 10844.67 percdiff 173.5612 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 537343 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 640 erate 0.0469 score 609.98 - absdiff 11589.10 percdiff 180.9515 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 537345 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 623 erate 0.0384 score 599.08 - absdiff 11600.01 percdiff 181.2762 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 537347 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 617 erate 0.0498 score 586.27 - absdiff 11612.81 percdiff 181.6580 tig 5303 read 119715 pos 1497-14182 NOT confused by 5' edge to read 582792 - best edge read 450453 len 12351 erate 0.0123 score 12199.08 - alt edge len 4243 erate 0.0151 score 4178.93 - absdiff 8020.15 percdiff 97.9380 tig 5303 read 119715 pos 1497-14182 NOT confused by 3' edge to read 712598 - best edge read 443994 len 11921 erate 0.0210 score 11670.66 - alt edge len 2071 erate 0.0449 score 1978.01 - absdiff 9692.65 percdiff 142.0306 tig 5303 read 450453 pos 2266-17653 NOT confused by 3' edge to read 288602 - best edge read 443994 len 15140 erate 0.0231 score 14790.27 - alt edge len 2294 erate 0.0275 score 2230.91 - absdiff 12559.35 percdiff 147.5732 tig 5303 read 450453 pos 2266-17653 NOT confused by 3' edge to read 288603 - best edge read 443994 len 15140 erate 0.0231 score 14790.27 - alt edge len 2328 erate 0.0297 score 2258.86 - absdiff 12531.41 percdiff 147.0035 tig 5303 read 450453 pos 2266-17653 NOT confused by 5' edge to read 364107 - best edge read 713076 len 12595 erate 0.0180 score 12368.29 - alt edge len 1526 erate 0.0303 score 1479.76 - absdiff 10888.53 percdiff 157.2572 tig 5303 read 450453 pos 2266-17653 NOT confused by 5' edge to read 493642 - best edge read 713076 len 12595 erate 0.0180 score 12368.29 - alt edge len 663 erate 0.0655 score 619.57 - absdiff 11748.72 percdiff 180.9184 tig 5303 read 450453 pos 2266-17653 NOT confused by 3' edge to read 582792 - best edge read 443994 len 15140 erate 0.0231 score 14790.27 - alt edge len 3092 erate 0.0188 score 3033.87 - absdiff 11756.40 percdiff 131.9155 tig 5303 read 450453 pos 2266-17653 NOT confused by 5' edge to read 712598 - best edge read 713076 len 12595 erate 0.0180 score 12368.29 - alt edge len 1863 erate 0.0485 score 1772.64 - absdiff 10595.65 percdiff 149.8578 tig 5303 read 443994 pos 2297-18114 NOT confused by 3' edge to read 288602 - best edge read 713076 len 12116 erate 0.0200 score 11873.68 - alt edge len 2811 erate 0.0334 score 2717.11 - absdiff 9156.57 percdiff 125.5116 tig 5303 read 443994 pos 2297-18114 NOT confused by 3' edge to read 288603 - best edge read 713076 len 12116 erate 0.0200 score 11873.68 - alt edge len 2845 erate 0.0330 score 2751.11 - absdiff 9122.57 percdiff 124.7548 tig 5303 read 443994 pos 2297-18114 NOT confused by 5' edge to read 364107 - best edge read 450453 len 15150 erate 0.0231 score 14800.03 - alt edge len 1433 erate 0.0379 score 1378.69 - absdiff 13421.35 percdiff 165.9135 tig 5303 read 443994 pos 2297-18114 NOT confused by 5' edge to read 493642 - best edge read 450453 len 15150 erate 0.0231 score 14800.03 - alt edge len 569 erate 0.0654 score 531.79 - absdiff 14268.25 percdiff 186.1259 tig 5303 read 443994 pos 2297-18114 NOT confused by 3' edge to read 582792 - best edge read 713076 len 12116 erate 0.0200 score 11873.68 - alt edge len 3614 erate 0.0288 score 3509.92 - absdiff 8363.76 percdiff 108.7361 tig 5303 read 443994 pos 2297-18114 NOT confused by 5' edge to read 712598 - best edge read 450453 len 15150 erate 0.0231 score 14800.03 - alt edge len 1770 erate 0.0524 score 1677.25 - absdiff 13122.78 percdiff 159.2833 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 2168 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 1728 erate 0.0483 score 1644.54 - absdiff 10745.36 percdiff 153.1285 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 77608 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 2349 erate 0.0601 score 2207.83 - absdiff 10182.07 percdiff 139.5022 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 228932 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 1274 erate 0.0410 score 1221.77 - absdiff 11168.13 percdiff 164.0965 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 285941 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 1471 erate 0.0587 score 1384.65 - absdiff 11005.24 percdiff 159.7910 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 288602 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 3727 erate 0.0252 score 3633.08 - absdiff 8756.81 percdiff 109.3032 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 288603 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 3761 erate 0.0266 score 3660.96 - absdiff 8728.94 percdiff 108.7660 tig 5303 read 713076 pos 4101-17277 NOT confused by 3' edge to read 364107 - best edge read 443994 len 12126 erate 0.0200 score 11883.48 - alt edge len 1949 erate 0.0308 score 1888.97 - absdiff 9994.51 percdiff 145.1377 tig 5303 read 713076 pos 4101-17277 NOT confused by 3' edge to read 493642 - best edge read 443994 len 12126 erate 0.0200 score 11883.48 - alt edge len 1086 erate 0.0534 score 1028.01 - absdiff 10855.47 percdiff 168.1522 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 537343 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 900 erate 0.0490 score 855.90 - absdiff 11533.99 percdiff 174.1533 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 537345 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 896 erate 0.0470 score 853.89 - absdiff 11536.01 percdiff 174.2101 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 537347 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 889 erate 0.0498 score 844.73 - absdiff 11545.17 percdiff 174.4692 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 582792 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 4526 erate 0.0172 score 4448.15 - absdiff 7941.74 percdiff 94.3309 tig 5303 read 713076 pos 4101-17277 NOT confused by 5' edge to read 712598 - best edge read 450453 len 12617 erate 0.0180 score 12389.89 - alt edge len 770 erate 0.0449 score 735.43 - absdiff 11654.47 percdiff 177.5875 discard region 0:19542 - no confusion in best edges Annotating repeats in reads for tig 5308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5313/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 23270:24666 - contained in read 124860 20404- 24666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5320/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7512:8302 - contained in read 341176 3803- 10124 discard region 9604:10563 - contained in read 126686 7698- 12652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5322/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6272:6819 - contained in read 136383 2496- 7823 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5332/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5336/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 8466:14020 - contained in read 563642 1237- 18035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5348/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5351/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5353/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 11247:12764 - contained in read 588738 8757- 14519 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5356/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 21466:22261 - contained in read 138889 15310- 25647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5361/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10807:10222 - contained in read 58754 3309- 10807 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5367/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 0:2456 - contained in read 608969 0- 8481 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5370/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 13286:13932 - contained in read 588857 10270- 16268 thickest edges to the repeat regions: saved region 9037:12861 - closest read 179622 ( +0) 9037:13971 ( +1110) (contained) saved region 9037:12861 - closest 5' read 179622 ( +0) 9037:13971 ( +1110) saved region 9037:12861 - closest 3' read 179622 ( +0) 9037:13971 ( +1110) search for confused edges: tig 5370 read 95452 pos 1124-11251 IS confused by 5' edge to read 160641 - best edge read 179622 len 2182 erate 0.0284 score 2120.03 - alt edge len 1024 erate 0.0429 score 980.07 - absdiff 1139.96 percdiff 73.5434 tig 5370 read 95452 pos 1124-11251 IS confused by 5' edge to read 400796 - best edge read 179622 len 2182 erate 0.0284 score 2120.03 - alt edge len 788 erate 0.0336 score 761.52 - absdiff 1358.51 percdiff 94.2899 saved region 9037:12861 - 2 best edges are potentially confused break tig 5370 into up to 3 pieces: 0 8537 unique (length 8537) 8537 13361 repeat (length 4824) 13361 18859 unique (length 5498) Creating Unitig 113796 Creating Unitig 113797 Creating Unitig 113798 For tig 5370 unique region 0 8537 - 0/ 19 reads repeat/unique - unitig 113796 created. For tig 5370 repeat region 8537 13361 - 21/ 0 reads repeat/unique - unitig 113798 created. For tig 5370 unique region 13361 18859 - 0/ 15 reads repeat/unique - unitig 113797 created. Annotating repeats in reads for tig 5374/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 487:4447 - contained in read 492361 0- 7917 discard region 8273:10311 - contained in read 210395 4352- 14123 thickest edges to the repeat regions: saved region 10695:14481 - closest read 144507 ( +1644) 9051:14919 ( +438) (contained) saved region 10695:14481 - closest read 144506 ( +1619) 9076:14940 ( +459) (contained) saved region 10695:14481 - closest read 381141 ( +1544) 9151:14818 ( +337) (contained) saved region 10695:14481 - closest read 144509 ( +1457) 9238:14887 ( +406) (contained) saved region 10695:14481 - closest read 186165 ( +1258) 9437:14975 ( +494) (contained) saved region 10695:14481 - closest read 541835 ( +367) 10328:15477 ( +996) (contained) saved region 10695:14481 - closest 5' read 541835 ( +367) 10328:15477 ( +996) saved region 10695:14481 - closest 3' read 144507 ( +1644) 9051:14919 ( +438) search for confused edges: discard region 10695:14481 - no confusion in best edges Annotating repeats in reads for tig 5376/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5382/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5385/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5391/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5708:4020 - contained in read 148653 841- 6672 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5393/113047. Annotated with 91 overlaps. Scan reads to discard spanned repeats. discard region 12810:13329 - contained in read 99661 7996- 15195 thickest edges to the repeat regions: saved region 3590:10722 - closest 5' read 397948 ( +0) 3590:10478 ( -244) saved region 3590:10722 - closest 3' read 417638 ( -3735) 7325:10722 ( +0) search for confused edges: tig 5393 read 145079 pos 0-5644 IS confused by 5' edge to read 266339 - best edge read 397948 len 1979 erate 0.0285 score 1922.60 - alt edge len 1749 erate 0.0276 score 1700.73 - absdiff 221.87 percdiff 12.2468 tig 5393 read 397949 pos 3608-10505 NOT confused by 5' edge to read 57687 - best edge read 397948 len 6796 erate 0.0112 score 6719.88 - alt edge len 2263 erate 0.0694 score 2105.95 - absdiff 4613.94 percdiff 104.5553 tig 5393 read 397949 pos 3608-10505 NOT confused by 5' edge to read 612179 - best edge read 397948 len 6796 erate 0.0112 score 6719.88 - alt edge len 1238 erate 0.0340 score 1195.91 - absdiff 5523.98 percdiff 139.5685 tig 5393 read 99661 pos 7996-15195 IS confused by 3' edge to read 108842 - best edge read 397949 len 2385 erate 0.0553 score 2253.11 - alt edge len 2187 erate 0.0416 score 2096.02 - absdiff 157.09 percdiff 7.2239 saved region 3590:10722 - 2 best edges are potentially confused break tig 5393 into up to 3 pieces: 0 3090 unique (length 3090) 3090 11222 repeat (length 8132) 11222 16847 unique (length 5625) Creating Unitig 113799 Creating Unitig 113800 Creating Unitig 113801 For tig 5393 unique region 0 3090 - 0/ 1 reads repeat/unique - unitig 113799 created. For tig 5393 repeat region 3090 11222 - 12/ 0 reads repeat/unique - unitig 113800 created. For tig 5393 unique region 11222 16847 - 0/ 7 reads repeat/unique - unitig 113801 created. Annotating repeats in reads for tig 5394/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6401:12538 - closest 5' read 275137 ( +1086) 5315:12405 ( -133) saved region 6401:12538 - closest 3' read 674625 ( -4007) 10408:17008 ( +4470) search for confused edges: tig 5394 read 674625 pos 10408-17008 IS confused by 3' edge to read 528531 - best edge read 275137 len 1989 erate 0.0383 score 1912.82 - alt edge len 1015 erate 0.0367 score 977.75 - absdiff 935.07 percdiff 64.6981 saved region 6401:12538 - 1 best edges are potentially confused break tig 5394 into up to 3 pieces: 0 5901 unique (length 5901) 5901 13038 repeat (length 7137) 13038 17172 unique (length 4134) Creating Unitig 113802 Creating Unitig 113803 Creating Unitig 113804 For tig 5394 unique region 0 5901 - 0/ 7 reads repeat/unique - unitig 113802 created. For tig 5394 repeat region 5901 13038 - 4/ 0 reads repeat/unique - unitig 113803 created. For tig 5394 unique region 13038 17172 - 0/ 8 reads repeat/unique - unitig 113804 created. Annotating repeats in reads for tig 5398/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5402/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5408/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 11249:12678 - contained in read 575354 4932- 14232 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5412/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2766:4283 - closest 5' read 582262 ( +2766) 0:4255 ( -28) saved region 2766:4283 - closest 3' read 460586 ( -19) 2785:8272 ( +3989) search for confused edges: tig 5412 read 460586 pos 2785-8272 IS confused by 3' edge to read 155906 - best edge read 582262 len 1465 erate 0.0591 score 1378.42 - alt edge len 1119 erate 0.0509 score 1062.04 - absdiff 316.38 percdiff 25.9275 saved region 2766:4283 - 1 best edges are potentially confused break tig 5412 into up to 3 pieces: 0 2266 unique (length 2266) 2266 4783 repeat (length 2517) 4783 19294 unique (length 14511) Creating Unitig 113805 Creating Unitig 113806 For tig 5412 unique region 0 2266 - 0/ 4 reads repeat/unique - unitig 113805 created. For tig 5412 repeat region 2266 4783 - 0/ 0 repeat/unique reads - no new unitig created. For tig 5412 unique region 4783 19294 - 0/ 21 reads repeat/unique - unitig 113806 created. Annotating repeats in reads for tig 5413/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8036:8627 - contained in read 98345 6235- 11581 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5414/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5417/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7443:8253 - closest read 646374 ( +1787) 5656:8253 ( +0) (contained) saved region 7443:8253 - closest read 483862 ( +118) 7325:11238 ( +2985) (contained) saved region 7443:8253 - closest read 643271 ( +88) 7355:13549 ( +5296) (contained) saved region 7443:8253 - closest 5' read 643271 ( +88) 7355:13549 ( +5296) saved region 7443:8253 - closest 3' read 646374 ( +1787) 5656:8253 ( +0) saved region 12945:15534 - closest read 62537 ( +0) 12945:18750 ( +3216) (contained) saved region 12945:15534 - closest 5' read 62537 ( +0) 12945:18750 ( +3216) saved region 12945:15534 - closest 3' read 62537 ( +0) 12945:18750 ( +3216) search for confused edges: tig 5417 read 147405 pos 9592-14778 IS confused by 5' edge to read 43773 - best edge read 62537 len 1820 erate 0.0492 score 1730.46 - alt edge len 1777 erate 0.0490 score 1689.93 - absdiff 40.53 percdiff 2.3699 tig 5417 read 147405 pos 9592-14778 IS confused by 5' edge to read 65243 - best edge read 62537 len 1820 erate 0.0492 score 1730.46 - alt edge len 1363 erate 0.0384 score 1310.66 - absdiff 419.80 percdiff 27.6080 tig 5417 read 147405 pos 9592-14778 IS confused by 5' edge to read 371169 - best edge read 62537 len 1820 erate 0.0492 score 1730.46 - alt edge len 1626 erate 0.0481 score 1547.79 - absdiff 182.67 percdiff 11.1442 tig 5417 read 147405 pos 9592-14778 IS confused by 5' edge to read 371170 - best edge read 62537 len 1820 erate 0.0492 score 1730.46 - alt edge len 1590 erate 0.0540 score 1504.14 - absdiff 226.32 percdiff 13.9935 tig 5417 read 147405 pos 9592-14778 IS confused by 5' edge to read 529045 - best edge read 62537 len 1820 erate 0.0492 score 1730.46 - alt edge len 1777 erate 0.0588 score 1672.51 - absdiff 57.94 percdiff 3.4055 tig 5417 read 147405 pos 9592-14778 IS confused by 5' edge to read 659302 - best edge read 62537 len 1820 erate 0.0492 score 1730.46 - alt edge len 1777 erate 0.0454 score 1696.32 - absdiff 34.13 percdiff 1.9921 discard region 7443:8253 - no confusion in best edges saved region 12945:15534 - 6 best edges are potentially confused break tig 5417 into up to 3 pieces: 0 12445 unique (length 12445) 12445 16034 repeat (length 3589) 16034 18750 unique (length 2716) Creating Unitig 113807 Creating Unitig 113808 Creating Unitig 113809 For tig 5417 unique region 0 12445 - 0/ 20 reads repeat/unique - unitig 113807 created. For tig 5417 repeat region 12445 16034 - 9/ 0 reads repeat/unique - unitig 113809 created. For tig 5417 unique region 16034 18750 - 0/ 3 reads repeat/unique - unitig 113808 created. Annotating repeats in reads for tig 5419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5422/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10902:10343 - contained in read 626448 112- 12594 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5424/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2405:4732 - contained in read 500841 0- 8782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5432/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5015:8563 - contained in read 169615 2978- 9395 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5438/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5451/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:2148 - contained in read 657039 0- 2819 discard region 2119:3117 - contained in read 159748 44- 3860 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5456/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5458:12008 - closest 5' read 551354 ( +1649) 3809:9763 ( -2245) saved region 5458:12008 - closest 3' read 685346 ( -3020) 8478:17719 ( +5711) search for confused edges: discard region 5458:12008 - no confusion in best edges Annotating repeats in reads for tig 5459/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9731:10917 - contained in read 179378 5050- 11361 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5461/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8811:9491 - contained in read 406306 4349- 10721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5462/113047. Annotated with 65 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1649:7524 - closest read 569559 ( +1227) 422:7983 ( +459) (contained) saved region 1649:7524 - closest 5' read 569559 ( +1227) 422:7983 ( +459) saved region 1649:7524 - closest 3' read 569559 ( +1227) 422:7983 ( +459) search for confused edges: discard region 1649:7524 - no confusion in best edges Annotating repeats in reads for tig 5463/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 15210:16468 - contained in read 261612 11635- 17418 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5464/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7096:8155 - contained in read 370773 4892- 11958 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5465/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5467/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 14233:17601 - contained in read 522464 8381- 20657 thickest edges to the repeat regions: saved region 8796:13892 - closest read 522464 ( +415) 8381:20657 ( +6765) (contained) saved region 8796:13892 - closest read 314521 ( +414) 8382:15404 ( +1512) (contained) saved region 8796:13892 - closest read 517848 ( +369) 8427:14207 ( +315) (contained) saved region 8796:13892 - closest read 634218 ( +57) 8739:15699 ( +1807) (contained) saved region 8796:13892 - closest 5' read 522464 ( +415) 8381:20657 ( +6765) saved region 8796:13892 - closest 3' read 522464 ( +415) 8381:20657 ( +6765) search for confused edges: tig 5467 read 13377 pos 4954-10731 IS confused by 3' edge to read 656238 - best edge read 522464 len 797 erate 0.0331 score 770.62 - alt edge len 785 erate 0.0386 score 754.70 - absdiff 15.92 percdiff 2.0875 saved region 8796:13892 - 1 best edges are potentially confused break tig 5467 into up to 3 pieces: 0 8296 unique (length 8296) 8296 14392 repeat (length 6096) 14392 26230 unique (length 11838) Creating Unitig 113810 Creating Unitig 113811 Creating Unitig 113812 For tig 5467 unique region 0 8296 - 0/ 9 reads repeat/unique - unitig 113810 created. For tig 5467 repeat region 8296 14392 - 14/ 0 reads repeat/unique - unitig 113812 created. For tig 5467 unique region 14392 26230 - 0/ 26 reads repeat/unique - unitig 113811 created. Annotating repeats in reads for tig 5468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5470/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5472/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5473/113047. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 3322:6473 - contained in read 608779 78- 7044 thickest edges to the repeat regions: saved region 10499:16709 - closest 5' read 472711 ( +500) 9999:16674 ( -35) saved region 10499:16709 - closest 3' read 195662 ( -4) 10503:17335 ( +626) search for confused edges: tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 169175 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 3196 erate 0.0313 score 3095.97 - absdiff 2619.89 percdiff 59.4630 tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 301486 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 1515 erate 0.0649 score 1416.68 - absdiff 4299.18 percdiff 120.5512 tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 357269 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 2777 erate 0.0316 score 2689.25 - absdiff 3026.61 percdiff 72.0183 tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 357271 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 2764 erate 0.0381 score 2658.69 - absdiff 3057.16 percdiff 73.0108 tig 5473 read 184947 pos 6581-16521 IS confused by 3' edge to read 428770 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 4531 erate 0.0528 score 4291.76 - absdiff 1424.09 percdiff 28.4601 tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 451296 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 2776 erate 0.0406 score 2663.29 - absdiff 3052.56 percdiff 72.8608 tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 619027 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 1793 erate 0.0402 score 1720.92 - absdiff 3994.93 percdiff 107.4372 tig 5473 read 184947 pos 6581-16521 NOT confused by 3' edge to read 645160 - best edge read 195662 len 5933 erate 0.0366 score 5715.85 - alt edge len 1712 erate 0.0474 score 1630.85 - absdiff 4085.00 percdiff 111.2064 saved region 10499:16709 - 1 best edges are potentially confused break tig 5473 into up to 3 pieces: 0 9999 unique (length 9999) 9999 17209 repeat (length 7210) 17209 17434 unique (length 225) Creating Unitig 113813 Creating Unitig 113814 Creating Unitig 113815 For tig 5473 unique region 0 9999 - 0/ 14 reads repeat/unique - unitig 113813 created. For tig 5473 repeat region 9999 17209 - 29/ 0 reads repeat/unique - unitig 113814 created. For tig 5473 unique region 17209 17434 - 0/ 2 reads repeat/unique - unitig 113815 created. Annotating repeats in reads for tig 5474/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 14738:14216 - contained in read 185176 9106- 15293 thickest edges to the repeat regions: saved region 4010:7714 - closest read 450674 ( +4010) 0:7714 ( +0) (contained) saved region 4010:7714 - closest 5' read 450674 ( +4010) 0:7714 ( +0) saved region 4010:7714 - closest 3' read 450674 ( +4010) 0:7714 ( +0) search for confused edges: discard region 4010:7714 - no confusion in best edges Annotating repeats in reads for tig 5477/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 14004:17812 - contained in read 156515 8982- 17812 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5478/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5482/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5488/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5489/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5495/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 11984:8797 - contained in read 413060 3926- 11997 discard region 11997:10461 - contained in read 413060 3926- 11997 discard region 11997:10491 - contained in read 413060 3926- 11997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5501/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:517 - contained in read 306672 0- 4512 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5505/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5510/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 2475:5755 - contained in read 111124 1532- 6785 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5521/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 10050:13209 - contained in read 388909 6412- 14126 discard region 19505:22535 - contained in read 63969 15051- 24555 thickest edges to the repeat regions: saved region 13384:15251 - closest read 629129 ( +222) 13162:18842 ( +3591) (contained) saved region 13384:15251 - closest read 490333 ( +205) 13179:19931 ( +4680) (contained) saved region 13384:15251 - closest read 623457 ( +203) 13181:20688 ( +5437) (contained) saved region 13384:15251 - closest read 394368 ( +187) 13197:15251 ( +0) (contained) saved region 13384:15251 - closest read 492502 ( +176) 13208:17338 ( +2087) (contained) saved region 13384:15251 - closest 5' read 623457 ( +203) 13181:20688 ( +5437) saved region 13384:15251 - closest 3' read 629129 ( +222) 13162:18842 ( +3591) search for confused edges: discard region 13384:15251 - no confusion in best edges Annotating repeats in reads for tig 5522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5534/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5546/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 15091:16606 - contained in read 317335 14406- 20464 thickest edges to the repeat regions: saved region 6395:8301 - closest 5' read 622810 ( +2770) 3625:8248 ( -53) saved region 6395:8301 - closest 3' read 233289 ( -33) 6428:9022 ( +721) search for confused edges: tig 5546 read 233289 pos 6428-9022 IS confused by 3' edge to read 646555 - best edge read 622810 len 1771 erate 0.0628 score 1659.78 - alt edge len 1163 erate 0.0638 score 1088.80 - absdiff 570.98 percdiff 41.5473 saved region 6395:8301 - 1 best edges are potentially confused break tig 5546 into up to 3 pieces: 0 5895 unique (length 5895) 5895 8801 repeat (length 2906) 8801 21391 unique (length 12590) Creating Unitig 113816 Creating Unitig 113817 Creating Unitig 113818 For tig 5546 unique region 0 5895 - 0/ 4 reads repeat/unique - unitig 113816 created. For tig 5546 repeat region 5895 8801 - 8/ 0 reads repeat/unique - unitig 113817 created. For tig 5546 unique region 8801 21391 - 0/ 13 reads repeat/unique - unitig 113818 created. Annotating repeats in reads for tig 5551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5555/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5560/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5363:7419 - contained in read 450555 4304- 12990 discard region 16698:17732 - contained in read 691179 15535- 19475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5564/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 10367:9670 - contained in read 513608 3486- 14062 discard region 10679:11301 - contained in read 513608 3486- 14062 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5570/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5572/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1785:481 - contained in read 165733 0- 7666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5573/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4857:6378 - closest read 122482 ( +4857) 0:6378 ( +0) (contained) saved region 4857:6378 - closest 5' read 122482 ( +4857) 0:6378 ( +0) saved region 4857:6378 - closest 3' read 122482 ( +4857) 0:6378 ( +0) search for confused edges: discard region 4857:6378 - no confusion in best edges Annotating repeats in reads for tig 5574/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9559:10367 - contained in read 323094 4681- 10922 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5580/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5592/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5627:12254 - closest 5' read 615029 ( +1383) 4244:10701 ( -1553) saved region 5627:12254 - closest 3' read 428526 ( -1537) 7164:13328 ( +1074) search for confused edges: discard region 5627:12254 - no confusion in best edges Annotating repeats in reads for tig 5594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5599/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6443:7452 - contained in read 689464 54- 8361 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5602/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5607/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 11307:12821 - contained in read 718899 10445- 13351 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5610/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5613/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 4356:7054 - contained in read 268043 1281- 7859 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5615/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 907:1953 - contained in read 229244 0- 2671 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5624/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16630:19934 - closest read 665122 ( +6147) 10483:19934 ( +0) (contained) saved region 16630:19934 - closest 5' read 665122 ( +6147) 10483:19934 ( +0) saved region 16630:19934 - closest 3' read 665122 ( +6147) 10483:19934 ( +0) search for confused edges: tig 5624 read 698484 pos 4991-19922 IS confused by 3' edge to read 537914 - best edge read 272541 len 3252 erate 0.0590 score 3060.13 - alt edge len 3257 erate 0.0230 score 3182.09 - absdiff 121.96 percdiff 3.9075 saved region 16630:19934 - 1 best edges are potentially confused break tig 5624 into up to 3 pieces: 0 16130 unique (length 16130) 16130 20434 repeat (length 4304) 20434 22191 unique (length 1757) Creating Unitig 113819 Creating Unitig 113820 Creating Unitig 113821 For tig 5624 unique region 0 16130 - 0/ 24 reads repeat/unique - unitig 113819 created. For tig 5624 repeat region 16130 20434 - 2/ 0 reads repeat/unique - unitig 113820 created. For tig 5624 unique region 20434 22191 - 0/ 4 reads repeat/unique - unitig 113821 created. Annotating repeats in reads for tig 5625/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2082:616 - contained in read 470261 0- 6409 discard region 2088:709 - contained in read 470261 0- 6409 discard region 3337:5240 - contained in read 470261 0- 6409 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5630/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 10171:8413 - contained in read 235218 0- 10721 discard region 11081:12008 - contained in read 577530 5779- 15833 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5641/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 0:2218 - contained in read 507667 0- 5874 discard region 4258:5874 - contained in read 651592 546- 6973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5647/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 5049:4067 - contained in read 242474 0- 5691 discard region 6368:8886 - contained in read 11985 2284- 9768 discard region 9227:10480 - contained in read 372910 4638- 10480 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5650/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4309:14912 - closest 5' read 138963 ( +0) 4309:14908 ( -4) saved region 4309:14912 - closest 3' read 506421 ( -1673) 5982:14912 ( +0) search for confused edges: tig 5650 read 242679 pos 25-8495 NOT confused by 3' edge to read 47945 - best edge read 138963 len 4070 erate 0.0725 score 3774.93 - alt edge len 600 erate 0.0333 score 580.02 - absdiff 3194.91 percdiff 146.7254 tig 5650 read 242679 pos 25-8495 NOT confused by 3' edge to read 538462 - best edge read 138963 len 4070 erate 0.0725 score 3774.93 - alt edge len 1455 erate 0.0317 score 1408.88 - absdiff 2366.05 percdiff 91.2862 tig 5650 read 242679 pos 25-8495 NOT confused by 3' edge to read 538463 - best edge read 138963 len 4070 erate 0.0725 score 3774.93 - alt edge len 1456 erate 0.0275 score 1415.96 - absdiff 2358.97 percdiff 90.8887 discard region 4309:14912 - no confusion in best edges Annotating repeats in reads for tig 5666/113047. Annotated with 87 overlaps. Scan reads to discard spanned repeats. discard region 9244:10270 - contained in read 246201 3708- 10713 thickest edges to the repeat regions: saved region 2592:5352 - closest read 710428 ( +2592) 0:5659 ( +307) (contained) saved region 2592:5352 - closest read 292189 ( +0) 2592:5352 ( +0) (contained) saved region 2592:5352 - closest 5' read 710428 ( +2592) 0:5659 ( +307) saved region 2592:5352 - closest 3' read 710428 ( +2592) 0:5659 ( +307) search for confused edges: discard region 2592:5352 - no confusion in best edges Annotating repeats in reads for tig 5667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5674/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7408:8162 - contained in read 606400 5285- 13699 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5676/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 21879:18805 - contained in read 248417 11719- 22938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5678/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 3233:7116 - contained in read 552991 2450- 7116 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5679/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 14676:16250 - contained in read 323837 9065- 17641 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5688/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:2357 - contained in read 505829 0- 8867 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5695/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:921 - contained in read 126161 0- 7993 discard region 15111:18469 - contained in read 485003 3590- 24835 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5696/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2225:8759 - closest 5' read 350069 ( +86) 2139:8638 ( -121) saved region 2225:8759 - closest 3' read 707831 ( -12) 2237:13185 ( +4426) search for confused edges: discard region 2225:8759 - no confusion in best edges Annotating repeats in reads for tig 5698/113047. Annotated with 431 overlaps. Scan reads to discard spanned repeats. discard region 3867:4452 - contained in read 246282 705- 15028 discard region 4827:13921 - contained in read 246282 705- 15028 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5699/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2016:488 - contained in read 256727 0- 7297 discard region 7340:9478 - contained in read 507910 4334- 9478 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5700/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5701/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5834:15306 - closest 5' read 215804 ( +1019) 4815:9504 ( -5802) saved region 5834:15306 - closest 3' read 414569 ( -4756) 10590:15363 ( +57) search for confused edges: tig 5701 read 34054 pos 7772-13527 IS confused by 5' edge to read 340695 - best edge read 34055 len 5744 erate 0.0131 score 5668.75 - alt edge len 5677 erate 0.0152 score 5590.71 - absdiff 78.04 percdiff 1.3863 tig 5701 read 34054 pos 7772-13527 IS confused by 5' edge to read 340697 - best edge read 34055 len 5744 erate 0.0131 score 5668.75 - alt edge len 5674 erate 0.0104 score 5614.99 - absdiff 53.76 percdiff 0.9529 tig 5701 read 414569 pos 10590-15363 IS confused by 5' edge to read 340695 - best edge read 34054 len 2886 erate 0.0652 score 2697.83 - alt edge len 2836 erate 0.0562 score 2676.62 - absdiff 21.22 percdiff 0.7895 tig 5701 read 414569 pos 10590-15363 IS confused by 5' edge to read 340697 - best edge read 34054 len 2886 erate 0.0652 score 2697.83 - alt edge len 2834 erate 0.0532 score 2683.23 - absdiff 14.60 percdiff 0.5427 saved region 5834:15306 - 4 best edges are potentially confused break tig 5701 into up to 2 pieces: 0 5334 unique (length 5334) 5334 15363 repeat (length 10029) Creating Unitig 113822 Creating Unitig 113823 For tig 5701 unique region 0 5334 - 0/ 12 reads repeat/unique - unitig 113822 created. For tig 5701 repeat region 5334 15363 - 16/ 0 reads repeat/unique - unitig 113823 created. Annotating repeats in reads for tig 5704/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2662:873 - contained in read 569728 0- 6828 discard region 2704:5199 - contained in read 569728 0- 6828 thickest edges to the repeat regions: saved region 6528:8436 - closest read 569726 ( +5075) 1453:8436 ( +0) (contained) saved region 6528:8436 - closest 5' read 569726 ( +5075) 1453:8436 ( +0) saved region 6528:8436 - closest 3' read 569726 ( +5075) 1453:8436 ( +0) search for confused edges: tig 5704 read 498091 pos 6572-11891 IS confused by 5' edge to read 563660 - best edge read 569725 len 1645 erate 0.0630 score 1541.37 - alt edge len 1320 erate 0.0539 score 1248.85 - absdiff 292.51 percdiff 20.9670 tig 5704 read 498091 pos 6572-11891 IS confused by 5' edge to read 563661 - best edge read 569725 len 1645 erate 0.0630 score 1541.37 - alt edge len 1330 erate 0.0569 score 1254.32 - absdiff 287.04 percdiff 20.5346 saved region 6528:8436 - 2 best edges are potentially confused break tig 5704 into up to 3 pieces: 0 6028 unique (length 6028) 6028 8936 repeat (length 2908) 8936 12102 unique (length 3166) Creating Unitig 113824 Creating Unitig 113825 For tig 5704 unique region 0 6028 - 0/ 16 reads repeat/unique - unitig 113824 created. For tig 5704 repeat region 6028 8936 - 0/ 0 repeat/unique reads - no new unitig created. For tig 5704 unique region 8936 12102 - 0/ 6 reads repeat/unique - unitig 113825 created. Annotating repeats in reads for tig 5705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5710/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2325:4567 - contained in read 353289 0- 5691 discard region 5691:5165 - contained in read 353289 0- 5691 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5712/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 15045:16089 - contained in read 700571 9745- 17673 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5715/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5718/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 18524:19565 - contained in read 20096 11158- 24062 discard region 21415:24440 - contained in read 581691 18776- 24456 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5723/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5724/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5729/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5730/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 14451:15901 - contained in read 684740 10087- 15930 thickest edges to the repeat regions: saved region 0:12114 - closest 5' read 721355 ( +0) 0:8152 ( -3962) saved region 0:12114 - closest 3' read 338575 ( -7007) 7007:12114 ( +0) search for confused edges: tig 5730 read 484829 pos 2773-8477 IS confused by 3' edge to read 552237 - best edge read 721355 len 5380 erate 0.0183 score 5281.55 - alt edge len 5290 erate 0.0165 score 5202.72 - absdiff 78.83 percdiff 1.5038 tig 5730 read 266836 pos 7229-15929 IS confused by 5' edge to read 122676 - best edge read 484829 len 1237 erate 0.0446 score 1181.83 - alt edge len 1202 erate 0.0683 score 1119.90 - absdiff 61.93 percdiff 5.3808 tig 5730 read 266836 pos 7229-15929 IS confused by 5' edge to read 122677 - best edge read 484829 len 1237 erate 0.0446 score 1181.83 - alt edge len 1204 erate 0.0665 score 1123.93 - absdiff 57.90 percdiff 5.0218 tig 5730 read 266836 pos 7229-15929 IS confused by 5' edge to read 552237 - best edge read 484829 len 1237 erate 0.0446 score 1181.83 - alt edge len 826 erate 0.0509 score 783.96 - absdiff 397.87 percdiff 40.4798 saved region 0:12114 - 4 best edges are potentially confused break tig 5730 into up to 2 pieces: 0 12614 repeat (length 12614) 12614 15930 unique (length 3316) Creating Unitig 113826 Creating Unitig 113827 For tig 5730 repeat region 0 12614 - 10/ 0 reads repeat/unique - unitig 113826 created. For tig 5730 unique region 12614 15930 - 0/ 4 reads repeat/unique - unitig 113827 created. Annotating repeats in reads for tig 5738/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5756/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 7516:8659 - contained in read 331993 3276- 9257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5758/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4417:9612 - closest read 46376 ( +154) 4263:9612 ( +0) (contained) saved region 4417:9612 - closest 5' read 46376 ( +154) 4263:9612 ( +0) saved region 4417:9612 - closest 3' read 46376 ( +154) 4263:9612 ( +0) search for confused edges: discard region 4417:9612 - no confusion in best edges Annotating repeats in reads for tig 5760/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2904:5367 - closest read 395599 ( +2904) 0:5367 ( +0) (contained) saved region 2904:5367 - closest read 478907 ( +52) 2852:8967 ( +3600) (contained) saved region 2904:5367 - closest read 478906 ( +49) 2855:8999 ( +3632) (contained) saved region 2904:5367 - closest read 478908 ( +47) 2857:8377 ( +3010) (contained) saved region 2904:5367 - closest read 478904 ( +42) 2862:8941 ( +3574) (contained) saved region 2904:5367 - closest read 478905 ( +36) 2868:9011 ( +3644) (contained) saved region 2904:5367 - closest 5' read 478905 ( +36) 2868:9011 ( +3644) saved region 2904:5367 - closest 3' read 395599 ( +2904) 0:5367 ( +0) search for confused edges: discard region 2904:5367 - no confusion in best edges Annotating repeats in reads for tig 5766/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5768/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5775/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1938:5544 - contained in read 283622 0- 6266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5776/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5782/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6941:12146 - closest read 387786 ( +410) 6531:12983 ( +837) (contained) saved region 6941:12146 - closest 5' read 387786 ( +410) 6531:12983 ( +837) saved region 6941:12146 - closest 3' read 387786 ( +410) 6531:12983 ( +837) search for confused edges: discard region 6941:12146 - no confusion in best edges Annotating repeats in reads for tig 5788/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 0:4678 - contained in read 604652 0- 11963 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5801/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 12673:15875 - contained in read 291470 8889- 17573 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5803/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5804/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5823/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5009:4279 - contained in read 394116 0- 8562 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5825/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5829/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 5670:8972 - contained in read 489232 4223- 12304 thickest edges to the repeat regions: saved region 10794:16930 - closest 5' read 213972 ( +0) 10794:16764 ( -166) saved region 10794:16930 - closest 3' read 224663 ( -1676) 12470:17320 ( +390) search for confused edges: tig 5829 read 224663 pos 12470-17320 NOT confused by 5' edge to read 489232 - best edge read 213973 len 4327 erate 0.0185 score 4246.95 - alt edge len 1352 erate 0.0141 score 1332.94 - absdiff 2914.01 percdiff 104.4470 tig 5829 read 224663 pos 12470-17320 NOT confused by 5' edge to read 601191 - best edge read 213973 len 4327 erate 0.0185 score 4246.95 - alt edge len 1612 erate 0.0155 score 1587.01 - absdiff 2659.94 percdiff 91.1880 discard region 10794:16930 - no confusion in best edges Annotating repeats in reads for tig 5830/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5727:7563 - contained in read 80892 2778- 7852 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5831/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5833/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 16613:17789 - contained in read 497732 7366- 18360 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5835/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4452:4990 - contained in read 306506 0- 5667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5837/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2601 - closest 5' read 274979 ( +0) 0:2582 ( -19) saved region 0:2601 - closest 3' read 659302 ( -6) 6:5188 ( +2587) search for confused edges: discard region 0:2601 - no confusion in best edges Annotating repeats in reads for tig 5838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5871/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5872/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5874/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5878/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 11612:14680 - contained in read 321679 10464- 16916 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5879/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7857:9363 - closest read 316532 ( +4059) 3798:9840 ( +477) (contained) saved region 7857:9363 - closest read 316536 ( +4052) 3805:9830 ( +467) (contained) saved region 7857:9363 - closest read 316534 ( +4051) 3806:9817 ( +454) (contained) saved region 7857:9363 - closest read 316533 ( +4049) 3808:9842 ( +479) (contained) saved region 7857:9363 - closest read 316535 ( +4043) 3814:9841 ( +478) (contained) saved region 7857:9363 - closest read 316537 ( +1442) 6415:9840 ( +477) (contained) saved region 7857:9363 - closest read 8952 ( +0) 7857:14796 ( +5433) (contained) saved region 7857:9363 - closest 5' read 8952 ( +0) 7857:14796 ( +5433) saved region 7857:9363 - closest 3' read 316532 ( +4059) 3798:9840 ( +477) search for confused edges: discard region 7857:9363 - no confusion in best edges Annotating repeats in reads for tig 5880/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5882/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8111:7352 - contained in read 116297 289- 8790 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5884/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5891/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5897/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5898/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5899/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5905/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5907/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5913/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9271:9916 - contained in read 334019 0- 10762 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5926/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4279:5462 - contained in read 11964 348- 13096 discard region 20665:22515 - contained in read 642029 11807- 27134 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5930/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5932/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5933/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5945/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2436:10166 - closest read 17332 ( +1234) 1202:10166 ( +0) (contained) saved region 2436:10166 - closest 5' read 17332 ( +1234) 1202:10166 ( +0) saved region 2436:10166 - closest 3' read 17332 ( +1234) 1202:10166 ( +0) search for confused edges: discard region 2436:10166 - no confusion in best edges Annotating repeats in reads for tig 5946/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 9092:12583 - contained in read 40395 2759- 14298 thickest edges to the repeat regions: saved region 588:5639 - closest read 346332 ( +588) 0:5639 ( +0) (contained) saved region 588:5639 - closest read 346331 ( +141) 447:5734 ( +95) (contained) saved region 588:5639 - closest 5' read 346331 ( +141) 447:5734 ( +95) saved region 588:5639 - closest 3' read 346332 ( +588) 0:5639 ( +0) search for confused edges: discard region 588:5639 - no confusion in best edges Annotating repeats in reads for tig 5947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5949/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 21890:23695 - contained in read 199275 16090- 28466 thickest edges to the repeat regions: saved region 13774:14970 - closest 5' read 195129 ( +0) 13774:14937 ( -33) saved region 13774:14970 - closest 3' read 390620 ( -22) 13796:21129 ( +6159) search for confused edges: discard region 13774:14970 - no confusion in best edges Annotating repeats in reads for tig 5957/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 3725:6415 - contained in read 351265 0- 7112 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5961/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 0:2696 - contained in read 586571 0- 7508 discard region 7548:6998 - contained in read 586571 0- 7508 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5962/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5967/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5209:6751 - contained in read 442201 0- 12256 discard region 7803:10454 - contained in read 442201 0- 12256 discard region 12639:13372 - contained in read 520453 5985- 14763 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5968/113047. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 9269:9877 - contained in read 635686 3844- 11069 thickest edges to the repeat regions: saved region 1906:8936 - closest read 504284 ( +589) 1317:9138 ( +202) (contained) saved region 1906:8936 - closest 5' read 504284 ( +589) 1317:9138 ( +202) saved region 1906:8936 - closest 3' read 504284 ( +589) 1317:9138 ( +202) search for confused edges: discard region 1906:8936 - no confusion in best edges Annotating repeats in reads for tig 5970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5971/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21917:25371 - closest 5' read 416116 ( +8000) 13917:24805 ( -566) saved region 21917:25371 - closest 3' read 357874 ( -1206) 23123:28332 ( +2961) search for confused edges: tig 5971 read 416116 pos 13917-24805 IS confused by 3' edge to read 165487 - best edge read 357874 len 1701 erate 0.0545 score 1608.30 - alt edge len 1221 erate 0.0469 score 1163.74 - absdiff 444.56 percdiff 32.0747 tig 5971 read 357874 pos 23123-28332 IS confused by 5' edge to read 3211 - best edge read 416116 len 1657 erate 0.0545 score 1566.69 - alt edge len 1216 erate 0.0421 score 1164.81 - absdiff 401.89 percdiff 29.4261 tig 5971 read 357874 pos 23123-28332 IS confused by 5' edge to read 118044 - best edge read 416116 len 1657 erate 0.0545 score 1566.69 - alt edge len 948 erate 0.0614 score 889.79 - absdiff 676.90 percdiff 55.1113 tig 5971 read 357874 pos 23123-28332 IS confused by 5' edge to read 132921 - best edge read 416116 len 1657 erate 0.0545 score 1566.69 - alt edge len 1159 erate 0.0442 score 1107.77 - absdiff 458.92 percdiff 34.3187 tig 5971 read 357874 pos 23123-28332 IS confused by 5' edge to read 165487 - best edge read 416116 len 1657 erate 0.0545 score 1566.69 - alt edge len 879 erate 0.0514 score 833.82 - absdiff 732.87 percdiff 61.0598 saved region 21917:25371 - 5 best edges are potentially confused break tig 5971 into up to 3 pieces: 0 21417 unique (length 21417) 21417 25871 repeat (length 4454) 25871 29219 unique (length 3348) Creating Unitig 113828 Creating Unitig 113829 For tig 5971 unique region 0 21417 - 0/ 28 reads repeat/unique - unitig 113828 created. For tig 5971 repeat region 21417 25871 - 0/ 0 repeat/unique reads - no new unitig created. For tig 5971 unique region 25871 29219 - 0/ 8 reads repeat/unique - unitig 113829 created. Annotating repeats in reads for tig 5974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5975/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 452:4167 - closest read 632374 ( +452) 0:4190 ( +23) (contained) saved region 452:4167 - closest read 453487 ( +430) 22:7484 ( +3317) (contained) saved region 452:4167 - closest read 288679 ( +426) 26:6670 ( +2503) (contained) saved region 452:4167 - closest read 288680 ( +0) 452:6285 ( +2118) (contained) saved region 452:4167 - closest 5' read 453487 ( +430) 22:7484 ( +3317) saved region 452:4167 - closest 3' read 632374 ( +452) 0:4190 ( +23) saved region 9245:13322 - closest read 215939 ( +4885) 4360:13322 ( +0) (contained) saved region 9245:13322 - closest 5' read 215939 ( +4885) 4360:13322 ( +0) saved region 9245:13322 - closest 3' read 215939 ( +4885) 4360:13322 ( +0) search for confused edges: tig 5975 read 333180 pos 10869-17728 IS confused by 5' edge to read 453638 - best edge read 215939 len 2356 erate 0.0648 score 2203.33 - alt edge len 1249 erate 0.0444 score 1193.54 - absdiff 1009.79 percdiff 59.4539 discard region 452:4167 - no confusion in best edges saved region 9245:13322 - 1 best edges are potentially confused break tig 5975 into up to 3 pieces: 0 8745 unique (length 8745) 8745 13822 repeat (length 5077) 13822 18007 unique (length 4185) Creating Unitig 113830 Creating Unitig 113831 Creating Unitig 113832 For tig 5975 unique region 0 8745 - 0/ 12 reads repeat/unique - unitig 113830 created. For tig 5975 repeat region 8745 13822 - 5/ 0 reads repeat/unique - unitig 113831 created. For tig 5975 unique region 13822 18007 - 0/ 6 reads repeat/unique - unitig 113832 created. Annotating repeats in reads for tig 5985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5990/113047. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7945:11184 - closest 5' read 36245 ( +4403) 3542:10170 ( -1014) saved region 7945:11184 - closest 3' read 79461 ( -370) 8315:14472 ( +3288) search for confused edges: discard region 7945:11184 - no confusion in best edges Annotating repeats in reads for tig 5992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5997/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6847:8160 - closest read 193815 ( +0) 6847:13334 ( +5174) (contained) saved region 6847:8160 - closest read 193812 ( +0) 6847:13327 ( +5167) (contained) saved region 6847:8160 - closest 5' read 193815 ( +0) 6847:13334 ( +5174) saved region 6847:8160 - closest 3' read 193815 ( +0) 6847:13334 ( +5174) search for confused edges: discard region 6847:8160 - no confusion in best edges Annotating repeats in reads for tig 6002/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2367:4471 - contained in read 371533 8- 5141 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6008/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 12458:13751 - contained in read 289643 10605- 17498 thickest edges to the repeat regions: saved region 10460:11234 - closest read 253185 ( +5279) 5181:11240 ( +6) (contained) saved region 10460:11234 - closest read 253187 ( +5268) 5192:11234 ( +0) (contained) saved region 10460:11234 - closest read 253184 ( +5255) 5205:11237 ( +3) (contained) saved region 10460:11234 - closest 5' read 253185 ( +5279) 5181:11240 ( +6) saved region 10460:11234 - closest 3' read 253185 ( +5279) 5181:11240 ( +6) search for confused edges: tig 6008 read 289641 pos 10612-17485 IS confused by 5' edge to read 670113 - best edge read 253188 len 616 erate 0.0655 score 575.65 - alt edge len 532 erate 0.0642 score 497.85 - absdiff 77.81 percdiff 14.4959 saved region 10460:11234 - 1 best edges are potentially confused break tig 6008 into up to 3 pieces: 0 9960 unique (length 9960) 9960 11734 repeat (length 1774) 11734 23233 unique (length 11499) Creating Unitig 113833 Creating Unitig 113834 For tig 6008 unique region 0 9960 - 0/ 10 reads repeat/unique - unitig 113833 created. For tig 6008 repeat region 9960 11734 - 0/ 0 repeat/unique reads - no new unitig created. For tig 6008 unique region 11734 23233 - 0/ 14 reads repeat/unique - unitig 113834 created. Annotating repeats in reads for tig 6009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6017/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5831:8135 - closest read 75687 ( +670) 5161:8245 ( +110) (contained) saved region 5831:8135 - closest read 106182 ( +397) 5434:8135 ( +0) (contained) saved region 5831:8135 - closest read 106183 ( +344) 5487:10268 ( +2133) (contained) saved region 5831:8135 - closest 5' read 106183 ( +344) 5487:10268 ( +2133) saved region 5831:8135 - closest 3' read 75687 ( +670) 5161:8245 ( +110) search for confused edges: discard region 5831:8135 - no confusion in best edges Annotating repeats in reads for tig 6021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6022/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 15059:14101 - contained in read 494044 5553- 14848 discard region 15059:14207 - contained in read 494044 5553- 14848 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6025/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4180:5105 - contained in read 376012 15- 6593 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6029/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6036/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 11446:14353 - contained in read 60503 6526- 14862 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6041/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6049/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 15788:17026 - contained in read 63389 5358- 18027 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6051/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 18686:19433 - contained in read 491859 13640- 22724 discard region 21836:22534 - contained in read 402209 19124- 24190 thickest edges to the repeat regions: saved region 12892:18092 - closest read 678177 ( +0) 12892:18092 ( +0) (contained) saved region 12892:18092 - closest 5' read 678177 ( +0) 12892:18092 ( +0) saved region 12892:18092 - closest 3' read 678177 ( +0) 12892:18092 ( +0) search for confused edges: discard region 12892:18092 - no confusion in best edges Annotating repeats in reads for tig 6053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6058/113047. Annotated with 554 overlaps. Scan reads to discard spanned repeats. discard region 307:3193 - contained in read 16358 0- 8125 thickest edges to the repeat regions: saved region 4003:9688 - closest 5' read 16358 ( +4003) 0:8125 ( -1563) saved region 4003:9688 - closest 3' read 266065 ( -2682) 6685:15288 ( +5600) search for confused edges: tig 6058 read 266065 pos 6685-15288 IS confused by 3' edge to read 69514 - best edge read 16358 len 1438 erate 0.0617 score 1349.28 - alt edge len 1131 erate 0.0637 score 1058.96 - absdiff 290.32 percdiff 24.1107 tig 6058 read 266065 pos 6685-15288 IS confused by 3' edge to read 545260 - best edge read 16358 len 1438 erate 0.0617 score 1349.28 - alt edge len 583 erate 0.0724 score 540.79 - absdiff 808.48 percdiff 85.5509 tig 6058 read 266065 pos 6685-15288 IS confused by 3' edge to read 628000 - best edge read 16358 len 1438 erate 0.0617 score 1349.28 - alt edge len 1074 erate 0.0636 score 1005.69 - absdiff 343.58 percdiff 29.1793 saved region 4003:9688 - 3 best edges are potentially confused break tig 6058 into up to 3 pieces: 0 3503 unique (length 3503) 3503 10188 repeat (length 6685) 10188 17323 unique (length 7135) Creating Unitig 113835 Creating Unitig 113836 Creating Unitig 113837 For tig 6058 unique region 0 3503 - 0/ 6 reads repeat/unique - unitig 113835 created. For tig 6058 repeat region 3503 10188 - 1/ 0 reads repeat/unique - unitig 113836 created. For tig 6058 unique region 10188 17323 - 0/ 7 reads repeat/unique - unitig 113837 created. Annotating repeats in reads for tig 6059/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5916:5003 - contained in read 450643 0- 8657 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6064/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5954:4213 - contained in read 350984 0- 7142 discard region 7205:6318 - contained in read 350984 0- 7142 discard region 8871:9922 - contained in read 660018 5677- 10781 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6066/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 0:4696 - contained in read 711671 0- 7079 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6074/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5580:7471 - contained in read 559355 1982- 9298 discard region 8954:11338 - contained in read 36504 3016- 13755 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6080/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 1521:3270 - contained in read 396380 11- 7729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6085/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6088/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1662:5165 - contained in read 398676 0- 7170 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6091/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6092/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 92:1009 - contained in read 494961 0- 5069 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6096/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4222:8371 - closest read 369028 ( +2768) 1454:8371 ( +0) (contained) saved region 4222:8371 - closest read 589454 ( +38) 4184:10834 ( +2463) (contained) saved region 4222:8371 - closest 5' read 589454 ( +38) 4184:10834 ( +2463) saved region 4222:8371 - closest 3' read 369028 ( +2768) 1454:8371 ( +0) search for confused edges: discard region 4222:8371 - no confusion in best edges Annotating repeats in reads for tig 6097/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3515:7946 - closest read 535106 ( +3515) 0:8361 ( +415) (contained) saved region 3515:7946 - closest 5' read 535106 ( +3515) 0:8361 ( +415) saved region 3515:7946 - closest 3' read 535106 ( +3515) 0:8361 ( +415) saved region 21660:22398 - closest read 715891 ( +0) 21660:27727 ( +5329) (contained) saved region 21660:22398 - closest read 715889 ( +0) 21660:27719 ( +5321) (contained) saved region 21660:22398 - closest 5' read 715891 ( +0) 21660:27727 ( +5329) saved region 21660:22398 - closest 3' read 715891 ( +0) 21660:27727 ( +5329) search for confused edges: discard region 3515:7946 - no confusion in best edges discard region 21660:22398 - no confusion in best edges Annotating repeats in reads for tig 6101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6106/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7409:12800 - closest read 30221 ( +11) 7398:14535 ( +1735) (contained) saved region 7409:12800 - closest 5' read 30221 ( +11) 7398:14535 ( +1735) saved region 7409:12800 - closest 3' read 30221 ( +11) 7398:14535 ( +1735) search for confused edges: discard region 7409:12800 - no confusion in best edges Annotating repeats in reads for tig 6108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6127/113047. Annotated with 274 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13525:29593 - closest 5' read 708191 ( +0) 13525:23757 ( -5836) saved region 13525:29593 - closest 3' read 461854 (-12331) 25856:29845 ( +252) search for confused edges: tig 6127 read 282003 pos 13594-24350 IS confused by 5' edge to read 118286 - best edge read 610638 len 2853 erate 0.0383 score 2743.73 - alt edge len 2150 erate 0.0331 score 2078.84 - absdiff 664.90 percdiff 27.5743 tig 6127 read 282003 pos 13594-24350 IS confused by 5' edge to read 327627 - best edge read 610638 len 2853 erate 0.0383 score 2743.73 - alt edge len 2211 erate 0.0204 score 2165.90 - absdiff 577.83 percdiff 23.5388 tig 6127 read 282003 pos 13594-24350 IS confused by 5' edge to read 548004 - best edge read 610638 len 2853 erate 0.0383 score 2743.73 - alt edge len 1027 erate 0.0352 score 990.85 - absdiff 1752.88 percdiff 93.8730 tig 6127 read 660247 pos 21237-29436 IS confused by 3' edge to read 118286 - best edge read 708191 len 1869 erate 0.0475 score 1780.22 - alt edge len 1109 erate 0.0461 score 1057.88 - absdiff 722.35 percdiff 50.9036 tig 6127 read 660247 pos 21237-29436 IS confused by 3' edge to read 327627 - best edge read 708191 len 1869 erate 0.0475 score 1780.22 - alt edge len 1172 erate 0.0361 score 1129.69 - absdiff 650.53 percdiff 44.7114 tig 6127 read 660247 pos 21237-29436 IS confused by 3' edge to read 610638 - best edge read 708191 len 1869 erate 0.0475 score 1780.22 - alt edge len 1826 erate 0.0663 score 1704.94 - absdiff 75.29 percdiff 4.3204 tig 6127 read 461854 pos 25856-29845 IS confused by 5' edge to read 182788 - best edge read 660247 len 3674 erate 0.0612 score 3449.15 - alt edge len 2279 erate 0.0657 score 2129.27 - absdiff 1319.88 percdiff 47.3210 tig 6127 read 461854 pos 25856-29845 IS confused by 5' edge to read 202660 - best edge read 660247 len 3674 erate 0.0612 score 3449.15 - alt edge len 3165 erate 0.0619 score 2969.09 - absdiff 480.06 percdiff 14.9594 tig 6127 read 461854 pos 25856-29845 IS confused by 5' edge to read 202661 - best edge read 660247 len 3674 erate 0.0612 score 3449.15 - alt edge len 3071 erate 0.0586 score 2891.04 - absdiff 558.11 percdiff 17.6055 tig 6127 read 461854 pos 25856-29845 IS confused by 5' edge to read 318012 - best edge read 660247 len 3674 erate 0.0612 score 3449.15 - alt edge len 2384 erate 0.0497 score 2265.52 - absdiff 1183.64 percdiff 41.4245 saved region 13525:29593 - 10 best edges are potentially confused break tig 6127 into up to 3 pieces: 0 13025 unique (length 13025) 13025 30093 repeat (length 17068) 30093 36151 unique (length 6058) Creating Unitig 113838 Creating Unitig 113839 Creating Unitig 113840 For tig 6127 unique region 0 13025 - 0/ 11 reads repeat/unique - unitig 113838 created. For tig 6127 repeat region 13025 30093 - 37/ 0 reads repeat/unique - unitig 113839 created. For tig 6127 unique region 30093 36151 - 0/ 6 reads repeat/unique - unitig 113840 created. Annotating repeats in reads for tig 6129/113047. Annotated with 89 overlaps. Scan reads to discard spanned repeats. discard region 2039:9335 - contained in read 157696 1292- 9335 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6132/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2773:5800 - contained in read 419051 44- 5800 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6133/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6136/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4079:5282 - closest 5' read 499821 ( +4079) 0:5246 ( -36) saved region 4079:5282 - closest 3' read 387697 ( -479) 4558:14484 ( +9202) search for confused edges: discard region 4079:5282 - no confusion in best edges Annotating repeats in reads for tig 6140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6167/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6171/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 20819:19273 - contained in read 312211 13660- 24941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6173/113047. Annotated with 72 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12183:18666 - closest 5' read 597714 ( +364) 11819:16097 ( -2569) saved region 12183:18666 - closest 3' read 700656 ( -15) 12198:18666 ( +0) search for confused edges: tig 6173 read 269090 pos 10252-16015 IS confused by 3' edge to read 436166 - best edge read 700655 len 3667 erate 0.0603 score 3445.88 - alt edge len 2294 erate 0.0144 score 2260.97 - absdiff 1184.91 percdiff 41.5260 saved region 12183:18666 - 1 best edges are potentially confused break tig 6173 into up to 3 pieces: 0 11683 unique (length 11683) 11683 19166 repeat (length 7483) 19166 29842 unique (length 10676) Creating Unitig 113841 Creating Unitig 113842 Creating Unitig 113843 For tig 6173 unique region 0 11683 - 0/ 30 reads repeat/unique - unitig 113841 created. For tig 6173 repeat region 11683 19166 - 22/ 0 reads repeat/unique - unitig 113842 created. For tig 6173 unique region 19166 29842 - 0/ 8 reads repeat/unique - unitig 113843 created. Annotating repeats in reads for tig 6175/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 1173:6653 - contained in read 434801 585- 6653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6192/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7464:6910 - contained in read 211122 2075- 7476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6202/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4429:11535 - closest 5' read 548257 ( +4397) 32:5949 ( -5586) saved region 4429:11535 - closest 3' read 445048 ( -145) 4574:11535 ( +0) search for confused edges: tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 14906 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 554 erate 0.0366 score 533.72 - absdiff 722.23 percdiff 80.7104 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 14907 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 554 erate 0.0406 score 531.51 - absdiff 724.44 percdiff 81.0584 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 14909 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 552 erate 0.0350 score 532.68 - absdiff 723.27 percdiff 80.8742 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 71765 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1047 erate 0.0559 score 988.47 - absdiff 267.48 percdiff 23.8348 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 90741 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 847 erate 0.0414 score 811.93 - absdiff 444.02 percdiff 42.9439 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 227707 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 844 erate 0.0517 score 800.37 - absdiff 455.58 percdiff 44.3108 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 259650 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1290 erate 0.0645 score 1206.80 - absdiff 49.15 percdiff 3.9918 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 272001 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1254 erate 0.0591 score 1179.89 - absdiff 76.06 percdiff 6.2452 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 281301 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 941 erate 0.0704 score 874.75 - absdiff 381.20 percdiff 35.7812 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 369317 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1133 erate 0.0574 score 1067.97 - absdiff 187.98 percdiff 16.1782 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 437249 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1288 erate 0.0620 score 1208.14 - absdiff 47.81 percdiff 3.8802 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 441438 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1267 erate 0.0525 score 1200.48 - absdiff 55.47 percdiff 4.5161 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 449267 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 668 erate 0.0637 score 625.45 - absdiff 630.50 percdiff 67.0247 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 449272 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 666 erate 0.0515 score 631.70 - absdiff 624.25 percdiff 66.1403 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 486157 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1258 erate 0.0445 score 1202.02 - absdiff 53.93 percdiff 4.3882 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 519122 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 597 erate 0.0441 score 570.67 - absdiff 685.28 percdiff 75.0322 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 522986 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 928 erate 0.0465 score 884.85 - absdiff 371.10 percdiff 34.6695 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 532508 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 567 erate 0.0599 score 533.04 - absdiff 722.91 percdiff 80.8182 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 550995 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 1017 erate 0.0610 score 954.96 - absdiff 300.99 percdiff 27.2274 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 590751 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 823 erate 0.0510 score 781.03 - absdiff 474.92 percdiff 46.6301 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 590752 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 833 erate 0.0672 score 777.02 - absdiff 478.93 percdiff 47.1160 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 696232 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 548 erate 0.0681 score 510.68 - absdiff 745.27 percdiff 84.3717 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 703027 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 591 erate 0.0682 score 550.69 - absdiff 705.26 percdiff 78.0736 tig 6202 read 445048 pos 4574-11535 IS confused by 5' edge to read 707181 - best edge read 548257 len 1355 erate 0.0731 score 1255.95 - alt edge len 561 erate 0.0589 score 527.96 - absdiff 727.99 percdiff 81.6178 saved region 4429:11535 - 24 best edges are potentially confused break tig 6202 into up to 2 pieces: 0 3929 unique (length 3929) 3929 11535 repeat (length 7606) Creating Unitig 113844 Creating Unitig 113845 For tig 6202 unique region 0 3929 - 0/ 5 reads repeat/unique - unitig 113844 created. For tig 6202 repeat region 3929 11535 - 2/ 0 reads repeat/unique - unitig 113845 created. Annotating repeats in reads for tig 6204/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6215/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6222/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6105:7521 - contained in read 123478 0- 8583 discard region 17029:17753 - contained in read 451517 12707- 23308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6224/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6231/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6237/113047. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 6399:9881 - contained in read 147699 3114- 11884 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6253/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6874:7448 - contained in read 292118 1592- 9476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6257/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10838:13151 - closest read 433757 ( +0) 10838:14660 ( +1509) (contained) saved region 10838:13151 - closest 5' read 433757 ( +0) 10838:14660 ( +1509) saved region 10838:13151 - closest 3' read 433757 ( +0) 10838:14660 ( +1509) search for confused edges: discard region 10838:13151 - no confusion in best edges Annotating repeats in reads for tig 6261/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5770:7491 - contained in read 633814 3198- 8477 discard region 7764:8477 - contained in read 262359 3295- 9357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6267/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6268/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2447:4205 - contained in read 467308 0- 8726 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6287/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6289/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6291/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6307/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6652:8284 - contained in read 690561 2703- 9902 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6312/113047. Annotated with 809 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2526:11736 - closest 5' read 556591 ( +2526) 0:5935 ( -5801) saved region 2526:11736 - closest 3' read 675961 ( -4726) 7252:11736 ( +0) search for confused edges: tig 6312 read 481005 pos 5258-11707 IS confused by 5' edge to read 60308 - best edge read 556591 len 590 erate 0.0659 score 551.12 - alt edge len 586 erate 0.0584 score 551.78 - absdiff 0.66 percdiff 0.1194 saved region 2526:11736 - 1 best edges are potentially confused break tig 6312 into up to 2 pieces: 0 2026 unique (length 2026) 2026 11736 repeat (length 9710) Creating Unitig 113846 Creating Unitig 113847 For tig 6312 unique region 0 2026 - 0/ 5 reads repeat/unique - unitig 113846 created. For tig 6312 repeat region 2026 11736 - 21/ 0 reads repeat/unique - unitig 113847 created. Annotating repeats in reads for tig 6318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6321/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6326/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6342/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6349/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 760:6684 - contained in read 637155 1- 8739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6350/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 349:3642 - closest read 675502 ( +349) 0:3642 ( +0) (contained) saved region 349:3642 - closest read 675501 ( +348) 1:6094 ( +2452) (contained) saved region 349:3642 - closest read 675500 ( +337) 12:6102 ( +2460) (contained) saved region 349:3642 - closest 5' read 675500 ( +337) 12:6102 ( +2460) saved region 349:3642 - closest 3' read 675502 ( +349) 0:3642 ( +0) search for confused edges: discard region 349:3642 - no confusion in best edges Annotating repeats in reads for tig 6354/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6363/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 3155:4501 - contained in read 499851 0- 15274 thickest edges to the repeat regions: saved region 13202:15740 - closest read 716231 ( +487) 12715:18720 ( +2980) (contained) saved region 13202:15740 - closest read 716234 ( +485) 12717:18726 ( +2986) (contained) saved region 13202:15740 - closest read 716239 ( +482) 12720:18730 ( +2990) (contained) saved region 13202:15740 - closest read 716236 ( +481) 12721:18727 ( +2987) (contained) saved region 13202:15740 - closest read 716237 ( +480) 12722:18724 ( +2984) (contained) saved region 13202:15740 - closest read 716232 ( +477) 12725:18708 ( +2968) (contained) saved region 13202:15740 - closest read 716233 ( +476) 12726:18732 ( +2992) (contained) saved region 13202:15740 - closest read 716235 ( +476) 12726:18724 ( +2984) (contained) saved region 13202:15740 - closest read 716238 ( +471) 12731:18730 ( +2990) (contained) saved region 13202:15740 - closest read 1510 ( +365) 12837:18178 ( +2438) (contained) saved region 13202:15740 - closest read 216569 ( +188) 13014:19231 ( +3491) (contained) saved region 13202:15740 - closest read 583629 ( +75) 13127:17711 ( +1971) (contained) saved region 13202:15740 - closest 5' read 216569 ( +188) 13014:19231 ( +3491) saved region 13202:15740 - closest 3' read 716231 ( +487) 12715:18720 ( +2980) search for confused edges: discard region 13202:15740 - no confusion in best edges Annotating repeats in reads for tig 6368/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6382/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3607:4458 - contained in read 507544 0- 5118 thickest edges to the repeat regions: saved region 7273:11905 - closest read 304824 ( +194) 7079:11905 ( +0) (contained) saved region 7273:11905 - closest 5' read 304824 ( +194) 7079:11905 ( +0) saved region 7273:11905 - closest 3' read 304824 ( +194) 7079:11905 ( +0) search for confused edges: discard region 7273:11905 - no confusion in best edges Annotating repeats in reads for tig 6388/113047. Annotated with 161 overlaps. Scan reads to discard spanned repeats. discard region 0:6330 - contained in read 332860 0- 8309 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6396/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7362:6683 - contained in read 77215 1403- 7355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6429/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6448/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6451/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6454/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 18530:19987 - contained in read 595192 13601- 21044 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6462/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6465/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1648:303 - contained in read 550641 0- 11017 discard region 1899:545 - contained in read 550641 0- 11017 discard region 2378:897 - contained in read 550641 0- 11017 discard region 2626:3615 - contained in read 550641 0- 11017 discard region 3757:4770 - contained in read 550641 0- 11017 discard region 8277:6961 - contained in read 550641 0- 11017 discard region 8756:7389 - contained in read 550641 0- 11017 thickest edges to the repeat regions: saved region 12318:19158 - closest read 636413 ( +0) 12318:19158 ( +0) (contained) saved region 12318:19158 - closest 5' read 636413 ( +0) 12318:19158 ( +0) saved region 12318:19158 - closest 3' read 636413 ( +0) 12318:19158 ( +0) search for confused edges: discard region 12318:19158 - no confusion in best edges Annotating repeats in reads for tig 6471/113047. Annotated with 127 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7219:18802 - closest 5' read 412585 ( +2433) 4786:11290 ( -7512) saved region 7219:18802 - closest 3' read 127917 ( -3171) 10390:18970 ( +168) search for confused edges: tig 6471 read 75783 pos 10352-18388 NOT confused by 3' edge to read 140217 - best edge read 75782 len 7869 erate 0.0132 score 7765.13 - alt edge len 584 erate 0.0642 score 546.51 - absdiff 7218.62 percdiff 173.6992 tig 6471 read 75783 pos 10352-18388 NOT confused by 3' edge to read 229553 - best edge read 75782 len 7869 erate 0.0132 score 7765.13 - alt edge len 926 erate 0.0596 score 870.81 - absdiff 6894.32 percdiff 159.6657 tig 6471 read 75783 pos 10352-18388 NOT confused by 5' edge to read 395792 - best edge read 127917 len 7882 erate 0.0258 score 7678.64 - alt edge len 5078 erate 0.0372 score 4889.10 - absdiff 2789.55 percdiff 44.3922 tig 6471 read 75783 pos 10352-18388 NOT confused by 5' edge to read 675476 - best edge read 127917 len 7882 erate 0.0258 score 7678.64 - alt edge len 4072 erate 0.0487 score 3873.69 - absdiff 3804.95 percdiff 65.8733 tig 6471 read 75782 pos 10354-18318 IS confused by 5' edge to read 229553 - best edge read 412585 len 928 erate 0.0509 score 880.76 - alt edge len 925 erate 0.0706 score 859.70 - absdiff 21.07 percdiff 2.4212 tig 6471 read 75782 pos 10354-18318 NOT confused by 3' edge to read 395792 - best edge read 75783 len 7863 erate 0.0132 score 7759.21 - alt edge len 5005 erate 0.0388 score 4810.81 - absdiff 2948.40 percdiff 46.9117 tig 6471 read 75782 pos 10354-18318 NOT confused by 3' edge to read 675476 - best edge read 75783 len 7863 erate 0.0132 score 7759.21 - alt edge len 4002 erate 0.0500 score 3801.90 - absdiff 3957.31 percdiff 68.4590 tig 6471 read 127917 pos 10390-18970 NOT confused by 3' edge to read 229553 - best edge read 75783 len 7916 erate 0.0258 score 7711.77 - alt edge len 887 erate 0.0713 score 823.76 - absdiff 6888.01 percdiff 161.3963 saved region 7219:18802 - 1 best edges are potentially confused break tig 6471 into up to 3 pieces: 0 6719 unique (length 6719) 6719 19302 repeat (length 12583) 19302 20300 unique (length 998) Creating Unitig 113848 Creating Unitig 113849 Creating Unitig 113850 For tig 6471 unique region 0 6719 - 0/ 9 reads repeat/unique - unitig 113848 created. For tig 6471 repeat region 6719 19302 - 40/ 0 reads repeat/unique - unitig 113849 created. For tig 6471 unique region 19302 20300 - 0/ 4 reads repeat/unique - unitig 113850 created. Annotating repeats in reads for tig 6477/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6489/113047. Annotated with 188 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6882:11308 - closest read 388130 ( +0) 6882:12795 ( +1487) (contained) saved region 6882:11308 - closest 5' read 388130 ( +0) 6882:12795 ( +1487) saved region 6882:11308 - closest 3' read 388130 ( +0) 6882:12795 ( +1487) search for confused edges: tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 47237 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 2092 erate 0.0312 score 2026.73 - absdiff 9.79 percdiff 0.4819 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 200302 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 908 erate 0.0345 score 876.67 - absdiff 1159.85 percdiff 79.6271 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 338743 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 688 erate 0.0616 score 645.62 - absdiff 1390.90 percdiff 103.7158 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 556240 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 907 erate 0.0378 score 872.72 - absdiff 1163.80 percdiff 80.0076 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 623947 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 2099 erate 0.0368 score 2021.76 - absdiff 14.76 percdiff 0.7275 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 635630 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 2093 erate 0.0364 score 2016.81 - absdiff 19.70 percdiff 0.9723 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 708594 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 790 erate 0.0408 score 757.77 - absdiff 1278.75 percdiff 91.5261 tig 6489 read 284754 pos 3400-9061 IS confused by 5' edge to read 708595 - best edge read 388130 len 2141 erate 0.0488 score 2036.52 - alt edge len 798 erate 0.0429 score 763.77 - absdiff 1272.75 percdiff 90.9017 saved region 6882:11308 - 8 best edges are potentially confused break tig 6489 into up to 3 pieces: 0 6382 unique (length 6382) 6382 11808 repeat (length 5426) 11808 13172 unique (length 1364) Creating Unitig 113851 Creating Unitig 113852 Creating Unitig 113853 For tig 6489 unique region 0 6382 - 0/ 11 reads repeat/unique - unitig 113851 created. For tig 6489 repeat region 6382 11808 - 2/ 0 reads repeat/unique - unitig 113853 created. For tig 6489 unique region 11808 13172 - 0/ 3 reads repeat/unique - unitig 113852 created. Annotating repeats in reads for tig 6491/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 6245:6908 - contained in read 382541 634- 11040 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6504/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 10205:12428 - contained in read 590207 6227- 18380 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6506/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 977:1614 - contained in read 552328 0- 2597 discard region 1896:3325 - contained in read 73910 977- 7021 discard region 9855:10383 - contained in read 680157 7924- 12072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6523/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6527/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9353:8245 - contained in read 558166 0- 13093 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6557/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 3097:6378 - contained in read 396023 4- 6378 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6561/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6565/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 6238:11450 - contained in read 563853 5716- 16007 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6568/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3721:5326 - contained in read 263804 1474- 12671 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6571/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 1643:5054 - contained in read 453931 0- 7182 discard region 9037:13136 - contained in read 497300 5751- 13136 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6584/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9771:10641 - contained in read 569965 8403- 10895 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6594/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:2119 - contained in read 211901 0- 5662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6605/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 673:0 - contained in read 612179 0- 8784 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6614/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1638:3987 - contained in read 576230 0- 5637 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6622/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1544:3971 - contained in read 217431 0- 5697 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6626/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:3113 - contained in read 466046 0- 5071 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6630/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6646/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12154:11146 - contained in read 625673 3193- 12154 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6652/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 21153:22401 - contained in read 40697 15758- 25201 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6668/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6673/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:631 - contained in read 213508 0- 6308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6677/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 609:1192 - contained in read 478561 0- 3783 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6694/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6706/113047. Annotated with 304 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4644:12452 - closest read 312481 ( +250) 4394:12452 ( +0) (contained) saved region 4644:12452 - closest 5' read 312481 ( +250) 4394:12452 ( +0) saved region 4644:12452 - closest 3' read 312481 ( +250) 4394:12452 ( +0) search for confused edges: discard region 4644:12452 - no confusion in best edges Annotating repeats in reads for tig 6717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6722/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 5821:6472 - contained in read 612721 0- 7103 discard region 8034:17429 - contained in read 515377 6895- 18316 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6723/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6727/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 10660:14692 - contained in read 348390 2176- 14692 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6732/113047. Annotated with 46 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7965:10424 - closest 5' read 616264 ( +7693) 272:9714 ( -710) saved region 7965:10424 - closest 3' read 709250 ( -18) 7983:14980 ( +4556) search for confused edges: tig 6732 read 616264 pos 272-9714 IS confused by 5' edge to read 296914 - best edge read 709250 len 1712 erate 0.0625 score 1605.00 - alt edge len 545 erate 0.0646 score 509.79 - absdiff 1095.21 percdiff 103.5758 tig 6732 read 616264 pos 272-9714 IS confused by 5' edge to read 296915 - best edge read 709250 len 1712 erate 0.0625 score 1605.00 - alt edge len 556 erate 0.0687 score 517.80 - absdiff 1087.20 percdiff 102.4304 tig 6732 read 616264 pos 272-9714 IS confused by 5' edge to read 606188 - best edge read 709250 len 1712 erate 0.0625 score 1605.00 - alt edge len 1524 erate 0.0483 score 1450.39 - absdiff 154.61 percdiff 10.1204 tig 6732 read 616264 pos 272-9714 IS confused by 5' edge to read 606191 - best edge read 709250 len 1712 erate 0.0625 score 1605.00 - alt edge len 1526 erate 0.0538 score 1443.90 - absdiff 161.10 percdiff 10.5677 tig 6732 read 616264 pos 272-9714 IS confused by 5' edge to read 606193 - best edge read 709250 len 1712 erate 0.0625 score 1605.00 - alt edge len 1532 erate 0.0523 score 1451.88 - absdiff 153.12 percdiff 10.0183 tig 6732 read 616264 pos 272-9714 IS confused by 5' edge to read 692729 - best edge read 709250 len 1712 erate 0.0625 score 1605.00 - alt edge len 1688 erate 0.0534 score 1597.86 - absdiff 7.14 percdiff 0.4458 saved region 7965:10424 - 6 best edges are potentially confused break tig 6732 into up to 3 pieces: 0 7465 unique (length 7465) 7465 10924 repeat (length 3459) 10924 19644 unique (length 8720) Creating Unitig 113854 Creating Unitig 113855 Creating Unitig 113856 For tig 6732 unique region 0 7465 - 0/ 4 reads repeat/unique - unitig 113854 created. For tig 6732 repeat region 7465 10924 - 2/ 0 reads repeat/unique - unitig 113855 created. For tig 6732 unique region 10924 19644 - 0/ 14 reads repeat/unique - unitig 113856 created. Annotating repeats in reads for tig 6734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6753/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6754/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6759/113047. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 1703:19830 - contained in read 426844 735- 19830 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6764/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6789/113047. Annotated with 156 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11918:17711 - closest 5' read 268219 ( +3399) 8519:14518 ( -3193) saved region 11918:17711 - closest 3' read 490591 ( -82) 12000:22368 ( +4657) search for confused edges: tig 6789 read 426493 pos 6984-13789 IS confused by 3' edge to read 212460 - best edge read 490591 len 1698 erate 0.0565 score 1602.06 - alt edge len 1661 erate 0.0446 score 1586.92 - absdiff 15.14 percdiff 0.9497 tig 6789 read 426493 pos 6984-13789 IS confused by 3' edge to read 272482 - best edge read 490591 len 1698 erate 0.0565 score 1602.06 - alt edge len 1544 erate 0.0519 score 1463.87 - absdiff 138.20 percdiff 9.0150 tig 6789 read 426493 pos 6984-13789 IS confused by 3' edge to read 577897 - best edge read 490591 len 1698 erate 0.0565 score 1602.06 - alt edge len 1662 erate 0.0506 score 1577.90 - absdiff 24.16 percdiff 1.5195 saved region 11918:17711 - 3 best edges are potentially confused break tig 6789 into up to 3 pieces: 0 11418 unique (length 11418) 11418 18211 repeat (length 6793) 18211 24167 unique (length 5956) Creating Unitig 113857 Creating Unitig 113858 Creating Unitig 113859 For tig 6789 unique region 0 11418 - 0/ 12 reads repeat/unique - unitig 113857 created. For tig 6789 repeat region 11418 18211 - 11/ 0 reads repeat/unique - unitig 113858 created. For tig 6789 unique region 18211 24167 - 0/ 10 reads repeat/unique - unitig 113859 created. Annotating repeats in reads for tig 6794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6805/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 1362:7319 - contained in read 639840 10- 7319 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6817/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6820/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6729 - closest read 44331 ( +0) 0:6900 ( +171) (contained) saved region 0:6729 - closest 5' read 44331 ( +0) 0:6900 ( +171) saved region 0:6729 - closest 3' read 44331 ( +0) 0:6900 ( +171) search for confused edges: discard region 0:6729 - no confusion in best edges Annotating repeats in reads for tig 6821/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 6391:9009 - contained in read 531638 551- 9767 thickest edges to the repeat regions: saved region 16043:20205 - closest read 272636 ( +0) 16043:20205 ( +0) (contained) saved region 16043:20205 - closest 5' read 272636 ( +0) 16043:20205 ( +0) saved region 16043:20205 - closest 3' read 272636 ( +0) 16043:20205 ( +0) search for confused edges: discard region 16043:20205 - no confusion in best edges Annotating repeats in reads for tig 6825/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6826/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4709:5661 - contained in read 644708 33- 5927 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6828/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 5062:7870 - contained in read 659839 0- 13144 thickest edges to the repeat regions: saved region 9200:14067 - closest read 61130 ( +2086) 7114:14067 ( +0) (contained) saved region 9200:14067 - closest 5' read 61130 ( +2086) 7114:14067 ( +0) saved region 9200:14067 - closest 3' read 61130 ( +2086) 7114:14067 ( +0) search for confused edges: discard region 9200:14067 - no confusion in best edges Annotating repeats in reads for tig 6835/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6693:6029 - contained in read 617432 4398- 7040 discard region 10266:12823 - contained in read 491874 9168- 15492 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6842/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4579:8489 - contained in read 229553 2175- 10416 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6843/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12686:15842 - contained in read 347046 9016- 17154 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6851/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5973:6578 - contained in read 298897 1154- 10355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6862/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 7362:8329 - contained in read 685897 6092- 8329 thickest edges to the repeat regions: saved region 6055:7257 - closest read 712105 ( +3986) 2069:7257 ( +0) (contained) saved region 6055:7257 - closest 5' read 712105 ( +3986) 2069:7257 ( +0) saved region 6055:7257 - closest 3' read 712105 ( +3986) 2069:7257 ( +0) search for confused edges: discard region 6055:7257 - no confusion in best edges Annotating repeats in reads for tig 6864/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3314:7830 - closest 5' read 181991 ( +1108) 2206:7584 ( -246) saved region 3314:7830 - closest 3' read 198277 ( -4) 3318:8459 ( +629) search for confused edges: tig 6864 read 181991 pos 2206-7584 IS confused by 3' edge to read 332365 - best edge read 198277 len 4238 erate 0.0095 score 4197.74 - alt edge len 3506 erate 0.0557 score 3310.72 - absdiff 887.02 percdiff 23.6273 saved region 3314:7830 - 1 best edges are potentially confused break tig 6864 into up to 3 pieces: 0 2814 unique (length 2814) 2814 8330 repeat (length 5516) 8330 9993 unique (length 1663) Creating Unitig 113860 Creating Unitig 113861 Creating Unitig 113862 For tig 6864 unique region 0 2814 - 0/ 4 reads repeat/unique - unitig 113860 created. For tig 6864 repeat region 2814 8330 - 5/ 0 reads repeat/unique - unitig 113861 created. For tig 6864 unique region 8330 9993 - 0/ 8 reads repeat/unique - unitig 113862 created. Annotating repeats in reads for tig 6872/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6883/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3944:4650 - contained in read 662872 14- 5463 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6896/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2432:8023 - closest read 209410 ( +264) 2168:8023 ( +0) (contained) saved region 2432:8023 - closest 5' read 209410 ( +264) 2168:8023 ( +0) saved region 2432:8023 - closest 3' read 209410 ( +264) 2168:8023 ( +0) search for confused edges: discard region 2432:8023 - no confusion in best edges Annotating repeats in reads for tig 6899/113047. Annotated with 229 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3636:7943 - closest read 602016 ( +3636) 0:7943 ( +0) (contained) saved region 3636:7943 - closest read 602015 ( +3607) 29:7943 ( +0) (contained) saved region 3636:7943 - closest 5' read 602016 ( +3636) 0:7943 ( +0) saved region 3636:7943 - closest 3' read 602016 ( +3636) 0:7943 ( +0) saved region 11629:14526 - closest read 656839 ( +4453) 7176:14526 ( +0) (contained) saved region 11629:14526 - closest 5' read 656839 ( +4453) 7176:14526 ( +0) saved region 11629:14526 - closest 3' read 656839 ( +4453) 7176:14526 ( +0) search for confused edges: discard region 3636:7943 - no confusion in best edges discard region 11629:14526 - no confusion in best edges Annotating repeats in reads for tig 6915/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6916/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6933/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6943/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8042:8594 - contained in read 582379 47- 9206 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6964/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7030/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7267:8061 - contained in read 702908 4298- 10253 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7035/113047. Annotated with 295 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5337:7460 - closest 5' read 624408 ( +5328) 9:7414 ( -46) saved region 5337:7460 - closest 3' read 130013 ( -151) 5488:11158 ( +3698) search for confused edges: tig 7035 read 130013 pos 5488-11158 IS confused by 5' edge to read 238485 - best edge read 624409 len 1889 erate 0.0417 score 1810.23 - alt edge len 1181 erate 0.0645 score 1104.83 - absdiff 705.40 percdiff 48.3973 tig 7035 read 130013 pos 5488-11158 IS confused by 5' edge to read 296230 - best edge read 624409 len 1889 erate 0.0417 score 1810.23 - alt edge len 1869 erate 0.0528 score 1770.32 - absdiff 39.91 percdiff 2.2294 saved region 5337:7460 - 2 best edges are potentially confused break tig 7035 into up to 3 pieces: 0 4837 unique (length 4837) 4837 7960 repeat (length 3123) 7960 11876 unique (length 3916) Creating Unitig 113863 Creating Unitig 113864 Creating Unitig 113865 For tig 7035 unique region 0 4837 - 0/ 5 reads repeat/unique - unitig 113863 created. For tig 7035 repeat region 4837 7960 - 10/ 0 reads repeat/unique - unitig 113864 created. For tig 7035 unique region 7960 11876 - 0/ 10 reads repeat/unique - unitig 113865 created. Annotating repeats in reads for tig 7043/113047. Annotated with 515 overlaps. Scan reads to discard spanned repeats. discard region 0:4858 - contained in read 182335 0- 5989 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7045/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 6758:10173 - contained in read 652521 5074- 10173 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7046/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:3112 - contained in read 709170 0- 6452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7049/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17703:20317 - contained in read 240454 15777- 20341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7052/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:7007 - contained in read 191865 0- 11077 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7083/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:6442 - contained in read 464978 0- 6944 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7085/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8184:9742 - closest read 203028 ( +433) 7751:9898 ( +156) (contained) saved region 8184:9742 - closest read 699819 ( +432) 7752:9742 ( +0) (contained) saved region 8184:9742 - closest read 203027 ( +427) 7757:9910 ( +168) (contained) saved region 8184:9742 - closest read 553995 ( +369) 7815:16397 ( +6655) (contained) saved region 8184:9742 - closest read 553996 ( +364) 7820:16362 ( +6620) (contained) saved region 8184:9742 - closest read 553994 ( +363) 7821:16417 ( +6675) (contained) saved region 8184:9742 - closest 5' read 553994 ( +363) 7821:16417 ( +6675) saved region 8184:9742 - closest 3' read 203028 ( +433) 7751:9898 ( +156) search for confused edges: discard region 8184:9742 - no confusion in best edges Annotating repeats in reads for tig 7086/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 4267:4933 - contained in read 512204 2757- 12379 discard region 12220:17652 - contained in read 56820 2778- 17652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7103/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 12218:13884 - contained in read 315514 9941- 21758 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7105/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7108/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4997:6432 - contained in read 155818 81- 7469 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7111/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7112/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 10278:11315 - contained in read 628694 7974- 11315 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7115/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7120/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7122/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7124/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1458:3005 - contained in read 77293 0- 7395 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7129/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5666:7809 - contained in read 46059 1187- 8977 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7131/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2517:3549 - contained in read 580434 0- 6305 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7133/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7134/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6801:6266 - contained in read 659884 0- 6794 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7135/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 3314:6747 - contained in read 13952 2617- 7882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7136/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7138/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5109:3422 - contained in read 464243 0- 5533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7140/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4010:5915 - closest read 639645 ( +1596) 2414:5915 ( +0) (contained) saved region 4010:5915 - closest 5' read 639645 ( +1596) 2414:5915 ( +0) saved region 4010:5915 - closest 3' read 639645 ( +1596) 2414:5915 ( +0) search for confused edges: discard region 4010:5915 - no confusion in best edges Annotating repeats in reads for tig 7141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7142/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 989:2377 - contained in read 608266 0- 5817 discard region 9589:10532 - contained in read 57468 267- 12789 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7145/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7147/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 5127:6705 - contained in read 17263 0- 9615 discard region 8198:9803 - contained in read 644685 4349- 13433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7148/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7149/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 1454:6393 - contained in read 219511 0- 7671 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7164/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7165/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7168/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1434:9543 - closest 5' read 462700 ( +1434) 0:8735 ( -808) saved region 1434:9543 - closest 3' read 669769 ( -2875) 4309:10646 ( +1103) search for confused edges: tig 7168 read 467637 pos 2757-9274 NOT confused by 5' edge to read 54181 - best edge read 669769 len 4881 erate 0.0398 score 4686.74 - alt edge len 873 erate 0.0346 score 842.79 - absdiff 3843.94 percdiff 139.0332 tig 7168 read 467637 pos 2757-9274 NOT confused by 5' edge to read 54182 - best edge read 669769 len 4881 erate 0.0398 score 4686.74 - alt edge len 872 erate 0.0381 score 838.78 - absdiff 3847.96 percdiff 139.2797 tig 7168 read 467637 pos 2757-9274 NOT confused by 3' edge to read 344119 - best edge read 462700 len 5890 erate 0.0301 score 5712.71 - alt edge len 3005 erate 0.0381 score 2890.51 - absdiff 2822.20 percdiff 65.6080 tig 7168 read 669769 pos 4309-10646 NOT confused by 3' edge to read 344119 - best edge read 467637 len 4910 erate 0.0398 score 4714.58 - alt edge len 1470 erate 0.0343 score 1419.58 - absdiff 3295.00 percdiff 107.4313 discard region 1434:9543 - no confusion in best edges Annotating repeats in reads for tig 7171/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. discard region 3337:8101 - contained in read 22684 32- 8101 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7174/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7175/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:1141 - contained in read 58825 0- 6710 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7178/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2471:4586 - contained in read 242324 0- 8379 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7180/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7193/113047. Annotated with 155 overlaps. Scan reads to discard spanned repeats. discard region 6221:7390 - contained in read 328672 283- 7390 thickest edges to the repeat regions: saved region 413:4172 - closest read 27206 ( +413) 0:4172 ( +0) (contained) saved region 413:4172 - closest read 328672 ( +130) 283:7390 ( +3218) (contained) saved region 413:4172 - closest read 468042 ( +70) 343:6087 ( +1915) (contained) saved region 413:4172 - closest 5' read 328672 ( +130) 283:7390 ( +3218) saved region 413:4172 - closest 3' read 27206 ( +413) 0:4172 ( +0) search for confused edges: discard region 413:4172 - no confusion in best edges Annotating repeats in reads for tig 7196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7199/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 618:1715 - contained in read 28425 0- 7599 discard region 4871:6860 - contained in read 28425 0- 7599 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7202/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7204/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 8058:8877 - contained in read 363096 2088- 9905 discard region 12895:13968 - contained in read 29813 7031- 14680 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7205/113047. Annotated with 517 overlaps. Scan reads to discard spanned repeats. discard region 4158:8313 - contained in read 69310 995- 8313 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7206/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7209/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6997:8345 - contained in read 341550 5613- 11849 discard region 10781:11312 - contained in read 341550 5613- 11849 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7212/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 4942:9215 - contained in read 628957 1470- 13972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7213/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 8788:15534 - contained in read 200600 7958- 17907 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7214/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7216/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 8413:13348 - contained in read 384601 5815- 16480 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7220/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5237:12450 - contained in read 33508 2240- 12450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7222/113047. Annotated with 87 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4248:9595 - closest read 109504 ( +2394) 1854:9595 ( +0) (contained) saved region 4248:9595 - closest 5' read 109504 ( +2394) 1854:9595 ( +0) saved region 4248:9595 - closest 3' read 109504 ( +2394) 1854:9595 ( +0) search for confused edges: tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 68983 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 3966 erate 0.0178 score 3895.41 - absdiff 685.83 percdiff 16.1816 tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 353063 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 3445 erate 0.0552 score 3254.84 - absdiff 1326.40 percdiff 33.8536 tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 387745 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 3344 erate 0.0123 score 3302.87 - absdiff 1278.36 percdiff 32.4289 tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 499212 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 4389 erate 0.0075 score 4356.08 - absdiff 225.15 percdiff 5.0384 tig 7222 read 358362 pos 4645-21796 NOT confused by 3' edge to read 509669 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 1908 erate 0.0169 score 1875.75 - absdiff 2705.48 percdiff 83.8000 tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 538415 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 4474 erate 0.0108 score 4425.68 - absdiff 155.55 percdiff 3.4540 tig 7222 read 358362 pos 4645-21796 NOT confused by 3' edge to read 623263 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 2171 erate 0.0617 score 2037.05 - absdiff 2544.18 percdiff 76.8835 tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 637126 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 4548 erate 0.0053 score 4523.90 - absdiff 57.34 percdiff 1.2594 tig 7222 read 358362 pos 4645-21796 NOT confused by 3' edge to read 670429 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 1042 erate 0.0519 score 987.92 - absdiff 3593.31 percdiff 129.0434 tig 7222 read 358362 pos 4645-21796 IS confused by 3' edge to read 678430 - best edge read 109504 len 4853 erate 0.0560 score 4581.23 - alt edge len 2570 erate 0.0203 score 2517.83 - absdiff 2063.40 percdiff 58.1317 saved region 4248:9595 - 7 best edges are potentially confused break tig 7222 into up to 3 pieces: 0 3748 unique (length 3748) 3748 10095 repeat (length 6347) 10095 23805 unique (length 13710) Creating Unitig 113866 Creating Unitig 113867 Creating Unitig 113868 For tig 7222 unique region 0 3748 - 0/ 7 reads repeat/unique - unitig 113866 created. For tig 7222 repeat region 3748 10095 - 5/ 0 reads repeat/unique - unitig 113867 created. For tig 7222 unique region 10095 23805 - 0/ 34 reads repeat/unique - unitig 113868 created. Annotating repeats in reads for tig 7224/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7225/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7230/113047. Annotated with 151 overlaps. Scan reads to discard spanned repeats. discard region 230:1373 - contained in read 35570 0- 5532 thickest edges to the repeat regions: saved region 1629:6237 - closest 5' read 474296 ( +5) 1624:5848 ( -389) saved region 1629:6237 - closest 3' read 698351 ( -431) 2060:8233 ( +1996) search for confused edges: tig 7230 read 663547 pos 76-5829 IS confused by 5' edge to read 122819 - best edge read 698352 len 3714 erate 0.0667 score 3466.28 - alt edge len 2229 erate 0.0522 score 2112.65 - absdiff 1353.63 percdiff 48.5266 tig 7230 read 663547 pos 76-5829 IS confused by 5' edge to read 179052 - best edge read 698352 len 3714 erate 0.0667 score 3466.28 - alt edge len 2595 erate 0.0545 score 2453.57 - absdiff 1012.70 percdiff 34.2138 tig 7230 read 663547 pos 76-5829 NOT confused by 5' edge to read 576330 - best edge read 698352 len 3714 erate 0.0667 score 3466.28 - alt edge len 1458 erate 0.0675 score 1359.59 - absdiff 2106.69 percdiff 87.3084 tig 7230 read 663547 pos 76-5829 IS confused by 5' edge to read 576331 - best edge read 698352 len 3714 erate 0.0667 score 3466.28 - alt edge len 1474 erate 0.0636 score 1380.25 - absdiff 2086.02 percdiff 86.0831 tig 7230 read 663547 pos 76-5829 IS confused by 5' edge to read 619136 - best edge read 698352 len 3714 erate 0.0667 score 3466.28 - alt edge len 2314 erate 0.0659 score 2161.51 - absdiff 1304.77 percdiff 46.3688 saved region 1629:6237 - 4 best edges are potentially confused break tig 7230 into up to 3 pieces: 0 1129 unique (length 1129) 1129 6737 repeat (length 5608) 6737 10939 unique (length 4202) Creating Unitig 113869 Creating Unitig 113870 Creating Unitig 113871 For tig 7230 unique region 0 1129 - 0/ 6 reads repeat/unique - unitig 113869 created. For tig 7230 repeat region 1129 6737 - 6/ 0 reads repeat/unique - unitig 113870 created. For tig 7230 unique region 6737 10939 - 0/ 8 reads repeat/unique - unitig 113871 created. Annotating repeats in reads for tig 7234/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 7365:8557 - contained in read 531249 5558- 12571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7240/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4249:6396 - contained in read 38509 0- 7610 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7254/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7256/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7115:6495 - contained in read 42550 0- 7085 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7259/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7266/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 8840:10337 - contained in read 309499 7070- 17116 discard region 14524:16376 - contained in read 309499 7070- 17116 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7269/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7270/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7274/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6758:8977 - contained in read 462162 3459- 8977 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7277/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7279/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4214:3473 - contained in read 48533 0- 5693 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7284/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 10662:11687 - contained in read 278761 8151- 11687 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7285/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6621:5949 - contained in read 49580 0- 6623 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7286/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7287/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7288/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5550:6194 - closest read 453578 ( +5539) 11:6548 ( +354) (contained) saved region 5550:6194 - closest read 432633 ( +0) 5550:8531 ( +2337) (contained) saved region 5550:6194 - closest 5' read 432633 ( +0) 5550:8531 ( +2337) saved region 5550:6194 - closest 3' read 453578 ( +5539) 11:6548 ( +354) search for confused edges: discard region 5550:6194 - no confusion in best edges Annotating repeats in reads for tig 7290/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5624:6448 - contained in read 68567 399- 11444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7293/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2267:7833 - closest read 380189 ( +0) 2267:8764 ( +931) (contained) saved region 2267:7833 - closest 5' read 380189 ( +0) 2267:8764 ( +931) saved region 2267:7833 - closest 3' read 380189 ( +0) 2267:8764 ( +931) search for confused edges: tig 7293 read 666814 pos 806-7455 NOT confused by 5' edge to read 92367 - best edge read 380189 len 5114 erate 0.0708 score 4751.93 - alt edge len 2671 erate 0.0232 score 2609.03 - absdiff 2142.90 percdiff 58.2233 tig 7293 read 666814 pos 806-7455 IS confused by 5' edge to read 154192 - best edge read 380189 len 5114 erate 0.0708 score 4751.93 - alt edge len 3967 erate 0.0043 score 3949.94 - absdiff 801.99 percdiff 18.4325 tig 7293 read 666814 pos 806-7455 IS confused by 5' edge to read 185747 - best edge read 380189 len 5114 erate 0.0708 score 4751.93 - alt edge len 4295 erate 0.0063 score 4267.94 - absdiff 483.99 percdiff 10.7316 tig 7293 read 666814 pos 806-7455 IS confused by 5' edge to read 305356 - best edge read 380189 len 5114 erate 0.0708 score 4751.93 - alt edge len 4995 erate 0.0658 score 4666.33 - absdiff 85.60 percdiff 1.8177 tig 7293 read 666814 pos 806-7455 IS confused by 5' edge to read 654598 - best edge read 380189 len 5114 erate 0.0708 score 4751.93 - alt edge len 3810 erate 0.0037 score 3795.90 - absdiff 956.03 percdiff 22.3688 saved region 2267:7833 - 4 best edges are potentially confused break tig 7293 into up to 3 pieces: 0 1767 unique (length 1767) 1767 8333 repeat (length 6566) 8333 11388 unique (length 3055) Creating Unitig 113872 Creating Unitig 113873 Creating Unitig 113874 For tig 7293 unique region 0 1767 - 0/ 9 reads repeat/unique - unitig 113872 created. For tig 7293 repeat region 1767 8333 - 9/ 0 reads repeat/unique - unitig 113874 created. For tig 7293 unique region 8333 11388 - 0/ 4 reads repeat/unique - unitig 113873 created. Annotating repeats in reads for tig 7295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7296/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7305/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7306/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 946:3615 - contained in read 526203 0- 16067 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7307/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 8799:10064 - contained in read 535736 7564- 14870 discard region 14582:15239 - contained in read 437554 7955- 16390 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7311/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3585:7720 - contained in read 345695 406- 10101 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7319/113047. Annotated with 423 overlaps. Scan reads to discard spanned repeats. discard region 0:5209 - contained in read 565245 0- 9123 discard region 5336:10706 - contained in read 58734 4143- 10706 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7320/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 8609:11301 - contained in read 655411 3024- 12340 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7321/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7322/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1382:3549 - contained in read 567615 0- 5225 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7323/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3636:5807 - contained in read 577948 19- 7311 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7326/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 910:4094 - contained in read 457930 0- 6314 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7329/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 4588:5325 - contained in read 59627 0- 6254 discard region 6254:5428 - contained in read 59627 0- 6254 discard region 8632:10117 - contained in read 657837 4588- 10962 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7331/113047. Annotated with 104 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7309:15090 - closest 5' read 378488 ( +7286) 23:13820 ( -1270) saved region 7309:15090 - closest 3' read 134417 ( -259) 7568:16870 ( +1780) search for confused edges: tig 7331 read 134417 pos 7568-16870 IS confused by 5' edge to read 529847 - best edge read 378488 len 6199 erate 0.0636 score 5804.74 - alt edge len 6151 erate 0.0668 score 5740.11 - absdiff 64.63 percdiff 1.1196 tig 7331 read 134417 pos 7568-16870 IS confused by 5' edge to read 706348 - best edge read 378488 len 6199 erate 0.0636 score 5804.74 - alt edge len 5904 erate 0.0693 score 5494.85 - absdiff 309.89 percdiff 5.4850 saved region 7309:15090 - 2 best edges are potentially confused break tig 7331 into up to 3 pieces: 0 6809 unique (length 6809) 6809 15590 repeat (length 8781) 15590 16999 unique (length 1409) Creating Unitig 113875 Creating Unitig 113876 Creating Unitig 113877 For tig 7331 unique region 0 6809 - 0/ 8 reads repeat/unique - unitig 113875 created. For tig 7331 repeat region 6809 15590 - 21/ 0 reads repeat/unique - unitig 113876 created. For tig 7331 unique region 15590 16999 - 0/ 8 reads repeat/unique - unitig 113877 created. Annotating repeats in reads for tig 7335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7336/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 6291:8638 - contained in read 503430 0- 10680 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7341/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7348/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7349/113047. Annotated with 95 overlaps. Scan reads to discard spanned repeats. discard region 6786:5984 - contained in read 70585 0- 7899 discard region 14095:20487 - contained in read 64216 10890- 21568 thickest edges to the repeat regions: saved region 8236:12157 - closest 5' read 298124 ( +4083) 4153:12115 ( -42) saved region 8236:12157 - closest 3' read 271975 ( -961) 9197:19420 ( +7263) search for confused edges: tig 7349 read 64216 pos 10890-21568 IS confused by 5' edge to read 147873 - best edge read 298124 len 1216 erate 0.0423 score 1164.56 - alt edge len 621 erate 0.0405 score 595.85 - absdiff 568.71 percdiff 64.6114 tig 7349 read 64216 pos 10890-21568 IS confused by 5' edge to read 156515 - best edge read 298124 len 1216 erate 0.0423 score 1164.56 - alt edge len 1184 erate 0.0418 score 1134.51 - absdiff 30.05 percdiff 2.6145 tig 7349 read 64216 pos 10890-21568 IS confused by 5' edge to read 248799 - best edge read 298124 len 1216 erate 0.0423 score 1164.56 - alt edge len 950 erate 0.0544 score 898.32 - absdiff 266.24 percdiff 25.8127 tig 7349 read 64216 pos 10890-21568 IS confused by 5' edge to read 280009 - best edge read 298124 len 1216 erate 0.0423 score 1164.56 - alt edge len 1048 erate 0.0531 score 992.35 - absdiff 172.21 percdiff 15.9684 tig 7349 read 64216 pos 10890-21568 IS confused by 5' edge to read 295314 - best edge read 298124 len 1216 erate 0.0423 score 1164.56 - alt edge len 1190 erate 0.0603 score 1118.24 - absdiff 46.32 percdiff 4.0582 saved region 8236:12157 - 5 best edges are potentially confused break tig 7349 into up to 3 pieces: 0 7736 unique (length 7736) 7736 12657 repeat (length 4921) 12657 21569 unique (length 8912) Creating Unitig 113878 Creating Unitig 113879 Creating Unitig 113880 For tig 7349 unique region 0 7736 - 0/ 15 reads repeat/unique - unitig 113878 created. For tig 7349 repeat region 7736 12657 - 2/ 0 reads repeat/unique - unitig 113880 created. For tig 7349 unique region 12657 21569 - 0/ 60 reads repeat/unique - unitig 113879 created. Annotating repeats in reads for tig 7350/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12666:11543 - contained in read 364561 7725- 12861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7351/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7352/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7354/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7356/113047. Annotated with 140 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6721:10195 - closest read 275992 ( +0) 6721:14570 ( +4375) (contained) saved region 6721:10195 - closest 5' read 275992 ( +0) 6721:14570 ( +4375) saved region 6721:10195 - closest 3' read 275992 ( +0) 6721:14570 ( +4375) search for confused edges: tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 80240 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1897 erate 0.0569 score 1789.06 - absdiff 869.90 percdiff 39.1142 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 111559 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2743 erate 0.0573 score 2585.83 - absdiff 73.14 percdiff 2.7890 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 111560 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2742 erate 0.0599 score 2577.75 - absdiff 81.21 percdiff 3.1016 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 131432 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1783 erate 0.0644 score 1668.17 - absdiff 990.79 percdiff 45.7942 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 136177 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1734 erate 0.0675 score 1616.95 - absdiff 1042.01 percdiff 48.7385 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 136180 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1737 erate 0.0622 score 1628.96 - absdiff 1030.01 percdiff 48.0422 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 147493 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2686 erate 0.0711 score 2495.03 - absdiff 163.94 percdiff 6.3616 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 156918 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2229 erate 0.0592 score 2097.04 - absdiff 561.92 percdiff 23.6300 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 170955 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1642 erate 0.0631 score 1538.39 - absdiff 1120.57 percdiff 53.3943 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 170956 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1680 erate 0.0653 score 1570.30 - absdiff 1088.67 percdiff 51.4827 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 223692 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1647 erate 0.0741 score 1524.96 - absdiff 1134.01 percdiff 54.2079 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 338612 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2744 erate 0.0569 score 2587.87 - absdiff 71.10 percdiff 2.7101 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 458816 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1242 erate 0.0564 score 1171.95 - absdiff 1487.01 percdiff 77.6323 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 458823 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1240 erate 0.0540 score 1173.04 - absdiff 1485.92 percdiff 77.5534 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 494035 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2344 erate 0.0491 score 2228.91 - absdiff 430.06 percdiff 17.5968 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 663918 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1556 erate 0.0617 score 1459.99 - absdiff 1198.97 percdiff 58.2171 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 683674 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2815 erate 0.0569 score 2654.83 - absdiff 4.14 percdiff 0.1558 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 707061 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 1810 erate 0.0381 score 1741.04 - absdiff 917.93 percdiff 41.7239 tig 7356 read 623624 pos 2336-9584 IS confused by 3' edge to read 707598 - best edge read 275992 len 2832 erate 0.0611 score 2658.96 - alt edge len 2752 erate 0.0491 score 2616.88 - absdiff 42.09 percdiff 1.5955 saved region 6721:10195 - 19 best edges are potentially confused break tig 7356 into up to 3 pieces: 0 6221 unique (length 6221) 6221 10695 repeat (length 4474) 10695 15432 unique (length 4737) Creating Unitig 113881 Creating Unitig 113882 Creating Unitig 113883 For tig 7356 unique region 0 6221 - 0/ 10 reads repeat/unique - unitig 113881 created. For tig 7356 repeat region 6221 10695 - 7/ 0 reads repeat/unique - unitig 113883 created. For tig 7356 unique region 10695 15432 - 0/ 4 reads repeat/unique - unitig 113882 created. Annotating repeats in reads for tig 7360/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9460:10120 - contained in read 177246 134- 14476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7366/113047. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 1267:8428 - contained in read 701999 0- 9927 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7368/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1658:4406 - contained in read 479374 0- 9357 discard region 4669:7509 - contained in read 479374 0- 9357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7377/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:1513 - contained in read 284927 0- 4986 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7381/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6406:9188 - contained in read 688470 2742- 9210 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7382/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7385/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 2627:4294 - contained in read 253424 1137- 7746 discard region 5747:7746 - contained in read 253424 1137- 7746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7386/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7388/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 14575:15738 - contained in read 439587 7800- 15738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7391/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7393/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7395/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1772:7075 - contained in read 591893 773- 7075 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7397/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11432:13234 - contained in read 335947 7202- 15067 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7404/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7739:15189 - closest 5' read 122783 ( +0) 7739:14804 ( -385) saved region 7739:15189 - closest 3' read 80221 ( -3094) 10833:16299 ( +1110) search for confused edges: tig 7404 read 334386 pos 5738-11987 IS confused by 5' edge to read 295107 - best edge read 80220 len 1151 erate 0.0148 score 1133.97 - alt edge len 822 erate 0.0135 score 810.90 - absdiff 323.06 percdiff 33.2220 tig 7404 read 80220 pos 10835-16301 IS confused by 3' edge to read 385150 - best edge read 334386 len 1146 erate 0.0148 score 1129.04 - alt edge len 982 erate 0.0311 score 951.46 - absdiff 177.58 percdiff 17.0708 saved region 7739:15189 - 2 best edges are potentially confused break tig 7404 into up to 3 pieces: 0 7239 unique (length 7239) 7239 15689 repeat (length 8450) 15689 16321 unique (length 632) Creating Unitig 113884 Creating Unitig 113885 Creating Unitig 113886 For tig 7404 unique region 0 7239 - 0/ 7 reads repeat/unique - unitig 113884 created. For tig 7404 repeat region 7239 15689 - 4/ 0 reads repeat/unique - unitig 113885 created. For tig 7404 unique region 15689 16321 - 0/ 5 reads repeat/unique - unitig 113886 created. Annotating repeats in reads for tig 7408/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1656:1075 - contained in read 80578 0- 2925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7414/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7415/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:3090 - contained in read 590515 0- 6814 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7420/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 16123:17591 - contained in read 710283 7625- 17591 thickest edges to the repeat regions: saved region 5098:6858 - closest read 250829 ( +64) 5034:14695 ( +7837) (contained) saved region 5098:6858 - closest read 250828 ( +55) 5043:14766 ( +7908) (contained) saved region 5098:6858 - closest read 250830 ( +52) 5046:14339 ( +7481) (contained) saved region 5098:6858 - closest read 272935 ( +0) 5098:15261 ( +8403) (contained) saved region 5098:6858 - closest 5' read 272935 ( +0) 5098:15261 ( +8403) saved region 5098:6858 - closest 3' read 250829 ( +64) 5034:14695 ( +7837) search for confused edges: discard region 5098:6858 - no confusion in best edges Annotating repeats in reads for tig 7422/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7428/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13139:10987 - contained in read 494094 4219- 12410 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7431/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7434/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5827:7151 - contained in read 87958 0- 7812 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7435/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7436/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1240:2429 - contained in read 430115 0- 4126 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7438/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7448/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2889:6137 - contained in read 227522 1010- 7514 discard region 6099:7535 - contained in read 185737 4481- 13286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7450/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6805:6106 - contained in read 22936 323- 6805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7451/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6615:5421 - contained in read 467264 245- 6597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7456/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7465/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7467/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7470/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7472/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7473/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5478:6673 - contained in read 592769 4187- 9541 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7476/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2464:6249 - contained in read 96184 12- 6249 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7477/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 12093:13598 - contained in read 367559 5698- 14662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7480/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3401:4495 - closest read 47005 ( +3062) 339:4503 ( +8) (contained) saved region 3401:4495 - closest read 500056 ( +0) 3401:8583 ( +4088) (contained) saved region 3401:4495 - closest 5' read 500056 ( +0) 3401:8583 ( +4088) saved region 3401:4495 - closest 3' read 47005 ( +3062) 339:4503 ( +8) search for confused edges: discard region 3401:4495 - no confusion in best edges Annotating repeats in reads for tig 7483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7489/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 10071:10943 - contained in read 23598 7880- 12593 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7491/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7496/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 8255:9005 - contained in read 708354 98- 11726 discard region 9984:10806 - contained in read 708354 98- 11726 discard region 12586:20011 - contained in read 246824 9928- 20011 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7497/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 11954:13364 - contained in read 257299 8852- 14707 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7498/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 9710:11193 - contained in read 25459 5102- 11193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7528/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6302:8246 - contained in read 221026 421- 10468 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7531/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7534/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7540/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7542/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7553/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7561/113047. Annotated with 62 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3875:7943 - closest 5' read 635060 ( +0) 3875:7180 ( -763) saved region 3875:7943 - closest 3' read 621146 ( -202) 4077:9688 ( +1745) search for confused edges: tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 54028 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 2154 erate 0.0425 score 2062.45 - absdiff 730.95 percdiff 30.1061 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 143902 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 2546 erate 0.0454 score 2430.41 - absdiff 363.00 percdiff 13.8978 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 459953 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 1811 erate 0.0415 score 1735.84 - absdiff 1057.57 percdiff 46.6994 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 654830 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 999 erate 0.0355 score 963.54 - absdiff 1829.87 percdiff 97.4129 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 654832 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 1001 erate 0.0345 score 966.47 - absdiff 1826.94 percdiff 97.1811 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 668731 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 1080 erate 0.0503 score 1025.68 - absdiff 1767.73 percdiff 92.5737 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 668733 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 1124 erate 0.0611 score 1055.32 - absdiff 1738.09 percdiff 90.3199 tig 7561 read 116124 pos 0-6929 IS confused by 3' edge to read 691622 - best edge read 621146 len 2851 erate 0.0202 score 2793.41 - alt edge len 1813 erate 0.0454 score 1730.69 - absdiff 1062.72 percdiff 46.9804 saved region 3875:7943 - 8 best edges are potentially confused break tig 7561 into up to 3 pieces: 0 3375 unique (length 3375) 3375 8443 repeat (length 5068) 8443 10293 unique (length 1850) Creating Unitig 113887 Creating Unitig 113888 Creating Unitig 113889 For tig 7561 unique region 0 3375 - 0/ 2 reads repeat/unique - unitig 113887 created. For tig 7561 repeat region 3375 8443 - 3/ 0 reads repeat/unique - unitig 113888 created. For tig 7561 unique region 8443 10293 - 0/ 9 reads repeat/unique - unitig 113889 created. Annotating repeats in reads for tig 7562/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 788:3057 - contained in read 410990 0- 7569 thickest edges to the repeat regions: saved region 9830:12029 - closest read 681328 ( +4386) 5444:12088 ( +59) (contained) saved region 9830:12029 - closest read 627730 ( +1331) 8499:12143 ( +114) (contained) saved region 9830:12029 - closest read 373796 ( +6) 9824:12961 ( +932) (contained) saved region 9830:12029 - closest read 116200 ( +4) 9826:13936 ( +1907) (contained) saved region 9830:12029 - closest 5' read 116200 ( +4) 9826:13936 ( +1907) saved region 9830:12029 - closest 3' read 681328 ( +4386) 5444:12088 ( +59) search for confused edges: discard region 9830:12029 - no confusion in best edges Annotating repeats in reads for tig 7564/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 0:1804 - contained in read 70990 0- 7728 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7567/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8628:7825 - contained in read 207780 1594- 11111 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7569/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7571/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7572/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7576/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7577/113047. Annotated with 79 overlaps. Scan reads to discard spanned repeats. discard region 13449:15964 - contained in read 318495 8089- 18804 discard region 16047:19103 - contained in read 218877 8151- 19499 thickest edges to the repeat regions: saved region 6656:13348 - closest 5' read 368480 ( +3740) 2916:9905 ( -3443) saved region 6656:13348 - closest 3' read 318495 ( -1433) 8089:18804 ( +5456) search for confused edges: tig 7577 read 368479 pos 2923-9883 IS confused by 3' edge to read 249391 - best edge read 218877 len 1606 erate 0.0543 score 1518.79 - alt edge len 1562 erate 0.0251 score 1522.79 - absdiff 4.00 percdiff 0.2630 saved region 6656:13348 - 1 best edges are potentially confused break tig 7577 into up to 3 pieces: 0 6156 unique (length 6156) 6156 13848 repeat (length 7692) 13848 19499 unique (length 5651) Creating Unitig 113890 Creating Unitig 113891 Creating Unitig 113892 For tig 7577 unique region 0 6156 - 0/ 8 reads repeat/unique - unitig 113890 created. For tig 7577 repeat region 6156 13848 - 7/ 0 reads repeat/unique - unitig 113891 created. For tig 7577 unique region 13848 19499 - 0/ 21 reads repeat/unique - unitig 113892 created. Annotating repeats in reads for tig 7580/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6593:11702 - contained in read 235698 0- 12297 discard region 12007:12894 - contained in read 617634 2335- 17825 thickest edges to the repeat regions: saved region 21529:24890 - closest read 119583 ( +2412) 19117:25114 ( +224) (contained) saved region 21529:24890 - closest read 119584 ( +0) 21529:25115 ( +225) (contained) saved region 21529:24890 - closest 5' read 119584 ( +0) 21529:25115 ( +225) saved region 21529:24890 - closest 3' read 119583 ( +2412) 19117:25114 ( +224) search for confused edges: discard region 21529:24890 - no confusion in best edges Annotating repeats in reads for tig 7583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7586/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3306:5225 - contained in read 68381 4- 6412 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7592/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7596/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7600/113047. Annotated with 93 overlaps. Scan reads to discard spanned repeats. discard region 4626:9669 - contained in read 96727 4025- 14013 discard region 11216:12948 - contained in read 96727 4025- 14013 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7602/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 5996:7155 - contained in read 125044 0- 10172 discard region 10192:14656 - contained in read 53627 9272- 15838 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7603/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 6944:9012 - contained in read 647964 2730- 9012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7605/113047. Annotated with 222 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:15228 - closest 5' read 208254 ( +0) 0:8025 ( -7203) saved region 0:15228 - closest 3' read 426783 ( -1066) 1066:15968 ( +740) search for confused edges: tig 7605 read 426783 pos 1066-15968 NOT confused by 5' edge to read 417535 - best edge read 267937 len 11342 erate 0.0235 score 11075.46 - alt edge len 892 erate 0.0564 score 841.69 - absdiff 10233.77 percdiff 171.7486 tig 7605 read 267937 pos 1433-14058 NOT confused by 5' edge to read 584659 - best edge read 125715 len 11479 erate 0.0134 score 11325.18 - alt edge len 4327 erate 0.0352 score 4174.69 - absdiff 7150.49 percdiff 92.2652 tig 7605 read 267937 pos 1433-14058 NOT confused by 5' edge to read 584660 - best edge read 125715 len 11479 erate 0.0134 score 11325.18 - alt edge len 4316 erate 0.0466 score 4114.87 - absdiff 7210.31 percdiff 93.3974 tig 7605 read 267937 pos 1433-14058 NOT confused by 5' edge to read 639487 - best edge read 125715 len 11479 erate 0.0134 score 11325.18 - alt edge len 985 erate 0.0490 score 936.74 - absdiff 10388.45 percdiff 169.4425 tig 7605 read 125715 pos 2344-14418 NOT confused by 5' edge to read 417535 - best edge read 267937 len 11454 erate 0.0134 score 11300.52 - alt edge len 945 erate 0.0510 score 896.80 - absdiff 10403.71 percdiff 170.5901 tig 7605 read 125715 pos 2344-14418 NOT confused by 3' edge to read 584659 - best edge read 426783 len 9089 erate 0.0229 score 8880.86 - alt edge len 4871 erate 0.0388 score 4682.01 - absdiff 4198.86 percdiff 61.9169 tig 7605 read 125715 pos 2344-14418 NOT confused by 3' edge to read 584660 - best edge read 426783 len 9089 erate 0.0229 score 8880.86 - alt edge len 4860 erate 0.0488 score 4622.83 - absdiff 4258.03 percdiff 63.0647 tig 7605 read 125715 pos 2344-14418 NOT confused by 3' edge to read 639487 - best edge read 426783 len 9089 erate 0.0229 score 8880.86 - alt edge len 1538 erate 0.0476 score 1464.79 - absdiff 7416.07 percdiff 143.3659 discard region 0:15228 - no confusion in best edges Annotating repeats in reads for tig 7606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7607/113047. Annotated with 161 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8194:16818 - closest 5' read 124202 ( +4546) 3648:14258 ( -2560) saved region 8194:16818 - closest 3' read 639681 ( -120) 8314:16818 ( +0) search for confused edges: tig 7607 read 158334 pos 1980-11956 IS confused by 3' edge to read 705637 - best edge read 639681 len 3620 erate 0.0736 score 3353.57 - alt edge len 3618 erate 0.0692 score 3367.63 - absdiff 14.07 percdiff 0.4186 saved region 8194:16818 - 1 best edges are potentially confused break tig 7607 into up to 2 pieces: 0 7694 unique (length 7694) 7694 16818 repeat (length 9124) Creating Unitig 113893 Creating Unitig 113894 For tig 7607 unique region 0 7694 - 0/ 12 reads repeat/unique - unitig 113893 created. For tig 7607 repeat region 7694 16818 - 16/ 0 reads repeat/unique - unitig 113894 created. Annotating repeats in reads for tig 7608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7610/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7612/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10836:12256 - closest read 554061 ( +0) 10836:16393 ( +4137) (contained) saved region 10836:12256 - closest 5' read 554061 ( +0) 10836:16393 ( +4137) saved region 10836:12256 - closest 3' read 554061 ( +0) 10836:16393 ( +4137) search for confused edges: tig 7612 read 309443 pos 1954-11743 IS confused by 3' edge to read 80071 - best edge read 554062 len 903 erate 0.0722 score 837.80 - alt edge len 719 erate 0.0515 score 681.97 - absdiff 155.83 percdiff 20.5072 tig 7612 read 309443 pos 1954-11743 IS confused by 3' edge to read 80072 - best edge read 554062 len 903 erate 0.0722 score 837.80 - alt edge len 717 erate 0.0572 score 675.99 - absdiff 161.82 percdiff 21.3789 tig 7612 read 309443 pos 1954-11743 IS confused by 3' edge to read 155101 - best edge read 554062 len 903 erate 0.0722 score 837.80 - alt edge len 755 erate 0.0495 score 717.63 - absdiff 120.18 percdiff 15.4524 tig 7612 read 309443 pos 1954-11743 IS confused by 3' edge to read 196998 - best edge read 554062 len 903 erate 0.0722 score 837.80 - alt edge len 673 erate 0.0435 score 643.72 - absdiff 194.08 percdiff 26.1998 tig 7612 read 309443 pos 1954-11743 IS confused by 3' edge to read 501751 - best edge read 554062 len 903 erate 0.0722 score 837.80 - alt edge len 875 erate 0.0481 score 832.91 - absdiff 4.89 percdiff 0.5855 saved region 10836:12256 - 5 best edges are potentially confused break tig 7612 into up to 3 pieces: 0 10336 unique (length 10336) 10336 12756 repeat (length 2420) 12756 18002 unique (length 5246) Creating Unitig 113895 Creating Unitig 113896 Creating Unitig 113897 For tig 7612 unique region 0 10336 - 0/ 16 reads repeat/unique - unitig 113895 created. For tig 7612 repeat region 10336 12756 - 2/ 0 reads repeat/unique - unitig 113897 created. For tig 7612 unique region 12756 18002 - 0/ 2 reads repeat/unique - unitig 113896 created. Annotating repeats in reads for tig 7613/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7527:6779 - contained in read 127461 0- 7523 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7615/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 9019:11137 - contained in read 192094 6816- 13502 thickest edges to the repeat regions: saved region 6606:7861 - closest read 446979 ( +1317) 5289:7861 ( +0) (contained) saved region 6606:7861 - closest read 640587 ( +1006) 5600:7894 ( +33) (contained) saved region 6606:7861 - closest 5' read 640587 ( +1006) 5600:7894 ( +33) saved region 6606:7861 - closest 3' read 446979 ( +1317) 5289:7861 ( +0) search for confused edges: discard region 6606:7861 - no confusion in best edges Annotating repeats in reads for tig 7616/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12757:16909 - closest 5' read 699033 ( +0) 12757:16857 ( -52) saved region 12757:16909 - closest 3' read 453638 ( -1289) 14046:18466 ( +1557) search for confused edges: discard region 12757:16909 - no confusion in best edges Annotating repeats in reads for tig 7617/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5321:8350 - contained in read 645911 3019- 11094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7629/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 18832:20393 - contained in read 691418 15836- 23024 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7630/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 0:3647 - contained in read 224425 0- 8810 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7634/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:4001 - contained in read 134007 0- 6097 thickest edges to the repeat regions: saved region 6709:13184 - closest 5' read 369050 ( +2298) 4411:11453 ( -1731) saved region 6709:13184 - closest 3' read 166411 ( -810) 7519:15435 ( +2251) search for confused edges: discard region 6709:13184 - no confusion in best edges Annotating repeats in reads for tig 7635/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7642/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9176:10740 - closest read 424106 ( +0) 9176:14583 ( +3843) (contained) saved region 9176:10740 - closest 5' read 424106 ( +0) 9176:14583 ( +3843) saved region 9176:10740 - closest 3' read 424106 ( +0) 9176:14583 ( +3843) search for confused edges: discard region 9176:10740 - no confusion in best edges Annotating repeats in reads for tig 7644/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4239:5632 - contained in read 136343 0- 6795 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7645/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7650/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7652/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7661/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12397:11459 - contained in read 172555 6857- 12397 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7666/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6829:8266 - contained in read 590620 1788- 8821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7668/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7674/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7675/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7678/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7700/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7706/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2183:6071 - contained in read 154963 7- 7076 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7708/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7712/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1553:2064 - contained in read 422911 0- 3970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7731/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7741/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7745/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5059:6238 - contained in read 590898 3128- 9002 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7746/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3375:4194 - contained in read 165394 0- 6047 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7747/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12646:13781 - closest read 110110 ( +0) 12646:18982 ( +5201) (contained) saved region 12646:13781 - closest 5' read 110110 ( +0) 12646:18982 ( +5201) saved region 12646:13781 - closest 3' read 110110 ( +0) 12646:18982 ( +5201) search for confused edges: discard region 12646:13781 - no confusion in best edges Annotating repeats in reads for tig 7749/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3743:4653 - contained in read 166469 10- 7019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7753/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7758/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7761/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7764/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7765/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7767/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7776/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7782/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 3425:7317 - contained in read 692706 2736- 9959 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7792/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7795/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 7159:8490 - contained in read 407224 4813- 9308 thickest edges to the repeat regions: saved region 4382:7128 - closest 5' read 402939 ( +486) 3896:6065 ( -1063) saved region 4382:7128 - closest 3' read 238175 ( -32) 4414:7128 ( +0) search for confused edges: discard region 4382:7128 - no confusion in best edges Annotating repeats in reads for tig 7798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7802/113047. Annotated with 250 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8232:12543 - closest read 711796 ( +0) 8232:14672 ( +2129) (contained) saved region 8232:12543 - closest 5' read 711796 ( +0) 8232:14672 ( +2129) saved region 8232:12543 - closest 3' read 711796 ( +0) 8232:14672 ( +2129) search for confused edges: tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 101733 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 987 erate 0.0478 score 939.82 - absdiff 1056.62 percdiff 71.9702 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 107604 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 668 erate 0.0345 score 644.95 - absdiff 1351.48 percdiff 102.3312 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 112635 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 1063 erate 0.0660 score 992.84 - absdiff 1003.60 percdiff 67.1463 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 471522 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 950 erate 0.0348 score 916.94 - absdiff 1079.50 percdiff 74.1063 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 471524 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 954 erate 0.0326 score 922.90 - absdiff 1073.54 percdiff 73.5467 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 490446 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 746 erate 0.0549 score 705.04 - absdiff 1291.39 percdiff 95.6063 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 521305 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 1088 erate 0.0350 score 1049.92 - absdiff 946.52 percdiff 62.1409 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 521308 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 1087 erate 0.0315 score 1052.76 - absdiff 943.68 percdiff 61.8968 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 707182 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 1776 erate 0.0690 score 1653.46 - absdiff 342.98 percdiff 18.7941 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 707183 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 1774 erate 0.0696 score 1650.53 - absdiff 345.91 percdiff 18.9696 tig 7802 read 379201 pos 3497-10430 IS confused by 5' edge to read 707185 - best edge read 711796 len 2125 erate 0.0605 score 1996.44 - alt edge len 1772 erate 0.0708 score 1646.54 - absdiff 349.90 percdiff 19.2093 saved region 8232:12543 - 11 best edges are potentially confused break tig 7802 into up to 3 pieces: 0 7732 unique (length 7732) 7732 13043 repeat (length 5311) 13043 14682 unique (length 1639) Creating Unitig 113898 Creating Unitig 113899 Creating Unitig 113900 For tig 7802 unique region 0 7732 - 0/ 12 reads repeat/unique - unitig 113898 created. For tig 7802 repeat region 7732 13043 - 19/ 0 reads repeat/unique - unitig 113900 created. For tig 7802 unique region 13043 14682 - 0/ 2 reads repeat/unique - unitig 113899 created. Annotating repeats in reads for tig 7804/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7809/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4581:9055 - contained in read 103290 201- 10293 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7828/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6534:7334 - contained in read 247541 454- 7867 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7836/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10499:11641 - contained in read 558036 7752- 13329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7854/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9284:10374 - contained in read 238908 5932- 12065 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7860/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 1497:3016 - contained in read 262100 0- 7364 thickest edges to the repeat regions: saved region 3563:11938 - closest read 200338 ( +396) 3167:13410 ( +1472) (contained) saved region 3563:11938 - closest 5' read 200338 ( +396) 3167:13410 ( +1472) saved region 3563:11938 - closest 3' read 200338 ( +396) 3167:13410 ( +1472) search for confused edges: discard region 3563:11938 - no confusion in best edges Annotating repeats in reads for tig 7861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7868/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 9648:11065 - contained in read 298848 7034- 13120 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7871/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3874:4889 - contained in read 101209 1230- 7761 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7872/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7875/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 14544:13714 - contained in read 181255 7972- 15441 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7878/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7880/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7881/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:2091 - contained in read 152494 0- 5572 discard region 4932:4212 - contained in read 152494 0- 5572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7882/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4948:4365 - contained in read 664761 0- 7536 discard region 5604:7694 - contained in read 359813 3668- 9609 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7885/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 8763:11124 - contained in read 24549 1630- 11124 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7887/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7895/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5194:5874 - closest read 209149 ( +5194) 0:6174 ( +300) (contained) saved region 5194:5874 - closest read 209151 ( +5191) 3:6167 ( +293) (contained) saved region 5194:5874 - closest read 209150 ( +4983) 211:6172 ( +298) (contained) saved region 5194:5874 - closest read 631735 ( +0) 5194:11006 ( +5132) (contained) saved region 5194:5874 - closest 5' read 631735 ( +0) 5194:11006 ( +5132) saved region 5194:5874 - closest 3' read 209149 ( +5194) 0:6174 ( +300) saved region 10334:11013 - closest read 631738 ( +5137) 5197:11013 ( +0) (contained) saved region 10334:11013 - closest read 411336 ( +51) 10283:15920 ( +4907) (contained) saved region 10334:11013 - closest read 411337 ( +50) 10284:15905 ( +4892) (contained) saved region 10334:11013 - closest read 361622 ( +0) 10334:17137 ( +6124) (contained) saved region 10334:11013 - closest read 215733 ( +0) 10334:14859 ( +3846) (contained) saved region 10334:11013 - closest 5' read 361622 ( +0) 10334:17137 ( +6124) saved region 10334:11013 - closest 3' read 631738 ( +5137) 5197:11013 ( +0) search for confused edges: discard region 5194:5874 - no confusion in best edges discard region 10334:11013 - no confusion in best edges Annotating repeats in reads for tig 7896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7897/113047. Annotated with 193 overlaps. Scan reads to discard spanned repeats. discard region 1012:1680 - contained in read 721726 0- 3302 discard region 2486:9590 - contained in read 226964 1012- 11785 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7903/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2767:3396 - contained in read 210353 0- 8247 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7907/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7908/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7910/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7914/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 4370:5717 - contained in read 10097 3444- 9299 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7915/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 9270:8576 - contained in read 87851 2709- 9270 thickest edges to the repeat regions: saved region 2700:8317 - closest read 521876 ( +436) 2264:8422 ( +105) (contained) saved region 2700:8317 - closest read 63496 ( +0) 2700:8607 ( +290) (contained) saved region 2700:8317 - closest 5' read 63496 ( +0) 2700:8607 ( +290) saved region 2700:8317 - closest 3' read 521876 ( +436) 2264:8422 ( +105) search for confused edges: discard region 2700:8317 - no confusion in best edges Annotating repeats in reads for tig 7924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7935/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7955/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3582:6077 - contained in read 612197 5- 6959 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7960/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1662:6967 - contained in read 226365 404- 6967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7964/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4864:8202 - contained in read 4695 0- 11169 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7979/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7989/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7996/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7998/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 10945:11754 - contained in read 261005 4985- 12582 discard region 11878:13469 - contained in read 236826 6373- 13915 thickest edges to the repeat regions: saved region 4920:5894 - closest read 20370 ( +1239) 3681:6353 ( +459) (contained) saved region 4920:5894 - closest read 293149 ( +219) 4701:6357 ( +463) (contained) saved region 4920:5894 - closest read 15361 ( +0) 4920:9864 ( +3970) (contained) saved region 4920:5894 - closest 5' read 15361 ( +0) 4920:9864 ( +3970) saved region 4920:5894 - closest 3' read 20370 ( +1239) 3681:6353 ( +459) search for confused edges: discard region 4920:5894 - no confusion in best edges Annotating repeats in reads for tig 8000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8005/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 10887:11511 - contained in read 217043 3468- 13601 discard region 17755:20407 - contained in read 536668 13828- 23796 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8019/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 2145:4567 - contained in read 482624 0- 5094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8028/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10070:10942 - contained in read 246603 7638- 10942 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8030/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3066:6421 - contained in read 525677 1486- 7602 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8031/113047. Annotated with 43 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10446:14917 - closest read 97960 ( +2096) 8350:14917 ( +0) (contained) saved region 10446:14917 - closest 5' read 97960 ( +2096) 8350:14917 ( +0) saved region 10446:14917 - closest 3' read 97960 ( +2096) 8350:14917 ( +0) search for confused edges: discard region 10446:14917 - no confusion in best edges Annotating repeats in reads for tig 8036/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1235:5803 - closest 5' read 396458 ( +52) 1183:5778 ( -25) saved region 1235:5803 - closest 3' read 468358 ( -101) 1336:8650 ( +2847) saved region 5765:8666 - closest read 468356 ( +4363) 1402:8666 ( +0) (contained) saved region 5765:8666 - closest read 176841 ( +2037) 3728:8969 ( +303) (contained) saved region 5765:8666 - closest 5' read 176841 ( +2037) 3728:8969 ( +303) saved region 5765:8666 - closest 3' read 468356 ( +4363) 1402:8666 ( +0) search for confused edges: tig 8036 read 694963 pos 0-5586 IS confused by 3' edge to read 322861 - best edge read 396458 len 4300 erate 0.0407 score 4124.99 - alt edge len 4270 erate 0.0405 score 4097.07 - absdiff 27.92 percdiff 0.6793 saved region 1235:5803 - 1 best edges are potentially confused discard region 5765:8666 - no confusion in best edges break tig 8036 into up to 3 pieces: 0 735 unique (length 735) 735 6303 repeat (length 5568) 6303 13484 unique (length 7181) Creating Unitig 113901 Creating Unitig 113902 Creating Unitig 113903 For tig 8036 unique region 0 735 - 0/ 1 reads repeat/unique - unitig 113901 created. For tig 8036 repeat region 735 6303 - 5/ 0 reads repeat/unique - unitig 113902 created. For tig 8036 unique region 6303 13484 - 0/ 13 reads repeat/unique - unitig 113903 created. Annotating repeats in reads for tig 8037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8039/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8047/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8050/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9904:10872 - contained in read 138572 2514- 11708 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8067/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9059:10167 - contained in read 333432 4593- 11506 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8073/113047. Annotated with 119 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3250:8568 - closest read 243577 ( +1865) 1385:8793 ( +225) (contained) saved region 3250:8568 - closest read 321177 ( +1034) 2216:8699 ( +131) (contained) saved region 3250:8568 - closest read 321178 ( +941) 2309:8709 ( +141) (contained) saved region 3250:8568 - closest 5' read 243577 ( +1865) 1385:8793 ( +225) saved region 3250:8568 - closest 3' read 243577 ( +1865) 1385:8793 ( +225) search for confused edges: discard region 3250:8568 - no confusion in best edges Annotating repeats in reads for tig 8074/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8080/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8084/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8115/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8118/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 1522:9209 - contained in read 613530 154- 13398 thickest edges to the repeat regions: saved region 12806:13398 - closest read 613530 (+12652) 154:13398 ( +0) (contained) saved region 12806:13398 - closest 5' read 613530 (+12652) 154:13398 ( +0) saved region 12806:13398 - closest 3' read 613530 (+12652) 154:13398 ( +0) search for confused edges: discard region 12806:13398 - no confusion in best edges Annotating repeats in reads for tig 8129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8142/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3746:5134 - contained in read 341892 0- 7537 thickest edges to the repeat regions: saved region 5978:10852 - closest read 249480 ( +5076) 902:10852 ( +0) (contained) saved region 5978:10852 - closest 5' read 249480 ( +5076) 902:10852 ( +0) saved region 5978:10852 - closest 3' read 249480 ( +5076) 902:10852 ( +0) search for confused edges: discard region 5978:10852 - no confusion in best edges Annotating repeats in reads for tig 8143/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8148/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8156/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4552:6203 - contained in read 569966 0- 7238 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8162/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8165/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8166/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8171/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8174/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5113:7914 - contained in read 661691 4087- 9779 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8177/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 18925:18269 - contained in read 431873 11223- 19595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8189/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5497:6541 - contained in read 288597 0- 7450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8190/113047. Annotated with 418 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2527:8472 - closest read 582791 ( +314) 2213:8472 ( +0) (contained) saved region 2527:8472 - closest 5' read 582791 ( +314) 2213:8472 ( +0) saved region 2527:8472 - closest 3' read 582791 ( +314) 2213:8472 ( +0) search for confused edges: discard region 2527:8472 - no confusion in best edges Annotating repeats in reads for tig 8193/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8194/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8195/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8209/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8213/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 782:2048 - contained in read 476046 0- 5917 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8214/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8223/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 6454:9486 - contained in read 679921 3985- 10302 discard region 13326:14102 - contained in read 204156 7113- 15004 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8224/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9593:10698 - contained in read 362945 2015- 12433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8233/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3015:4114 - contained in read 299735 0- 7091 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8234/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 7176:8192 - contained in read 184149 2569- 8192 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8246/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 8170:10757 - contained in read 130095 0- 13906 discard region 13702:14652 - contained in read 639365 8060- 17540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8256/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8264/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 737:4028 - closest read 623039 ( +737) 0:4028 ( +0) (contained) saved region 737:4028 - closest read 719982 ( +73) 664:11489 ( +7461) (contained) saved region 737:4028 - closest read 719981 ( +14) 723:11539 ( +7511) (contained) saved region 737:4028 - closest 5' read 719981 ( +14) 723:11539 ( +7511) saved region 737:4028 - closest 3' read 623039 ( +737) 0:4028 ( +0) search for confused edges: discard region 737:4028 - no confusion in best edges Annotating repeats in reads for tig 8265/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8266/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8268/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4539:5603 - contained in read 530894 0- 14685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8271/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8280/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 10189:11361 - contained in read 538318 3966- 12540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8281/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 5683:6415 - contained in read 664020 2162- 8360 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8283/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 0:1373 - contained in read 437249 0- 4869 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8287/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8291/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8298/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 13911:16685 - contained in read 316280 8158- 20182 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8300/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8303/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8304/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8305/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8312/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8314/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1429:4606 - contained in read 615442 0- 5571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8332/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 15017:16211 - contained in read 568564 10124- 16211 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8336/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2774:5673 - contained in read 247946 18- 7753 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8337/113047. Annotated with 58 overlaps. Scan reads to discard spanned repeats. discard region 527:1740 - contained in read 246639 0- 7663 discard region 1997:6384 - contained in read 246639 0- 7663 thickest edges to the repeat regions: saved region 7150:8082 - closest read 94729 ( +0) 7150:13341 ( +5259) (contained) saved region 7150:8082 - closest 5' read 94729 ( +0) 7150:13341 ( +5259) saved region 7150:8082 - closest 3' read 94729 ( +0) 7150:13341 ( +5259) search for confused edges: discard region 7150:8082 - no confusion in best edges Annotating repeats in reads for tig 8339/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8348/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2205:335 - contained in read 590592 0- 7621 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8362/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8382/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8388/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 735:4437 - contained in read 337083 0- 7383 discard region 4863:7750 - contained in read 578154 735- 7750 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8392/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8395/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8399/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8400/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2873:5046 - contained in read 62262 0- 6624 discard region 6331:6937 - contained in read 417901 2906- 13153 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8406/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8413/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5810:6417 - closest read 372320 ( +0) 5810:10507 ( +4090) (contained) saved region 5810:6417 - closest 5' read 372320 ( +0) 5810:10507 ( +4090) saved region 5810:6417 - closest 3' read 372320 ( +0) 5810:10507 ( +4090) search for confused edges: discard region 5810:6417 - no confusion in best edges Annotating repeats in reads for tig 8418/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8421/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8422/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8425/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8428/113047. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 4022:5588 - contained in read 348683 0- 7324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8430/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7050:9464 - closest read 661957 ( +61) 6989:14736 ( +5272) (contained) saved region 7050:9464 - closest read 661955 ( +59) 6991:14746 ( +5282) (contained) saved region 7050:9464 - closest read 661953 ( +52) 6998:14744 ( +5280) (contained) saved region 7050:9464 - closest read 661954 ( +49) 7001:14735 ( +5271) (contained) saved region 7050:9464 - closest read 661956 ( +46) 7004:14737 ( +5273) (contained) saved region 7050:9464 - closest read 661958 ( +29) 7021:14742 ( +5278) (contained) saved region 7050:9464 - closest read 203218 ( +0) 7050:9473 ( +9) (contained) saved region 7050:9464 - closest 5' read 661955 ( +59) 6991:14746 ( +5282) saved region 7050:9464 - closest 3' read 661957 ( +61) 6989:14736 ( +5272) search for confused edges: discard region 7050:9464 - no confusion in best edges Annotating repeats in reads for tig 8438/113047. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 1394:2587 - contained in read 351819 0- 4147 discard region 12829:14304 - contained in read 204019 7219- 14304 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8440/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8447/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 6880:12112 - contained in read 353711 822- 14225 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8451/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8463/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10826:11748 - contained in read 324432 9549- 15104 discard region 15141:12622 - contained in read 324432 9549- 15104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8470/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1524:5193 - closest 5' read 3187 ( +1524) 0:5038 ( -155) saved region 1524:5193 - closest 3' read 146783 ( -2150) 3674:9073 ( +3880) saved region 6129:9998 - closest read 225728 ( +0) 6129:12611 ( +2613) (contained) saved region 6129:9998 - closest 5' read 225728 ( +0) 6129:12611 ( +2613) saved region 6129:9998 - closest 3' read 225728 ( +0) 6129:12611 ( +2613) search for confused edges: tig 8470 read 547555 pos 3788-9719 IS confused by 5' edge to read 580642 - best edge read 225728 len 3506 erate 0.0323 score 3392.76 - alt edge len 3503 erate 0.0249 score 3415.78 - absdiff 23.02 percdiff 0.6762 discard region 1524:5193 - no confusion in best edges saved region 6129:9998 - 1 best edges are potentially confused break tig 8470 into up to 3 pieces: 0 5629 unique (length 5629) 5629 10498 repeat (length 4869) 10498 25041 unique (length 14543) Creating Unitig 113904 Creating Unitig 113905 Creating Unitig 113906 For tig 8470 unique region 0 5629 - 0/ 7 reads repeat/unique - unitig 113904 created. For tig 8470 repeat region 5629 10498 - 4/ 0 reads repeat/unique - unitig 113906 created. For tig 8470 unique region 10498 25041 - 0/ 11 reads repeat/unique - unitig 113905 created. Annotating repeats in reads for tig 8473/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 10096:11209 - contained in read 360731 5790- 18675 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8475/113047. Annotated with 87 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5998:12575 - closest read 214218 ( +577) 5421:12908 ( +333) (contained) saved region 5998:12575 - closest 5' read 214218 ( +577) 5421:12908 ( +333) saved region 5998:12575 - closest 3' read 214218 ( +577) 5421:12908 ( +333) search for confused edges: discard region 5998:12575 - no confusion in best edges Annotating repeats in reads for tig 8492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8499/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3585:6643 - closest 5' read 572161 ( +3560) 25:5971 ( -672) saved region 3585:6643 - closest 3' read 386897 ( -694) 4279:8405 ( +1762) search for confused edges: tig 8499 read 386896 pos 4333-9613 IS confused by 5' edge to read 81502 - best edge read 572161 len 1620 erate 0.0404 score 1554.55 - alt edge len 1188 erate 0.0603 score 1116.36 - absdiff 438.19 percdiff 32.8118 saved region 3585:6643 - 1 best edges are potentially confused break tig 8499 into up to 3 pieces: 0 3085 unique (length 3085) 3085 7143 repeat (length 4058) 7143 13325 unique (length 6182) Creating Unitig 113907 Creating Unitig 113908 Creating Unitig 113909 For tig 8499 unique region 0 3085 - 0/ 2 reads repeat/unique - unitig 113907 created. For tig 8499 repeat region 3085 7143 - 3/ 0 reads repeat/unique - unitig 113908 created. For tig 8499 unique region 7143 13325 - 0/ 15 reads repeat/unique - unitig 113909 created. Annotating repeats in reads for tig 8501/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:994 - contained in read 233918 0- 1780 discard region 7199:8890 - contained in read 9307 4308- 9267 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8504/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2817:3975 - contained in read 469014 0- 6558 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8507/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:5691 - contained in read 538642 0- 6651 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8513/113047. Annotated with 102 overlaps. Scan reads to discard spanned repeats. discard region 0:2427 - contained in read 601950 0- 5795 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8531/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8538/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8540/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 8108:9015 - contained in read 365427 2751- 9865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8541/113047. Annotated with 58 overlaps. Scan reads to discard spanned repeats. discard region 0:4975 - contained in read 463730 0- 10239 discard region 6139:6835 - contained in read 463730 0- 10239 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8555/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8571/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16110:19627 - closest read 52505 ( +5489) 10621:20007 ( +380) (contained) saved region 16110:19627 - closest read 52506 ( +5466) 10644:19992 ( +365) (contained) saved region 16110:19627 - closest read 52504 ( +4982) 11128:20004 ( +377) (contained) saved region 16110:19627 - closest read 373239 ( +1465) 14645:20009 ( +382) (contained) saved region 16110:19627 - closest 5' read 373239 ( +1465) 14645:20009 ( +382) saved region 16110:19627 - closest 3' read 52505 ( +5489) 10621:20007 ( +380) search for confused edges: discard region 16110:19627 - no confusion in best edges Annotating repeats in reads for tig 8575/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 0:2478 - contained in read 169712 0- 5716 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8576/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8580/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5789:7098 - contained in read 68995 2906- 9021 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8594/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 7009:9647 - contained in read 617450 4547- 10563 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8600/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8612/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8614/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8625/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8630/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 0:683 - contained in read 110448 0- 5875 discard region 4395:3803 - contained in read 110448 0- 5875 discard region 5411:4745 - contained in read 110448 0- 5875 discard region 6202:5147 - contained in read 110448 0- 5875 discard region 6970:9278 - contained in read 400394 1934- 11171 discard region 10507:11171 - contained in read 400394 1934- 11171 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8644/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 8073:9990 - contained in read 127093 5517- 12240 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8648/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4907:6072 - contained in read 49272 3- 7438 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8668/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2587:4024 - contained in read 477610 0- 6505 discard region 10309:10941 - contained in read 412998 6882- 11608 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8672/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 553:1117 - contained in read 293237 0- 7256 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8674/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8683/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5090:5946 - contained in read 382617 3342- 11226 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8685/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1388:577 - contained in read 418366 0- 3273 discard region 2890:2173 - contained in read 418366 0- 3273 discard region 3273:2516 - contained in read 418366 0- 3273 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8689/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 311:2251 - contained in read 419069 0- 5599 discard region 3383:8470 - contained in read 202331 5- 8470 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8699/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3272:1545 - contained in read 665822 0- 5732 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8700/113047. Annotated with 211 overlaps. Scan reads to discard spanned repeats. discard region 1027:4928 - contained in read 421363 0- 7786 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8716/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8728/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5679:9457 - closest 5' read 677306 ( +526) 5153:9437 ( -20) saved region 5679:9457 - closest 3' read 295173 ( -2362) 8041:13759 ( +4302) search for confused edges: tig 8728 read 677306 pos 5153-9437 IS confused by 5' edge to read 395870 - best edge read 295173 len 1387 erate 0.0669 score 1294.21 - alt edge len 751 erate 0.0571 score 708.12 - absdiff 586.09 percdiff 58.5410 tig 8728 read 677306 pos 5153-9437 IS confused by 5' edge to read 519134 - best edge read 295173 len 1387 erate 0.0669 score 1294.21 - alt edge len 878 erate 0.0285 score 852.98 - absdiff 441.23 percdiff 41.0987 tig 8728 read 677306 pos 5153-9437 IS confused by 5' edge to read 519138 - best edge read 295173 len 1387 erate 0.0669 score 1294.21 - alt edge len 890 erate 0.0259 score 866.95 - absdiff 427.26 percdiff 39.5400 saved region 5679:9457 - 3 best edges are potentially confused break tig 8728 into up to 3 pieces: 0 5179 unique (length 5179) 5179 9957 repeat (length 4778) 9957 13759 unique (length 3802) Creating Unitig 113910 Creating Unitig 113911 Creating Unitig 113912 For tig 8728 unique region 0 5179 - 0/ 16 reads repeat/unique - unitig 113910 created. For tig 8728 repeat region 5179 9957 - 9/ 0 reads repeat/unique - unitig 113911 created. For tig 8728 unique region 9957 13759 - 0/ 1 reads repeat/unique - unitig 113912 created. Annotating repeats in reads for tig 8730/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8733/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10863:12745 - contained in read 521946 8947- 14713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8734/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3361:5200 - contained in read 431491 0- 6484 discard region 6541:8391 - contained in read 189766 2896- 14447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8735/113047. Annotated with 534 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11579:17779 - closest 5' read 440428 ( +3839) 7740:15833 ( -1946) saved region 11579:17779 - closest 3' read 486384 ( -25) 11604:19594 ( +1815) search for confused edges: tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 27667 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1815 erate 0.0667 score 1693.94 - absdiff 157.95 percdiff 8.9090 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 54168 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1340 erate 0.0456 score 1278.90 - absdiff 572.99 percdiff 36.6038 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 54169 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1346 erate 0.0364 score 1297.01 - absdiff 554.88 percdiff 35.2431 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 55920 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 559 erate 0.0501 score 530.99 - absdiff 1320.90 percdiff 110.8653 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 178555 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1408 erate 0.0590 score 1324.93 - absdiff 526.96 percdiff 33.1754 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 178556 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1380 erate 0.0499 score 1311.14 - absdiff 540.75 percdiff 34.1920 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 187716 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1386 erate 0.0642 score 1297.02 - absdiff 554.87 percdiff 35.2421 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 254744 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 718 erate 0.0404 score 688.99 - absdiff 1162.90 percdiff 91.5349 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 281472 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1950 erate 0.0633 score 1826.57 - absdiff 25.32 percdiff 1.3769 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 547103 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 926 erate 0.0562 score 873.96 - absdiff 977.93 percdiff 71.7524 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 686571 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1840 erate 0.0655 score 1719.48 - absdiff 132.41 percdiff 7.4150 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 687136 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 671 erate 0.0401 score 644.09 - absdiff 1207.80 percdiff 96.7792 tig 8735 read 249636 pos 5962-13610 IS confused by 5' edge to read 720885 - best edge read 486384 len 1951 erate 0.0508 score 1851.89 - alt edge len 1951 erate 0.0637 score 1826.72 - absdiff 25.17 percdiff 1.3683 saved region 11579:17779 - 13 best edges are potentially confused break tig 8735 into up to 3 pieces: 0 11079 unique (length 11079) 11079 18279 repeat (length 7200) 18279 19594 unique (length 1315) Creating Unitig 113913 Creating Unitig 113914 Creating Unitig 113915 For tig 8735 unique region 0 11079 - 0/ 12 reads repeat/unique - unitig 113913 created. For tig 8735 repeat region 11079 18279 - 76/ 0 reads repeat/unique - unitig 113914 created. For tig 8735 unique region 18279 19594 - 0/ 2 reads repeat/unique - unitig 113915 created. Annotating repeats in reads for tig 8738/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9973:18343 - closest 5' read 529847 ( +1476) 8497:16368 ( -1975) saved region 9973:18343 - closest 3' read 57697 ( -50) 10023:20194 ( +1851) search for confused edges: tig 8738 read 529847 pos 8497-16368 NOT confused by 5' edge to read 59969 - best edge read 57697 len 6294 erate 0.0223 score 6153.64 - alt edge len 3613 erate 0.0158 score 3555.91 - absdiff 2597.73 percdiff 53.5087 tig 8738 read 529847 pos 8497-16368 NOT confused by 5' edge to read 59970 - best edge read 57697 len 6294 erate 0.0223 score 6153.64 - alt edge len 3617 erate 0.0150 score 3562.74 - absdiff 2590.90 percdiff 53.3305 tig 8738 read 529847 pos 8497-16368 NOT confused by 5' edge to read 132665 - best edge read 57697 len 6294 erate 0.0223 score 6153.64 - alt edge len 3015 erate 0.0136 score 2974.00 - absdiff 3179.65 percdiff 69.6708 tig 8738 read 529847 pos 8497-16368 NOT confused by 5' edge to read 132666 - best edge read 57697 len 6294 erate 0.0223 score 6153.64 - alt edge len 3009 erate 0.0171 score 2957.55 - absdiff 3196.10 percdiff 70.1576 tig 8738 read 529847 pos 8497-16368 IS confused by 5' edge to read 134417 - best edge read 57697 len 6294 erate 0.0223 score 6153.64 - alt edge len 6062 erate 0.0632 score 5678.88 - absdiff 474.76 percdiff 8.0247 tig 8738 read 529847 pos 8497-16368 NOT confused by 5' edge to read 452242 - best edge read 57697 len 6294 erate 0.0223 score 6153.64 - alt edge len 791 erate 0.0431 score 756.91 - absdiff 5396.74 percdiff 156.1883 saved region 9973:18343 - 1 best edges are potentially confused break tig 8738 into up to 3 pieces: 0 9473 unique (length 9473) 9473 18843 repeat (length 9370) 18843 20194 unique (length 1351) Creating Unitig 113916 Creating Unitig 113917 Creating Unitig 113918 For tig 8738 unique region 0 9473 - 0/ 11 reads repeat/unique - unitig 113916 created. For tig 8738 repeat region 9473 18843 - 30/ 0 reads repeat/unique - unitig 113917 created. For tig 8738 unique region 18843 20194 - 0/ 3 reads repeat/unique - unitig 113918 created. Annotating repeats in reads for tig 8742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8743/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12940:10514 - contained in read 579696 4955- 13277 discard region 14923:15944 - contained in read 435487 12591- 20948 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8753/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8757/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8762/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3951:6199 - contained in read 440554 0- 7102 discard region 7242:9581 - contained in read 126156 3313- 9581 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8764/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5436:6119 - contained in read 142616 1287- 9741 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8783/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5815:4888 - contained in read 444396 0- 6899 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8788/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8791/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:2037 - contained in read 660292 0- 5782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8792/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3424:11644 - closest 5' read 568833 ( +0) 3424:11590 ( -54) saved region 3424:11644 - closest 3' read 568831 ( -13) 3437:11644 ( +0) search for confused edges: tig 8792 read 568833 pos 3424-11590 IS confused by 3' edge to read 17332 - best edge read 568831 len 8010 erate 0.0321 score 7752.88 - alt edge len 7660 erate 0.0317 score 7417.18 - absdiff 335.70 percdiff 4.4258 tig 8792 read 568833 pos 3424-11590 NOT confused by 3' edge to read 552103 - best edge read 568831 len 8010 erate 0.0321 score 7752.88 - alt edge len 1065 erate 0.0169 score 1047.00 - absdiff 6705.88 percdiff 152.4084 tig 8792 read 568833 pos 3424-11590 NOT confused by 3' edge to read 672318 - best edge read 568831 len 8010 erate 0.0321 score 7752.88 - alt edge len 1957 erate 0.0261 score 1905.92 - absdiff 5846.96 percdiff 121.0700 tig 8792 read 568831 pos 3437-11644 NOT confused by 5' edge to read 40364 - best edge read 568833 len 8081 erate 0.0321 score 7821.60 - alt edge len 1985 erate 0.0437 score 1898.26 - absdiff 5923.34 percdiff 121.8813 tig 8792 read 568831 pos 3437-11644 NOT confused by 5' edge to read 40365 - best edge read 568833 len 8081 erate 0.0321 score 7821.60 - alt edge len 1984 erate 0.0447 score 1895.32 - absdiff 5926.28 percdiff 121.9787 tig 8792 read 568831 pos 3437-11644 NOT confused by 5' edge to read 261776 - best edge read 568833 len 8081 erate 0.0321 score 7821.60 - alt edge len 1341 erate 0.0460 score 1279.31 - absdiff 6542.29 percdiff 143.7721 saved region 3424:11644 - 1 best edges are potentially confused break tig 8792 into up to 2 pieces: 0 2924 unique (length 2924) 2924 11644 repeat (length 8720) Creating Unitig 113919 Creating Unitig 113920 For tig 8792 unique region 0 2924 - 0/ 4 reads repeat/unique - unitig 113919 created. For tig 8792 repeat region 2924 11644 - 10/ 0 reads repeat/unique - unitig 113920 created. Annotating repeats in reads for tig 8796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8801/113047. Annotated with 531 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8844:14278 - closest read 448577 ( +123) 8721:15547 ( +1269) (contained) saved region 8844:14278 - closest 5' read 448577 ( +123) 8721:15547 ( +1269) saved region 8844:14278 - closest 3' read 448577 ( +123) 8721:15547 ( +1269) search for confused edges: discard region 8844:14278 - no confusion in best edges Annotating repeats in reads for tig 8808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8815/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8818/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:4098 - contained in read 342185 0- 7828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8824/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8507:10339 - contained in read 176927 4075- 11829 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8830/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8840/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 15459:17128 - contained in read 239991 10709- 17128 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8844/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8846/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:983 - contained in read 459921 0- 3958 discard region 20269:21404 - contained in read 57275 14880- 21604 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8847/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7582:6088 - contained in read 346669 34- 7381 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8854/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8857/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8858/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8860/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3084:6700 - closest 5' read 395333 ( +1791) 1293:6503 ( -197) saved region 3084:6700 - closest 3' read 462575 ( -376) 3460:10279 ( +3579) search for confused edges: discard region 3084:6700 - no confusion in best edges Annotating repeats in reads for tig 8868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8875/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8876/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1956 - contained in read 38121 0- 3390 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8892/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 4003:8791 - contained in read 252274 2016- 8791 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8894/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8905/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8914/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8918/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2029:3204 - contained in read 488676 0- 7833 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8931/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 18064:15701 - contained in read 589937 9505- 20127 thickest edges to the repeat regions: saved region 9494:10782 - closest read 589938 ( +0) 9494:13129 ( +2347) (contained) saved region 9494:10782 - closest 5' read 589938 ( +0) 9494:13129 ( +2347) saved region 9494:10782 - closest 3' read 589938 ( +0) 9494:13129 ( +2347) search for confused edges: tig 8931 read 572720 pos 2973-10127 IS confused by 5' edge to read 197166 - best edge read 589938 len 624 erate 0.0400 score 599.04 - alt edge len 616 erate 0.0436 score 589.14 - absdiff 9.90 percdiff 1.6660 tig 8931 read 572720 pos 2973-10127 IS confused by 5' edge to read 362399 - best edge read 589938 len 624 erate 0.0400 score 599.04 - alt edge len 613 erate 0.0621 score 574.93 - absdiff 24.11 percdiff 4.1070 saved region 9494:10782 - 2 best edges are potentially confused break tig 8931 into up to 3 pieces: 0 8994 unique (length 8994) 8994 11282 repeat (length 2288) 11282 20127 unique (length 8845) Creating Unitig 113921 Creating Unitig 113922 Creating Unitig 113923 For tig 8931 unique region 0 8994 - 0/ 14 reads repeat/unique - unitig 113921 created. For tig 8931 repeat region 8994 11282 - 8/ 0 reads repeat/unique - unitig 113923 created. For tig 8931 unique region 11282 20127 - 0/ 5 reads repeat/unique - unitig 113922 created. Annotating repeats in reads for tig 8940/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2469:6872 - contained in read 685381 1261- 9729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8945/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5781:6735 - closest 5' read 155109 ( +5781) 0:6647 ( -88) saved region 5781:6735 - closest 3' read 327654 ( -21) 5802:15833 ( +9098) search for confused edges: tig 8945 read 327652 pos 5803-15853 IS confused by 5' edge to read 323976 - best edge read 155109 len 836 erate 0.0536 score 791.19 - alt edge len 622 erate 0.0666 score 580.57 - absdiff 210.62 percdiff 30.7072 tig 8945 read 327652 pos 5803-15853 IS confused by 5' edge to read 582995 - best edge read 155109 len 836 erate 0.0536 score 791.19 - alt edge len 833 erate 0.0665 score 777.61 - absdiff 13.58 percdiff 1.7319 tig 8945 read 327652 pos 5803-15853 IS confused by 5' edge to read 720049 - best edge read 155109 len 836 erate 0.0536 score 791.19 - alt edge len 787 erate 0.0589 score 740.65 - absdiff 50.54 percdiff 6.5992 saved region 5781:6735 - 3 best edges are potentially confused break tig 8945 into up to 3 pieces: 0 5281 unique (length 5281) 5281 7235 repeat (length 1954) 7235 29359 unique (length 22124) Creating Unitig 113924 Creating Unitig 113925 For tig 8945 unique region 0 5281 - 0/ 2 reads repeat/unique - unitig 113924 created. For tig 8945 repeat region 5281 7235 - 0/ 0 repeat/unique reads - no new unitig created. For tig 8945 unique region 7235 29359 - 0/ 22 reads repeat/unique - unitig 113925 created. Annotating repeats in reads for tig 8948/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 10435:16392 - contained in read 361467 9296- 20097 discard region 22437:24065 - contained in read 573502 18255- 29450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8964/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12113:14142 - closest 5' read 453066 ( +9851) 2262:14125 ( -17) saved region 12113:14142 - closest 3' read 358503 ( -41) 12154:18359 ( +4217) search for confused edges: tig 8964 read 453066 pos 2262-14125 IS confused by 3' edge to read 230257 - best edge read 358503 len 1919 erate 0.0610 score 1801.94 - alt edge len 1198 erate 0.0706 score 1113.42 - absdiff 688.52 percdiff 47.2339 tig 8964 read 453066 pos 2262-14125 IS confused by 3' edge to read 588692 - best edge read 358503 len 1919 erate 0.0610 score 1801.94 - alt edge len 1836 erate 0.0561 score 1733.00 - absdiff 68.94 percdiff 3.9005 tig 8964 read 358503 pos 12154-18359 IS confused by 5' edge to read 407592 - best edge read 453066 len 1932 erate 0.0610 score 1814.15 - alt edge len 1638 erate 0.0661 score 1529.73 - absdiff 284.42 percdiff 17.0114 tig 8964 read 358503 pos 12154-18359 IS confused by 5' edge to read 407594 - best edge read 453066 len 1932 erate 0.0610 score 1814.15 - alt edge len 1592 erate 0.0680 score 1483.74 - absdiff 330.40 percdiff 20.0373 tig 8964 read 358503 pos 12154-18359 IS confused by 5' edge to read 407595 - best edge read 453066 len 1932 erate 0.0610 score 1814.15 - alt edge len 1639 erate 0.0673 score 1528.70 - absdiff 285.45 percdiff 17.0784 tig 8964 read 358503 pos 12154-18359 IS confused by 5' edge to read 571084 - best edge read 453066 len 1932 erate 0.0610 score 1814.15 - alt edge len 745 erate 0.0606 score 699.85 - absdiff 1114.30 percdiff 88.6471 saved region 12113:14142 - 6 best edges are potentially confused break tig 8964 into up to 3 pieces: 0 11613 unique (length 11613) 11613 14642 repeat (length 3029) 14642 18359 unique (length 3717) Creating Unitig 113926 Creating Unitig 113927 Creating Unitig 113928 For tig 8964 unique region 0 11613 - 0/ 21 reads repeat/unique - unitig 113926 created. For tig 8964 repeat region 11613 14642 - 3/ 0 reads repeat/unique - unitig 113927 created. For tig 8964 unique region 14642 18359 - 0/ 3 reads repeat/unique - unitig 113928 created. Annotating repeats in reads for tig 8966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8984/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9012:8013 - contained in read 230524 1922- 8565 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8988/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 1249:6151 - contained in read 336796 0- 9163 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8999/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 8219:7675 - contained in read 492919 0- 8219 discard region 10228:12834 - contained in read 568214 8680- 14774 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9010/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7679:8805 - closest read 518873 ( +3712) 3967:8805 ( +0) (contained) saved region 7679:8805 - closest 5' read 518873 ( +3712) 3967:8805 ( +0) saved region 7679:8805 - closest 3' read 518873 ( +3712) 3967:8805 ( +0) search for confused edges: discard region 7679:8805 - no confusion in best edges Annotating repeats in reads for tig 9013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9017/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 1910:5730 - contained in read 136357 0- 6336 discard region 7349:5743 - contained in read 136357 0- 6336 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9026/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 6598:7251 - contained in read 376640 5618- 10590 thickest edges to the repeat regions: saved region 12366:16126 - closest 5' read 24208 ( +3442) 8924:16088 ( -38) saved region 12366:16126 - closest 3' read 219271 ( -12) 12378:27784 (+11658) search for confused edges: discard region 12366:16126 - no confusion in best edges Annotating repeats in reads for tig 9027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9029/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9043/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9058/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 3135:6508 - contained in read 438911 0- 7512 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9061/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2035:5724 - closest read 11414 ( +2035) 0:6195 ( +471) (contained) saved region 2035:5724 - closest read 11411 ( +1976) 59:6182 ( +458) (contained) saved region 2035:5724 - closest read 11413 ( +1963) 72:6196 ( +472) (contained) saved region 2035:5724 - closest read 11412 ( +1801) 234:6210 ( +486) (contained) saved region 2035:5724 - closest read 11415 ( +0) 2035:6175 ( +451) (contained) saved region 2035:5724 - closest 5' read 11412 ( +1801) 234:6210 ( +486) saved region 2035:5724 - closest 3' read 11414 ( +2035) 0:6195 ( +471) search for confused edges: discard region 2035:5724 - no confusion in best edges Annotating repeats in reads for tig 9062/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 3402:4254 - contained in read 1031 153- 6807 discard region 6852:16503 - contained in read 299657 3042- 21830 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9072/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5615:9128 - contained in read 67610 4124- 10138 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9103/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 489:2223 - contained in read 200017 0- 6579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9111/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9115/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9133/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9135/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9150/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 15005:15660 - contained in read 546647 8524- 16885 thickest edges to the repeat regions: saved region 0:13270 - closest 5' read 216504 ( +0) 0:7500 ( -5770) saved region 0:13270 - closest 3' read 28943 ( -4193) 4193:15660 ( +2390) search for confused edges: tig 9150 read 292888 pos 1436-12157 NOT confused by 5' edge to read 458426 - best edge read 577939 len 8656 erate 0.0254 score 8436.14 - alt edge len 1179 erate 0.0658 score 1101.42 - absdiff 7334.72 percdiff 153.8070 discard region 0:13270 - no confusion in best edges Annotating repeats in reads for tig 9161/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 16088:17523 - contained in read 366305 11473- 17523 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9164/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 11725:14232 - contained in read 234381 8080- 14232 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9165/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 2680:4480 - contained in read 61808 0- 7200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9167/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3261:7823 - closest read 397930 ( +409) 2852:9327 ( +1504) (contained) saved region 3261:7823 - closest read 397929 ( +401) 2860:9186 ( +1363) (contained) saved region 3261:7823 - closest read 397931 ( +397) 2864:9263 ( +1440) (contained) saved region 3261:7823 - closest 5' read 397930 ( +409) 2852:9327 ( +1504) saved region 3261:7823 - closest 3' read 397930 ( +409) 2852:9327 ( +1504) search for confused edges: discard region 3261:7823 - no confusion in best edges Annotating repeats in reads for tig 9177/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:3351 - contained in read 532657 0- 10204 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9188/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 4338:5826 - contained in read 659820 0- 8385 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9198/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7781:12869 - closest read 99423 ( +0) 7781:14067 ( +1198) (contained) saved region 7781:12869 - closest read 99422 ( +0) 7781:14065 ( +1196) (contained) saved region 7781:12869 - closest 5' read 99423 ( +0) 7781:14067 ( +1198) saved region 7781:12869 - closest 3' read 99423 ( +0) 7781:14067 ( +1198) search for confused edges: discard region 7781:12869 - no confusion in best edges Annotating repeats in reads for tig 9199/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7705:9174 - contained in read 547406 1701- 16330 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9206/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9209/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4029:5220 - contained in read 66117 0- 8378 discard region 6553:8002 - contained in read 66115 299- 8795 discard region 9277:10279 - contained in read 539016 3528- 10279 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9212/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9214/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 12586:14825 - contained in read 698660 9657- 15015 thickest edges to the repeat regions: saved region 1963:7643 - closest read 247016 ( +403) 1560:8927 ( +1284) (contained) saved region 1963:7643 - closest read 220723 ( +32) 1931:10101 ( +2458) (contained) saved region 1963:7643 - closest 5' read 220723 ( +32) 1931:10101 ( +2458) saved region 1963:7643 - closest 3' read 247016 ( +403) 1560:8927 ( +1284) search for confused edges: discard region 1963:7643 - no confusion in best edges Annotating repeats in reads for tig 9221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9233/113047. Annotated with 83 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4917:8317 - closest 5' read 131432 ( +4137) 780:7369 ( -948) saved region 4917:8317 - closest 3' read 144785 ( -14) 4931:9973 ( +1656) search for confused edges: tig 9233 read 131432 pos 780-7369 IS confused by 5' edge to read 9614 - best edge read 144785 len 2371 erate 0.0678 score 2210.25 - alt edge len 2164 erate 0.0539 score 2047.36 - absdiff 162.89 percdiff 7.6515 tig 9233 read 131432 pos 780-7369 IS confused by 5' edge to read 70875 - best edge read 144785 len 2371 erate 0.0678 score 2210.25 - alt edge len 2353 erate 0.0581 score 2216.29 - absdiff 6.04 percdiff 0.2731 tig 9233 read 131432 pos 780-7369 IS confused by 5' edge to read 165868 - best edge read 144785 len 2371 erate 0.0678 score 2210.25 - alt edge len 559 erate 0.0469 score 532.78 - absdiff 1677.46 percdiff 122.3074 tig 9233 read 131432 pos 780-7369 IS confused by 5' edge to read 430055 - best edge read 144785 len 2371 erate 0.0678 score 2210.25 - alt edge len 951 erate 0.0509 score 902.59 - absdiff 1307.65 percdiff 84.0167 tig 9233 read 131432 pos 780-7369 IS confused by 5' edge to read 595375 - best edge read 144785 len 2371 erate 0.0678 score 2210.25 - alt edge len 1014 erate 0.0507 score 962.59 - absdiff 1247.66 percdiff 78.6461 tig 9233 read 131432 pos 780-7369 IS confused by 5' edge to read 623624 - best edge read 144785 len 2371 erate 0.0678 score 2210.25 - alt edge len 1780 erate 0.0644 score 1665.37 - absdiff 544.88 percdiff 28.1183 saved region 4917:8317 - 6 best edges are potentially confused break tig 9233 into up to 3 pieces: 0 4417 unique (length 4417) 4417 8817 repeat (length 4400) 8817 9973 unique (length 1156) Creating Unitig 113929 Creating Unitig 113930 Creating Unitig 113931 For tig 9233 unique region 0 4417 - 0/ 7 reads repeat/unique - unitig 113929 created. For tig 9233 repeat region 4417 8817 - 20/ 0 reads repeat/unique - unitig 113931 created. For tig 9233 unique region 8817 9973 - 0/ 1 reads repeat/unique - unitig 113930 created. Annotating repeats in reads for tig 9234/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9246/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 14373:18695 - contained in read 164517 5100- 20494 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9250/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1254:3871 - contained in read 547421 0- 7054 discard region 8207:10788 - contained in read 180223 3154- 14728 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9263/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 10319:9501 - contained in read 100154 2002- 10029 thickest edges to the repeat regions: saved region 15559:17411 - closest 5' read 550321 ( +5824) 9735:16326 ( -1085) saved region 15559:17411 - closest 3' read 674341 ( -22) 15581:20604 ( +3193) search for confused edges: discard region 15559:17411 - no confusion in best edges Annotating repeats in reads for tig 9264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9283/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 16520:17799 - contained in read 515557 1978- 20287 discard region 18751:20358 - contained in read 36181 16520- 22939 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9304/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2353:4204 - contained in read 558849 0- 7244 discard region 4543:7285 - contained in read 558847 4- 7285 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9344/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5987:6827 - contained in read 595845 0- 7686 discard region 7803:7064 - contained in read 595845 0- 7686 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9354/113047. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 3329:5305 - contained in read 570019 0- 5868 discard region 14627:19964 - contained in read 568828 4025- 19964 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9362/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8617:7363 - contained in read 572542 0- 8890 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9364/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 10404:14708 - contained in read 527078 7194- 14708 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9366/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 13116:15853 - contained in read 110289 9061- 15853 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9370/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:6408 - contained in read 575719 0- 8925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9371/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9300:7492 - contained in read 332991 1937- 8425 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9378/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 17263:18446 - contained in read 205278 13015- 19409 discard region 21424:23542 - contained in read 252494 18394- 24969 thickest edges to the repeat regions: saved region 10584:16373 - closest 5' read 163954 ( +4732) 5852:15875 ( -498) saved region 10584:16373 - closest 3' read 476741 ( -1498) 12082:18446 ( +2073) search for confused edges: tig 9378 read 163953 pos 5879-15875 IS confused by 5' edge to read 252495 - best edge read 476741 len 2925 erate 0.0517 score 2773.78 - alt edge len 710 erate 0.0213 score 694.88 - absdiff 2078.90 percdiff 119.8678 saved region 10584:16373 - 1 best edges are potentially confused break tig 9378 into up to 3 pieces: 0 10084 unique (length 10084) 10084 16873 repeat (length 6789) 16873 24999 unique (length 8126) Creating Unitig 113932 Creating Unitig 113933 Creating Unitig 113934 For tig 9378 unique region 0 10084 - 0/ 13 reads repeat/unique - unitig 113932 created. For tig 9378 repeat region 10084 16873 - 2/ 0 reads repeat/unique - unitig 113934 created. For tig 9378 unique region 16873 24999 - 0/ 11 reads repeat/unique - unitig 113933 created. Annotating repeats in reads for tig 9383/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9046:9622 - closest read 721947 ( +0) 9046:15522 ( +5900) (contained) saved region 9046:9622 - closest read 721949 ( +0) 9046:15519 ( +5897) (contained) saved region 9046:9622 - closest 5' read 721947 ( +0) 9046:15522 ( +5900) saved region 9046:9622 - closest 3' read 721947 ( +0) 9046:15522 ( +5900) search for confused edges: discard region 9046:9622 - no confusion in best edges Annotating repeats in reads for tig 9385/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9387/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 6405:8557 - contained in read 23977 0- 11517 discard region 15473:17289 - contained in read 428303 10919- 18839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9391/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 11448:12069 - contained in read 145652 9685- 17652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9399/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9420/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6708:5322 - contained in read 586600 0- 6167 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9421/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 4486:10125 - contained in read 629105 940- 10125 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9422/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9429/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:3810 - contained in read 135731 0- 6081 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9437/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13350:18524 - closest read 69718 ( +0) 13350:19125 ( +601) (contained) saved region 13350:18524 - closest 5' read 69718 ( +0) 13350:19125 ( +601) saved region 13350:18524 - closest 3' read 69718 ( +0) 13350:19125 ( +601) search for confused edges: discard region 13350:18524 - no confusion in best edges Annotating repeats in reads for tig 9441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9451/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9468/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1014:2617 - contained in read 597256 0- 5788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9474/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9487/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 18:655 - contained in read 601594 0- 2228 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9498/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3652:9269 - closest read 170039 ( +3652) 0:9269 ( +0) (contained) saved region 3652:9269 - closest 5' read 170039 ( +3652) 0:9269 ( +0) saved region 3652:9269 - closest 3' read 170039 ( +3652) 0:9269 ( +0) search for confused edges: tig 9498 read 464955 pos 3676-13530 IS confused by 5' edge to read 62632 - best edge read 170039 len 5567 erate 0.0201 score 5455.10 - alt edge len 4585 erate 0.0262 score 4464.87 - absdiff 990.23 percdiff 19.9644 tig 9498 read 464955 pos 3676-13530 IS confused by 5' edge to read 79274 - best edge read 170039 len 5567 erate 0.0201 score 5455.10 - alt edge len 3678 erate 0.0283 score 3573.91 - absdiff 1881.19 percdiff 41.6699 saved region 3652:9269 - 2 best edges are potentially confused break tig 9498 into up to 3 pieces: 0 3152 unique (length 3152) 3152 9769 repeat (length 6617) 9769 23275 unique (length 13506) Creating Unitig 113935 Creating Unitig 113936 Creating Unitig 113937 For tig 9498 unique region 0 3152 - 0/ 1 reads repeat/unique - unitig 113935 created. For tig 9498 repeat region 3152 9769 - 1/ 0 reads repeat/unique - unitig 113937 created. For tig 9498 unique region 9769 23275 - 0/ 22 reads repeat/unique - unitig 113936 created. Annotating repeats in reads for tig 9500/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4215:7484 - contained in read 604611 237- 7484 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9507/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5496:7840 - contained in read 664876 479- 7840 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9514/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:3306 - contained in read 75643 0- 5650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9530/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 4636:5716 - contained in read 721173 0- 6246 discard region 6098:9054 - contained in read 593640 4611- 17133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9534/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9950:10514 - contained in read 687818 5607- 13252 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9539/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5709:10497 - closest 5' read 137479 ( +4479) 1230:8948 ( -1549) saved region 5709:10497 - closest 3' read 530438 ( -254) 5963:23489 (+12992) search for confused edges: tig 9539 read 137479 pos 1230-8948 IS confused by 3' edge to read 120042 - best edge read 530438 len 2961 erate 0.0466 score 2823.02 - alt edge len 917 erate 0.0632 score 859.05 - absdiff 1963.97 percdiff 106.6778 tig 9539 read 137479 pos 1230-8948 IS confused by 3' edge to read 120043 - best edge read 530438 len 2961 erate 0.0466 score 2823.02 - alt edge len 936 erate 0.0630 score 877.03 - absdiff 1945.99 percdiff 105.1870 tig 9539 read 137479 pos 1230-8948 NOT confused by 3' edge to read 199137 - best edge read 530438 len 2961 erate 0.0466 score 2823.02 - alt edge len 647 erate 0.0618 score 607.02 - absdiff 2216.00 percdiff 129.2117 tig 9539 read 137479 pos 1230-8948 IS confused by 3' edge to read 380977 - best edge read 530438 len 2961 erate 0.0466 score 2823.02 - alt edge len 1127 erate 0.0461 score 1075.05 - absdiff 1747.97 percdiff 89.6841 saved region 5709:10497 - 3 best edges are potentially confused break tig 9539 into up to 3 pieces: 0 5209 unique (length 5209) 5209 10997 repeat (length 5788) 10997 23925 unique (length 12928) Creating Unitig 113938 Creating Unitig 113939 Creating Unitig 113940 For tig 9539 unique region 0 5209 - 0/ 9 reads repeat/unique - unitig 113938 created. For tig 9539 repeat region 5209 10997 - 6/ 0 reads repeat/unique - unitig 113939 created. For tig 9539 unique region 10997 23925 - 0/ 11 reads repeat/unique - unitig 113940 created. Annotating repeats in reads for tig 9543/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9760:11839 - closest 5' read 349083 ( +9760) 0:11811 ( -28) saved region 9760:11839 - closest 3' read 319342 ( -1236) 10996:12074 ( +235) search for confused edges: tig 9543 read 612246 pos 11153-18695 IS confused by 5' edge to read 482488 - best edge read 349083 len 661 erate 0.0489 score 628.68 - alt edge len 651 erate 0.0654 score 608.42 - absdiff 20.25 percdiff 3.2742 saved region 9760:11839 - 1 best edges are potentially confused break tig 9543 into up to 3 pieces: 0 9260 unique (length 9260) 9260 12339 repeat (length 3079) 12339 36009 unique (length 23670) Creating Unitig 113941 Creating Unitig 113942 Creating Unitig 113943 For tig 9543 unique region 0 9260 - 0/ 6 reads repeat/unique - unitig 113941 created. For tig 9543 repeat region 9260 12339 - 1/ 0 reads repeat/unique - unitig 113942 created. For tig 9543 unique region 12339 36009 - 0/ 16 reads repeat/unique - unitig 113943 created. Annotating repeats in reads for tig 9559/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 7371:8091 - contained in read 618897 0- 14274 discard region 12162:13454 - contained in read 618897 0- 14274 discard region 13529:18750 - contained in read 226874 11928- 18750 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9563/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2510:1806 - contained in read 619763 0- 5997 discard region 4470:6711 - contained in read 27257 1590- 6711 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9572/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2384:4702 - contained in read 309836 368- 4702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9595/113047. Annotated with 67 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8035:11890 - closest read 519121 ( +0) 8035:15320 ( +3430) (contained) saved region 8035:11890 - closest 5' read 519121 ( +0) 8035:15320 ( +3430) saved region 8035:11890 - closest 3' read 519121 ( +0) 8035:15320 ( +3430) saved region 14532:15320 - closest read 519121 ( +6497) 8035:15320 ( +0) (contained) saved region 14532:15320 - closest 5' read 519121 ( +6497) 8035:15320 ( +0) saved region 14532:15320 - closest 3' read 519121 ( +6497) 8035:15320 ( +0) search for confused edges: tig 9595 read 519122 pos 8038-15316 IS confused by 3' edge to read 97960 - best edge read 519906 len 3749 erate 0.0508 score 3558.55 - alt edge len 2794 erate 0.0434 score 2672.74 - absdiff 885.81 percdiff 28.4310 tig 9595 read 519122 pos 8038-15316 NOT confused by 3' edge to read 244554 - best edge read 519906 len 3749 erate 0.0508 score 3558.55 - alt edge len 1522 erate 0.0647 score 1423.53 - absdiff 2135.02 percdiff 85.7082 tig 9595 read 519122 pos 8038-15316 IS confused by 3' edge to read 368039 - best edge read 519906 len 3749 erate 0.0508 score 3558.55 - alt edge len 1723 erate 0.0674 score 1606.87 - absdiff 1951.68 percdiff 75.5672 tig 9595 read 519122 pos 8038-15316 IS confused by 3' edge to read 391708 - best edge read 519906 len 3749 erate 0.0508 score 3558.55 - alt edge len 2968 erate 0.0650 score 2775.08 - absdiff 783.47 percdiff 24.7400 tig 9595 read 519122 pos 8038-15316 IS confused by 3' edge to read 534660 - best edge read 519906 len 3749 erate 0.0508 score 3558.55 - alt edge len 3128 erate 0.0678 score 2915.92 - absdiff 642.63 percdiff 19.8512 saved region 8035:11890 - 4 best edges are potentially confused discard region 14532:15320 - no confusion in best edges break tig 9595 into up to 3 pieces: 0 7535 unique (length 7535) 7535 12390 repeat (length 4855) 12390 22619 unique (length 10229) Creating Unitig 113944 Creating Unitig 113945 Creating Unitig 113946 For tig 9595 unique region 0 7535 - 0/ 10 reads repeat/unique - unitig 113944 created. For tig 9595 repeat region 7535 12390 - 4/ 0 reads repeat/unique - unitig 113945 created. For tig 9595 unique region 12390 22619 - 0/ 20 reads repeat/unique - unitig 113946 created. Annotating repeats in reads for tig 9642/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9643/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5127:6518 - contained in read 80857 0- 9414 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9650/113047. Annotated with 844 overlaps. Scan reads to discard spanned repeats. discard region 5751:10200 - contained in read 446890 2931- 10200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9666/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9690/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12410:12975 - contained in read 655747 9610- 16084 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9717/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:3399 - contained in read 47695 0- 6685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9733/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:12520 - closest 5' read 571746 ( +0) 0:12450 ( -70) saved region 0:12520 - closest 3' read 567164 ( -6707) 6707:12520 ( +0) search for confused edges: tig 9733 read 656804 pos 8799-14095 IS confused by 5' edge to read 105508 - best edge read 571746 len 3581 erate 0.0404 score 3436.33 - alt edge len 1781 erate 0.0406 score 1708.69 - absdiff 1727.64 percdiff 67.1576 saved region 0:12520 - 1 best edges are potentially confused break tig 9733 into up to 2 pieces: 0 13020 repeat (length 13020) 13020 14319 unique (length 1299) Creating Unitig 113947 Creating Unitig 113948 For tig 9733 repeat region 0 13020 - 17/ 0 reads repeat/unique - unitig 113947 created. For tig 9733 unique region 13020 14319 - 0/ 5 reads repeat/unique - unitig 113948 created. Annotating repeats in reads for tig 9734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9739/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2794:1022 - contained in read 196885 0- 6840 discard region 4847:6069 - contained in read 196885 0- 6840 discard region 8776:10632 - contained in read 658838 4874- 17756 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9768/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9785/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9274:12663 - closest read 46229 ( +3061) 6213:12682 ( +19) (contained) saved region 9274:12663 - closest read 46231 ( +2946) 6328:12694 ( +31) (contained) saved region 9274:12663 - closest read 46234 ( +2944) 6330:12715 ( +52) (contained) saved region 9274:12663 - closest 5' read 46234 ( +2944) 6330:12715 ( +52) saved region 9274:12663 - closest 3' read 46229 ( +3061) 6213:12682 ( +19) search for confused edges: discard region 9274:12663 - no confusion in best edges Annotating repeats in reads for tig 9819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9836/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10640:11723 - closest read 116695 ( +0) 10640:19976 ( +8253) (contained) saved region 10640:11723 - closest 5' read 116695 ( +0) 10640:19976 ( +8253) saved region 10640:11723 - closest 3' read 116695 ( +0) 10640:19976 ( +8253) search for confused edges: tig 9836 read 571271 pos 5727-11684 IS confused by 3' edge to read 15854 - best edge read 116695 len 1035 erate 0.0527 score 980.46 - alt edge len 1002 erate 0.0719 score 929.96 - absdiff 50.50 percdiff 5.2867 tig 9836 read 571271 pos 5727-11684 IS confused by 3' edge to read 29425 - best edge read 116695 len 1035 erate 0.0527 score 980.46 - alt edge len 884 erate 0.0570 score 833.61 - absdiff 146.84 percdiff 16.1894 tig 9836 read 571271 pos 5727-11684 IS confused by 3' edge to read 230861 - best edge read 116695 len 1035 erate 0.0527 score 980.46 - alt edge len 928 erate 0.0474 score 884.01 - absdiff 96.44 percdiff 10.3453 saved region 10640:11723 - 3 best edges are potentially confused break tig 9836 into up to 3 pieces: 0 10140 unique (length 10140) 10140 12223 repeat (length 2083) 12223 20661 unique (length 8438) Creating Unitig 113949 Creating Unitig 113950 Creating Unitig 113951 For tig 9836 unique region 0 10140 - 0/ 14 reads repeat/unique - unitig 113949 created. For tig 9836 repeat region 10140 12223 - 1/ 0 reads repeat/unique - unitig 113951 created. For tig 9836 unique region 12223 20661 - 0/ 3 reads repeat/unique - unitig 113950 created. Annotating repeats in reads for tig 9842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9871/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9872/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9942/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3653:8159 - closest 5' read 477804 ( +1726) 1927:6650 ( -1509) saved region 3653:8159 - closest 3' read 596938 ( -52) 3705:8197 ( +38) search for confused edges: discard region 3653:8159 - no confusion in best edges Annotating repeats in reads for tig 9951/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9429:13844 - contained in read 378393 4975- 15805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9997/113047. Annotated with 665 overlaps. Scan reads to discard spanned repeats. discard region 9803:11237 - contained in read 140344 4926- 11237 thickest edges to the repeat regions: saved region 0:2761 - closest read 720829 ( +0) 0:3007 ( +246) (contained) saved region 0:2761 - closest 5' read 720829 ( +0) 0:3007 ( +246) saved region 0:2761 - closest 3' read 720829 ( +0) 0:3007 ( +246) saved region 3267:8490 - closest read 574872 ( +1510) 1757:8768 ( +278) (contained) saved region 3267:8490 - closest read 574874 ( +1495) 1772:8748 ( +258) (contained) saved region 3267:8490 - closest read 574873 ( +1485) 1782:8755 ( +265) (contained) saved region 3267:8490 - closest read 574875 ( +1469) 1798:8764 ( +274) (contained) saved region 3267:8490 - closest 5' read 574872 ( +1510) 1757:8768 ( +278) saved region 3267:8490 - closest 3' read 574872 ( +1510) 1757:8768 ( +278) search for confused edges: discard region 0:2761 - no confusion in best edges discard region 3267:8490 - no confusion in best edges Annotating repeats in reads for tig 10007/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10010/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 2235:740 - contained in read 304053 0- 8559 discard region 5350:6764 - contained in read 304053 0- 8559 thickest edges to the repeat regions: saved region 9018:10570 - closest 5' read 158555 ( +5595) 3423:10128 ( -442) saved region 9018:10570 - closest 3' read 1834 ( -231) 9249:11322 ( +752) search for confused edges: tig 10010 read 158553 pos 3996-10084 IS confused by 3' edge to read 80571 - best edge read 1839 len 907 erate 0.0587 score 853.76 - alt edge len 536 erate 0.0530 score 507.59 - absdiff 346.17 percdiff 50.8564 saved region 9018:10570 - 1 best edges are potentially confused break tig 10010 into up to 3 pieces: 0 8518 unique (length 8518) 8518 11070 repeat (length 2552) 11070 11451 unique (length 381) Creating Unitig 113952 Creating Unitig 113953 For tig 10010 unique region 0 8518 - 0/ 11 reads repeat/unique - unitig 113952 created. For tig 10010 repeat region 8518 11070 - 0/ 0 repeat/unique reads - no new unitig created. For tig 10010 unique region 11070 11451 - 0/ 4 reads repeat/unique - unitig 113953 created. Annotating repeats in reads for tig 10014/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10017/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1622:10200 - closest read 560067 ( +1622) 0:10223 ( +23) (contained) saved region 1622:10200 - closest 5' read 560067 ( +1622) 0:10223 ( +23) saved region 1622:10200 - closest 3' read 560067 ( +1622) 0:10223 ( +23) search for confused edges: discard region 1622:10200 - no confusion in best edges Annotating repeats in reads for tig 10021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10024/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10031/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6461:5678 - contained in read 313517 13- 6438 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10032/113047. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 5736:7022 - contained in read 442739 804- 7534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10041/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10588:11233 - contained in read 520366 4002- 11789 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10043/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10047/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10051/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10052/113047. Annotated with 108 overlaps. Scan reads to discard spanned repeats. discard region 0:8584 - contained in read 641970 0- 9675 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10054/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4778:5766 - contained in read 192894 12- 7583 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10057/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10061/113047. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 1565:6147 - contained in read 13528 0- 8702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10066/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10070/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10074/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4755:5799 - closest read 15130 ( +4720) 35:5898 ( +99) (contained) saved region 4755:5799 - closest read 556619 ( +1741) 3014:6045 ( +246) (contained) saved region 4755:5799 - closest read 59060 ( +449) 4306:14857 ( +9058) (contained) saved region 4755:5799 - closest read 59059 ( +444) 4311:14814 ( +9015) (contained) saved region 4755:5799 - closest read 59061 ( +391) 4364:14845 ( +9046) (contained) saved region 4755:5799 - closest 5' read 59060 ( +449) 4306:14857 ( +9058) saved region 4755:5799 - closest 3' read 15130 ( +4720) 35:5898 ( +99) search for confused edges: discard region 4755:5799 - no confusion in best edges Annotating repeats in reads for tig 10075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10086/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10093/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 904:2998 - contained in read 594235 3- 6507 discard region 11276:13230 - contained in read 16992 7015- 14288 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10100/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1806:2518 - contained in read 18053 0- 7614 discard region 6261:7346 - contained in read 554130 1192- 8211 discard region 8024:8649 - contained in read 460989 1851- 9206 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10101/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4772:5902 - closest read 551503 ( +0) 4772:10444 ( +4542) (contained) saved region 4772:5902 - closest 5' read 551503 ( +0) 4772:10444 ( +4542) saved region 4772:5902 - closest 3' read 551503 ( +0) 4772:10444 ( +4542) search for confused edges: discard region 4772:5902 - no confusion in best edges Annotating repeats in reads for tig 10102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10104/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10106/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1743:508 - contained in read 360055 0- 7186 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10117/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10378:11201 - contained in read 45466 150- 13055 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10119/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10121/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3493:2155 - contained in read 21758 0- 6919 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10126/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6911:5919 - contained in read 189958 0- 7126 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10129/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9818:10816 - closest read 579830 ( +4591) 5227:10816 ( +0) (contained) saved region 9818:10816 - closest read 646459 ( +0) 9818:16629 ( +5813) (contained) saved region 9818:10816 - closest 5' read 646459 ( +0) 9818:16629 ( +5813) saved region 9818:10816 - closest 3' read 579830 ( +4591) 5227:10816 ( +0) search for confused edges: discard region 9818:10816 - no confusion in best edges Annotating repeats in reads for tig 10130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10136/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10138/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10745:11461 - closest read 576922 ( +7327) 3418:11462 ( +1) (contained) saved region 10745:11461 - closest read 424540 ( +5804) 4941:11467 ( +6) (contained) saved region 10745:11461 - closest read 424542 ( +5698) 5047:11470 ( +9) (contained) saved region 10745:11461 - closest read 424539 ( +5601) 5144:11461 ( +0) (contained) saved region 10745:11461 - closest read 424538 ( +5332) 5413:11465 ( +4) (contained) saved region 10745:11461 - closest read 356949 ( +0) 10745:12625 ( +1164) (contained) saved region 10745:11461 - closest 5' read 356949 ( +0) 10745:12625 ( +1164) saved region 10745:11461 - closest 3' read 576922 ( +7327) 3418:11462 ( +1) search for confused edges: discard region 10745:11461 - no confusion in best edges Annotating repeats in reads for tig 10140/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1943:2914 - contained in read 680032 477- 5233 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10143/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10145/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3786:6072 - contained in read 272115 781- 6692 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10148/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10160/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 4707:5684 - contained in read 402821 2901- 7994 discard region 6163:9067 - contained in read 103327 3683- 9312 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10162/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5546:6613 - contained in read 607508 1382- 7755 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10164/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10167/113047. Annotated with 94 overlaps. Scan reads to discard spanned repeats. discard region 3656:5792 - contained in read 30286 0- 6681 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10171/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10174/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10179/113047. Annotated with 136 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2308:13288 - closest 5' read 31422 ( +47) 2261:12964 ( -324) saved region 2308:13288 - closest 3' read 31423 ( -325) 2633:13352 ( +64) search for confused edges: discard region 2308:13288 - no confusion in best edges Annotating repeats in reads for tig 10180/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4199:6269 - contained in read 631523 1807- 8366 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10191/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10193/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10194/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10199/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2201:3332 - contained in read 177202 0- 13402 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10201/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6690:5664 - contained in read 34889 0- 6690 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10202/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10210/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6762:11431 - closest 5' read 633731 ( +2660) 4102:11260 ( -171) saved region 6762:11431 - closest 3' read 185747 ( -209) 6971:14206 ( +2775) search for confused edges: tig 10210 read 32608 pos 2096-7959 IS confused by 3' edge to read 154192 - best edge read 185747 len 979 erate 0.0287 score 950.90 - alt edge len 652 erate 0.0215 score 637.98 - absdiff 312.92 percdiff 39.3887 saved region 6762:11431 - 1 best edges are potentially confused break tig 10210 into up to 3 pieces: 0 6262 unique (length 6262) 6262 11931 repeat (length 5669) 11931 14206 unique (length 2275) Creating Unitig 113954 Creating Unitig 113955 For tig 10210 unique region 0 6262 - 0/ 10 reads repeat/unique - unitig 113954 created. For tig 10210 repeat region 6262 11931 - 0/ 0 repeat/unique reads - no new unitig created. For tig 10210 unique region 11931 14206 - 0/ 1 reads repeat/unique - unitig 113955 created. Annotating repeats in reads for tig 10211/113047. Annotated with 495 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2924:8269 - closest 5' read 494561 ( +20) 2904:7745 ( -524) saved region 2924:8269 - closest 3' read 576154 ( -428) 3352:8368 ( +99) search for confused edges: discard region 2924:8269 - no confusion in best edges Annotating repeats in reads for tig 10216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10224/113047. Annotated with 134 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8576:14560 - closest 5' read 20452 ( +2931) 5645:12218 ( -2342) saved region 8576:14560 - closest 3' read 626874 ( -1989) 10565:16186 ( +1626) search for confused edges: tig 10224 read 20452 pos 5645-12218 IS confused by 5' edge to read 121432 - best edge read 626874 len 1634 erate 0.0449 score 1560.63 - alt edge len 589 erate 0.0549 score 556.66 - absdiff 1003.97 percdiff 94.8350 tig 10224 read 20452 pos 5645-12218 IS confused by 5' edge to read 138289 - best edge read 626874 len 1634 erate 0.0449 score 1560.63 - alt edge len 1832 erate 0.0411 score 1756.70 - absdiff 196.07 percdiff 11.8210 saved region 8576:14560 - 2 best edges are potentially confused break tig 10224 into up to 3 pieces: 0 8076 unique (length 8076) 8076 15060 repeat (length 6984) 15060 16186 unique (length 1126) Creating Unitig 113956 Creating Unitig 113957 Creating Unitig 113958 For tig 10224 unique region 0 8076 - 0/ 9 reads repeat/unique - unitig 113956 created. For tig 10224 repeat region 8076 15060 - 13/ 0 reads repeat/unique - unitig 113958 created. For tig 10224 unique region 15060 16186 - 0/ 2 reads repeat/unique - unitig 113957 created. Annotating repeats in reads for tig 10226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10231/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5930:7741 - closest 5' read 673553 ( +5823) 107:7729 ( -12) saved region 5930:7741 - closest 3' read 40136 ( -940) 6870:15574 ( +7833) search for confused edges: discard region 5930:7741 - no confusion in best edges Annotating repeats in reads for tig 10234/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10239/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10249/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 835:6809 - contained in read 604994 228- 6809 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10252/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2231:3795 - contained in read 42229 0- 7402 discard region 7599:8296 - contained in read 42230 2663- 9803 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10256/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4249:2917 - contained in read 398208 0- 7352 discard region 4707:3528 - contained in read 398208 0- 7352 discard region 5272:3957 - contained in read 398208 0- 7352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10273/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10285/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10290/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10291/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5410:7211 - contained in read 48479 0- 7997 discard region 7559:9010 - contained in read 257080 4582- 14155 discard region 12902:15401 - contained in read 584093 6199- 15401 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10298/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:4524 - contained in read 312049 0- 6953 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10300/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10308/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5720:3645 - contained in read 51284 458- 6909 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10309/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10320/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 7500:10012 - contained in read 378371 2135- 12330 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10321/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10904:8054 - contained in read 54150 0- 10941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10324/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 566:2576 - contained in read 80434 0- 6023 discard region 3049:4975 - contained in read 80434 0- 6023 discard region 5683:8324 - contained in read 54528 3550- 9028 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10337/113047. Annotated with 301 overlaps. Scan reads to discard spanned repeats. discard region 14816:15889 - contained in read 56739 7061- 15889 thickest edges to the repeat regions: saved region 0:6272 - closest 5' read 671333 ( +0) 0:6268 ( -4) saved region 0:6272 - closest 3' read 569149 ( -4468) 4468:7732 ( +1460) search for confused edges: tig 10337 read 671333 pos 0-6268 IS confused by 5' edge to read 55900 - best edge read 569149 len 1757 erate 0.0537 score 1662.65 - alt edge len 984 erate 0.0480 score 936.77 - absdiff 725.88 percdiff 55.8495 tig 10337 read 671333 pos 0-6268 IS confused by 5' edge to read 86021 - best edge read 569149 len 1757 erate 0.0537 score 1662.65 - alt edge len 844 erate 0.0656 score 788.63 - absdiff 874.02 percdiff 71.3109 saved region 0:6272 - 2 best edges are potentially confused break tig 10337 into up to 2 pieces: 0 6772 repeat (length 6772) 6772 15889 unique (length 9117) Creating Unitig 113959 Creating Unitig 113960 For tig 10337 repeat region 0 6772 - 16/ 0 reads repeat/unique - unitig 113959 created. For tig 10337 unique region 6772 15889 - 0/ 9 reads repeat/unique - unitig 113960 created. Annotating repeats in reads for tig 10339/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1207:6864 - closest 5' read 56805 ( +1207) 0:5317 ( -1547) saved region 1207:6864 - closest 3' read 678008 ( -657) 1864:8681 ( +1817) search for confused edges: discard region 1207:6864 - no confusion in best edges Annotating repeats in reads for tig 10340/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 1315:345 - contained in read 618763 0- 12561 discard region 2128:5592 - contained in read 618763 0- 12561 discard region 6961:11247 - contained in read 618763 0- 12561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10341/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10351/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10352/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10363/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10374/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4233:6077 - closest read 269720 ( +393) 3840:10093 ( +4016) (contained) saved region 4233:6077 - closest read 269719 ( +391) 3842:10078 ( +4001) (contained) saved region 4233:6077 - closest read 60717 ( +9) 4224:10325 ( +4248) (contained) saved region 4233:6077 - closest read 60716 ( +0) 4233:10322 ( +4245) (contained) saved region 4233:6077 - closest 5' read 60717 ( +9) 4224:10325 ( +4248) saved region 4233:6077 - closest 3' read 269720 ( +393) 3840:10093 ( +4016) search for confused edges: discard region 4233:6077 - no confusion in best edges Annotating repeats in reads for tig 10375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10376/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10385/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10388/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10395/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10398/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10405/113047. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 3167:5713 - contained in read 183923 1033- 7713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10407/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10408/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10414/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 6033:8117 - contained in read 66593 0- 9351 discard region 8394:9325 - contained in read 657250 2910- 12612 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10418/113047. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 700:3187 - contained in read 66877 0- 10143 discard region 3681:7438 - contained in read 66877 0- 10143 discard region 8300:11583 - contained in read 236501 2129- 12246 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10424/113047. Annotated with 300 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9068 - closest 5' read 306382 ( +0) 0:6961 ( -2107) saved region 0:9068 - closest 3' read 572809 ( -878) 878:9635 ( +567) search for confused edges: discard region 0:9068 - no confusion in best edges Annotating repeats in reads for tig 10427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10429/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 2319:4939 - contained in read 68255 7- 5791 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10430/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:2834 - contained in read 269712 0- 6991 discard region 3739:4451 - contained in read 269712 0- 6991 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10432/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10440/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10443/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10838:9505 - contained in read 226782 695- 10228 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10451/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10456/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10460/113047. Annotated with 139 overlaps. Scan reads to discard spanned repeats. discard region 0:1542 - contained in read 72417 0- 10444 thickest edges to the repeat regions: saved region 2160:11977 - closest read 261789 ( +109) 2051:11977 ( +0) (contained) saved region 2160:11977 - closest 5' read 261789 ( +109) 2051:11977 ( +0) saved region 2160:11977 - closest 3' read 261789 ( +109) 2051:11977 ( +0) search for confused edges: tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 12677 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 1610 erate 0.0232 score 1572.65 - absdiff 6107.67 percdiff 132.0154 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 70146 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 3338 erate 0.0183 score 3276.91 - absdiff 4403.40 percdiff 80.3744 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 263250 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 1505 erate 0.0451 score 1437.12 - absdiff 6243.19 percdiff 136.9505 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 407545 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 3397 erate 0.0168 score 3339.93 - absdiff 4340.39 percdiff 78.7711 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 407546 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 3439 erate 0.0145 score 3389.13 - absdiff 4291.18 percdiff 77.5320 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 465571 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 5480 erate 0.0093 score 5429.04 - absdiff 2251.28 percdiff 34.3462 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 534808 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 2168 erate 0.0406 score 2079.98 - absdiff 5600.34 percdiff 114.7575 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 563431 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 848 erate 0.0391 score 814.84 - absdiff 6865.47 percdiff 161.6326 tig 10460 read 72417 pos 0-10444 NOT confused by 3' edge to read 563432 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 854 erate 0.0355 score 823.68 - absdiff 6856.63 percdiff 161.2567 tig 10460 read 72417 pos 0-10444 IS confused by 3' edge to read 661474 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 7496 erate 0.0101 score 7420.29 - absdiff 260.03 percdiff 3.4439 tig 10460 read 72417 pos 0-10444 IS confused by 3' edge to read 669962 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 7214 erate 0.0098 score 7143.30 - absdiff 537.01 percdiff 7.2454 tig 10460 read 72417 pos 0-10444 IS confused by 3' edge to read 721574 - best edge read 261789 len 8161 erate 0.0589 score 7680.32 - alt edge len 6884 erate 0.0096 score 6817.91 - absdiff 862.40 percdiff 11.8967 saved region 2160:11977 - 3 best edges are potentially confused break tig 10460 into up to 2 pieces: 0 1660 unique (length 1660) 1660 11977 repeat (length 10317) Creating Unitig 113961 Creating Unitig 113962 For tig 10460 unique region 0 1660 - 0/ 4 reads repeat/unique - unitig 113961 created. For tig 10460 repeat region 1660 11977 - 64/ 0 reads repeat/unique - unitig 113962 created. Annotating repeats in reads for tig 10462/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4313:11254 - closest read 433826 ( +2531) 1782:11600 ( +346) (contained) saved region 4313:11254 - closest read 433825 ( +2523) 1790:11620 ( +366) (contained) saved region 4313:11254 - closest read 433824 ( +0) 4313:11627 ( +373) (contained) saved region 4313:11254 - closest 5' read 433824 ( +0) 4313:11627 ( +373) saved region 4313:11254 - closest 3' read 433826 ( +2531) 1782:11600 ( +346) search for confused edges: discard region 4313:11254 - no confusion in best edges Annotating repeats in reads for tig 10464/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2882:4805 - contained in read 73162 0- 9348 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10466/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8553:9785 - contained in read 73644 0- 13766 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10470/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10472/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10475/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 16036:14862 - contained in read 74891 11605- 17938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10480/113047. Annotated with 206 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 580:9062 - closest read 308216 ( +0) 580:9062 ( +0) (contained) saved region 580:9062 - closest 5' read 308216 ( +0) 580:9062 ( +0) saved region 580:9062 - closest 3' read 308216 ( +0) 580:9062 ( +0) search for confused edges: discard region 580:9062 - no confusion in best edges Annotating repeats in reads for tig 10482/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10486/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10508/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6282:7591 - contained in read 686041 20- 8772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10511/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10512/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 1234:5019 - contained in read 533548 0- 7133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10537/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10542/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10543/113047. Annotated with 554 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4991 - closest 5' read 588470 ( +0) 0:3591 ( -1400) saved region 0:4991 - closest 3' read 532060 ( -4) 4:5976 ( +985) search for confused edges: discard region 0:4991 - no confusion in best edges Annotating repeats in reads for tig 10546/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10548/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1090:5875 - contained in read 420616 23- 7762 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10550/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12552:11955 - contained in read 537713 6490- 12549 discard region 12552:12002 - contained in read 537713 6490- 12549 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10558/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10560/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3618:8578 - contained in read 88832 2792- 8912 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10561/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10575/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10579/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10588/113047. Annotated with 321 overlaps. Scan reads to discard spanned repeats. discard region 3390:4965 - contained in read 93493 0- 5884 discard region 5924:9685 - contained in read 712857 3390- 9685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10591/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5790:8113 - contained in read 268299 2533- 8683 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10592/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:788 - contained in read 687241 0- 11165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10597/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10599/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 610:5501 - contained in read 623659 0- 6912 discard region 5711:8006 - contained in read 267284 4318- 9264 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10600/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10607/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10610/113047. Annotated with 184 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9894 - closest 5' read 54448 ( +0) 0:4922 ( -4972) saved region 0:9894 - closest 3' read 240828 ( -5727) 5727:11487 ( +1593) search for confused edges: tig 10610 read 54448 pos 0-4922 IS confused by 3' edge to read 240828 - best edge read 662662 len 3227 erate 0.0722 score 2994.01 - alt edge len 3104 erate 0.0298 score 3011.50 - absdiff 17.49 percdiff 0.5825 tig 10610 read 95938 pos 67-4703 IS confused by 3' edge to read 240828 - best edge read 54448 len 4572 erate 0.0612 score 4292.19 - alt edge len 2823 erate 0.0534 score 2672.25 - absdiff 1619.94 percdiff 46.5203 tig 10610 read 662662 pos 86-5842 IS confused by 5' edge to read 102776 - best edge read 54448 len 3339 erate 0.0722 score 3097.92 - alt edge len 1090 erate 0.0589 score 1025.80 - absdiff 2072.13 percdiff 100.4978 tig 10610 read 662662 pos 86-5842 IS confused by 5' edge to read 317555 - best edge read 54448 len 3339 erate 0.0722 score 3097.92 - alt edge len 1116 erate 0.0459 score 1064.78 - absdiff 2033.15 percdiff 97.6841 tig 10610 read 78218 pos 1713-8094 NOT confused by 5' edge to read 102776 - best edge read 662662 len 3885 erate 0.0460 score 3706.29 - alt edge len 851 erate 0.0546 score 804.54 - absdiff 2901.75 percdiff 128.6574 saved region 0:9894 - 4 best edges are potentially confused break tig 10610 into up to 2 pieces: 0 10394 repeat (length 10394) 10394 11820 unique (length 1426) Creating Unitig 113963 Creating Unitig 113964 For tig 10610 repeat region 0 10394 - 62/ 0 reads repeat/unique - unitig 113963 created. For tig 10610 unique region 10394 11820 - 0/ 4 reads repeat/unique - unitig 113964 created. Annotating repeats in reads for tig 10611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10632/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6214:7109 - contained in read 261274 1195- 8209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10635/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4647:5522 - contained in read 610137 0- 9683 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10638/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11273:12488 - contained in read 241299 10660- 16928 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10639/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10645/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3305:4911 - closest 5' read 528268 ( +3290) 15:4897 ( -14) saved region 3305:4911 - closest 3' read 372019 ( -695) 4000:11131 ( +6220) search for confused edges: tig 10645 read 372019 pos 4000-11131 IS confused by 5' edge to read 66309 - best edge read 528269 len 888 erate 0.0522 score 841.65 - alt edge len 883 erate 0.0458 score 842.56 - absdiff 0.91 percdiff 0.1083 saved region 3305:4911 - 1 best edges are potentially confused break tig 10645 into up to 3 pieces: 0 2805 unique (length 2805) 2805 5411 repeat (length 2606) 5411 11299 unique (length 5888) Creating Unitig 113965 Creating Unitig 113966 For tig 10645 unique region 0 2805 - 0/ 2 reads repeat/unique - unitig 113965 created. For tig 10645 repeat region 2805 5411 - 0/ 0 repeat/unique reads - no new unitig created. For tig 10645 unique region 5411 11299 - 0/ 6 reads repeat/unique - unitig 113966 created. Annotating repeats in reads for tig 10646/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 20898:20287 - contained in read 394028 7310- 24461 discard region 20898:20292 - contained in read 394028 7310- 24461 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10662/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10664/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8361:8981 - contained in read 401996 5250- 12826 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10671/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 8657:10310 - contained in read 469284 5599- 13106 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10675/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10682/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6970:7690 - contained in read 106670 4- 9146 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10683/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5056:9493 - closest read 106738 ( +5056) 0:9531 ( +38) (contained) saved region 5056:9493 - closest read 106737 ( +4975) 81:9541 ( +48) (contained) saved region 5056:9493 - closest read 106739 ( +4484) 572:9549 ( +56) (contained) saved region 5056:9493 - closest read 106736 ( +1010) 4046:9548 ( +55) (contained) saved region 5056:9493 - closest 5' read 106739 ( +4484) 572:9549 ( +56) saved region 5056:9493 - closest 3' read 106738 ( +5056) 0:9531 ( +38) search for confused edges: discard region 5056:9493 - no confusion in best edges Annotating repeats in reads for tig 10685/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5506:9710 - closest read 97515 ( +98) 5408:11611 ( +1901) (contained) saved region 5506:9710 - closest 5' read 97515 ( +98) 5408:11611 ( +1901) saved region 5506:9710 - closest 3' read 97515 ( +98) 5408:11611 ( +1901) search for confused edges: discard region 5506:9710 - no confusion in best edges Annotating repeats in reads for tig 10686/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6273:9073 - contained in read 624705 4722- 10387 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10699/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5813:4256 - contained in read 590533 0- 6539 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10700/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10702/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10704/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1477:0 - contained in read 109643 0- 6679 discard region 28116:29631 - contained in read 428468 17917- 29631 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10705/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2046:3155 - contained in read 109654 0- 7339 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10714/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3494:5013 - contained in read 110409 0- 8582 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10715/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10722/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10728/113047. Annotated with 148 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3258:9038 - closest 5' read 323409 ( +3026) 232:8079 ( -959) saved region 3258:9038 - closest 3' read 638410 ( -1017) 4275:11369 ( +2331) search for confused edges: tig 10728 read 323410 pos 191-8015 NOT confused by 5' edge to read 151373 - best edge read 638410 len 3705 erate 0.0422 score 3548.65 - alt edge len 1411 erate 0.0448 score 1347.79 - absdiff 2200.86 percdiff 89.8965 tig 10728 read 323410 pos 191-8015 NOT confused by 5' edge to read 151375 - best edge read 638410 len 3705 erate 0.0422 score 3548.65 - alt edge len 1408 erate 0.0407 score 1350.69 - absdiff 2197.95 percdiff 89.7245 tig 10728 read 323410 pos 191-8015 NOT confused by 5' edge to read 151377 - best edge read 638410 len 3705 erate 0.0422 score 3548.65 - alt edge len 1410 erate 0.0385 score 1355.71 - absdiff 2192.93 percdiff 89.4279 tig 10728 read 323410 pos 191-8015 NOT confused by 5' edge to read 156323 - best edge read 638410 len 3705 erate 0.0422 score 3548.65 - alt edge len 985 erate 0.0377 score 947.87 - absdiff 2600.78 percdiff 115.6800 tig 10728 read 323410 pos 191-8015 NOT confused by 5' edge to read 156325 - best edge read 638410 len 3705 erate 0.0422 score 3548.65 - alt edge len 990 erate 0.0415 score 948.91 - absdiff 2599.73 percdiff 115.6063 tig 10728 read 323410 pos 191-8015 IS confused by 5' edge to read 536320 - best edge read 638410 len 3705 erate 0.0422 score 3548.65 - alt edge len 3685 erate 0.0681 score 3434.05 - absdiff 114.60 percdiff 3.2823 tig 10728 read 638410 pos 4275-11369 NOT confused by 5' edge to read 367451 - best edge read 323410 len 3749 erate 0.0459 score 3576.92 - alt edge len 1441 erate 0.0632 score 1349.93 - absdiff 2226.99 percdiff 90.4023 tig 10728 read 638410 pos 4275-11369 NOT confused by 5' edge to read 500253 - best edge read 323410 len 3749 erate 0.0459 score 3576.92 - alt edge len 1119 erate 0.0634 score 1048.06 - absdiff 2528.87 percdiff 109.3569 tig 10728 read 638410 pos 4275-11369 IS confused by 5' edge to read 597927 - best edge read 323410 len 3749 erate 0.0459 score 3576.92 - alt edge len 2154 erate 0.0490 score 2048.45 - absdiff 1528.47 percdiff 54.3419 tig 10728 read 638410 pos 4275-11369 IS confused by 5' edge to read 641005 - best edge read 323410 len 3749 erate 0.0459 score 3576.92 - alt edge len 2589 erate 0.0678 score 2413.47 - absdiff 1163.46 percdiff 38.8441 saved region 3258:9038 - 3 best edges are potentially confused break tig 10728 into up to 3 pieces: 0 2758 unique (length 2758) 2758 9538 repeat (length 6780) 9538 11946 unique (length 2408) Creating Unitig 113967 Creating Unitig 113968 Creating Unitig 113969 For tig 10728 unique region 0 2758 - 0/ 9 reads repeat/unique - unitig 113967 created. For tig 10728 repeat region 2758 9538 - 39/ 0 reads repeat/unique - unitig 113968 created. For tig 10728 unique region 9538 11946 - 0/ 4 reads repeat/unique - unitig 113969 created. Annotating repeats in reads for tig 10729/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10738/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6165:8804 - contained in read 248706 38- 8804 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10739/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10745/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1321:0 - contained in read 114408 0- 6533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10746/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10747/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2643:3944 - contained in read 72390 0- 7073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10753/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10755/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10756/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6258:7901 - contained in read 68024 1802- 8765 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10763/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2646:5400 - closest read 103755 ( +2646) 0:5472 ( +72) (contained) saved region 2646:5400 - closest read 103757 ( +3) 2643:5472 ( +72) (contained) saved region 2646:5400 - closest 5' read 103755 ( +2646) 0:5472 ( +72) saved region 2646:5400 - closest 3' read 103755 ( +2646) 0:5472 ( +72) search for confused edges: discard region 2646:5400 - no confusion in best edges Annotating repeats in reads for tig 10769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10775/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 9800:10836 - contained in read 518798 2737- 14268 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10779/113047. Annotated with 1020 overlaps. Scan reads to discard spanned repeats. discard region 8889:15839 - contained in read 120576 8242- 17555 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10781/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 6517:8835 - contained in read 380411 5118- 11136 discard region 9828:11136 - contained in read 120951 7540- 12565 thickest edges to the repeat regions: saved region 0:6532 - closest 5' read 570533 ( +0) 0:1888 ( -4644) saved region 0:6532 - closest 3' read 542198 ( -391) 391:7025 ( +493) search for confused edges: tig 10781 read 570533 pos 0-1888 IS confused by 3' edge to read 120951 - best edge read 542198 len 1043 erate 0.0739 score 965.92 - alt edge len 561 erate 0.0617 score 526.39 - absdiff 439.54 percdiff 58.9069 tig 10781 read 570533 pos 0-1888 IS confused by 3' edge to read 495935 - best edge read 542198 len 1043 erate 0.0739 score 965.92 - alt edge len 739 erate 0.0555 score 697.99 - absdiff 267.94 percdiff 32.2057 saved region 0:6532 - 2 best edges are potentially confused break tig 10781 into up to 2 pieces: 0 7032 repeat (length 7032) 7032 12565 unique (length 5533) Creating Unitig 113970 Creating Unitig 113971 For tig 10781 repeat region 0 7032 - 8/ 0 reads repeat/unique - unitig 113970 created. For tig 10781 unique region 7032 12565 - 0/ 10 reads repeat/unique - unitig 113971 created. Annotating repeats in reads for tig 10784/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4519:6919 - contained in read 470959 2725- 7690 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10786/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:2799 - contained in read 66472 0- 5721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10791/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10794/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8722:12463 - closest 5' read 95280 ( +6312) 2410:10196 ( -2267) saved region 8722:12463 - closest 3' read 676900 ( -741) 9463:14579 ( +2116) search for confused edges: discard region 8722:12463 - no confusion in best edges Annotating repeats in reads for tig 10796/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 11633:12422 - contained in read 355404 8903- 14745 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10797/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10799/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 249:1724 - contained in read 47967 0- 5943 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10801/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10802/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4243:3147 - contained in read 123331 0- 5811 discard region 4244:3245 - contained in read 123331 0- 5811 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10804/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10818/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10826/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10830/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 13355:14958 - contained in read 712595 558- 16527 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10836/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10842/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 5901:10632 - contained in read 595836 4040- 11880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10844/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2279:2838 - contained in read 130339 0- 5200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10853/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10860/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:1635 - contained in read 683313 0- 2771 thickest edges to the repeat regions: saved region 5116:8380 - closest 5' read 133722 ( +4639) 477:6902 ( -1478) saved region 5116:8380 - closest 3' read 488481 ( -58) 5174:11476 ( +3096) search for confused edges: tig 10860 read 133722 pos 477-6902 IS confused by 3' edge to read 1837 - best edge read 488481 len 1771 erate 0.0678 score 1650.93 - alt edge len 1337 erate 0.0595 score 1257.45 - absdiff 393.48 percdiff 27.0583 saved region 5116:8380 - 1 best edges are potentially confused break tig 10860 into up to 3 pieces: 0 4616 unique (length 4616) 4616 8880 repeat (length 4264) 8880 11671 unique (length 2791) Creating Unitig 113972 Creating Unitig 113973 Creating Unitig 113974 For tig 10860 unique region 0 4616 - 0/ 5 reads repeat/unique - unitig 113972 created. For tig 10860 repeat region 4616 8880 - 5/ 0 reads repeat/unique - unitig 113974 created. For tig 10860 unique region 8880 11671 - 0/ 4 reads repeat/unique - unitig 113973 created. Annotating repeats in reads for tig 10866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10874/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10881/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 0:4103 - contained in read 135693 0- 8194 discard region 5670:6790 - contained in read 135693 0- 8194 discard region 7487:8206 - contained in read 713777 5267- 12199 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10893/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10894/113047. Annotated with 119 overlaps. Scan reads to discard spanned repeats. discard region 1000:7610 - contained in read 398780 0- 8655 thickest edges to the repeat regions: saved region 7898:16312 - closest read 345341 ( +377) 7521:16312 ( +0) (contained) saved region 7898:16312 - closest 5' read 345341 ( +377) 7521:16312 ( +0) saved region 7898:16312 - closest 3' read 345341 ( +377) 7521:16312 ( +0) search for confused edges: tig 10894 read 210346 pos 1081-12804 NOT confused by 3' edge to read 104091 - best edge read 398783 len 3826 erate 0.0252 score 3729.58 - alt edge len 883 erate 0.0658 score 824.90 - absdiff 2904.69 percdiff 127.5528 discard region 7898:16312 - no confusion in best edges Annotating repeats in reads for tig 10896/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13669:14732 - contained in read 612225 8655- 16771 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10908/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10910/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10911/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 2747:3912 - contained in read 141005 0- 5970 discard region 6010:7072 - contained in read 42539 4272- 9559 discard region 8446:9231 - contained in read 4186 5598- 11069 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10914/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10453:13823 - closest read 152366 ( +3638) 6815:13823 ( +0) (contained) saved region 10453:13823 - closest read 191169 ( +395) 10058:16894 ( +3071) (contained) saved region 10453:13823 - closest read 191170 ( +358) 10095:14402 ( +579) (contained) saved region 10453:13823 - closest read 141140 ( +348) 10105:17526 ( +3703) (contained) saved region 10453:13823 - closest read 141139 ( +348) 10105:17499 ( +3676) (contained) saved region 10453:13823 - closest 5' read 141140 ( +348) 10105:17526 ( +3703) saved region 10453:13823 - closest 3' read 152366 ( +3638) 6815:13823 ( +0) search for confused edges: discard region 10453:13823 - no confusion in best edges Annotating repeats in reads for tig 10918/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5710:8204 - contained in read 418386 3998- 9737 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10932/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10936/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1651 - contained in read 145297 0- 6096 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10937/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1139:2933 - contained in read 542159 432- 6173 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10946/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10953/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 6632:10134 - contained in read 270500 2040- 11649 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10955/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4484:5868 - contained in read 481598 0- 7859 thickest edges to the repeat regions: saved region 11129:12203 - closest read 315428 ( +8858) 2271:12242 ( +39) (contained) saved region 11129:12203 - closest read 453189 ( +7383) 3746:12203 ( +0) (contained) saved region 11129:12203 - closest 5' read 315428 ( +8858) 2271:12242 ( +39) saved region 11129:12203 - closest 3' read 315428 ( +8858) 2271:12242 ( +39) search for confused edges: discard region 11129:12203 - no confusion in best edges Annotating repeats in reads for tig 10956/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12375:10574 - contained in read 716798 5061- 16983 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10958/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10959/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 0:5278 - contained in read 114617 0- 7898 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10982/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1984:4425 - contained in read 656686 0- 8275 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11001/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:690 - contained in read 482455 0- 3736 discard region 2359:3410 - contained in read 431800 1414- 6769 discard region 8203:8970 - contained in read 155661 6187- 8970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11003/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3347:3897 - contained in read 453269 0- 6641 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11005/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 4341:7486 - contained in read 229040 1141- 8528 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11011/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11015/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10340:9333 - contained in read 649501 1755- 14924 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11016/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8235:8873 - closest 5' read 642821 ( +8235) 0:8818 ( -55) saved region 8235:8873 - closest 3' read 561307 ( -2) 8237:16815 ( +7942) search for confused edges: tig 11016 read 561307 pos 8237-16815 IS confused by 3' edge to read 41441 - best edge read 642821 len 583 erate 0.0669 score 544.00 - alt edge len 551 erate 0.0699 score 512.49 - absdiff 31.51 percdiff 5.9655 saved region 8235:8873 - 1 best edges are potentially confused break tig 11016 into up to 3 pieces: 0 7735 unique (length 7735) 7735 9373 repeat (length 1638) 9373 21620 unique (length 12247) Creating Unitig 113975 Creating Unitig 113976 For tig 11016 unique region 0 7735 - 0/ 8 reads repeat/unique - unitig 113975 created. For tig 11016 repeat region 7735 9373 - 0/ 0 repeat/unique reads - no new unitig created. For tig 11016 unique region 9373 21620 - 0/ 16 reads repeat/unique - unitig 113976 created. Annotating repeats in reads for tig 11017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11020/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11039/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11053/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3769:11063 - closest read 53131 ( +198) 3571:11063 ( +0) (contained) saved region 3769:11063 - closest 5' read 53131 ( +198) 3571:11063 ( +0) saved region 3769:11063 - closest 3' read 53131 ( +198) 3571:11063 ( +0) search for confused edges: discard region 3769:11063 - no confusion in best edges Annotating repeats in reads for tig 11054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11057/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11065/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 10610:9686 - contained in read 204496 6877- 10617 thickest edges to the repeat regions: saved region 6868:9068 - closest read 586226 ( +3604) 3264:9218 ( +150) (contained) saved region 6868:9068 - closest read 586224 ( +2798) 4070:9234 ( +166) (contained) saved region 6868:9068 - closest read 586225 ( +2789) 4079:9230 ( +162) (contained) saved region 6868:9068 - closest read 401757 ( +1872) 4996:9236 ( +168) (contained) saved region 6868:9068 - closest read 586227 ( +1839) 5029:9226 ( +158) (contained) saved region 6868:9068 - closest read 670832 ( +0) 6868:9316 ( +248) (contained) saved region 6868:9068 - closest 5' read 670832 ( +0) 6868:9316 ( +248) saved region 6868:9068 - closest 3' read 586226 ( +3604) 3264:9218 ( +150) search for confused edges: discard region 6868:9068 - no confusion in best edges Annotating repeats in reads for tig 11069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11070/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11075/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4848:6992 - contained in read 272260 1311- 6992 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11076/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4812:5351 - contained in read 489891 3866- 10820 thickest edges to the repeat regions: saved region 9983:16285 - closest 5' read 489890 ( +6113) 3870:10824 ( -5461) saved region 9983:16285 - closest 3' read 554687 ( -299) 10282:21448 ( +5163) search for confused edges: discard region 9983:16285 - no confusion in best edges Annotating repeats in reads for tig 11077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11078/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6468:5697 - contained in read 465808 0- 6468 discard region 6468:5727 - contained in read 465808 0- 6468 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11079/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3436:2617 - contained in read 165997 0- 5165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11088/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4881:7539 - contained in read 168311 3478- 7990 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11091/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7332:7933 - contained in read 217103 4123- 9124 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11097/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 10078:11829 - contained in read 236519 4582- 11829 thickest edges to the repeat regions: saved region 4582:9367 - closest read 236519 ( +0) 4582:11829 ( +2462) (contained) saved region 4582:9367 - closest 5' read 236519 ( +0) 4582:11829 ( +2462) saved region 4582:9367 - closest 3' read 236519 ( +0) 4582:11829 ( +2462) search for confused edges: tig 11097 read 263106 pos 260-8481 IS confused by 3' edge to read 68252 - best edge read 236519 len 3814 erate 0.0506 score 3621.01 - alt edge len 3674 erate 0.0068 score 3649.02 - absdiff 28.01 percdiff 0.7704 saved region 4582:9367 - 1 best edges are potentially confused break tig 11097 into up to 3 pieces: 0 4082 unique (length 4082) 4082 9867 repeat (length 5785) 9867 11829 unique (length 1962) Creating Unitig 113977 Creating Unitig 113978 Creating Unitig 113979 For tig 11097 unique region 0 4082 - 0/ 10 reads repeat/unique - unitig 113977 created. For tig 11097 repeat region 4082 9867 - 17/ 0 reads repeat/unique - unitig 113979 created. For tig 11097 unique region 9867 11829 - 0/ 1 reads repeat/unique - unitig 113978 created. Annotating repeats in reads for tig 11107/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4708:5786 - contained in read 272455 0- 9340 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11125/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11135/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11142/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 340:2504 - contained in read 176569 0- 3822 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11143/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2006:8829 - closest 5' read 303866 ( +349) 1657:8454 ( -375) saved region 2006:8829 - closest 3' read 551198 ( -5143) 7149:11953 ( +3124) search for confused edges: discard region 2006:8829 - no confusion in best edges Annotating repeats in reads for tig 11146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11151/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11161/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 3386:6518 - contained in read 29139 2710- 9049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11164/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11172/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6333:8051 - contained in read 580990 468- 11995 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11180/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2649:3832 - contained in read 183812 0- 5300 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11201/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9668:7815 - contained in read 219400 474- 8559 discard region 10165:8023 - contained in read 219400 474- 8559 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11206/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11210/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8249:8880 - contained in read 199657 1417- 10953 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11217/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11223/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11225/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11229/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 5486:10080 - contained in read 322861 296- 10080 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11236/113047. Annotated with 93 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 18194:25823 - closest 5' read 128814 (+15342) 2852:18883 ( -6940) saved region 18194:25823 - closest 3' read 44138 ( -26) 18220:31137 ( +5314) search for confused edges: tig 11236 read 128814 pos 2852-18883 IS confused by 3' edge to read 389422 - best edge read 44138 len 671 erate 0.0375 score 645.84 - alt edge len 664 erate 0.0316 score 643.02 - absdiff 2.82 percdiff 0.4376 tig 11236 read 128814 pos 2852-18883 IS confused by 3' edge to read 410565 - best edge read 44138 len 671 erate 0.0375 score 645.84 - alt edge len 562 erate 0.0542 score 531.54 - absdiff 114.30 percdiff 19.4157 saved region 18194:25823 - 2 best edges are potentially confused break tig 11236 into up to 3 pieces: 0 17694 unique (length 17694) 17694 26323 repeat (length 8629) 26323 31137 unique (length 4814) Creating Unitig 113980 Creating Unitig 113981 Creating Unitig 113982 For tig 11236 unique region 0 17694 - 0/ 17 reads repeat/unique - unitig 113980 created. For tig 11236 repeat region 17694 26323 - 22/ 0 reads repeat/unique - unitig 113982 created. For tig 11236 unique region 26323 31137 - 0/ 4 reads repeat/unique - unitig 113981 created. Annotating repeats in reads for tig 11237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11238/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11248/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11254/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11259/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4663:3708 - contained in read 200568 120- 4663 discard region 5219:3849 - contained in read 200568 120- 4663 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11271/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 760:1810 - contained in read 202346 0- 6771 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11273/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11285/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 820:0 - contained in read 345575 0- 4829 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11291/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5929:11413 - contained in read 412255 4538- 11413 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11294/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11298/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5317:4289 - contained in read 207320 0- 7465 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11299/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 6297:10481 - contained in read 343943 2007- 12297 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11300/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11303/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11304/113047. Annotated with 123 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3516:12472 - closest 5' read 64139 ( +2171) 1345:11693 ( -779) saved region 3516:12472 - closest 3' read 310243 ( -170) 3686:12472 ( +0) search for confused edges: tig 11304 read 64139 pos 1345-11693 NOT confused by 5' edge to read 406384 - best edge read 310243 len 7923 erate 0.0301 score 7684.52 - alt edge len 5396 erate 0.0442 score 5157.50 - absdiff 2527.02 percdiff 39.3555 tig 11304 read 64139 pos 1345-11693 NOT confused by 5' edge to read 406385 - best edge read 310243 len 7923 erate 0.0301 score 7684.52 - alt edge len 5288 erate 0.0409 score 5071.72 - absdiff 2612.80 percdiff 40.9650 tig 11304 read 310243 pos 3686-12472 NOT confused by 5' edge to read 118290 - best edge read 64139 len 7958 erate 0.0301 score 7718.46 - alt edge len 1735 erate 0.0675 score 1617.89 - absdiff 6100.58 percdiff 130.6844 tig 11304 read 310243 pos 3686-12472 NOT confused by 5' edge to read 234458 - best edge read 64139 len 7958 erate 0.0301 score 7718.46 - alt edge len 2454 erate 0.0448 score 2344.06 - absdiff 5374.40 percdiff 106.8202 tig 11304 read 310243 pos 3686-12472 NOT confused by 5' edge to read 442273 - best edge read 64139 len 7958 erate 0.0301 score 7718.46 - alt edge len 1164 erate 0.0613 score 1092.65 - absdiff 6625.82 percdiff 150.3969 tig 11304 read 310243 pos 3686-12472 NOT confused by 5' edge to read 442275 - best edge read 64139 len 7958 erate 0.0301 score 7718.46 - alt edge len 2458 erate 0.0636 score 2301.67 - absdiff 5416.79 percdiff 108.1182 tig 11304 read 310243 pos 3686-12472 NOT confused by 5' edge to read 573755 - best edge read 64139 len 7958 erate 0.0301 score 7718.46 - alt edge len 576 erate 0.0452 score 549.96 - absdiff 7168.50 percdiff 173.3945 discard region 3516:12472 - no confusion in best edges Annotating repeats in reads for tig 11305/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11306/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11320/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3597:7547 - contained in read 210573 0- 9563 discard region 10892:11856 - contained in read 232167 2255- 11856 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11323/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 1656:3477 - contained in read 211583 0- 6004 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11324/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3122:1828 - contained in read 211635 0- 5842 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11329/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11332/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11333/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11336/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11348/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11349/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11351/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11352/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2507:4776 - contained in read 631882 0- 5943 discard region 7285:9585 - contained in read 214894 2156- 10137 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11361/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4880:5445 - contained in read 280763 845- 7411 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11362/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11363/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11365/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5525:6537 - contained in read 257068 4970- 7120 thickest edges to the repeat regions: saved region 4962:5555 - closest read 217525 ( +4962) 0:5984 ( +429) (contained) saved region 4962:5555 - closest read 217523 ( +4960) 2:5986 ( +431) (contained) saved region 4962:5555 - closest read 217524 ( +4938) 24:5994 ( +439) (contained) saved region 4962:5555 - closest read 217527 ( +4937) 25:5985 ( +430) (contained) saved region 4962:5555 - closest read 217528 ( +3898) 1064:5996 ( +441) (contained) saved region 4962:5555 - closest read 460444 ( +0) 4962:6284 ( +729) (contained) saved region 4962:5555 - closest 5' read 460444 ( +0) 4962:6284 ( +729) saved region 4962:5555 - closest 3' read 217525 ( +4962) 0:5984 ( +429) search for confused edges: discard region 4962:5555 - no confusion in best edges Annotating repeats in reads for tig 11366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11370/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11372/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11382/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3596:4252 - contained in read 219961 0- 7112 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11392/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11395/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11401/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2514:6163 - contained in read 270450 1519- 10133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11411/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5161:6412 - contained in read 224519 2856- 9102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11414/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11427/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10260:7158 - contained in read 404819 1100- 7746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11431/113047. Annotated with 61 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5072:8173 - closest 5' read 474756 ( +3187) 1885:8164 ( -9) saved region 5072:8173 - closest 3' read 323923 ( -1443) 6515:8173 ( +0) search for confused edges: discard region 5072:8173 - no confusion in best edges Annotating repeats in reads for tig 11433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11446/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 6595:8461 - contained in read 86191 5130- 10982 discard region 10102:8774 - contained in read 86191 5130- 10982 thickest edges to the repeat regions: saved region 728:6302 - closest read 200023 ( +630) 98:6302 ( +0) (contained) saved region 728:6302 - closest 5' read 200023 ( +630) 98:6302 ( +0) saved region 728:6302 - closest 3' read 200023 ( +630) 98:6302 ( +0) search for confused edges: discard region 728:6302 - no confusion in best edges Annotating repeats in reads for tig 11448/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11452/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11466/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11476/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1313:595 - contained in read 236620 0- 4306 discard region 3795:4516 - contained in read 236618 117- 5180 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11482/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5555:6328 - closest read 237814 ( +5529) 26:6328 ( +0) (contained) saved region 5555:6328 - closest read 237816 ( +5518) 37:6328 ( +0) (contained) saved region 5555:6328 - closest 5' read 237814 ( +5529) 26:6328 ( +0) saved region 5555:6328 - closest 3' read 237814 ( +5529) 26:6328 ( +0) search for confused edges: discard region 5555:6328 - no confusion in best edges Annotating repeats in reads for tig 11483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11488/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4200:5221 - contained in read 23175 113- 5973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11509/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 10141:12650 - contained in read 35293 6277- 12650 thickest edges to the repeat regions: saved region 6222:10056 - closest 5' read 593384 ( +4782) 1440:7034 ( -3022) saved region 6222:10056 - closest 3' read 35295 ( -52) 6274:12637 ( +2581) search for confused edges: discard region 6222:10056 - no confusion in best edges Annotating repeats in reads for tig 11514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11523/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11526/113047. Annotated with 469 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 387:9777 - closest read 521965 ( +0) 387:9777 ( +0) (contained) saved region 387:9777 - closest 5' read 521965 ( +0) 387:9777 ( +0) saved region 387:9777 - closest 3' read 521965 ( +0) 387:9777 ( +0) search for confused edges: tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 16358 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2395 erate 0.0572 score 2258.01 - absdiff 4146.70 percdiff 95.7368 tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 69514 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2099 erate 0.0548 score 1983.97 - absdiff 4420.73 percdiff 105.3975 tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 73835 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2810 erate 0.0734 score 2603.75 - absdiff 3800.96 percdiff 84.3865 tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 86124 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2589 erate 0.0682 score 2412.43 - absdiff 3992.28 percdiff 90.5572 tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 478039 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2121 erate 0.0736 score 1964.89 - absdiff 4439.81 percdiff 106.0938 tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 556591 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2422 erate 0.0599 score 2276.92 - absdiff 4127.78 percdiff 95.0924 tig 11526 read 247072 pos 0-7339 NOT confused by 3' edge to read 628000 - best edge read 521965 len 6807 erate 0.0591 score 6404.71 - alt edge len 2045 erate 0.0582 score 1925.98 - absdiff 4478.73 percdiff 107.5235 discard region 387:9777 - no confusion in best edges Annotating repeats in reads for tig 11527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11532/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 4588:11169 - contained in read 323251 3294- 11169 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11549/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4314:9072 - closest 5' read 664212 ( +1406) 2908:8877 ( -195) saved region 4314:9072 - closest 3' read 638364 ( -927) 5241:10212 ( +1140) search for confused edges: discard region 4314:9072 - no confusion in best edges Annotating repeats in reads for tig 11560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11568/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11575/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11585/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11589/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11598/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3252:3909 - contained in read 265086 0- 6517 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11604/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11606/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2502:3198 - closest read 56501 ( +1924) 578:3292 ( +94) (contained) saved region 2502:3198 - closest read 381320 ( +428) 2074:3286 ( +88) (contained) saved region 2502:3198 - closest read 102304 ( +286) 2216:3292 ( +94) (contained) saved region 2502:3198 - closest read 141665 ( +109) 2393:8212 ( +5014) (contained) saved region 2502:3198 - closest read 165549 ( +21) 2481:8374 ( +5176) (contained) saved region 2502:3198 - closest read 165547 ( +13) 2489:8368 ( +5170) (contained) saved region 2502:3198 - closest read 165550 ( +0) 2502:8213 ( +5015) (contained) saved region 2502:3198 - closest 5' read 165549 ( +21) 2481:8374 ( +5176) saved region 2502:3198 - closest 3' read 56501 ( +1924) 578:3292 ( +94) search for confused edges: discard region 2502:3198 - no confusion in best edges Annotating repeats in reads for tig 11608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11615/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6810:7792 - contained in read 451617 0- 9352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11623/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 11004:13287 - contained in read 414251 8379- 14183 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11630/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8488:9293 - contained in read 551966 3236- 9293 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11634/113047. Annotated with 258 overlaps. Scan reads to discard spanned repeats. discard region 3001:9673 - contained in read 100458 247- 13308 discard region 9628:19879 - contained in read 663652 6070- 19879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11635/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11638/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11059:11737 - contained in read 431083 4589- 12251 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11647/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11650/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11664/113047. Annotated with 82 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4411:9243 - closest 5' read 369079 ( +4280) 131:9157 ( -86) saved region 4411:9243 - closest 3' read 413965 ( -343) 4754:10534 ( +1291) search for confused edges: tig 11664 read 369079 pos 131-9157 IS confused by 3' edge to read 214456 - best edge read 413965 len 4373 erate 0.0698 score 4067.76 - alt edge len 2961 erate 0.0509 score 2810.29 - absdiff 1257.48 percdiff 36.5650 saved region 4411:9243 - 1 best edges are potentially confused break tig 11664 into up to 3 pieces: 0 3911 unique (length 3911) 3911 9743 repeat (length 5832) 9743 10561 unique (length 818) Creating Unitig 113983 Creating Unitig 113984 Creating Unitig 113985 For tig 11664 unique region 0 3911 - 0/ 9 reads repeat/unique - unitig 113983 created. For tig 11664 repeat region 3911 9743 - 2/ 0 reads repeat/unique - unitig 113985 created. For tig 11664 unique region 9743 10561 - 0/ 4 reads repeat/unique - unitig 113984 created. Annotating repeats in reads for tig 11665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11668/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11697/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11701/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11709/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11714/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11724/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5008:7186 - contained in read 279853 3792- 9437 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11726/113047. Annotated with 248 overlaps. Scan reads to discard spanned repeats. discard region 1781:2859 - contained in read 280048 0- 6989 discard region 2838:5170 - contained in read 280048 0- 6989 thickest edges to the repeat regions: saved region 5657:11965 - closest read 449876 ( +225) 5432:15868 ( +3903) (contained) saved region 5657:11965 - closest 5' read 449876 ( +225) 5432:15868 ( +3903) saved region 5657:11965 - closest 3' read 449876 ( +225) 5432:15868 ( +3903) saved region 13004:16688 - closest 5' read 449876 ( +7572) 5432:15868 ( -820) saved region 13004:16688 - closest 3' read 101361 ( -808) 13812:21458 ( +4770) search for confused edges: discard region 5657:11965 - no confusion in best edges discard region 13004:16688 - no confusion in best edges Annotating repeats in reads for tig 11732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11738/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11741/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11743/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5394:6053 - contained in read 551100 0- 8598 discard region 8691:10292 - contained in read 10665 1587- 11372 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11745/113047. Annotated with 133 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 150:12913 - closest 5' read 644344 ( +150) 0:11402 ( -1511) saved region 150:12913 - closest 3' read 422450 ( -2581) 2731:12913 ( +0) search for confused edges: discard region 150:12913 - no confusion in best edges Annotating repeats in reads for tig 11749/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2191:3854 - contained in read 283828 0- 6494 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11761/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 16947:13571 - contained in read 419045 8968- 16947 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11767/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11775/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 19706:18534 - contained in read 475277 16333- 22957 thickest edges to the repeat regions: saved region 16333:18053 - closest read 519128 (+15484) 849:18065 ( +12) (contained) saved region 16333:18053 - closest read 475277 ( +0) 16333:22957 ( +4904) (contained) saved region 16333:18053 - closest read 475273 ( +0) 16333:22942 ( +4889) (contained) saved region 16333:18053 - closest 5' read 475277 ( +0) 16333:22957 ( +4904) saved region 16333:18053 - closest 3' read 519128 (+15484) 849:18065 ( +12) search for confused edges: discard region 16333:18053 - no confusion in best edges Annotating repeats in reads for tig 11776/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11782/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 823:0 - contained in read 635225 0- 7944 discard region 1579:292 - contained in read 635225 0- 7944 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11783/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11785/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 5790:7344 - contained in read 290238 1- 9163 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11788/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11791/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6654:10186 - contained in read 613215 3040- 15359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11792/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11799/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11815/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11817/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11823/113047. Annotated with 83 overlaps. Scan reads to discard spanned repeats. discard region 3343:5932 - contained in read 711592 0- 8076 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11826/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 1793:3661 - contained in read 469264 837- 4215 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11835/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11355:12151 - contained in read 14654 0- 13481 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11844/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11850/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 0:4832 - contained in read 719821 0- 5977 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11862/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4746:1855 - contained in read 598569 0- 7774 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11878/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4411:3211 - contained in read 304679 0- 4174 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11886/113047. Annotated with 153 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3577:9229 - closest 5' read 81709 ( +735) 2842:9069 ( -160) saved region 3577:9229 - closest 3' read 122870 ( -658) 4235:9229 ( +0) saved region 10621:12418 - closest read 678426 ( +4383) 6238:12418 ( +0) (contained) saved region 10621:12418 - closest 5' read 678426 ( +4383) 6238:12418 ( +0) saved region 10621:12418 - closest 3' read 678426 ( +4383) 6238:12418 ( +0) search for confused edges: tig 11886 read 538415 pos 4319-10027 IS confused by 3' edge to read 341423 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 2626 erate 0.0489 score 2497.59 - absdiff 1992.26 percdiff 57.0240 tig 11886 read 538415 pos 4319-10027 IS confused by 3' edge to read 358362 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 4448 erate 0.0108 score 4399.96 - absdiff 89.88 percdiff 2.0222 tig 11886 read 538415 pos 4319-10027 NOT confused by 3' edge to read 410203 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 543 erate 0.0516 score 514.98 - absdiff 3974.86 percdiff 158.8412 tig 11886 read 538415 pos 4319-10027 NOT confused by 3' edge to read 410206 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 538 erate 0.0688 score 500.99 - absdiff 3988.86 percdiff 159.8475 tig 11886 read 538415 pos 4319-10027 IS confused by 3' edge to read 434271 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 3986 erate 0.0386 score 3832.14 - absdiff 657.70 percdiff 15.8064 tig 11886 read 538415 pos 4319-10027 IS confused by 3' edge to read 568560 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 4417 erate 0.0120 score 4364.00 - absdiff 125.85 percdiff 2.8428 tig 11886 read 538415 pos 4319-10027 IS confused by 3' edge to read 568561 - best edge read 81709 len 4674 erate 0.0394 score 4489.84 - alt edge len 4420 erate 0.0158 score 4350.16 - absdiff 139.68 percdiff 3.1602 saved region 3577:9229 - 5 best edges are potentially confused discard region 10621:12418 - no confusion in best edges break tig 11886 into up to 3 pieces: 0 3077 unique (length 3077) 3077 9729 repeat (length 6652) 9729 19036 unique (length 9307) Creating Unitig 113986 Creating Unitig 113987 Creating Unitig 113988 For tig 11886 unique region 0 3077 - 0/ 5 reads repeat/unique - unitig 113986 created. For tig 11886 repeat region 3077 9729 - 19/ 0 reads repeat/unique - unitig 113987 created. For tig 11886 unique region 9729 19036 - 0/ 10 reads repeat/unique - unitig 113988 created. Annotating repeats in reads for tig 11887/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11890/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3977:4848 - contained in read 305456 0- 7613 discard region 5403:4874 - contained in read 305456 0- 7613 discard region 5403:4877 - contained in read 305456 0- 7613 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11891/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 11445:14037 - contained in read 657372 499- 15043 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11893/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 14811:19977 - contained in read 504621 9311- 21969 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11895/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11896/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11424:13219 - closest 5' read 467633 ( +3904) 7520:13214 ( -5) saved region 11424:13219 - closest 3' read 554082 ( -652) 12076:13396 ( +177) search for confused edges: discard region 11424:13219 - no confusion in best edges Annotating repeats in reads for tig 11900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11904/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11908/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11910/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11911/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11915/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1453:4100 - contained in read 681992 0- 7413 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11918/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1744:2403 - contained in read 310405 0- 7104 discard region 3547:2940 - contained in read 310405 0- 7104 discard region 5032:7104 - contained in read 499283 1083- 7638 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11927/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11933/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 3847:6149 - contained in read 312341 65- 6149 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11936/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5820:6414 - contained in read 467162 2929- 8386 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11946/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11948/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7856:6304 - contained in read 315289 0- 7077 discard region 7856:6468 - contained in read 315289 0- 7077 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11962/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 10133:12182 - contained in read 421900 2706- 12182 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11964/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2931:3858 - contained in read 14964 9- 8028 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11965/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11978/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5725:6287 - closest read 604105 ( +5725) 0:6287 ( +0) (contained) saved region 5725:6287 - closest 5' read 604105 ( +5725) 0:6287 ( +0) saved region 5725:6287 - closest 3' read 604105 ( +5725) 0:6287 ( +0) search for confused edges: discard region 5725:6287 - no confusion in best edges Annotating repeats in reads for tig 11979/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11981/113047. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5956:10982 - closest read 477876 ( +0) 5956:10982 ( +0) (contained) saved region 5956:10982 - closest 5' read 477876 ( +0) 5956:10982 ( +0) saved region 5956:10982 - closest 3' read 477876 ( +0) 5956:10982 ( +0) search for confused edges: discard region 5956:10982 - no confusion in best edges Annotating repeats in reads for tig 11983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12007/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 5648:8093 - contained in read 470432 1483- 11040 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12011/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12019/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12022/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 561:1177 - contained in read 329086 0- 6598 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12023/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 15216:17628 - contained in read 283912 10715- 18237 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12030/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12033/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12037/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4984:4385 - contained in read 330463 0- 7729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12039/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12067/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7309:7860 - contained in read 615653 6124- 8751 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12073/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8154:9372 - contained in read 289596 33- 10056 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12074/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6549:7658 - contained in read 526551 1463- 8514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12076/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 978:2423 - contained in read 571577 0- 7020 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12084/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 967:419 - contained in read 444420 0- 5338 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12085/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2219:7916 - contained in read 340697 0- 7916 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12103/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:648 - contained in read 229955 0- 7136 discard region 4507:3971 - contained in read 229955 0- 7136 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12122/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12127/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12134/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11506:12327 - contained in read 31985 5947- 12327 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12136/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12137/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12155/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4382:6490 - closest read 267408 ( +1471) 2911:6490 ( +0) (contained) saved region 4382:6490 - closest 5' read 267408 ( +1471) 2911:6490 ( +0) saved region 4382:6490 - closest 3' read 267408 ( +1471) 2911:6490 ( +0) search for confused edges: discard region 4382:6490 - no confusion in best edges Annotating repeats in reads for tig 12157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12160/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 8375:9889 - contained in read 567496 7781- 13644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12167/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12177/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:6097 - contained in read 558444 0- 8475 discard region 8272:8887 - contained in read 445596 5159- 10262 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12183/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8058:9121 - contained in read 621178 4848- 10835 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12205/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12209/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12214/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 0:5355 - contained in read 365908 0- 5971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12215/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12223/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12224/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12230/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12233/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9250:9824 - contained in read 698180 1141- 11913 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12236/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12245/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4697:5973 - contained in read 293989 2- 7149 discard region 10271:11842 - contained in read 687870 6300- 12247 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12258/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7904:8572 - contained in read 97947 5175- 14147 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12271/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12277/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2505:6313 - closest read 575957 ( +2069) 436:6313 ( +0) (contained) saved region 2505:6313 - closest 5' read 575957 ( +2069) 436:6313 ( +0) saved region 2505:6313 - closest 3' read 575957 ( +2069) 436:6313 ( +0) search for confused edges: discard region 2505:6313 - no confusion in best edges Annotating repeats in reads for tig 12279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12287/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12295/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 11557:12157 - contained in read 149200 5264- 15533 discard region 13630:12417 - contained in read 149200 5264- 15533 discard region 13630:12475 - contained in read 149200 5264- 15533 discard region 13630:12741 - contained in read 149200 5264- 15533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12296/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12300/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1193:192 - contained in read 442568 0- 6212 discard region 1697:603 - contained in read 442568 0- 6212 discard region 6457:5088 - contained in read 442568 0- 6212 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12307/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 4532:6262 - contained in read 381168 0- 8464 discard region 6996:8770 - contained in read 152652 587- 8770 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12349/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12366/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8924:12048 - contained in read 390388 7271- 12705 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12368/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5375 - closest read 390488 ( +0) 0:5747 ( +372) (contained) saved region 0:5375 - closest 5' read 390488 ( +0) 0:5747 ( +372) saved region 0:5375 - closest 3' read 390488 ( +0) 0:5747 ( +372) search for confused edges: discard region 0:5375 - no confusion in best edges Annotating repeats in reads for tig 12370/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12392/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2387:8268 - contained in read 643742 174- 9059 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12393/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12394/113047. Annotated with 146 overlaps. Scan reads to discard spanned repeats. discard region 3597:6821 - contained in read 716096 690- 6821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12396/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12407/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12423/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2441:6052 - contained in read 160640 80- 6052 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12424/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12431/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12437/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12441/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7370:6623 - contained in read 404685 0- 7335 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12445/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:1414 - closest read 395990 ( +0) 0:1638 ( +224) (contained) saved region 0:1414 - closest 5' read 395990 ( +0) 0:1638 ( +224) saved region 0:1414 - closest 3' read 395990 ( +0) 0:1638 ( +224) search for confused edges: discard region 0:1414 - no confusion in best edges Annotating repeats in reads for tig 12447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12451/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12844:15102 - contained in read 486789 5957- 15591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12458/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12459/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12462/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12465/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12480/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2386:3494 - contained in read 16644 1354- 6365 discard region 3583:4663 - contained in read 16644 1354- 6365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12481/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3023:5419 - contained in read 98598 14- 6380 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12488/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12497/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 5117:6312 - contained in read 606308 0- 9814 discard region 6630:9814 - contained in read 87315 3929- 15762 discard region 12872:16261 - contained in read 87316 5824- 17585 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12505/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12511/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 13664:14773 - contained in read 108283 10460- 20852 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12533/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12546/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 2395:7161 - contained in read 423172 0- 16084 discard region 14629:14071 - contained in read 423172 0- 16084 discard region 16773:19631 - contained in read 48472 14071- 19631 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12550/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12552/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12561/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4525:6398 - contained in read 377444 0- 7433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12573/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12579/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12580/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 5567:4576 - contained in read 687198 485- 8425 discard region 6799:8425 - contained in read 517576 6206- 13320 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12585/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:3000 - contained in read 430762 0- 6421 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12597/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 8319:9896 - contained in read 480219 4152- 9896 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12613/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9426:11072 - closest read 363718 ( +0) 9426:15900 ( +4828) (contained) saved region 9426:11072 - closest 5' read 363718 ( +0) 9426:15900 ( +4828) saved region 9426:11072 - closest 3' read 363718 ( +0) 9426:15900 ( +4828) search for confused edges: tig 12613 read 48222 pos 4335-11023 IS confused by 5' edge to read 462808 - best edge read 363718 len 1568 erate 0.0326 score 1516.88 - alt edge len 1345 erate 0.0588 score 1265.91 - absdiff 250.97 percdiff 18.0372 tig 12613 read 48222 pos 4335-11023 IS confused by 5' edge to read 462809 - best edge read 363718 len 1568 erate 0.0326 score 1516.88 - alt edge len 1341 erate 0.0612 score 1258.93 - absdiff 257.95 percdiff 18.5857 saved region 9426:11072 - 2 best edges are potentially confused break tig 12613 into up to 3 pieces: 0 8926 unique (length 8926) 8926 11572 repeat (length 2646) 11572 15900 unique (length 4328) Creating Unitig 113989 Creating Unitig 113990 For tig 12613 unique region 0 8926 - 0/ 13 reads repeat/unique - unitig 113989 created. For tig 12613 repeat region 8926 11572 - 0/ 0 repeat/unique reads - no new unitig created. For tig 12613 unique region 11572 15900 - 0/ 6 reads repeat/unique - unitig 113990 created. Annotating repeats in reads for tig 12616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12629/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9052:13833 - closest 5' read 364530 ( +9052) 0:12621 ( -1212) saved region 9052:13833 - closest 3' read 400055 ( -1) 9053:16323 ( +2490) search for confused edges: discard region 9052:13833 - no confusion in best edges Annotating repeats in reads for tig 12636/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7447:9537 - closest read 622495 ( +0) 7447:11477 ( +1940) (contained) saved region 7447:9537 - closest 5' read 622495 ( +0) 7447:11477 ( +1940) saved region 7447:9537 - closest 3' read 622495 ( +0) 7447:11477 ( +1940) search for confused edges: discard region 7447:9537 - no confusion in best edges Annotating repeats in reads for tig 12641/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12650/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12655/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12668/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12704/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5166:4641 - contained in read 450248 0- 5551 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12716/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5468:6194 - contained in read 145356 4089- 8880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12722/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12726/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12729/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12752/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7256:933 - contained in read 249005 0- 9601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12758/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12768/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2825:4145 - contained in read 636449 0- 6747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12770/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 200:1465 - contained in read 459198 0- 8055 discard region 7195:10737 - contained in read 253764 3019- 12089 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12794/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10257:7619 - contained in read 429323 4730- 10711 discard region 11503:8942 - contained in read 429323 4730- 10711 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12795/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12802/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10264:8817 - contained in read 60141 1049- 10268 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12820/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12825/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12831/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 0:4866 - contained in read 328268 0- 5962 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12852/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 9039:12428 - contained in read 472224 3356- 13888 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12858/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12865/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12906/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2098 - contained in read 671792 0- 9396 discard region 6831:4291 - contained in read 671792 0- 9396 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12908/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12913/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12921/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12923/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 92:697 - contained in read 615471 0- 6272 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12926/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11363:12378 - contained in read 663344 5432- 12964 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12944/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12128:13311 - contained in read 569898 5002- 15087 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12946/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12959/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12964/113047. Annotated with 118 overlaps. Scan reads to discard spanned repeats. discard region 1200:8951 - contained in read 9551 605- 14104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12976/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12995/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13002/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:2123 - contained in read 183653 0- 2859 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13010/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13024/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13061/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13074/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 8255:9001 - contained in read 376852 1405- 11172 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13111/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13112/113047. Annotated with 655 overlaps. Scan reads to discard spanned repeats. discard region 10110:15165 - contained in read 514458 7434- 15477 thickest edges to the repeat regions: saved region 4363:5711 - closest 5' read 244231 ( +3267) 1096:5507 ( -204) saved region 4363:5711 - closest 3' read 47240 ( -14) 4377:8330 ( +2619) saved region 6530:9121 - closest 5' read 47239 ( +2099) 4431:8377 ( -744) saved region 6530:9121 - closest 3' read 514459 ( -898) 7428:15476 ( +6355) search for confused edges: tig 13112 read 514459 pos 7428-15476 IS confused by 5' edge to read 599347 - best edge read 47240 len 900 erate 0.0605 score 845.55 - alt edge len 617 erate 0.0601 score 579.92 - absdiff 265.63 percdiff 37.2694 tig 13112 read 514459 pos 7428-15476 IS confused by 5' edge to read 643871 - best edge read 47240 len 900 erate 0.0605 score 845.55 - alt edge len 648 erate 0.0503 score 615.41 - absdiff 230.14 percdiff 31.5060 discard region 4363:5711 - no confusion in best edges saved region 6530:9121 - 2 best edges are potentially confused break tig 13112 into up to 3 pieces: 0 6030 unique (length 6030) 6030 9621 repeat (length 3591) 9621 15477 unique (length 5856) Creating Unitig 113991 Creating Unitig 113992 For tig 13112 unique region 0 6030 - 0/ 8 reads repeat/unique - unitig 113991 created. For tig 13112 repeat region 6030 9621 - 0/ 0 repeat/unique reads - no new unitig created. For tig 13112 unique region 9621 15477 - 0/ 16 reads repeat/unique - unitig 113992 created. Annotating repeats in reads for tig 13128/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13129/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 3291:5595 - contained in read 711607 0- 6275 discard region 6895:5667 - contained in read 711607 0- 6275 thickest edges to the repeat regions: saved region 8395:10848 - closest read 611729 ( +19) 8376:15894 ( +5046) (contained) saved region 8395:10848 - closest read 611728 ( +16) 8379:15884 ( +5036) (contained) saved region 8395:10848 - closest read 611730 ( +7) 8388:15338 ( +4490) (contained) saved region 8395:10848 - closest 5' read 611729 ( +19) 8376:15894 ( +5046) saved region 8395:10848 - closest 3' read 611729 ( +19) 8376:15894 ( +5046) search for confused edges: tig 13129 read 517200 pos 15-10798 IS confused by 3' edge to read 509155 - best edge read 611729 len 2360 erate 0.0665 score 2203.06 - alt edge len 961 erate 0.0395 score 923.04 - absdiff 1280.02 percdiff 81.8924 saved region 8395:10848 - 1 best edges are potentially confused break tig 13129 into up to 3 pieces: 0 7895 unique (length 7895) 7895 11348 repeat (length 3453) 11348 23503 unique (length 12155) Creating Unitig 113993 Creating Unitig 113994 Creating Unitig 113995 For tig 13129 unique region 0 7895 - 0/ 18 reads repeat/unique - unitig 113993 created. For tig 13129 repeat region 7895 11348 - 6/ 0 reads repeat/unique - unitig 113994 created. For tig 13129 unique region 11348 23503 - 0/ 13 reads repeat/unique - unitig 113995 created. Annotating repeats in reads for tig 13136/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11781:12944 - closest read 293533 ( +4180) 7601:13320 ( +376) (contained) saved region 11781:12944 - closest read 293528 ( +4177) 7604:13315 ( +371) (contained) saved region 11781:12944 - closest read 293532 ( +4172) 7609:13304 ( +360) (contained) saved region 11781:12944 - closest read 293529 ( +4163) 7618:13318 ( +374) (contained) saved region 11781:12944 - closest read 293531 ( +4160) 7621:13317 ( +373) (contained) saved region 11781:12944 - closest read 293530 ( +4156) 7625:13321 ( +377) (contained) saved region 11781:12944 - closest read 476772 ( +62) 11719:18000 ( +5056) (contained) saved region 11781:12944 - closest 5' read 476772 ( +62) 11719:18000 ( +5056) saved region 11781:12944 - closest 3' read 293533 ( +4180) 7601:13320 ( +376) search for confused edges: discard region 11781:12944 - no confusion in best edges Annotating repeats in reads for tig 13139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13145/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13162/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 1748:3745 - contained in read 426249 1129- 10531 discard region 6039:6835 - contained in read 426249 1129- 10531 discard region 8787:9682 - contained in read 426249 1129- 10531 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13174/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13192/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6093:9720 - closest read 636611 ( +2395) 3698:9720 ( +0) (contained) saved region 6093:9720 - closest 5' read 636611 ( +2395) 3698:9720 ( +0) saved region 6093:9720 - closest 3' read 636611 ( +2395) 3698:9720 ( +0) search for confused edges: tig 13192 read 528488 pos 7636-14081 IS confused by 5' edge to read 522265 - best edge read 636611 len 2049 erate 0.0675 score 1910.69 - alt edge len 1693 erate 0.0716 score 1571.78 - absdiff 338.91 percdiff 19.4638 saved region 6093:9720 - 1 best edges are potentially confused break tig 13192 into up to 3 pieces: 0 5593 unique (length 5593) 5593 10220 repeat (length 4627) 10220 14086 unique (length 3866) Creating Unitig 113996 Creating Unitig 113997 Creating Unitig 113998 For tig 13192 unique region 0 5593 - 0/ 10 reads repeat/unique - unitig 113996 created. For tig 13192 repeat region 5593 10220 - 5/ 0 reads repeat/unique - unitig 113997 created. For tig 13192 unique region 10220 14086 - 0/ 9 reads repeat/unique - unitig 113998 created. Annotating repeats in reads for tig 13196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13197/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 228:6945 - contained in read 529127 0- 8914 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13199/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13201/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13219/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13221/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7965:9340 - contained in read 292769 190- 11826 discard region 9913:11839 - contained in read 200359 9003- 12010 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13255/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3618:5147 - contained in read 537148 0- 6311 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13286/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13294/113047. Annotated with 93 overlaps. Scan reads to discard spanned repeats. discard region 5298:9844 - contained in read 541884 3291- 11633 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13306/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13339/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10951:13352 - closest 5' read 95241 ( +6381) 4570:12880 ( -472) saved region 10951:13352 - closest 3' read 231980 ( -8) 10959:15458 ( +2106) search for confused edges: tig 13339 read 95243 pos 4510-12878 IS confused by 3' edge to read 511267 - best edge read 231980 len 1907 erate 0.0325 score 1845.02 - alt edge len 1095 erate 0.0356 score 1056.02 - absdiff 789.00 percdiff 54.3946 saved region 10951:13352 - 1 best edges are potentially confused break tig 13339 into up to 3 pieces: 0 10451 unique (length 10451) 10451 13852 repeat (length 3401) 13852 15458 unique (length 1606) Creating Unitig 113999 Creating Unitig 114000 Creating Unitig 114001 For tig 13339 unique region 0 10451 - 0/ 10 reads repeat/unique - unitig 113999 created. For tig 13339 repeat region 10451 13852 - 1/ 0 reads repeat/unique - unitig 114001 created. For tig 13339 unique region 13852 15458 - 0/ 1 reads repeat/unique - unitig 114000 created. Annotating repeats in reads for tig 13358/113047. Annotated with 136 overlaps. Scan reads to discard spanned repeats. discard region 4097:6572 - contained in read 322420 0- 8336 discard region 7615:6579 - contained in read 322420 0- 8336 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13398/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3421:8457 - contained in read 268283 2825- 8457 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13425/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13461/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 4956:6911 - contained in read 84269 817- 10589 discard region 6894:9689 - contained in read 84269 817- 10589 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13480/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13487/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 757:0 - contained in read 572078 0- 5536 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13491/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 8566:11226 - contained in read 346294 110- 11226 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13523/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 11863:16469 - contained in read 286627 9851- 16469 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13524/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2640:5809 - closest read 3331 ( +2604) 36:5809 ( +0) (contained) saved region 2640:5809 - closest 5' read 3331 ( +2604) 36:5809 ( +0) saved region 2640:5809 - closest 3' read 3331 ( +2604) 36:5809 ( +0) search for confused edges: discard region 2640:5809 - no confusion in best edges Annotating repeats in reads for tig 13540/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13549/113047. Annotated with 351 overlaps. Scan reads to discard spanned repeats. discard region 928:6798 - contained in read 461543 91- 9217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13570/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13613/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1161:3501 - contained in read 594936 0- 8172 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13663/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5521:9606 - contained in read 44198 4570- 10972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13666/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8714:7330 - contained in read 602170 17- 8718 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13686/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4414:6157 - contained in read 339499 398- 7639 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13738/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13758/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6685:9823 - closest 5' read 544117 ( +2656) 4029:9822 ( -1) saved region 6685:9823 - closest 3' read 7574 ( -1188) 7873:9840 ( +17) search for confused edges: discard region 6685:9823 - no confusion in best edges Annotating repeats in reads for tig 13762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13781/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6321:11428 - closest 5' read 659088 ( +4004) 2317:10677 ( -751) saved region 6321:11428 - closest 3' read 326992 ( -1283) 7604:11428 ( +0) search for confused edges: discard region 6321:11428 - no confusion in best edges Annotating repeats in reads for tig 13787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13795/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4399:6677 - contained in read 526106 12- 7340 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13815/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13819/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:1449 - contained in read 165448 0- 8894 discard region 2291:5392 - contained in read 165448 0- 8894 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13878/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13893/113047. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 7698:12040 - contained in read 194185 2825- 12359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13895/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 10014:8146 - contained in read 634291 30- 9788 discard region 10231:9139 - contained in read 634291 30- 9788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13903/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13930/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 472:4371 - contained in read 407989 0- 5444 discard region 7434:8587 - contained in read 249683 806- 9270 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13933/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13939/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14692:16861 - closest 5' read 598854 ( +6473) 8219:15735 ( -1126) saved region 14692:16861 - closest 3' read 668167 ( -246) 14938:21259 ( +4398) saved region 16924:21564 - closest read 408959 ( +0) 16924:27800 ( +6236) (contained) saved region 16924:21564 - closest 5' read 408959 ( +0) 16924:27800 ( +6236) saved region 16924:21564 - closest 3' read 408959 ( +0) 16924:27800 ( +6236) search for confused edges: discard region 14692:16861 - no confusion in best edges discard region 16924:21564 - no confusion in best edges Annotating repeats in reads for tig 13944/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 16236:18207 - contained in read 479035 9159- 19636 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13959/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13966/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3914:5903 - contained in read 718562 0- 8433 discard region 7703:8381 - contained in read 499007 2484- 9140 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13974/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2226 - contained in read 646541 0- 6366 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13988/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:983 - contained in read 429605 0- 8475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13998/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6280:7978 - contained in read 446064 1292- 7978 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14010/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14042/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 2576:6600 - contained in read 657936 2- 6600 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14061/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14078/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 1678:81 - contained in read 663201 0- 5950 thickest edges to the repeat regions: saved region 3101:6603 - closest read 550142 ( +438) 2663:6603 ( +0) (contained) saved region 3101:6603 - closest 5' read 550142 ( +438) 2663:6603 ( +0) saved region 3101:6603 - closest 3' read 550142 ( +438) 2663:6603 ( +0) search for confused edges: discard region 3101:6603 - no confusion in best edges Annotating repeats in reads for tig 14099/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5926 - closest read 443926 ( +0) 0:5940 ( +14) (contained) saved region 0:5926 - closest 5' read 443926 ( +0) 0:5940 ( +14) saved region 0:5926 - closest 3' read 443926 ( +0) 0:5940 ( +14) search for confused edges: tig 14099 read 665442 pos 586-9413 NOT confused by 5' edge to read 493057 - best edge read 128068 len 5293 erate 0.0188 score 5193.49 - alt edge len 1635 erate 0.0334 score 1580.39 - absdiff 3613.10 percdiff 106.6774 tig 14099 read 665442 pos 586-9413 NOT confused by 5' edge to read 493058 - best edge read 128068 len 5293 erate 0.0188 score 5193.49 - alt edge len 1649 erate 0.0265 score 1605.30 - absdiff 3588.19 percdiff 105.5537 discard region 0:5926 - no confusion in best edges Annotating repeats in reads for tig 14204/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 11722:15695 - contained in read 49241 7208- 17154 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14212/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14217/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5603:6424 - contained in read 416495 4087- 8580 discard region 8496:6686 - contained in read 416495 4087- 8580 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14223/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14248/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:4289 - contained in read 688006 0- 9739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14251/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3352:7423 - contained in read 283044 1580- 9660 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14266/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4702:5785 - contained in read 247378 1890- 9089 discard region 10675:7702 - contained in read 247378 1890- 9089 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14267/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14274/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:2135 - contained in read 79959 0- 4837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14288/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10608:9497 - contained in read 106565 2529- 10710 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14303/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1339:2964 - closest 5' read 703629 ( +1339) 0:2955 ( -9) saved region 1339:2964 - closest 3' read 701642 ( -338) 1677:5159 ( +2195) search for confused edges: tig 14303 read 701640 pos 1683-7843 IS confused by 5' edge to read 102922 - best edge read 703629 len 1247 erate 0.0607 score 1171.31 - alt edge len 1243 erate 0.0600 score 1168.42 - absdiff 2.89 percdiff 0.2468 tig 14303 read 701640 pos 1683-7843 IS confused by 5' edge to read 334564 - best edge read 703629 len 1247 erate 0.0607 score 1171.31 - alt edge len 964 erate 0.0486 score 917.15 - absdiff 254.16 percdiff 24.3393 tig 14303 read 701640 pos 1683-7843 IS confused by 5' edge to read 515637 - best edge read 703629 len 1247 erate 0.0607 score 1171.31 - alt edge len 1235 erate 0.0692 score 1149.54 - absdiff 21.77 percdiff 1.8760 saved region 1339:2964 - 3 best edges are potentially confused break tig 14303 into up to 3 pieces: 0 839 unique (length 839) 839 3464 repeat (length 2625) 3464 8965 unique (length 5501) Creating Unitig 114002 Creating Unitig 114003 Creating Unitig 114004 For tig 14303 unique region 0 839 - 0/ 1 reads repeat/unique - unitig 114002 created. For tig 14303 repeat region 839 3464 - 12/ 0 reads repeat/unique - unitig 114003 created. For tig 14303 unique region 3464 8965 - 0/ 7 reads repeat/unique - unitig 114004 created. Annotating repeats in reads for tig 14323/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 11018:13070 - contained in read 699998 6804- 15821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14326/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 5818:11456 - contained in read 661943 4034- 13339 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14339/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14344/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:2159 - contained in read 719590 0- 6227 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14419/113047. Annotated with 230 overlaps. Scan reads to discard spanned repeats. discard region 81:4554 - contained in read 715606 0- 6082 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14439/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 2506:6352 - contained in read 77090 138- 6352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14451/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7226:12819 - closest 5' read 532131 ( +2186) 5040:12397 ( -422) saved region 7226:12819 - closest 3' read 644933 ( -15) 7241:14574 ( +1755) search for confused edges: discard region 7226:12819 - no confusion in best edges Annotating repeats in reads for tig 14454/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14471/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6763:7889 - closest read 1454 ( +215) 6548:7889 ( +0) (contained) saved region 6763:7889 - closest 5' read 1454 ( +215) 6548:7889 ( +0) saved region 6763:7889 - closest 3' read 1454 ( +215) 6548:7889 ( +0) search for confused edges: discard region 6763:7889 - no confusion in best edges Annotating repeats in reads for tig 14473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14474/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14478/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14480/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14482/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14486/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5553:7461 - contained in read 120807 0- 15354 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14513/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 14308:13164 - contained in read 117672 6792- 19344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14521/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14523/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14530/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9973:10714 - contained in read 487215 5798- 11657 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14533/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14538/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14542/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14545/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 6488:8511 - contained in read 521274 2648- 10341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14546/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14552/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2573:3683 - contained in read 221043 0- 6981 discard region 4501:5250 - contained in read 221043 0- 6981 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14558/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14566/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 5290:6069 - contained in read 718575 4569- 11412 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14568/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7118:6487 - contained in read 93234 3153- 11073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14569/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14572/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14573/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4324:8196 - contained in read 15582 0- 8196 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14574/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7532:6372 - contained in read 691086 5- 11337 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14575/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14576/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 521:2592 - contained in read 346196 0- 8456 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14579/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14592/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14595/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5821:6587 - closest read 545498 ( +0) 5821:10800 ( +4213) (contained) saved region 5821:6587 - closest 5' read 545498 ( +0) 5821:10800 ( +4213) saved region 5821:6587 - closest 3' read 545498 ( +0) 5821:10800 ( +4213) search for confused edges: discard region 5821:6587 - no confusion in best edges Annotating repeats in reads for tig 14596/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14599/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14602/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14603/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13086:14515 - closest read 356437 ( +8434) 4652:14730 ( +215) (contained) saved region 13086:14515 - closest read 22581 ( +6501) 6585:14768 ( +253) (contained) saved region 13086:14515 - closest read 302102 ( +0) 13086:20005 ( +5490) (contained) saved region 13086:14515 - closest 5' read 302102 ( +0) 13086:20005 ( +5490) saved region 13086:14515 - closest 3' read 356437 ( +8434) 4652:14730 ( +215) search for confused edges: discard region 13086:14515 - no confusion in best edges Annotating repeats in reads for tig 14610/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14614/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 498:1856 - contained in read 20330 0- 5549 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14615/113047. Annotated with 442 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5092:8013 - closest read 145816 ( +0) 5092:11117 ( +3104) (contained) saved region 5092:8013 - closest 5' read 145816 ( +0) 5092:11117 ( +3104) saved region 5092:8013 - closest 3' read 145816 ( +0) 5092:11117 ( +3104) search for confused edges: discard region 5092:8013 - no confusion in best edges Annotating repeats in reads for tig 14616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14617/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 62:640 - contained in read 591184 0- 8356 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14622/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4203:2196 - contained in read 253614 0- 11257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14630/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14634/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2264:2899 - contained in read 51547 944- 9148 thickest edges to the repeat regions: saved region 7655:8667 - closest read 51547 ( +6711) 944:9148 ( +481) (contained) saved region 7655:8667 - closest read 51546 ( +6651) 1004:9151 ( +484) (contained) saved region 7655:8667 - closest read 51545 ( +6613) 1042:8942 ( +275) (contained) saved region 7655:8667 - closest 5' read 51546 ( +6651) 1004:9151 ( +484) saved region 7655:8667 - closest 3' read 51547 ( +6711) 944:9148 ( +481) search for confused edges: discard region 7655:8667 - no confusion in best edges Annotating repeats in reads for tig 14635/113047. Annotated with 113 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2102:18380 - closest 5' read 22754 ( +2102) 0:15014 ( -3366) saved region 2102:18380 - closest 3' read 214538 ( -5988) 8090:18380 ( +0) search for confused edges: tig 14635 read 274367 pos 7091-17685 NOT confused by 3' edge to read 265346 - best edge read 214538 len 8750 erate 0.0437 score 8367.62 - alt edge len 6211 erate 0.0564 score 5860.70 - absdiff 2506.93 percdiff 35.2385 discard region 2102:18380 - no confusion in best edges Annotating repeats in reads for tig 14637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14639/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1664:5533 - closest 5' read 22969 ( +1486) 178:5487 ( -46) saved region 1664:5533 - closest 3' read 244446 ( -461) 2125:5537 ( +4) search for confused edges: discard region 1664:5533 - no confusion in best edges Annotating repeats in reads for tig 14645/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14646/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14649/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14655/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4154:6880 - closest read 714856 ( +0) 4154:10177 ( +3297) (contained) saved region 4154:6880 - closest 5' read 714856 ( +0) 4154:10177 ( +3297) saved region 4154:6880 - closest 3' read 714856 ( +0) 4154:10177 ( +3297) search for confused edges: tig 14655 read 650961 pos 4161-14752 IS confused by 3' edge to read 357299 - best edge read 235514 len 2707 erate 0.0321 score 2620.11 - alt edge len 2704 erate 0.0359 score 2606.93 - absdiff 13.18 percdiff 0.5043 saved region 4154:6880 - 1 best edges are potentially confused break tig 14655 into up to 3 pieces: 0 3654 unique (length 3654) 3654 7380 repeat (length 3726) 7380 14752 unique (length 7372) Creating Unitig 114005 Creating Unitig 114006 Creating Unitig 114007 For tig 14655 unique region 0 3654 - 0/ 9 reads repeat/unique - unitig 114005 created. For tig 14655 repeat region 3654 7380 - 8/ 0 reads repeat/unique - unitig 114007 created. For tig 14655 unique region 7380 14752 - 0/ 5 reads repeat/unique - unitig 114006 created. Annotating repeats in reads for tig 14656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14660/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14678/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1120:3127 - contained in read 26491 0- 5035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14701/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1452:5701 - closest read 510350 ( +1452) 0:5706 ( +5) (contained) saved region 1452:5701 - closest read 510356 ( +1449) 3:5709 ( +8) (contained) saved region 1452:5701 - closest read 510352 ( +1449) 3:5707 ( +6) (contained) saved region 1452:5701 - closest read 510351 ( +1443) 9:5707 ( +6) (contained) saved region 1452:5701 - closest read 510357 ( +1429) 23:5706 ( +5) (contained) saved region 1452:5701 - closest read 653484 ( +0) 1452:5830 ( +129) (contained) saved region 1452:5701 - closest 5' read 653484 ( +0) 1452:5830 ( +129) saved region 1452:5701 - closest 3' read 510350 ( +1452) 0:5706 ( +5) search for confused edges: tig 14701 read 29246 pos 4600-10679 IS confused by 5' edge to read 97208 - best edge read 510350 len 1099 erate 0.0463 score 1048.12 - alt edge len 693 erate 0.0312 score 671.38 - absdiff 376.74 percdiff 43.8196 tig 14701 read 29246 pos 4600-10679 IS confused by 5' edge to read 298023 - best edge read 510350 len 1099 erate 0.0463 score 1048.12 - alt edge len 949 erate 0.0521 score 899.56 - absdiff 148.56 percdiff 15.2550 saved region 1452:5701 - 2 best edges are potentially confused break tig 14701 into up to 3 pieces: 0 952 unique (length 952) 952 6201 repeat (length 5249) 6201 10685 unique (length 4484) Creating Unitig 114008 Creating Unitig 114009 Creating Unitig 114010 For tig 14701 unique region 0 952 - 0/ 7 reads repeat/unique - unitig 114008 created. For tig 14701 repeat region 952 6201 - 2/ 0 reads repeat/unique - unitig 114009 created. For tig 14701 unique region 6201 10685 - 0/ 4 reads repeat/unique - unitig 114010 created. Annotating repeats in reads for tig 14702/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14714/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2437:5796 - closest read 249880 ( +2002) 435:5801 ( +5) (contained) saved region 2437:5796 - closest 5' read 249880 ( +2002) 435:5801 ( +5) saved region 2437:5796 - closest 3' read 249880 ( +2002) 435:5801 ( +5) search for confused edges: discard region 2437:5796 - no confusion in best edges Annotating repeats in reads for tig 14717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14723/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14724/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2593:3349 - contained in read 30024 0- 5916 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14738/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14739/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4943:5671 - contained in read 617570 0- 10432 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14745/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5048:5934 - contained in read 376429 1135- 17045 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14748/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10277:11321 - contained in read 208913 2452- 13278 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14751/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14757/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14758/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 6993:8724 - contained in read 36093 0- 10655 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14765/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7260:10008 - closest read 499690 ( +332) 6928:16324 ( +6316) (contained) saved region 7260:10008 - closest read 701318 ( +67) 7193:13449 ( +3441) (contained) saved region 7260:10008 - closest read 701321 ( +65) 7195:13519 ( +3511) (contained) saved region 7260:10008 - closest read 701320 ( +57) 7203:13564 ( +3556) (contained) saved region 7260:10008 - closest read 701319 ( +53) 7207:13553 ( +3545) (contained) saved region 7260:10008 - closest read 610246 ( +24) 7236:10008 ( +0) (contained) saved region 7260:10008 - closest 5' read 499690 ( +332) 6928:16324 ( +6316) saved region 7260:10008 - closest 3' read 499690 ( +332) 6928:16324 ( +6316) search for confused edges: discard region 7260:10008 - no confusion in best edges Annotating repeats in reads for tig 14767/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14782/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14788/113047. Annotated with 402 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6469:10802 - closest read 260013 ( +227) 6242:10802 ( +0) (contained) saved region 6469:10802 - closest read 214658 ( +136) 6333:10840 ( +38) (contained) saved region 6469:10802 - closest 5' read 214658 ( +136) 6333:10840 ( +38) saved region 6469:10802 - closest 3' read 260013 ( +227) 6242:10802 ( +0) search for confused edges: discard region 6469:10802 - no confusion in best edges Annotating repeats in reads for tig 14790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14797/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6169:7465 - contained in read 304810 1876- 7765 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14799/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14801/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 7525:10208 - contained in read 39691 1784- 11956 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14813/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7607:8655 - contained in read 471682 5324- 8655 thickest edges to the repeat regions: saved region 5324:6007 - closest read 471682 ( +0) 5324:8655 ( +2648) (contained) saved region 5324:6007 - closest 5' read 471682 ( +0) 5324:8655 ( +2648) saved region 5324:6007 - closest 3' read 471682 ( +0) 5324:8655 ( +2648) search for confused edges: tig 14813 read 40638 pos 4-5892 IS confused by 3' edge to read 448552 - best edge read 471682 len 563 erate 0.0533 score 532.99 - alt edge len 559 erate 0.0712 score 519.20 - absdiff 13.79 percdiff 2.6217 saved region 5324:6007 - 1 best edges are potentially confused break tig 14813 into up to 3 pieces: 0 4824 unique (length 4824) 4824 6507 repeat (length 1683) 6507 8655 unique (length 2148) Creating Unitig 114011 Creating Unitig 114012 For tig 14813 unique region 0 4824 - 0/ 6 reads repeat/unique - unitig 114011 created. For tig 14813 repeat region 4824 6507 - 0/ 0 repeat/unique reads - no new unitig created. For tig 14813 unique region 6507 8655 - 0/ 7 reads repeat/unique - unitig 114012 created. Annotating repeats in reads for tig 14814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14816/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3546:7203 - closest read 468468 ( +3546) 0:7328 ( +125) (contained) saved region 3546:7203 - closest read 468467 ( +3531) 15:7319 ( +116) (contained) saved region 3546:7203 - closest read 468466 ( +3485) 61:7323 ( +120) (contained) saved region 3546:7203 - closest read 468469 ( +3437) 109:7317 ( +114) (contained) saved region 3546:7203 - closest read 468471 ( +3051) 495:7324 ( +121) (contained) saved region 3546:7203 - closest 5' read 468468 ( +3546) 0:7328 ( +125) saved region 3546:7203 - closest 3' read 468468 ( +3546) 0:7328 ( +125) search for confused edges: discard region 3546:7203 - no confusion in best edges Annotating repeats in reads for tig 14817/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14825/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4656:6427 - contained in read 599650 591- 8154 discard region 9208:10165 - contained in read 430908 5316- 12797 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14826/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14837/113047. Annotated with 97 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2395:13076 - closest read 492936 ( +2365) 30:13076 ( +0) (contained) saved region 2395:13076 - closest 5' read 492936 ( +2365) 30:13076 ( +0) saved region 2395:13076 - closest 3' read 492936 ( +2365) 30:13076 ( +0) search for confused edges: discard region 2395:13076 - no confusion in best edges Annotating repeats in reads for tig 14838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14847/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:595 - contained in read 45093 0- 4618 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14850/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14857/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14858/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14859/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14862/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14865/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4436:7661 - closest read 513299 ( +2343) 2093:7661 ( +0) (contained) saved region 4436:7661 - closest read 46347 ( +482) 3954:8414 ( +753) (contained) saved region 4436:7661 - closest read 46349 ( +465) 3971:8411 ( +750) (contained) saved region 4436:7661 - closest read 46348 ( +442) 3994:8625 ( +964) (contained) saved region 4436:7661 - closest read 46346 ( +331) 4105:8587 ( +926) (contained) saved region 4436:7661 - closest 5' read 46348 ( +442) 3994:8625 ( +964) saved region 4436:7661 - closest 3' read 513299 ( +2343) 2093:7661 ( +0) search for confused edges: discard region 4436:7661 - no confusion in best edges Annotating repeats in reads for tig 14867/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14870/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3127:4205 - contained in read 387286 0- 8320 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14885/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2721:7414 - closest read 468338 ( +299) 2422:7414 ( +0) (contained) saved region 2721:7414 - closest 5' read 468338 ( +299) 2422:7414 ( +0) saved region 2721:7414 - closest 3' read 468338 ( +299) 2422:7414 ( +0) search for confused edges: discard region 2721:7414 - no confusion in best edges Annotating repeats in reads for tig 14889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14894/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14899/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3550:4170 - contained in read 111928 0- 10760 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14901/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 12153:13875 - contained in read 54937 6207- 14535 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14903/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14913/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14914/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3374:3891 - contained in read 50966 0- 9032 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14915/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14917/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10683:12447 - contained in read 638608 7131- 12447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14921/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14929/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14932/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 206:5157 - contained in read 313352 0- 7572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14933/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14935/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 5109:6317 - contained in read 221981 1647- 6317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14936/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14947/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 2769:4115 - contained in read 123738 23- 7431 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14950/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 8333:12341 - contained in read 285316 5580- 13221 thickest edges to the repeat regions: saved region 2382:3122 - closest read 54412 ( +2382) 0:3547 ( +425) (contained) saved region 2382:3122 - closest read 234461 ( +2031) 351:3122 ( +0) (contained) saved region 2382:3122 - closest read 384591 ( +352) 2030:10489 ( +7367) (contained) saved region 2382:3122 - closest read 384592 ( +27) 2355:10489 ( +7367) (contained) saved region 2382:3122 - closest 5' read 384591 ( +352) 2030:10489 ( +7367) saved region 2382:3122 - closest 3' read 54412 ( +2382) 0:3547 ( +425) search for confused edges: discard region 2382:3122 - no confusion in best edges Annotating repeats in reads for tig 14951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14954/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14955/113047. Annotated with 61 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4970:7946 - closest read 607633 ( +437) 4533:13622 ( +5676) (contained) saved region 4970:7946 - closest read 719695 ( +181) 4789:13788 ( +5842) (contained) saved region 4970:7946 - closest read 719694 ( +163) 4807:13801 ( +5855) (contained) saved region 4970:7946 - closest 5' read 719694 ( +163) 4807:13801 ( +5855) saved region 4970:7946 - closest 3' read 607633 ( +437) 4533:13622 ( +5676) search for confused edges: discard region 4970:7946 - no confusion in best edges Annotating repeats in reads for tig 14960/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14966/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1778:4453 - contained in read 35237 0- 9169 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14971/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14976/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 12232:12780 - contained in read 15320 7825- 14707 thickest edges to the repeat regions: saved region 3964:10442 - closest 5' read 417640 ( +249) 3715:10409 ( -33) saved region 3964:10442 - closest 3' read 216817 ( -3552) 7516:12765 ( +2323) search for confused edges: tig 14976 read 266339 pos 0-10055 IS confused by 3' edge to read 612179 - best edge read 15320 len 2234 erate 0.0719 score 2073.38 - alt edge len 1034 erate 0.0301 score 1002.88 - absdiff 1070.50 percdiff 69.5976 saved region 3964:10442 - 1 best edges are potentially confused break tig 14976 into up to 3 pieces: 0 3464 unique (length 3464) 3464 10942 repeat (length 7478) 10942 15002 unique (length 4060) Creating Unitig 114013 Creating Unitig 114014 Creating Unitig 114015 For tig 14976 unique region 0 3464 - 0/ 12 reads repeat/unique - unitig 114013 created. For tig 14976 repeat region 3464 10942 - 33/ 0 reads repeat/unique - unitig 114014 created. For tig 14976 unique region 10942 15002 - 0/ 12 reads repeat/unique - unitig 114015 created. Annotating repeats in reads for tig 14982/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14995/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15002/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15020/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15029/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15030/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15039/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2994:3669 - contained in read 395083 0- 6433 discard region 5987:5096 - contained in read 395083 0- 6433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15041/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15048/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 1626:2733 - contained in read 437648 854- 5104 discard region 5532:3809 - contained in read 437648 854- 5104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15052/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15058/113047. Annotated with 64 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5211:7891 - closest 5' read 571507 ( +5191) 20:7583 ( -308) saved region 5211:7891 - closest 3' read 175201 ( -105) 5316:9896 ( +2005) search for confused edges: tig 15058 read 65243 pos 0-7413 IS confused by 3' edge to read 147405 - best edge read 175201 len 2085 erate 0.0633 score 1953.02 - alt edge len 1329 erate 0.0384 score 1277.97 - absdiff 675.05 percdiff 41.7862 tig 15058 read 65243 pos 0-7413 IS confused by 3' edge to read 603410 - best edge read 175201 len 2085 erate 0.0633 score 1953.02 - alt edge len 2083 erate 0.0663 score 1944.90 - absdiff 8.12 percdiff 0.4168 tig 15058 read 65243 pos 0-7413 IS confused by 3' edge to read 658700 - best edge read 175201 len 2085 erate 0.0633 score 1953.02 - alt edge len 1228 erate 0.0538 score 1161.93 - absdiff 791.09 percdiff 50.7928 tig 15058 read 65243 pos 0-7413 IS confused by 3' edge to read 694882 - best edge read 175201 len 2085 erate 0.0633 score 1953.02 - alt edge len 1908 erate 0.0500 score 1812.60 - absdiff 140.42 percdiff 7.4580 tig 15058 read 65243 pos 0-7413 IS confused by 3' edge to read 701409 - best edge read 175201 len 2085 erate 0.0633 score 1953.02 - alt edge len 1655 erate 0.0513 score 1570.10 - absdiff 382.92 percdiff 21.7376 saved region 5211:7891 - 5 best edges are potentially confused break tig 15058 into up to 3 pieces: 0 4711 unique (length 4711) 4711 8391 repeat (length 3680) 8391 11210 unique (length 2819) Creating Unitig 114016 Creating Unitig 114017 For tig 15058 unique region 0 4711 - 0/ 7 reads repeat/unique - unitig 114016 created. For tig 15058 repeat region 4711 8391 - 0/ 0 repeat/unique reads - no new unitig created. For tig 15058 unique region 8391 11210 - 0/ 4 reads repeat/unique - unitig 114017 created. Annotating repeats in reads for tig 15064/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9168:10456 - contained in read 548379 4363- 14312 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15070/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15072/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6389:5239 - contained in read 142403 0- 5796 discard region 6394:5241 - contained in read 142403 0- 5796 discard region 6637:5266 - contained in read 142403 0- 5796 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15091/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15102/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 6281:5146 - contained in read 69616 0- 6373 discard region 10103:12395 - contained in read 433518 6745- 14691 thickest edges to the repeat regions: saved region 6709:9506 - closest 5' read 69612 ( +6701) 8:7758 ( -1748) saved region 6709:9506 - closest 3' read 433518 ( -36) 6745:14691 ( +5185) search for confused edges: discard region 6709:9506 - no confusion in best edges Annotating repeats in reads for tig 15106/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4979:5799 - closest read 70053 ( +4874) 105:5799 ( +0) (contained) saved region 4979:5799 - closest 5' read 70053 ( +4874) 105:5799 ( +0) saved region 4979:5799 - closest 3' read 70053 ( +4874) 105:5799 ( +0) search for confused edges: tig 15106 read 647098 pos 5012-12559 IS confused by 5' edge to read 418290 - best edge read 70053 len 757 erate 0.0504 score 718.85 - alt edge len 684 erate 0.0504 score 649.53 - absdiff 69.32 percdiff 10.1319 saved region 4979:5799 - 1 best edges are potentially confused break tig 15106 into up to 3 pieces: 0 4479 unique (length 4479) 4479 6299 repeat (length 1820) 6299 18738 unique (length 12439) Creating Unitig 114018 Creating Unitig 114019 For tig 15106 unique region 0 4479 - 0/ 10 reads repeat/unique - unitig 114018 created. For tig 15106 repeat region 4479 6299 - 0/ 0 repeat/unique reads - no new unitig created. For tig 15106 unique region 6299 18738 - 0/ 10 reads repeat/unique - unitig 114019 created. Annotating repeats in reads for tig 15107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15108/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9954:8422 - contained in read 70136 32- 11068 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15119/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 8005:9290 - contained in read 111903 3711- 11644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15131/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7133:7791 - contained in read 72188 0- 8985 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15132/113047. Annotated with 492 overlaps. Scan reads to discard spanned repeats. discard region 627:4501 - contained in read 72324 0- 5056 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15134/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15136/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15142/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6665:10437 - contained in read 180184 3479- 11735 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15145/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15151/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15170/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15174/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6922:5788 - contained in read 40724 0- 6922 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15180/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15182/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15206/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15209/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15210/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15213/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15217/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15219/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15225/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10250:11397 - contained in read 82434 4283- 14383 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15226/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 0:2238 - contained in read 303756 0- 8113 thickest edges to the repeat regions: saved region 4794:8113 - closest read 303756 ( +4794) 0:8113 ( +0) (contained) saved region 4794:8113 - closest read 303755 ( +4191) 603:8117 ( +4) (contained) saved region 4794:8113 - closest 5' read 303755 ( +4191) 603:8117 ( +4) saved region 4794:8113 - closest 3' read 303756 ( +4794) 0:8113 ( +0) search for confused edges: discard region 4794:8113 - no confusion in best edges Annotating repeats in reads for tig 15228/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 6475:7232 - contained in read 82574 0- 9714 discard region 7289:10901 - contained in read 170508 6614- 13719 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15236/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15244/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 4641:6191 - contained in read 83801 2117- 8283 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15246/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10823:9017 - contained in read 601104 2731- 11983 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15266/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15269/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15273/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15280/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4388:6016 - contained in read 87463 5- 12568 discard region 6198:7300 - contained in read 87463 5- 12568 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15285/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15286/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3972:4532 - contained in read 619342 180- 8379 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15289/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15292/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15298/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4010:5561 - contained in read 72235 2091- 8287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15300/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15304/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15309/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15312/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15330/113047. Annotated with 138 overlaps. Scan reads to discard spanned repeats. discard region 3538:10066 - contained in read 211986 1113- 10748 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15338/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1714:2386 - contained in read 293856 0- 3132 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15343/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 168:3424 - contained in read 466925 0- 6403 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15346/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 173:2779 - closest read 93656 ( +173) 0:3153 ( +374) (contained) saved region 173:2779 - closest read 82486 ( +0) 173:2779 ( +0) (contained) saved region 173:2779 - closest 5' read 93656 ( +173) 0:3153 ( +374) saved region 173:2779 - closest 3' read 93656 ( +173) 0:3153 ( +374) search for confused edges: discard region 173:2779 - no confusion in best edges Annotating repeats in reads for tig 15347/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5680:6505 - closest read 93695 ( +5670) 10:6505 ( +0) (contained) saved region 5680:6505 - closest read 93700 ( +5666) 14:6505 ( +0) (contained) saved region 5680:6505 - closest 5' read 93695 ( +5670) 10:6505 ( +0) saved region 5680:6505 - closest 3' read 93695 ( +5670) 10:6505 ( +0) search for confused edges: discard region 5680:6505 - no confusion in best edges Annotating repeats in reads for tig 15350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15363/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 509:1786 - closest read 403110 ( +0) 509:7790 ( +6004) (contained) saved region 509:1786 - closest 5' read 403110 ( +0) 509:7790 ( +6004) saved region 509:1786 - closest 3' read 403110 ( +0) 509:7790 ( +6004) saved region 10312:13283 - closest 5' read 97688 ( +4302) 6010:12581 ( -702) saved region 10312:13283 - closest 3' read 186882 ( -199) 10511:16672 ( +3389) search for confused edges: tig 15363 read 95300 pos 0-1780 IS confused by 3' edge to read 361367 - best edge read 403110 len 1264 erate 0.0462 score 1205.60 - alt edge len 900 erate 0.0618 score 844.38 - absdiff 361.22 percdiff 35.2416 saved region 509:1786 - 1 best edges are potentially confused discard region 10312:13283 - no confusion in best edges break tig 15363 into up to 3 pieces: 0 9 unique (length 9) 9 2286 repeat (length 2277) 2286 16672 unique (length 14386) Creating Unitig 114020 Creating Unitig 114021 Creating Unitig 114022 For tig 15363 unique region 0 9 - 0/ 1 reads repeat/unique - unitig 114020 created. For tig 15363 repeat region 9 2286 - 1/ 0 reads repeat/unique - unitig 114022 created. For tig 15363 unique region 2286 16672 - 0/ 16 reads repeat/unique - unitig 114021 created. Annotating repeats in reads for tig 15366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15381/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1689:2475 - contained in read 97102 0- 5085 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15387/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15388/113047. Annotated with 704 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:15932 - closest 5' read 662387 ( +0) 0:14797 ( -1135) saved region 0:15932 - closest 3' read 295060 ( -1042) 1042:17894 ( +1962) search for confused edges: discard region 0:15932 - no confusion in best edges Annotating repeats in reads for tig 15392/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15396/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15399/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7335:6172 - contained in read 651803 0- 12267 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15406/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15408/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15412/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15424/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15429/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15438/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15439/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1277:2116 - contained in read 336630 0- 5016 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15451/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15454/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15458/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15462/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15465/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15466/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8723:9829 - contained in read 66242 5473- 18457 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15467/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8023:7251 - contained in read 573345 2746- 14284 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15474/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15475/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 12884:14384 - contained in read 612580 20- 15304 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15477/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4878:4232 - contained in read 108934 0- 12926 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15479/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7427:8033 - closest read 109008 ( +32) 7395:18058 (+10025) (contained) saved region 7427:8033 - closest read 356268 ( +0) 7427:14743 ( +6710) (contained) saved region 7427:8033 - closest read 356272 ( +0) 7427:14741 ( +6708) (contained) saved region 7427:8033 - closest 5' read 109008 ( +32) 7395:18058 (+10025) saved region 7427:8033 - closest 3' read 109008 ( +32) 7395:18058 (+10025) search for confused edges: discard region 7427:8033 - no confusion in best edges Annotating repeats in reads for tig 15480/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15486/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 10008:12479 - contained in read 180181 6711- 14220 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15494/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15510/113047. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 1073:3426 - contained in read 616004 0- 10870 discard region 6925:10593 - contained in read 206579 203- 11189 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15518/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 17202:18030 - contained in read 617145 3782- 20972 thickest edges to the repeat regions: saved region 4082:5520 - closest read 469797 ( +4082) 0:5927 ( +407) (contained) saved region 4082:5520 - closest read 469798 ( +4066) 16:5925 ( +405) (contained) saved region 4082:5520 - closest read 617145 ( +300) 3782:20972 (+15452) (contained) saved region 4082:5520 - closest 5' read 617145 ( +300) 3782:20972 (+15452) saved region 4082:5520 - closest 3' read 469797 ( +4082) 0:5927 ( +407) search for confused edges: discard region 4082:5520 - no confusion in best edges Annotating repeats in reads for tig 15527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15534/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15542/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15549/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15551/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3860:4642 - contained in read 345111 0- 6551 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15555/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4294:9465 - closest read 214652 ( +42) 4252:11413 ( +1948) (contained) saved region 4294:9465 - closest 5' read 214652 ( +42) 4252:11413 ( +1948) saved region 4294:9465 - closest 3' read 214652 ( +42) 4252:11413 ( +1948) search for confused edges: discard region 4294:9465 - no confusion in best edges Annotating repeats in reads for tig 15562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15569/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15573/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15576/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15585/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15599/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 8832:9543 - contained in read 717662 2986- 11039 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15604/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15612/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15614/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15625/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15640/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 5148:6294 - contained in read 126970 2610- 6724 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15648/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4123:6777 - closest read 460956 ( +11) 4112:6777 ( +0) (contained) saved region 4123:6777 - closest 5' read 460956 ( +11) 4112:6777 ( +0) saved region 4123:6777 - closest 3' read 460956 ( +11) 4112:6777 ( +0) saved region 11391:12070 - closest read 97484 ( +6849) 4542:12070 ( +0) (contained) saved region 11391:12070 - closest 5' read 97484 ( +6849) 4542:12070 ( +0) saved region 11391:12070 - closest 3' read 97484 ( +6849) 4542:12070 ( +0) search for confused edges: tig 15648 read 272723 pos 1187-6771 IS confused by 3' edge to read 622606 - best edge read 97486 len 2233 erate 0.0215 score 2184.99 - alt edge len 1664 erate 0.0626 score 1559.83 - absdiff 625.16 percdiff 33.3878 tig 15648 read 97486 pos 4499-12068 IS confused by 5' edge to read 234031 - best edge read 409996 len 671 erate 0.0640 score 628.06 - alt edge len 553 erate 0.0651 score 517.00 - absdiff 111.06 percdiff 19.3975 tig 15648 read 97486 pos 4499-12068 IS confused by 5' edge to read 456961 - best edge read 409996 len 671 erate 0.0640 score 628.06 - alt edge len 610 erate 0.0397 score 585.78 - absdiff 42.27 percdiff 6.9652 tig 15648 read 97486 pos 4499-12068 IS confused by 5' edge to read 481635 - best edge read 409996 len 671 erate 0.0640 score 628.06 - alt edge len 623 erate 0.0563 score 587.93 - absdiff 40.13 percdiff 6.6006 tig 15648 read 97486 pos 4499-12068 IS confused by 5' edge to read 481641 - best edge read 409996 len 671 erate 0.0640 score 628.06 - alt edge len 625 erate 0.0548 score 590.75 - absdiff 37.31 percdiff 6.1217 saved region 4123:6777 - 1 best edges are potentially confused saved region 11391:12070 - 4 best edges are potentially confused break tig 15648 into up to 5 pieces: 0 3623 unique (length 3623) 3623 7277 repeat (length 3654) 7277 10891 unique (length 3614) 10891 12570 repeat (length 1679) 12570 17861 unique (length 5291) Creating Unitig 114023 Creating Unitig 114024 Creating Unitig 114025 Creating Unitig 114026 For tig 15648 unique region 0 3623 - 0/ 7 reads repeat/unique - unitig 114023 created. For tig 15648 repeat region 3623 7277 - 3/ 0 reads repeat/unique - unitig 114024 created. For tig 15648 unique region 7277 10891 - 0/ 8 reads repeat/unique - unitig 114025 created. For tig 15648 repeat region 10891 12570 - 0/ 0 repeat/unique reads - no new unitig created. For tig 15648 unique region 12570 17861 - 0/ 3 reads repeat/unique - unitig 114026 created. Annotating repeats in reads for tig 15650/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1771:4181 - contained in read 384529 0- 4993 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15655/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15674/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15676/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 7252:11813 - contained in read 199201 4049- 12788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15687/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5714:6412 - contained in read 379824 35- 7788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15697/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2304:3857 - contained in read 134235 0- 5721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15708/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15709/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15714/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15716/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15728/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 2541:6232 - contained in read 326757 0- 9081 discard region 7726:8297 - contained in read 326757 0- 9081 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15730/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 928:5462 - contained in read 137968 0- 9481 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15746/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 8313:15390 - contained in read 443718 6272- 15390 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15758/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15767/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 849:7 - contained in read 432961 0- 8427 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15768/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15769/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 10342:16301 - contained in read 626228 5491- 18264 thickest edges to the repeat regions: saved region 5491:7419 - closest read 626228 ( +0) 5491:18264 (+10845) (contained) saved region 5491:7419 - closest 5' read 626228 ( +0) 5491:18264 (+10845) saved region 5491:7419 - closest 3' read 626228 ( +0) 5491:18264 (+10845) search for confused edges: discard region 5491:7419 - no confusion in best edges Annotating repeats in reads for tig 15770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15771/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15775/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 4208:7531 - contained in read 321502 2832- 9921 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15776/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3961:8268 - closest read 721364 ( +0) 3961:8268 ( +0) (contained) saved region 3961:8268 - closest 5' read 721364 ( +0) 3961:8268 ( +0) saved region 3961:8268 - closest 3' read 721364 ( +0) 3961:8268 ( +0) search for confused edges: tig 15776 read 217350 pos 1067-7868 NOT confused by 3' edge to read 130322 - best edge read 721364 len 3813 erate 0.0661 score 3560.96 - alt edge len 899 erate 0.0404 score 862.68 - absdiff 2698.28 percdiff 121.9936 tig 15776 read 142458 pos 4579-13383 IS confused by 5' edge to read 611355 - best edge read 721364 len 3643 erate 0.0235 score 3557.39 - alt edge len 3165 erate 0.0254 score 3084.61 - absdiff 472.78 percdiff 14.2361 tig 15776 read 142458 pos 4579-13383 IS confused by 5' edge to read 611356 - best edge read 721364 len 3643 erate 0.0235 score 3557.39 - alt edge len 3150 erate 0.0371 score 3033.13 - absdiff 524.25 percdiff 15.9093 saved region 3961:8268 - 2 best edges are potentially confused break tig 15776 into up to 3 pieces: 0 3461 unique (length 3461) 3461 8768 repeat (length 5307) 8768 13383 unique (length 4615) Creating Unitig 114027 Creating Unitig 114028 Creating Unitig 114029 For tig 15776 unique region 0 3461 - 0/ 7 reads repeat/unique - unitig 114027 created. For tig 15776 repeat region 3461 8768 - 9/ 0 reads repeat/unique - unitig 114028 created. For tig 15776 unique region 8768 13383 - 0/ 1 reads repeat/unique - unitig 114029 created. Annotating repeats in reads for tig 15777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15781/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3462:4618 - contained in read 264517 3- 6124 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15792/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 10119:12621 - contained in read 485657 4068- 13776 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15808/113047. Annotated with 400 overlaps. Scan reads to discard spanned repeats. discard region 2713:4159 - contained in read 309416 0- 5658 thickest edges to the repeat regions: saved region 4507:10243 - closest read 320174 ( +0) 4507:10243 ( +0) (contained) saved region 4507:10243 - closest 5' read 320174 ( +0) 4507:10243 ( +0) saved region 4507:10243 - closest 3' read 320174 ( +0) 4507:10243 ( +0) search for confused edges: tig 15808 read 99845 pos 1993-9200 IS confused by 3' edge to read 13050 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 1986 erate 0.0693 score 1848.37 - absdiff 1527.07 percdiff 58.4658 tig 15808 read 99845 pos 1993-9200 IS confused by 3' edge to read 23602 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 2931 erate 0.0653 score 2739.61 - absdiff 635.84 percdiff 20.7958 tig 15808 read 99845 pos 1993-9200 IS confused by 3' edge to read 234449 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 1777 erate 0.0709 score 1651.01 - absdiff 1724.43 percdiff 68.6142 tig 15808 read 99845 pos 1993-9200 IS confused by 3' edge to read 263519 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 1850 erate 0.0689 score 1722.54 - absdiff 1652.91 percdiff 64.8456 tig 15808 read 99845 pos 1993-9200 NOT confused by 3' edge to read 352183 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 733 erate 0.0675 score 683.52 - absdiff 2691.92 percdiff 132.6407 tig 15808 read 99845 pos 1993-9200 IS confused by 3' edge to read 358669 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 1760 erate 0.0712 score 1634.69 - absdiff 1740.75 percdiff 69.4894 tig 15808 read 99845 pos 1993-9200 NOT confused by 3' edge to read 586441 - best edge read 542982 len 3619 erate 0.0673 score 3375.44 - alt edge len 1240 erate 0.0678 score 1155.93 - absdiff 2219.51 percdiff 97.9621 tig 15808 read 542982 pos 5536-14013 IS confused by 3' edge to read 20945 - best edge read 99845 len 3566 erate 0.0673 score 3326.01 - alt edge len 2743 erate 0.0700 score 2550.99 - absdiff 775.02 percdiff 26.3746 tig 15808 read 542982 pos 5536-14013 IS confused by 3' edge to read 45793 - best edge read 99845 len 3566 erate 0.0673 score 3326.01 - alt edge len 1805 erate 0.0693 score 1679.91 - absdiff 1646.09 percdiff 65.7659 tig 15808 read 542982 pos 5536-14013 IS confused by 3' edge to read 161384 - best edge read 99845 len 3566 erate 0.0673 score 3326.01 - alt edge len 2677 erate 0.0647 score 2503.80 - absdiff 822.21 percdiff 28.2071 tig 15808 read 542982 pos 5536-14013 NOT confused by 3' edge to read 185653 - best edge read 99845 len 3566 erate 0.0673 score 3326.01 - alt edge len 737 erate 0.0735 score 682.83 - absdiff 2643.18 percdiff 131.8675 saved region 4507:10243 - 8 best edges are potentially confused break tig 15808 into up to 3 pieces: 0 4007 unique (length 4007) 4007 10743 repeat (length 6736) 10743 15254 unique (length 4511) Creating Unitig 114030 Creating Unitig 114031 Creating Unitig 114032 For tig 15808 unique region 0 4007 - 0/ 8 reads repeat/unique - unitig 114030 created. For tig 15808 repeat region 4007 10743 - 35/ 0 reads repeat/unique - unitig 114031 created. For tig 15808 unique region 10743 15254 - 0/ 2 reads repeat/unique - unitig 114032 created. Annotating repeats in reads for tig 15811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15813/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 2902:4659 - contained in read 146242 0- 7631 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15817/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2275:3910 - contained in read 247719 0- 5692 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15825/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15826/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7101:7627 - contained in read 334532 2413- 13595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15831/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15837/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 0:954 - contained in read 149913 0- 5967 discard region 5141:8714 - contained in read 589615 2518- 10041 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15846/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1308:1849 - contained in read 151884 0- 5431 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15848/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15850/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:2296 - contained in read 394816 0- 8320 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15858/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15862/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15863/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15867/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15874/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15875/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15879/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15884/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:1658 - contained in read 147873 0- 6590 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15891/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15895/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15897/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15903/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15908/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10133:9525 - contained in read 680290 3852- 10700 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15921/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5379:6266 - contained in read 659183 1138- 11586 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15923/113047. Annotated with 484 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4699:14506 - closest 5' read 597812 ( +4699) 0:6419 ( -8087) saved region 4699:14506 - closest 3' read 161542 ( -6019) 10718:15399 ( +893) search for confused edges: tig 15923 read 161542 pos 10718-15399 IS confused by 5' edge to read 128445 - best edge read 281748 len 3047 erate 0.0646 score 2850.16 - alt edge len 1955 erate 0.0670 score 1824.02 - absdiff 1026.15 percdiff 43.9071 tig 15923 read 161542 pos 10718-15399 IS confused by 5' edge to read 312481 - best edge read 281748 len 3047 erate 0.0646 score 2850.16 - alt edge len 1120 erate 0.0452 score 1069.38 - absdiff 1780.79 percdiff 90.8672 tig 15923 read 161542 pos 10718-15399 IS confused by 5' edge to read 312484 - best edge read 281748 len 3047 erate 0.0646 score 2850.16 - alt edge len 1115 erate 0.0483 score 1061.15 - absdiff 1789.02 percdiff 91.4793 tig 15923 read 161542 pos 10718-15399 IS confused by 5' edge to read 446299 - best edge read 281748 len 3047 erate 0.0646 score 2850.16 - alt edge len 1669 erate 0.0673 score 1556.68 - absdiff 1293.49 percdiff 58.7036 tig 15923 read 161542 pos 10718-15399 IS confused by 5' edge to read 625831 - best edge read 281748 len 3047 erate 0.0646 score 2850.16 - alt edge len 1053 erate 0.0393 score 1011.62 - absdiff 1838.55 percdiff 95.2176 tig 15923 read 161542 pos 10718-15399 IS confused by 5' edge to read 659098 - best edge read 281748 len 3047 erate 0.0646 score 2850.16 - alt edge len 2270 erate 0.0736 score 2102.93 - absdiff 747.24 percdiff 30.1725 saved region 4699:14506 - 6 best edges are potentially confused break tig 15923 into up to 3 pieces: 0 4199 unique (length 4199) 4199 15006 repeat (length 10807) 15006 15399 unique (length 393) Creating Unitig 114033 Creating Unitig 114034 Creating Unitig 114035 For tig 15923 unique region 0 4199 - 0/ 2 reads repeat/unique - unitig 114033 created. For tig 15923 repeat region 4199 15006 - 32/ 0 reads repeat/unique - unitig 114034 created. For tig 15923 unique region 15006 15399 - 0/ 2 reads repeat/unique - unitig 114035 created. Annotating repeats in reads for tig 15926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15927/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15930/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15935/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2369:3661 - contained in read 557024 0- 11250 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15936/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15947/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4769:7102 - contained in read 16932 716- 7615 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15958/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15965/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15967/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15971/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15989/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15991/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9623:6314 - contained in read 607089 1019- 9338 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15996/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16007/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16008/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2805:7014 - closest 5' read 170867 ( +2555) 250:5430 ( -1584) saved region 2805:7014 - closest 3' read 664900 ( -242) 3047:8242 ( +1228) search for confused edges: discard region 2805:7014 - no confusion in best edges Annotating repeats in reads for tig 16010/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16011/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16012/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11772:8553 - contained in read 104421 2272- 11329 discard region 11772:8696 - contained in read 104421 2272- 11329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16013/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 3927:5577 - contained in read 351332 3151- 8891 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16014/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16019/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16032/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 1249:4688 - contained in read 331800 9- 4688 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16052/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16059/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5513:6980 - closest read 4306 ( +4517) 996:6980 ( +0) (contained) saved region 5513:6980 - closest read 147346 ( +239) 5274:10151 ( +3171) (contained) saved region 5513:6980 - closest 5' read 147346 ( +239) 5274:10151 ( +3171) saved region 5513:6980 - closest 3' read 4306 ( +4517) 996:6980 ( +0) search for confused edges: discard region 5513:6980 - no confusion in best edges Annotating repeats in reads for tig 16061/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16084/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16085/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16086/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16091/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 0:3509 - contained in read 181165 0- 7196 discard region 8768:10997 - contained in read 506443 1607- 10997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16105/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16113/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5493:6591 - contained in read 443431 160- 10364 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16126/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16130/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1318:2499 - contained in read 256731 0- 5342 discard region 2639:3189 - contained in read 256731 0- 5342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16136/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16162/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14715 - closest 5' read 190293 ( +0) 0:4340 (-10375) saved region 0:14715 - closest 3' read 696372 ( -3500) 3500:18141 ( +3426) search for confused edges: discard region 0:14715 - no confusion in best edges Annotating repeats in reads for tig 16163/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 1891:3638 - contained in read 700008 0- 5979 discard region 5805:3826 - contained in read 700008 0- 5979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16164/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16166/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 3648:5807 - contained in read 357795 22- 5807 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16182/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16199/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16201/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16202/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16204/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16209/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2589:0 - contained in read 180947 0- 9900 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16212/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16218/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4876:6481 - contained in read 195951 124- 8191 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16219/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16236/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16239/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16258/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2957:5060 - contained in read 381739 38- 7888 discard region 6218:8277 - contained in read 665130 2957- 9911 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16266/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8637:6791 - contained in read 333484 2071- 13401 thickest edges to the repeat regions: saved region 1875:3048 - closest read 201209 ( +1875) 0:3275 ( +227) (contained) saved region 1875:3048 - closest read 574590 ( +60) 1815:3513 ( +465) (contained) saved region 1875:3048 - closest 5' read 574590 ( +60) 1815:3513 ( +465) saved region 1875:3048 - closest 3' read 201209 ( +1875) 0:3275 ( +227) search for confused edges: discard region 1875:3048 - no confusion in best edges Annotating repeats in reads for tig 16268/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2778:13001 - closest 5' read 201567 ( +2776) 2:6532 ( -6469) saved region 2778:13001 - closest 3' read 522422 ( -2850) 5628:13001 ( +0) search for confused edges: tig 16268 read 201567 pos 2-6532 IS confused by 5' edge to read 487304 - best edge read 522422 len 905 erate 0.0589 score 851.70 - alt edge len 635 erate 0.0646 score 593.98 - absdiff 257.72 percdiff 35.6535 saved region 2778:13001 - 1 best edges are potentially confused break tig 16268 into up to 2 pieces: 0 2278 unique (length 2278) 2278 13001 repeat (length 10723) Creating Unitig 114036 Creating Unitig 114037 For tig 16268 unique region 0 2278 - 0/ 7 reads repeat/unique - unitig 114036 created. For tig 16268 repeat region 2278 13001 - 5/ 0 reads repeat/unique - unitig 114037 created. Annotating repeats in reads for tig 16271/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16280/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16284/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16292/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16328/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2625:1442 - contained in read 215011 0- 7399 discard region 6979:11508 - contained in read 568979 5592- 12059 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16336/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16341/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16349/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4462:1947 - contained in read 628353 0- 5577 discard region 4462:1948 - contained in read 628353 0- 5577 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16352/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16354/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8379:10778 - contained in read 715749 6444- 12230 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16361/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12060:10117 - contained in read 288066 8576- 12060 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16365/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16370/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16372/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16384/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16391/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3086:5343 - contained in read 72534 839- 8739 discard region 5728:7235 - contained in read 72534 839- 8739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16395/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16398/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 11523:17315 - contained in read 589025 5252- 18214 thickest edges to the repeat regions: saved region 5388:5964 - closest read 332844 ( +5379) 9:5964 ( +0) (contained) saved region 5388:5964 - closest read 589025 ( +136) 5252:18214 (+12250) (contained) saved region 5388:5964 - closest read 589026 ( +126) 5262:18199 (+12235) (contained) saved region 5388:5964 - closest 5' read 589025 ( +136) 5252:18214 (+12250) saved region 5388:5964 - closest 3' read 332844 ( +5379) 9:5964 ( +0) search for confused edges: discard region 5388:5964 - no confusion in best edges Annotating repeats in reads for tig 16399/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16403/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 3864:5022 - contained in read 258837 1910- 8231 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16406/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 1529:5551 - contained in read 706323 0- 6058 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16417/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 3656:6641 - contained in read 209004 1468- 8165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16418/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16422/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 303:8702 - contained in read 222963 0- 9386 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16429/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4622:2068 - contained in read 494100 0- 3243 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16439/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16441/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 9484:11656 - contained in read 149490 1585- 11656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16470/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 4628:7147 - contained in read 697899 411- 12076 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16475/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16480/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16488/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5489:10011 - contained in read 229443 259- 10033 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16494/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16501/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:6000 - contained in read 305528 0- 6721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16505/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16509/113047. Annotated with 443 overlaps. Scan reads to discard spanned repeats. discard region 10150:10971 - contained in read 168136 4937- 12662 thickest edges to the repeat regions: saved region 4630:7557 - closest 5' read 231298 ( +1495) 3135:5985 ( -1572) saved region 4630:7557 - closest 3' read 168136 ( -307) 4937:12662 ( +5105) search for confused edges: tig 16509 read 231296 pos 2851-5953 IS confused by 5' edge to read 226111 - best edge read 168136 len 1011 erate 0.0569 score 953.47 - alt edge len 866 erate 0.0325 score 837.86 - absdiff 115.62 percdiff 12.9088 tig 16509 read 231296 pos 2851-5953 IS confused by 5' edge to read 650618 - best edge read 168136 len 1011 erate 0.0569 score 953.47 - alt edge len 761 erate 0.0634 score 712.75 - absdiff 240.72 percdiff 28.8942 saved region 4630:7557 - 2 best edges are potentially confused break tig 16509 into up to 3 pieces: 0 4130 unique (length 4130) 4130 8057 repeat (length 3927) 8057 12676 unique (length 4619) Creating Unitig 114038 Creating Unitig 114039 Creating Unitig 114040 For tig 16509 unique region 0 4130 - 0/ 5 reads repeat/unique - unitig 114038 created. For tig 16509 repeat region 4130 8057 - 1/ 0 reads repeat/unique - unitig 114040 created. For tig 16509 unique region 8057 12676 - 0/ 11 reads repeat/unique - unitig 114039 created. Annotating repeats in reads for tig 16510/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 8008:9623 - contained in read 607668 1272- 10954 thickest edges to the repeat regions: saved region 1260:3767 - closest read 215400 ( +396) 864:3767 ( +0) (contained) saved region 1260:3767 - closest 5' read 215400 ( +396) 864:3767 ( +0) saved region 1260:3767 - closest 3' read 215400 ( +396) 864:3767 ( +0) search for confused edges: discard region 1260:3767 - no confusion in best edges Annotating repeats in reads for tig 16511/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16513/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16515/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16516/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 6449:12973 - contained in read 712295 3788- 13661 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16520/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:637 - contained in read 232927 0- 5880 discard region 1424:3041 - contained in read 232927 0- 5880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16524/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 5235:4575 - contained in read 319926 0- 10880 discard region 10294:10880 - contained in read 386107 4414- 12072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16531/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3106:2545 - contained in read 327950 0- 7945 discard region 3749:4320 - contained in read 327950 0- 7945 discard region 4585:5789 - contained in read 327950 0- 7945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16533/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16538/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3412:5282 - contained in read 234682 0- 7571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16548/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 7227:9628 - contained in read 460854 0- 9628 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16550/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7175:5798 - contained in read 521141 0- 7170 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16555/113047. Annotated with 499 overlaps. Scan reads to discard spanned repeats. discard region 1870:1114 - contained in read 236224 0- 5921 thickest edges to the repeat regions: saved region 3116:8920 - closest 5' read 263262 ( +0) 3116:8444 ( -476) saved region 3116:8920 - closest 3' read 279028 ( -857) 3973:8920 ( +0) search for confused edges: tig 16555 read 236227 pos 86-6127 IS confused by 5' edge to read 16358 - best edge read 279028 len 2143 erate 0.0552 score 2024.71 - alt edge len 883 erate 0.0409 score 846.89 - absdiff 1177.82 percdiff 82.0326 tig 16555 read 236227 pos 86-6127 IS confused by 5' edge to read 69514 - best edge read 279028 len 2143 erate 0.0552 score 2024.71 - alt edge len 591 erate 0.0509 score 560.92 - absdiff 1463.79 percdiff 113.2251 tig 16555 read 236227 pos 86-6127 IS confused by 5' edge to read 86124 - best edge read 279028 len 2143 erate 0.0552 score 2024.71 - alt edge len 1067 erate 0.0629 score 999.89 - absdiff 1024.82 percdiff 67.7659 tig 16555 read 236227 pos 86-6127 IS confused by 5' edge to read 478039 - best edge read 279028 len 2143 erate 0.0552 score 2024.71 - alt edge len 615 erate 0.0555 score 580.87 - absdiff 1443.84 percdiff 110.8269 tig 16555 read 236227 pos 86-6127 IS confused by 5' edge to read 556591 - best edge read 279028 len 2143 erate 0.0552 score 2024.71 - alt edge len 906 erate 0.0497 score 860.97 - absdiff 1163.73 percdiff 80.6559 tig 16555 read 236227 pos 86-6127 IS confused by 5' edge to read 628000 - best edge read 279028 len 2143 erate 0.0552 score 2024.71 - alt edge len 538 erate 0.0504 score 510.88 - absdiff 1513.82 percdiff 119.4058 saved region 3116:8920 - 6 best edges are potentially confused break tig 16555 into up to 2 pieces: 0 2616 unique (length 2616) 2616 8920 repeat (length 6304) Creating Unitig 114041 Creating Unitig 114042 For tig 16555 unique region 0 2616 - 0/ 5 reads repeat/unique - unitig 114041 created. For tig 16555 repeat region 2616 8920 - 4/ 0 reads repeat/unique - unitig 114042 created. Annotating repeats in reads for tig 16557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16558/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16561/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16568/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16573/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16578/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16585/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16603/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:3398 - contained in read 81982 0- 7631 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16607/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16630/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6748:7821 - closest read 131593 ( +2169) 4579:7942 ( +121) (contained) saved region 6748:7821 - closest 5' read 131593 ( +2169) 4579:7942 ( +121) saved region 6748:7821 - closest 3' read 131593 ( +2169) 4579:7942 ( +121) search for confused edges: discard region 6748:7821 - no confusion in best edges Annotating repeats in reads for tig 16631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16640/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16641/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:3484 - contained in read 244445 0- 5540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16647/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1574:3595 - contained in read 643280 0- 6612 discard region 14716:16090 - contained in read 527898 4676- 30731 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16648/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 1876:6149 - contained in read 245298 0- 6671 discard region 6110:6938 - contained in read 531475 3058- 11583 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16658/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6160:6765 - contained in read 248633 0- 7061 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16660/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16700/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5377:7972 - contained in read 335298 88- 10325 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16717/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5039:3807 - contained in read 255594 0- 5801 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16719/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 0:4573 - contained in read 486205 0- 6182 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16723/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16726/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16737/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 6603:9226 - contained in read 258319 0- 11551 discard region 9275:13137 - contained in read 183642 8641- 13137 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16743/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1519:897 - contained in read 259048 0- 2853 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16746/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16761/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16764/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 3406:4912 - contained in read 72109 595- 9153 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16767/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4190:6363 - contained in read 614710 1589- 9242 discard region 9283:8306 - contained in read 614710 1589- 9242 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16772/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7247:8402 - contained in read 261863 6740- 8402 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16782/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16784/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 7472:6427 - contained in read 101499 5234- 9556 discard region 8605:9556 - contained in read 101499 5234- 9556 thickest edges to the repeat regions: saved region 5444:6009 - closest read 262578 ( +5389) 55:6009 ( +0) (contained) saved region 5444:6009 - closest read 101499 ( +210) 5234:9556 ( +3547) (contained) saved region 5444:6009 - closest read 101500 ( +209) 5235:9301 ( +3292) (contained) saved region 5444:6009 - closest read 101502 ( +208) 5236:9301 ( +3292) (contained) saved region 5444:6009 - closest read 101498 ( +207) 5237:9343 ( +3334) (contained) saved region 5444:6009 - closest read 101497 ( +143) 5301:9547 ( +3538) (contained) saved region 5444:6009 - closest read 101501 ( +128) 5316:9550 ( +3541) (contained) saved region 5444:6009 - closest 5' read 101499 ( +210) 5234:9556 ( +3547) saved region 5444:6009 - closest 3' read 262578 ( +5389) 55:6009 ( +0) search for confused edges: discard region 5444:6009 - no confusion in best edges Annotating repeats in reads for tig 16785/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2157:4073 - contained in read 500661 0- 7747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16794/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11781:10091 - contained in read 266976 0- 12487 discard region 11977:10422 - contained in read 266976 0- 12487 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16802/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4776:5800 - contained in read 171768 0- 8507 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16803/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16806/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2520:1610 - contained in read 628319 0- 7139 discard region 4179:3599 - contained in read 628319 0- 7139 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16809/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16818/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16836/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16844/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5758:6592 - contained in read 378859 0- 7153 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16850/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16853/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16854/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16857/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16867/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16868/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 5592:13621 - contained in read 669962 1697- 13621 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16872/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16875/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 3322:4872 - contained in read 478718 0- 5566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16888/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16911/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16913/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16914/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16930/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16952/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8297 - closest 5' read 284579 ( +0) 0:6141 ( -2156) saved region 0:8297 - closest 3' read 273047 ( -2130) 2130:8297 ( +0) search for confused edges: tig 16952 read 67210 pos 1483-8202 NOT confused by 3' edge to read 125879 - best edge read 273047 len 6054 erate 0.0242 score 5907.49 - alt edge len 974 erate 0.0730 score 902.90 - absdiff 5004.60 percdiff 146.9694 tig 16952 read 67210 pos 1483-8202 NOT confused by 3' edge to read 192614 - best edge read 273047 len 6054 erate 0.0242 score 5907.49 - alt edge len 2102 erate 0.0673 score 1960.54 - absdiff 3946.96 percdiff 100.3290 tig 16952 read 67210 pos 1483-8202 NOT confused by 3' edge to read 372042 - best edge read 273047 len 6054 erate 0.0242 score 5907.49 - alt edge len 1048 erate 0.0640 score 980.93 - absdiff 4926.57 percdiff 143.0390 tig 16952 read 67210 pos 1483-8202 NOT confused by 3' edge to read 492035 - best edge read 273047 len 6054 erate 0.0242 score 5907.49 - alt edge len 2950 erate 0.0588 score 2776.54 - absdiff 3130.95 percdiff 72.1083 tig 16952 read 67210 pos 1483-8202 NOT confused by 3' edge to read 553849 - best edge read 273047 len 6054 erate 0.0242 score 5907.49 - alt edge len 674 erate 0.0564 score 635.99 - absdiff 5271.51 percdiff 161.1224 tig 16952 read 67210 pos 1483-8202 NOT confused by 3' edge to read 553851 - best edge read 273047 len 6054 erate 0.0242 score 5907.49 - alt edge len 671 erate 0.0551 score 634.03 - absdiff 5273.47 percdiff 161.2306 discard region 0:8297 - no confusion in best edges Annotating repeats in reads for tig 16953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16959/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16962/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16979/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:4036 - contained in read 618170 0- 5755 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16989/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17002/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4267:5909 - contained in read 670608 0- 8940 discard region 11755:13828 - contained in read 289943 8174- 14841 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17004/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17011/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17014/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17017/113047. Annotated with 108 overlaps. Scan reads to discard spanned repeats. discard region 0:2432 - contained in read 366397 0- 10363 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17028/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17057/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17059/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17064/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 4285:5778 - contained in read 295752 0- 7167 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17066/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17075/113047. Annotated with 292 overlaps. Scan reads to discard spanned repeats. discard region 13308:14849 - contained in read 588835 10172- 16153 thickest edges to the repeat regions: saved region 10172:11698 - closest read 588835 ( +0) 10172:16153 ( +4455) (contained) saved region 10172:11698 - closest read 588840 ( +0) 10172:16147 ( +4449) (contained) saved region 10172:11698 - closest 5' read 588835 ( +0) 10172:16153 ( +4455) saved region 10172:11698 - closest 3' read 588835 ( +0) 10172:16153 ( +4455) search for confused edges: tig 17075 read 48676 pos 5084-10938 IS confused by 3' edge to read 622279 - best edge read 588835 len 759 erate 0.0711 score 705.04 - alt edge len 673 erate 0.0586 score 633.56 - absdiff 71.47 percdiff 10.6788 saved region 10172:11698 - 1 best edges are potentially confused break tig 17075 into up to 3 pieces: 0 9672 unique (length 9672) 9672 12198 repeat (length 2526) 12198 16153 unique (length 3955) Creating Unitig 114043 Creating Unitig 114044 For tig 17075 unique region 0 9672 - 0/ 10 reads repeat/unique - unitig 114043 created. For tig 17075 repeat region 9672 12198 - 0/ 0 repeat/unique reads - no new unitig created. For tig 17075 unique region 12198 16153 - 0/ 7 reads repeat/unique - unitig 114044 created. Annotating repeats in reads for tig 17076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17078/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:1290 - contained in read 160859 0- 3827 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17080/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17084/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17092/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17130/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17132/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17137/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4392:4897 - contained in read 446173 0- 5889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17143/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17144/113047. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 9603:11083 - contained in read 14480 5837- 12371 thickest edges to the repeat regions: saved region 5213:6521 - closest 5' read 175829 ( +4123) 1090:6460 ( -61) saved region 5213:6521 - closest 3' read 14480 ( -624) 5837:12371 ( +5850) search for confused edges: tig 17144 read 175829 pos 1090-6460 IS confused by 3' edge to read 24237 - best edge read 14480 len 621 erate 0.0518 score 588.83 - alt edge len 533 erate 0.0662 score 497.72 - absdiff 91.12 percdiff 16.7718 saved region 5213:6521 - 1 best edges are potentially confused break tig 17144 into up to 3 pieces: 0 4713 unique (length 4713) 4713 7021 repeat (length 2308) 7021 12371 unique (length 5350) Creating Unitig 114045 Creating Unitig 114046 For tig 17144 unique region 0 4713 - 0/ 8 reads repeat/unique - unitig 114045 created. For tig 17144 repeat region 4713 7021 - 0/ 0 repeat/unique reads - no new unitig created. For tig 17144 unique region 7021 12371 - 0/ 11 reads repeat/unique - unitig 114046 created. Annotating repeats in reads for tig 17150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17162/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 6284:5750 - contained in read 115492 0- 11999 discard region 7462:7990 - contained in read 115492 0- 11999 discard region 8012:9567 - contained in read 115492 0- 11999 discard region 10321:9626 - contained in read 115492 0- 11999 discard region 11263:9964 - contained in read 115492 0- 11999 discard region 11499:10858 - contained in read 115492 0- 11999 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17195/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17206/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17217/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17228/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5949:6497 - contained in read 607077 0- 8874 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17233/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6929:1189 - contained in read 317733 0- 6918 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17241/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1161:350 - contained in read 513575 0- 3583 discard region 1659:1150 - contained in read 513575 0- 3583 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17266/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17273/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17280/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17282/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6099:4794 - contained in read 527166 0- 5988 discard region 6099:5404 - contained in read 527166 0- 5988 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17287/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17291/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17296/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17297/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17303/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17304/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17314/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17322/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7239:7800 - contained in read 327372 1947- 10098 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17334/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1234:2937 - contained in read 328423 0- 6829 discard region 5990:6555 - contained in read 492231 4231- 12931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17348/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17364/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 1120:7293 - contained in read 597178 0- 14413 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17365/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17372/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17382/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17393/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 6479:7985 - contained in read 575103 2065- 7985 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17396/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17408/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17412/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9662:9018 - contained in read 544340 2773- 11044 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17472/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17481/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3400:8491 - closest read 607572 ( +0) 3400:10967 ( +2476) (contained) saved region 3400:8491 - closest 5' read 607572 ( +0) 3400:10967 ( +2476) saved region 3400:8491 - closest 3' read 607572 ( +0) 3400:10967 ( +2476) search for confused edges: discard region 3400:8491 - no confusion in best edges Annotating repeats in reads for tig 17483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17497/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7713:6905 - contained in read 626965 2543- 9550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17522/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9361:9918 - contained in read 205259 4038- 11879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17523/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17532/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3554:6612 - contained in read 602054 15- 6612 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17533/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17534/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5105:6473 - contained in read 206217 2828- 9553 thickest edges to the repeat regions: saved region 11344:12710 - closest read 206218 ( +8436) 2908:12711 ( +1) (contained) saved region 11344:12710 - closest read 351256 ( +4204) 7140:12740 ( +30) (contained) saved region 11344:12710 - closest read 278086 ( +460) 10884:12714 ( +4) (contained) saved region 11344:12710 - closest read 350106 ( +2) 11342:12877 ( +167) (contained) saved region 11344:12710 - closest 5' read 350106 ( +2) 11342:12877 ( +167) saved region 11344:12710 - closest 3' read 206218 ( +8436) 2908:12711 ( +1) search for confused edges: discard region 11344:12710 - no confusion in best edges Annotating repeats in reads for tig 17546/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17551/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 4521:6721 - contained in read 483519 2547- 10164 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17552/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17553/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17555/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17558/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17560/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6234:7950 - contained in read 544211 0- 9816 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17564/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8041:8639 - contained in read 352789 5139- 8639 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17574/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17592/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 1703:3461 - contained in read 699145 0- 8151 discard region 12465:14039 - contained in read 576410 7716- 19321 thickest edges to the repeat regions: saved region 7673:8226 - closest read 235332 ( +7670) 3:8226 ( +0) (contained) saved region 7673:8226 - closest 5' read 235332 ( +7670) 3:8226 ( +0) saved region 7673:8226 - closest 3' read 235332 ( +7670) 3:8226 ( +0) search for confused edges: discard region 7673:8226 - no confusion in best edges Annotating repeats in reads for tig 17597/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17598/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 2913:6995 - contained in read 525716 0- 8236 thickest edges to the repeat regions: saved region 7159:11031 - closest read 564882 ( +0) 7159:12242 ( +1211) (contained) saved region 7159:11031 - closest 5' read 564882 ( +0) 7159:12242 ( +1211) saved region 7159:11031 - closest 3' read 564882 ( +0) 7159:12242 ( +1211) search for confused edges: tig 17598 read 525714 pos 262-9420 IS confused by 3' edge to read 560966 - best edge read 564882 len 2244 erate 0.0653 score 2097.47 - alt edge len 1498 erate 0.0571 score 1412.46 - absdiff 685.00 percdiff 39.0323 tig 17598 read 525714 pos 262-9420 IS confused by 3' edge to read 560967 - best edge read 564882 len 2244 erate 0.0653 score 2097.47 - alt edge len 1539 erate 0.0603 score 1446.20 - absdiff 651.27 percdiff 36.7568 saved region 7159:11031 - 2 best edges are potentially confused break tig 17598 into up to 3 pieces: 0 6659 unique (length 6659) 6659 11531 repeat (length 4872) 11531 12242 unique (length 711) Creating Unitig 114047 Creating Unitig 114048 Creating Unitig 114049 For tig 17598 unique region 0 6659 - 0/ 12 reads repeat/unique - unitig 114047 created. For tig 17598 repeat region 6659 11531 - 6/ 0 reads repeat/unique - unitig 114049 created. For tig 17598 unique region 11531 12242 - 0/ 1 reads repeat/unique - unitig 114048 created. Annotating repeats in reads for tig 17602/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5934:8707 - contained in read 118554 0- 11176 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17614/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17615/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17637/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 0:3607 - contained in read 672552 0- 5711 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17640/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17641/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17654/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3636:4488 - closest 5' read 520576 ( +3082) 554:4462 ( -26) saved region 3636:4488 - closest 3' read 556257 ( -113) 3749:8285 ( +3797) search for confused edges: tig 17654 read 556253 pos 3761-10073 IS confused by 5' edge to read 92292 - best edge read 520576 len 713 erate 0.0554 score 673.50 - alt edge len 527 erate 0.0668 score 491.80 - absdiff 181.70 percdiff 31.1858 tig 17654 read 556253 pos 3761-10073 IS confused by 5' edge to read 92293 - best edge read 520576 len 713 erate 0.0554 score 673.50 - alt edge len 539 erate 0.0523 score 510.81 - absdiff 162.69 percdiff 27.4741 tig 17654 read 556253 pos 3761-10073 IS confused by 5' edge to read 155101 - best edge read 520576 len 713 erate 0.0554 score 673.50 - alt edge len 506 erate 0.0537 score 478.83 - absdiff 194.67 percdiff 33.7876 saved region 3636:4488 - 3 best edges are potentially confused break tig 17654 into up to 3 pieces: 0 3136 unique (length 3136) 3136 4988 repeat (length 1852) 4988 10073 unique (length 5085) Creating Unitig 114050 Creating Unitig 114051 For tig 17654 unique region 0 3136 - 0/ 7 reads repeat/unique - unitig 114050 created. For tig 17654 repeat region 3136 4988 - 0/ 0 repeat/unique reads - no new unitig created. For tig 17654 unique region 4988 10073 - 0/ 5 reads repeat/unique - unitig 114051 created. Annotating repeats in reads for tig 17656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17660/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6514:7232 - contained in read 641005 613- 13187 discard region 10626:13187 - contained in read 641005 613- 13187 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17664/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6244:7410 - closest read 642431 ( +3295) 2949:7411 ( +1) (contained) saved region 6244:7410 - closest read 121700 ( +391) 5853:7410 ( +0) (contained) saved region 6244:7410 - closest read 367116 ( +57) 6187:13051 ( +5641) (contained) saved region 6244:7410 - closest read 23820 ( +0) 6244:11069 ( +3659) (contained) saved region 6244:7410 - closest 5' read 367116 ( +57) 6187:13051 ( +5641) saved region 6244:7410 - closest 3' read 642431 ( +3295) 2949:7411 ( +1) search for confused edges: discard region 6244:7410 - no confusion in best edges Annotating repeats in reads for tig 17669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17673/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3283:4083 - contained in read 210984 701- 4692 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17675/113047. Annotated with 468 overlaps. Scan reads to discard spanned repeats. discard region 8194:14512 - contained in read 281472 846- 14512 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17684/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:9498 - contained in read 67316 0- 11181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17695/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17697/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17742/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:2121 - contained in read 370119 0- 6859 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17744/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 171:1199 - contained in read 255532 0- 5518 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17751/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17771/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17774/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 9:3312 - contained in read 493653 0- 5861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17788/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17816/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 11010:13942 - contained in read 69343 3472- 16531 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17825/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 12619:14218 - contained in read 483710 0- 17336 discard region 14564:17336 - contained in read 123086 11170- 18031 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17844/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17859/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17863/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 10304:10852 - contained in read 691480 4584- 12193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17871/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17873/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17874/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17876/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4574:9893 - contained in read 393132 0- 10466 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17880/113047. Annotated with 109 overlaps. Scan reads to discard spanned repeats. discard region 0:3539 - contained in read 105262 0- 6252 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17917/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17918/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17923/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17927/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17929/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:2491 - contained in read 398902 0- 5580 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17938/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3428:11300 - closest 5' read 614430 ( +3428) 0:8903 ( -2397) saved region 3428:11300 - closest 3' read 319018 ( -3214) 6642:12428 ( +1128) search for confused edges: tig 17938 read 319018 pos 6642-12428 IS confused by 5' edge to read 355040 - best edge read 614430 len 2234 erate 0.0450 score 2133.47 - alt edge len 652 erate 0.0461 score 621.94 - absdiff 1511.53 percdiff 109.7133 saved region 3428:11300 - 1 best edges are potentially confused break tig 17938 into up to 3 pieces: 0 2928 unique (length 2928) 2928 11800 repeat (length 8872) 11800 14110 unique (length 2310) Creating Unitig 114052 Creating Unitig 114053 Creating Unitig 114054 For tig 17938 unique region 0 2928 - 0/ 10 reads repeat/unique - unitig 114052 created. For tig 17938 repeat region 2928 11800 - 5/ 0 reads repeat/unique - unitig 114053 created. For tig 17938 unique region 11800 14110 - 0/ 4 reads repeat/unique - unitig 114054 created. Annotating repeats in reads for tig 17942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17958/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17960/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17967/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17968/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7993:10011 - closest 5' read 186878 ( +3896) 4097:9996 ( -15) saved region 7993:10011 - closest 3' read 588692 ( -114) 8107:10874 ( +863) search for confused edges: tig 17968 read 588692 pos 8107-10874 IS confused by 5' edge to read 247864 - best edge read 186878 len 1886 erate 0.0469 score 1797.55 - alt edge len 1872 erate 0.0595 score 1760.62 - absdiff 36.93 percdiff 2.0758 tig 17968 read 588692 pos 8107-10874 IS confused by 5' edge to read 407592 - best edge read 186878 len 1886 erate 0.0469 score 1797.55 - alt edge len 1577 erate 0.0636 score 1476.70 - absdiff 320.84 percdiff 19.5980 tig 17968 read 588692 pos 8107-10874 IS confused by 5' edge to read 407594 - best edge read 186878 len 1886 erate 0.0469 score 1797.55 - alt edge len 1530 erate 0.0690 score 1424.43 - absdiff 373.12 percdiff 23.1607 tig 17968 read 588692 pos 8107-10874 IS confused by 5' edge to read 407595 - best edge read 186878 len 1886 erate 0.0469 score 1797.55 - alt edge len 1578 erate 0.0655 score 1474.64 - absdiff 322.91 percdiff 19.7364 tig 17968 read 588692 pos 8107-10874 IS confused by 5' edge to read 453066 - best edge read 186878 len 1886 erate 0.0469 score 1797.55 - alt edge len 1875 erate 0.0561 score 1769.81 - absdiff 27.73 percdiff 1.5549 tig 17968 read 588692 pos 8107-10874 IS confused by 5' edge to read 571084 - best edge read 186878 len 1886 erate 0.0469 score 1797.55 - alt edge len 665 erate 0.0665 score 620.78 - absdiff 1176.77 percdiff 97.3210 saved region 7993:10011 - 6 best edges are potentially confused break tig 17968 into up to 3 pieces: 0 7493 unique (length 7493) 7493 10511 repeat (length 3018) 10511 10874 unique (length 363) Creating Unitig 114055 Creating Unitig 114056 Creating Unitig 114057 For tig 17968 unique region 0 7493 - 0/ 6 reads repeat/unique - unitig 114055 created. For tig 17968 repeat region 7493 10511 - 5/ 0 reads repeat/unique - unitig 114056 created. For tig 17968 unique region 10511 10874 - 0/ 1 reads repeat/unique - unitig 114057 created. Annotating repeats in reads for tig 17972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17976/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17978/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3602:5019 - contained in read 404274 0- 6778 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18007/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18010/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 3185:5546 - contained in read 65204 2658- 9025 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18029/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18033/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18039/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18041/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4793:5443 - contained in read 601098 1617- 5951 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18044/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5813:6353 - closest read 384296 ( +5804) 9:6353 ( +0) (contained) saved region 5813:6353 - closest read 384298 ( +5798) 15:6359 ( +6) (contained) saved region 5813:6353 - closest 5' read 384298 ( +5798) 15:6359 ( +6) saved region 5813:6353 - closest 3' read 384296 ( +5804) 9:6353 ( +0) search for confused edges: discard region 5813:6353 - no confusion in best edges Annotating repeats in reads for tig 18046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18051/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:798 - contained in read 636834 0- 9834 discard region 1453:2493 - contained in read 636834 0- 9834 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18071/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3007:2418 - contained in read 651192 0- 3925 thickest edges to the repeat regions: saved region 6270:7370 - closest read 667713 ( +3660) 2610:7539 ( +169) (contained) saved region 6270:7370 - closest read 236989 ( +2748) 3522:7550 ( +180) (contained) saved region 6270:7370 - closest read 600945 ( +0) 6270:7370 ( +0) (contained) saved region 6270:7370 - closest 5' read 236989 ( +2748) 3522:7550 ( +180) saved region 6270:7370 - closest 3' read 667713 ( +3660) 2610:7539 ( +169) search for confused edges: discard region 6270:7370 - no confusion in best edges Annotating repeats in reads for tig 18073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18094/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18113/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6803:8706 - closest read 225050 ( +6803) 0:8706 ( +0) (contained) saved region 6803:8706 - closest 5' read 225050 ( +6803) 0:8706 ( +0) saved region 6803:8706 - closest 3' read 225050 ( +6803) 0:8706 ( +0) search for confused edges: discard region 6803:8706 - no confusion in best edges Annotating repeats in reads for tig 18114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18156/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6485:8161 - contained in read 232136 1911- 10428 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18161/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4514:9763 - closest read 652493 ( +0) 4514:9804 ( +41) (contained) saved region 4514:9763 - closest 5' read 652493 ( +0) 4514:9804 ( +41) saved region 4514:9763 - closest 3' read 652493 ( +0) 4514:9804 ( +41) search for confused edges: discard region 4514:9763 - no confusion in best edges Annotating repeats in reads for tig 18168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18201/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 4014:6017 - contained in read 586190 0- 8333 thickest edges to the repeat regions: saved region 9286:13835 - closest 5' read 227157 ( +7709) 1577:13714 ( -121) saved region 9286:13835 - closest 3' read 620168 ( -31) 9317:15053 ( +1218) search for confused edges: discard region 9286:13835 - no confusion in best edges Annotating repeats in reads for tig 18205/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18210/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4464:9134 - contained in read 341274 156- 9165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18236/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18245/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5010:7295 - contained in read 639107 2266- 9996 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18264/113047. Annotated with 63 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5177:10125 - closest 5' read 452210 ( +3291) 1886:9962 ( -163) saved region 5177:10125 - closest 3' read 559367 ( -55) 5232:15668 ( +5543) search for confused edges: tig 18264 read 452212 pos 1876-9960 IS confused by 3' edge to read 710699 - best edge read 559367 len 4667 erate 0.0276 score 4538.19 - alt edge len 2748 erate 0.0113 score 2716.95 - absdiff 1821.24 percdiff 50.2056 saved region 5177:10125 - 1 best edges are potentially confused break tig 18264 into up to 3 pieces: 0 4677 unique (length 4677) 4677 10625 repeat (length 5948) 10625 15668 unique (length 5043) Creating Unitig 114058 Creating Unitig 114059 Creating Unitig 114060 For tig 18264 unique region 0 4677 - 0/ 10 reads repeat/unique - unitig 114058 created. For tig 18264 repeat region 4677 10625 - 16/ 0 reads repeat/unique - unitig 114059 created. For tig 18264 unique region 10625 15668 - 0/ 1 reads repeat/unique - unitig 114060 created. Annotating repeats in reads for tig 18267/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18284/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18285/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18348/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1725:2956 - contained in read 188150 0- 11200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18381/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4827:6432 - closest read 506140 ( +4827) 0:6534 ( +102) (contained) saved region 4827:6432 - closest read 506141 ( +4827) 0:6432 ( +0) (contained) saved region 4827:6432 - closest 5' read 506140 ( +4827) 0:6534 ( +102) saved region 4827:6432 - closest 3' read 506140 ( +4827) 0:6534 ( +102) search for confused edges: discard region 4827:6432 - no confusion in best edges Annotating repeats in reads for tig 18383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18387/113047. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 3172:8224 - contained in read 195866 126- 10128 discard region 9150:8377 - contained in read 195866 126- 10128 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18395/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4133:6938 - contained in read 448008 13- 6938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18400/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4485:10029 - closest read 672553 ( +149) 4336:10029 ( +0) (contained) saved region 4485:10029 - closest 5' read 672553 ( +149) 4336:10029 ( +0) saved region 4485:10029 - closest 3' read 672553 ( +149) 4336:10029 ( +0) search for confused edges: discard region 4485:10029 - no confusion in best edges Annotating repeats in reads for tig 18417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18426/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18439/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18452/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18454/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 11993:12636 - contained in read 359131 1601- 13992 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18461/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18463/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 100:11582 - closest 5' read 454222 ( +100) 0:11054 ( -528) saved region 100:11582 - closest 3' read 454220 ( -301) 401:11682 ( +100) search for confused edges: discard region 100:11582 - no confusion in best edges Annotating repeats in reads for tig 18468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18475/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18481/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2982:3599 - contained in read 701796 0- 6502 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18483/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 7505:8980 - contained in read 408091 2529- 10110 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18488/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18494/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18510/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4838:9042 - closest 5' read 272766 ( +4476) 362:7849 ( -1193) saved region 4838:9042 - closest 3' read 144829 ( -43) 4881:9533 ( +491) search for confused edges: discard region 4838:9042 - no confusion in best edges Annotating repeats in reads for tig 18517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18533/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18540/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18556/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7984:8621 - contained in read 609668 3333- 9359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18569/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18570/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18587/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13233:14277 - contained in read 293477 6982- 14277 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18592/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18600/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 3772:4404 - contained in read 467310 14- 5746 discard region 5280:9999 - contained in read 714367 4718- 13155 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18602/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18635/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18655/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18669/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7510:6652 - contained in read 706374 126- 7428 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18675/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18701/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18731/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18735/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 2498:4598 - contained in read 482291 0- 7575 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18758/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 4802:6891 - contained in read 484392 621- 6891 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18762/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 8949:12760 - contained in read 484853 6778- 13787 thickest edges to the repeat regions: saved region 6095:6755 - closest read 718874 ( +4751) 1344:6755 ( +0) (contained) saved region 6095:6755 - closest read 718871 ( +4113) 1982:6755 ( +0) (contained) saved region 6095:6755 - closest 5' read 718874 ( +4751) 1344:6755 ( +0) saved region 6095:6755 - closest 3' read 718874 ( +4751) 1344:6755 ( +0) search for confused edges: discard region 6095:6755 - no confusion in best edges Annotating repeats in reads for tig 18768/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18779/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4179:5211 - contained in read 486068 0- 8617 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18821/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6887:7511 - closest read 490230 ( +6887) 0:7524 ( +13) (contained) saved region 6887:7511 - closest read 490231 ( +6887) 0:7511 ( +0) (contained) saved region 6887:7511 - closest read 490232 ( +6885) 2:7527 ( +16) (contained) saved region 6887:7511 - closest read 490234 ( +6885) 2:7527 ( +16) (contained) saved region 6887:7511 - closest read 490233 ( +6883) 4:7527 ( +16) (contained) saved region 6887:7511 - closest 5' read 490232 ( +6885) 2:7527 ( +16) saved region 6887:7511 - closest 3' read 490230 ( +6887) 0:7524 ( +13) search for confused edges: discard region 6887:7511 - no confusion in best edges Annotating repeats in reads for tig 18838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18848/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18856/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18880/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7576:5587 - contained in read 215439 0- 6289 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18884/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18928/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:6224 - contained in read 104454 0- 9907 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18929/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18945/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 3967:5522 - contained in read 503460 0- 6479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18954/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18958/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18960/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18995/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 16529:17289 - contained in read 646919 15105- 21231 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19028/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19029/113047. Annotated with 127 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8127:9657 - closest read 474883 ( +0) 8127:16318 ( +6661) (contained) saved region 8127:9657 - closest 5' read 474883 ( +0) 8127:16318 ( +6661) saved region 8127:9657 - closest 3' read 474883 ( +0) 8127:16318 ( +6661) search for confused edges: discard region 8127:9657 - no confusion in best edges Annotating repeats in reads for tig 19032/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2841:1276 - contained in read 512172 0- 9042 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19047/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19051/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19059/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5735:4013 - contained in read 354518 0- 5882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19075/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:3764 - contained in read 517360 0- 6966 thickest edges to the repeat regions: saved region 5577:7000 - closest 5' read 517360 ( +5577) 0:6966 ( -34) saved region 5577:7000 - closest 3' read 619122 ( -145) 5722:11686 ( +4686) search for confused edges: tig 19075 read 517360 pos 0-6966 IS confused by 3' edge to read 334564 - best edge read 619122 len 1234 erate 0.0640 score 1155.02 - alt edge len 1258 erate 0.0572 score 1186.04 - absdiff 31.02 percdiff 2.6499 tig 19075 read 517360 pos 0-6966 IS confused by 3' edge to read 611820 - best edge read 619122 len 1234 erate 0.0640 score 1155.02 - alt edge len 696 erate 0.0576 score 655.91 - absdiff 499.11 percdiff 55.1222 saved region 5577:7000 - 2 best edges are potentially confused break tig 19075 into up to 3 pieces: 0 5077 unique (length 5077) 5077 7500 repeat (length 2423) 7500 11686 unique (length 4186) Creating Unitig 114061 Creating Unitig 114062 For tig 19075 unique region 0 5077 - 0/ 5 reads repeat/unique - unitig 114061 created. For tig 19075 repeat region 5077 7500 - 0/ 0 repeat/unique reads - no new unitig created. For tig 19075 unique region 7500 11686 - 0/ 6 reads repeat/unique - unitig 114062 created. Annotating repeats in reads for tig 19086/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 9196:10891 - contained in read 566801 4937- 12125 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19088/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10240:11536 - contained in read 599280 5532- 11536 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19089/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3035:8476 - contained in read 357188 41- 10035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19105/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19127/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19142/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19184/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 11108:12210 - contained in read 511460 1216- 13978 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19196/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:678 - contained in read 528659 0- 6861 discard region 1972:3167 - contained in read 528659 0- 6861 discard region 3374:4023 - contained in read 528659 0- 6861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19201/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19210/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19231/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19234/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19235/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 5916:10644 - contained in read 444656 4606- 10670 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19256/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19271/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19294/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19303/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19336/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19360/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2324:4908 - contained in read 53782 389- 5761 thickest edges to the repeat regions: saved region 7390:10216 - closest 5' read 593163 ( +3604) 3786:9516 ( -700) saved region 7390:10216 - closest 3' read 508208 ( -1171) 8561:13384 ( +3168) search for confused edges: discard region 7390:10216 - no confusion in best edges Annotating repeats in reads for tig 19364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19382/113047. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 583:3187 - contained in read 336307 9- 8589 discard region 7518:8247 - contained in read 242311 5086- 12104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19384/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19415/113047. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 0:7579 - contained in read 553073 0- 9476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19434/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19456/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19462/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7367:6448 - contained in read 557409 8- 7363 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19474/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4820:9465 - contained in read 557879 2333- 12619 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19503/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7299:7930 - contained in read 189655 1004- 10700 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19504/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:1352 - contained in read 408937 0- 5952 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19531/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19534/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12148:13249 - closest read 565523 ( +380) 11768:13249 ( +0) (contained) saved region 12148:13249 - closest 5' read 565523 ( +380) 11768:13249 ( +0) saved region 12148:13249 - closest 3' read 565523 ( +380) 11768:13249 ( +0) search for confused edges: discard region 12148:13249 - no confusion in best edges Annotating repeats in reads for tig 19540/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19551/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6986:7547 - contained in read 491801 4672- 7547 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19590/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7598:9122 - contained in read 124043 5113- 10772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19599/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19607/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19610/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19629/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 975:3314 - contained in read 573827 0- 4333 thickest edges to the repeat regions: saved region 3524:7880 - closest 5' read 564011 ( +3208) 316:6665 ( -1215) saved region 3524:7880 - closest 3' read 629906 ( -34) 3558:8008 ( +128) search for confused edges: discard region 3524:7880 - no confusion in best edges Annotating repeats in reads for tig 19639/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19642/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19662/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19666/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9451:14889 - closest read 334934 ( +479) 8972:14948 ( +59) (contained) saved region 9451:14889 - closest read 334933 ( +410) 9041:14952 ( +63) (contained) saved region 9451:14889 - closest read 334936 ( +0) 9451:14889 ( +0) (contained) saved region 9451:14889 - closest 5' read 334933 ( +410) 9041:14952 ( +63) saved region 9451:14889 - closest 3' read 334934 ( +479) 8972:14948 ( +59) search for confused edges: discard region 9451:14889 - no confusion in best edges Annotating repeats in reads for tig 19675/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19677/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7357:14008 - closest 5' read 447476 ( +3817) 3540:10223 ( -3785) saved region 7357:14008 - closest 3' read 648465 ( -367) 7724:18289 ( +4281) search for confused edges: tig 19677 read 447476 pos 3540-10223 IS confused by 5' edge to read 266988 - best edge read 648465 len 2463 erate 0.0224 score 2407.83 - alt edge len 1300 erate 0.0193 score 1274.91 - absdiff 1132.92 percdiff 61.5259 saved region 7357:14008 - 1 best edges are potentially confused break tig 19677 into up to 3 pieces: 0 6857 unique (length 6857) 6857 14508 repeat (length 7651) 14508 18289 unique (length 3781) Creating Unitig 114063 Creating Unitig 114064 Creating Unitig 114065 For tig 19677 unique region 0 6857 - 0/ 8 reads repeat/unique - unitig 114063 created. For tig 19677 repeat region 6857 14508 - 10/ 0 reads repeat/unique - unitig 114064 created. For tig 19677 unique region 14508 18289 - 0/ 2 reads repeat/unique - unitig 114065 created. Annotating repeats in reads for tig 19680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19715/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19718/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 0:5423 - contained in read 582455 0- 8287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19762/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 0:1592 - contained in read 275065 0- 5995 discard region 4769:6257 - contained in read 586453 28- 8156 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19764/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19765/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19782/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19795/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19801/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19807/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 1890:897 - contained in read 592016 0- 6324 discard region 2867:6330 - contained in read 220805 353- 12052 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19862/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 8605:9836 - contained in read 598701 0- 9873 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19863/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19870/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 0:3893 - contained in read 599314 0- 6359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19873/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 0:6660 - contained in read 6894 0- 8209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19874/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 3579:5402 - contained in read 599742 0- 6953 discard region 6424:7475 - contained in read 584118 945- 9887 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19904/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19915/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19954/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19960/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19962/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4698:5255 - contained in read 19340 213- 6657 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19972/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 4240:2967 - contained in read 468940 0- 5630 discard region 4717:3391 - contained in read 468940 0- 5630 discard region 12077:14750 - contained in read 683173 8412- 15689 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19979/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20021/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5039:11208 - closest 5' read 613967 ( +4660) 379:9935 ( -1273) saved region 5039:11208 - closest 3' read 691107 ( -88) 5127:11254 ( +46) search for confused edges: discard region 5039:11208 - no confusion in best edges Annotating repeats in reads for tig 20027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20033/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20091/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20092/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20112/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4215:5446 - contained in read 126550 792- 5446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20125/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20127/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20202/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20204/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5243:6344 - closest read 31049 ( +4072) 1171:6344 ( +0) (contained) saved region 5243:6344 - closest read 632492 ( +213) 5030:6414 ( +70) (contained) saved region 5243:6344 - closest 5' read 632492 ( +213) 5030:6414 ( +70) saved region 5243:6344 - closest 3' read 31049 ( +4072) 1171:6344 ( +0) search for confused edges: discard region 5243:6344 - no confusion in best edges Annotating repeats in reads for tig 20216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20268/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15529:14703 - contained in read 637639 10746- 19757 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20331/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20351/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20388/113047. Annotated with 93 overlaps. Scan reads to discard spanned repeats. discard region 759:11310 - contained in read 628554 0- 16065 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20391/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20395/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20418/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20426/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20428/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1995:4240 - contained in read 539740 1039- 9488 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20448/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20462/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20599/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20602/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 619:1362 - contained in read 669497 0- 1999 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20612/113047. Annotated with 91 overlaps. Scan reads to discard spanned repeats. discard region 4074:8988 - contained in read 637126 2239- 8988 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20628/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 4961:5956 - contained in read 652396 2058- 9595 discard region 8074:6942 - contained in read 652396 2058- 9595 discard region 10668:14200 - contained in read 211103 6569- 18568 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20715/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20728/113047. Annotated with 60 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3907:6434 - closest 5' read 127657 ( +2802) 1105:6306 ( -128) saved region 3907:6434 - closest 3' read 224401 ( -3) 3910:10917 ( +4483) search for confused edges: tig 20728 read 127657 pos 1105-6306 IS confused by 3' edge to read 410751 - best edge read 224401 len 2374 erate 0.0626 score 2225.39 - alt edge len 1995 erate 0.0555 score 1884.28 - absdiff 341.11 percdiff 16.6004 tig 20728 read 127657 pos 1105-6306 IS confused by 3' edge to read 467722 - best edge read 224401 len 2374 erate 0.0626 score 2225.39 - alt edge len 1026 erate 0.0482 score 976.55 - absdiff 1248.84 percdiff 78.0054 tig 20728 read 127657 pos 1105-6306 IS confused by 3' edge to read 467725 - best edge read 224401 len 2374 erate 0.0626 score 2225.39 - alt edge len 1018 erate 0.0523 score 964.76 - absdiff 1260.63 percdiff 79.0327 tig 20728 read 127657 pos 1105-6306 IS confused by 3' edge to read 593620 - best edge read 224401 len 2374 erate 0.0626 score 2225.39 - alt edge len 2373 erate 0.0639 score 2221.37 - absdiff 4.02 percdiff 0.1809 saved region 3907:6434 - 4 best edges are potentially confused break tig 20728 into up to 3 pieces: 0 3407 unique (length 3407) 3407 6934 repeat (length 3527) 6934 10917 unique (length 3983) Creating Unitig 114066 Creating Unitig 114067 Creating Unitig 114068 For tig 20728 unique region 0 3407 - 0/ 14 reads repeat/unique - unitig 114066 created. For tig 20728 repeat region 3407 6934 - 14/ 0 reads repeat/unique - unitig 114067 created. For tig 20728 unique region 6934 10917 - 0/ 2 reads repeat/unique - unitig 114068 created. Annotating repeats in reads for tig 20731/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5486:3807 - contained in read 682729 0- 7514 discard region 5486:3983 - contained in read 682729 0- 7514 discard region 7746:6731 - contained in read 682729 0- 7514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20814/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 17810:18643 - contained in read 468846 6766- 20521 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20879/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5245:6587 - contained in read 698815 0- 6587 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20882/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 931:5356 - closest 5' read 346747 ( +0) 931:5086 ( -270) saved region 931:5356 - closest 3' read 525016 ( -38) 969:5356 ( +0) search for confused edges: tig 20882 read 616829 pos 1070-9081 NOT confused by 3' edge to read 9020 - best edge read 352040 len 3774 erate 0.0376 score 3632.10 - alt edge len 872 erate 0.0667 score 813.84 - absdiff 2818.26 percdiff 126.7792 tig 20882 read 616829 pos 1070-9081 IS confused by 3' edge to read 79460 - best edge read 352040 len 3774 erate 0.0376 score 3632.10 - alt edge len 2700 erate 0.0473 score 2572.29 - absdiff 1059.81 percdiff 34.1632 tig 20882 read 616829 pos 1070-9081 IS confused by 3' edge to read 79461 - best edge read 352040 len 3774 erate 0.0376 score 3632.10 - alt edge len 2705 erate 0.0389 score 2599.78 - absdiff 1032.32 percdiff 33.1304 tig 20882 read 616829 pos 1070-9081 IS confused by 3' edge to read 79462 - best edge read 352040 len 3774 erate 0.0376 score 3632.10 - alt edge len 2700 erate 0.0427 score 2584.71 - absdiff 1047.39 percdiff 33.6954 tig 20882 read 616829 pos 1070-9081 IS confused by 3' edge to read 464616 - best edge read 352040 len 3774 erate 0.0376 score 3632.10 - alt edge len 3771 erate 0.0412 score 3615.63 - absdiff 16.46 percdiff 0.4543 tig 20882 read 616829 pos 1070-9081 IS confused by 3' edge to read 512064 - best edge read 352040 len 3774 erate 0.0376 score 3632.10 - alt edge len 2627 erate 0.0551 score 2482.25 - absdiff 1149.85 percdiff 37.6114 saved region 931:5356 - 5 best edges are potentially confused break tig 20882 into up to 3 pieces: 0 431 unique (length 431) 431 5856 repeat (length 5425) 5856 9986 unique (length 4130) Creating Unitig 114069 Creating Unitig 114070 Creating Unitig 114071 For tig 20882 unique region 0 431 - 0/ 1 reads repeat/unique - unitig 114069 created. For tig 20882 repeat region 431 5856 - 47/ 0 reads repeat/unique - unitig 114070 created. For tig 20882 unique region 5856 9986 - 0/ 6 reads repeat/unique - unitig 114071 created. Annotating repeats in reads for tig 20890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20962/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21041/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21104/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21114/113047. Annotated with 129 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4938:9182 - closest 5' read 242129 ( +1094) 3844:7389 ( -1793) saved region 4938:9182 - closest 3' read 327627 ( -160) 5098:14874 ( +5692) search for confused edges: tig 21114 read 720522 pos 3651-5687 IS confused by 5' edge to read 118286 - best edge read 327627 len 582 erate 0.0350 score 561.63 - alt edge len 521 erate 0.0450 score 497.56 - absdiff 64.07 percdiff 12.0989 saved region 4938:9182 - 1 best edges are potentially confused break tig 21114 into up to 3 pieces: 0 4438 unique (length 4438) 4438 9682 repeat (length 5244) 9682 14887 unique (length 5205) Creating Unitig 114072 Creating Unitig 114073 Creating Unitig 114074 For tig 21114 unique region 0 4438 - 0/ 6 reads repeat/unique - unitig 114072 created. For tig 21114 repeat region 4438 9682 - 1/ 0 reads repeat/unique - unitig 114074 created. For tig 21114 unique region 9682 14887 - 0/ 7 reads repeat/unique - unitig 114073 created. Annotating repeats in reads for tig 21116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21161/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21162/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21166/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21169/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21178/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4125:5042 - closest read 686155 ( +4125) 0:5065 ( +23) (contained) saved region 4125:5042 - closest read 412167 ( +2546) 1579:5078 ( +36) (contained) saved region 4125:5042 - closest read 5304 ( +9) 4116:6264 ( +1222) (contained) saved region 4125:5042 - closest read 5303 ( +0) 4125:6264 ( +1222) (contained) saved region 4125:5042 - closest read 5302 ( +0) 4125:6257 ( +1215) (contained) saved region 4125:5042 - closest 5' read 5304 ( +9) 4116:6264 ( +1222) saved region 4125:5042 - closest 3' read 686155 ( +4125) 0:5065 ( +23) search for confused edges: discard region 4125:5042 - no confusion in best edges Annotating repeats in reads for tig 21181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21189/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5869:7018 - closest read 18046 ( +0) 5869:13306 ( +6288) (contained) saved region 5869:7018 - closest 5' read 18046 ( +0) 5869:13306 ( +6288) saved region 5869:7018 - closest 3' read 18046 ( +0) 5869:13306 ( +6288) search for confused edges: discard region 5869:7018 - no confusion in best edges Annotating repeats in reads for tig 21191/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21193/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11894:8885 - contained in read 715425 2463- 17092 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21205/113047. Annotated with 216 overlaps. Scan reads to discard spanned repeats. discard region 0:4173 - contained in read 436079 0- 6983 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21207/113047. Annotated with 102 overlaps. Scan reads to discard spanned repeats. discard region 9519:13847 - contained in read 657451 4836- 14355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21210/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21217/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21219/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21226/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5448:7211 - contained in read 102386 0- 8672 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21233/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21237/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6717:5116 - contained in read 10470 0- 5701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21246/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21254/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21257/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. discard region 0:884 - contained in read 391117 0- 8862 discard region 4335:1811 - contained in read 391117 0- 8862 discard region 4488:7220 - contained in read 391117 0- 8862 discard region 7392:10626 - contained in read 11841 5940- 12048 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21259/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21265/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21273/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21274/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6777:7588 - contained in read 422898 3230- 11390 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21284/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21296/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21297/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21309/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21312/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21325/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:3868 - contained in read 17181 0- 6879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21333/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21342/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21351/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21364/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21365/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21368/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21376/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21384/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21386/113047. Annotated with 160 overlaps. Scan reads to discard spanned repeats. discard region 1681:3309 - contained in read 20852 0- 5884 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21393/113047. Annotated with 132 overlaps. Scan reads to discard spanned repeats. discard region 1666:8735 - contained in read 23756 0- 9609 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21396/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21397/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 7536:8420 - contained in read 21208 3733- 9365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21399/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1941:2970 - contained in read 21371 0- 5083 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21421/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21422/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21424/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21426/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13542:14382 - contained in read 349877 11322- 18100 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21432/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21433/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1330:699 - contained in read 23425 0- 5553 discard region 3964:5209 - contained in read 58487 699- 7540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21439/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21440/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21458/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21459/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21466/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21467/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21471/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5962:5198 - contained in read 25942 0- 5945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21477/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21491/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21492/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3155:4307 - contained in read 27575 0- 8341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21501/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2880:2342 - contained in read 28081 0- 6630 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21505/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21511/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21523/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21530/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1003:2602 - contained in read 30413 0- 6605 discard region 4646:6732 - contained in read 30414 1807- 7621 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21540/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21550/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21552/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21560/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3601:107 - contained in read 31837 0- 6865 discard region 4832:174 - contained in read 31837 0- 6865 discard region 4832:188 - contained in read 31837 0- 6865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21561/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5341:6446 - contained in read 379412 338- 7152 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21570/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21571/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21572/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21574/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21578/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21580/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21596/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21597/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21607/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21610/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21614/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21630/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2134:5967 - closest 5' read 125500 ( +0) 2134:5964 ( -3) saved region 2134:5967 - closest 3' read 245155 ( -12) 2146:5967 ( +0) search for confused edges: tig 21630 read 421821 pos 2175-8660 IS confused by 3' edge to read 101361 - best edge read 36982 len 3647 erate 0.0597 score 3429.27 - alt edge len 2841 erate 0.0660 score 2653.49 - absdiff 775.78 percdiff 25.5075 saved region 2134:5967 - 1 best edges are potentially confused break tig 21630 into up to 3 pieces: 0 1634 unique (length 1634) 1634 6467 repeat (length 4833) 6467 8660 unique (length 2193) Creating Unitig 114075 Creating Unitig 114076 Creating Unitig 114077 For tig 21630 unique region 0 1634 - 0/ 5 reads repeat/unique - unitig 114075 created. For tig 21630 repeat region 1634 6467 - 20/ 0 reads repeat/unique - unitig 114076 created. For tig 21630 unique region 6467 8660 - 0/ 2 reads repeat/unique - unitig 114077 created. Annotating repeats in reads for tig 21631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21635/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21646/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21649/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21656/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2949:3824 - contained in read 90934 0- 7571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21660/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21662/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5467:6876 - contained in read 38854 0- 9954 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21663/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5812:6560 - contained in read 142057 196- 9820 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21674/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21675/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21678/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21697/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8386:9346 - contained in read 310800 16- 11718 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21699/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4367:7655 - closest read 268695 ( +2917) 1450:7672 ( +17) (contained) saved region 4367:7655 - closest 5' read 268695 ( +2917) 1450:7672 ( +17) saved region 4367:7655 - closest 3' read 268695 ( +2917) 1450:7672 ( +17) search for confused edges: discard region 4367:7655 - no confusion in best edges Annotating repeats in reads for tig 21706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21716/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21717/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21723/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 791:2266 - contained in read 43489 2- 5974 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21726/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21727/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21729/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21731/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21746/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21747/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21748/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6205:9404 - contained in read 221197 5460- 13393 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21753/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21763/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21764/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 5470:6890 - contained in read 518100 1828- 7496 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21768/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21771/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21776/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21791/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21797/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21799/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21801/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21809/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21810/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 1427:3961 - contained in read 478920 0- 4782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21815/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2157:4960 - contained in read 341485 0- 9660 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21820/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21822/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2500:0 - contained in read 401045 0- 4973 discard region 4050:6939 - contained in read 616910 1249- 8819 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21825/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21833/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21844/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21854/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21856/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21858/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21863/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21867/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21869/113047. Annotated with 102 overlaps. Scan reads to discard spanned repeats. discard region 845:6047 - contained in read 54250 20- 6047 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21873/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21875/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21879/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21880/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21884/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21894/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3320:2180 - contained in read 55531 0- 5808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21899/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21910/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21915/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21929/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2947:6564 - closest read 57750 ( +350) 2597:6564 ( +0) (contained) saved region 2947:6564 - closest 5' read 57750 ( +350) 2597:6564 ( +0) saved region 2947:6564 - closest 3' read 57750 ( +350) 2597:6564 ( +0) search for confused edges: discard region 2947:6564 - no confusion in best edges Annotating repeats in reads for tig 21930/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 3004:9231 - contained in read 393980 426- 11345 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21931/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21932/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5559:8282 - contained in read 82139 1021- 9875 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21933/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2355:5214 - contained in read 58030 0- 7079 discard region 12057:12641 - contained in read 513772 3618- 14515 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21958/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3169:4293 - contained in read 579747 130- 6594 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21959/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21962/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4591:5951 - contained in read 178712 2300- 7787 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21967/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21982/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21993/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21995/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2082:5792 - contained in read 62349 2- 5792 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21998/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22011/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22029/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22039/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22043/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22048/113047. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 2786:4807 - contained in read 65970 0- 14244 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22057/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22059/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22060/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 6474:8474 - contained in read 320723 2251- 8474 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22068/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 393:2362 - contained in read 68088 0- 5146 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22077/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1442 - contained in read 68423 0- 6089 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22084/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22092/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22104/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22106/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:1441 - contained in read 606906 0- 4437 discard region 5246:8823 - contained in read 486641 1930- 10182 thickest edges to the repeat regions: saved region 2024:4482 - closest read 486641 ( +94) 1930:10182 ( +5700) (contained) saved region 2024:4482 - closest read 376686 ( +54) 1970:8159 ( +3677) (contained) saved region 2024:4482 - closest 5' read 486641 ( +94) 1930:10182 ( +5700) saved region 2024:4482 - closest 3' read 486641 ( +94) 1930:10182 ( +5700) search for confused edges: discard region 2024:4482 - no confusion in best edges Annotating repeats in reads for tig 22107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22111/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22122/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22130/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:1299 - contained in read 371334 0- 5285 discard region 1259:2361 - contained in read 371334 0- 5285 discard region 2732:5285 - contained in read 72054 1073- 9504 discard region 6320:8632 - contained in read 72054 1073- 9504 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22142/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22143/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 4271:5147 - contained in read 193582 6- 11183 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22160/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22179/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22210/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22213/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22240/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4930:5902 - contained in read 79398 0- 6718 discard region 7526:9841 - contained in read 67678 1495- 12010 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22246/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22248/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22256/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22273/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22281/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9206:11886 - contained in read 275359 6448- 12502 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22285/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5894:6418 - contained in read 569640 4721- 13518 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22288/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 6057:8557 - contained in read 371128 652- 8557 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22290/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22300/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22304/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22306/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22309/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22312/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:1750 - contained in read 65797 0- 7953 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22329/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22331/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22334/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3389:5395 - contained in read 610815 0- 6466 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22338/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2790:6342 - contained in read 85344 0- 7747 discard region 7289:6640 - contained in read 85344 0- 7747 discard region 7289:6693 - contained in read 85344 0- 7747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22342/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22350/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 4359:8497 - contained in read 86156 3559- 9772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22358/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1102:0 - contained in read 86635 0- 3001 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22360/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 1681:5786 - contained in read 24392 0- 6596 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22368/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22374/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2941:2279 - contained in read 220464 0- 7165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22382/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22384/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22385/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 14927:13332 - contained in read 87902 8033- 20194 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22391/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22396/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22398/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22402/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5204:6424 - contained in read 609356 17- 9569 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22408/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22412/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22414/113047. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 4259:5119 - contained in read 89782 0- 5696 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22422/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:2613 - contained in read 24773 0- 3146 discard region 3156:5768 - contained in read 514177 1059- 8513 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22424/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22437/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22452/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8232:7075 - contained in read 92722 0- 8966 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22458/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22461/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22462/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22477/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22480/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22486/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22495/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22504/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22506/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22531/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22535/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5627:8021 - contained in read 216855 2250- 9381 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22536/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22537/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22549/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 16105:17001 - contained in read 100051 5980- 19451 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22568/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3407:4938 - contained in read 101060 0- 6350 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22570/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 885:1851 - contained in read 435678 0- 4268 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22571/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2885:0 - contained in read 101291 0- 6183 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22580/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22583/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4017:4854 - contained in read 215018 0- 6087 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22599/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22612/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22615/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22635/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22642/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22645/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22647/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6353:7265 - contained in read 617579 0- 10317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22652/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 747:2379 - contained in read 106792 0- 7405 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22662/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22666/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22692/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5456:6032 - contained in read 64225 0- 6649 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22695/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22701/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22712/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2456:3206 - contained in read 288811 0- 7318 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22713/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7118:8182 - closest 5' read 540342 ( +6996) 122:8154 ( -28) saved region 7118:8182 - closest 3' read 679001 ( -6) 7124:11182 ( +3000) search for confused edges: tig 22713 read 540342 pos 122-8154 IS confused by 5' edge to read 87006 - best edge read 679001 len 1031 erate 0.0481 score 981.41 - alt edge len 913 erate 0.0520 score 865.52 - absdiff 115.88 percdiff 12.5489 tig 22713 read 540342 pos 122-8154 IS confused by 5' edge to read 87011 - best edge read 679001 len 1031 erate 0.0481 score 981.41 - alt edge len 914 erate 0.0553 score 863.46 - absdiff 117.95 percdiff 12.7872 tig 22713 read 540342 pos 122-8154 IS confused by 5' edge to read 106888 - best edge read 679001 len 1031 erate 0.0481 score 981.41 - alt edge len 700 erate 0.0588 score 658.84 - absdiff 322.57 percdiff 39.3317 tig 22713 read 540342 pos 122-8154 IS confused by 5' edge to read 656334 - best edge read 679001 len 1031 erate 0.0481 score 981.41 - alt edge len 615 erate 0.0628 score 576.38 - absdiff 405.03 percdiff 52.0008 saved region 7118:8182 - 4 best edges are potentially confused break tig 22713 into up to 3 pieces: 0 6618 unique (length 6618) 6618 8682 repeat (length 2064) 8682 11182 unique (length 2500) Creating Unitig 114078 Creating Unitig 114079 For tig 22713 unique region 0 6618 - 0/ 9 reads repeat/unique - unitig 114078 created. For tig 22713 repeat region 6618 8682 - 0/ 0 repeat/unique reads - no new unitig created. For tig 22713 unique region 8682 11182 - 0/ 1 reads repeat/unique - unitig 114079 created. Annotating repeats in reads for tig 22719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22724/113047. Annotated with 138 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7134 - closest 5' read 111658 ( +0) 0:6137 ( -997) saved region 0:7134 - closest 3' read 645305 ( -875) 875:7897 ( +763) search for confused edges: tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 54635 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 642 erate 0.0343 score 619.98 - absdiff 3501.23 percdiff 147.6942 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 54637 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 681 erate 0.0265 score 662.95 - absdiff 3458.25 percdiff 144.5710 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 54638 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 686 erate 0.0350 score 661.99 - absdiff 3459.22 percdiff 144.6404 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 343328 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 576 erate 0.0485 score 548.06 - absdiff 3573.14 percdiff 153.0493 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 362081 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 2066 erate 0.0574 score 1947.41 - absdiff 2173.80 percdiff 71.6406 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 447227 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 576 erate 0.0557 score 543.92 - absdiff 3577.29 percdiff 153.3632 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 677214 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 788 erate 0.0610 score 739.93 - absdiff 3381.28 percdiff 139.1145 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 679773 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 856 erate 0.0633 score 801.82 - absdiff 3319.39 percdiff 134.8518 tig 22724 read 645307 pos 981-8024 NOT confused by 5' edge to read 692155 - best edge read 111659 len 4403 erate 0.0640 score 4121.21 - alt edge len 1292 erate 0.0615 score 1212.54 - absdiff 2908.67 percdiff 109.0665 discard region 0:7134 - no confusion in best edges Annotating repeats in reads for tig 22729/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22731/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22754/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22765/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22767/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7884:9917 - contained in read 56004 2971- 10823 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22771/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22783/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22791/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22797/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22799/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22801/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22809/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22818/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22820/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22825/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22826/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22833/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22841/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3155:4752 - contained in read 118657 0- 6759 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22852/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2951:9623 - contained in read 624362 264- 9623 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22854/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22857/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:5842 - contained in read 678532 0- 11591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22867/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 0:3945 - contained in read 120080 0- 7268 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22870/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6576:7863 - contained in read 120197 4749- 14713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22872/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22873/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22877/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1562:4562 - contained in read 120494 0- 8293 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22880/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22886/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4517:5857 - closest read 594947 ( +2493) 2024:5888 ( +31) (contained) saved region 4517:5857 - closest read 382829 ( +1959) 2558:5885 ( +28) (contained) saved region 4517:5857 - closest read 172146 ( +0) 4517:5888 ( +31) (contained) saved region 4517:5857 - closest 5' read 594947 ( +2493) 2024:5888 ( +31) saved region 4517:5857 - closest 3' read 594947 ( +2493) 2024:5888 ( +31) search for confused edges: discard region 4517:5857 - no confusion in best edges Annotating repeats in reads for tig 22887/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22888/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22891/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4322:5487 - contained in read 230514 0- 6877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22904/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22905/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22913/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22914/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22915/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22916/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22918/113047. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 2850:5105 - contained in read 666800 766- 9082 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22923/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22936/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22946/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22950/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22953/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22956/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22958/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1578:3683 - contained in read 679374 0- 6606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22971/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22996/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 584:5935 - closest 5' read 129558 ( +300) 284:5842 ( -93) saved region 584:5935 - closest 3' read 685533 ( -1929) 2513:11004 ( +5069) search for confused edges: discard region 584:5935 - no confusion in best edges Annotating repeats in reads for tig 22998/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23004/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23015/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5547:3728 - contained in read 639636 0- 6234 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23016/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23019/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:555 - contained in read 376051 0- 3665 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23020/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23033/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5327:6471 - contained in read 683385 788- 7196 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23041/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23074/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23077/113047. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 1671:5306 - contained in read 74941 0- 6134 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23080/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23086/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23113/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23122/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23128/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23149/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2269:3542 - contained in read 140557 0- 5198 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23169/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23175/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2211:3548 - contained in read 652421 592- 6054 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23194/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23201/113047. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1772:5593 - closest 5' read 143902 ( +1106) 666:5575 ( -18) saved region 1772:5593 - closest 3' read 143901 ( -34) 1806:5838 ( +245) search for confused edges: discard region 1772:5593 - no confusion in best edges Annotating repeats in reads for tig 23203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23204/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23205/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23209/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23213/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23238/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23252/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4610:8089 - contained in read 180881 53- 9211 discard region 8220:9946 - contained in read 147889 5475- 13945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23269/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23284/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23285/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23292/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23294/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23295/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23312/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2462:5548 - contained in read 152836 1001- 6441 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23321/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23336/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23341/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 910:2123 - contained in read 154626 0- 6355 discard region 8664:9449 - contained in read 72741 3604- 9558 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23352/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23356/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23383/113047. Annotated with 160 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9514 - closest 5' read 158199 ( +0) 0:9396 ( -118) saved region 0:9514 - closest 3' read 29574 ( -2498) 2498:10114 ( +600) search for confused edges: tig 23383 read 158199 pos 0-9396 IS confused by 3' edge to read 11939 - best edge read 558743 len 4456 erate 0.0471 score 4246.12 - alt edge len 3283 erate 0.0585 score 3090.94 - absdiff 1155.18 percdiff 31.4888 saved region 0:9514 - 1 best edges are potentially confused break tig 23383 into up to 2 pieces: 0 10014 repeat (length 10014) 10014 10603 unique (length 589) Creating Unitig 114080 Creating Unitig 114081 For tig 23383 repeat region 0 10014 - 34/ 0 reads repeat/unique - unitig 114080 created. For tig 23383 unique region 10014 10603 - 0/ 5 reads repeat/unique - unitig 114081 created. Annotating repeats in reads for tig 23390/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6559:8529 - contained in read 45816 3911- 10739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23395/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5736:4599 - contained in read 159096 0- 8335 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23407/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23412/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23413/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1640:0 - contained in read 160238 0- 6606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23429/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23432/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23452/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23461/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23462/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23468/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23489/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23502/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8494:7467 - contained in read 168628 2731- 10301 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23505/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23513/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23525/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23537/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2114:3585 - contained in read 171208 0- 7959 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23555/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23568/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23578/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23580/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23589/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23592/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23594/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23616/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23625/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23630/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23642/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23645/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23651/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3042:3917 - contained in read 349500 644- 3917 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23652/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23655/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23666/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23671/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2907:2243 - contained in read 636679 0- 6202 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23678/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 243:2609 - contained in read 182427 0- 5708 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23682/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23697/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23702/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23709/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23726/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1777:0 - contained in read 98758 0- 5126 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23727/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23738/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 607:3569 - closest read 187361 ( +607) 0:3765 ( +196) (contained) saved region 607:3569 - closest read 187364 ( +280) 327:3826 ( +257) (contained) saved region 607:3569 - closest 5' read 187364 ( +280) 327:3826 ( +257) saved region 607:3569 - closest 3' read 187361 ( +607) 0:3765 ( +196) search for confused edges: discard region 607:3569 - no confusion in best edges Annotating repeats in reads for tig 23739/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6818 - closest 5' read 277370 ( +0) 0:5296 ( -1522) saved region 0:6818 - closest 3' read 187372 ( -1) 1:8993 ( +2175) search for confused edges: discard region 0:6818 - no confusion in best edges Annotating repeats in reads for tig 23740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23741/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23742/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2235:4061 - contained in read 315549 298- 6623 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23758/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23779/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1240:5559 - closest read 189803 ( +27) 1213:6803 ( +1244) (contained) saved region 1240:5559 - closest read 189802 ( +0) 1240:6811 ( +1252) (contained) saved region 1240:5559 - closest 5' read 189802 ( +0) 1240:6811 ( +1252) saved region 1240:5559 - closest 3' read 189803 ( +27) 1213:6803 ( +1244) search for confused edges: discard region 1240:5559 - no confusion in best edges Annotating repeats in reads for tig 23787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23792/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23804/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23805/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23834/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23844/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23859/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23867/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23879/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23884/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23887/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23888/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3261:5223 - contained in read 289886 0- 5816 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23905/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23910/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23916/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23923/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23937/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 447:4678 - contained in read 199724 0- 6239 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23944/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23951/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23977/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23980/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23982/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1663:2397 - contained in read 204217 0- 10209 discard region 2745:4739 - contained in read 204217 0- 10209 discard region 11070:11696 - contained in read 606278 754- 13170 discard region 13971:15334 - contained in read 451601 7225- 15334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23989/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23995/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23996/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23998/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24011/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 384:2593 - contained in read 206162 0- 8805 discard region 8126:9099 - contained in read 438013 2731- 9941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24029/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1243:0 - contained in read 207643 0- 6105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24030/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24041/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24051/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5801:4743 - contained in read 209076 0- 6446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24062/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24102/113047. Annotated with 128 overlaps. Scan reads to discard spanned repeats. discard region 1704:475 - contained in read 585407 0- 11814 discard region 2021:694 - contained in read 585407 0- 11814 discard region 2897:958 - contained in read 585407 0- 11814 discard region 3205:2249 - contained in read 585407 0- 11814 discard region 3426:4582 - contained in read 585407 0- 11814 discard region 5038:6292 - contained in read 585407 0- 11814 discard region 6907:6359 - contained in read 585407 0- 11814 discard region 7205:8828 - contained in read 585407 0- 11814 discard region 9875:8845 - contained in read 585407 0- 11814 discard region 9948:9386 - contained in read 585407 0- 11814 discard region 10552:9486 - contained in read 585407 0- 11814 discard region 10561:9801 - contained in read 585407 0- 11814 discard region 10561:10051 - contained in read 585407 0- 11814 discard region 10965:10329 - contained in read 585407 0- 11814 discard region 11151:10590 - contained in read 585407 0- 11814 discard region 11221:10637 - contained in read 585407 0- 11814 discard region 11240:10662 - contained in read 585407 0- 11814 discard region 11605:10718 - contained in read 585407 0- 11814 discard region 11967:11268 - contained in read 585407 0- 11814 discard region 15339:16635 - contained in read 212367 9975- 17064 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24120/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24128/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24131/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2244:5242 - contained in read 214780 0- 5865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24133/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24134/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24136/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1285 - contained in read 700237 0- 5232 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24148/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24161/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24171/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24182/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24195/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24199/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24208/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24214/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24227/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24230/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24231/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24241/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5917:7538 - contained in read 523057 4741- 7808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24246/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2223:7580 - contained in read 674494 0- 11560 discard region 7620:12226 - contained in read 202604 4102- 13595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24248/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24250/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24278/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7332:5472 - contained in read 422558 0- 6929 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24284/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24300/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24304/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24305/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24306/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24312/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24336/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9735:11745 - contained in read 419698 1566- 12251 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24350/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 1428:2598 - contained in read 231790 0- 7207 discard region 2723:4826 - contained in read 231790 0- 7207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24351/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5207:6076 - contained in read 30271 876- 9431 discard region 6680:7552 - contained in read 30271 876- 9431 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24367/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24370/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4053:3433 - contained in read 233209 0- 5935 discard region 5085:5804 - contained in read 212176 3360- 10336 discard region 9182:9828 - contained in read 212176 3360- 10336 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24385/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24388/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24391/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24392/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2372:7022 - contained in read 234483 0- 8985 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24398/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24401/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24414/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24421/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24424/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24427/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2390:5108 - contained in read 689602 0- 7393 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24429/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1573:5811 - contained in read 424249 0- 9105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24434/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24438/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24469/113047. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 1180:6705 - contained in read 240512 159- 7465 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24472/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24475/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24482/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1292:2444 - contained in read 255377 0- 9136 discard region 4200:5886 - contained in read 255377 0- 9136 discard region 7528:7008 - contained in read 255377 0- 9136 discard region 7849:8624 - contained in read 255377 0- 9136 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24486/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24521/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24524/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3102:4692 - contained in read 244970 0- 6843 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24546/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1460:2685 - contained in read 246747 0- 4979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24568/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24603/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5556:6274 - contained in read 241649 3843- 9765 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24631/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2213:4661 - contained in read 253071 0- 5451 discard region 4757:5455 - contained in read 41222 2213- 8530 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24647/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24674/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24689/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24691/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1415:5052 - contained in read 465688 0- 7197 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24706/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24708/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24729/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24739/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24747/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24750/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24761/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24776/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24781/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7607:9320 - closest read 265127 ( +0) 7607:14765 ( +5445) (contained) saved region 7607:9320 - closest 5' read 265127 ( +0) 7607:14765 ( +5445) saved region 7607:9320 - closest 3' read 265127 ( +0) 7607:14765 ( +5445) search for confused edges: discard region 7607:9320 - no confusion in best edges Annotating repeats in reads for tig 24782/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24783/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24790/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1418:2331 - contained in read 215603 50- 8666 discard region 5301:6388 - contained in read 215603 50- 8666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24805/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24807/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7497:5251 - contained in read 267368 0- 6279 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24809/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24820/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4549:5999 - contained in read 474082 457- 6667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24833/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24836/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24857/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24894/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24898/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24903/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 509:1816 - contained in read 619067 0- 6006 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24905/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24916/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24917/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3554:4596 - contained in read 274517 91- 6582 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24926/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24931/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24936/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24971/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24991/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1647:2862 - contained in read 352194 0- 5983 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24995/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24998/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25007/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25008/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 27:6041 - contained in read 573646 0- 8147 discard region 6116:7223 - contained in read 573646 0- 8147 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25028/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 842:5574 - contained in read 282290 135- 7043 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25034/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:1607 - contained in read 282566 0- 6279 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25041/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25047/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25059/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25066/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1686:2801 - contained in read 284907 0- 4335 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25080/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25091/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25104/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 23:1155 - contained in read 168422 0- 7168 discard region 2821:3870 - contained in read 168422 0- 7168 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25110/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2752:1870 - contained in read 288620 0- 6189 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25120/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25132/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25137/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25148/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5350:8115 - contained in read 291695 24- 8905 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25162/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25169/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25205/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25223/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6044:3851 - contained in read 298533 0- 7060 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25234/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25238/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25240/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25254/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25261/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 949:3460 - contained in read 282605 333- 3756 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25265/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25266/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25277/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3634:7255 - contained in read 302993 1775- 7838 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25280/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3934:5396 - contained in read 14871 0- 7157 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25319/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3083:5850 - closest read 351174 ( +0) 3083:9023 ( +3173) (contained) saved region 3083:5850 - closest 5' read 351174 ( +0) 3083:9023 ( +3173) saved region 3083:5850 - closest 3' read 351174 ( +0) 3083:9023 ( +3173) search for confused edges: discard region 3083:5850 - no confusion in best edges Annotating repeats in reads for tig 25320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25338/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4098:8504 - contained in read 71819 0- 10819 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25339/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25348/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 72:5300 - contained in read 294087 0- 8298 discard region 6456:7504 - contained in read 294087 0- 8298 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25363/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25365/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25368/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 252:6674 - contained in read 542189 0- 7903 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25377/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6351:6939 - contained in read 310655 2512- 6939 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25382/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25388/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25393/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25396/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25404/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3880:3103 - contained in read 462451 0- 6191 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25406/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25409/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3557:5308 - contained in read 44664 0- 9640 discard region 7634:9326 - contained in read 186094 4321- 10117 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25422/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25448/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25459/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25464/113047. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4240 - closest 5' read 376811 ( +0) 0:3641 ( -599) saved region 0:4240 - closest 3' read 289668 ( -10) 10:6420 ( +2180) search for confused edges: discard region 0:4240 - no confusion in best edges Annotating repeats in reads for tig 25465/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25497/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25499/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25507/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3517:4205 - contained in read 320471 0- 6042 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25521/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25531/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25554/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:5261 - contained in read 361626 0- 12970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25558/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25559/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1084:1767 - contained in read 589992 0- 8014 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25575/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 2670:6993 - contained in read 429081 1154- 6993 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25612/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25615/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25634/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 987:2279 - contained in read 329998 0- 4672 discard region 3351:7647 - contained in read 47783 580- 8158 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25636/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25650/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25655/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25668/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25708/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25738/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25742/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25745/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5204:4190 - contained in read 337181 0- 8055 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25757/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25766/113047. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 6453:7306 - contained in read 53567 5890- 20779 discard region 8657:14242 - contained in read 53567 5890- 20779 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25767/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25771/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25809/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25821/113047. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 0:5423 - contained in read 124700 0- 8533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25828/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 2660:3780 - contained in read 595093 0- 5211 discard region 9625:10772 - contained in read 21718 2680- 10772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25846/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25850/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25857/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25868/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3690:4433 - contained in read 174925 0- 8447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25873/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25883/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9618:10717 - contained in read 347172 1587- 10717 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25897/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8185:8958 - contained in read 348142 3065- 12407 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25898/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25916/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25917/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25935/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25940/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1813:7023 - contained in read 351153 29- 7023 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25942/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 2445:4844 - contained in read 94636 0- 10094 discard region 5402:6948 - contained in read 94636 0- 10094 discard region 7626:10461 - contained in read 398989 5239- 11102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25950/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25956/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25960/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25971/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25986/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26019/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26024/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26027/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26033/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 3309:4327 - contained in read 150212 0- 7924 discard region 6845:7929 - contained in read 358389 2677- 8448 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26059/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26069/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26077/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26092/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26113/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26115/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5657:6216 - contained in read 94713 602- 10452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26127/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26139/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26141/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:3527 - contained in read 192953 0- 6063 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26142/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26147/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26159/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26170/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26188/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1007:2549 - contained in read 368525 1- 3148 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26194/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26199/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3835:8318 - closest read 370095 ( +0) 3835:9858 ( +1540) (contained) saved region 3835:8318 - closest 5' read 370095 ( +0) 3835:9858 ( +1540) saved region 3835:8318 - closest 3' read 370095 ( +0) 3835:9858 ( +1540) search for confused edges: tig 26199 read 370094 pos 4930-10489 IS confused by 3' edge to read 302484 - best edge read 74718 len 2628 erate 0.0468 score 2505.01 - alt edge len 1806 erate 0.0648 score 1688.97 - absdiff 816.04 percdiff 38.9147 tig 26199 read 370094 pos 4930-10489 IS confused by 3' edge to read 647908 - best edge read 74718 len 2628 erate 0.0468 score 2505.01 - alt edge len 1522 erate 0.0637 score 1425.05 - absdiff 1079.96 percdiff 54.9590 saved region 3835:8318 - 2 best edges are potentially confused break tig 26199 into up to 3 pieces: 0 3335 unique (length 3335) 3335 8818 repeat (length 5483) 8818 10489 unique (length 1671) Creating Unitig 114082 Creating Unitig 114083 Creating Unitig 114084 For tig 26199 unique region 0 3335 - 0/ 12 reads repeat/unique - unitig 114082 created. For tig 26199 repeat region 3335 8818 - 3/ 0 reads repeat/unique - unitig 114084 created. For tig 26199 unique region 8818 10489 - 0/ 2 reads repeat/unique - unitig 114083 created. Annotating repeats in reads for tig 26201/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26209/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26212/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26231/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26238/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26239/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26284/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26286/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26293/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 3099:5927 - contained in read 598913 1989- 7654 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26325/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26326/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26328/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5433:6097 - contained in read 378588 2025- 6611 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26329/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26339/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26346/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2640:5646 - contained in read 380260 219- 5699 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26349/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26372/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26392/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26405/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26410/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26425/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26436/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26438/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26448/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26466/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26467/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:979 - contained in read 303927 0- 4962 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26469/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26474/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26495/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26526/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26527/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6949:8709 - closest 5' read 395184 ( +6946) 3:8421 ( -288) saved region 6949:8709 - closest 3' read 80065 ( -474) 7423:12969 ( +4260) search for confused edges: tig 26527 read 395184 pos 3-8421 IS confused by 3' edge to read 61141 - best edge read 80065 len 989 erate 0.0435 score 945.98 - alt edge len 923 erate 0.0444 score 882.02 - absdiff 63.96 percdiff 6.9978 tig 26527 read 395184 pos 3-8421 IS confused by 3' edge to read 243923 - best edge read 80065 len 989 erate 0.0435 score 945.98 - alt edge len 604 erate 0.0531 score 571.93 - absdiff 374.05 percdiff 49.2851 saved region 6949:8709 - 2 best edges are potentially confused break tig 26527 into up to 3 pieces: 0 6449 unique (length 6449) 6449 9209 repeat (length 2760) 9209 14001 unique (length 4792) Creating Unitig 114085 Creating Unitig 114086 For tig 26527 unique region 0 6449 - 0/ 7 reads repeat/unique - unitig 114085 created. For tig 26527 repeat region 6449 9209 - 0/ 0 repeat/unique reads - no new unitig created. For tig 26527 unique region 9209 14001 - 0/ 4 reads repeat/unique - unitig 114086 created. Annotating repeats in reads for tig 26536/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6304:5552 - contained in read 395907 0- 6825 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26544/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5426:6606 - contained in read 496693 0- 7652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26546/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26569/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26591/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26614/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26615/113047. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:1618 - contained in read 401727 0- 9341 discard region 1775:4169 - contained in read 401727 0- 9341 discard region 6537:9341 - contained in read 75599 4820- 13821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26645/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26650/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26657/113047. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 3480:6919 - contained in read 403779 2407- 8178 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26665/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26673/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3620:4799 - contained in read 558975 0- 5939 discard region 6105:8183 - contained in read 404832 2514- 9994 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26697/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26715/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26741/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26755/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26760/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26761/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26783/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26792/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26841/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5139:6998 - contained in read 678616 0- 9253 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26844/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3549:228 - contained in read 524967 0- 6588 discard region 3806:232 - contained in read 524967 0- 6588 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26858/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26862/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26863/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26880/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26888/113047. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 1639:3964 - contained in read 516285 0- 9620 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26893/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26899/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26903/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26908/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26915/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26916/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4114:5511 - contained in read 422729 649- 7723 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26927/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26942/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8250:12907 - closest read 424470 ( +8245) 5:12907 ( +0) (contained) saved region 8250:12907 - closest 5' read 424470 ( +8245) 5:12907 ( +0) saved region 8250:12907 - closest 3' read 424470 ( +8245) 5:12907 ( +0) search for confused edges: discard region 8250:12907 - no confusion in best edges Annotating repeats in reads for tig 26950/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1614:437 - contained in read 227606 0- 4072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26962/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8181:5783 - contained in read 454391 0- 15320 discard region 15201:13790 - contained in read 454391 0- 15320 discard region 15964:17021 - contained in read 523659 5783- 17021 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26973/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26998/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27020/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27023/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3813:2739 - contained in read 290649 0- 7138 discard region 4288:3219 - contained in read 290649 0- 7138 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27041/113047. Annotated with 93 overlaps. Scan reads to discard spanned repeats. discard region 1205:3154 - contained in read 344381 20- 6638 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27054/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27066/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5568:6852 - closest read 304199 ( +4359) 1209:7193 ( +341) (contained) saved region 5568:6852 - closest read 304201 ( +4356) 1212:7205 ( +353) (contained) saved region 5568:6852 - closest read 304200 ( +4355) 1213:7170 ( +318) (contained) saved region 5568:6852 - closest read 304204 ( +4352) 1216:7204 ( +352) (contained) saved region 5568:6852 - closest read 304203 ( +4351) 1217:7115 ( +263) (contained) saved region 5568:6852 - closest read 304202 ( +4328) 1240:7200 ( +348) (contained) saved region 5568:6852 - closest 5' read 304201 ( +4356) 1212:7205 ( +353) saved region 5568:6852 - closest 3' read 304199 ( +4359) 1209:7193 ( +341) search for confused edges: discard region 5568:6852 - no confusion in best edges Annotating repeats in reads for tig 27068/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 4494:6562 - contained in read 409923 0- 10107 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27074/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27091/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27105/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27128/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27135/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27136/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27162/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27165/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 7669:8581 - contained in read 596240 0- 10193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27166/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27169/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5211:6941 - contained in read 579227 2240- 6941 thickest edges to the repeat regions: saved region 2239:2792 - closest read 440249 ( +2239) 0:2830 ( +38) (contained) saved region 2239:2792 - closest read 318119 ( +3) 2236:6565 ( +3773) (contained) saved region 2239:2792 - closest read 538740 ( +0) 2239:5803 ( +3011) (contained) saved region 2239:2792 - closest 5' read 318119 ( +3) 2236:6565 ( +3773) saved region 2239:2792 - closest 3' read 440249 ( +2239) 0:2830 ( +38) search for confused edges: discard region 2239:2792 - no confusion in best edges Annotating repeats in reads for tig 27179/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27180/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27188/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 4798:7027 - contained in read 468775 0- 7035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27191/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27202/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27208/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 14550:13185 - contained in read 579925 3036- 14550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27214/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27236/113047. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 393:4578 - contained in read 444075 0- 7655 discard region 6146:8522 - contained in read 293341 5395- 9775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27240/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27248/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27270/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27277/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27280/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27297/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1587:4974 - contained in read 457540 0- 8680 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27307/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4592:6418 - contained in read 412528 0- 11630 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27321/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27356/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27372/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 2614:5971 - contained in read 33916 0- 8311 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27385/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27402/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27408/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27418/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 5151:10666 - contained in read 456142 0- 11277 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27451/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27460/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27511/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27521/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27523/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27528/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27550/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27572/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27592/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27639/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27704/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27719/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27743/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27751/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27771/113047. Annotated with 606 overlaps. Scan reads to discard spanned repeats. discard region 9200:7257 - contained in read 480586 0- 8216 discard region 9363:13498 - contained in read 529566 8127- 23460 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27777/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27785/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1453:2716 - contained in read 481494 0- 8039 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27795/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27803/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27837/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27847/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27850/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27856/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27878/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27888/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27891/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27899/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27903/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3635:6720 - contained in read 549795 57- 7309 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27949/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27961/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27965/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27997/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 10453:11570 - contained in read 532569 1263- 13829 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27999/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3794:1916 - contained in read 598624 0- 3165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28010/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28024/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 740:87 - contained in read 497123 0- 7583 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28043/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28087/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 273:1663 - closest read 473898 ( +11) 262:5490 ( +3827) (contained) saved region 273:1663 - closest read 506228 ( +0) 273:5434 ( +3771) (contained) saved region 273:1663 - closest 5' read 473898 ( +11) 262:5490 ( +3827) saved region 273:1663 - closest 3' read 473898 ( +11) 262:5490 ( +3827) search for confused edges: discard region 273:1663 - no confusion in best edges Annotating repeats in reads for tig 28095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28117/113047. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 2072:3689 - contained in read 182485 0- 7847 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28134/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28162/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28169/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28180/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2684:3661 - contained in read 507115 0- 8180 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28198/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28204/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28205/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28214/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2717:3999 - contained in read 295318 0- 5317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28230/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28234/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28243/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28253/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8631:9879 - contained in read 276111 1261- 10337 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28262/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28280/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28306/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28309/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28313/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2199:7360 - contained in read 514630 29- 7360 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28314/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28323/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 6064:8003 - contained in read 515570 0- 10877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28329/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 740:3 - contained in read 625352 0- 9462 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28356/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3745:0 - contained in read 517329 0- 6209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28361/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28362/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28413/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6700:8144 - contained in read 521006 3538- 9816 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28422/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28434/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28435/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28446/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5900:3101 - contained in read 522816 0- 5885 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28452/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28485/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2746:7090 - contained in read 602567 0- 8607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28506/113047. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2220:3156 - contained in read 258854 0- 11388 discard region 4161:9693 - contained in read 258854 0- 11388 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28507/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28531/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28535/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28537/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28543/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28558/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1293:6078 - contained in read 579170 287- 6078 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28578/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28592/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28596/113047. Annotated with 216 overlaps. Scan reads to discard spanned repeats. discard region 1017:3654 - contained in read 561516 0- 5477 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28600/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 5401:8574 - contained in read 669764 2536- 8574 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28615/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28626/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5596:7925 - closest 5' read 701626 ( +746) 4850:7370 ( -555) saved region 5596:7925 - closest 3' read 534833 ( -167) 5763:12339 ( +4414) search for confused edges: tig 28626 read 534835 pos 5769-12363 IS confused by 5' edge to read 407488 - best edge read 124367 len 1441 erate 0.0688 score 1341.86 - alt edge len 2085 erate 0.0571 score 1965.95 - absdiff 624.09 percdiff 37.7342 saved region 5596:7925 - 1 best edges are potentially confused break tig 28626 into up to 3 pieces: 0 5096 unique (length 5096) 5096 8425 repeat (length 3329) 8425 12387 unique (length 3962) Creating Unitig 114087 Creating Unitig 114088 Creating Unitig 114089 For tig 28626 unique region 0 5096 - 0/ 5 reads repeat/unique - unitig 114087 created. For tig 28626 repeat region 5096 8425 - 11/ 0 reads repeat/unique - unitig 114088 created. For tig 28626 unique region 8425 12387 - 0/ 8 reads repeat/unique - unitig 114089 created. Annotating repeats in reads for tig 28627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28650/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28675/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 3837:7151 - contained in read 281015 0- 8446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28695/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28725/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3306:5782 - contained in read 540962 0- 5782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28730/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28751/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28775/113047. Annotated with 118 overlaps. Scan reads to discard spanned repeats. discard region 2451:7998 - contained in read 545211 0- 16916 discard region 8348:16916 - contained in read 545211 0- 16916 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28818/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28820/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28829/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28832/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28850/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28887/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9352:10599 - closest read 702862 ( +5003) 4349:10599 ( +0) (contained) saved region 9352:10599 - closest 5' read 702862 ( +5003) 4349:10599 ( +0) saved region 9352:10599 - closest 3' read 702862 ( +5003) 4349:10599 ( +0) search for confused edges: discard region 9352:10599 - no confusion in best edges Annotating repeats in reads for tig 28895/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28903/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28935/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28947/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29005/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4015:4555 - contained in read 628590 0- 6122 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29059/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29073/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29079/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 323:7533 - closest 5' read 436777 ( +287) 36:5716 ( -1817) saved region 323:7533 - closest 3' read 654531 ( -389) 712:7596 ( +63) search for confused edges: discard region 323:7533 - no confusion in best edges Annotating repeats in reads for tig 29081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29126/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29129/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29162/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29194/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29231/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29244/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 73:2167 - contained in read 104209 0- 5451 discard region 3328:5258 - contained in read 574702 299- 8450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29248/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29272/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4353:6479 - contained in read 576483 21- 6479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29322/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3791:9441 - closest read 324049 ( +202) 3589:13291 ( +3850) (contained) saved region 3791:9441 - closest 5' read 324049 ( +202) 3589:13291 ( +3850) saved region 3791:9441 - closest 3' read 324049 ( +202) 3589:13291 ( +3850) search for confused edges: discard region 3791:9441 - no confusion in best edges Annotating repeats in reads for tig 29329/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6577:8177 - contained in read 580382 0- 11747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29352/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29406/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6178:5054 - contained in read 584875 0- 6134 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29411/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 6370:9670 - contained in read 283167 3860- 9670 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29413/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 3715:8053 - contained in read 168334 1018- 8159 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29425/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29433/113047. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 1443:3485 - contained in read 414469 0- 6098 discard region 5460:8106 - contained in read 470464 3783- 11111 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29439/113047. Annotated with 128 overlaps. Scan reads to discard spanned repeats. discard region 1122:2160 - contained in read 586811 0- 6179 discard region 2992:5693 - contained in read 604984 1128- 7291 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29474/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29482/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29484/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29502/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29517/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29537/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29550/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29562/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29565/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6261:9233 - closest read 576168 ( +67) 6194:9974 ( +741) (contained) saved region 6261:9233 - closest 5' read 576168 ( +67) 6194:9974 ( +741) saved region 6261:9233 - closest 3' read 576168 ( +67) 6194:9974 ( +741) search for confused edges: discard region 6261:9233 - no confusion in best edges Annotating repeats in reads for tig 29577/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:1733 - contained in read 664746 0- 5070 discard region 2629:1955 - contained in read 664746 0- 5070 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29613/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1979:6107 - contained in read 628345 0- 15231 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29647/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29701/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29708/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29725/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6220:6768 - contained in read 135858 0- 9984 discard region 14714:15598 - contained in read 604413 7072- 16447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29764/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29769/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2433:5163 - contained in read 321365 0- 7254 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29778/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29865/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29921/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29938/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5333:4624 - contained in read 25254 0- 5473 discard region 5333:4625 - contained in read 25254 0- 5473 discard region 5353:4628 - contained in read 25254 0- 5473 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29946/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29948/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30131/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30136/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2314:3182 - contained in read 286848 0- 7315 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30153/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30164/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30180/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30263/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 609:0 - contained in read 635100 0- 7363 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30320/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30336/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30466/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30495/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30522/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5008:5731 - contained in read 530510 3886- 6946 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30559/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30573/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30815/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30842/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30867/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30875/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30911/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30929/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:3281 - contained in read 676891 0- 6163 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31112/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31113/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31167/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:6488 - contained in read 558374 0- 7588 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31228/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31330/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31604/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31648/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31652/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31662/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31672/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2163:2717 - closest read 672702 ( +2163) 0:2717 ( +0) (contained) saved region 2163:2717 - closest 5' read 672702 ( +2163) 0:2717 ( +0) saved region 2163:2717 - closest 3' read 672702 ( +2163) 0:2717 ( +0) search for confused edges: discard region 2163:2717 - no confusion in best edges Annotating repeats in reads for tig 31673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31694/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31713/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31714/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31715/113047. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 361:4655 - closest 5' read 7129 ( +345) 16:2393 ( -2262) saved region 361:4655 - closest 3' read 465463 ( -319) 680:7139 ( +2484) search for confused edges: discard region 361:4655 - no confusion in best edges Annotating repeats in reads for tig 31718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31720/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31732/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31751/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31764/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2434:4031 - contained in read 8916 0- 6477 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31767/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31782/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4044:5405 - contained in read 10514 0- 6286 discard region 5592:6289 - contained in read 10513 21- 6289 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31786/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31787/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6387:4705 - contained in read 268424 0- 5310 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31791/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31801/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31804/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31808/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31809/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31823/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31832/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31836/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31842/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6259:4516 - contained in read 279799 0- 5402 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31856/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31857/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2795:4127 - contained in read 13881 0- 6966 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31879/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31886/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31890/113047. Annotated with 96 overlaps. Scan reads to discard spanned repeats. discard region 0:626 - contained in read 380561 0- 1909 discard region 6665:8262 - contained in read 14968 4832- 10612 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31891/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5281:4394 - contained in read 257731 844- 5148 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31904/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31930/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31931/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31950/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31956/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31965/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31973/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31982/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31989/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31993/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32006/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6069:6805 - contained in read 157187 0- 12405 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32023/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32026/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32030/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4264:3750 - contained in read 237008 0- 6149 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32043/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32068/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4335:0 - contained in read 22576 0- 7519 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32108/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32128/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32137/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32140/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32150/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32165/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32167/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32170/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32189/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32214/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32229/113047. Annotated with 862 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:14385 - closest read 521396 ( +0) 0:14613 ( +228) (contained) saved region 0:14385 - closest 5' read 521396 ( +0) 0:14613 ( +228) saved region 0:14385 - closest 3' read 521396 ( +0) 0:14613 ( +228) search for confused edges: discard region 0:14385 - no confusion in best edges Annotating repeats in reads for tig 32232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32258/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32286/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32315/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32321/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32326/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32332/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32341/113047. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 6404:10956 - contained in read 229821 0- 15675 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32360/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2779:6134 - closest read 210746 ( +115) 2664:6601 ( +467) (contained) saved region 2779:6134 - closest read 233453 ( +104) 2675:7841 ( +1707) (contained) saved region 2779:6134 - closest read 492330 ( +0) 2779:6257 ( +123) (contained) saved region 2779:6134 - closest 5' read 233453 ( +104) 2675:7841 ( +1707) saved region 2779:6134 - closest 3' read 210746 ( +115) 2664:6601 ( +467) search for confused edges: discard region 2779:6134 - no confusion in best edges Annotating repeats in reads for tig 32366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32371/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32382/113047. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 3043:10143 - contained in read 34372 49- 11707 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32385/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 1209:3216 - contained in read 688392 0- 6664 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32386/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32387/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6236:7299 - contained in read 435867 0- 8267 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32390/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32401/113047. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 355:1120 - contained in read 511428 0- 6165 discard region 1172:5398 - contained in read 511428 0- 6165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32406/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32429/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32443/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32445/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32455/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32457/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32476/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 852:2801 - contained in read 38155 0- 7120 discard region 8457:5190 - contained in read 38155 0- 7120 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32479/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32482/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32485/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1894:355 - contained in read 38608 0- 6523 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32498/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1004 - contained in read 39098 0- 6047 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32509/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32510/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32554/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7254:8008 - closest 5' read 299579 ( +7252) 2:7984 ( -24) saved region 7254:8008 - closest 3' read 41439 ( -144) 7398:13382 ( +5374) search for confused edges: tig 32554 read 41441 pos 7414-13405 IS confused by 5' edge to read 91011 - best edge read 299580 len 549 erate 0.0622 score 514.85 - alt edge len 542 erate 0.0570 score 511.11 - absdiff 3.75 percdiff 0.7303 tig 32554 read 41441 pos 7414-13405 IS confused by 5' edge to read 272001 - best edge read 299580 len 549 erate 0.0622 score 514.85 - alt edge len 510 erate 0.0631 score 477.82 - absdiff 37.03 percdiff 7.4613 tig 32554 read 41441 pos 7414-13405 IS confused by 5' edge to read 561307 - best edge read 299580 len 549 erate 0.0622 score 514.85 - alt edge len 547 erate 0.0699 score 508.76 - absdiff 6.09 percdiff 1.1894 saved region 7254:8008 - 3 best edges are potentially confused break tig 32554 into up to 3 pieces: 0 6754 unique (length 6754) 6754 8508 repeat (length 1754) 8508 13411 unique (length 4903) Creating Unitig 114090 Creating Unitig 114091 For tig 32554 unique region 0 6754 - 0/ 11 reads repeat/unique - unitig 114090 created. For tig 32554 repeat region 6754 8508 - 0/ 0 repeat/unique reads - no new unitig created. For tig 32554 unique region 8508 13411 - 0/ 7 reads repeat/unique - unitig 114091 created. Annotating repeats in reads for tig 32556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32561/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32567/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32570/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32574/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2606:3514 - contained in read 42360 0- 6241 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32585/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32646/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32668/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32680/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32690/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32694/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 2382:4263 - contained in read 47444 9- 5424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32703/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32735/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32739/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32744/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32765/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32771/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32788/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32793/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32797/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32804/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32820/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32823/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6362:5258 - contained in read 587983 0- 7753 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32839/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5954:5332 - contained in read 366962 0- 6434 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32855/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32870/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 1513:2250 - contained in read 54744 0- 6957 discard region 2752:4828 - contained in read 54744 0- 6957 discard region 6017:11459 - contained in read 54742 5185- 12196 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32871/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32883/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32891/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32895/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32897/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1439:2117 - contained in read 55594 0- 2971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32907/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32919/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32938/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32981/113047. Annotated with 85 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5742:10669 - closest read 442618 ( +0) 5742:12077 ( +1408) (contained) saved region 5742:10669 - closest 5' read 442618 ( +0) 5742:12077 ( +1408) saved region 5742:10669 - closest 3' read 442618 ( +0) 5742:12077 ( +1408) search for confused edges: tig 32981 read 59458 pos 0-6439 IS confused by 3' edge to read 146985 - best edge read 442618 len 680 erate 0.0648 score 635.94 - alt edge len 674 erate 0.0698 score 626.95 - absdiff 8.98 percdiff 1.4223 saved region 5742:10669 - 1 best edges are potentially confused break tig 32981 into up to 3 pieces: 0 5242 unique (length 5242) 5242 11169 repeat (length 5927) 11169 12077 unique (length 908) Creating Unitig 114092 Creating Unitig 114093 Creating Unitig 114094 For tig 32981 unique region 0 5242 - 0/ 6 reads repeat/unique - unitig 114092 created. For tig 32981 repeat region 5242 11169 - 18/ 0 reads repeat/unique - unitig 114094 created. For tig 32981 unique region 11169 12077 - 0/ 4 reads repeat/unique - unitig 114093 created. Annotating repeats in reads for tig 32993/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33002/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33005/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 3593:6332 - contained in read 60338 0- 7773 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33012/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33014/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33020/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33022/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33024/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33033/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33047/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33063/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33070/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33072/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33103/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33110/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33118/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33119/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33132/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33167/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33186/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33190/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33207/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33224/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33239/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33256/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33257/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33261/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33265/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33270/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6065:7201 - contained in read 71265 0- 8758 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33271/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33278/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33280/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33284/113047. Annotated with 101 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5003:13955 - closest 5' read 524580 ( +425) 4578:12350 ( -1605) saved region 5003:13955 - closest 3' read 62969 ( -3240) 8243:13955 ( +0) search for confused edges: tig 33284 read 71937 pos 377-11998 IS confused by 3' edge to read 634256 - best edge read 504086 len 1616 erate 0.0560 score 1525.50 - alt edge len 1459 erate 0.0657 score 1363.14 - absdiff 162.36 percdiff 11.2413 saved region 5003:13955 - 1 best edges are potentially confused break tig 33284 into up to 2 pieces: 0 4503 unique (length 4503) 4503 14221 repeat (length 9718) Creating Unitig 114095 Creating Unitig 114096 For tig 33284 unique region 0 4503 - 0/ 5 reads repeat/unique - unitig 114095 created. For tig 33284 repeat region 4503 14221 - 38/ 0 reads repeat/unique - unitig 114096 created. Annotating repeats in reads for tig 33303/113047. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 7620:8387 - contained in read 497161 5008- 11463 discard region 9400:10553 - contained in read 497161 5008- 11463 thickest edges to the repeat regions: saved region 5177:6505 - closest read 497161 ( +169) 5008:11463 ( +4958) (contained) saved region 5177:6505 - closest read 497162 ( +167) 5010:10783 ( +4278) (contained) saved region 5177:6505 - closest 5' read 497161 ( +169) 5008:11463 ( +4958) saved region 5177:6505 - closest 3' read 497161 ( +169) 5008:11463 ( +4958) search for confused edges: discard region 5177:6505 - no confusion in best edges Annotating repeats in reads for tig 33308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33332/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33336/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33338/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33350/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33368/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33383/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33391/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33393/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33398/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33427/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4657:5829 - closest read 635843 ( +4657) 0:5996 ( +167) (contained) saved region 4657:5829 - closest read 78647 ( +0) 4657:11259 ( +5430) (contained) saved region 4657:5829 - closest read 78646 ( +0) 4657:11256 ( +5427) (contained) saved region 4657:5829 - closest 5' read 78647 ( +0) 4657:11259 ( +5430) saved region 4657:5829 - closest 3' read 635843 ( +4657) 0:5996 ( +167) search for confused edges: discard region 4657:5829 - no confusion in best edges Annotating repeats in reads for tig 33432/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33434/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33446/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33447/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33454/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33473/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33483/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33489/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33494/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33511/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33521/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 8360:11060 - contained in read 488820 5084- 11895 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33533/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33537/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33541/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33575/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33593/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33598/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33599/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33601/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33606/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33607/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33615/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33619/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33622/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33623/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33624/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33630/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33678/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33683/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33687/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33704/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33722/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33725/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33728/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33741/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33759/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 270:3423 - contained in read 92063 0- 7236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33790/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33791/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33795/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33818/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33822/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33849/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33851/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33854/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2800:5653 - contained in read 482580 0- 7596 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33856/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33865/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33870/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33888/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33902/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33903/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1263:3790 - contained in read 528128 0- 5803 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33910/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33918/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33929/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33932/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33935/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33936/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33940/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33983/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 33998/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34004/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34012/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 7201:7987 - contained in read 529726 144- 13231 discard region 11056:12926 - contained in read 529726 144- 13231 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34034/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34053/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3669:4646 - contained in read 199827 0- 5591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34061/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34062/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34066/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34075/113047. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 2902:6124 - contained in read 667248 1245- 9147 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34082/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34089/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34168/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34180/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34195/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34196/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34212/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34223/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34236/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34239/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34266/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34267/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2407:3429 - contained in read 114998 0- 4086 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34283/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:934 - contained in read 115921 0- 5738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34289/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34310/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34332/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34349/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1636 - contained in read 118391 0- 7466 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34353/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3573:489 - contained in read 655064 0- 7413 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34370/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34378/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34389/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34393/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34394/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34396/113047. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6048:9507 - closest read 688907 ( +6048) 0:9950 ( +443) (contained) saved region 6048:9507 - closest 5' read 688907 ( +6048) 0:9950 ( +443) saved region 6048:9507 - closest 3' read 688907 ( +6048) 0:9950 ( +443) search for confused edges: discard region 6048:9507 - no confusion in best edges Annotating repeats in reads for tig 34398/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34407/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34412/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6078:6845 - contained in read 121382 0- 9375 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34418/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34419/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34426/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34433/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34449/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34467/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34480/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34481/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34489/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34508/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34514/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2795:4120 - contained in read 126055 4- 6038 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34531/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 2268:7496 - contained in read 126570 1585- 15082 discard region 9559:13072 - contained in read 126570 1585- 15082 discard region 14115:15082 - contained in read 126570 1585- 15082 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34546/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34552/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:539 - contained in read 146640 0- 6105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34555/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34566/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34583/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34584/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34597/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34617/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34619/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1600:3561 - contained in read 7569 0- 5782 discard region 4147:5062 - contained in read 7569 0- 5782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34630/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34632/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34634/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34646/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34653/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2636:7406 - contained in read 131924 690- 7406 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34660/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34661/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34700/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34718/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34724/113047. Annotated with 106 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7963:13334 - closest 5' read 134736 ( +5166) 2797:8811 ( -4523) saved region 7963:13334 - closest 3' read 253399 ( -125) 8088:13971 ( +637) search for confused edges: discard region 7963:13334 - no confusion in best edges Annotating repeats in reads for tig 34725/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6389:7051 - contained in read 134745 666- 7795 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34731/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34741/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34747/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1763:5281 - closest 5' read 701110 ( +1763) 0:5272 ( -9) saved region 1763:5281 - closest 3' read 367180 ( -17) 1780:5420 ( +139) search for confused edges: discard region 1763:5281 - no confusion in best edges Annotating repeats in reads for tig 34757/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34762/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34766/113047. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 823:3237 - contained in read 136543 0- 6820 discard region 3603:5026 - contained in read 136543 0- 6820 discard region 5071:7200 - contained in read 620303 2721- 7200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34786/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34860/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34873/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34888/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34895/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34905/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3178:4603 - contained in read 502571 1772- 7854 discard region 6028:4627 - contained in read 502571 1772- 7854 discard region 6353:5058 - contained in read 502571 1772- 7854 discard region 7873:7017 - contained in read 502571 1772- 7854 discard region 7873:7092 - contained in read 502571 1772- 7854 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34923/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34927/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34959/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34969/113047. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 1272:8439 - contained in read 360723 0- 13561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34974/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34996/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 34997/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4418:1807 - contained in read 600262 0- 6514 discard region 4744:1982 - contained in read 600262 0- 6514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35016/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35031/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35033/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 317:1260 - contained in read 367292 0- 4799 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35042/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35087/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35096/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35110/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3054:2526 - contained in read 579098 0- 6699 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35114/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35133/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35152/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35156/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35171/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35175/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35182/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35195/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35197/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:2303 - contained in read 702537 0- 6389 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35208/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6099:9177 - closest read 158494 ( +0) 6099:11200 ( +2023) (contained) saved region 6099:9177 - closest 5' read 158494 ( +0) 6099:11200 ( +2023) saved region 6099:9177 - closest 3' read 158494 ( +0) 6099:11200 ( +2023) search for confused edges: discard region 6099:9177 - no confusion in best edges Annotating repeats in reads for tig 35222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35226/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35229/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35256/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 14381:14913 - contained in read 160845 14- 15998 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35259/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35263/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35266/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35281/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35285/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35333/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35348/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4526:5269 - closest read 165437 ( +4526) 0:5269 ( +0) (contained) saved region 4526:5269 - closest read 722191 ( +0) 4526:13074 ( +7805) (contained) saved region 4526:5269 - closest read 722189 ( +0) 4526:13062 ( +7793) (contained) saved region 4526:5269 - closest 5' read 722191 ( +0) 4526:13074 ( +7805) saved region 4526:5269 - closest 3' read 165437 ( +4526) 0:5269 ( +0) search for confused edges: discard region 4526:5269 - no confusion in best edges Annotating repeats in reads for tig 35349/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 300:957 - contained in read 165438 0- 5209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35355/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35363/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35376/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35387/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35407/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35415/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35418/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35424/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35430/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35442/113047. Annotated with 264 overlaps. Scan reads to discard spanned repeats. discard region 529:3024 - contained in read 588264 0- 10007 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35452/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35465/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5200:4648 - contained in read 170046 0- 5200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35486/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35503/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35521/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35530/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35532/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35541/113047. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 55:1481 - contained in read 174342 0- 5366 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35548/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35550/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35573/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35588/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35597/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35607/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35612/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35613/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35620/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35621/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35633/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35644/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35660/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35669/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35686/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35709/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35722/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35723/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35753/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35794/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35815/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35819/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35843/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35866/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35876/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35909/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35924/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35937/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35945/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35946/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2008:1488 - contained in read 191665 0- 2108 discard region 2104:1491 - contained in read 191665 0- 2108 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35979/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3449:4752 - contained in read 130980 88- 6102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 35995/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36008/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36016/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36027/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5981:6842 - closest read 456894 ( +5981) 0:6842 ( +0) (contained) saved region 5981:6842 - closest 5' read 456894 ( +5981) 0:6842 ( +0) saved region 5981:6842 - closest 3' read 456894 ( +5981) 0:6842 ( +0) search for confused edges: discard region 5981:6842 - no confusion in best edges Annotating repeats in reads for tig 36028/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36064/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36078/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36080/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36086/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36100/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36102/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36107/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36134/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36138/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36149/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36171/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36172/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36174/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36182/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36185/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36192/113047. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 804:4715 - closest read 474613 ( +804) 0:4715 ( +0) (contained) saved region 804:4715 - closest read 202578 ( +290) 514:5249 ( +534) (contained) saved region 804:4715 - closest read 202576 ( +121) 683:5238 ( +523) (contained) saved region 804:4715 - closest 5' read 202578 ( +290) 514:5249 ( +534) saved region 804:4715 - closest 3' read 474613 ( +804) 0:4715 ( +0) search for confused edges: discard region 804:4715 - no confusion in best edges Annotating repeats in reads for tig 36197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36200/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1484:2141 - contained in read 202912 0- 6630 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36235/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36237/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36257/113047. Annotated with 45 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1526:7988 - closest 5' read 205260 ( +1526) 0:5429 ( -2559) saved region 1526:7988 - closest 3' read 580685 ( -950) 2476:10085 ( +2097) search for confused edges: discard region 1526:7988 - no confusion in best edges Annotating repeats in reads for tig 36260/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36277/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1431:0 - contained in read 636278 0- 6211 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36279/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36309/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36316/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36322/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36329/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36332/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3065:1914 - contained in read 182380 0- 7257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36358/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36362/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36370/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36381/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36394/113047. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 2483:4519 - contained in read 274460 0- 6109 discard region 5746:9270 - contained in read 592621 3093- 11506 discard region 13262:15709 - contained in read 211535 12163- 18006 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36411/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36412/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36435/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36482/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36512/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36520/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36526/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1837:4795 - contained in read 217672 0- 10895 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36527/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36531/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4472:6888 - contained in read 668912 0- 10210 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36533/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5090:5873 - contained in read 217876 9- 5873 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36538/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36587/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36604/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36612/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36637/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36656/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36658/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36667/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36701/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1687:4092 - contained in read 232441 0- 14087 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36710/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36748/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 8158:14111 - contained in read 226983 6750- 19078 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36761/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36769/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36774/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36784/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36786/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36815/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36827/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36833/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36848/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36857/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36868/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36894/113047. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 0:3059 - contained in read 340722 0- 5700 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36896/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36904/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5172:4036 - contained in read 234212 0- 5809 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36907/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36913/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36928/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36943/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36952/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36966/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36967/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2499:3151 - contained in read 376230 0- 12355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36981/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36994/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 36997/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2890:6720 - closest 5' read 238508 ( +2890) 0:6714 ( -6) saved region 2890:6720 - closest 3' read 660937 ( -403) 3293:9378 ( +2658) search for confused edges: tig 36997 read 238508 pos 0-6714 IS confused by 3' edge to read 133722 - best edge read 660937 len 3392 erate 0.0398 score 3257.00 - alt edge len 1263 erate 0.0297 score 1225.49 - absdiff 2031.51 percdiff 90.6421 tig 36997 read 238508 pos 0-6714 IS confused by 3' edge to read 507908 - best edge read 660937 len 3392 erate 0.0398 score 3257.00 - alt edge len 2311 erate 0.0594 score 2173.73 - absdiff 1083.27 percdiff 39.8942 tig 36997 read 238508 pos 0-6714 IS confused by 3' edge to read 507909 - best edge read 660937 len 3392 erate 0.0398 score 3257.00 - alt edge len 2280 erate 0.0589 score 2145.71 - absdiff 1111.29 percdiff 41.1383 tig 36997 read 238508 pos 0-6714 IS confused by 3' edge to read 507910 - best edge read 660937 len 3392 erate 0.0398 score 3257.00 - alt edge len 2333 erate 0.0554 score 2203.75 - absdiff 1053.25 percdiff 38.5752 tig 36997 read 238508 pos 0-6714 IS confused by 3' edge to read 507911 - best edge read 660937 len 3392 erate 0.0398 score 3257.00 - alt edge len 2330 erate 0.0589 score 2192.76 - absdiff 1064.24 percdiff 39.0562 tig 36997 read 238508 pos 0-6714 IS confused by 3' edge to read 683313 - best edge read 660937 len 3392 erate 0.0398 score 3257.00 - alt edge len 1615 erate 0.0264 score 1572.36 - absdiff 1684.63 percdiff 69.7663 saved region 2890:6720 - 6 best edges are potentially confused break tig 36997 into up to 3 pieces: 0 2390 unique (length 2390) 2390 7220 repeat (length 4830) 7220 9378 unique (length 2158) Creating Unitig 114097 Creating Unitig 114098 Creating Unitig 114099 For tig 36997 unique region 0 2390 - 0/ 1 reads repeat/unique - unitig 114097 created. For tig 36997 repeat region 2390 7220 - 1/ 0 reads repeat/unique - unitig 114099 created. For tig 36997 unique region 7220 9378 - 0/ 9 reads repeat/unique - unitig 114098 created. Annotating repeats in reads for tig 37005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37007/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1098:7859 - contained in read 600933 9- 9289 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37009/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37067/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37084/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37097/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37106/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37109/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37127/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37132/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37175/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37181/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37188/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37192/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37197/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37210/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 592:9171 - closest read 488176 ( +592) 0:9573 ( +402) (contained) saved region 592:9171 - closest read 488178 ( +589) 3:9588 ( +417) (contained) saved region 592:9171 - closest read 488177 ( +563) 29:9586 ( +415) (contained) saved region 592:9171 - closest read 331158 ( +25) 567:9171 ( +0) (contained) saved region 592:9171 - closest 5' read 488178 ( +589) 3:9588 ( +417) saved region 592:9171 - closest 3' read 488176 ( +592) 0:9573 ( +402) search for confused edges: discard region 592:9171 - no confusion in best edges Annotating repeats in reads for tig 37218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37220/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37238/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37242/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37244/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37245/113047. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 141:3861 - closest read 676395 ( +0) 141:6646 ( +2785) (contained) saved region 141:3861 - closest read 676396 ( +0) 141:6643 ( +2782) (contained) saved region 141:3861 - closest 5' read 676395 ( +0) 141:6646 ( +2785) saved region 141:3861 - closest 3' read 676395 ( +0) 141:6646 ( +2785) search for confused edges: discard region 141:3861 - no confusion in best edges Annotating repeats in reads for tig 37249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37268/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37271/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4061:1100 - contained in read 670345 0- 6649 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37273/113047. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 555:4262 - closest read 304745 ( +555) 0:4290 ( +28) (contained) saved region 555:4262 - closest read 332091 ( +0) 555:4262 ( +0) (contained) saved region 555:4262 - closest 5' read 304745 ( +555) 0:4290 ( +28) saved region 555:4262 - closest 3' read 304745 ( +555) 0:4290 ( +28) search for confused edges: discard region 555:4262 - no confusion in best edges Annotating repeats in reads for tig 37276/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37296/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37343/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37346/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37363/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37413/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37414/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37416/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37431/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37459/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37465/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37498/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37508/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1752:4311 - contained in read 595769 1- 7061 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37522/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37540/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37553/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37554/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37581/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37603/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37605/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37606/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1618:3187 - contained in read 269172 0- 9053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37609/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37610/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4216:5229 - contained in read 256272 0- 7653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37631/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37646/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37653/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37684/113047. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 1632:3414 - contained in read 661092 0- 7337 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37700/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37716/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37736/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37797/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37811/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37823/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2787:3953 - contained in read 212925 0- 9662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37826/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37828/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37835/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2078:2783 - contained in read 704441 0- 6207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37852/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2258:1673 - contained in read 253929 0- 8771 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37868/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 2534:3097 - contained in read 280329 0- 7000 discard region 3800:4360 - contained in read 280329 0- 7000 discard region 4726:6451 - contained in read 280329 0- 7000 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37874/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37889/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37906/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37907/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37957/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37959/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37978/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37982/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4606:4094 - contained in read 285661 0- 4606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37984/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37990/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38015/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38033/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38039/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38055/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38065/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38091/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38123/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4190:3183 - contained in read 45329 0- 6590 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38157/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38176/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38200/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38216/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38241/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2683:4055 - contained in read 235603 0- 5702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38246/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38252/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38255/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38294/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38317/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38318/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38374/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38406/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38418/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38420/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38435/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38448/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38452/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38470/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38514/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38518/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38545/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38552/113047. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3948:4494 - contained in read 639246 0- 7064 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38577/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38618/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11898:9341 - contained in read 86745 5656- 11582 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38625/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38626/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38629/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38639/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38642/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38647/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38657/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38659/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38672/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38676/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38679/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38685/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38705/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38707/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38727/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38730/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38737/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38772/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38801/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1691 - contained in read 16613 0- 4054 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38826/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5539:7297 - contained in read 280839 620- 9104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38852/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38890/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38905/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38916/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1260:1772 - contained in read 327270 0- 2341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38917/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38922/113047. Annotated with 383 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8722 - closest 5' read 440409 ( +0) 0:7951 ( -771) saved region 0:8722 - closest 3' read 327723 ( -4054) 4054:9901 ( +1179) search for confused edges: tig 38922 read 327723 pos 4054-9901 IS confused by 5' edge to read 54247 - best edge read 440409 len 3802 erate 0.0746 score 3518.37 - alt edge len 4569 erate 0.0737 score 4232.26 - absdiff 713.89 percdiff 18.4216 saved region 0:8722 - 1 best edges are potentially confused break tig 38922 into up to 2 pieces: 0 9222 repeat (length 9222) 9222 10048 unique (length 826) Creating Unitig 114100 Creating Unitig 114101 For tig 38922 repeat region 0 9222 - 52/ 0 reads repeat/unique - unitig 114100 created. For tig 38922 unique region 9222 10048 - 0/ 3 reads repeat/unique - unitig 114101 created. Annotating repeats in reads for tig 38935/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38964/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38985/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38993/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 38998/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 419:1458 - contained in read 331144 0- 6296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39021/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39024/113047. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 2726:5661 - contained in read 333058 0- 7042 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39032/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39038/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2700:2145 - contained in read 333490 0- 8547 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39042/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8113:8956 - closest read 521382 ( +8112) 1:8956 ( +0) (contained) saved region 8113:8956 - closest read 521379 ( +8109) 4:8957 ( +1) (contained) saved region 8113:8956 - closest 5' read 521379 ( +8109) 4:8957 ( +1) saved region 8113:8956 - closest 3' read 521382 ( +8112) 1:8956 ( +0) search for confused edges: discard region 8113:8956 - no confusion in best edges Annotating repeats in reads for tig 39045/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39049/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39058/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39071/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39075/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39088/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2484:3284 - contained in read 335852 11- 7388 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39098/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39105/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39116/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39121/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39124/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39125/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39138/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4533:5261 - contained in read 157096 0- 6603 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39145/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39157/113047. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 2854:6310 - contained in read 338300 0- 8286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39162/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5866:4492 - contained in read 338454 954- 8342 discard region 6181:4517 - contained in read 338454 954- 8342 discard region 6192:5137 - contained in read 338454 954- 8342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39169/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39180/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39183/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39232/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39274/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39275/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39283/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39297/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39299/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39302/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39326/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39334/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39344/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39375/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39403/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39412/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39423/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39428/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39440/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39442/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39466/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39470/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39490/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39496/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39516/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39524/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39579/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39584/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3598:3013 - contained in read 682423 0- 7766 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39595/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39618/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39631/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 782:2134 - contained in read 638635 0- 6181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39688/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39699/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39702/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1361:2272 - contained in read 362374 0- 5634 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39738/113047. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 7088:8339 - contained in read 209173 8- 8656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39740/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39754/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39764/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39780/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39785/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39787/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39789/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39798/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39806/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39810/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39812/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39836/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39863/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5222:5870 - contained in read 369500 6- 6129 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39864/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39873/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39882/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39888/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39893/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39897/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39911/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39965/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39968/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39970/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2514:4001 - contained in read 344817 0- 5584 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39973/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39975/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39979/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 39991/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40002/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40036/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40038/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40044/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40045/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:2059 - contained in read 379704 0- 5841 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40064/113047. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:3805 - contained in read 379458 0- 15428 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40084/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40093/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40117/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40133/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5523:7314 - closest 5' read 215240 ( +4521) 1002:6496 ( -818) saved region 5523:7314 - closest 3' read 643377 ( -2) 5525:7314 ( +0) search for confused edges: discard region 5523:7314 - no confusion in best edges Annotating repeats in reads for tig 40137/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40154/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40167/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40173/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40179/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40203/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40209/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40221/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40245/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40271/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40301/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40323/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40339/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40341/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40347/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40359/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40399/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40417/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40441/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40474/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40485/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40493/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40500/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40537/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40566/113047. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1956:9326 - closest 5' read 574882 ( +646) 1310:6833 ( -2493) saved region 1956:9326 - closest 3' read 402455 ( -3478) 5434:12140 ( +2814) search for confused edges: discard region 1956:9326 - no confusion in best edges Annotating repeats in reads for tig 40582/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40610/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40638/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40714/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40763/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40824/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40925/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40933/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40934/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40939/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40963/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40970/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40973/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40977/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 40988/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41003/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41006/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41018/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41051/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41053/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41070/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41080/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41083/113047. Annotated with 197 overlaps. Scan reads to discard spanned repeats. discard region 3723:12023 - contained in read 426559 0- 15811 discard region 16522:17702 - contained in read 437578 13669- 18893 thickest edges to the repeat regions: saved region 13746:15811 - closest read 426559 (+13746) 0:15811 ( +0) (contained) saved region 13746:15811 - closest read 339868 ( +3302) 10444:16158 ( +347) (contained) saved region 13746:15811 - closest read 437578 ( +77) 13669:18893 ( +3082) (contained) saved region 13746:15811 - closest read 394273 ( +49) 13697:25647 ( +9836) (contained) saved region 13746:15811 - closest read 451562 ( +23) 13723:17191 ( +1380) (contained) saved region 13746:15811 - closest read 279227 ( +4) 13742:17599 ( +1788) (contained) saved region 13746:15811 - closest 5' read 394273 ( +49) 13697:25647 ( +9836) saved region 13746:15811 - closest 3' read 426559 (+13746) 0:15811 ( +0) search for confused edges: discard region 13746:15811 - no confusion in best edges Annotating repeats in reads for tig 41088/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41095/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41123/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41127/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1516:2589 - contained in read 593687 0- 3304 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41144/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41158/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41178/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12366:14026 - contained in read 431525 848- 18114 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41187/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41214/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41215/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41249/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41277/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41282/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4260:6419 - contained in read 559987 0- 7872 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41313/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41321/113047. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 7634:12110 - contained in read 699758 6825- 12725 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41335/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41345/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41363/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41376/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41404/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41406/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41427/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41429/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41450/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41456/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6883:6323 - contained in read 445111 0- 6883 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41461/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41476/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41486/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41491/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41526/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1108:4332 - contained in read 542612 0- 9412 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41551/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41563/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41585/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41597/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41649/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41651/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41663/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41673/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41692/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41770/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41800/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41804/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 561:2565 - contained in read 458917 0- 3660 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41805/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3139:6105 - closest read 569686 ( +3139) 0:6238 ( +133) (contained) saved region 3139:6105 - closest read 569687 ( +3139) 0:6235 ( +130) (contained) saved region 3139:6105 - closest read 569685 ( +3139) 0:6232 ( +127) (contained) saved region 3139:6105 - closest read 569683 ( +3139) 0:6231 ( +126) (contained) saved region 3139:6105 - closest read 569688 ( +3098) 41:6237 ( +132) (contained) saved region 3139:6105 - closest read 458937 ( +90) 3049:11633 ( +5528) (contained) saved region 3139:6105 - closest 5' read 458937 ( +90) 3049:11633 ( +5528) saved region 3139:6105 - closest 3' read 569686 ( +3139) 0:6238 ( +133) search for confused edges: discard region 3139:6105 - no confusion in best edges Annotating repeats in reads for tig 41807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41814/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41816/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41832/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41838/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41845/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41869/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41877/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41901/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41914/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41922/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41933/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41966/113047. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 2129:3204 - contained in read 466006 0- 5715 discard region 12669:16521 - contained in read 295314 3985- 16521 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41967/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41999/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42001/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42005/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42043/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42052/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42056/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42057/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42068/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42079/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42081/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42108/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1193:3749 - contained in read 249670 0- 7732 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42115/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42137/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42146/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42163/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42174/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42182/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6842:5251 - contained in read 475483 0- 8892 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42211/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42224/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42230/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42247/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42298/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42308/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42372/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42379/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42380/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42397/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42399/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42451/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6776:9088 - contained in read 381218 3174- 9088 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42453/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42456/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42463/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42478/113047. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 2464:4824 - contained in read 469640 0- 6719 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42542/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42544/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42546/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42547/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42557/113047. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2340:4105 - closest read 490760 ( +2340) 0:4591 ( +486) (contained) saved region 2340:4105 - closest read 609169 ( +0) 2340:8039 ( +3934) (contained) saved region 2340:4105 - closest 5' read 609169 ( +0) 2340:8039 ( +3934) saved region 2340:4105 - closest 3' read 490760 ( +2340) 0:4591 ( +486) search for confused edges: discard region 2340:4105 - no confusion in best edges Annotating repeats in reads for tig 42564/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42568/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42586/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42590/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42608/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42684/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42733/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42734/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42748/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42749/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42773/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42795/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42830/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42836/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2892:1428 - contained in read 501751 0- 2903 discard region 2903:1682 - contained in read 501751 0- 2903 discard region 2903:1731 - contained in read 501751 0- 2903 discard region 2903:1953 - contained in read 501751 0- 2903 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42839/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42862/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42885/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3089:4570 - contained in read 504564 0- 6644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42923/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 42992/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43000/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43028/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43037/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43048/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43076/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43087/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43090/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43135/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2556:866 - contained in read 401200 0- 8319 discard region 2920:3761 - contained in read 401200 0- 8319 discard region 6741:5975 - contained in read 401200 0- 8319 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43155/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43170/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43175/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6308:7338 - closest read 517212 ( +369) 5939:13675 ( +6337) (contained) saved region 6308:7338 - closest read 517214 ( +368) 5940:13662 ( +6324) (contained) saved region 6308:7338 - closest read 517215 ( +367) 5941:13667 ( +6329) (contained) saved region 6308:7338 - closest read 517213 ( +365) 5943:13667 ( +6329) (contained) saved region 6308:7338 - closest read 517217 ( +245) 6063:8246 ( +908) (contained) saved region 6308:7338 - closest read 165721 ( +0) 6308:7940 ( +602) (contained) saved region 6308:7338 - closest 5' read 517212 ( +369) 5939:13675 ( +6337) saved region 6308:7338 - closest 3' read 517212 ( +369) 5939:13675 ( +6337) search for confused edges: discard region 6308:7338 - no confusion in best edges Annotating repeats in reads for tig 43181/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1513:2954 - contained in read 691603 0- 4433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43184/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43233/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43238/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43241/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43265/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43272/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43282/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43328/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43337/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43342/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43348/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43369/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43409/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43464/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43471/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43487/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43492/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43501/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43539/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43555/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43560/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43565/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43628/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43639/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43708/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43711/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43714/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43716/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43752/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43756/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43759/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43760/113047. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4339:6709 - contained in read 583809 3170- 10189 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43775/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43813/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43821/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43836/113047. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 3168:4330 - contained in read 544540 0- 9479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43844/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43898/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43900/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43912/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43920/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43941/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43955/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 43989/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44013/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44017/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44046/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44101/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44141/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44173/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5721:6461 - contained in read 557377 0- 9044 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44175/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44222/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44253/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44264/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44288/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44324/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44366/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44377/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44435/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44444/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44529/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44542/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44625/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44627/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44670/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44671/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44681/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44693/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44701/113047. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4037:4661 - contained in read 580050 196- 7534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44768/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44796/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44800/113047. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 7241:9039 - contained in read 584503 0- 9039 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44802/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44807/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44840/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44885/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44894/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44914/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44942/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 44972/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45016/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45024/113047. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 674:1334 - contained in read 227797 0- 5704 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45029/113047. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4157:5162 - contained in read 595416 0- 8361 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45035/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45040/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45177/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45178/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45304/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45307/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45339/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45400/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45454/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45556/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45557/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45745/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45835/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45841/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45859/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45969/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 45987/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46002/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46025/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46050/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46086/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46218/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46239/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46251/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46256/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46293/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46311/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46327/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46353/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46354/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46357/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46360/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46373/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46519/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46611/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46643/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46654/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46664/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46677/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46691/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46698/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46712/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46721/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46764/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46779/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46781/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46792/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46817/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 46903/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47052/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47060/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47099/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47151/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47269/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47294/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47319/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47340/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47518/113047. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 11848:13488 - contained in read 69191 7561- 13488 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47696/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47861/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47881/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47892/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47986/113047. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 56:1393 - contained in read 29563 0- 5927 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 47997/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 48083/113047. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 48157/113047. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5100:4512 - contained in read 719170 0- 6921 discard region 6405:6921 - contained in read 719170 0- 6921 thickest edges to the repeat regions: search for confused edges: