---------------------------------------- Adding sentinel breaks at the ends of contigs. ---------------------------------------- Adding breaks at confused reads. createUnitigs()-- add break tig 113047 pos 7011 isLow f createUnitigs()-- add break tig 113048 pos 11313 isLow t createUnitigs()-- add break tig 113048 pos 15516 isLow t createUnitigs()-- add break tig 113048 pos 33031 isLow f createUnitigs()-- add break tig 113049 pos 19865 isLow f createUnitigs()-- add break tig 113052 pos 9200 isLow f createUnitigs()-- add break tig 113052 pos 15897 isLow f createUnitigs()-- add break tig 113055 pos 2625 isLow t createUnitigs()-- add break tig 113055 pos 13788 isLow f createUnitigs()-- add break tig 113055 pos 13607 isLow f createUnitigs()-- add break tig 113055 pos 13696 isLow f createUnitigs()-- add break tig 113055 pos 13614 isLow f createUnitigs()-- add break tig 113055 pos 13699 isLow f createUnitigs()-- add break tig 113055 pos 28659 isLow f createUnitigs()-- add break tig 113055 pos 26620 isLow f createUnitigs()-- add break tig 113055 pos 22010 isLow t createUnitigs()-- add break tig 113055 pos 30516 isLow f createUnitigs()-- add break tig 113055 pos 22100 isLow t createUnitigs()-- add break tig 113055 pos 22165 isLow t createUnitigs()-- add break tig 113055 pos 29530 isLow f createUnitigs()-- add break tig 113055 pos 23315 isLow t createUnitigs()-- add break tig 113055 pos 30666 isLow t createUnitigs()-- add break tig 113055 pos 36972 isLow f createUnitigs()-- add break tig 113056 pos 279 isLow t createUnitigs()-- add break tig 113058 pos 0 isLow t createUnitigs()-- add break tig 113061 pos 2059 isLow t createUnitigs()-- add break tig 113061 pos 2155 isLow t createUnitigs()-- add break tig 113061 pos 2173 isLow t createUnitigs()-- add break tig 113061 pos 2184 isLow t createUnitigs()-- add break tig 113061 pos 2199 isLow t createUnitigs()-- add break tig 113062 pos 12 isLow t createUnitigs()-- add break tig 113064 pos 0 isLow t createUnitigs()-- add break tig 113066 pos 696 isLow t createUnitigs()-- add break tig 113066 pos 16235 isLow f createUnitigs()-- add break tig 113066 pos 16220 isLow f createUnitigs()-- add break tig 113066 pos 17094 isLow f createUnitigs()-- add break tig 15 pos 12183 isLow f createUnitigs()-- add break tig 113068 pos 32876 isLow f createUnitigs()-- add break tig 113070 pos 20115 isLow f createUnitigs()-- add break tig 113073 pos 1867 isLow t createUnitigs()-- add break tig 113073 pos 9327 isLow f createUnitigs()-- add break tig 113073 pos 13717 isLow f createUnitigs()-- add break tig 113073 pos 2444 isLow t createUnitigs()-- add break tig 113073 pos 8465 isLow f createUnitigs()-- add break tig 113073 pos 6595 isLow t createUnitigs()-- add break tig 113073 pos 10061 isLow t createUnitigs()-- add break tig 113073 pos 14987 isLow t createUnitigs()-- add break tig 113073 pos 18407 isLow t createUnitigs()-- add break tig 113073 pos 26810 isLow f createUnitigs()-- add break tig 113073 pos 31043 isLow f createUnitigs()-- add break tig 113073 pos 29954 isLow f createUnitigs()-- add break tig 113074 pos 8160 isLow f createUnitigs()-- add break tig 113078 pos 0 isLow t createUnitigs()-- add break tig 113079 pos 23613 isLow f createUnitigs()-- add break tig 113080 pos 9699 isLow f createUnitigs()-- add break tig 113080 pos 954 isLow t createUnitigs()-- add break tig 113080 pos 9726 isLow f createUnitigs()-- add break tig 113080 pos 970 isLow t createUnitigs()-- add break tig 113080 pos 9804 isLow f createUnitigs()-- add break tig 113080 pos 13616 isLow f createUnitigs()-- add break tig 113080 pos 1059 isLow t createUnitigs()-- add break tig 113080 pos 1365 isLow t createUnitigs()-- add break tig 113080 pos 13832 isLow f createUnitigs()-- add break tig 113081 pos 0 isLow t createUnitigs()-- add break tig 113083 pos 0 isLow t createUnitigs()-- add break tig 113084 pos 14933 isLow f createUnitigs()-- add break tig 113085 pos 8700 isLow f createUnitigs()-- add break tig 113085 pos 8420 isLow f createUnitigs()-- add break tig 113085 pos 8977 isLow f createUnitigs()-- add break tig 113085 pos 4031 isLow t createUnitigs()-- add break tig 113085 pos 4128 isLow t createUnitigs()-- add break tig 113085 pos 4326 isLow t createUnitigs()-- add break tig 113085 pos 4355 isLow t createUnitigs()-- add break tig 113085 pos 4430 isLow t createUnitigs()-- add break tig 113085 pos 14034 isLow f createUnitigs()-- add break tig 113088 pos 148 isLow t createUnitigs()-- add break tig 45 pos 9565 isLow f createUnitigs()-- add break tig 45 pos 12191 isLow f createUnitigs()-- add break tig 113089 pos 30 isLow t createUnitigs()-- add break tig 113090 pos 0 isLow t createUnitigs()-- add break tig 113091 pos 9467 isLow f createUnitigs()-- add break tig 113094 pos 52583 isLow f createUnitigs()-- add break tig 113098 pos 17393 isLow f createUnitigs()-- add break tig 113099 pos 1296 isLow t createUnitigs()-- add break tig 113099 pos 13072 isLow f createUnitigs()-- add break tig 113103 pos 0 isLow t createUnitigs()-- add break tig 113104 pos 1902 isLow t createUnitigs()-- add break tig 113106 pos 10296 isLow f createUnitigs()-- add break tig 113107 pos 0 isLow t createUnitigs()-- add break tig 113108 pos 13384 isLow f createUnitigs()-- add break tig 113109 pos 10653 isLow f createUnitigs()-- add break tig 113109 pos 3380 isLow t createUnitigs()-- add break tig 113109 pos 4734 isLow t createUnitigs()-- add break tig 113113 pos 1306 isLow t createUnitigs()-- add break tig 113114 pos 8206 isLow f createUnitigs()-- add break tig 113115 pos 0 isLow t createUnitigs()-- add break tig 113116 pos 170 isLow t createUnitigs()-- add break tig 113116 pos 16710 isLow f createUnitigs()-- add break tig 113118 pos 9108 isLow f createUnitigs()-- add break tig 113119 pos 7887 isLow f createUnitigs()-- add break tig 113119 pos 10833 isLow f createUnitigs()-- add break tig 113119 pos 5676 isLow t createUnitigs()-- add break tig 113119 pos 10833 isLow f createUnitigs()-- add break tig 113119 pos 5676 isLow t createUnitigs()-- add break tig 113119 pos 10833 isLow f createUnitigs()-- add break tig 113120 pos 0 isLow t createUnitigs()-- add break tig 113122 pos 0 isLow t createUnitigs()-- add break tig 113124 pos 33919 isLow f createUnitigs()-- add break tig 113129 pos 8 isLow t createUnitigs()-- add break tig 584106 pos 11017 isLow f createUnitigs()-- add break tig 113133 pos 6504 isLow f createUnitigs()-- add break tig 113134 pos 8806 isLow f createUnitigs()-- add break tig 113138 pos 940 isLow t createUnitigs()-- add break tig 113138 pos 2124 isLow t createUnitigs()-- add break tig 123 pos 890 isLow t createUnitigs()-- add break tig 113141 pos 0 isLow t createUnitigs()-- add break tig 113143 pos 23948 isLow f createUnitigs()-- add break tig 113144 pos 9313 isLow f createUnitigs()-- add break tig 113144 pos 2572 isLow t createUnitigs()-- add break tig 113144 pos 11219 isLow f createUnitigs()-- add break tig 113144 pos 2950 isLow t createUnitigs()-- add break tig 113148 pos 0 isLow t createUnitigs()-- add break tig 113150 pos 12971 isLow f createUnitigs()-- add break tig 113153 pos 778 isLow t createUnitigs()-- add break tig 113155 pos 0 isLow t createUnitigs()-- add break tig 113157 pos 2240 isLow t createUnitigs()-- add break tig 113158 pos 8759 isLow f createUnitigs()-- add break tig 113159 pos 2841 isLow t createUnitigs()-- add break tig 113159 pos 6671 isLow t createUnitigs()-- add break tig 113159 pos 16223 isLow f createUnitigs()-- add break tig 113161 pos 8076 isLow f createUnitigs()-- add break tig 113164 pos 0 isLow t createUnitigs()-- add break tig 113166 pos 8861 isLow f createUnitigs()-- add break tig 113167 pos 0 isLow t createUnitigs()-- add break tig 113168 pos 17081 isLow f createUnitigs()-- add break tig 113169 pos 119 isLow t createUnitigs()-- add break tig 113169 pos 4594 isLow f createUnitigs()-- add break tig 113170 pos 20020 isLow f createUnitigs()-- add break tig 113174 pos 2232 isLow t createUnitigs()-- add break tig 113175 pos 3 isLow t createUnitigs()-- add break tig 113175 pos 16174 isLow f createUnitigs()-- add break tig 113178 pos 12140 isLow f createUnitigs()-- add break tig 113178 pos 13227 isLow f createUnitigs()-- add break tig 113178 pos 8665 isLow t createUnitigs()-- add break tig 113178 pos 18350 isLow f createUnitigs()-- add break tig 113180 pos 35991 isLow f createUnitigs()-- add break tig 113181 pos 10523 isLow f createUnitigs()-- add break tig 113181 pos 4193 isLow t createUnitigs()-- add break tig 113181 pos 10985 isLow f createUnitigs()-- add break tig 113181 pos 4193 isLow t createUnitigs()-- add break tig 113181 pos 10985 isLow f createUnitigs()-- add break tig 113181 pos 4193 isLow t createUnitigs()-- add break tig 584111 pos 1 isLow t createUnitigs()-- add break tig 113185 pos 0 isLow t createUnitigs()-- add break tig 113186 pos 20326 isLow f createUnitigs()-- add break tig 113187 pos 4021 isLow t createUnitigs()-- add break tig 113187 pos 7172 isLow t createUnitigs()-- add break tig 113188 pos 0 isLow t createUnitigs()-- add break tig 114118 pos 9 isLow t createUnitigs()-- add break tig 113191 pos 0 isLow t createUnitigs()-- add break tig 113193 pos 0 isLow t createUnitigs()-- add break tig 113194 pos 7241 isLow f createUnitigs()-- add break tig 113194 pos 8117 isLow f createUnitigs()-- add break tig 113195 pos 25836 isLow f createUnitigs()-- add break tig 113196 pos 12126 isLow f createUnitigs()-- add break tig 113198 pos 11248 isLow f createUnitigs()-- add break tig 113201 pos 9654 isLow f createUnitigs()-- add break tig 113201 pos 2498 isLow t createUnitigs()-- add break tig 113204 pos 5414 isLow f createUnitigs()-- add break tig 113206 pos 24720 isLow f createUnitigs()-- add break tig 113207 pos 7 isLow t createUnitigs()-- add break tig 113209 pos 0 isLow t createUnitigs()-- add break tig 113211 pos 82 isLow t createUnitigs()-- add break tig 328 pos 16176 isLow f createUnitigs()-- add break tig 113213 pos 16880 isLow f createUnitigs()-- add break tig 113214 pos 1137 isLow t createUnitigs()-- add break tig 113215 pos 16263 isLow f createUnitigs()-- add break tig 113218 pos 9844 isLow f createUnitigs()-- add break tig 113218 pos 2163 isLow t createUnitigs()-- add break tig 113219 pos 0 isLow t createUnitigs()-- add break tig 113220 pos 16791 isLow f createUnitigs()-- add break tig 113221 pos 6855 isLow f createUnitigs()-- add break tig 113224 pos 10450 isLow f createUnitigs()-- add break tig 113224 pos 5201 isLow t createUnitigs()-- add break tig 113224 pos 7145 isLow t createUnitigs()-- add break tig 113225 pos 78 isLow t createUnitigs()-- add break tig 113227 pos 2514 isLow t createUnitigs()-- add break tig 113227 pos 15684 isLow f createUnitigs()-- add break tig 113229 pos 4970 isLow t createUnitigs()-- add break tig 113229 pos 13226 isLow f createUnitigs()-- add break tig 113229 pos 7827 isLow t createUnitigs()-- add break tig 113229 pos 13069 isLow t createUnitigs()-- add break tig 113233 pos 467 isLow t createUnitigs()-- add break tig 113234 pos 8907 isLow f createUnitigs()-- add break tig 113234 pos 816 isLow t createUnitigs()-- add break tig 113234 pos 8907 isLow f createUnitigs()-- add break tig 113234 pos 816 isLow t createUnitigs()-- add break tig 584116 pos 8620 isLow f createUnitigs()-- add break tig 113240 pos 23 isLow t createUnitigs()-- add break tig 584117 pos 0 isLow t createUnitigs()-- add break tig 113244 pos 0 isLow t createUnitigs()-- add break tig 113246 pos 0 isLow t createUnitigs()-- add break tig 113248 pos 17 isLow t createUnitigs()-- add break tig 113248 pos 8183 isLow f createUnitigs()-- add break tig 113248 pos 8197 isLow f createUnitigs()-- add break tig 113248 pos 8199 isLow f createUnitigs()-- add break tig 113251 pos 0 isLow t createUnitigs()-- add break tig 113253 pos 8 isLow t createUnitigs()-- add break tig 113256 pos 0 isLow t createUnitigs()-- add break tig 113256 pos 14110 isLow f createUnitigs()-- add break tig 113260 pos 6611 isLow f createUnitigs()-- add break tig 113260 pos 3072 isLow t createUnitigs()-- add break tig 113264 pos 1 isLow t createUnitigs()-- add break tig 113266 pos 2418 isLow t createUnitigs()-- add break tig 113268 pos 48 isLow t createUnitigs()-- add break tig 113269 pos 10627 isLow f createUnitigs()-- add break tig 113270 pos 856 isLow t createUnitigs()-- add break tig 113271 pos 23 isLow t createUnitigs()-- add break tig 113272 pos 0 isLow t createUnitigs()-- add break tig 113273 pos 16621 isLow f createUnitigs()-- add break tig 113277 pos 0 isLow t createUnitigs()-- add break tig 113278 pos 17636 isLow f createUnitigs()-- add break tig 113280 pos 9631 isLow f createUnitigs()-- add break tig 113283 pos 14074 isLow f createUnitigs()-- add break tig 113287 pos 6444 isLow f createUnitigs()-- add break tig 113289 pos 10624 isLow f createUnitigs()-- add break tig 113291 pos 26010 isLow f createUnitigs()-- add break tig 113295 pos 2844 isLow f createUnitigs()-- add break tig 113295 pos 238 isLow t createUnitigs()-- add break tig 113297 pos 6269 isLow f createUnitigs()-- add break tig 113300 pos 10888 isLow f createUnitigs()-- add break tig 113303 pos 22996 isLow f createUnitigs()-- add break tig 113306 pos 16950 isLow f createUnitigs()-- add break tig 113308 pos 7 isLow t createUnitigs()-- add break tig 113309 pos 21931 isLow f createUnitigs()-- add break tig 113313 pos 8198 isLow f createUnitigs()-- add break tig 113313 pos 67 isLow t createUnitigs()-- add break tig 113317 pos 549 isLow t createUnitigs()-- add break tig 113318 pos 19658 isLow f createUnitigs()-- add break tig 113319 pos 14458 isLow t createUnitigs()-- add break tig 113321 pos 0 isLow t createUnitigs()-- add break tig 113322 pos 6836 isLow f createUnitigs()-- add break tig 113323 pos 6496 isLow t createUnitigs()-- add break tig 113323 pos 8532 isLow t createUnitigs()-- add break tig 113323 pos 19733 isLow f createUnitigs()-- add break tig 113325 pos 5592 isLow f createUnitigs()-- add break tig 113328 pos 19517 isLow f createUnitigs()-- add break tig 113331 pos 5632 isLow f createUnitigs()-- add break tig 113331 pos 22 isLow t createUnitigs()-- add break tig 113331 pos 5868 isLow f createUnitigs()-- add break tig 113331 pos 22 isLow t createUnitigs()-- add break tig 113332 pos 0 isLow t createUnitigs()-- add break tig 113335 pos 0 isLow t createUnitigs()-- add break tig 113337 pos 36 isLow t createUnitigs()-- add break tig 113340 pos 10634 isLow f createUnitigs()-- add break tig 113341 pos 23921 isLow f createUnitigs()-- add break tig 113342 pos 0 isLow t createUnitigs()-- add break tig 113344 pos 16357 isLow f createUnitigs()-- add break tig 584119 pos 0 isLow t createUnitigs()-- add break tig 113350 pos 19807 isLow f createUnitigs()-- add break tig 113353 pos 14122 isLow f createUnitigs()-- add break tig 113354 pos 19 isLow t createUnitigs()-- add break tig 911 pos 9948 isLow f createUnitigs()-- add break tig 911 pos 3157 isLow t createUnitigs()-- add break tig 911 pos 9948 isLow f createUnitigs()-- add break tig 113356 pos 23606 isLow f createUnitigs()-- add break tig 113359 pos 135 isLow t createUnitigs()-- add break tig 113360 pos 799 isLow t createUnitigs()-- add break tig 113363 pos 988 isLow t createUnitigs()-- add break tig 113366 pos 0 isLow t createUnitigs()-- add break tig 113367 pos 13218 isLow f createUnitigs()-- add break tig 113368 pos 3 isLow t createUnitigs()-- add break tig 113370 pos 8 isLow t createUnitigs()-- add break tig 113372 pos 47 isLow t createUnitigs()-- add break tig 113376 pos 0 isLow t createUnitigs()-- add break tig 113379 pos 0 isLow t createUnitigs()-- add break tig 113379 pos 4936 isLow f createUnitigs()-- add break tig 113380 pos 1746 isLow t createUnitigs()-- add break tig 113380 pos 7449 isLow f createUnitigs()-- add break tig 113380 pos 1812 isLow t createUnitigs()-- add break tig 584122 pos 0 isLow t createUnitigs()-- add break tig 113384 pos 31614 isLow f createUnitigs()-- add break tig 584124 pos 22137 isLow f createUnitigs()-- add break tig 113388 pos 0 isLow t createUnitigs()-- add break tig 113389 pos 4530 isLow f createUnitigs()-- add break tig 113391 pos 16287 isLow f createUnitigs()-- add break tig 113395 pos 657 isLow t createUnitigs()-- add break tig 113399 pos 3 isLow t createUnitigs()-- add break tig 113399 pos 27 isLow t createUnitigs()-- add break tig 113399 pos 44 isLow t createUnitigs()-- add break tig 113402 pos 0 isLow t createUnitigs()-- add break tig 113402 pos 17383 isLow f createUnitigs()-- add break tig 113405 pos 1776 isLow t createUnitigs()-- add break tig 113405 pos 3719 isLow t createUnitigs()-- add break tig 113406 pos 0 isLow t createUnitigs()-- add break tig 113408 pos 3939 isLow t createUnitigs()-- add break tig 113410 pos 10039 isLow f createUnitigs()-- add break tig 113413 pos 20548 isLow f createUnitigs()-- add break tig 113416 pos 8236 isLow f createUnitigs()-- add break tig 113417 pos 5463 isLow f createUnitigs()-- add break tig 113417 pos 7681 isLow f createUnitigs()-- add break tig 113421 pos 0 isLow t 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createUnitigs()-- add break tig 113710 pos 11676 isLow f createUnitigs()-- add break tig 113711 pos 24 isLow t createUnitigs()-- add break tig 113713 pos 11517 isLow f createUnitigs()-- add break tig 113715 pos 0 isLow t createUnitigs()-- add break tig 584151 pos 0 isLow t createUnitigs()-- add break tig 113719 pos 17748 isLow f createUnitigs()-- add break tig 113721 pos 0 isLow t createUnitigs()-- add break tig 113722 pos 5557 isLow f createUnitigs()-- add break tig 113726 pos 4 isLow t createUnitigs()-- add break tig 113727 pos 10824 isLow f createUnitigs()-- add break tig 113730 pos 12642 isLow f createUnitigs()-- add break tig 113733 pos 7023 isLow f createUnitigs()-- add break tig 113736 pos 5 isLow t createUnitigs()-- add break tig 582305 pos 0 isLow t createUnitigs()-- add break tig 113737 pos 14490 isLow f createUnitigs()-- add break tig 113740 pos 16755 isLow f createUnitigs()-- add break tig 4499 pos 17529 isLow f createUnitigs()-- add break tig 584154 pos 7515 isLow f createUnitigs()-- add break tig 113744 pos 0 isLow t createUnitigs()-- add break tig 113748 pos 1408 isLow t createUnitigs()-- add break tig 113751 pos 14 isLow t createUnitigs()-- add break tig 113752 pos 12673 isLow f createUnitigs()-- add break tig 113757 pos 0 isLow t createUnitigs()-- add break tig 113758 pos 0 isLow t createUnitigs()-- add break tig 113760 pos 9 isLow t createUnitigs()-- add break tig 113763 pos 29 isLow t createUnitigs()-- add break tig 113767 pos 0 isLow t createUnitigs()-- add break tig 4890 pos 7738 isLow f createUnitigs()-- add break tig 4890 pos 7808 isLow f createUnitigs()-- add break tig 113768 pos 18254 isLow f createUnitigs()-- add break tig 113773 pos 0 isLow t createUnitigs()-- add break tig 113774 pos 22391 isLow f createUnitigs()-- add break tig 113779 pos 4 isLow t createUnitigs()-- add break tig 113780 pos 8336 isLow f createUnitigs()-- add break tig 113784 pos 0 isLow t createUnitigs()-- add break tig 113787 pos 0 isLow t createUnitigs()-- add break tig 113789 pos 1034 isLow t createUnitigs()-- add break tig 113792 pos 1 isLow t createUnitigs()-- add break tig 113793 pos 11278 isLow f createUnitigs()-- add break tig 113796 pos 11251 isLow f createUnitigs()-- add break tig 113799 pos 5644 isLow f createUnitigs()-- add break tig 113801 pos 0 isLow t createUnitigs()-- add break tig 113804 pos 0 isLow t createUnitigs()-- add break tig 113806 pos 0 isLow t createUnitigs()-- add break tig 113807 pos 14778 isLow f createUnitigs()-- add break tig 113810 pos 10731 isLow f createUnitigs()-- add break tig 113813 pos 16521 isLow f createUnitigs()-- add break tig 113818 pos 0 isLow t createUnitigs()-- add break tig 113819 pos 19922 isLow f createUnitigs()-- add break tig 113823 pos 1497 isLow t createUnitigs()-- add break tig 113823 pos 4315 isLow t createUnitigs()-- add break tig 113825 pos 0 isLow t createUnitigs()-- add break tig 113826 pos 2773 isLow t createUnitigs()-- add break tig 113827 pos 0 isLow t createUnitigs()-- add break tig 113828 pos 24805 isLow f createUnitigs()-- add break tig 113829 pos 0 isLow t createUnitigs()-- add break tig 113832 pos 24 isLow t createUnitigs()-- add break tig 113834 pos 7 isLow t createUnitigs()-- add break tig 113837 pos 0 isLow t createUnitigs()-- add break tig 113839 pos 69 isLow t createUnitigs()-- add break tig 113839 pos 7712 isLow t createUnitigs()-- add break tig 113839 pos 12331 isLow t createUnitigs()-- add break tig 113841 pos 16015 isLow f createUnitigs()-- add break tig 113845 pos 0 isLow t createUnitigs()-- add break tig 113847 pos 2644 isLow t createUnitigs()-- add break tig 113849 pos 3268 isLow t createUnitigs()-- add break tig 113851 pos 9061 isLow f createUnitigs()-- add break tig 113854 pos 9714 isLow f createUnitigs()-- add break tig 113857 pos 13789 isLow f createUnitigs()-- add break tig 113860 pos 7584 isLow f createUnitigs()-- add break tig 113865 pos 0 isLow t createUnitigs()-- add break tig 113868 pos 0 isLow t createUnitigs()-- add break tig 113869 pos 5829 isLow f createUnitigs()-- add break tig 113872 pos 7455 isLow f createUnitigs()-- add break tig 113877 pos 0 isLow t createUnitigs()-- add break tig 113879 pos 1693 isLow t createUnitigs()-- add break tig 113881 pos 9584 isLow f createUnitigs()-- add break tig 113884 pos 11987 isLow f createUnitigs()-- add break tig 113886 pos 2 isLow t createUnitigs()-- add break tig 113887 pos 6929 isLow f createUnitigs()-- add break tig 113890 pos 9883 isLow f createUnitigs()-- add break tig 113893 pos 11956 isLow f createUnitigs()-- add break tig 113895 pos 11743 isLow f createUnitigs()-- add break tig 584164 pos 10132 isLow f createUnitigs()-- add break tig 113901 pos 5586 isLow f createUnitigs()-- add break tig 113904 pos 9719 isLow f createUnitigs()-- add break tig 113909 pos 54 isLow t createUnitigs()-- add break tig 113910 pos 9437 isLow f createUnitigs()-- add break tig 113913 pos 13610 isLow f createUnitigs()-- add break tig 113916 pos 16368 isLow f createUnitigs()-- add break tig 113920 pos 8371 isLow f createUnitigs()-- add break tig 113921 pos 10127 isLow f createUnitigs()-- add break tig 113925 pos 1 isLow t createUnitigs()-- add break tig 113926 pos 14125 isLow f createUnitigs()-- add break tig 113928 pos 0 isLow t createUnitigs()-- add break tig 113929 pos 7369 isLow f createUnitigs()-- add break tig 113932 pos 15875 isLow f createUnitigs()-- add break tig 113936 pos 0 isLow t createUnitigs()-- add break tig 113938 pos 8948 isLow f createUnitigs()-- add break tig 113943 pos 129 isLow t createUnitigs()-- add break tig 113946 pos 3 isLow t createUnitigs()-- add break tig 113948 pos 0 isLow t createUnitigs()-- add break tig 113949 pos 11684 isLow f createUnitigs()-- add break tig 584168 pos 9344 isLow f createUnitigs()-- add break tig 113954 pos 7959 isLow f createUnitigs()-- add break tig 113956 pos 12218 isLow f createUnitigs()-- add break tig 113959 pos 6268 isLow f createUnitigs()-- add break tig 113961 pos 10444 isLow f createUnitigs()-- add break tig 113963 pos 4922 isLow f createUnitigs()-- add break tig 113963 pos 4703 isLow f createUnitigs()-- add break tig 113963 pos 86 isLow t createUnitigs()-- add break tig 113966 pos 0 isLow t createUnitigs()-- add break tig 113967 pos 8015 isLow f createUnitigs()-- add break tig 113969 pos 0 isLow t createUnitigs()-- add break tig 113970 pos 1888 isLow f createUnitigs()-- add break tig 113972 pos 6902 isLow f createUnitigs()-- add break tig 113976 pos 0 isLow t createUnitigs()-- add break tig 113977 pos 8481 isLow f createUnitigs()-- add break tig 113980 pos 18883 isLow f createUnitigs()-- add break tig 113983 pos 9157 isLow f createUnitigs()-- add break tig 113988 pos 0 isLow t createUnitigs()-- add break tig 113989 pos 11023 isLow f createUnitigs()-- add break tig 113992 pos 0 isLow t createUnitigs()-- add break tig 113993 pos 10798 isLow f createUnitigs()-- add break tig 113998 pos 0 isLow t createUnitigs()-- add break tig 113999 pos 12878 isLow f createUnitigs()-- add break tig 114004 pos 6 isLow t createUnitigs()-- add break tig 114006 pos 7 isLow t createUnitigs()-- add break tig 114010 pos 1 isLow t createUnitigs()-- add break tig 114011 pos 5892 isLow f createUnitigs()-- add break tig 114013 pos 10055 isLow f createUnitigs()-- add break tig 114016 pos 7413 isLow f createUnitigs()-- add break tig 114019 pos 0 isLow t createUnitigs()-- add break tig 114020 pos 1780 isLow f createUnitigs()-- add break tig 114023 pos 6771 isLow f createUnitigs()-- add break tig 114025 pos 7569 isLow f createUnitigs()-- add break tig 114029 pos 0 isLow t createUnitigs()-- add break tig 114030 pos 9200 isLow f createUnitigs()-- add break tig 114032 pos 0 isLow t createUnitigs()-- add break tig 114035 pos 0 isLow t createUnitigs()-- add break tig 114036 pos 6532 isLow f createUnitigs()-- add break tig 114038 pos 5953 isLow f createUnitigs()-- add break tig 114041 pos 6127 isLow f createUnitigs()-- add break tig 114043 pos 10938 isLow f createUnitigs()-- add break tig 114045 pos 6460 isLow f createUnitigs()-- add break tig 114047 pos 9420 isLow f createUnitigs()-- add break tig 114051 pos 12 isLow t createUnitigs()-- add break tig 114054 pos 0 isLow t createUnitigs()-- add break tig 114057 pos 0 isLow t createUnitigs()-- add break tig 114058 pos 9960 isLow f createUnitigs()-- add break tig 114061 pos 6966 isLow f createUnitigs()-- add break tig 114063 pos 10223 isLow f createUnitigs()-- add break tig 114066 pos 6306 isLow f createUnitigs()-- add break tig 114071 pos 0 isLow t createUnitigs()-- add break tig 114072 pos 5687 isLow f createUnitigs()-- add break tig 114077 pos 0 isLow t createUnitigs()-- add break tig 114078 pos 8154 isLow f createUnitigs()-- add break tig 114080 pos 9396 isLow f createUnitigs()-- add break tig 114083 pos 1095 isLow t createUnitigs()-- add break tig 114085 pos 8421 isLow f createUnitigs()-- add break tig 114089 pos 6 isLow t createUnitigs()-- add break tig 114091 pos 16 isLow t createUnitigs()-- add break tig 114092 pos 6439 isLow f createUnitigs()-- add break tig 114095 pos 11998 isLow f createUnitigs()-- add break tig 114097 pos 6714 isLow f createUnitigs()-- add break tig 114101 pos 0 isLow t ---------------------------------------- Finding contig-end to contig-middle intersections. createUnitigs()-- tig 5 len 58568 first read 512517 with 2 placements - last read 55688 with 2 placements createUnitigs()-- read 512517 place 0 edgeTo tig 5 reads # 1 474678- 94175 verified 13049- 123 position 13060- 6 covered 0- 12952 SELF EXPECTED_3' Scan reads from #131 to #153 for high coordinate in verified region 48988-58568 Test read # 131 ident 450892 43320- 52985 against verified region 48988- 58568 - CANDIDATE hangs 9059 5637 - SAVED Test read # 132 ident 506252 43666- 49684 against verified region 48988- 58568 - CANDIDATE hangs 12371 5315 Test read # 133 ident 449354 43932- 50055 against verified region 48988- 58568 - CANDIDATE hangs 12006 5062 Test read # 134 ident 506253 44262- 49697 against verified region 48988- 58568 - CANDIDATE hangs 12354 4724 Test read # 135 ident 556493 46085- 52471 against verified region 48988- 58568 - CANDIDATE hangs 9585 2900 Test read # 136 ident 401021 46225- 58027 against verified region 48988- 58568 - CANDIDATE hangs 3990 2767 - SAVED Test read # 138 ident 535013 46446- 54776 against verified region 48988- 58568 - CANDIDATE hangs 7271 2544 Test read # 139 ident 556492 46551- 52473 against verified region 48988- 58568 - CANDIDATE hangs 9579 2445 Test read # 140 ident 519842 46653- 50448 against verified region 48988- 58568 - CANDIDATE hangs 11605 2337 Test read # 141 ident 519843 46656- 50425 against verified region 48988- 58568 - CANDIDATE hangs 11626 2332 Test read # 142 ident 474677 47120- 53009 against verified region 48988- 58568 - CANDIDATE hangs 9044 1868 Test read # 143 ident 704952 47442- 54400 against verified region 48988- 58568 - CANDIDATE hangs 7646 1545 Test read # 144 ident 704955 47450- 54407 against verified region 48988- 58568 - CANDIDATE hangs 7640 1538 Test read # 145 ident 704954 47456- 54413 against verified region 48988- 58568 - CANDIDATE hangs 7636 1534 Test read # 146 ident 704953 47480- 54407 against verified region 48988- 58568 - CANDIDATE hangs 7641 1507 Test read # 147 ident 44044 47934- 53051 against verified region 48988- 58568 - CANDIDATE hangs 9011 1058 Test read # 148 ident 721233 48713- 55451 against verified region 48988- 58568 - CANDIDATE hangs 6580 279 Test read # 149 ident 139143 48899- 52930 against verified region 48988- 58568 - CANDIDATE hangs 9124 95 Test read # 150 ident 55688 48935- 58568 against verified region 48988- 58568 Test read # 151 ident 87000 49127- 56544 against verified region 48988- 58568 - CANDIDATE hangs 5499 -136 Test read # 152 ident 87003 49128- 56520 against verified region 48988- 58568 - CANDIDATE hangs 5519 -138 Test read # 153 ident 87004 49134- 56542 against verified region 48988- 58568 - CANDIDATE hangs 5507 -144 Found appropriate intersecting read. createUnitigs()-- read 512517 place 1 edgeTo tig 5 reads # 131 450892- 87004 verified 58568- 48988 position 62048- 48988 covered 3484- 13058 BREAK at pos 58027 read 401021 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #0 to #33 for low coordinate in verified region 0-9580 Test read # 0 ident 512517 0- 13080 against verified region 0- 9580 Test read # 1 ident 474678 123- 4020 against verified region 0- 9580 - CANDIDATE hangs 166 -5561 Test read # 2 ident 87002 145- 7561 against verified region 0- 9580 - CANDIDATE hangs 196 -2015 Test read # 3 ident 86999 228- 3584 against verified region 0- 9580 - CANDIDATE hangs 267 -5996 Test read # 4 ident 385534 633- 7352 against verified region 0- 9580 - CANDIDATE hangs 688 -2227 Test read # 5 ident 56242 877- 5709 against verified region 0- 9580 - CANDIDATE hangs 932 -3869 Test read # 6 ident 56247 879- 6669 against verified region 0- 9580 - CANDIDATE hangs 930 -2905 Test read # 7 ident 56244 882- 6180 against verified region 0- 9580 - CANDIDATE hangs 936 -3397 Test read # 8 ident 56246 883- 6861 against verified region 0- 9580 - CANDIDATE hangs 927 -2700 Test read # 9 ident 56245 884- 6535 against verified region 0- 9580 - CANDIDATE hangs 933 -3034 Test read # 10 ident 422001 1220- 5244 against verified region 0- 9580 - CANDIDATE hangs 1273 -4334 Test read # 11 ident 151621 1424- 10943 against verified region 0- 9580 - CANDIDATE hangs 1481 1365 - SAVED Test read # 12 ident 401020 1599- 9076 against verified region 0- 9580 - CANDIDATE hangs 1654 -496 Test read # 13 ident 535014 2275- 5801 against verified region 0- 9580 - CANDIDATE hangs 2322 -3774 Test read # 14 ident 689751 2365- 4802 against verified region 0- 9580 - CANDIDATE hangs 2428 -4778 Test read # 15 ident 164198 2826- 9802 against verified region 0- 9580 - CANDIDATE hangs 2877 224 Test read # 16 ident 164200 2829- 9799 against verified region 0- 9580 - CANDIDATE hangs 2879 219 Test read # 17 ident 164197 2843- 9793 against verified region 0- 9580 - CANDIDATE hangs 2892 224 Test read # 18 ident 164199 2858- 9802 against verified region 0- 9580 - CANDIDATE hangs 2908 225 Test read # 19 ident 168176 3235- 8714 against verified region 0- 9580 - CANDIDATE hangs 3286 -855 Test read # 20 ident 568594 4123- 10970 against verified region 0- 9580 - CANDIDATE hangs 4176 1386 Test read # 21 ident 568596 4126- 10907 against verified region 0- 9580 - CANDIDATE hangs 4180 1322 Test read # 22 ident 568592 4127- 10973 against verified region 0- 9580 - CANDIDATE hangs 4182 1387 Test read # 23 ident 568595 4128- 10969 against verified region 0- 9580 - CANDIDATE hangs 4182 1381 Test read # 24 ident 568593 4130- 10972 against verified region 0- 9580 - CANDIDATE hangs 4186 1384 Test read # 25 ident 568591 4134- 10972 against verified region 0- 9580 - CANDIDATE hangs 4188 1389 Test read # 26 ident 55537 4691- 10434 against verified region 0- 9580 - CANDIDATE hangs 4747 847 Test read # 27 ident 55538 4691- 10428 against verified region 0- 9580 - CANDIDATE hangs 4747 840 Test read # 28 ident 55535 4692- 10427 against verified region 0- 9580 - CANDIDATE hangs 4746 847 Test read # 29 ident 55534 4693- 10412 against verified region 0- 9580 - CANDIDATE hangs 4747 831 Test read # 30 ident 55536 4761- 10425 against verified region 0- 9580 - CANDIDATE hangs 4814 842 Test read # 31 ident 202040 6550- 13079 against verified region 0- 9580 - CANDIDATE hangs 6612 3486 Test read # 32 ident 540596 7339- 14626 against verified region 0- 9580 - CANDIDATE hangs 7396 5032 Test read # 33 ident 94175 8105- 13012 against verified region 0- 9580 - CANDIDATE hangs 8162 3428 Found appropriate intersecting read. createUnitigs()-- read 55688 place 0 edgeTo tig 5 reads # 0 512517- 94175 verified 0- 9580 position -52- 9580 covered 58- 9631 BREAK at pos 1424 read 151621 isLow 1 sim 0.9849 createUnitigs()-- read 55688 place 1 edgeTo tig 5 reads # 131 450892- 87004 verified 48932- 58027 position 48932- 58563 covered 0- 9125 SELF EXPECTED_3' createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 8 len 47295 first read 125296 with 1 placements - last read 13689 with 1 placements createUnitigs()-- read 125296 place 0 edgeTo tig 8 reads # 1 17738- 503372 verified 7345- 11 position 7345- 5 covered 0- 7325 SELF createUnitigs()-- read 13689 place 0 edgeTo tig 8 reads # 112 325308- 288348 verified 39146- 46507 position 39146- 47285 covered 0- 7333 SELF EXPECTED_3' createUnitigs()-- tig 11 len 43639 first read 248181 with 2 placements - last read 372325 with 1 placements createUnitigs()-- read 248181 place 0 edgeTo tig 11 reads # 3 295630- 409664 verified 8211- 4302 position 8211- -676 covered 0- 3848 SELF EXPECTED_3' createUnitigs()-- read 248181 place 1 edgeTo tig 11 reads # 1 248178- 450928 verified 9565- 702 position 9576- 702 covered 25- 8859 SELF createUnitigs()-- read 372325 place 0 edgeTo tig 11 reads # 97 425164- 4419 verified 37660- 43631 position 37660- 43642 covered 0- 5909 SELF EXPECTED_3' createUnitigs()-- tig 12 len 9542 first read 701871 with 1 placements - last read 514283 with 4 placements createUnitigs()-- read 701871 place 0 edgeTo tig 12 reads # 1 701875- 27101 verified 4- 5645 position -6- 5645 covered 0- 5601 SELF createUnitigs()-- read 514283 place 0 edgeTo tig 12 reads # 0 701871- 27101 verified 3085- 9536 position 3085- 9536 covered 0- 6450 SELF Scan reads from #30 to #37 for low coordinate in verified region 22248-23841 Test read # 30 ident 649997 22248- 28446 against verified region 22248- 23841 Test read # 31 ident 649998 22248- 28437 against verified region 22248- 23841 Test read # 32 ident 650003 22251- 28431 against verified region 22248- 23841 - CANDIDATE hangs 4874 4589 - SAVED Test read # 33 ident 649999 22252- 28448 against verified region 22248- 23841 - CANDIDATE hangs 4881 4609 Test read # 34 ident 650000 22252- 28422 against verified region 22248- 23841 - CANDIDATE hangs 4879 4578 Test read # 35 ident 650002 22253- 28447 against verified region 22248- 23841 - CANDIDATE hangs 4882 4605 Test read # 36 ident 650001 22255- 28440 against verified region 22248- 23841 - CANDIDATE hangs 4881 4603 Test read # 37 ident 650004 22261- 28442 against verified region 22248- 23841 - CANDIDATE hangs 4883 4597 Found appropriate intersecting read. createUnitigs()-- read 514283 place 1 edgeTo tig 127 reads # 30 649997- 650004 verified 22248- 23841 position 17374- 23841 covered 4872- 6450 BREAK at pos 22251 read 650003 isLow 1 sim 1.0000 Scan reads from #7 to #28 for low coordinate in verified region 3786-6853 Test read # 7 ident 186712 3786- 9897 against verified region 3786- 6853 Test read # 8 ident 594005 3792- 10189 against verified region 3786- 6853 - CANDIDATE hangs 3489 3347 - SAVED Test read # 10 ident 685671 3906- 7908 against verified region 3786- 6853 - CANDIDATE hangs 3564 1078 Test read # 11 ident 670234 3949- 10634 against verified region 3786- 6853 - CANDIDATE hangs 3570 3701 Test read # 12 ident 670233 3970- 10400 against verified region 3786- 6853 - CANDIDATE hangs 3589 3464 Test read # 13 ident 601816 3999- 9657 against verified region 3786- 6853 - CANDIDATE hangs 3670 2845 Test read # 14 ident 428686 4045- 7386 against verified region 3786- 6853 - CANDIDATE hangs 3696 537 Test read # 15 ident 665461 4065- 7562 against verified region 3786- 6853 - CANDIDATE hangs 3719 708 Test read # 16 ident 575325 4086- 5824 against verified region 3786- 6853 - CANDIDATE hangs 3740 -1013 Test read # 17 ident 356284 4103- 7943 against verified region 3786- 6853 - CANDIDATE hangs 3752 1108 Test read # 18 ident 201244 4117- 7355 against verified region 3786- 6853 - CANDIDATE hangs 3780 510 Test read # 19 ident 141778 4152- 6205 against verified region 3786- 6853 - CANDIDATE hangs 3798 -635 Test read # 21 ident 382027 4178- 7297 against verified region 3786- 6853 - CANDIDATE hangs 3825 452 Test read # 22 ident 683629 4217- 6272 against verified region 3786- 6853 - CANDIDATE hangs 3865 -572 Test read # 23 ident 243402 4218- 10402 against verified region 3786- 6853 - CANDIDATE hangs 3840 3466 Test read # 25 ident 382028 4261- 7144 against verified region 3786- 6853 - CANDIDATE hangs 3910 304 Test read # 26 ident 562968 4326- 10875 against verified region 3786- 6853 - CANDIDATE hangs 3989 4065 Test read # 28 ident 331347 4396- 6255 against verified region 3786- 6853 - CANDIDATE hangs 4044 -594 Found appropriate intersecting read. createUnitigs()-- read 514283 place 2 edgeTo tig 1390 reads # 7 186712- 331347 verified 3786- 6853 position 346- 6853 covered 3480- 6450 BREAK at pos 3792 read 594005 isLow 1 sim 1.0000 Scan reads from #22 to #79 for high coordinate in verified region 10038-13220 Test read # 22 ident 211449 3220- 11515 against verified region 10038- 13220 - CANDIDATE hangs 4969 6714 - SAVED Test read # 23 ident 211448 3221- 11633 against verified region 10038- 13220 - CANDIDATE hangs 4883 6750 - SAVED Test read # 25 ident 211450 3280- 11619 against verified region 10038- 13220 - CANDIDATE hangs 4863 6644 Test read # 30 ident 123914 3864- 11765 against verified region 10038- 13220 - CANDIDATE hangs 4821 6188 - SAVED Test read # 34 ident 179724 5158- 13218 against verified region 10038- 13220 - CANDIDATE hangs 3411 4892 - SAVED Test read # 35 ident 179726 5159- 13215 against verified region 10038- 13220 - CANDIDATE hangs 3417 4888 Test read # 36 ident 179725 5173- 13220 against verified region 10038- 13220 Test read # 37 ident 179727 5173- 13206 against verified region 10038- 13220 - CANDIDATE hangs 3411 4864 Test read # 38 ident 179728 5182- 13163 against verified region 10038- 13220 - CANDIDATE hangs 3444 4851 Test read # 47 ident 659345 7332- 13164 against verified region 10038- 13220 - CANDIDATE hangs 3451 2711 Test read # 48 ident 245748 7971- 12913 against verified region 10038- 13220 - CANDIDATE hangs 3632 2062 Test read # 49 ident 179729 8007- 13176 against verified region 10038- 13220 - CANDIDATE hangs 3433 2020 Test read # 50 ident 235510 8332- 13072 against verified region 10038- 13220 - CANDIDATE hangs 3530 1727 Test read # 51 ident 8922 8741- 12738 against verified region 10038- 13220 - CANDIDATE hangs 3808 1309 Test read # 52 ident 528077 8746- 12874 against verified region 10038- 13220 - CANDIDATE hangs 3673 1295 Test read # 53 ident 632003 8913- 12951 against verified region 10038- 13220 - CANDIDATE hangs 3599 1125 Test read # 55 ident 117329 9292- 13145 against verified region 10038- 13220 - CANDIDATE hangs 3466 743 Test read # 56 ident 197300 9318- 12598 against verified region 10038- 13220 - CANDIDATE hangs 3932 721 Test read # 57 ident 179210 9446- 12960 against verified region 10038- 13220 - CANDIDATE hangs 3614 591 Test read # 58 ident 146503 9470- 11339 against verified region 10038- 13220 - CANDIDATE hangs 5174 563 Test read # 59 ident 428687 9559- 12940 against verified region 10038- 13220 - CANDIDATE hangs 3604 483 Test read # 60 ident 219700 9568- 10786 against verified region 10038- 13220 - CANDIDATE hangs 5723 478 Test read # 61 ident 601542 9583- 12586 against verified region 10038- 13220 - CANDIDATE hangs 3959 456 Test read # 62 ident 403582 9598- 11377 against verified region 10038- 13220 - CANDIDATE hangs 5141 445 Test read # 63 ident 245476 9660- 12912 against verified region 10038- 13220 - CANDIDATE hangs 3643 379 Test read # 64 ident 574550 9661- 11810 against verified region 10038- 13220 - CANDIDATE hangs 4720 369 Test read # 65 ident 296350 9676- 12788 against verified region 10038- 13220 - CANDIDATE hangs 3757 366 Test read # 66 ident 296351 9718- 13039 against verified region 10038- 13220 - CANDIDATE hangs 3539 328 Test read # 67 ident 452352 9760- 12570 against verified region 10038- 13220 - CANDIDATE hangs 3964 299 Test read # 69 ident 20532 9931- 12911 against verified region 10038- 13220 - CANDIDATE hangs 3630 114 Test read # 70 ident 20533 9932- 12601 against verified region 10038- 13220 - CANDIDATE hangs 3948 128 Test read # 72 ident 348311 10267- 12782 against verified region 10038- 13220 - CANDIDATE hangs 3766 -202 Test read # 73 ident 206396 10281- 11945 against verified region 10038- 13220 - CANDIDATE hangs 4597 -219 Test read # 74 ident 490213 10292- 12939 against verified region 10038- 13220 - CANDIDATE hangs 3613 -231 Test read # 75 ident 187465 10323- 12042 against verified region 10038- 13220 - CANDIDATE hangs 4500 -271 Test read # 77 ident 13675 10739- 12715 against verified region 10038- 13220 - CANDIDATE hangs 3825 -660 Test read # 78 ident 286090 10890- 12592 against verified region 10038- 13220 - CANDIDATE hangs 3952 -814 Test read # 79 ident 705031 11380- 12555 against verified region 10038- 13220 - CANDIDATE hangs 3968 -1336 Found appropriate intersecting read. createUnitigs()-- read 514283 place 3 edgeTo tig 113067 reads # 22 211449- 705031 verified 13220- 10038 position 16557- 10038 covered 3411- 6450 BREAK at pos 13218 read 179724 isLow 0 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- tig 14 len 47360 first read 95721 with 1 placements - last read 125621 with 2 placements createUnitigs()-- read 95721 place 0 edgeTo tig 14 reads # 1 95723- 156805 verified 8374- 13 position 8374- 7 covered 0- 8268 SELF EXPECTED_3' Scan reads from #3 to #23 for low coordinate in verified region 789-8300 Test read # 3 ident 45065 789- 14865 against verified region 789- 8300 Test read # 4 ident 680638 1004- 11803 against verified region 789- 8300 - CANDIDATE hangs 977 3487 - SAVED Test read # 5 ident 680640 1004- 10689 against verified region 789- 8300 - CANDIDATE hangs 976 2377 Test read # 6 ident 680639 1019- 11804 against verified region 789- 8300 - CANDIDATE hangs 977 3490 Test read # 7 ident 299494 3035- 6279 against verified region 789- 8300 - CANDIDATE hangs 3000 -1976 Test read # 8 ident 678768 3338- 9770 against verified region 789- 8300 - CANDIDATE hangs 3310 1463 Test read # 9 ident 544409 3758- 9743 against verified region 789- 8300 - CANDIDATE hangs 3694 1455 Test read # 10 ident 475733 4418- 14394 against verified region 789- 8300 - CANDIDATE hangs 4382 6079 Test read # 11 ident 603958 4536- 14730 against verified region 789- 8300 - CANDIDATE hangs 4502 6410 Test read # 12 ident 125547 4539- 7060 against verified region 789- 8300 - CANDIDATE hangs 4497 -1192 Test read # 13 ident 238037 4692- 6448 against verified region 789- 8300 - CANDIDATE hangs 4669 -1809 Test read # 14 ident 481090 5154- 6767 against verified region 789- 8300 - CANDIDATE hangs 5123 -1493 Test read # 15 ident 254794 5362- 11334 against verified region 789- 8300 - CANDIDATE hangs 5318 3018 Test read # 16 ident 254797 5370- 12014 against verified region 789- 8300 - CANDIDATE hangs 5323 3697 Test read # 17 ident 254798 5382- 11979 against verified region 789- 8300 - CANDIDATE hangs 5333 3650 Test read # 18 ident 254799 5388- 10928 against verified region 789- 8300 - CANDIDATE hangs 5343 2609 Test read # 19 ident 254796 5398- 12008 against verified region 789- 8300 - CANDIDATE hangs 5349 3681 Test read # 20 ident 254795 5423- 11999 against verified region 789- 8300 - CANDIDATE hangs 5380 3679 Test read # 21 ident 355453 6015- 8518 against verified region 789- 8300 - CANDIDATE hangs 5971 240 Test read # 22 ident 709715 7028- 11945 against verified region 789- 8300 - CANDIDATE hangs 6973 3637 Test read # 23 ident 156805 7693- 9702 against verified region 789- 8300 - CANDIDATE hangs 7640 1423 Found appropriate intersecting read. createUnitigs()-- read 125621 place 0 edgeTo tig 14 reads # 3 45065- 156805 verified 789- 8300 position 40- 8300 covered 752- 8195 BREAK at pos 1004 read 680638 isLow 1 sim 1.0000 createUnitigs()-- read 125621 place 1 edgeTo tig 14 reads # 40 32399- 486638 verified 39069- 45421 position 39069- 47341 covered 0- 6263 SELF EXPECTED_3' createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 15 len 27825 first read 275648 with 4 placements - last read 330971 with 3 placements createUnitigs()-- read 275648 place 0 edgeTo tig 15 reads # 1 469513- 247893 verified 1563- 11071 position 37- 11071 covered 1547- 10970 SELF EXPECTED_5' Scan reads from #47 to #69 for high coordinate in verified region 20621-27825 Test read # 47 ident 462279 14485- 23385 against verified region 20621- 27825 - CANDIDATE hangs -6095 -8245 - SAVED Test read # 60 ident 284009 17839- 24136 against verified region 20621- 27825 - CANDIDATE hangs -2783 -7510 - SAVED Test read # 61 ident 284006 17844- 24148 against verified region 20621- 27825 - CANDIDATE hangs -2769 -7493 - SAVED Test read # 62 ident 284007 17844- 24139 against verified region 20621- 27825 - CANDIDATE hangs -2764 -7501 Test read # 63 ident 284008 17854- 24127 against verified region 20621- 27825 - CANDIDATE hangs -2766 -7522 Test read # 64 ident 330972 18059- 27642 against verified region 20621- 27825 - CANDIDATE hangs -2551 -3987 - SAVED Test read # 65 ident 330973 18060- 24146 against verified region 20621- 27825 - CANDIDATE hangs -2562 -7504 Test read # 66 ident 330971 18066- 27825 against verified region 20621- 27825 Test read # 67 ident 330970 18456- 24349 against verified region 20621- 27825 - CANDIDATE hangs -2192 -7311 Test read # 68 ident 721315 21140- 24499 against verified region 20621- 27825 - CANDIDATE hangs 492 -7163 Test read # 69 ident 284005 21357- 24122 against verified region 20621- 27825 - CANDIDATE hangs 704 -7522 Found appropriate intersecting read. createUnitigs()-- read 275648 place 1 edgeTo tig 15 reads # 47 462279- 284005 verified 20621- 27825 position 20621- 31640 covered 0- 7201 BREAK at pos 27642 read 330972 isLow 0 sim 1.0000 Scan reads from #16 to #16 for low coordinate in verified region 10565-12914 Test read # 16 ident 319733 10565- 12914 against verified region 10565- 12914 Failed to find appropriate intersecting read. createUnitigs()-- read 275648 place 2 edgeTo tig 228 reads # 16 319733- 319733 verified 12914- 10565 position 14244- 3242 covered 1330- 3647 EXPECTED_5' NO_OVERLAPS Scan reads from #19 to #168 for low coordinate in verified region 12419-18732 Test read # 19 ident 657005 3791- 13027 against verified region 12419- 18732 Test read # 24 ident 101075 5295- 13472 against verified region 12419- 18732 Test read # 34 ident 514863 5757- 15905 against verified region 12419- 18732 Test read # 36 ident 514865 5767- 15780 against verified region 12419- 18732 Test read # 37 ident 514864 5777- 15553 against verified region 12419- 18732 Test read # 52 ident 353666 6400- 15278 against verified region 12419- 18732 Test read # 56 ident 255282 6569- 15208 against verified region 12419- 18732 Test read # 75 ident 133604 8344- 14566 against verified region 12419- 18732 Test read # 78 ident 133605 8392- 14573 against verified region 12419- 18732 Test read # 79 ident 133602 8471- 14560 against verified region 12419- 18732 Test read # 86 ident 61899 8885- 14783 against verified region 12419- 18732 Test read # 87 ident 61898 8887- 14798 against verified region 12419- 18732 Test read # 88 ident 61896 8893- 14798 against verified region 12419- 18732 Test read # 89 ident 61897 8893- 14798 against verified region 12419- 18732 Test read # 95 ident 136184 9090- 13754 against verified region 12419- 18732 Test read # 101 ident 654395 9593- 13151 against verified region 12419- 18732 Test read # 110 ident 63749 10387- 14633 against verified region 12419- 18732 Test read # 168 ident 363745 17416- 18732 against verified region 12419- 18732 - CANDIDATE hangs 5038 -4630 Failed to find appropriate intersecting read. createUnitigs()-- read 275648 place 3 edgeTo tig 582080 reads # 19 657005- 363745 verified 18732- 12419 position 23479- 12419 covered 5038- 10970 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #0 to #16 for low coordinate in verified region 0-7271 Test read # 0 ident 275648 0- 11064 against verified region 0- 7271 Test read # 1 ident 469513 1563- 3406 against verified region 0- 7271 - CANDIDATE hangs 4090 -3807 Test read # 2 ident 467587 1681- 12041 against verified region 0- 7271 - CANDIDATE hangs 4201 4735 - SAVED Test read # 3 ident 467588 1709- 12042 against verified region 0- 7271 - CANDIDATE hangs 4204 4722 Test read # 4 ident 284010 1719- 3138 against verified region 0- 7271 - CANDIDATE hangs 4254 -4057 Test read # 5 ident 467586 1739- 12056 against verified region 0- 7271 - CANDIDATE hangs 4233 4745 Test read # 6 ident 153078 1895- 3673 against verified region 0- 7271 - CANDIDATE hangs 4415 -3543 Test read # 14 ident 482710 5796- 14281 against verified region 0- 7271 - CANDIDATE hangs 8248 6956 Test read # 15 ident 404540 5968- 20404 against verified region 0- 7271 - CANDIDATE hangs -11911 -7354 Test read # 16 ident 404539 6044- 10387 against verified region 0- 7271 - CANDIDATE hangs 8511 3121 Found appropriate intersecting read. createUnitigs()-- read 330971 place 0 edgeTo tig 15 reads # 0 275648- 404539 verified 0- 7271 position -2505- 7271 covered 2543- 9692 BREAK at pos 1681 read 467587 isLow 1 sim 0.7688 createUnitigs()-- read 330971 place 1 edgeTo tig 15 reads # 15 404540- 284005 verified 18032- 27642 position 18032- 27813 covered 0- 9472 SELF EXPECTED_3' Scan reads from #16 to #29 for high coordinate in verified region 10565-13104 Test read # 16 ident 319733 10565- 12914 against verified region 10565- 13104 - CANDIDATE hangs 3872 -3512 Test read # 20 ident 157124 10815- 13071 against verified region 10565- 13104 - CANDIDATE hangs 3723 -3762 Test read # 25 ident 619937 11502- 13104 against verified region 10565- 13104 Test read # 29 ident 351113 11845- 12983 against verified region 10565- 13104 - CANDIDATE hangs 3809 -4769 Failed to find appropriate intersecting read. createUnitigs()-- read 330971 place 2 edgeTo tig 228 reads # 16 319733- 351113 verified 13104- 10565 position 16791- 7061 covered 3691- 6180 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 20 len 6594 first read 202548 with 4 placements - last read 361602 with 4 placements createUnitigs()-- read 202548 place 0 edgeTo tig 20 reads # 1 361602- 202546 verified 6510- 3 position 6510- 0 covered 0- 6480 SELF Scan reads from #30 to #37 for high coordinate in verified region 22248-23815 Test read # 30 ident 649997 22248- 28446 against verified region 22248- 23815 Test read # 31 ident 649998 22248- 28437 against verified region 22248- 23815 Test read # 32 ident 650003 22251- 28431 against verified region 22248- 23815 Test read # 33 ident 649999 22252- 28448 against verified region 22248- 23815 Test read # 34 ident 650000 22252- 28422 against verified region 22248- 23815 Test read # 35 ident 650002 22253- 28447 against verified region 22248- 23815 Test read # 36 ident 650001 22255- 28440 against verified region 22248- 23815 Test read # 37 ident 650004 22261- 28442 against verified region 22248- 23815 Failed to find appropriate intersecting read. createUnitigs()-- read 202548 place 1 edgeTo tig 127 reads # 30 649997- 650004 verified 23815- 22248 position 23815- 17326 covered 0- 1560 EXPECTED_3' NO_OVERLAPS Scan reads from #7 to #28 for high coordinate in verified region 3786-6829 Test read # 7 ident 186712 3786- 9897 against verified region 3786- 6829 Test read # 8 ident 594005 3792- 10189 against verified region 3786- 6829 Test read # 10 ident 685671 3906- 7908 against verified region 3786- 6829 Test read # 11 ident 670234 3949- 10634 against verified region 3786- 6829 Test read # 12 ident 670233 3970- 10400 against verified region 3786- 6829 Test read # 13 ident 601816 3999- 9657 against verified region 3786- 6829 Test read # 14 ident 428686 4045- 7386 against verified region 3786- 6829 Test read # 15 ident 665461 4065- 7562 against verified region 3786- 6829 Test read # 16 ident 575325 4086- 5824 against verified region 3786- 6829 - CANDIDATE hangs 993 -3787 Test read # 17 ident 356284 4103- 7943 against verified region 3786- 6829 Test read # 18 ident 201244 4117- 7355 against verified region 3786- 6829 Test read # 19 ident 141778 4152- 6205 against verified region 3786- 6829 - CANDIDATE hangs 617 -3845 Test read # 21 ident 382027 4178- 7297 against verified region 3786- 6829 Test read # 22 ident 683629 4217- 6272 against verified region 3786- 6829 - CANDIDATE hangs 551 -3911 Test read # 23 ident 243402 4218- 10402 against verified region 3786- 6829 Test read # 25 ident 382028 4261- 7144 against verified region 3786- 6829 Test read # 26 ident 562968 4326- 10875 against verified region 3786- 6829 Test read # 28 ident 331347 4396- 6255 against verified region 3786- 6829 - CANDIDATE hangs 577 -4092 Failed to find appropriate intersecting read. createUnitigs()-- read 202548 place 2 edgeTo tig 1390 reads # 7 186712- 331347 verified 6829- 3786 position 6829- 302 covered 0- 2982 EXPECTED_3' NO_OVERLAPS Scan reads from #22 to #78 for low coordinate in verified region 10062-13220 Test read # 22 ident 211449 3220- 11515 against verified region 10062- 13220 Test read # 23 ident 211448 3221- 11633 against verified region 10062- 13220 Test read # 25 ident 211450 3280- 11619 against verified region 10062- 13220 Test read # 30 ident 123914 3864- 11765 against verified region 10062- 13220 Test read # 34 ident 179724 5158- 13218 against verified region 10062- 13220 Test read # 35 ident 179726 5159- 13215 against verified region 10062- 13220 Test read # 36 ident 179725 5173- 13220 against verified region 10062- 13220 Test read # 37 ident 179727 5173- 13206 against verified region 10062- 13220 Test read # 38 ident 179728 5182- 13163 against verified region 10062- 13220 Test read # 47 ident 659345 7332- 13164 against verified region 10062- 13220 Test read # 48 ident 245748 7971- 12913 against verified region 10062- 13220 Test read # 49 ident 179729 8007- 13176 against verified region 10062- 13220 Test read # 50 ident 235510 8332- 13072 against verified region 10062- 13220 Test read # 51 ident 8922 8741- 12738 against verified region 10062- 13220 Test read # 52 ident 528077 8746- 12874 against verified region 10062- 13220 Test read # 53 ident 632003 8913- 12951 against verified region 10062- 13220 Test read # 55 ident 117329 9292- 13145 against verified region 10062- 13220 Test read # 56 ident 197300 9318- 12598 against verified region 10062- 13220 Test read # 57 ident 179210 9446- 12960 against verified region 10062- 13220 Test read # 59 ident 428687 9559- 12940 against verified region 10062- 13220 Test read # 60 ident 219700 9568- 10786 against verified region 10062- 13220 Test read # 61 ident 601542 9583- 12586 against verified region 10062- 13220 Test read # 62 ident 403582 9598- 11377 against verified region 10062- 13220 Test read # 63 ident 245476 9660- 12912 against verified region 10062- 13220 Test read # 65 ident 296350 9676- 12788 against verified region 10062- 13220 Test read # 66 ident 296351 9718- 13039 against verified region 10062- 13220 Test read # 67 ident 452352 9760- 12570 against verified region 10062- 13220 Test read # 69 ident 20532 9931- 12911 against verified region 10062- 13220 Test read # 70 ident 20533 9932- 12601 against verified region 10062- 13220 Test read # 72 ident 348311 10267- 12782 against verified region 10062- 13220 - CANDIDATE hangs 182 -3813 Test read # 73 ident 206396 10281- 11945 against verified region 10062- 13220 - CANDIDATE hangs 200 -4645 Test read # 74 ident 490213 10292- 12939 against verified region 10062- 13220 - CANDIDATE hangs 212 -3661 Test read # 75 ident 187465 10323- 12042 against verified region 10062- 13220 - CANDIDATE hangs 252 -4548 Test read # 77 ident 13675 10739- 12715 against verified region 10062- 13220 - CANDIDATE hangs 642 -3871 Test read # 78 ident 286090 10890- 12592 against verified region 10062- 13220 - CANDIDATE hangs 796 -4001 Failed to find appropriate intersecting read. createUnitigs()-- read 202548 place 3 edgeTo tig 113067 reads # 22 211449- 286090 verified 10062- 13220 position 10062- 16592 covered 0- 3081 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 361602 place 0 edgeTo tig 20 reads # 0 202548- 202546 verified 6511- 3 position 6594- 3 covered 82- 6560 SELF EXPECTED_5' Scan reads from #35 to #35 for low coordinate in verified region 22253-23900 Test read # 35 ident 650002 22253- 28447 against verified region 22253- 23900 Failed to find appropriate intersecting read. createUnitigs()-- read 361602 place 1 edgeTo tig 127 reads # 35 650002- 650002 verified 23900- 22253 position 23900- 17338 covered 0- 1645 NO_OVERLAPS Scan reads from #7 to #28 for low coordinate in verified region 3786-6914 Test read # 7 ident 186712 3786- 9897 against verified region 3786- 6914 Test read # 8 ident 594005 3792- 10189 against verified region 3786- 6914 - CANDIDATE hangs -3290 -3494 - SAVED Test read # 10 ident 685671 3906- 7908 against verified region 3786- 6914 - CANDIDATE hangs -1021 -3608 Test read # 11 ident 670234 3949- 10634 against verified region 3786- 6914 - CANDIDATE hangs -3644 -3615 Test read # 12 ident 670233 3970- 10400 against verified region 3786- 6914 - CANDIDATE hangs -3407 -3633 Test read # 13 ident 601816 3999- 9657 against verified region 3786- 6914 - CANDIDATE hangs -2788 -3711 Test read # 14 ident 428686 4045- 7386 against verified region 3786- 6914 - CANDIDATE hangs -480 -3737 Test read # 15 ident 665461 4065- 7562 against verified region 3786- 6914 - CANDIDATE hangs -651 -3760 Test read # 16 ident 575325 4086- 5824 against verified region 3786- 6914 - CANDIDATE hangs 1085 -3781 Test read # 17 ident 356284 4103- 7943 against verified region 3786- 6914 - CANDIDATE hangs -1051 -3792 Test read # 18 ident 201244 4117- 7355 against verified region 3786- 6914 - CANDIDATE hangs -447 -3820 Test read # 21 ident 382027 4178- 7297 against verified region 3786- 6914 - CANDIDATE hangs -395 -3866 Test read # 22 ident 683629 4217- 6272 against verified region 3786- 6914 - CANDIDATE hangs 645 -3906 Test read # 23 ident 243402 4218- 10402 against verified region 3786- 6914 - CANDIDATE hangs -3409 -3879 Test read # 25 ident 382028 4261- 7144 against verified region 3786- 6914 - CANDIDATE hangs -247 -3952 Test read # 26 ident 562968 4326- 10875 against verified region 3786- 6914 - CANDIDATE hangs -4009 -4032 Test read # 28 ident 331347 4396- 6255 against verified region 3786- 6914 - CANDIDATE hangs 665 -4086 Found appropriate intersecting read. createUnitigs()-- read 361602 place 2 edgeTo tig 1390 reads # 7 186712- 331347 verified 6914- 3786 position 6914- 307 covered 0- 3066 BREAK at pos 3792 read 594005 isLow 1 sim 1.0000 Scan reads from #22 to #78 for high coordinate in verified region 9967-13220 Test read # 22 ident 211449 3220- 11515 against verified region 9967- 13220 - CANDIDATE hangs -6656 -5003 - SAVED Test read # 23 ident 211448 3221- 11633 against verified region 9967- 13220 - CANDIDATE hangs -6693 -4916 - SAVED Test read # 25 ident 211450 3280- 11619 against verified region 9967- 13220 - CANDIDATE hangs -6587 -4897 Test read # 28 ident 547165 3837- 10341 against verified region 9967- 13220 - CANDIDATE hangs -5892 -6019 Test read # 30 ident 123914 3864- 11765 against verified region 9967- 13220 - CANDIDATE hangs -6131 -4855 - SAVED Test read # 34 ident 179724 5158- 13218 against verified region 9967- 13220 - CANDIDATE hangs -4835 -3413 - SAVED Test read # 35 ident 179726 5159- 13215 against verified region 9967- 13220 - CANDIDATE hangs -4831 -3420 Test read # 36 ident 179725 5173- 13220 against verified region 9967- 13220 Test read # 37 ident 179727 5173- 13206 against verified region 9967- 13220 - CANDIDATE hangs -4807 -3413 Test read # 38 ident 179728 5182- 13163 against verified region 9967- 13220 - CANDIDATE hangs -4794 -3448 Test read # 47 ident 659345 7332- 13164 against verified region 9967- 13220 - CANDIDATE hangs -2654 -3451 Test read # 48 ident 245748 7971- 12913 against verified region 9967- 13220 - CANDIDATE hangs -2005 -3675 Test read # 49 ident 179729 8007- 13176 against verified region 9967- 13220 - CANDIDATE hangs -1963 -3424 Test read # 50 ident 235510 8332- 13072 against verified region 9967- 13220 - CANDIDATE hangs -1667 -3528 Test read # 51 ident 8922 8741- 12738 against verified region 9967- 13220 - CANDIDATE hangs -1250 -3849 Test read # 52 ident 528077 8746- 12874 against verified region 9967- 13220 - CANDIDATE hangs -1238 -3714 Test read # 53 ident 632003 8913- 12951 against verified region 9967- 13220 - CANDIDATE hangs -1068 -3643 Test read # 55 ident 117329 9292- 13145 against verified region 9967- 13220 - CANDIDATE hangs -686 -3461 Test read # 57 ident 179210 9446- 12960 against verified region 9967- 13220 - CANDIDATE hangs -527 -3616 Test read # 59 ident 428687 9559- 12940 against verified region 9967- 13220 - CANDIDATE hangs -426 -3647 Test read # 61 ident 601542 9583- 12586 against verified region 9967- 13220 - CANDIDATE hangs -401 -4002 Test read # 63 ident 245476 9660- 12912 against verified region 9967- 13220 - CANDIDATE hangs -320 -3685 Test read # 65 ident 296350 9676- 12788 against verified region 9967- 13220 - CANDIDATE hangs -310 -3797 Test read # 66 ident 296351 9718- 13039 against verified region 9967- 13220 - CANDIDATE hangs -263 -3542 Test read # 67 ident 452352 9760- 12570 against verified region 9967- 13220 - CANDIDATE hangs -241 -4007 Test read # 69 ident 20532 9931- 12911 against verified region 9967- 13220 - CANDIDATE hangs -58 -3673 Test read # 74 ident 490213 10292- 12939 against verified region 9967- 13220 - CANDIDATE hangs 295 -3656 Test read # 77 ident 13675 10739- 12715 against verified region 9967- 13220 - CANDIDATE hangs 733 -3866 Test read # 78 ident 286090 10890- 12592 against verified region 9967- 13220 - CANDIDATE hangs 887 -3995 Found appropriate intersecting read. createUnitigs()-- read 361602 place 3 edgeTo tig 113067 reads # 22 211449- 286090 verified 9967- 13220 position 9967- 16583 covered 0- 3147 BREAK at pos 13218 read 179724 isLow 0 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 24 len 11329 first read 626322 with 2 placements - last read 626321 with 4 placements createUnitigs()-- read 626322 place 0 edgeTo tig 24 reads # 1 626323- 628488 verified 7778- 10 position 7778- -2 covered 0- 7746 SELF Scan reads from #2 to #42 for low coordinate in verified region 11300-18890 Test read # 2 ident 443923 1158- 15317 against verified region 11300- 18890 Test read # 6 ident 443924 4287- 15420 against verified region 11300- 18890 Test read # 8 ident 252832 4919- 14030 against verified region 11300- 18890 Test read # 9 ident 563812 7853- 14710 against verified region 11300- 18890 Test read # 10 ident 414711 7871- 14779 against verified region 11300- 18890 Test read # 13 ident 208095 8487- 14525 against verified region 11300- 18890 Test read # 14 ident 289094 8886- 14074 against verified region 11300- 18890 Test read # 15 ident 527451 9272- 13461 against verified region 11300- 18890 Test read # 18 ident 603778 11140- 17289 against verified region 11300- 18890 Test read # 19 ident 603775 11155- 17264 against verified region 11300- 18890 Test read # 20 ident 603777 11159- 17264 against verified region 11300- 18890 Test read # 21 ident 603776 11161- 17273 against verified region 11300- 18890 Test read # 22 ident 62058 11306- 22243 against verified region 11300- 18890 - CANDIDATE hangs 321 3353 - SAVED Test read # 23 ident 527452 11489- 13596 against verified region 11300- 18890 - CANDIDATE hangs 146 -5555 Test read # 24 ident 510119 11679- 14590 against verified region 11300- 18890 - CANDIDATE hangs 322 -4557 Test read # 25 ident 510120 11794- 14145 against verified region 11300- 18890 - CANDIDATE hangs 442 -4999 Test read # 26 ident 716177 11873- 14908 against verified region 11300- 18890 - CANDIDATE hangs 520 -4244 Test read # 42 ident 520029 17937- 23261 against verified region 11300- 18890 - CANDIDATE hangs 7116 4676 Found appropriate intersecting read. createUnitigs()-- read 626322 place 1 edgeTo tig 113053 reads # 2 443923- 520029 verified 11300- 18890 position 11300- 19127 covered 0- 7746 BREAK at pos 11306 read 62058 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 626321 place 0 edgeTo tig 24 reads # 0 626322- 628488 verified 1548- 10554 position 1536- 11327 covered 0- 8985 SELF EXPECTED_3' Scan reads from #21 to #22 for high coordinate in verified region 12060-13160 Test read # 21 ident 623351 7331- 13160 against verified region 12060- 13160 Test read # 22 ident 623352 7485- 13118 against verified region 12060- 13160 - CANDIDATE hangs 8696 4566 - SAVED Found appropriate intersecting read. createUnitigs()-- read 626321 place 1 edgeTo tig 44 reads # 21 623351- 623352 verified 13160- 12060 position 21820- 12060 covered 8666- 9766 NOT_SIMILAR Scan reads from #64 to #74 for high coordinate in verified region 16598-18226 Test read # 64 ident 154322 11100- 18226 against verified region 16598- 18226 Test read # 74 ident 378415 12512- 17774 against verified region 16598- 18226 - CANDIDATE hangs 8671 4127 - SAVED Found appropriate intersecting read. createUnitigs()-- read 626321 place 2 edgeTo tig 113052 reads # 64 154322- 378415 verified 18226- 16598 position 26429- 16598 covered 8187- 9766 NOT_SIMILAR Scan reads from #0 to #26 for high coordinate in verified region 7839-17344 Test read # 0 ident 482852 0- 10273 against verified region 7839- 17344 - CANDIDATE hangs 7188 7562 - SAVED Test read # 1 ident 381623 867- 10204 against verified region 7839- 17344 - CANDIDATE hangs 7331 6756 Test read # 2 ident 443923 1158- 15317 against verified region 7839- 17344 - CANDIDATE hangs 2172 6445 - SAVED Test read # 3 ident 414712 2360- 12689 against verified region 7839- 17344 - CANDIDATE hangs 5597 6133 Test read # 4 ident 334185 3308- 12072 against verified region 7839- 17344 - CANDIDATE hangs 6275 5268 Test read # 5 ident 49604 3610- 9808 against verified region 7839- 17344 - CANDIDATE hangs 7682 4043 Test read # 6 ident 443924 4287- 15420 against verified region 7839- 17344 - CANDIDATE hangs 2174 3498 - SAVED Test read # 7 ident 49603 4792- 9871 against verified region 7839- 17344 - CANDIDATE hangs 7651 2941 Test read # 8 ident 252832 4919- 14030 against verified region 7839- 17344 - CANDIDATE hangs 3529 2891 Test read # 9 ident 563812 7853- 14710 against verified region 7839- 17344 - CANDIDATE hangs 2931 -2 Test read # 10 ident 414711 7871- 14779 against verified region 7839- 17344 - CANDIDATE hangs 2835 51 Test read # 13 ident 208095 8487- 14525 against verified region 7839- 17344 - CANDIDATE hangs 3123 -626 Test read # 14 ident 289094 8886- 14074 against verified region 7839- 17344 - CANDIDATE hangs 3557 -987 Test read # 15 ident 527451 9272- 13461 against verified region 7839- 17344 - CANDIDATE hangs 4201 -1391 Test read # 18 ident 603778 11140- 17289 against verified region 7839- 17344 - CANDIDATE hangs 473 -3300 Test read # 19 ident 603775 11155- 17264 against verified region 7839- 17344 - CANDIDATE hangs 500 -3310 Test read # 20 ident 603777 11159- 17264 against verified region 7839- 17344 - CANDIDATE hangs 504 -3318 Test read # 21 ident 603776 11161- 17273 against verified region 7839- 17344 - CANDIDATE hangs 538 -3316 Test read # 22 ident 62058 11306- 22243 against verified region 7839- 17344 Test read # 23 ident 527452 11489- 13596 against verified region 7839- 17344 - CANDIDATE hangs 4028 -3691 Test read # 24 ident 510119 11679- 14590 against verified region 7839- 17344 - CANDIDATE hangs 3018 -3864 Test read # 25 ident 510120 11794- 14145 against verified region 7839- 17344 - CANDIDATE hangs 3462 -3984 Test read # 26 ident 716177 11873- 14908 against verified region 7839- 17344 - CANDIDATE hangs 2709 -4061 Found appropriate intersecting read. createUnitigs()-- read 626321 place 3 edgeTo tig 113053 reads # 0 482852- 716177 verified 17344- 7839 position 17668- 7839 covered 0- 9766 BREAK at pos 15420 read 443924 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 30 len 11027 first read 282651 with 1 placements - last read 228336 with 2 placements createUnitigs()-- read 282651 place 0 edgeTo tig 30 reads # 1 282653- 228336 verified 9- 6382 position 8- 6382 covered 0- 6359 SELF createUnitigs()-- read 228336 place 0 edgeTo tig 30 reads # 0 282651- 202898 verified 11022- 5779 position 11023- 5779 covered 0- 5211 SELF Scan reads from #6 to #15 for low coordinate in verified region 3438-6899 Test read # 6 ident 69290 3438- 11723 against verified region 3438- 6899 Test read # 7 ident 69288 3443- 11715 against verified region 3438- 6899 - CANDIDATE hangs -4815 -1796 - SAVED Test read # 8 ident 69289 3479- 11732 against verified region 3438- 6899 - CANDIDATE hangs -4839 -1844 Test read # 9 ident 69287 3556- 11729 against verified region 3438- 6899 - CANDIDATE hangs -4835 -1897 Test read # 10 ident 69286 3645- 11731 against verified region 3438- 6899 - CANDIDATE hangs -4841 -1993 Test read # 11 ident 591853 4176- 6996 against verified region 3438- 6899 - CANDIDATE hangs -121 -2548 Test read # 12 ident 679092 5611- 13820 against verified region 3438- 6899 - CANDIDATE hangs -6924 -3957 Test read # 14 ident 211518 6083- 13518 against verified region 3438- 6899 - CANDIDATE hangs -6599 -4424 Test read # 15 ident 211520 6104- 11711 against verified region 3438- 6899 - CANDIDATE hangs -4782 -4446 Found appropriate intersecting read. createUnitigs()-- read 228336 place 1 edgeTo tig 113078 reads # 6 69290- 211520 verified 6899- 3438 position 6899- 1648 covered 0- 3415 BREAK at pos 3443 read 69288 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 32 len 9812 first read 547485 with 3 placements - last read 547485 with 3 placements createUnitigs()-- read 547485 place 0 edgeTo tig 32 reads # 1 547487- 641670 verified 3- 9762 position 1- 9807 covered 0- 9766 SELF Scan reads from #8 to #97 for high coordinate in verified region 9662-17693 Test read # 8 ident 438982 3647- 13750 against verified region 9662- 17693 - CANDIDATE hangs -5975 -5760 - SAVED Test read # 9 ident 12742 3742- 10252 against verified region 9662- 17693 - CANDIDATE hangs -5899 -9232 Test read # 14 ident 192783 4120- 14326 against verified region 9662- 17693 - CANDIDATE hangs -5465 -5175 - SAVED Test read # 15 ident 192782 4173- 12472 against verified region 9662- 17693 - CANDIDATE hangs -5423 -7028 Test read # 16 ident 12745 4479- 10389 against verified region 9662- 17693 - CANDIDATE hangs -5187 -9111 Test read # 17 ident 263039 4579- 12041 against verified region 9662- 17693 - CANDIDATE hangs -5048 -7472 Test read # 18 ident 101785 4599- 10929 against verified region 9662- 17693 - CANDIDATE hangs -5016 -8553 Test read # 19 ident 20140 4736- 11547 against verified region 9662- 17693 - CANDIDATE hangs -4938 -7978 Test read # 20 ident 358892 5145- 13746 against verified region 9662- 17693 - CANDIDATE hangs -4462 -5768 Test read # 21 ident 629234 5174- 14631 against verified region 9662- 17693 - CANDIDATE hangs -4483 -4876 - SAVED Test read # 23 ident 685079 5442- 11689 against verified region 9662- 17693 - CANDIDATE hangs -4167 -7804 Test read # 24 ident 584694 5639- 13629 against verified region 9662- 17693 - CANDIDATE hangs -3981 -5890 Test read # 25 ident 10179 5759- 11379 against verified region 9662- 17693 - CANDIDATE hangs -3879 -8125 Test read # 26 ident 10178 5760- 11855 against verified region 9662- 17693 - CANDIDATE hangs -3869 -7646 Test read # 27 ident 631358 5785- 12128 against verified region 9662- 17693 - CANDIDATE hangs -3827 -7383 Test read # 28 ident 454985 5925- 13090 against verified region 9662- 17693 - CANDIDATE hangs -3702 -6416 Test read # 29 ident 396658 6105- 12149 against verified region 9662- 17693 - CANDIDATE hangs -3537 -7365 Test read # 30 ident 147926 6128- 13051 against verified region 9662- 17693 - CANDIDATE hangs -3491 -6446 Test read # 32 ident 559643 6644- 10560 against verified region 9662- 17693 - CANDIDATE hangs -2988 -8921 Test read # 33 ident 263040 6712- 12060 against verified region 9662- 17693 - CANDIDATE hangs -2927 -7452 Test read # 35 ident 637664 6787- 15279 against verified region 9662- 17693 - CANDIDATE hangs -2855 -4260 - SAVED Test read # 36 ident 665406 7251- 15243 against verified region 9662- 17693 - CANDIDATE hangs -2384 -4296 Test read # 37 ident 665407 7336- 15231 against verified region 9662- 17693 - CANDIDATE hangs -2299 -4311 Test read # 38 ident 262872 7352- 16235 against verified region 9662- 17693 - CANDIDATE hangs -2289 -3358 - SAVED Test read # 40 ident 170760 7692- 11787 against verified region 9662- 17693 - CANDIDATE hangs -1967 -7712 Test read # 41 ident 348459 7760- 11863 against verified region 9662- 17693 - CANDIDATE hangs -1900 -7639 Test read # 42 ident 348460 7835- 14224 against verified region 9662- 17693 - CANDIDATE hangs -1800 -5298 Test read # 43 ident 536628 8028- 14308 against verified region 9662- 17693 - CANDIDATE hangs -1571 -5268 Test read # 44 ident 561714 8100- 14980 against verified region 9662- 17693 - CANDIDATE hangs -1630 -4499 Test read # 46 ident 373241 8305- 16220 against verified region 9662- 17693 - CANDIDATE hangs -1341 -3340 Test read # 47 ident 443260 8366- 17094 against verified region 9662- 17693 - CANDIDATE hangs -1276 -2486 - SAVED Test read # 48 ident 473128 8504- 12190 against verified region 9662- 17693 - CANDIDATE hangs -1172 -7324 Test read # 49 ident 473129 8826- 11765 against verified region 9662- 17693 - CANDIDATE hangs -832 -7740 Test read # 50 ident 145176 8840- 17315 against verified region 9662- 17693 - CANDIDATE hangs -861 -2292 - SAVED Test read # 51 ident 716971 8945- 13525 against verified region 9662- 17693 - CANDIDATE hangs -712 -5988 Test read # 52 ident 653305 9051- 12481 against verified region 9662- 17693 - CANDIDATE hangs -603 -7042 Test read # 53 ident 533344 9088- 14090 against verified region 9662- 17693 - CANDIDATE hangs -571 -5434 Test read # 54 ident 440934 9126- 12287 against verified region 9662- 17693 - CANDIDATE hangs -540 -7224 Test read # 55 ident 393306 9132- 12839 against verified region 9662- 17693 - CANDIDATE hangs -541 -6667 Test read # 56 ident 339091 9269- 12477 against verified region 9662- 17693 - CANDIDATE hangs -385 -7047 Test read # 57 ident 339092 9299- 15356 against verified region 9662- 17693 - CANDIDATE hangs -371 -4181 Test read # 58 ident 339093 9305- 15390 against verified region 9662- 17693 - CANDIDATE hangs -375 -4144 Test read # 59 ident 339094 9381- 15386 against verified region 9662- 17693 - CANDIDATE hangs -293 -4141 Test read # 60 ident 547489 9717- 12468 against verified region 9662- 17693 - CANDIDATE hangs 40 -7033 Test read # 61 ident 220650 9774- 11056 against verified region 9662- 17693 - CANDIDATE hangs 115 -8440 Test read # 62 ident 36332 9808- 12834 against verified region 9662- 17693 - CANDIDATE hangs 140 -6672 Test read # 63 ident 36330 10314- 13721 against verified region 9662- 17693 - CANDIDATE hangs 653 -5829 Test read # 64 ident 307529 10461- 14653 against verified region 9662- 17693 - CANDIDATE hangs 797 -4885 Test read # 65 ident 185854 10854- 16604 against verified region 9662- 17693 - CANDIDATE hangs 1144 -2932 Test read # 66 ident 185856 10860- 16691 against verified region 9662- 17693 - CANDIDATE hangs 1144 -2839 Test read # 67 ident 185853 10861- 16741 against verified region 9662- 17693 - CANDIDATE hangs 1148 -2798 Test read # 68 ident 185857 10865- 16604 against verified region 9662- 17693 - CANDIDATE hangs 1148 -2888 Test read # 69 ident 185859 10924- 16602 against verified region 9662- 17693 - CANDIDATE hangs 1171 -2888 Test read # 70 ident 185855 10941- 16678 against verified region 9662- 17693 - CANDIDATE hangs 1237 -2849 Test read # 71 ident 158917 10954- 13886 against verified region 9662- 17693 - CANDIDATE hangs 1279 -5624 Test read # 72 ident 177558 11020- 17693 against verified region 9662- 17693 Test read # 73 ident 185858 11052- 16703 against verified region 9662- 17693 - CANDIDATE hangs 1296 -2810 Test read # 74 ident 247220 11096- 14691 against verified region 9662- 17693 - CANDIDATE hangs 1443 -4845 Test read # 75 ident 46978 11100- 12577 against verified region 9662- 17693 - CANDIDATE hangs 1425 -6929 Test read # 76 ident 307003 11433- 14146 against verified region 9662- 17693 - CANDIDATE hangs 1761 -5357 Test read # 77 ident 443261 11478- 17157 against verified region 9662- 17693 - CANDIDATE hangs 1783 -2417 Test read # 83 ident 214100 12447- 16154 against verified region 9662- 17693 - CANDIDATE hangs 2767 -3402 Test read # 84 ident 404801 12634- 15578 against verified region 9662- 17693 - CANDIDATE hangs 2954 -3967 Test read # 86 ident 2989 12697- 15496 against verified region 9662- 17693 - CANDIDATE hangs 3023 -4047 Test read # 87 ident 307004 12863- 14083 against verified region 9662- 17693 - CANDIDATE hangs 3178 -5431 Test read # 89 ident 595171 13540- 15747 against verified region 9662- 17693 - CANDIDATE hangs 3855 -3806 Test read # 90 ident 477347 13581- 15215 against verified region 9662- 17693 - CANDIDATE hangs 3893 -4321 Test read # 93 ident 310242 13886- 17059 against verified region 9662- 17693 - CANDIDATE hangs 4190 -2513 Test read # 94 ident 88348 14103- 16278 against verified region 9662- 17693 - CANDIDATE hangs 4402 -3283 Test read # 95 ident 443259 14538- 17054 against verified region 9662- 17693 - CANDIDATE hangs 4842 -2516 Test read # 97 ident 603826 14918- 15967 against verified region 9662- 17693 - CANDIDATE hangs 5205 -3600 Found appropriate intersecting read. createUnitigs()-- read 547485 place 1 edgeTo tig 113066 reads # 8 438982- 603826 verified 9662- 17693 position 9662- 19526 covered 0- 7839 BREAK at pos 17315 read 145176 isLow 0 sim 1.0000 Scan reads from #17 to #19 for low coordinate in verified region 6847-7583 Test read # 17 ident 472426 6847- 11660 against verified region 6847- 7583 Test read # 18 ident 679081 6864- 13084 against verified region 6847- 7583 - CANDIDATE hangs -5498 -9124 - SAVED Test read # 19 ident 522935 6936- 12152 against verified region 6847- 7583 - CANDIDATE hangs -4562 -9199 Found appropriate intersecting read. createUnitigs()-- read 547485 place 2 edgeTo tig 113078 reads # 17 472426- 522935 verified 7583- 6847 position 7583- -2263 covered 0- 700 BREAK at pos 6864 read 679081 isLow 1 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 547485 place 0 edgeTo tig 32 reads # 1 547487- 641670 verified 3- 9762 position 1- 9807 covered 0- 9766 SELF EXPECTED_3' Scan reads from #8 to #97 for low coordinate in verified region 9662-17693 Test read # 8 ident 438982 3647- 13750 against verified region 9662- 17693 Test read # 9 ident 12742 3742- 10252 against verified region 9662- 17693 Test read # 14 ident 192783 4120- 14326 against verified region 9662- 17693 Test read # 15 ident 192782 4173- 12472 against verified region 9662- 17693 Test read # 16 ident 12745 4479- 10389 against verified region 9662- 17693 Test read # 17 ident 263039 4579- 12041 against verified region 9662- 17693 Test read # 18 ident 101785 4599- 10929 against verified region 9662- 17693 Test read # 19 ident 20140 4736- 11547 against verified region 9662- 17693 Test read # 20 ident 358892 5145- 13746 against verified region 9662- 17693 Test read # 21 ident 629234 5174- 14631 against verified region 9662- 17693 Test read # 23 ident 685079 5442- 11689 against verified region 9662- 17693 Test read # 24 ident 584694 5639- 13629 against verified region 9662- 17693 Test read # 25 ident 10179 5759- 11379 against verified region 9662- 17693 Test read # 26 ident 10178 5760- 11855 against verified region 9662- 17693 Test read # 27 ident 631358 5785- 12128 against verified region 9662- 17693 Test read # 28 ident 454985 5925- 13090 against verified region 9662- 17693 Test read # 29 ident 396658 6105- 12149 against verified region 9662- 17693 Test read # 30 ident 147926 6128- 13051 against verified region 9662- 17693 Test read # 32 ident 559643 6644- 10560 against verified region 9662- 17693 Test read # 33 ident 263040 6712- 12060 against verified region 9662- 17693 Test read # 35 ident 637664 6787- 15279 against verified region 9662- 17693 Test read # 36 ident 665406 7251- 15243 against verified region 9662- 17693 Test read # 37 ident 665407 7336- 15231 against verified region 9662- 17693 Test read # 38 ident 262872 7352- 16235 against verified region 9662- 17693 Test read # 40 ident 170760 7692- 11787 against verified region 9662- 17693 Test read # 41 ident 348459 7760- 11863 against verified region 9662- 17693 Test read # 42 ident 348460 7835- 14224 against verified region 9662- 17693 Test read # 43 ident 536628 8028- 14308 against verified region 9662- 17693 Test read # 44 ident 561714 8100- 14980 against verified region 9662- 17693 Test read # 46 ident 373241 8305- 16220 against verified region 9662- 17693 Test read # 47 ident 443260 8366- 17094 against verified region 9662- 17693 Test read # 48 ident 473128 8504- 12190 against verified region 9662- 17693 Test read # 49 ident 473129 8826- 11765 against verified region 9662- 17693 Test read # 50 ident 145176 8840- 17315 against verified region 9662- 17693 Test read # 51 ident 716971 8945- 13525 against verified region 9662- 17693 Test read # 52 ident 653305 9051- 12481 against verified region 9662- 17693 Test read # 53 ident 533344 9088- 14090 against verified region 9662- 17693 Test read # 54 ident 440934 9126- 12287 against verified region 9662- 17693 Test read # 55 ident 393306 9132- 12839 against verified region 9662- 17693 Test read # 56 ident 339091 9269- 12477 against verified region 9662- 17693 Test read # 57 ident 339092 9299- 15356 against verified region 9662- 17693 Test read # 58 ident 339093 9305- 15390 against verified region 9662- 17693 Test read # 59 ident 339094 9381- 15386 against verified region 9662- 17693 Test read # 60 ident 547489 9717- 12468 against verified region 9662- 17693 - CANDIDATE hangs 40 -7033 Test read # 61 ident 220650 9774- 11056 against verified region 9662- 17693 - CANDIDATE hangs 115 -8440 Test read # 62 ident 36332 9808- 12834 against verified region 9662- 17693 - CANDIDATE hangs 140 -6672 Test read # 63 ident 36330 10314- 13721 against verified region 9662- 17693 - CANDIDATE hangs 653 -5829 Test read # 64 ident 307529 10461- 14653 against verified region 9662- 17693 - CANDIDATE hangs 797 -4885 Test read # 65 ident 185854 10854- 16604 against verified region 9662- 17693 - CANDIDATE hangs 1144 -2932 Test read # 66 ident 185856 10860- 16691 against verified region 9662- 17693 - CANDIDATE hangs 1144 -2839 Test read # 67 ident 185853 10861- 16741 against verified region 9662- 17693 - CANDIDATE hangs 1148 -2798 Test read # 68 ident 185857 10865- 16604 against verified region 9662- 17693 - CANDIDATE hangs 1148 -2888 Test read # 69 ident 185859 10924- 16602 against verified region 9662- 17693 - CANDIDATE hangs 1171 -2888 Test read # 70 ident 185855 10941- 16678 against verified region 9662- 17693 - CANDIDATE hangs 1237 -2849 Test read # 71 ident 158917 10954- 13886 against verified region 9662- 17693 - CANDIDATE hangs 1279 -5624 Test read # 72 ident 177558 11020- 17693 against verified region 9662- 17693 - CANDIDATE hangs 1343 -1974 Test read # 73 ident 185858 11052- 16703 against verified region 9662- 17693 - CANDIDATE hangs 1296 -2810 Test read # 74 ident 247220 11096- 14691 against verified region 9662- 17693 - CANDIDATE hangs 1443 -4845 Test read # 75 ident 46978 11100- 12577 against verified region 9662- 17693 - CANDIDATE hangs 1425 -6929 Test read # 76 ident 307003 11433- 14146 against verified region 9662- 17693 - CANDIDATE hangs 1761 -5357 Test read # 77 ident 443261 11478- 17157 against verified region 9662- 17693 - CANDIDATE hangs 1783 -2417 Test read # 83 ident 214100 12447- 16154 against verified region 9662- 17693 - CANDIDATE hangs 2767 -3402 Test read # 84 ident 404801 12634- 15578 against verified region 9662- 17693 - CANDIDATE hangs 2954 -3967 Test read # 86 ident 2989 12697- 15496 against verified region 9662- 17693 - CANDIDATE hangs 3023 -4047 Test read # 87 ident 307004 12863- 14083 against verified region 9662- 17693 - CANDIDATE hangs 3178 -5431 Test read # 89 ident 595171 13540- 15747 against verified region 9662- 17693 - CANDIDATE hangs 3855 -3806 Test read # 90 ident 477347 13581- 15215 against verified region 9662- 17693 - CANDIDATE hangs 3893 -4321 Test read # 93 ident 310242 13886- 17059 against verified region 9662- 17693 - CANDIDATE hangs 4190 -2513 Test read # 94 ident 88348 14103- 16278 against verified region 9662- 17693 - CANDIDATE hangs 4402 -3283 Test read # 95 ident 443259 14538- 17054 against verified region 9662- 17693 - CANDIDATE hangs 4842 -2516 Test read # 97 ident 603826 14918- 15967 against verified region 9662- 17693 - CANDIDATE hangs 5205 -3600 Failed to find appropriate intersecting read. createUnitigs()-- read 547485 place 1 edgeTo tig 113066 reads # 8 438982- 603826 verified 9662- 17693 position 9662- 19526 covered 0- 7839 EXPECTED_3' NO_OVERLAPS Scan reads from #17 to #19 for high coordinate in verified region 6847-7583 Test read # 17 ident 472426 6847- 11660 against verified region 6847- 7583 Test read # 18 ident 679081 6864- 13084 against verified region 6847- 7583 Test read # 19 ident 522935 6936- 12152 against verified region 6847- 7583 Failed to find appropriate intersecting read. createUnitigs()-- read 547485 place 2 edgeTo tig 113078 reads # 17 472426- 522935 verified 7583- 6847 position 7583- -2263 covered 0- 700 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 35 len 48635 first read 114395 with 3 placements - last read 170728 with 1 placements createUnitigs()-- read 114395 place 0 edgeTo tig 35 reads # 1 365393- 419644 verified 53- 6116 position 2- 6116 covered 14- 6052 SELF EXPECTED_5' Scan reads from #0 to #0 for low coordinate in verified region 5277-6600 Test read # 0 ident 475846 0- 6600 against verified region 5277- 6600 Failed to find appropriate intersecting read. createUnitigs()-- read 114395 place 1 edgeTo tig 582436 reads # 0 475846- 475846 verified 6600- 5277 position 11396- 5277 covered 4796- 6052 EXPECTED_5' NO_OVERLAPS Scan reads from #15 to #16 for low coordinate in verified region 6814-8584 Test read # 15 ident 491077 6814- 9892 against verified region 6814- 8584 Test read # 16 ident 495553 6825- 9227 against verified region 6814- 8584 - CANDIDATE hangs -649 -4334 - SAVED Found appropriate intersecting read. createUnitigs()-- read 114395 place 2 edgeTo tig 582437 reads # 15 491077- 495553 verified 8584- 6814 position 8584- 2494 covered 0- 1736 BREAK at pos 6825 read 495553 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 170728 place 0 edgeTo tig 35 reads # 135 312663- 269582 verified 42153- 48148 position 42153- 48624 covered 0- 5992 SELF EXPECTED_3' createUnitigs()-- tig 38 len 20502 first read 291495 with 5 placements - last read 459771 with 1 placements createUnitigs()-- read 291495 place 0 edgeTo tig 38 reads # 1 720882- 720882 verified 3210- 4715 position 4- 4715 covered 3206- 4650 SELF EXPECTED_5' Scan reads from #8 to #8 for low coordinate in verified region 2712-4195 Test read # 8 ident 40536 2067- 4195 against verified region 2712- 4195 Failed to find appropriate intersecting read. createUnitigs()-- read 291495 place 1 edgeTo tig 3478 reads # 8 40536- 40536 verified 4195- 2712 position 7414- 2712 covered 3219- 4650 EXPECTED_5' NO_OVERLAPS Scan reads from #50 to #50 for high coordinate in verified region 17924-18715 Test read # 50 ident 170389 17924- 22660 against verified region 17924- 18715 Failed to find appropriate intersecting read. createUnitigs()-- read 291495 place 2 edgeTo tig 3753 reads # 50 170389- 170389 verified 17924- 18715 position 14045- 18715 covered 3879- 4650 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #61 for high coordinate in verified region 8886-12287 Test read # 3 ident 274132 696- 9460 against verified region 8886- 12287 - CANDIDATE hangs -8118 -4100 - SAVED Test read # 9 ident 12742 3742- 10252 against verified region 8886- 12287 - CANDIDATE hangs -5144 -3328 - SAVED Test read # 10 ident 12743 3748- 10377 against verified region 8886- 12287 - CANDIDATE hangs -5138 -3202 - SAVED Test read # 16 ident 12745 4479- 10389 against verified region 8886- 12287 - CANDIDATE hangs -4435 -3202 - SAVED Test read # 17 ident 263039 4579- 12041 against verified region 8886- 12287 - CANDIDATE hangs -4296 -1542 - SAVED Test read # 18 ident 101785 4599- 10929 against verified region 8886- 12287 - CANDIDATE hangs -4264 -2645 Test read # 19 ident 20140 4736- 11547 against verified region 8886- 12287 - CANDIDATE hangs -4185 -2059 Test read # 23 ident 685079 5442- 11689 against verified region 8886- 12287 - CANDIDATE hangs -3413 -1878 Test read # 25 ident 10179 5759- 11379 against verified region 8886- 12287 - CANDIDATE hangs -3123 -2216 Test read # 26 ident 10178 5760- 11855 against verified region 8886- 12287 - CANDIDATE hangs -3115 -1717 Test read # 27 ident 631358 5785- 12128 against verified region 8886- 12287 - CANDIDATE hangs -3077 -1455 - SAVED Test read # 29 ident 396658 6105- 12149 against verified region 8886- 12287 - CANDIDATE hangs -2779 -1437 - SAVED Test read # 32 ident 559643 6644- 10560 against verified region 8886- 12287 - CANDIDATE hangs -2239 -3011 Test read # 33 ident 263040 6712- 12060 against verified region 8886- 12287 - CANDIDATE hangs -2172 -1522 Test read # 39 ident 12741 7574- 10355 against verified region 8886- 12287 - CANDIDATE hangs -1307 -3213 Test read # 40 ident 170760 7692- 11787 against verified region 8886- 12287 - CANDIDATE hangs -1215 -1783 Test read # 41 ident 348459 7760- 11863 against verified region 8886- 12287 - CANDIDATE hangs -1143 -1710 Test read # 48 ident 473128 8504- 12190 against verified region 8886- 12287 - CANDIDATE hangs -400 -1393 - SAVED Test read # 49 ident 473129 8826- 11765 against verified region 8886- 12287 - CANDIDATE hangs -86 -1816 Test read # 54 ident 440934 9126- 12287 against verified region 8886- 12287 Test read # 61 ident 220650 9774- 11056 against verified region 8886- 12287 - CANDIDATE hangs 856 -2533 Found appropriate intersecting read. createUnitigs()-- read 291495 place 3 edgeTo tig 113066 reads # 3 274132- 220650 verified 8886- 12287 position 8886- 13580 covered 0- 3338 BREAK at pos 12190 read 473128 isLow 0 sim 1.0000 Scan reads from #17 to #22 for low coordinate in verified region 6847-8334 Test read # 17 ident 472426 6847- 11660 against verified region 6847- 8334 Test read # 18 ident 679081 6864- 13084 against verified region 6847- 8334 - CANDIDATE hangs -4744 -3215 - SAVED Test read # 19 ident 522935 6936- 12152 against verified region 6847- 8334 - CANDIDATE hangs -3807 -3291 Test read # 20 ident 69291 7509- 11719 against verified region 6847- 8334 - CANDIDATE hangs -3361 -3857 Test read # 21 ident 313827 7601- 11270 against verified region 6847- 8334 - CANDIDATE hangs -2964 -3967 Test read # 22 ident 649344 7648- 11261 against verified region 6847- 8334 - CANDIDATE hangs -2933 -4005 Found appropriate intersecting read. createUnitigs()-- read 291495 place 4 edgeTo tig 113078 reads # 17 472426- 649344 verified 8334- 6847 position 8334- 3644 covered 0- 1446 BREAK at pos 6864 read 679081 isLow 1 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 459771 place 0 edgeTo tig 38 reads # 10 106337- 459768 verified 14016- 18952 position 14016- 20500 covered 0- 4849 SELF EXPECTED_3' createUnitigs()-- tig 41 len 11079 first read 536216 with 4 placements - last read 92087 with 3 placements createUnitigs()-- read 536216 place 0 edgeTo tig 41 reads # 1 536217- 195382 verified 3- 9867 position 0- 9867 covered 2- 9856 SELF EXPECTED_5' Scan reads from #1 to #19 for low coordinate in verified region 5062-8196 Test read # 1 ident 642490 13- 8196 against verified region 5062- 8196 Test read # 2 ident 642493 16- 7130 against verified region 5062- 8196 Test read # 4 ident 335385 550- 7744 against verified region 5062- 8196 Test read # 5 ident 335383 564- 7780 against verified region 5062- 8196 Test read # 6 ident 335384 754- 7750 against verified region 5062- 8196 Test read # 8 ident 377508 1627- 7202 against verified region 5062- 8196 Test read # 14 ident 502919 4057- 7672 against verified region 5062- 8196 Test read # 15 ident 632851 4171- 6998 against verified region 5062- 8196 Test read # 16 ident 18275 4193- 6025 against verified region 5062- 8196 Test read # 17 ident 108765 4620- 5989 against verified region 5062- 8196 Test read # 18 ident 679571 4818- 6863 against verified region 5062- 8196 Test read # 19 ident 707900 4887- 8136 against verified region 5062- 8196 Failed to find appropriate intersecting read. createUnitigs()-- read 536216 place 1 edgeTo tig 44 reads # 1 642490- 707900 verified 8196- 5062 position 14980- 5062 covered 6791- 9856 EXPECTED_5' NO_OVERLAPS Scan reads from #7 to #7 for high coordinate in verified region 5423-6706 Test read # 7 ident 78154 5106- 6706 against verified region 5423- 6706 Failed to find appropriate intersecting read. createUnitigs()-- read 536216 place 2 edgeTo tig 21237 reads # 7 78154- 78154 verified 5423- 6706 position 5423- 15296 covered 0- 1266 NO_OVERLAPS Scan reads from #2 to #63 for low coordinate in verified region 8147-13594 Test read # 2 ident 349571 373- 9200 against verified region 8147- 13594 Test read # 5 ident 139209 980- 10619 against verified region 8147- 13594 Test read # 10 ident 349572 1842- 9202 against verified region 8147- 13594 Test read # 24 ident 236407 3369- 8766 against verified region 8147- 13594 Test read # 27 ident 377191 3910- 11711 against verified region 8147- 13594 Test read # 32 ident 466819 6928- 13003 against verified region 8147- 13594 Test read # 33 ident 408911 6933- 12859 against verified region 8147- 13594 Test read # 36 ident 466820 7443- 12999 against verified region 8147- 13594 Test read # 37 ident 171125 7565- 12996 against verified region 8147- 13594 Test read # 38 ident 355546 7702- 12639 against verified region 8147- 13594 Test read # 39 ident 337290 7872- 12313 against verified region 8147- 13594 Test read # 40 ident 571216 8106- 13586 against verified region 8147- 13594 Test read # 41 ident 571215 8107- 13593 against verified region 8147- 13594 Test read # 42 ident 571214 8130- 13587 against verified region 8147- 13594 Test read # 43 ident 46797 8233- 13585 against verified region 8147- 13594 - CANDIDATE hangs 4649 -70 Test read # 44 ident 46798 8235- 13594 against verified region 8147- 13594 - CANDIDATE hangs 4610 -71 Test read # 45 ident 401046 8505- 12998 against verified region 8147- 13594 - CANDIDATE hangs 5100 -349 Test read # 46 ident 337292 8548- 13292 against verified region 8147- 13594 - CANDIDATE hangs 4871 -391 Test read # 48 ident 333185 8895- 11758 against verified region 8147- 13594 - CANDIDATE hangs 6316 -733 Test read # 50 ident 213589 9000- 11680 against verified region 8147- 13594 - CANDIDATE hangs 6399 -855 Test read # 59 ident 401047 10566- 12779 against verified region 8147- 13594 - CANDIDATE hangs 5313 -2380 Test read # 60 ident 571213 10660- 12977 against verified region 8147- 13594 - CANDIDATE hangs 5128 -2494 Test read # 63 ident 88508 10998- 12892 against verified region 8147- 13594 - CANDIDATE hangs 5206 -2807 Failed to find appropriate intersecting read. createUnitigs()-- read 536216 place 3 edgeTo tig 113052 reads # 2 349571- 88508 verified 13594- 8147 position 18111- 8147 covered 4603- 9856 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 92087 place 0 edgeTo tig 41 reads # 0 536216- 195382 verified 10912- 3033 position 11077- 3033 covered 162- 8038 SELF EXPECTED_5' Scan reads from #1 to #20 for high coordinate in verified region 3855-8196 Test read # 1 ident 642490 13- 8196 against verified region 3855- 8196 Test read # 2 ident 642493 16- 7130 against verified region 3855- 8196 - CANDIDATE hangs -3813 -4815 - SAVED Test read # 4 ident 335385 550- 7744 against verified region 3855- 8196 - CANDIDATE hangs -3284 -4214 - SAVED Test read # 5 ident 335383 564- 7780 against verified region 3855- 8196 - CANDIDATE hangs -3267 -4191 - SAVED Test read # 6 ident 335384 754- 7750 against verified region 3855- 8196 - CANDIDATE hangs -3080 -4207 Test read # 8 ident 377508 1627- 7202 against verified region 3855- 8196 - CANDIDATE hangs -2208 -4760 Test read # 9 ident 368942 1702- 4899 against verified region 3855- 8196 - CANDIDATE hangs -2148 -7025 Test read # 13 ident 35904 4003- 6280 against verified region 3855- 8196 - CANDIDATE hangs 139 -5661 Test read # 14 ident 502919 4057- 7672 against verified region 3855- 8196 - CANDIDATE hangs 184 -4258 Test read # 15 ident 632851 4171- 6998 against verified region 3855- 8196 - CANDIDATE hangs 298 -4942 Test read # 16 ident 18275 4193- 6025 against verified region 3855- 8196 - CANDIDATE hangs 327 -5921 Test read # 17 ident 108765 4620- 5989 against verified region 3855- 8196 - CANDIDATE hangs 756 -5954 Test read # 18 ident 679571 4818- 6863 against verified region 3855- 8196 - CANDIDATE hangs 947 -5079 Test read # 19 ident 707900 4887- 8136 against verified region 3855- 8196 - CANDIDATE hangs 1015 -3826 Test read # 20 ident 196633 6269- 7374 against verified region 3855- 8196 - CANDIDATE hangs 2362 -4566 Found appropriate intersecting read. createUnitigs()-- read 92087 place 1 edgeTo tig 44 reads # 1 642490- 196633 verified 3855- 8196 position 3855- 11947 covered 0- 4276 BREAK at pos 7780 read 335383 isLow 0 sim 1.0000 Scan reads from #1 to #63 for high coordinate in verified region 6925-13714 Test read # 1 ident 472016 98- 8603 against verified region 6925- 13714 - CANDIDATE hangs -6757 -6373 - SAVED Test read # 2 ident 349571 373- 9200 against verified region 6925- 13714 - CANDIDATE hangs -6486 -5791 - SAVED Test read # 5 ident 139209 980- 10619 against verified region 6925- 13714 - CANDIDATE hangs -5888 -4388 - SAVED Test read # 10 ident 349572 1842- 9202 against verified region 6925- 13714 - CANDIDATE hangs -5026 -5780 Test read # 16 ident 78375 2218- 8320 against verified region 6925- 13714 - CANDIDATE hangs -4657 -6670 Test read # 20 ident 588038 2656- 8132 against verified region 6925- 13714 - CANDIDATE hangs -4236 -6851 Test read # 23 ident 101562 2849- 7703 against verified region 6925- 13714 - CANDIDATE hangs -4047 -7282 Test read # 24 ident 236407 3369- 8766 against verified region 6925- 13714 - CANDIDATE hangs -3558 -6259 Test read # 27 ident 377191 3910- 11711 against verified region 6925- 13714 - CANDIDATE hangs -2995 -3332 - SAVED Test read # 28 ident 148910 3959- 8017 against verified region 6925- 13714 - CANDIDATE hangs -2938 -6963 Test read # 32 ident 466819 6928- 13003 against verified region 6925- 13714 - CANDIDATE hangs -2 -2065 Test read # 33 ident 408911 6933- 12859 against verified region 6925- 13714 - CANDIDATE hangs -1 -2207 Test read # 34 ident 608489 6936- 13714 against verified region 6925- 13714 Test read # 36 ident 466820 7443- 12999 against verified region 6925- 13714 - CANDIDATE hangs 501 -2066 Test read # 37 ident 171125 7565- 12996 against verified region 6925- 13714 - CANDIDATE hangs 631 -2075 Test read # 38 ident 355546 7702- 12639 against verified region 6925- 13714 - CANDIDATE hangs 745 -2413 Test read # 39 ident 337290 7872- 12313 against verified region 6925- 13714 - CANDIDATE hangs 934 -2734 Test read # 40 ident 571216 8106- 13586 against verified region 6925- 13714 - CANDIDATE hangs 1156 -1594 Test read # 41 ident 571215 8107- 13593 against verified region 6925- 13714 - CANDIDATE hangs 1162 -1636 Test read # 42 ident 571214 8130- 13587 against verified region 6925- 13714 - CANDIDATE hangs 1185 -1605 Test read # 43 ident 46797 8233- 13585 against verified region 6925- 13714 - CANDIDATE hangs 1280 -1582 Test read # 44 ident 46798 8235- 13594 against verified region 6925- 13714 - CANDIDATE hangs 1281 -1582 Test read # 45 ident 401046 8505- 12998 against verified region 6925- 13714 - CANDIDATE hangs 1559 -2069 Test read # 46 ident 337292 8548- 13292 against verified region 6925- 13714 - CANDIDATE hangs 1601 -1842 Test read # 48 ident 333185 8895- 11758 against verified region 6925- 13714 - CANDIDATE hangs 1944 -3284 Test read # 50 ident 213589 9000- 11680 against verified region 6925- 13714 - CANDIDATE hangs 2066 -3367 Test read # 59 ident 401047 10566- 12779 against verified region 6925- 13714 - CANDIDATE hangs 3591 -2282 Test read # 60 ident 571213 10660- 12977 against verified region 6925- 13714 - CANDIDATE hangs 3705 -2097 Test read # 63 ident 88508 10998- 12892 against verified region 6925- 13714 - CANDIDATE hangs 4018 -2174 Found appropriate intersecting read. createUnitigs()-- read 92087 place 2 edgeTo tig 113052 reads # 1 472016- 88508 verified 6925- 13714 position 6925- 15067 covered 0- 6563 BREAK at pos 11711 read 377191 isLow 0 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 44 len 13160 first read 642492 with 3 placements - last read 623351 with 4 placements createUnitigs()-- read 642492 place 0 edgeTo tig 44 reads # 1 642490- 623352 verified 10286- 21 position 10286- 21 covered 0- 10216 SELF EXPECTED_3' Scan reads from #37 to #61 for high coordinate in verified region 25546-27575 Test read # 37 ident 588983 17317- 26374 against verified region 25546- 27575 - CANDIDATE hangs 9498 8271 - SAVED Test read # 38 ident 588982 17345- 26364 against verified region 25546- 27575 - CANDIDATE hangs 9504 8240 Test read # 39 ident 588981 17345- 26304 against verified region 25546- 27575 - CANDIDATE hangs 9558 8232 Test read # 40 ident 588980 17354- 26366 against verified region 25546- 27575 - CANDIDATE hangs 9501 8230 Test read # 41 ident 21084 19264- 26688 against verified region 25546- 27575 - CANDIDATE hangs 9159 6253 - SAVED Test read # 42 ident 21080 19265- 26701 against verified region 25546- 27575 - CANDIDATE hangs 9148 6249 - SAVED Test read # 43 ident 21082 19274- 26699 against verified region 25546- 27575 - CANDIDATE hangs 9148 6238 Test read # 44 ident 21081 19281- 26707 against verified region 25546- 27575 - CANDIDATE hangs 9141 6235 - SAVED Test read # 45 ident 21083 19321- 26698 against verified region 25546- 27575 - CANDIDATE hangs 9148 6190 Test read # 47 ident 21085 19554- 26707 against verified region 25546- 27575 - CANDIDATE hangs 9140 5955 Test read # 48 ident 613968 19759- 27069 against verified region 25546- 27575 - CANDIDATE hangs 8778 5768 - SAVED Test read # 49 ident 412272 19958- 27146 against verified region 25546- 27575 - CANDIDATE hangs 8699 5581 - SAVED Test read # 50 ident 300762 20016- 26714 against verified region 25546- 27575 - CANDIDATE hangs 9141 5533 Test read # 52 ident 64196 20457- 27099 against verified region 25546- 27575 - CANDIDATE hangs 8742 5068 Test read # 53 ident 543964 20606- 26805 against verified region 25546- 27575 - CANDIDATE hangs 9052 4935 Test read # 54 ident 588984 20794- 26353 against verified region 25546- 27575 - CANDIDATE hangs 9498 4756 Test read # 58 ident 207932 22176- 27566 against verified region 25546- 27575 - CANDIDATE hangs 8279 3402 - SAVED Test read # 59 ident 207931 22181- 27564 against verified region 25546- 27575 - CANDIDATE hangs 8280 3380 Test read # 60 ident 207930 22183- 27575 against verified region 25546- 27575 Test read # 61 ident 207933 22202- 27575 against verified region 25546- 27575 Found appropriate intersecting read. createUnitigs()-- read 642492 place 1 edgeTo tig 113051 reads # 37 588983- 207933 verified 27575- 25546 position 35851- 25546 covered 8274- 10223 BREAK at pos 27566 read 207932 isLow 0 sim 0.9956 Scan reads from #0 to #28 for high coordinate in verified region 3050-11711 Test read # 0 ident 543965 0- 4255 against verified region 3050- 11711 - CANDIDATE hangs 9054 3013 - SAVED Test read # 1 ident 472016 98- 8603 against verified region 3050- 11711 - CANDIDATE hangs 4725 2940 - SAVED Test read # 2 ident 349571 373- 9200 against verified region 3050- 11711 - CANDIDATE hangs 4145 2658 - SAVED Test read # 3 ident 42668 832- 7126 against verified region 3050- 11711 - CANDIDATE hangs 6197 2209 Test read # 5 ident 139209 980- 10619 against verified region 3050- 11711 - CANDIDATE hangs 2737 2066 - SAVED Test read # 6 ident 331803 1016- 5585 against verified region 3050- 11711 - CANDIDATE hangs 7718 2018 Test read # 7 ident 131223 1116- 6855 against verified region 3050- 11711 - CANDIDATE hangs 6471 1914 Test read # 9 ident 207934 1658- 4972 against verified region 3050- 11711 - CANDIDATE hangs 8334 1396 Test read # 10 ident 349572 1842- 9202 against verified region 3050- 11711 - CANDIDATE hangs 4134 1203 Test read # 11 ident 269433 2051- 6919 against verified region 3050- 11711 - CANDIDATE hangs 6416 993 Test read # 12 ident 269432 2052- 6945 against verified region 3050- 11711 - CANDIDATE hangs 6393 999 Test read # 13 ident 578827 2151- 5643 against verified region 3050- 11711 - CANDIDATE hangs 7643 898 Test read # 14 ident 261402 2198- 5661 against verified region 3050- 11711 - CANDIDATE hangs 7662 839 Test read # 15 ident 269430 2214- 6300 against verified region 3050- 11711 - CANDIDATE hangs 7058 840 Test read # 16 ident 78375 2218- 8320 against verified region 3050- 11711 - CANDIDATE hangs 5023 835 Test read # 17 ident 601757 2444- 6799 against verified region 3050- 11711 - CANDIDATE hangs 6504 605 Test read # 18 ident 7959 2506- 6294 against verified region 3050- 11711 - CANDIDATE hangs 7039 560 Test read # 19 ident 433803 2625- 6012 against verified region 3050- 11711 - CANDIDATE hangs 7306 430 Test read # 20 ident 588038 2656- 8132 against verified region 3050- 11711 - CANDIDATE hangs 5203 404 Test read # 21 ident 207929 2827- 4924 against verified region 3050- 11711 - CANDIDATE hangs 8373 234 Test read # 22 ident 257668 2838- 6336 against verified region 3050- 11711 - CANDIDATE hangs 6991 224 Test read # 23 ident 101562 2849- 7703 against verified region 3050- 11711 - CANDIDATE hangs 5634 212 Test read # 24 ident 236407 3369- 8766 against verified region 3050- 11711 - CANDIDATE hangs 4611 -345 Test read # 25 ident 42667 3393- 7125 against verified region 3050- 11711 - CANDIDATE hangs 6195 -326 Test read # 26 ident 434349 3540- 6356 against verified region 3050- 11711 - CANDIDATE hangs 6973 -474 Test read # 27 ident 377191 3910- 11711 against verified region 3050- 11711 Test read # 28 ident 148910 3959- 8017 against verified region 3050- 11711 - CANDIDATE hangs 5314 -872 Found appropriate intersecting read. createUnitigs()-- read 642492 place 2 edgeTo tig 113052 reads # 0 543965- 148910 verified 11711- 3050 position 13331- 3050 covered 1715- 10223 BREAK at pos 10619 read 139209 isLow 0 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. Scan reads from #3 to #3 for high coordinate in verified region 10202-11329 Test read # 3 ident 626321 1536- 11329 against verified region 10202- 11329 Failed to find appropriate intersecting read. createUnitigs()-- read 623351 place 0 edgeTo tig 24 reads # 3 626321- 626321 verified 11329- 10202 position 16067- 10202 covered 4738- 5829 NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 623351 place 1 edgeTo tig 44 reads # 0 642492- 623352 verified 7277- 13118 position 7277- 13156 covered 0- 5797 SELF EXPECTED_3' Scan reads from #75 to #75 for low coordinate in verified region 13750-16331 Test read # 75 ident 515130 13750- 16331 against verified region 13750- 16331 Failed to find appropriate intersecting read. createUnitigs()-- read 623351 place 2 edgeTo tig 113052 reads # 75 515130- 515130 verified 13750- 16331 position 11879- 17745 covered 1871- 4415 EXPECTED_3' NO_OVERLAPS Scan reads from #5 to #12 for low coordinate in verified region 3610-8984 Test read # 5 ident 49604 3610- 9808 against verified region 3610- 8984 Test read # 6 ident 443924 4287- 15420 against verified region 3610- 8984 - CANDIDATE hangs 1215 6453 - SAVED Test read # 7 ident 49603 4792- 9871 against verified region 3610- 8984 - CANDIDATE hangs 1801 1022 Test read # 8 ident 252832 4919- 14030 against verified region 3610- 8984 - CANDIDATE hangs 1864 5053 Test read # 9 ident 563812 7853- 14710 against verified region 3610- 8984 - CANDIDATE hangs 4740 5727 Test read # 10 ident 414711 7871- 14779 against verified region 3610- 8984 - CANDIDATE hangs 4690 5702 Test read # 11 ident 384231 8453- 18793 against verified region 3610- 8984 - CANDIDATE hangs 5260 9680 Test read # 12 ident 384232 8474- 18882 against verified region 3610- 8984 - CANDIDATE hangs 5277 9775 Found appropriate intersecting read. createUnitigs()-- read 623351 place 3 edgeTo tig 113053 reads # 5 49604- 384232 verified 3610- 8984 position 3085- 8984 covered 727- 5829 BREAK at pos 4287 read 443924 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 45 len 14607 first read 648663 with 12 placements - last read 65518 with 24 placements createUnitigs()-- read 648663 place 0 edgeTo tig 45 reads # 10 444100- 228398 verified 438- 1885 position -6806- 1885 covered 7330- 8593 SELF EXPECTED_5' createUnitigs()-- read 648663 place 1 edgeTo tig 45 reads # 1 54713- 566813 verified 276- 8900 position 214- 8900 covered 0- 8593 SELF Scan reads from #172 to #190 for high coordinate in verified region 10120-14607 Test read # 172 ident 644067 9186- 14588 against verified region 10120- 14607 - CANDIDATE hangs -835 -4118 - SAVED Test read # 173 ident 452460 9209- 11747 against verified region 10120- 14607 - CANDIDATE hangs -720 -6798 Test read # 183 ident 312949 9902- 12492 against verified region 10120- 14607 - CANDIDATE hangs -714 -6733 Test read # 186 ident 589268 10359- 11755 against verified region 10120- 14607 - CANDIDATE hangs 685 -6524 Test read # 189 ident 65518 10486- 14607 against verified region 10120- 14607 Test read # 190 ident 640923 11550- 13422 against verified region 10120- 14607 - CANDIDATE hangs 1352 -5417 Found appropriate intersecting read. createUnitigs()-- read 648663 place 2 edgeTo tig 45 reads # 172 644067- 640923 verified 10120- 14607 position 10120- 18754 covered 0- 4475 BREAK at pos 14588 read 644067 isLow 0 sim 1.0000 Scan reads from #4 to #13 for high coordinate in verified region 2587-3518 Test read # 4 ident 258770 2587- 8425 against verified region 2587- 3518 Test read # 5 ident 258763 2589- 8421 against verified region 2587- 3518 Test read # 6 ident 258768 2596- 8432 against verified region 2587- 3518 Test read # 7 ident 258765 2677- 8435 against verified region 2587- 3518 Test read # 8 ident 258769 2796- 8586 against verified region 2587- 3518 Test read # 9 ident 258766 2799- 8628 against verified region 2587- 3518 Test read # 10 ident 258767 2800- 8507 against verified region 2587- 3518 Test read # 11 ident 235973 2806- 8513 against verified region 2587- 3518 Test read # 12 ident 258764 2997- 8834 against verified region 2587- 3518 Test read # 13 ident 396320 4224- 5457 against verified region 2587- 3518 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 3 edgeTo tig 12277 reads # 4 258770- 396320 verified 2587- 3518 position -5111- 3518 covered 8017- 8593 EXPECTED_5' NO_OVERLAPS Scan reads from #7 to #7 for high coordinate in verified region 2677-6235 Test read # 7 ident 258765 2677- 8435 against verified region 2677- 6235 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 4 edgeTo tig 12277 reads # 7 258765- 258765 verified 2677- 6235 position -2468- 6235 covered 5145- 8593 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #132 to #132 for high coordinate in verified region 19880-21755 Test read # 132 ident 683374 15248- 21755 against verified region 19880- 21755 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 5 edgeTo tig 113073 reads # 132 683374- 683374 verified 19880- 21755 position 19880- 28501 covered 0- 1847 NO_OVERLAPS Scan reads from #142 to #142 for high coordinate in verified region 23537-25193 Test read # 142 ident 136713 17488- 25193 against verified region 23537- 25193 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 6 edgeTo tig 113073 reads # 142 136713- 136713 verified 23537- 25193 position 23537- 32165 covered 0- 1621 NO_OVERLAPS Scan reads from #17 to #17 for low coordinate in verified region 2382-4162 Test read # 17 ident 247105 2382- 6646 against verified region 2382- 4162 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 7 edgeTo tig 113132 reads # 17 247105- 247105 verified 4162- 2382 position 4162- -4438 covered 0- 1773 NO_OVERLAPS Scan reads from #0 to #1 for high coordinate in verified region 0-773 Test read # 0 ident 38311 0- 7866 against verified region 0- 773 Test read # 1 ident 286039 175- 10040 against verified region 0- 773 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 8 edgeTo tig 113234 reads # 0 38311- 286039 verified 0- 773 position -7893- 773 covered 7897- 8593 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #9 to #9 for high coordinate in verified region 1699-2520 Test read # 9 ident 575824 1699- 11611 against verified region 1699- 2520 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 9 edgeTo tig 113234 reads # 9 575824- 575824 verified 1699- 2520 position -6175- 2520 covered 7874- 8593 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #30 for high coordinate in verified region 626-7948 Test read # 2 ident 335370 626- 7460 against verified region 626- 7948 - CANDIDATE hangs 1907 157 Test read # 3 ident 611731 816- 8907 against verified region 626- 7948 Test read # 4 ident 574774 996- 6270 against verified region 626- 7948 - CANDIDATE hangs 3070 -450 Test read # 5 ident 361621 1010- 4628 against verified region 626- 7948 - CANDIDATE hangs 2287 -2814 Test read # 6 ident 187452 1321- 4607 against verified region 626- 7948 - CANDIDATE hangs 3008 -2434 Test read # 7 ident 40420 1389- 5152 against verified region 626- 7948 - CANDIDATE hangs 2457 -2502 Test read # 8 ident 68274 1512- 4848 against verified region 626- 7948 - CANDIDATE hangs 2370 -2999 Test read # 9 ident 575824 1699- 11611 against verified region 626- 7948 Test read # 12 ident 211778 2058- 5764 against verified region 626- 7948 - CANDIDATE hangs 3309 -1698 Test read # 13 ident 570110 2435- 9305 against verified region 626- 7948 Test read # 14 ident 529151 2869- 7704 against verified region 626- 7948 - CANDIDATE hangs 3331 -576 Test read # 15 ident 570111 2950- 7349 against verified region 626- 7948 - CANDIDATE hangs 4323 66 Test read # 16 ident 374262 3019- 9584 against verified region 626- 7948 Test read # 17 ident 538606 3115- 8067 against verified region 626- 7948 Test read # 18 ident 67728 3306- 9824 against verified region 626- 7948 Test read # 19 ident 501851 3532- 6133 against verified region 626- 7948 - CANDIDATE hangs 2001 -4026 Test read # 20 ident 246821 4013- 12633 against verified region 626- 7948 Test read # 21 ident 633153 4103- 11114 against verified region 626- 7948 Test read # 22 ident 378882 4232- 7000 against verified region 626- 7948 - CANDIDATE hangs 1923 -3924 Test read # 23 ident 550168 4260- 7186 against verified region 626- 7948 - CANDIDATE hangs 4864 -832 Test read # 24 ident 441367 4450- 12306 against verified region 626- 7948 Test read # 25 ident 332529 4638- 7386 against verified region 626- 7948 - CANDIDATE hangs 7802 1932 Test read # 26 ident 104809 4918- 7660 against verified region 626- 7948 - CANDIDATE hangs 5041 -829 Test read # 27 ident 275687 5610- 14464 against verified region 626- 7948 Test read # 28 ident 466897 6166- 14963 against verified region 626- 7948 Test read # 29 ident 408133 7178- 12696 against verified region 626- 7948 Test read # 30 ident 75262 7959- 12896 against verified region 626- 7948 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 10 edgeTo tig 113234 reads # 2 335370- 75262 verified 626- 7948 position -710- 7948 covered 1887- 8593 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 0-782 Test read # 0 ident 111422 0- 10329 against verified region 0- 782 Failed to find appropriate intersecting read. createUnitigs()-- read 648663 place 11 edgeTo tig 113235 reads # 0 111422- 111422 verified 0- 782 position -7839- 782 covered 7839- 8593 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #0 to #66 for low coordinate in verified region 1001-5163 Test read # 0 ident 648663 0- 8717 against verified region 1001- 5163 Test read # 4 ident 448696 276- 8273 against verified region 1001- 5163 Test read # 23 ident 54717 1239- 9064 against verified region 1001- 5163 - CANDIDATE hangs 390 4050 - SAVED Test read # 32 ident 446876 1865- 8957 against verified region 1001- 5163 - CANDIDATE hangs 641 3566 Test read # 45 ident 189901 2273- 11076 against verified region 1001- 5163 - CANDIDATE hangs 672 5272 Test read # 62 ident 633154 3152- 8598 against verified region 1001- 5163 - CANDIDATE hangs 2235 3539 Test read # 66 ident 191483 3289- 6654 against verified region 1001- 5163 - CANDIDATE hangs 1409 652 Found appropriate intersecting read. createUnitigs()-- read 65518 place 0 edgeTo tig 45 reads # 0 648663- 191483 verified 1001- 5163 position 1001- 5163 covered 0- 4069 BREAK at pos 1239 read 54717 isLow 1 sim 1.0000 Scan reads from #88 to #103 for low coordinate in verified region 4366-7021 Test read # 88 ident 452046 4366- 12135 against verified region 4366- 7021 Test read # 96 ident 595807 4567- 7553 against verified region 4366- 7021 - CANDIDATE hangs 1725 592 - SAVED Test read # 103 ident 66953 4724- 7768 against verified region 4366- 7021 - CANDIDATE hangs 1689 609 Found appropriate intersecting read. createUnitigs()-- read 65518 place 1 edgeTo tig 45 reads # 88 452046- 66953 verified 4366- 7021 position 2871- 7021 covered 1628- 4069 BREAK at pos 4567 read 595807 isLow 1 sim 1.0000 Scan reads from #119 to #136 for low coordinate in verified region 5263-7995 Test read # 119 ident 595656 5263- 8448 against verified region 5263- 7995 Test read # 122 ident 698744 5404- 11996 against verified region 5263- 7995 - CANDIDATE hangs 512 2917 - SAVED Test read # 123 ident 586137 5499- 7716 against verified region 5263- 7995 - CANDIDATE hangs -1048 -2942 Test read # 125 ident 1780 5510- 7655 against verified region 5263- 7995 - CANDIDATE hangs 1700 -248 Test read # 130 ident 698743 5631- 12222 against verified region 5263- 7995 - CANDIDATE hangs 512 2919 Test read # 131 ident 316505 5656- 8700 against verified region 5263- 7995 - CANDIDATE hangs 1646 602 Test read # 132 ident 698747 5671- 12245 against verified region 5263- 7995 - CANDIDATE hangs 514 2903 Test read # 133 ident 698748 5683- 11888 against verified region 5263- 7995 - CANDIDATE hangs 513 2552 Test read # 135 ident 147007 5738- 8486 against verified region 5263- 7995 - CANDIDATE hangs 1719 384 Test read # 136 ident 65519 5758- 8019 against verified region 5263- 7995 - CANDIDATE hangs 1808 -17 Found appropriate intersecting read. createUnitigs()-- read 65518 place 2 edgeTo tig 45 reads # 119 595656- 65519 verified 5263- 7995 position 3904- 7995 covered 1530- 4069 BREAK at pos 5404 read 698744 isLow 1 sim 1.0000 Scan reads from #122 to #149 for low coordinate in verified region 5404-9240 Test read # 122 ident 698744 5404- 11996 against verified region 5404- 9240 Test read # 123 ident 586137 5499- 7716 against verified region 5404- 9240 - CANDIDATE hangs -1048 -2942 Test read # 125 ident 1780 5510- 7655 against verified region 5404- 9240 - CANDIDATE hangs 1700 -248 Test read # 130 ident 698743 5631- 12222 against verified region 5404- 9240 - CANDIDATE hangs 512 2919 - SAVED Test read # 131 ident 316505 5656- 8700 against verified region 5404- 9240 - CANDIDATE hangs 1646 602 Test read # 132 ident 698747 5671- 12245 against verified region 5404- 9240 - CANDIDATE hangs 514 2903 Test read # 133 ident 698748 5683- 11888 against verified region 5404- 9240 - CANDIDATE hangs 513 2552 Test read # 135 ident 147007 5738- 8486 against verified region 5404- 9240 - CANDIDATE hangs 1719 384 Test read # 136 ident 65519 5758- 8019 against verified region 5404- 9240 - CANDIDATE hangs 1808 -17 Test read # 138 ident 698745 5932- 12525 against verified region 5404- 9240 - CANDIDATE hangs 513 2923 Test read # 139 ident 698749 5968- 12572 against verified region 5404- 9240 - CANDIDATE hangs 512 2926 Test read # 141 ident 698746 6264- 12870 against verified region 5404- 9240 - CANDIDATE hangs 513 2931 Test read # 142 ident 10721 6297- 10890 against verified region 5404- 9240 - CANDIDATE hangs 1692 2150 Test read # 144 ident 635073 6379- 12191 against verified region 5404- 9240 - CANDIDATE hangs 1696 3337 Test read # 146 ident 197864 6523- 7792 against verified region 5404- 9240 - CANDIDATE hangs 1629 -1194 Test read # 147 ident 312946 6566- 12706 against verified region 5404- 9240 - CANDIDATE hangs -5082 -3153 Test read # 148 ident 527540 6594- 7932 against verified region 5404- 9240 - CANDIDATE hangs 1694 -1064 Test read # 149 ident 275030 6661- 7686 against verified region 5404- 9240 - CANDIDATE hangs 1686 -1382 Found appropriate intersecting read. createUnitigs()-- read 65518 place 3 edgeTo tig 45 reads # 122 698744- 275030 verified 5404- 9240 position 5085- 9240 covered 512- 4069 BREAK at pos 5631 read 698743 isLow 1 sim 1.0000 Scan reads from #123 to #123 for low coordinate in verified region 6547-7716 Test read # 123 ident 586137 5499- 7716 against verified region 6547- 7716 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 4 edgeTo tig 45 reads # 123 586137- 586137 verified 6547- 7716 position 6547- 10658 covered 0- 1127 EXPECTED_3' NO_OVERLAPS Scan reads from #86 to #86 for low coordinate in verified region 7980-9762 Test read # 86 ident 187391 4320- 9762 against verified region 7980- 9762 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 5 edgeTo tig 45 reads # 86 187391- 187391 verified 7980- 9762 position 7980- 12155 covered 0- 1676 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 65518 place 6 edgeTo tig 45 reads # 163 408825- 408825 verified 9186- 10529 position 9186- 13330 covered 0- 1268 SELF EXPECTED_3' createUnitigs()-- read 65518 place 7 edgeTo tig 45 reads # 164 312944- 452463 verified 10274- 14369 position 10274- 14397 covered 0- 4069 SELF createUnitigs()-- read 65518 place 8 edgeTo tig 45 reads # 147 312946- 312945 verified 11778- 12965 position 11778- 15987 covered 0- 918 SELF EXPECTED_3' Scan reads from #0 to #7 for low coordinate in verified region 2701-4172 Test read # 0 ident 27206 0- 4172 against verified region 2701- 4172 Test read # 1 ident 48267 7- 4129 against verified region 2701- 4172 Test read # 4 ident 559461 313- 3927 against verified region 2701- 4172 Test read # 7 ident 48268 764- 4160 against verified region 2701- 4172 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 9 edgeTo tig 7193 reads # 0 27206- 48268 verified 2701- 4172 position 2701- 6778 covered 0- 1463 EXPECTED_3' NO_OVERLAPS Scan reads from #125 to #125 for low coordinate in verified region 14922-16604 Test read # 125 ident 674185 12442- 16604 against verified region 14922- 16604 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 10 edgeTo tig 113073 reads # 125 674185- 674185 verified 14922- 16604 position 14922- 18984 covered 0- 1689 EXPECTED_3' NO_OVERLAPS Scan reads from #135 to #145 for low coordinate in verified region 18744-20614 Test read # 135 ident 179369 16061- 20557 against verified region 18744- 20614 Test read # 137 ident 312548 16480- 21411 against verified region 18744- 20614 Test read # 141 ident 179375 17263- 20614 against verified region 18744- 20614 Test read # 142 ident 136713 17488- 25193 against verified region 18744- 20614 Test read # 145 ident 611169 17730- 19873 against verified region 18744- 20614 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 11 edgeTo tig 113073 reads # 135 179369- 611169 verified 18744- 20614 position 18744- 22830 covered 0- 1688 EXPECTED_3' NO_OVERLAPS Scan reads from #127 to #166 for low coordinate in verified region 19958-21755 Test read # 127 ident 31900 13733- 21128 against verified region 19958- 21755 Test read # 130 ident 31899 15056- 22662 against verified region 19958- 21755 Test read # 132 ident 683374 15248- 21755 against verified region 19958- 21755 Test read # 133 ident 262067 15498- 22938 against verified region 19958- 21755 Test read # 135 ident 179369 16061- 20557 against verified region 19958- 21755 Test read # 137 ident 312548 16480- 21411 against verified region 19958- 21755 Test read # 141 ident 179375 17263- 20614 against verified region 19958- 21755 Test read # 142 ident 136713 17488- 25193 against verified region 19958- 21755 Test read # 145 ident 611169 17730- 19873 against verified region 19958- 21755 Test read # 166 ident 216186 19047- 21539 against verified region 19958- 21755 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 12 edgeTo tig 113073 reads # 127 31900- 216186 verified 19958- 21755 position 19958- 24061 covered 0- 1633 EXPECTED_3' NO_OVERLAPS Scan reads from #130 to #181 for low coordinate in verified region 21425-22938 Test read # 130 ident 31899 15056- 22662 against verified region 21425- 22938 Test read # 132 ident 683374 15248- 21755 against verified region 21425- 22938 Test read # 133 ident 262067 15498- 22938 against verified region 21425- 22938 Test read # 135 ident 179369 16061- 20557 against verified region 21425- 22938 Test read # 137 ident 312548 16480- 21411 against verified region 21425- 22938 Test read # 141 ident 179375 17263- 20614 against verified region 21425- 22938 Test read # 142 ident 136713 17488- 25193 against verified region 21425- 22938 Test read # 145 ident 611169 17730- 19873 against verified region 21425- 22938 Test read # 166 ident 216186 19047- 21539 against verified region 21425- 22938 Test read # 181 ident 686523 20369- 21936 against verified region 21425- 22938 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 13 edgeTo tig 113073 reads # 130 31899- 686523 verified 21425- 22938 position 21425- 25528 covered 0- 1268 EXPECTED_3' NO_OVERLAPS Scan reads from #142 to #142 for low coordinate in verified region 23732-25193 Test read # 142 ident 136713 17488- 25193 against verified region 23732- 25193 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 14 edgeTo tig 113073 reads # 142 136713- 136713 verified 23732- 25193 position 23732- 27857 covered 0- 1405 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #1 for high coordinate in verified region 0-1474 Test read # 0 ident 262068 0- 8780 against verified region 0- 1474 Test read # 1 ident 262069 288- 9063 against verified region 0- 1474 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 15 edgeTo tig 113131 reads # 0 262068- 262069 verified 1474- 0 position 1474- -2649 covered 0- 1282 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #8 to #9 for high coordinate in verified region 1147-2334 Test read # 8 ident 40199 1147- 5680 against verified region 1147- 2334 Test read # 9 ident 61842 1368- 7401 against verified region 1147- 2334 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 16 edgeTo tig 113132 reads # 8 40199- 61842 verified 2334- 1147 position 2334- -1768 covered 0- 1099 EXPECTED_3' NO_OVERLAPS Scan reads from #17 to #17 for high coordinate in verified region 2382-3967 Test read # 17 ident 247105 2382- 6646 against verified region 2382- 3967 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 17 edgeTo tig 113132 reads # 17 247105- 247105 verified 3967- 2382 position 3967- -130 covered 0- 1557 EXPECTED_3' NO_OVERLAPS Scan reads from #26 to #26 for high coordinate in verified region 3705-4884 Test read # 26 ident 471213 3705- 7102 against verified region 3705- 4884 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 18 edgeTo tig 113132 reads # 26 471213- 471213 verified 4884- 3705 position 4884- 788 covered 0- 1152 EXPECTED_3' NO_OVERLAPS Scan reads from #9 to #9 for low coordinate in verified region 1699-4105 Test read # 9 ident 575824 1699- 11611 against verified region 1699- 4105 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 19 edgeTo tig 113234 reads # 9 575824- 575824 verified 1699- 4105 position -22- 4105 covered 1721- 4069 NO_OVERLAPS Scan reads from #17 to #21 for low coordinate in verified region 3115-5782 Test read # 17 ident 538606 3115- 8067 against verified region 3115- 5782 Test read # 18 ident 67728 3306- 9824 against verified region 3115- 5782 - CANDIDATE hangs 1707 4118 - SAVED Test read # 21 ident 633153 4103- 11114 against verified region 3115- 5782 - CANDIDATE hangs 2087 5014 Found appropriate intersecting read. createUnitigs()-- read 65518 place 20 edgeTo tig 113234 reads # 17 538606- 633153 verified 3115- 5782 position 1685- 5782 covered 1673- 4069 BREAK at pos 3306 read 67728 isLow 1 sim 1.0000 Scan reads from #28 to #28 for low coordinate in verified region 6166-8490 Test read # 28 ident 466897 6166- 14963 against verified region 6166- 8490 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 21 edgeTo tig 113234 reads # 28 466897- 466897 verified 6166- 8490 position 4445- 8490 covered 1721- 4069 NO_OVERLAPS Scan reads from #30 to #30 for low coordinate in verified region 7959-10375 Test read # 30 ident 75262 7959- 12896 against verified region 7959- 10375 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 22 edgeTo tig 113234 reads # 30 75262- 75262 verified 7959- 10375 position 6332- 10375 covered 1627- 4069 NO_OVERLAPS Scan reads from #0 to #0 for low coordinate in verified region 0-2380 Test read # 0 ident 111422 0- 10329 against verified region 0- 2380 Failed to find appropriate intersecting read. createUnitigs()-- read 65518 place 23 edgeTo tig 113235 reads # 0 111422- 111422 verified 0- 2380 position -1687- 2380 covered 1687- 4069 NO_OVERLAPS createUnitigs()-- discarding 5 breakpoints. createUnitigs()-- tig 47 len 34136 first read 25715 with 1 placements - last read 71537 with 1 placements createUnitigs()-- read 25715 place 0 edgeTo tig 47 reads # 1 424569- 50335 verified 4040- 1448 position 4040- 16 covered 0- 2723 SELF EXPECTED_3' createUnitigs()-- read 71537 place 0 edgeTo tig 47 reads # 63 599722- 279372 verified 34121- 27745 position 34135- 27745 covered 0- 6352 SELF createUnitigs()-- tig 50 len 67714 first read 168570 with 5 placements - last read 103118 with 7 placements createUnitigs()-- read 168570 place 0 edgeTo tig 50 reads # 1 168568- 242167 verified 251- 6259 position 12- 6259 covered 224- 6209 SELF EXPECTED_5' Scan reads from #17 to #26 for low coordinate in verified region 16479-17840 Test read # 17 ident 632050 6733- 17840 against verified region 16479- 17840 Test read # 20 ident 595246 10336- 17808 against verified region 16479- 17840 Test read # 26 ident 508055 14911- 17837 against verified region 16479- 17840 Failed to find appropriate intersecting read. createUnitigs()-- read 168570 place 1 edgeTo tig 563 reads # 17 632050- 508055 verified 17840- 16479 position 22718- 16479 covered 4874- 6209 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #6 for high coordinate in verified region 0-2034 Test read # 0 ident 303756 0- 8113 against verified region 0- 2034 Test read # 1 ident 303757 9- 8098 against verified region 0- 2034 Test read # 2 ident 584829 486- 7568 against verified region 0- 2034 Test read # 3 ident 584828 512- 7657 against verified region 0- 2034 Test read # 4 ident 66456 564- 7325 against verified region 0- 2034 Test read # 5 ident 303755 603- 8117 against verified region 0- 2034 Test read # 6 ident 584827 1037- 7517 against verified region 0- 2034 Failed to find appropriate intersecting read. createUnitigs()-- read 168570 place 2 edgeTo tig 15226 reads # 0 303756- 584827 verified 0- 2034 position -4237- 2034 covered 4250- 6209 EXPECTED_5' NO_OVERLAPS Scan reads from #15 to #80 for high coordinate in verified region 3922-5343 Test read # 15 ident 627974 3922- 8524 against verified region 3922- 5343 Test read # 16 ident 27983 3924- 11561 against verified region 3922- 5343 Test read # 17 ident 232031 3924- 11557 against verified region 3922- 5343 Test read # 18 ident 33227 3925- 11556 against verified region 3922- 5343 Test read # 19 ident 539646 3928- 11560 against verified region 3922- 5343 Test read # 20 ident 554901 3928- 10848 against verified region 3922- 5343 Test read # 22 ident 485464 3928- 8983 against verified region 3922- 5343 Test read # 23 ident 428397 3928- 7239 against verified region 3922- 5343 Test read # 24 ident 399420 3929- 10393 against verified region 3922- 5343 Test read # 25 ident 224739 3929- 9786 against verified region 3922- 5343 Test read # 26 ident 296158 3929- 9472 against verified region 3922- 5343 Test read # 27 ident 63586 3931- 9471 against verified region 3922- 5343 Test read # 29 ident 119036 3932- 10383 against verified region 3922- 5343 Test read # 32 ident 488186 3934- 11580 against verified region 3922- 5343 Test read # 33 ident 529109 3934- 9512 against verified region 3922- 5343 Test read # 34 ident 513317 3936- 9943 against verified region 3922- 5343 Test read # 35 ident 582520 3936- 9268 against verified region 3922- 5343 Test read # 37 ident 596400 3937- 11389 against verified region 3922- 5343 Test read # 38 ident 621052 3940- 11421 against verified region 3922- 5343 Test read # 39 ident 621344 3941- 9149 against verified region 3922- 5343 Test read # 40 ident 485465 3942- 10648 against verified region 3922- 5343 Test read # 41 ident 680461 3943- 8468 against verified region 3922- 5343 Test read # 42 ident 647486 3944- 11562 against verified region 3922- 5343 Test read # 48 ident 316997 3950- 9732 against verified region 3922- 5343 Test read # 51 ident 696661 3955- 9282 against verified region 3922- 5343 Test read # 52 ident 639221 3956- 9731 against verified region 3922- 5343 Test read # 57 ident 678714 4017- 9802 against verified region 3922- 5343 Test read # 61 ident 483127 4085- 9906 against verified region 3922- 5343 Test read # 62 ident 483126 4086- 9907 against verified region 3922- 5343 Test read # 63 ident 483125 4086- 9906 against verified region 3922- 5343 Test read # 64 ident 483124 4090- 9900 against verified region 3922- 5343 Test read # 65 ident 483128 4101- 9909 against verified region 3922- 5343 Test read # 66 ident 483129 4104- 9909 against verified region 3922- 5343 Test read # 67 ident 27422 4146- 11556 against verified region 3922- 5343 Test read # 70 ident 163794 4303- 11553 against verified region 3922- 5343 Test read # 74 ident 683734 4379- 10878 against verified region 3922- 5343 Test read # 75 ident 255887 4400- 11553 against verified region 3922- 5343 Test read # 76 ident 255888 4410- 11547 against verified region 3922- 5343 Test read # 77 ident 255889 4414- 11558 against verified region 3922- 5343 Test read # 78 ident 47833 4509- 11568 against verified region 3922- 5343 Test read # 80 ident 503112 4628- 11557 against verified region 3922- 5343 Failed to find appropriate intersecting read. createUnitigs()-- read 168570 place 3 edgeTo tig 41083 reads # 15 627974- 503112 verified 3922- 5343 position -941- 5343 covered 4871- 6209 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #2 for high coordinate in verified region 0-1547 Test read # 0 ident 183839 0- 8874 against verified region 0- 1547 Test read # 1 ident 183838 12- 9154 against verified region 0- 1547 Test read # 2 ident 517395 723- 12432 against verified region 0- 1547 Failed to find appropriate intersecting read. createUnitigs()-- read 168570 place 4 edgeTo tig 113177 reads # 0 183839- 517395 verified 0- 1547 position -4843- 1547 covered 4837- 6209 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 103118 place 0 edgeTo tig 50 reads # 239 163519- 96353 verified 60201- 67679 position 60201- 67711 covered 0- 7497 SELF Scan reads from #23 to #25 for low coordinate in verified region 12660-14096 Test read # 23 ident 240046 12660- 13852 against verified region 12660- 14096 Test read # 24 ident 533229 12664- 13881 against verified region 12660- 14096 - CANDIDATE hangs 5517 -800 Test read # 25 ident 225372 12668- 14096 against verified region 12660- 14096 - CANDIDATE hangs 5519 -588 Failed to find appropriate intersecting read. createUnitigs()-- read 103118 place 1 edgeTo tig 2716 reads # 23 240046- 225372 verified 12660- 14096 position 7147- 14683 covered 5515- 6909 EXPECTED_3' NO_OVERLAPS Scan reads from #4 to #4 for low coordinate in verified region 1522-2554 Test read # 4 ident 161539 1522- 2554 against verified region 1522- 2554 Failed to find appropriate intersecting read. createUnitigs()-- read 103118 place 2 edgeTo tig 113196 reads # 4 161539- 161539 verified 1522- 2554 position -3994- 3512 covered 5516- 6539 EXPECTED_3' NO_OVERLAPS Scan reads from #20 to #20 for low coordinate in verified region 3372-4865 Test read # 20 ident 600095 3372- 4865 against verified region 3372- 4865 Failed to find appropriate intersecting read. createUnitigs()-- read 103118 place 3 edgeTo tig 113196 reads # 20 600095- 600095 verified 3372- 4865 position -2145- 5392 covered 5517- 6970 EXPECTED_3' NO_OVERLAPS Scan reads from #56 to #66 for low coordinate in verified region 5044-7007 Test read # 56 ident 251506 5044- 6397 against verified region 5044- 7007 Test read # 63 ident 448885 5243- 6432 against verified region 5044- 7007 - CANDIDATE hangs 5721 -615 Test read # 66 ident 628510 5495- 7007 against verified region 5044- 7007 - CANDIDATE hangs 5517 -506 Failed to find appropriate intersecting read. createUnitigs()-- read 103118 place 4 edgeTo tig 113196 reads # 56 251506- 628510 verified 5044- 7007 position -337- 7193 covered 5517- 6991 EXPECTED_3' NO_OVERLAPS Scan reads from #185 to #217 for low coordinate in verified region 6997-8882 Test read # 185 ident 128451 6997- 8460 against verified region 6997- 8882 Test read # 217 ident 391510 7427- 8882 against verified region 6997- 8882 - CANDIDATE hangs 5527 -551 Failed to find appropriate intersecting read. createUnitigs()-- read 103118 place 5 edgeTo tig 113196 reads # 185 128451- 391510 verified 6997- 8882 position 1693- 9226 covered 5510- 6946 EXPECTED_3' NO_OVERLAPS Scan reads from #4 to #4 for low coordinate in verified region 1397-2490 Test read # 4 ident 126528 1397- 2490 against verified region 1397- 2490 Failed to find appropriate intersecting read. createUnitigs()-- read 103118 place 6 edgeTo tig 582616 reads # 4 126528- 126528 verified 1397- 2490 position -4117- 3380 covered 5514- 6607 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 54 len 31078 first read 133002 with 3 placements - last read 460732 with 1 placements createUnitigs()-- read 133002 place 0 edgeTo tig 54 reads # 1 447725- 16758 verified 5142- 936 position 5142- 1 covered 0- 4178 SELF EXPECTED_3' Scan reads from #7 to #7 for low coordinate in verified region 3775-4733 Test read # 7 ident 258056 3775- 6490 against verified region 3775- 4733 Failed to find appropriate intersecting read. createUnitigs()-- read 133002 place 1 edgeTo tig 6899 reads # 7 258056- 258056 verified 3775- 4733 position -390- 4733 covered 4165- 5107 NO_OVERLAPS Scan reads from #9 to #22 for low coordinate in verified region 1202-2207 Test read # 9 ident 212093 1202- 2991 against verified region 1202- 2207 Test read # 11 ident 74401 1203- 4379 against verified region 1202- 2207 - CANDIDATE hangs 4160 2163 - SAVED Test read # 21 ident 380112 1207- 3641 against verified region 1202- 2207 - CANDIDATE hangs 4160 1429 Test read # 22 ident 76733 1208- 4337 against verified region 1202- 2207 - CANDIDATE hangs 4164 2122 Found appropriate intersecting read. createUnitigs()-- read 133002 place 2 edgeTo tig 8700 reads # 9 212093- 76733 verified 1202- 2207 position -2955- 2207 covered 4159- 5107 BREAK at pos 1203 read 74401 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 460732 place 0 edgeTo tig 54 reads # 71 49093- 49092 verified 26239- 31074 position 26239- 31075 covered 0- 4795 SELF EXPECTED_3' createUnitigs()-- tig 58 len 76374 first read 491089 with 1 placements - last read 486340 with 1 placements createUnitigs()-- read 491089 place 0 edgeTo tig 58 reads # 1 491090- 145908 verified 10816- 17 position 10816- 17 covered 0- 10775 SELF createUnitigs()-- read 486340 place 0 edgeTo tig 58 reads # 56 43438- 265309 verified 61237- 66346 position 61237- 76370 covered 0- 5109 SELF EXPECTED_3' createUnitigs()-- tig 62 len 8430 first read 521661 with 7 placements - last read 569033 with 6 placements createUnitigs()-- read 521661 place 0 edgeTo tig 62 reads # 1 521660- 521034 verified 47- 6384 position 8- 6384 covered 0- 6270 SELF Scan reads from #0 to #2 for high coordinate in verified region 0-3246 Test read # 0 ident 624657 0- 7598 against verified region 0- 3246 Test read # 1 ident 193170 127- 2519 against verified region 0- 3246 - CANDIDATE hangs 3228 -709 Test read # 2 ident 290491 153- 3861 against verified region 0- 3246 Failed to find appropriate intersecting read. createUnitigs()-- read 521661 place 1 edgeTo tig 514 reads # 0 624657- 290491 verified 0- 3246 position -3102- 3246 covered 3109- 6270 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #2 for low coordinate in verified region 8404-10337 Test read # 2 ident 75314 3582- 10337 against verified region 8404- 10337 Failed to find appropriate intersecting read. createUnitigs()-- read 521661 place 2 edgeTo tig 7266 reads # 2 75314- 75314 verified 10337- 8404 position 14728- 8404 covered 4391- 6270 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #3 for low coordinate in verified region 6241-7521 Test read # 0 ident 107164 0- 7491 against verified region 6241- 7521 Test read # 1 ident 107167 14- 7521 against verified region 6241- 7521 Test read # 2 ident 107168 25- 7509 against verified region 6241- 7521 Test read # 3 ident 72920 2899- 6830 against verified region 6241- 7521 Failed to find appropriate intersecting read. createUnitigs()-- read 521661 place 3 edgeTo tig 10686 reads # 0 107164- 72920 verified 7521- 6241 position 12540- 6241 covered 5024- 6270 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #3 for high coordinate in verified region 392-1727 Test read # 3 ident 356540 392- 1727 against verified region 392- 1727 Failed to find appropriate intersecting read. createUnitigs()-- read 521661 place 4 edgeTo tig 113061 reads # 3 356540- 356540 verified 392- 1727 position -1723- 4576 covered 2115- 3421 EXPECTED_5' NO_OVERLAPS Scan reads from #8 to #84 for low coordinate in verified region 16555-20830 Test read # 8 ident 380812 6150- 19408 against verified region 16555- 20830 Test read # 9 ident 243692 6211- 18857 against verified region 16555- 20830 Test read # 10 ident 275569 6348- 17449 against verified region 16555- 20830 Test read # 11 ident 275568 6367- 17700 against verified region 16555- 20830 Test read # 46 ident 448581 11106- 17175 against verified region 16555- 20830 Test read # 52 ident 566171 11409- 19462 against verified region 16555- 20830 Test read # 53 ident 703476 11500- 20807 against verified region 16555- 20830 Test read # 55 ident 31959 11669- 20066 against verified region 16555- 20830 Test read # 57 ident 716016 11912- 19094 against verified region 16555- 20830 Test read # 58 ident 716014 11916- 19079 against verified region 16555- 20830 Test read # 59 ident 716012 11917- 19088 against verified region 16555- 20830 Test read # 60 ident 716015 11941- 19066 against verified region 16555- 20830 Test read # 61 ident 716013 11947- 19072 against verified region 16555- 20830 Test read # 62 ident 250987 12130- 20120 against verified region 16555- 20830 Test read # 63 ident 207199 12316- 20092 against verified region 16555- 20830 Test read # 64 ident 397181 12748- 18442 against verified region 16555- 20830 Test read # 66 ident 397180 13059- 18410 against verified region 16555- 20830 Test read # 68 ident 158701 13165- 18213 against verified region 16555- 20830 Test read # 69 ident 250985 13467- 20131 against verified region 16555- 20830 Test read # 70 ident 243693 13475- 18922 against verified region 16555- 20830 Test read # 71 ident 703477 13676- 20830 against verified region 16555- 20830 Test read # 72 ident 283965 13704- 19803 against verified region 16555- 20830 Test read # 73 ident 167281 13712- 19307 against verified region 16555- 20830 Test read # 74 ident 250986 13784- 20120 against verified region 16555- 20830 Test read # 75 ident 485805 13836- 20814 against verified region 16555- 20830 Test read # 76 ident 240690 13842- 19009 against verified region 16555- 20830 Test read # 77 ident 485804 13874- 20810 against verified region 16555- 20830 Test read # 78 ident 17947 13877- 20601 against verified region 16555- 20830 Test read # 79 ident 265301 13885- 19657 against verified region 16555- 20830 Test read # 81 ident 480518 13942- 19886 against verified region 16555- 20830 Test read # 82 ident 480519 13956- 19229 against verified region 16555- 20830 Test read # 83 ident 480517 13992- 19876 against verified region 16555- 20830 Test read # 84 ident 563782 14056- 18590 against verified region 16555- 20830 Failed to find appropriate intersecting read. createUnitigs()-- read 521661 place 5 edgeTo tig 113062 reads # 8 380812- 563782 verified 20830- 16555 position 22911- 16555 covered 2114- 6270 EXPECTED_5' NO_OVERLAPS Scan reads from #6 to #21 for low coordinate in verified region 2389-6586 Test read # 6 ident 214962 862- 5898 against verified region 2389- 6586 Test read # 7 ident 214959 1077- 5887 against verified region 2389- 6586 Test read # 8 ident 130332 1169- 3838 against verified region 2389- 6586 Test read # 10 ident 445179 2029- 4734 against verified region 2389- 6586 Test read # 11 ident 559493 2728- 5854 against verified region 2389- 6586 - CANDIDATE hangs 2801 -333 Test read # 12 ident 615236 3000- 6549 against verified region 2389- 6586 - CANDIDATE hangs 2131 -613 Test read # 13 ident 6637 3570- 6477 against verified region 2389- 6586 - CANDIDATE hangs 2217 -1180 Test read # 14 ident 250988 3675- 5508 against verified region 2389- 6586 - CANDIDATE hangs 3181 -1279 Test read # 15 ident 609458 3971- 6412 against verified region 2389- 6586 - CANDIDATE hangs 2262 -1576 Test read # 16 ident 81885 4128- 6569 against verified region 2389- 6586 - CANDIDATE hangs 2122 -1762 Test read # 17 ident 435134 4164- 5489 against verified region 2389- 6586 - CANDIDATE hangs 3182 -1767 Test read # 19 ident 81886 4510- 6549 against verified region 2389- 6586 - CANDIDATE hangs 2146 -2132 Test read # 20 ident 609455 4594- 6557 against verified region 2389- 6586 - CANDIDATE hangs 2122 -2220 Test read # 21 ident 702416 4618- 6586 against verified region 2389- 6586 - CANDIDATE hangs 2119 -2225 Failed to find appropriate intersecting read. createUnitigs()-- read 521661 place 6 edgeTo tig 113063 reads # 6 214962- 702416 verified 6586- 2389 position 8682- 2389 covered 2119- 6270 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 569033 place 0 edgeTo tig 62 reads # 0 521661- 442793 verified 143- 8394 position 143- 8394 covered 0- 8146 SELF EXPECTED_3' Scan reads from #1 to #4 for low coordinate in verified region 127-2805 Test read # 1 ident 193170 127- 2519 against verified region 127- 2805 Test read # 3 ident 654854 183- 2805 against verified region 127- 2805 - CANDIDATE hangs 3149 -2444 Test read # 4 ident 283718 392- 2200 against verified region 127- 2805 - CANDIDATE hangs 3341 -3038 Failed to find appropriate intersecting read. createUnitigs()-- read 569033 place 1 edgeTo tig 514 reads # 1 193170- 283718 verified 127- 2805 position -2962- 5243 covered 3100- 5712 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #3 for low coordinate in verified region 392-1727 Test read # 3 ident 356540 392- 1727 against verified region 392- 1727 Failed to find appropriate intersecting read. createUnitigs()-- read 569033 place 2 edgeTo tig 113061 reads # 3 356540- 356540 verified 392- 1727 position -1587- 6592 covered 1979- 3291 EXPECTED_3' NO_OVERLAPS Scan reads from #8 to #84 for high coordinate in verified region 14544-20830 Test read # 8 ident 380812 6150- 19408 against verified region 14544- 20830 - CANDIDATE hangs 3346 8277 - SAVED Test read # 9 ident 243692 6211- 18857 against verified region 14544- 20830 - CANDIDATE hangs 3790 8230 Test read # 10 ident 275569 6348- 17449 against verified region 14544- 20830 - CANDIDATE hangs 5258 8078 Test read # 11 ident 275568 6367- 17700 against verified region 14544- 20830 - CANDIDATE hangs 5033 8072 Test read # 27 ident 190136 8766- 15450 against verified region 14544- 20830 - CANDIDATE hangs 7239 5649 Test read # 30 ident 563488 9096- 15904 against verified region 14544- 20830 - CANDIDATE hangs 6834 5405 Test read # 31 ident 390894 10274- 15450 against verified region 14544- 20830 - CANDIDATE hangs 7288 4242 Test read # 32 ident 390893 10284- 15984 against verified region 14544- 20830 - CANDIDATE hangs 6771 4251 Test read # 33 ident 183926 10555- 15487 against verified region 14544- 20830 - CANDIDATE hangs 7257 3986 Test read # 34 ident 613501 10596- 15909 against verified region 14544- 20830 - CANDIDATE hangs 6851 3951 Test read # 35 ident 563489 10702- 15911 against verified region 14544- 20830 - CANDIDATE hangs 6827 3819 Test read # 36 ident 717040 10738- 15836 against verified region 14544- 20830 - CANDIDATE hangs 6887 3752 Test read # 37 ident 717041 10746- 15895 against verified region 14544- 20830 - CANDIDATE hangs 6827 3730 Test read # 38 ident 717042 10748- 15677 against verified region 14544- 20830 - CANDIDATE hangs 7043 3747 Test read # 39 ident 436981 10787- 16173 against verified region 14544- 20830 - CANDIDATE hangs 6577 3743 Test read # 40 ident 157173 10872- 15665 against verified region 14544- 20830 - CANDIDATE hangs 7055 3612 Test read # 46 ident 448581 11106- 17175 against verified region 14544- 20830 - CANDIDATE hangs 5555 3401 Test read # 47 ident 157174 11143- 15479 against verified region 14544- 20830 - CANDIDATE hangs 7248 3377 Test read # 52 ident 566171 11409- 19462 against verified region 14544- 20830 - CANDIDATE hangs 3326 3119 - SAVED Test read # 53 ident 703476 11500- 20807 against verified region 14544- 20830 - CANDIDATE hangs 1981 3022 - SAVED Test read # 54 ident 314103 11660- 15786 against verified region 14544- 20830 - CANDIDATE hangs 6957 2869 Test read # 55 ident 31959 11669- 20066 against verified region 14544- 20830 - CANDIDATE hangs 2812 2971 Test read # 56 ident 716011 11896- 16725 against verified region 14544- 20830 - CANDIDATE hangs 6097 2719 Test read # 57 ident 716016 11912- 19094 against verified region 14544- 20830 - CANDIDATE hangs 3756 2715 Test read # 58 ident 716014 11916- 19079 against verified region 14544- 20830 - CANDIDATE hangs 3768 2711 Test read # 59 ident 716012 11917- 19088 against verified region 14544- 20830 - CANDIDATE hangs 3756 2709 Test read # 60 ident 716015 11941- 19066 against verified region 14544- 20830 - CANDIDATE hangs 3776 2693 Test read # 61 ident 716013 11947- 19072 against verified region 14544- 20830 - CANDIDATE hangs 3776 2681 Test read # 62 ident 250987 12130- 20120 against verified region 14544- 20830 - CANDIDATE hangs 2671 2410 Test read # 63 ident 207199 12316- 20092 against verified region 14544- 20830 - CANDIDATE hangs 2740 2234 Test read # 64 ident 397181 12748- 18442 against verified region 14544- 20830 - CANDIDATE hangs 4308 1811 Test read # 66 ident 397180 13059- 18410 against verified region 14544- 20830 - CANDIDATE hangs 4326 1484 Test read # 68 ident 158701 13165- 18213 against verified region 14544- 20830 - CANDIDATE hangs 4558 1396 Test read # 69 ident 250985 13467- 20131 against verified region 14544- 20830 - CANDIDATE hangs 2670 1101 Test read # 70 ident 243693 13475- 18922 against verified region 14544- 20830 - CANDIDATE hangs 3782 1112 Test read # 71 ident 703477 13676- 20830 against verified region 14544- 20830 Test read # 72 ident 283965 13704- 19803 against verified region 14544- 20830 - CANDIDATE hangs 2992 853 Test read # 73 ident 167281 13712- 19307 against verified region 14544- 20830 - CANDIDATE hangs 3474 853 Test read # 74 ident 250986 13784- 20120 against verified region 14544- 20830 - CANDIDATE hangs 2672 783 Test read # 75 ident 485805 13836- 20814 against verified region 14544- 20830 - CANDIDATE hangs 1978 724 - SAVED Test read # 76 ident 240690 13842- 19009 against verified region 14544- 20830 - CANDIDATE hangs 3790 747 Test read # 77 ident 485804 13874- 20810 against verified region 14544- 20830 - CANDIDATE hangs 1983 682 Test read # 78 ident 17947 13877- 20601 against verified region 14544- 20830 - CANDIDATE hangs 2210 698 Test read # 79 ident 265301 13885- 19657 against verified region 14544- 20830 - CANDIDATE hangs 3122 681 Test read # 80 ident 654114 13917- 18246 against verified region 14544- 20830 - CANDIDATE hangs 4502 664 Test read # 81 ident 480518 13942- 19886 against verified region 14544- 20830 - CANDIDATE hangs 2858 635 Test read # 82 ident 480519 13956- 19229 against verified region 14544- 20830 - CANDIDATE hangs 3527 628 Test read # 83 ident 480517 13992- 19876 against verified region 14544- 20830 - CANDIDATE hangs 2853 585 Test read # 84 ident 563782 14056- 18590 against verified region 14544- 20830 - CANDIDATE hangs 4218 511 Found appropriate intersecting read. createUnitigs()-- read 569033 place 3 edgeTo tig 113062 reads # 8 380812- 563782 verified 20830- 14544 position 22768- 14544 covered 1978- 8156 BREAK at pos 20814 read 485805 isLow 0 sim 0.9636 Scan reads from #0 to #23 for high coordinate in verified region 368-6586 Test read # 0 ident 703478 0- 1583 against verified region 368- 6586 - CANDIDATE hangs 6945 344 - SAVED Test read # 1 ident 656570 46- 2657 against verified region 368- 6586 - CANDIDATE hangs 5858 286 - SAVED Test read # 2 ident 220128 59- 1581 against verified region 368- 6586 - CANDIDATE hangs 6936 285 Test read # 3 ident 619965 76- 1909 against verified region 368- 6586 - CANDIDATE hangs 6634 282 Test read # 4 ident 105320 234- 1961 against verified region 368- 6586 - CANDIDATE hangs 6566 114 Test read # 5 ident 474354 497- 2606 against verified region 368- 6586 - CANDIDATE hangs 5927 -151 Test read # 6 ident 214962 862- 5898 against verified region 368- 6586 - CANDIDATE hangs 2668 -491 Test read # 7 ident 214959 1077- 5887 against verified region 368- 6586 - CANDIDATE hangs 2677 -712 Test read # 8 ident 130332 1169- 3838 against verified region 368- 6586 - CANDIDATE hangs 4709 -795 Test read # 9 ident 446855 2022- 3225 against verified region 368- 6586 - CANDIDATE hangs 5317 -1623 Test read # 10 ident 445179 2029- 4734 against verified region 368- 6586 - CANDIDATE hangs 3797 -1650 Test read # 11 ident 559493 2728- 5854 against verified region 368- 6586 - CANDIDATE hangs 2671 -2345 Test read # 12 ident 615236 3000- 6549 against verified region 368- 6586 - CANDIDATE hangs 1996 -2627 Test read # 13 ident 6637 3570- 6477 against verified region 368- 6586 - CANDIDATE hangs 2084 -3195 Test read # 14 ident 250988 3675- 5508 against verified region 368- 6586 - CANDIDATE hangs 3053 -3294 Test read # 15 ident 609458 3971- 6412 against verified region 368- 6586 - CANDIDATE hangs 2129 -3589 Test read # 16 ident 81885 4128- 6569 against verified region 368- 6586 - CANDIDATE hangs 1986 -3775 Test read # 17 ident 435134 4164- 5489 against verified region 368- 6586 - CANDIDATE hangs 3054 -3780 Test read # 18 ident 98198 4194- 5371 against verified region 368- 6586 - CANDIDATE hangs 3184 -3819 Test read # 19 ident 81886 4510- 6549 against verified region 368- 6586 - CANDIDATE hangs 2011 -4140 Test read # 20 ident 609455 4594- 6557 against verified region 368- 6586 - CANDIDATE hangs 1986 -4227 Test read # 21 ident 702416 4618- 6586 against verified region 368- 6586 Test read # 22 ident 532541 4622- 6539 against verified region 368- 6586 - CANDIDATE hangs 1990 -4249 Test read # 23 ident 160371 4653- 6549 against verified region 368- 6586 - CANDIDATE hangs 2015 -4280 Found appropriate intersecting read. createUnitigs()-- read 569033 place 4 edgeTo tig 113063 reads # 0 703478- 160371 verified 6586- 368 position 8544- 368 covered 1983- 8156 BREAK at pos 2657 read 656570 isLow 0 sim 0.8155 Scan reads from #18 to #18 for low coordinate in verified region 147-1451 Test read # 18 ident 108022 147- 1451 against verified region 147- 1451 Failed to find appropriate intersecting read. createUnitigs()-- read 569033 place 5 edgeTo tig 113088 reads # 18 108022- 108022 verified 147- 1451 position -1838- 6323 covered 1985- 3284 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 72 len 12236 first read 574084 with 3 placements - last read 80005 with 4 placements createUnitigs()-- read 574084 place 0 edgeTo tig 72 reads # 1 80005- 245862 verified 6778- 2252 position 6778- 0 covered 0- 4428 SELF EXPECTED_3' Scan reads from #71 to #133 for high coordinate in verified region 14103-17396 Test read # 71 ident 666476 7851- 15463 against verified region 14103- 17396 - CANDIDATE hangs 5364 6197 - SAVED Test read # 81 ident 124127 8288- 14717 against verified region 14103- 17396 - CANDIDATE hangs 6129 5772 Test read # 83 ident 47026 8456- 16535 against verified region 14103- 17396 - CANDIDATE hangs 4319 5616 - SAVED Test read # 86 ident 47025 8564- 16408 against verified region 14103- 17396 - CANDIDATE hangs 4405 5485 Test read # 90 ident 519929 9444- 15401 against verified region 14103- 17396 - CANDIDATE hangs 5443 4629 Test read # 91 ident 519931 9445- 15401 against verified region 14103- 17396 - CANDIDATE hangs 5454 4643 Test read # 92 ident 519930 9448- 15390 against verified region 14103- 17396 - CANDIDATE hangs 5456 4630 Test read # 93 ident 519927 9452- 15400 against verified region 14103- 17396 - CANDIDATE hangs 5447 4628 Test read # 94 ident 519928 9695- 15404 against verified region 14103- 17396 - CANDIDATE hangs 5441 4389 Test read # 100 ident 434056 10608- 15401 against verified region 14103- 17396 - CANDIDATE hangs 5440 3496 Test read # 101 ident 216873 10765- 16489 against verified region 14103- 17396 - CANDIDATE hangs 4406 3379 Test read # 102 ident 39552 10941- 15666 against verified region 14103- 17396 - CANDIDATE hangs 5190 3222 Test read # 105 ident 364379 11501- 15615 against verified region 14103- 17396 - CANDIDATE hangs 5229 2632 Test read # 113 ident 519926 12470- 15182 against verified region 14103- 17396 - CANDIDATE hangs 5672 1659 Test read # 118 ident 131063 12639- 14886 against verified region 14103- 17396 - CANDIDATE hangs 5972 1497 Test read # 122 ident 635341 12750- 15848 against verified region 14103- 17396 - CANDIDATE hangs 4998 1371 Test read # 123 ident 464805 12784- 17396 against verified region 14103- 17396 Test read # 124 ident 186348 12811- 16480 against verified region 14103- 17396 - CANDIDATE hangs 4369 1329 Test read # 133 ident 540408 13267- 16599 against verified region 14103- 17396 - CANDIDATE hangs 4279 852 - SAVED Found appropriate intersecting read. createUnitigs()-- read 574084 place 1 edgeTo tig 113079 reads # 71 666476- 540408 verified 17396- 14103 position 20852- 14103 covered 3497- 6695 BREAK at pos 16599 read 540408 isLow 0 sim 1.0000 Scan reads from #0 to #58 for high coordinate in verified region 0-3638 Test read # 0 ident 330227 0- 3462 against verified region 0- 3638 - CANDIDATE hangs 105 -3200 Test read # 2 ident 603515 39- 6132 against verified region 0- 3638 Test read # 3 ident 603513 80- 6078 against verified region 0- 3638 Test read # 4 ident 582325 228- 6558 against verified region 0- 3638 Test read # 5 ident 582322 231- 6538 against verified region 0- 3638 Test read # 6 ident 582324 251- 6542 against verified region 0- 3638 Test read # 7 ident 582323 256- 6564 against verified region 0- 3638 Test read # 8 ident 424331 275- 4771 against verified region 0- 3638 Test read # 9 ident 331845 453- 9699 against verified region 0- 3638 Test read # 10 ident 710646 494- 2323 against verified region 0- 3638 - CANDIDATE hangs 1217 -3762 Test read # 11 ident 300361 528- 4337 against verified region 0- 3638 Test read # 12 ident 498575 539- 4989 against verified region 0- 3638 Test read # 17 ident 187908 780- 1838 against verified region 0- 3638 - CANDIDATE hangs 1617 -4035 Test read # 18 ident 652318 819- 6806 against verified region 0- 3638 Test read # 19 ident 652319 875- 6893 against verified region 0- 3638 Test read # 20 ident 128646 938- 3697 against verified region 0- 3638 Test read # 21 ident 356402 954- 9726 against verified region 0- 3638 Test read # 22 ident 694505 962- 6474 against verified region 0- 3638 Test read # 23 ident 356404 967- 9716 against verified region 0- 3638 Test read # 24 ident 356403 970- 9804 against verified region 0- 3638 Test read # 25 ident 714910 980- 7470 against verified region 0- 3638 Test read # 26 ident 652321 983- 3922 against verified region 0- 3638 Test read # 27 ident 602917 1026- 4364 against verified region 0- 3638 Test read # 28 ident 639956 1059- 13616 against verified region 0- 3638 Test read # 30 ident 332062 1175- 3638 against verified region 0- 3638 Test read # 31 ident 96444 1280- 6408 against verified region 0- 3638 Test read # 32 ident 639955 1299- 13817 against verified region 0- 3638 Test read # 33 ident 425899 1320- 6074 against verified region 0- 3638 Test read # 34 ident 232970 1365- 11548 against verified region 0- 3638 Test read # 35 ident 396936 1477- 4615 against verified region 0- 3638 Test read # 36 ident 219302 1499- 8975 against verified region 0- 3638 Test read # 37 ident 219301 1504- 8970 against verified region 0- 3638 Test read # 38 ident 96443 1523- 6367 against verified region 0- 3638 Test read # 39 ident 219303 1557- 3445 against verified region 0- 3638 - CANDIDATE hangs 158 -4716 Test read # 41 ident 219300 1586- 8950 against verified region 0- 3638 Test read # 42 ident 56096 1588- 8928 against verified region 0- 3638 Test read # 43 ident 431777 1603- 2855 against verified region 0- 3638 - CANDIDATE hangs 720 -4773 Test read # 45 ident 344140 1791- 3288 against verified region 0- 3638 - CANDIDATE hangs 273 -4959 Test read # 46 ident 192446 2160- 9409 against verified region 0- 3638 Test read # 47 ident 192445 2167- 9238 against verified region 0- 3638 Test read # 48 ident 721836 2365- 3652 against verified region 0- 3638 Test read # 49 ident 407280 2371- 8827 against verified region 0- 3638 Test read # 50 ident 289829 2442- 6964 against verified region 0- 3638 Test read # 51 ident 365173 2662- 5054 against verified region 0- 3638 Test read # 53 ident 365174 2711- 8530 against verified region 0- 3638 Test read # 54 ident 365172 2715- 8161 against verified region 0- 3638 Test read # 55 ident 618704 2766- 7630 against verified region 0- 3638 Test read # 56 ident 656951 2913- 9203 against verified region 0- 3638 Test read # 57 ident 100341 2933- 12266 against verified region 0- 3638 Test read # 58 ident 100340 2990- 5075 against verified region 0- 3638 Failed to find appropriate intersecting read. createUnitigs()-- read 574084 place 2 edgeTo tig 113080 reads # 0 330227- 100340 verified 3638- 0 position 3638- -3178 covered 0- 3495 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 80005 place 0 edgeTo tig 72 reads # 0 574084- 166152 verified 12215- 2269 position 12215- 2269 covered 0- 9895 SELF Scan reads from #0 to #121 for low coordinate in verified region 0-9105 Test read # 0 ident 330227 0- 3462 against verified region 0- 9105 Test read # 1 ident 603514 31- 6143 against verified region 0- 9105 - CANDIDATE hangs 2960 -1071 Test read # 2 ident 603515 39- 6132 against verified region 0- 9105 - CANDIDATE hangs 2963 -1068 Test read # 3 ident 603513 80- 6078 against verified region 0- 9105 - CANDIDATE hangs 3009 -1073 Test read # 4 ident 582325 228- 6558 against verified region 0- 9105 - CANDIDATE hangs 2500 -1157 Test read # 5 ident 582322 231- 6538 against verified region 0- 9105 - CANDIDATE hangs 2533 -1176 Test read # 6 ident 582324 251- 6542 against verified region 0- 9105 - CANDIDATE hangs 2519 -1188 Test read # 7 ident 582323 256- 6564 against verified region 0- 9105 - CANDIDATE hangs 2502 -1200 Test read # 9 ident 331845 453- 9699 against verified region 0- 9105 - CANDIDATE hangs -588 -1393 - SAVED Test read # 10 ident 710646 494- 2323 against verified region 0- 9105 - CANDIDATE hangs 6626 -1502 Test read # 11 ident 300361 528- 4337 against verified region 0- 9105 - CANDIDATE hangs 4673 -1456 Test read # 12 ident 498575 539- 4989 against verified region 0- 9105 - CANDIDATE hangs 4033 -1435 Test read # 14 ident 331844 634- 3340 against verified region 0- 9105 - CANDIDATE hangs 5629 -1630 Test read # 18 ident 652318 819- 6806 against verified region 0- 9105 - CANDIDATE hangs 2274 -1813 Test read # 19 ident 652319 875- 6893 against verified region 0- 9105 - CANDIDATE hangs 2163 -1829 Test read # 21 ident 356402 954- 9726 against verified region 0- 9105 - CANDIDATE hangs -657 -1904 Test read # 22 ident 694505 962- 6474 against verified region 0- 9105 - CANDIDATE hangs 2571 -1904 Test read # 23 ident 356404 967- 9716 against verified region 0- 9105 - CANDIDATE hangs -648 -1913 Test read # 24 ident 356403 970- 9804 against verified region 0- 9105 - CANDIDATE hangs -736 -1919 Test read # 25 ident 714910 980- 7470 against verified region 0- 9105 - CANDIDATE hangs 1589 -1919 Test read # 27 ident 602917 1026- 4364 against verified region 0- 9105 - CANDIDATE hangs 4636 -1993 Test read # 29 ident 695372 1077- 3435 against verified region 0- 9105 - CANDIDATE hangs 5590 -2042 Test read # 31 ident 96444 1280- 6408 against verified region 0- 9105 - CANDIDATE hangs 2644 -2220 Test read # 33 ident 425899 1320- 6074 against verified region 0- 9105 - CANDIDATE hangs 2968 -2282 Test read # 34 ident 232970 1365- 11548 against verified region 0- 9105 - CANDIDATE hangs -2417 -2297 Test read # 35 ident 396936 1477- 4615 against verified region 0- 9105 - CANDIDATE hangs 4377 -2414 Test read # 36 ident 219302 1499- 8975 against verified region 0- 9105 - CANDIDATE hangs 117 -2412 Test read # 37 ident 219301 1504- 8970 against verified region 0- 9105 - CANDIDATE hangs 115 -2418 Test read # 38 ident 96443 1523- 6367 against verified region 0- 9105 - CANDIDATE hangs 2680 -2436 Test read # 39 ident 219303 1557- 3445 against verified region 0- 9105 - CANDIDATE hangs 5565 -2508 Test read # 40 ident 28419 1567- 2732 against verified region 0- 9105 - CANDIDATE hangs 6243 -2502 Test read # 41 ident 219300 1586- 8950 against verified region 0- 9105 - CANDIDATE hangs 152 -2504 Test read # 42 ident 56096 1588- 8928 against verified region 0- 9105 - CANDIDATE hangs 155 -2498 Test read # 43 ident 431777 1603- 2855 against verified region 0- 9105 - CANDIDATE hangs 6130 -2565 Test read # 44 ident 137564 1690- 3568 against verified region 0- 9105 - CANDIDATE hangs 5449 -2624 Test read # 45 ident 344140 1791- 3288 against verified region 0- 9105 - CANDIDATE hangs 5679 -2753 Test read # 46 ident 192446 2160- 9409 against verified region 0- 9105 - CANDIDATE hangs -399 -3073 Test read # 47 ident 192445 2167- 9238 against verified region 0- 9105 - CANDIDATE hangs -227 -3083 Test read # 49 ident 407280 2371- 8827 against verified region 0- 9105 - CANDIDATE hangs 283 -3262 Test read # 50 ident 289829 2442- 6964 against verified region 0- 9105 - CANDIDATE hangs 2110 -3306 Test read # 55 ident 618704 2766- 7630 against verified region 0- 9105 - CANDIDATE hangs 1465 -3661 Test read # 56 ident 656951 2913- 9203 against verified region 0- 9105 - CANDIDATE hangs -79 -3831 Test read # 57 ident 100341 2933- 12266 against verified region 0- 9105 - CANDIDATE hangs -3092 -3763 Test read # 59 ident 270999 3355- 13832 against verified region 0- 9105 - CANDIDATE hangs -4626 -4165 Test read # 60 ident 271001 3355- 11730 against verified region 0- 9105 - CANDIDATE hangs -2586 -4170 Test read # 61 ident 271000 3384- 13826 against verified region 0- 9105 - CANDIDATE hangs -4619 -4196 Test read # 62 ident 292991 3417- 13710 against verified region 0- 9105 - CANDIDATE hangs -4500 -4318 Test read # 63 ident 656950 3456- 8768 against verified region 0- 9105 - CANDIDATE hangs 361 -4362 Test read # 64 ident 635380 3471- 9533 against verified region 0- 9105 - CANDIDATE hangs -443 -4299 Test read # 65 ident 635381 3489- 9548 against verified region 0- 9105 - CANDIDATE hangs -456 -4314 Test read # 67 ident 662126 3584- 9318 against verified region 0- 9105 - CANDIDATE hangs -206 -4442 Test read # 68 ident 695220 3635- 11305 against verified region 0- 9105 - CANDIDATE hangs -2157 -4512 Test read # 69 ident 496401 3702- 12824 against verified region 0- 9105 - CANDIDATE hangs -3629 -4527 Test read # 70 ident 675658 3769- 10314 against verified region 0- 9105 - CANDIDATE hangs -1206 -4630 Test read # 71 ident 675657 3769- 10288 against verified region 0- 9105 - CANDIDATE hangs -1186 -4627 Test read # 72 ident 675656 3773- 10277 against verified region 0- 9105 - CANDIDATE hangs -1165 -4631 Test read # 73 ident 675659 3777- 10290 against verified region 0- 9105 - CANDIDATE hangs -1186 -4631 Test read # 74 ident 594076 3780- 10372 against verified region 0- 9105 - CANDIDATE hangs -1267 -4637 Test read # 75 ident 292990 3799- 13699 against verified region 0- 9105 - CANDIDATE hangs -4491 -4632 Test read # 76 ident 223018 3842- 10637 against verified region 0- 9105 - CANDIDATE hangs -1499 -4694 Test read # 77 ident 604843 3886- 13038 against verified region 0- 9105 - CANDIDATE hangs -3847 -4722 Test read # 78 ident 604842 3887- 13751 against verified region 0- 9105 - CANDIDATE hangs -4541 -4723 Test read # 79 ident 355167 4392- 12588 against verified region 0- 9105 - CANDIDATE hangs -3404 -5219 Test read # 80 ident 225545 4440- 11871 against verified region 0- 9105 - CANDIDATE hangs -2716 -5268 Test read # 81 ident 236329 4528- 8218 against verified region 0- 9105 - CANDIDATE hangs 886 -5377 Test read # 82 ident 232971 4884- 11670 against verified region 0- 9105 - CANDIDATE hangs -2520 -5709 Test read # 83 ident 475236 4963- 11652 against verified region 0- 9105 - CANDIDATE hangs -2498 -5785 Test read # 84 ident 312140 5017- 8323 against verified region 0- 9105 - CANDIDATE hangs 790 -5863 Test read # 85 ident 182424 5126- 8029 against verified region 0- 9105 - CANDIDATE hangs 1086 -5971 Test read # 86 ident 175915 5134- 11514 against verified region 0- 9105 - CANDIDATE hangs -2377 -5966 Test read # 87 ident 250397 5154- 10636 against verified region 0- 9105 - CANDIDATE hangs -1495 -5980 Test read # 88 ident 652320 5154- 6967 against verified region 0- 9105 - CANDIDATE hangs 2117 -5992 Test read # 89 ident 594075 5171- 10370 against verified region 0- 9105 - CANDIDATE hangs -1267 -6011 Test read # 90 ident 236330 5251- 6449 against verified region 0- 9105 - CANDIDATE hangs 2626 -6083 Test read # 91 ident 69367 5314- 13700 against verified region 0- 9105 - CANDIDATE hangs -4484 -6122 Test read # 92 ident 201129 5343- 9130 against verified region 0- 9105 - CANDIDATE hangs -16 -6178 Test read # 93 ident 374016 5344- 7370 against verified region 0- 9105 - CANDIDATE hangs 1722 -6182 Test read # 94 ident 202056 5431- 8060 against verified region 0- 9105 - CANDIDATE hangs 1052 -6268 Test read # 95 ident 275658 5442- 7756 against verified region 0- 9105 - CANDIDATE hangs 1337 -6273 Test read # 96 ident 608782 5672- 11407 against verified region 0- 9105 - CANDIDATE hangs -2285 -6544 Test read # 97 ident 635382 5686- 9564 against verified region 0- 9105 - CANDIDATE hangs -451 -6528 Test read # 98 ident 545386 5752- 15886 against verified region 0- 9105 - CANDIDATE hangs -6660 -6560 Test read # 99 ident 545384 5756- 15857 against verified region 0- 9105 - CANDIDATE hangs -6629 -6560 Test read # 100 ident 545385 5757- 15876 against verified region 0- 9105 - CANDIDATE hangs -6647 -6564 Test read # 101 ident 545383 5757- 15874 against verified region 0- 9105 - CANDIDATE hangs -6641 -6565 Test read # 102 ident 545382 5760- 15854 against verified region 0- 9105 - CANDIDATE hangs -6623 -6562 Test read # 103 ident 174136 5815- 8766 against verified region 0- 9105 - CANDIDATE hangs 343 -6652 Test read # 104 ident 545085 5844- 11297 against verified region 0- 9105 - CANDIDATE hangs -2222 -6746 Test read # 105 ident 674381 5877- 9771 against verified region 0- 9105 - CANDIDATE hangs -643 -6696 Test read # 106 ident 545086 5910- 8009 against verified region 0- 9105 - CANDIDATE hangs 1092 -6744 Test read # 107 ident 663523 5961- 9112 against verified region 0- 9105 - CANDIDATE hangs 1 -6791 Test read # 108 ident 219798 5993- 10720 against verified region 0- 9105 - CANDIDATE hangs -1578 -6798 Test read # 109 ident 264061 6037- 12589 against verified region 0- 9105 - CANDIDATE hangs -3407 -6833 Test read # 110 ident 329965 6175- 9733 against verified region 0- 9105 - CANDIDATE hangs -649 -7012 Test read # 111 ident 27244 6213- 8897 against verified region 0- 9105 - CANDIDATE hangs 211 -7038 Test read # 112 ident 219799 6404- 10725 against verified region 0- 9105 - CANDIDATE hangs -1578 -7207 Test read # 113 ident 644515 6570- 9145 against verified region 0- 9105 - CANDIDATE hangs -38 -7388 Test read # 114 ident 219797 6590- 10121 against verified region 0- 9105 - CANDIDATE hangs -986 -7382 Test read # 116 ident 250396 7043- 10528 against verified region 0- 9105 - CANDIDATE hangs -1389 -7846 Test read # 117 ident 537941 7393- 13623 against verified region 0- 9105 - CANDIDATE hangs -4403 -8159 Test read # 118 ident 501994 7638- 9845 against verified region 0- 9105 - CANDIDATE hangs -721 -8435 Test read # 120 ident 632797 8067- 15019 against verified region 0- 9105 - CANDIDATE hangs -5764 -8820 Test read # 121 ident 703303 8367- 10851 against verified region 0- 9105 - CANDIDATE hangs -1692 -9137 Found appropriate intersecting read. createUnitigs()-- read 80005 place 1 edgeTo tig 113080 reads # 0 330227- 703303 verified 9105- 0 position 9105- -876 covered 0- 8959 BREAK at pos 453 read 331845 isLow 1 sim 0.9912 Scan reads from #1 to #1 for high coordinate in verified region 7091-8250 Test read # 1 ident 34068 41- 8250 against verified region 7091- 8250 Failed to find appropriate intersecting read. createUnitigs()-- read 80005 place 2 edgeTo tig 113782 reads # 1 34068- 34068 verified 7091- 8250 position 7091- 17054 covered 0- 1091 NO_OVERLAPS Scan reads from #4 to #4 for high coordinate in verified region 5992-6789 Test read # 4 ident 599836 836- 6789 against verified region 5992- 6789 Failed to find appropriate intersecting read. createUnitigs()-- read 80005 place 3 edgeTo tig 113783 reads # 4 599836- 599836 verified 5992- 6789 position 5992- 15980 covered 0- 704 NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 74 len 13181 first read 424568 with 8 placements - last read 144960 with 5 placements createUnitigs()-- read 424568 place 0 edgeTo tig 74 reads # 2 634002- 584349 verified 825- 2740 position -1265- 2740 covered 1914- 3931 SELF EXPECTED_5' createUnitigs()-- read 424568 place 1 edgeTo tig 74 reads # 1 568372- 568372 verified 569- 4023 position 142- 4078 covered 427- 3876 SELF EXPECTED_5' createUnitigs()-- read 424568 place 2 edgeTo tig 74 reads # 9 14947- 402516 verified 1445- 4795 position 827- 4795 covered 679- 3931 SELF EXPECTED_5' createUnitigs()-- read 424568 place 3 edgeTo tig 74 reads # 33 498708- 686955 verified 2793- 6562 position 2588- 6562 covered 137- 3931 SELF EXPECTED_5' createUnitigs()-- read 424568 place 4 edgeTo tig 74 reads # 14 144961- 209424 verified 3523- 7403 position 3403- 7403 covered 0- 3931 SELF Scan reads from #37 to #40 for high coordinate in verified region 4434-8434 Test read # 37 ident 136472 2918- 11168 against verified region 4434- 8434 Test read # 39 ident 568373 3178- 8266 against verified region 4434- 8434 - CANDIDATE hangs -1101 -11 - SAVED Test read # 40 ident 494521 3283- 8691 against verified region 4434- 8434 Found appropriate intersecting read. createUnitigs()-- read 424568 place 5 edgeTo tig 74 reads # 37 136472- 494521 verified 4434- 8434 position 4434- 8434 covered 0- 3931 BREAK at pos 8266 read 568373 isLow 0 sim 1.0000 Scan reads from #58 to #59 for high coordinate in verified region 5613-9414 Test read # 58 ident 303561 5613- 9644 against verified region 5613- 9414 Test read # 59 ident 494522 7544- 10873 against verified region 5613- 9414 Failed to find appropriate intersecting read. createUnitigs()-- read 424568 place 6 edgeTo tig 74 reads # 58 303561- 494522 verified 5613- 9414 position 5462- 9414 covered 168- 3931 EXPECTED_5' NO_OVERLAPS Scan reads from #45 to #45 for high coordinate in verified region 6017-10019 Test read # 45 ident 144960 3838- 13181 against verified region 6017- 10019 Failed to find appropriate intersecting read. createUnitigs()-- read 424568 place 7 edgeTo tig 74 reads # 45 144960- 144960 verified 6017- 10019 position 6017- 10019 covered 0- 3931 NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #3 to #4 for low coordinate in verified region 917-1726 Test read # 3 ident 670461 917- 8326 against verified region 917- 1726 Test read # 4 ident 621280 969- 8511 against verified region 917- 1726 - CANDIDATE hangs 8386 6600 - SAVED Found appropriate intersecting read. createUnitigs()-- read 144960 place 0 edgeTo tig 74 reads # 3 670461- 621280 verified 917- 1726 position -7609- 1726 covered 8386- 9259 BREAK at pos 969 read 621280 isLow 1 sim 1.0000 Scan reads from #9 to #13 for low coordinate in verified region 1445-3654 Test read # 9 ident 14947 1445- 7079 against verified region 1445- 3654 Test read # 12 ident 310916 1605- 8634 against verified region 1445- 3654 - CANDIDATE hangs -6278 -8587 - SAVED Test read # 13 ident 402516 1619- 6109 against verified region 1445- 3654 - CANDIDATE hangs 7156 2359 Found appropriate intersecting read. createUnitigs()-- read 144960 place 1 edgeTo tig 74 reads # 9 14947- 402516 verified 1445- 3654 position -5646- 3654 covered 7156- 9259 BREAK at pos 1605 read 310916 isLow 1 sim 1.0000 createUnitigs()-- read 144960 place 2 edgeTo tig 74 reads # 0 424568- 303561 verified 930- 10236 position 930- 10236 covered 0- 9259 SELF createUnitigs()-- read 144960 place 3 edgeTo tig 74 reads # 2 634002- 494522 verified 7883- 10873 position 7883- 17223 covered 0- 3254 SELF EXPECTED_3' createUnitigs()-- read 144960 place 4 edgeTo tig 74 reads # 21 583787- 583787 verified 10766- 12783 position 10766- 20097 covered 0- 1945 SELF EXPECTED_3' createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 77 len 50530 first read 377536 with 1 placements - last read 215462 with 1 placements createUnitigs()-- read 377536 place 0 edgeTo tig 77 reads # 1 377534- 338500 verified 19- 7661 position 13- 7661 covered 7- 7636 SELF EXPECTED_5' createUnitigs()-- read 215462 place 0 edgeTo tig 77 reads # 68 47285- 471610 verified 43011- 50529 position 43011- 50530 covered 0- 7460 SELF createUnitigs()-- tig 78 len 11175 first read 454809 with 24 placements - last read 221786 with 1 placements createUnitigs()-- read 454809 place 0 edgeTo tig 78 reads # 1 454806- 193810 verified 11- 5391 position 0- 5391 covered 6- 5377 SELF EXPECTED_5' Scan reads from #0 to #1 for low coordinate in verified region 0-966 Test read # 0 ident 701936 0- 10605 against verified region 0- 966 Test read # 1 ident 701935 37- 11481 against verified region 0- 966 - CANDIDATE hangs -10488 -4494 - SAVED Found appropriate intersecting read. createUnitigs()-- read 454809 place 1 edgeTo tig 712 reads # 0 701936- 701935 verified 966- 0 position 966- -4479 covered 0- 883 NOT_SIMILAR Scan reads from #18 to #20 for low coordinate in verified region 12808-13649 Test read # 18 ident 699476 12808- 18805 against verified region 12808- 13649 Test read # 19 ident 699478 12817- 18846 against verified region 12808- 13649 - CANDIDATE hangs -5199 -4598 - SAVED Test read # 20 ident 699477 12818- 18811 against verified region 12808- 13649 - CANDIDATE hangs -5150 -4593 Found appropriate intersecting read. createUnitigs()-- read 454809 place 2 edgeTo tig 821 reads # 18 699476- 699477 verified 13649- 12808 position 13649- 8220 covered 0- 785 BREAK at pos 12817 read 699478 isLow 1 sim 1.0000 Scan reads from #0 to #0 for low coordinate in verified region 0-1072 Test read # 0 ident 537046 0- 8063 against verified region 0- 1072 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 3 edgeTo tig 1481 reads # 0 537046- 537046 verified 1072- 0 position 1072- -4496 covered 0- 881 NO_OVERLAPS NOT_SIMILAR Scan reads from #20 to #166 for high coordinate in verified region 18215-19208 Test read # 20 ident 643656 13443- 18922 against verified region 18215- 19208 - CANDIDATE hangs -4786 -4750 - SAVED Test read # 25 ident 255742 13444- 19177 against verified region 18215- 19208 - CANDIDATE hangs -4781 -4500 - SAVED Test read # 38 ident 338730 13447- 19178 against verified region 18215- 19208 - CANDIDATE hangs -4766 -4497 - SAVED Test read # 42 ident 631478 13448- 19174 against verified region 18215- 19208 - CANDIDATE hangs -4763 -4499 Test read # 47 ident 335125 13449- 19170 against verified region 18215- 19208 - CANDIDATE hangs -4764 -4500 Test read # 54 ident 667202 13450- 19208 against verified region 18215- 19208 Test read # 58 ident 23987 13450- 19170 against verified region 18215- 19208 - CANDIDATE hangs -4771 -4504 Test read # 59 ident 525349 13450- 19169 against verified region 18215- 19208 - CANDIDATE hangs -4774 -4505 Test read # 61 ident 196093 13450- 19165 against verified region 18215- 19208 - CANDIDATE hangs -4762 -4503 Test read # 64 ident 640659 13451- 19174 against verified region 18215- 19208 - CANDIDATE hangs -4753 -4498 Test read # 65 ident 649784 13451- 19174 against verified region 18215- 19208 - CANDIDATE hangs -4769 -4498 Test read # 67 ident 689522 13451- 19173 against verified region 18215- 19208 - CANDIDATE hangs -4769 -4503 Test read # 68 ident 306862 13451- 19171 against verified region 18215- 19208 - CANDIDATE hangs -4754 -4499 Test read # 72 ident 608182 13451- 18873 against verified region 18215- 19208 - CANDIDATE hangs -4769 -4796 Test read # 81 ident 607254 13452- 19158 against verified region 18215- 19208 - CANDIDATE hangs -4768 -4513 Test read # 84 ident 610904 13453- 19182 against verified region 18215- 19208 - CANDIDATE hangs -4765 -4495 - SAVED Test read # 91 ident 176593 13453- 19149 against verified region 18215- 19208 - CANDIDATE hangs -4752 -4520 Test read # 100 ident 359379 13454- 19175 against verified region 18215- 19208 - CANDIDATE hangs -4757 -4500 Test read # 102 ident 110951 13455- 19176 against verified region 18215- 19208 - CANDIDATE hangs -4756 -4499 Test read # 104 ident 528123 13455- 19173 against verified region 18215- 19208 - CANDIDATE hangs -4762 -4502 Test read # 111 ident 181098 13458- 19190 against verified region 18215- 19208 - CANDIDATE hangs -4752 -4482 - SAVED Test read # 114 ident 173508 13459- 19168 against verified region 18215- 19208 - CANDIDATE hangs -4737 -4500 Test read # 116 ident 691089 13460- 19170 against verified region 18215- 19208 - CANDIDATE hangs -4734 -4499 Test read # 117 ident 187893 13460- 19164 against verified region 18215- 19208 - CANDIDATE hangs -4740 -4500 Test read # 118 ident 640733 13461- 19178 against verified region 18215- 19208 - CANDIDATE hangs -4751 -4499 Test read # 119 ident 145796 13461- 19165 against verified region 18215- 19208 - CANDIDATE hangs -4744 -4501 Test read # 124 ident 514998 13480- 19169 against verified region 18215- 19208 - CANDIDATE hangs -4734 -4503 Test read # 125 ident 612517 13481- 18998 against verified region 18215- 19208 - CANDIDATE hangs -4739 -4673 Test read # 126 ident 431143 13485- 19174 against verified region 18215- 19208 - CANDIDATE hangs -4733 -4501 Test read # 127 ident 651979 13497- 19166 against verified region 18215- 19208 - CANDIDATE hangs -4724 -4502 Test read # 128 ident 321895 13499- 18836 against verified region 18215- 19208 - CANDIDATE hangs -4698 -4829 Test read # 130 ident 364659 13537- 19169 against verified region 18215- 19208 - CANDIDATE hangs -4685 -4503 Test read # 134 ident 661676 13553- 19170 against verified region 18215- 19208 - CANDIDATE hangs -4666 -4504 Test read # 141 ident 699046 13680- 19169 against verified region 18215- 19208 - CANDIDATE hangs -4526 -4502 Test read # 146 ident 373495 13916- 19172 against verified region 18215- 19208 - CANDIDATE hangs -4305 -4498 Test read # 148 ident 279144 14126- 19169 against verified region 18215- 19208 - CANDIDATE hangs -4080 -4499 Test read # 149 ident 136151 14174- 19165 against verified region 18215- 19208 - CANDIDATE hangs -4052 -4506 Test read # 153 ident 473719 14282- 19172 against verified region 18215- 19208 - CANDIDATE hangs -3955 -4505 Test read # 154 ident 210484 14343- 19168 against verified region 18215- 19208 - CANDIDATE hangs -3872 -4504 Test read # 155 ident 552870 14353- 18974 against verified region 18215- 19208 - CANDIDATE hangs -3871 -4699 Test read # 158 ident 136934 14626- 19177 against verified region 18215- 19208 - CANDIDATE hangs -3592 -4494 Test read # 159 ident 486996 14701- 19176 against verified region 18215- 19208 - CANDIDATE hangs -3528 -4499 Test read # 160 ident 82024 14715- 19175 against verified region 18215- 19208 - CANDIDATE hangs -3507 -4499 Test read # 163 ident 513504 14906- 19171 against verified region 18215- 19208 - CANDIDATE hangs -3313 -4503 Test read # 164 ident 283346 14919- 19171 against verified region 18215- 19208 - CANDIDATE hangs -3301 -4499 Test read # 166 ident 710495 14963- 19161 against verified region 18215- 19208 - CANDIDATE hangs -3273 -4515 Found appropriate intersecting read. createUnitigs()-- read 454809 place 4 edgeTo tig 2030 reads # 20 643656- 710495 verified 18215- 19208 position 18215- 23672 covered 0- 908 BREAK at pos 19190 read 181098 isLow 0 sim 1.0000 Scan reads from #57 to #67 for low coordinate in verified region 13462-14386 Test read # 57 ident 19213 13462- 14641 against verified region 13462- 14386 Test read # 67 ident 17766 13511- 15632 against verified region 13462- 14386 - CANDIDATE hangs -1246 -4553 - SAVED Found appropriate intersecting read. createUnitigs()-- read 454809 place 5 edgeTo tig 2396 reads # 57 19213- 17766 verified 14386- 13462 position 14386- 8958 covered 0- 873 BREAK at pos 13511 read 17766 isLow 1 sim 1.0000 Scan reads from #0 to #8 for high coordinate in verified region 7056-8018 Test read # 0 ident 498472 0- 7985 against verified region 7056- 8018 - CANDIDATE hangs -7058 -4503 - SAVED Test read # 1 ident 498473 79- 8018 against verified region 7056- 8018 Test read # 8 ident 288536 2312- 7801 against verified region 7056- 8018 - CANDIDATE hangs -4737 -4674 Found appropriate intersecting read. createUnitigs()-- read 454809 place 6 edgeTo tig 3214 reads # 0 498472- 288536 verified 7056- 8018 position 7056- 12483 covered 0- 907 NOT_SIMILAR Scan reads from #3 to #4 for high coordinate in verified region 644-1539 Test read # 3 ident 310440 173- 1539 against verified region 644- 1539 Test read # 4 ident 222997 344- 1539 against verified region 644- 1539 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 7 edgeTo tig 4054 reads # 3 310440- 222997 verified 644- 1539 position 644- 6042 covered 0- 874 NO_OVERLAPS Scan reads from #2 to #4 for high coordinate in verified region 3143-4107 Test read # 2 ident 61084 223- 4107 against verified region 3143- 4107 Test read # 3 ident 694046 229- 4094 against verified region 3143- 4107 - CANDIDATE hangs -2902 -4503 - SAVED Test read # 4 ident 138055 234- 4099 against verified region 3143- 4107 - CANDIDATE hangs -2896 -4494 - SAVED Found appropriate intersecting read. createUnitigs()-- read 454809 place 8 edgeTo tig 5269 reads # 2 61084- 138055 verified 3143- 4107 position 3143- 8598 covered 0- 883 BREAK at pos 4099 read 138055 isLow 0 sim 1.0000 Scan reads from #12 to #21 for low coordinate in verified region 6111-7035 Test read # 12 ident 339721 6111- 10032 against verified region 6111- 7035 Test read # 14 ident 124170 6115- 9427 against verified region 6111- 7035 - CANDIDATE hangs -2400 -4501 - SAVED Test read # 16 ident 209563 6118- 9927 against verified region 6111- 7035 - CANDIDATE hangs -2897 -4498 Test read # 20 ident 692753 6123- 10163 against verified region 6111- 7035 - CANDIDATE hangs -3128 -4505 Test read # 21 ident 13233 6135- 9705 against verified region 6111- 7035 - CANDIDATE hangs -2655 -4512 Found appropriate intersecting read. createUnitigs()-- read 454809 place 9 edgeTo tig 9650 reads # 12 339721- 13233 verified 7035- 6111 position 7035- 1618 covered 0- 881 BREAK at pos 6115 read 124170 isLow 1 sim 0.9989 Scan reads from #15 to #20 for low coordinate in verified region 9521-10463 Test read # 15 ident 535932 9521- 13474 against verified region 9521- 10463 Test read # 17 ident 120573 9531- 16915 against verified region 9521- 10463 - CANDIDATE hangs -6434 -4504 - SAVED Test read # 20 ident 546158 9668- 14213 against verified region 9521- 10463 - CANDIDATE hangs -3766 -4644 Found appropriate intersecting read. createUnitigs()-- read 454809 place 10 edgeTo tig 10779 reads # 15 535932- 546158 verified 10463- 9521 position 10463- 5024 covered 0- 877 BREAK at pos 9531 read 120573 isLow 1 sim 1.0000 Scan reads from #6 to #6 for high coordinate in verified region 4755-5653 Test read # 6 ident 207352 1865- 5653 against verified region 4755- 5653 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 11 edgeTo tig 39024 reads # 6 207352- 207352 verified 4755- 5653 position 4755- 10152 covered 0- 878 NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 8024-9046 Test read # 0 ident 112243 0- 9046 against verified region 8024- 9046 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 12 edgeTo tig 113151 reads # 0 112243- 112243 verified 8024- 9046 position 8024- 13540 covered 0- 883 NO_OVERLAPS NOT_SIMILAR Scan reads from #39 to #128 for low coordinate in verified region 4364-5410 Test read # 39 ident 111149 4364- 10191 against verified region 4364- 5410 Test read # 42 ident 111150 4369- 10202 against verified region 4364- 5410 - CANDIDATE hangs -4721 -4482 - SAVED Test read # 64 ident 225557 4390- 6882 against verified region 4364- 5410 - CANDIDATE hangs -1530 -4501 Test read # 65 ident 108969 4390- 6804 against verified region 4364- 5410 - CANDIDATE hangs -1450 -4503 Test read # 67 ident 32672 4390- 5649 against verified region 4364- 5410 - CANDIDATE hangs -336 -4500 Test read # 69 ident 131516 4392- 10936 against verified region 4364- 5410 - CANDIDATE hangs -5456 -4509 Test read # 74 ident 597346 4393- 6774 against verified region 4364- 5410 - CANDIDATE hangs -1404 -4503 Test read # 76 ident 448834 4396- 6066 against verified region 4364- 5410 - CANDIDATE hangs -730 -4504 Test read # 78 ident 185213 4398- 6653 against verified region 4364- 5410 - CANDIDATE hangs -1293 -4501 Test read # 84 ident 193284 4403- 10622 against verified region 4364- 5410 - CANDIDATE hangs -5121 -4506 Test read # 88 ident 132085 4405- 7031 against verified region 4364- 5410 - CANDIDATE hangs -1652 -4514 Test read # 90 ident 585986 4406- 10922 against verified region 4364- 5410 - CANDIDATE hangs -5395 -4497 Test read # 93 ident 203425 4408- 5662 against verified region 4364- 5410 - CANDIDATE hangs -339 -4513 Test read # 97 ident 282020 4415- 10241 against verified region 4364- 5410 - CANDIDATE hangs -4724 -4514 Test read # 98 ident 43587 4418- 8445 against verified region 4364- 5410 - CANDIDATE hangs -2951 -4508 Test read # 103 ident 253294 4426- 10222 against verified region 4364- 5410 - CANDIDATE hangs -4694 -4507 Test read # 106 ident 173529 4438- 10260 against verified region 4364- 5410 - CANDIDATE hangs -4824 -4569 Test read # 110 ident 578129 4451- 6711 against verified region 4364- 5410 - CANDIDATE hangs -1348 -4556 Test read # 114 ident 149850 4482- 5839 against verified region 4364- 5410 - CANDIDATE hangs -519 -4583 Test read # 117 ident 132120 4516- 6200 against verified region 4364- 5410 - CANDIDATE hangs -883 -4624 Test read # 128 ident 719340 4751- 7906 against verified region 4364- 5410 - CANDIDATE hangs -2504 -4849 Found appropriate intersecting read. createUnitigs()-- read 454809 place 13 edgeTo tig 113181 reads # 39 111149- 719340 verified 5410- 4364 position 5410- -105 covered 0- 895 BREAK at pos 4369 read 111150 isLow 1 sim 1.0000 Scan reads from #1 to #114 for high coordinate in verified region 4829-5824 Test read # 1 ident 663816 14- 5822 against verified region 4829- 5824 - CANDIDATE hangs -4830 -4498 - SAVED Test read # 3 ident 668099 25- 5814 against verified region 4829- 5824 - CANDIDATE hangs -4788 -4503 Test read # 4 ident 282019 27- 5820 against verified region 4829- 5824 - CANDIDATE hangs -4809 -4499 Test read # 9 ident 628858 40- 5803 against verified region 4829- 5824 - CANDIDATE hangs -4765 -4516 Test read # 15 ident 636398 54- 5790 against verified region 4829- 5824 - CANDIDATE hangs -4698 -4501 Test read # 19 ident 121554 61- 5796 against verified region 4829- 5824 - CANDIDATE hangs -4713 -4505 Test read # 36 ident 197477 251- 5810 against verified region 4829- 5824 - CANDIDATE hangs -4566 -4502 Test read # 37 ident 699047 277- 5804 against verified region 4829- 5824 - CANDIDATE hangs -4520 -4499 Test read # 42 ident 43586 377- 5799 against verified region 4829- 5824 - CANDIDATE hangs -4379 -4496 Test read # 48 ident 165697 425- 5797 against verified region 4829- 5824 - CANDIDATE hangs -4389 -4516 Test read # 49 ident 98890 433- 5791 against verified region 4829- 5824 - CANDIDATE hangs -4365 -4518 Test read # 52 ident 252115 507- 5816 against verified region 4829- 5824 - CANDIDATE hangs -4309 -4496 Test read # 54 ident 508104 512- 5786 against verified region 4829- 5824 - CANDIDATE hangs -4243 -4501 Test read # 57 ident 627829 684- 5824 against verified region 4829- 5824 Test read # 59 ident 491559 720- 5807 against verified region 4829- 5824 - CANDIDATE hangs -4075 -4500 Test read # 60 ident 308469 755- 5479 against verified region 4829- 5824 - CANDIDATE hangs -4081 -4830 Test read # 62 ident 136150 764- 5814 against verified region 4829- 5824 - CANDIDATE hangs -4050 -4499 Test read # 65 ident 553534 786- 5817 against verified region 4829- 5824 - CANDIDATE hangs -4037 -4500 Test read # 69 ident 111148 951- 5811 against verified region 4829- 5824 - CANDIDATE hangs -3911 -4516 Test read # 70 ident 702607 964- 5817 against verified region 4829- 5824 - CANDIDATE hangs -3895 -4496 Test read # 74 ident 676741 1061- 5808 against verified region 4829- 5824 - CANDIDATE hangs -3764 -4500 Test read # 75 ident 158408 1075- 5810 against verified region 4829- 5824 - CANDIDATE hangs -3760 -4504 Test read # 78 ident 221868 1236- 5797 against verified region 4829- 5824 - CANDIDATE hangs -3670 -4535 Test read # 80 ident 136066 1278- 5813 against verified region 4829- 5824 - CANDIDATE hangs -3562 -4500 Test read # 81 ident 82025 1299- 5815 against verified region 4829- 5824 - CANDIDATE hangs -3533 -4498 Test read # 91 ident 275433 1635- 5818 against verified region 4829- 5824 - CANDIDATE hangs -3235 -4499 Test read # 93 ident 136340 1793- 5812 against verified region 4829- 5824 - CANDIDATE hangs -3123 -4522 Test read # 99 ident 89330 2172- 5814 against verified region 4829- 5824 - CANDIDATE hangs -2694 -4503 Test read # 103 ident 450637 2413- 5808 against verified region 4829- 5824 - CANDIDATE hangs -2427 -4498 Test read # 104 ident 467058 2460- 5806 against verified region 4829- 5824 - CANDIDATE hangs -2398 -4504 Test read # 110 ident 611090 2716- 5821 against verified region 4829- 5824 - CANDIDATE hangs -2126 -4494 Test read # 114 ident 219948 3676- 5808 against verified region 4829- 5824 - CANDIDATE hangs -1202 -4500 Found appropriate intersecting read. createUnitigs()-- read 454809 place 14 edgeTo tig 113460 reads # 1 663816- 219948 verified 4829- 5824 position 4829- 10312 covered 0- 883 BREAK at pos 5822 read 663816 isLow 0 sim 1.0000 Scan reads from #0 to #0 for low coordinate in verified region 0-869 Test read # 0 ident 451936 0- 1668 against verified region 0- 869 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 15 edgeTo tig 113522 reads # 0 451936- 451936 verified 869- 0 position 869- -4516 covered 0- 861 NO_OVERLAPS Scan reads from #8 to #54 for low coordinate in verified region 291-1304 Test read # 8 ident 626609 291- 6106 against verified region 291- 1304 Test read # 9 ident 399130 292- 5203 against verified region 291- 1304 - CANDIDATE hangs -3909 -4499 - SAVED Test read # 10 ident 216347 293- 4593 against verified region 291- 1304 - CANDIDATE hangs -3297 -4498 Test read # 13 ident 451646 295- 4844 against verified region 291- 1304 - CANDIDATE hangs -3520 -4496 Test read # 16 ident 99267 297- 6032 against verified region 291- 1304 - CANDIDATE hangs -4708 -4500 Test read # 18 ident 431141 300- 6123 against verified region 291- 1304 - CANDIDATE hangs -4803 -4504 Test read # 22 ident 83747 302- 4864 against verified region 291- 1304 - CANDIDATE hangs -3540 -4500 Test read # 23 ident 355880 302- 4654 against verified region 291- 1304 - CANDIDATE hangs -3331 -4495 Test read # 24 ident 455645 302- 1864 against verified region 291- 1304 - CANDIDATE hangs -622 -4501 Test read # 26 ident 470760 304- 3370 against verified region 291- 1304 - CANDIDATE hangs -2068 -4502 Test read # 29 ident 355879 305- 3915 against verified region 291- 1304 - CANDIDATE hangs -2635 -4510 Test read # 33 ident 251641 306- 4601 against verified region 291- 1304 - CANDIDATE hangs -3270 -4502 Test read # 36 ident 520614 306- 2248 against verified region 291- 1304 - CANDIDATE hangs -994 -4499 Test read # 40 ident 439029 308- 5945 against verified region 291- 1304 - CANDIDATE hangs -4606 -4503 Test read # 41 ident 232276 308- 4931 against verified region 291- 1304 - CANDIDATE hangs -3597 -4500 Test read # 42 ident 644661 308- 3759 against verified region 291- 1304 - CANDIDATE hangs -2468 -4510 Test read # 44 ident 585104 309- 2024 against verified region 291- 1304 - CANDIDATE hangs -776 -4508 Test read # 48 ident 697014 311- 5068 against verified region 291- 1304 - CANDIDATE hangs -3725 -4504 Test read # 51 ident 691090 319- 6070 against verified region 291- 1304 - CANDIDATE hangs -4711 -4507 Test read # 52 ident 159479 323- 3493 against verified region 291- 1304 - CANDIDATE hangs -2179 -4518 Test read # 53 ident 36948 324- 4122 against verified region 291- 1304 - CANDIDATE hangs -2820 -4520 Test read # 54 ident 607788 324- 1879 against verified region 291- 1304 - CANDIDATE hangs -639 -4523 Found appropriate intersecting read. createUnitigs()-- read 454809 place 16 edgeTo tig 113532 reads # 8 626609- 607788 verified 1304- 291 position 1304- -4198 covered 0- 882 BREAK at pos 292 read 399130 isLow 1 sim 1.0000 Scan reads from #15 to #15 for high coordinate in verified region 14885-15814 Test read # 15 ident 338205 8846- 15814 against verified region 14885- 15814 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 17 edgeTo tig 113535 reads # 15 338205- 338205 verified 14885- 15814 position 14885- 20330 covered 0- 861 NO_OVERLAPS NOT_SIMILAR Scan reads from #10 to #10 for high coordinate in verified region 10185-11135 Test read # 10 ident 230758 3434- 11135 against verified region 10185- 11135 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 18 edgeTo tig 113581 reads # 10 230758- 230758 verified 10185- 11135 position 10185- 15631 covered 0- 881 NO_OVERLAPS Scan reads from #3 to #3 for high coordinate in verified region 2951-3856 Test read # 3 ident 593732 722- 3856 against verified region 2951- 3856 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 19 edgeTo tig 113582 reads # 3 593732- 593732 verified 2951- 3856 position 2951- 8360 covered 0- 873 NO_OVERLAPS Scan reads from #1 to #5 for high coordinate in verified region 4778-5713 Test read # 1 ident 354842 1- 5688 against verified region 4778- 5713 - CANDIDATE hangs -4748 -4517 - SAVED Test read # 5 ident 79202 1813- 5713 against verified region 4778- 5713 Found appropriate intersecting read. createUnitigs()-- read 454809 place 20 edgeTo tig 113770 reads # 1 354842- 79202 verified 4778- 5713 position 4778- 10209 covered 0- 876 BREAK at pos 5688 read 354842 isLow 0 sim 0.9701 Scan reads from #28 to #36 for high coordinate in verified region 28601-29590 Test read # 28 ident 61530 18799- 29590 against verified region 28601- 29590 Test read # 36 ident 367716 26275- 29581 against verified region 28601- 29590 - CANDIDATE hangs -2359 -4496 - SAVED Found appropriate intersecting read. createUnitigs()-- read 454809 place 21 edgeTo tig 582069 reads # 28 61530- 367716 verified 28601- 29590 position 28601- 34066 covered 0- 912 BREAK at pos 29581 read 367716 isLow 0 sim 1.0000 Scan reads from #1 to #3 for low coordinate in verified region 1-1132 Test read # 1 ident 340261 1- 7637 against verified region 1- 1132 Test read # 3 ident 340264 27- 7601 against verified region 1- 1132 - CANDIDATE hangs -6474 -4498 - SAVED Found appropriate intersecting read. createUnitigs()-- read 454809 place 22 edgeTo tig 584111 reads # 1 340261- 340264 verified 1132- 1 position 1132- -4475 covered 0- 896 NOT_SIMILAR Scan reads from #0 to #0 for low coordinate in verified region 0-1096 Test read # 0 ident 340263 0- 7621 against verified region 0- 1096 Failed to find appropriate intersecting read. createUnitigs()-- read 454809 place 23 edgeTo tig 584112 reads # 0 340263- 340263 verified 1096- 0 position 1096- -4503 covered 0- 874 NO_OVERLAPS createUnitigs()-- discarding 11 breakpoints. createUnitigs()-- read 221786 place 0 edgeTo tig 78 reads # 1 454806- 20593 verified 5106- 11020 position 5106- 11171 covered 0- 5907 SELF EXPECTED_3' createUnitigs()-- tig 82 len 53925 first read 287803 with 1 placements - last read 509908 with 3 placements createUnitigs()-- read 287803 place 0 edgeTo tig 82 reads # 1 480581- 287804 verified 1932- 5529 position 2- 5529 covered 1978- 5459 SELF EXPECTED_5' createUnitigs()-- read 509908 place 0 edgeTo tig 82 reads # 63 568357- 264323 verified 53738- 41057 position 53906- 41057 covered 170- 12858 SELF EXPECTED_5' Scan reads from #13 to #13 for low coordinate in verified region 6021-6944 Test read # 13 ident 714716 4137- 6944 against verified region 6021- 6944 Failed to find appropriate intersecting read. createUnitigs()-- read 509908 place 1 edgeTo tig 3887 reads # 13 714716- 714716 verified 6944- 6021 position 18906- 6021 covered 11962- 12858 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #4 for high coordinate in verified region 238-1121 Test read # 2 ident 79028 238- 3625 against verified region 238- 1121 Test read # 3 ident 79029 267- 3120 against verified region 238- 1121 Test read # 4 ident 366089 278- 2590 against verified region 238- 1121 Failed to find appropriate intersecting read. createUnitigs()-- read 509908 place 2 edgeTo tig 113295 reads # 2 79028- 366089 verified 238- 1121 position -11771- 1121 covered 12010- 12858 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 84 len 35302 first read 316973 with 1 placements - last read 204200 with 2 placements createUnitigs()-- read 316973 place 0 edgeTo tig 84 reads # 1 639885- 587739 verified 947- 3930 position 4- 3930 covered 938- 3913 SELF EXPECTED_5' createUnitigs()-- read 204200 place 0 edgeTo tig 84 reads # 56 669194- 204199 verified 35285- 26178 position 35285- 26178 covered 7- 9085 SELF EXPECTED_5' Scan reads from #10 to #10 for high coordinate in verified region 4506-5599 Test read # 10 ident 665147 4506- 5599 against verified region 4506- 5599 Failed to find appropriate intersecting read. createUnitigs()-- read 204200 place 1 edgeTo tig 8268 reads # 10 665147- 665147 verified 4506- 5599 position -728- 8383 covered 5234- 6301 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 87 len 28226 first read 356025 with 1 placements - last read 471842 with 2 placements createUnitigs()-- read 356025 place 0 edgeTo tig 87 reads # 1 356024- 665861 verified 108- 4014 position 12- 4014 covered 105- 3987 SELF EXPECTED_5' createUnitigs()-- read 471842 place 0 edgeTo tig 87 reads # 36 163535- 326704 verified 28225- 22644 position 28230- 22644 covered 4- 5511 SELF EXPECTED_5' Scan reads from #0 to #9 for high coordinate in verified region 0-4096 Test read # 0 ident 688006 0- 9739 against verified region 0- 4096 Test read # 1 ident 688005 1- 9869 against verified region 0- 4096 Test read # 2 ident 688007 1- 3250 against verified region 0- 4096 - CANDIDATE hangs 1562 -838 Test read # 3 ident 140707 250- 3159 against verified region 0- 4096 - CANDIDATE hangs 1813 -932 Test read # 4 ident 527675 317- 1936 against verified region 0- 4096 - CANDIDATE hangs 1877 -2063 Test read # 5 ident 140709 321- 7636 against verified region 0- 4096 Test read # 6 ident 140708 429- 7599 against verified region 0- 4096 Test read # 7 ident 140710 525- 7450 against verified region 0- 4096 Test read # 9 ident 568974 2002- 5060 against verified region 0- 4096 Failed to find appropriate intersecting read. createUnitigs()-- read 471842 place 1 edgeTo tig 14248 reads # 0 688006- 568974 verified 0- 4096 position -1546- 4096 covered 1558- 5511 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 88 len 34454 first read 537902 with 1 placements - last read 140145 with 3 placements createUnitigs()-- read 537902 place 0 edgeTo tig 88 reads # 1 537900- 393437 verified 12- 10822 position 12- 10822 covered 0- 10748 SELF createUnitigs()-- read 140145 place 0 edgeTo tig 88 reads # 12 393439- 201438 verified 17089- 34444 position 17089- 34447 covered 0- 17340 SELF EXPECTED_3' Scan reads from #2 to #2 for low coordinate in verified region 13549-14554 Test read # 2 ident 16726 81- 14554 against verified region 13549- 14554 Failed to find appropriate intersecting read. createUnitigs()-- read 140145 place 1 edgeTo tig 216 reads # 2 16726- 16726 verified 13549- 14554 position 13549- 30969 covered 0- 935 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #240 for low coordinate in verified region 4871-20097 Test read # 0 ident 518374 0- 12623 against verified region 4871- 20097 Test read # 1 ident 665218 4759- 8732 against verified region 4871- 20097 Test read # 2 ident 629273 4829- 8615 against verified region 4871- 20097 Test read # 3 ident 478902 4846- 9466 against verified region 4871- 20097 Test read # 4 ident 717548 4848- 9678 against verified region 4871- 20097 Test read # 5 ident 622701 4850- 7670 against verified region 4871- 20097 Test read # 6 ident 545710 4852- 6304 against verified region 4871- 20097 Test read # 7 ident 169479 4854- 10688 against verified region 4871- 20097 Test read # 8 ident 510488 4859- 10028 against verified region 4871- 20097 Test read # 9 ident 631550 4860- 9517 against verified region 4871- 20097 Test read # 10 ident 118873 4862- 9380 against verified region 4871- 20097 Test read # 11 ident 147804 4863- 8845 against verified region 4871- 20097 Test read # 12 ident 345375 4863- 8784 against verified region 4871- 20097 Test read # 13 ident 565797 4863- 8409 against verified region 4871- 20097 Test read # 14 ident 150019 4864- 11267 against verified region 4871- 20097 Test read # 15 ident 124275 4864- 10051 against verified region 4871- 20097 Test read # 16 ident 665219 4864- 8713 against verified region 4871- 20097 Test read # 17 ident 656571 4864- 8208 against verified region 4871- 20097 Test read # 18 ident 553595 4865- 8874 against verified region 4871- 20097 Test read # 19 ident 426192 4865- 8625 against verified region 4871- 20097 Test read # 20 ident 665132 4866- 9542 against verified region 4871- 20097 Test read # 21 ident 483187 4867- 11079 against verified region 4871- 20097 Test read # 22 ident 430950 4869- 12247 against verified region 4871- 20097 Test read # 23 ident 430949 4869- 12226 against verified region 4871- 20097 Test read # 24 ident 240987 4869- 10912 against verified region 4871- 20097 Test read # 25 ident 123828 4870- 11852 against verified region 4871- 20097 Test read # 26 ident 257767 4870- 10407 against verified region 4871- 20097 Test read # 27 ident 374454 4871- 12042 against verified region 4871- 20097 Test read # 28 ident 620852 4874- 8955 against verified region 4871- 20097 - CANDIDATE hangs -1 -13329 Test read # 29 ident 529418 4875- 8425 against verified region 4871- 20097 - CANDIDATE hangs 6 -13859 Test read # 30 ident 378532 4878- 12757 against verified region 4871- 20097 - CANDIDATE hangs -9 -9534 Test read # 31 ident 88648 4889- 9501 against verified region 4871- 20097 - CANDIDATE hangs 22 -12800 Test read # 32 ident 179995 4899- 10260 against verified region 4871- 20097 - CANDIDATE hangs 23 -12037 Test read # 33 ident 65975 4907- 6231 against verified region 4871- 20097 - CANDIDATE hangs 34 -16027 Test read # 34 ident 131532 4913- 6433 against verified region 4871- 20097 - CANDIDATE hangs 45 -15832 Test read # 35 ident 69049 4950- 8834 against verified region 4871- 20097 - CANDIDATE hangs 75 -13450 Test read # 36 ident 453658 5056- 7240 against verified region 4871- 20097 - CANDIDATE hangs 183 -15029 Test read # 37 ident 370899 5065- 7255 against verified region 4871- 20097 - CANDIDATE hangs 185 -15010 Test read # 38 ident 370898 5066- 7247 against verified region 4871- 20097 - CANDIDATE hangs 185 -15017 Test read # 39 ident 172133 5125- 12561 against verified region 4871- 20097 - CANDIDATE hangs 236 -9738 Test read # 40 ident 620853 5328- 8936 against verified region 4871- 20097 - CANDIDATE hangs 453 -13362 Test read # 41 ident 469633 5396- 11151 against verified region 4871- 20097 - CANDIDATE hangs 499 -11144 Test read # 42 ident 567914 5431- 8956 against verified region 4871- 20097 - CANDIDATE hangs 543 -13332 Test read # 43 ident 131904 5481- 9442 against verified region 4871- 20097 - CANDIDATE hangs 600 -12866 Test read # 44 ident 80109 5602- 9639 against verified region 4871- 20097 - CANDIDATE hangs 711 -12648 Test read # 45 ident 172130 5736- 12552 against verified region 4871- 20097 - CANDIDATE hangs 841 -9754 Test read # 46 ident 274984 5746- 9618 against verified region 4871- 20097 - CANDIDATE hangs 850 -12669 Test read # 47 ident 573651 5802- 11465 against verified region 4871- 20097 - CANDIDATE hangs 892 -10821 Test read # 48 ident 635945 5897- 10298 against verified region 4871- 20097 - CANDIDATE hangs 1000 -11999 Test read # 49 ident 176082 6199- 10616 against verified region 4871- 20097 - CANDIDATE hangs 1297 -11683 Test read # 50 ident 256587 6449- 10036 against verified region 4871- 20097 - CANDIDATE hangs 1538 -12258 Test read # 51 ident 577241 6472- 12425 against verified region 4871- 20097 - CANDIDATE hangs 1560 -9885 Test read # 52 ident 86519 6601- 9000 against verified region 4871- 20097 - CANDIDATE hangs 1695 -13292 Test read # 53 ident 230232 6678- 12307 against verified region 4871- 20097 - CANDIDATE hangs 1754 -9974 Test read # 54 ident 179996 6847- 10262 against verified region 4871- 20097 - CANDIDATE hangs 1935 -12034 Test read # 55 ident 521255 7452- 12399 against verified region 4871- 20097 - CANDIDATE hangs 2527 -9919 Test read # 56 ident 229676 8442- 10421 against verified region 4871- 20097 - CANDIDATE hangs 3520 -11892 Test read # 61 ident 636847 11690- 21661 against verified region 4871- 20097 - CANDIDATE hangs 9147 1590 - SAVED Test read # 62 ident 636848 11695- 21664 against verified region 4871- 20097 - CANDIDATE hangs 9144 1594 Test read # 63 ident 463971 11738- 20384 against verified region 4871- 20097 - CANDIDATE hangs 9185 323 Test read # 64 ident 357715 11764- 19153 against verified region 4871- 20097 - CANDIDATE hangs 9197 -878 Test read # 65 ident 483431 11838- 16797 against verified region 4871- 20097 - CANDIDATE hangs 9281 -3189 Test read # 66 ident 331026 11839- 21876 against verified region 4871- 20097 - CANDIDATE hangs 9292 1804 Test read # 67 ident 504616 11875- 15180 against verified region 4871- 20097 - CANDIDATE hangs 9329 -4776 Test read # 68 ident 331027 11910- 18598 against verified region 4871- 20097 - CANDIDATE hangs 9365 -1422 Test read # 69 ident 483434 11910- 16800 against verified region 4871- 20097 - CANDIDATE hangs 9354 -3186 Test read # 70 ident 636846 11988- 21659 against verified region 4871- 20097 - CANDIDATE hangs 9438 1588 Test read # 71 ident 451467 12069- 14838 against verified region 4871- 20097 - CANDIDATE hangs 9503 -5106 Test read # 72 ident 697985 12070- 15409 against verified region 4871- 20097 - CANDIDATE hangs 9538 -4560 Test read # 73 ident 408855 12203- 17855 against verified region 4871- 20097 - CANDIDATE hangs 9659 -2158 Test read # 74 ident 287151 12246- 21406 against verified region 4871- 20097 - CANDIDATE hangs 9693 1333 Test read # 75 ident 36737 12248- 17570 against verified region 4871- 20097 - CANDIDATE hangs 9721 -2421 Test read # 76 ident 564877 12357- 14172 against verified region 4871- 20097 - CANDIDATE hangs 9778 -5754 Test read # 77 ident 369625 12498- 19320 against verified region 4871- 20097 - CANDIDATE hangs 9916 -712 Test read # 78 ident 148905 12530- 14433 against verified region 4871- 20097 - CANDIDATE hangs 9986 -5503 Test read # 79 ident 182299 12665- 14730 against verified region 4871- 20097 - CANDIDATE hangs 10110 -5214 Test read # 80 ident 238526 12693- 18480 against verified region 4871- 20097 - CANDIDATE hangs 10098 -1527 Test read # 81 ident 148904 12706- 13898 against verified region 4871- 20097 - CANDIDATE hangs 10154 -6029 Test read # 82 ident 215694 12750- 20574 against verified region 4871- 20097 - CANDIDATE hangs 10190 507 Test read # 83 ident 173451 12806- 15674 against verified region 4871- 20097 - CANDIDATE hangs 10235 -4290 Test read # 84 ident 279067 12844- 21445 against verified region 4871- 20097 - CANDIDATE hangs 10300 1376 Test read # 85 ident 322396 12881- 20172 against verified region 4871- 20097 - CANDIDATE hangs 10317 122 Test read # 86 ident 322398 12888- 20169 against verified region 4871- 20097 - CANDIDATE hangs 10323 116 Test read # 87 ident 322395 12894- 20169 against verified region 4871- 20097 - CANDIDATE hangs 10335 115 Test read # 88 ident 665569 12899- 19841 against verified region 4871- 20097 - CANDIDATE hangs 10341 -212 Test read # 89 ident 322397 12904- 20165 against verified region 4871- 20097 - CANDIDATE hangs 10332 112 Test read # 90 ident 268880 13064- 15889 against verified region 4871- 20097 - CANDIDATE hangs 10505 -4084 Test read # 91 ident 171865 13089- 21459 against verified region 4871- 20097 - CANDIDATE hangs 10535 1405 Test read # 92 ident 171866 13140- 21671 against verified region 4871- 20097 - CANDIDATE hangs 10560 1604 Test read # 93 ident 37623 13228- 19600 against verified region 4871- 20097 - CANDIDATE hangs 10662 -445 Test read # 94 ident 52913 13249- 22268 against verified region 4871- 20097 - CANDIDATE hangs 10688 2199 Test read # 95 ident 250558 13283- 21690 against verified region 4871- 20097 - CANDIDATE hangs 10718 1620 Test read # 96 ident 250559 13289- 21656 against verified region 4871- 20097 - CANDIDATE hangs 10728 1585 Test read # 97 ident 530763 13371- 21661 against verified region 4871- 20097 - CANDIDATE hangs 10800 1591 Test read # 98 ident 673088 13413- 18587 against verified region 4871- 20097 - CANDIDATE hangs 10842 -1435 Test read # 99 ident 521003 13421- 18036 against verified region 4871- 20097 - CANDIDATE hangs 10850 -1967 Test read # 100 ident 654594 13560- 17477 against verified region 4871- 20097 - CANDIDATE hangs 10958 -2504 Test read # 101 ident 165024 13682- 20126 against verified region 4871- 20097 - CANDIDATE hangs 11106 72 Test read # 102 ident 205004 13686- 18668 against verified region 4871- 20097 - CANDIDATE hangs 11103 -1356 Test read # 103 ident 508530 13776- 20773 against verified region 4871- 20097 - CANDIDATE hangs 11207 708 Test read # 104 ident 58929 13812- 22397 against verified region 4871- 20097 - CANDIDATE hangs 11242 2327 Test read # 105 ident 58928 13832- 22401 against verified region 4871- 20097 - CANDIDATE hangs 11262 2333 Test read # 106 ident 138049 13957- 16745 against verified region 4871- 20097 - CANDIDATE hangs 11375 -3239 Test read # 107 ident 136031 14010- 19707 against verified region 4871- 20097 - CANDIDATE hangs 11454 -332 Test read # 108 ident 660476 14054- 22968 against verified region 4871- 20097 - CANDIDATE hangs 11479 2892 Test read # 109 ident 660477 14065- 18873 against verified region 4871- 20097 - CANDIDATE hangs 11480 -1150 Test read # 110 ident 508529 14093- 18192 against verified region 4871- 20097 - CANDIDATE hangs 11521 -1817 Test read # 111 ident 250556 14148- 15766 against verified region 4871- 20097 - CANDIDATE hangs 11575 -4204 Test read # 112 ident 278798 14268- 17181 against verified region 4871- 20097 - CANDIDATE hangs 11690 -2816 Test read # 113 ident 201439 14281- 16149 against verified region 4871- 20097 - CANDIDATE hangs 11701 -3825 Test read # 114 ident 452297 14329- 17712 against verified region 4871- 20097 - CANDIDATE hangs 11709 -2273 Test read # 115 ident 703635 14347- 16592 against verified region 4871- 20097 - CANDIDATE hangs 11775 -3404 Test read # 116 ident 550654 14411- 20872 against verified region 4871- 20097 - CANDIDATE hangs 11820 809 Test read # 117 ident 642252 14425- 27879 against verified region 4871- 20097 - CANDIDATE hangs 11846 7801 Test read # 118 ident 99733 14430- 17112 against verified region 4871- 20097 - CANDIDATE hangs 11872 -2894 Test read # 119 ident 224697 14552- 18561 against verified region 4871- 20097 - CANDIDATE hangs 11959 -1456 Test read # 120 ident 39805 14553- 16402 against verified region 4871- 20097 - CANDIDATE hangs 11969 -3582 Test read # 121 ident 717531 14582- 21946 against verified region 4871- 20097 - CANDIDATE hangs 11994 1872 Test read # 122 ident 484497 14596- 21728 against verified region 4871- 20097 - CANDIDATE hangs 12020 1671 Test read # 123 ident 710145 14656- 27035 against verified region 4871- 20097 - CANDIDATE hangs 12068 6955 Test read # 124 ident 550653 14698- 16911 against verified region 4871- 20097 - CANDIDATE hangs 12107 -3079 Test read # 125 ident 149368 14742- 15942 against verified region 4871- 20097 - CANDIDATE hangs 12148 -4026 Test read # 126 ident 710146 14764- 27029 against verified region 4871- 20097 - CANDIDATE hangs 12177 6949 Test read # 127 ident 582636 14874- 22784 against verified region 4871- 20097 - CANDIDATE hangs 12279 2711 Test read # 128 ident 341756 14874- 19204 against verified region 4871- 20097 - CANDIDATE hangs 12284 -835 Test read # 129 ident 582635 14881- 23357 against verified region 4871- 20097 - CANDIDATE hangs 12279 3285 Test read # 130 ident 444936 14897- 22155 against verified region 4871- 20097 - CANDIDATE hangs 12280 2082 Test read # 131 ident 173125 14965- 21255 against verified region 4871- 20097 - CANDIDATE hangs 12364 1184 Test read # 132 ident 238389 14996- 16155 against verified region 4871- 20097 - CANDIDATE hangs 12406 -3821 Test read # 133 ident 45895 15000- 25237 against verified region 4871- 20097 - CANDIDATE hangs 12423 5169 Test read # 134 ident 191705 15131- 20931 against verified region 4871- 20097 - CANDIDATE hangs 12528 870 Test read # 135 ident 42222 15142- 20178 against verified region 4871- 20097 - CANDIDATE hangs 12535 130 Test read # 136 ident 84103 15143- 23278 against verified region 4871- 20097 - CANDIDATE hangs 12542 3207 Test read # 137 ident 643146 15198- 22858 against verified region 4871- 20097 - CANDIDATE hangs 12609 2782 Test read # 138 ident 623715 15203- 23205 against verified region 4871- 20097 - CANDIDATE hangs 12606 3131 Test read # 139 ident 643144 15207- 22863 against verified region 4871- 20097 - CANDIDATE hangs 12609 2792 Test read # 140 ident 643143 15213- 22868 against verified region 4871- 20097 - CANDIDATE hangs 12611 2799 Test read # 141 ident 643145 15213- 22864 against verified region 4871- 20097 - CANDIDATE hangs 12614 2792 Test read # 142 ident 308565 15218- 25961 against verified region 4871- 20097 - CANDIDATE hangs 12619 5891 Test read # 143 ident 97710 15298- 21930 against verified region 4871- 20097 - CANDIDATE hangs 12694 1859 Test read # 144 ident 97709 15303- 21939 against verified region 4871- 20097 - CANDIDATE hangs 12700 1868 Test read # 145 ident 97708 15307- 21941 against verified region 4871- 20097 - CANDIDATE hangs 12703 1870 Test read # 146 ident 173124 15322- 21297 against verified region 4871- 20097 - CANDIDATE hangs 12702 1234 Test read # 147 ident 121963 15396- 21409 against verified region 4871- 20097 - CANDIDATE hangs 12834 1358 Test read # 148 ident 666786 15405- 25242 against verified region 4871- 20097 - CANDIDATE hangs 12803 5173 Test read # 149 ident 117912 15410- 24698 against verified region 4871- 20097 - CANDIDATE hangs 12806 4623 Test read # 150 ident 146279 15447- 23066 against verified region 4871- 20097 - CANDIDATE hangs 12835 2986 Test read # 151 ident 97861 15453- 18742 against verified region 4871- 20097 - CANDIDATE hangs 12864 -1292 Test read # 152 ident 125924 15483- 18683 against verified region 4871- 20097 - CANDIDATE hangs 12879 -1343 Test read # 153 ident 273305 15541- 25024 against verified region 4871- 20097 - CANDIDATE hangs 12936 4960 Test read # 154 ident 140601 15549- 18255 against verified region 4871- 20097 - CANDIDATE hangs 12964 -1766 Test read # 155 ident 544719 15618- 24055 against verified region 4871- 20097 - CANDIDATE hangs 13008 3978 Test read # 156 ident 82494 15638- 21925 against verified region 4871- 20097 - CANDIDATE hangs 13031 1860 Test read # 157 ident 250557 15712- 21702 against verified region 4871- 20097 - CANDIDATE hangs 13097 1638 Test read # 158 ident 472031 15743- 23666 against verified region 4871- 20097 - CANDIDATE hangs 13130 3592 Test read # 159 ident 643147 15801- 22862 against verified region 4871- 20097 - CANDIDATE hangs 13187 2792 Test read # 160 ident 654853 15854- 20977 against verified region 4871- 20097 - CANDIDATE hangs 13243 910 Test read # 161 ident 654852 15898- 23298 against verified region 4871- 20097 - CANDIDATE hangs 13282 3225 Test read # 162 ident 636849 15979- 21664 against verified region 4871- 20097 - CANDIDATE hangs 13368 1596 Test read # 163 ident 41549 15984- 18513 against verified region 4871- 20097 - CANDIDATE hangs 13370 -1508 Test read # 164 ident 203277 15995- 22747 against verified region 4871- 20097 - CANDIDATE hangs 13372 2680 Test read # 165 ident 203276 16052- 21411 against verified region 4871- 20097 - CANDIDATE hangs 13445 1334 Test read # 166 ident 676063 16072- 22391 against verified region 4871- 20097 - CANDIDATE hangs 13446 2311 Test read # 167 ident 163167 16188- 26807 against verified region 4871- 20097 - CANDIDATE hangs 13561 6734 Test read # 168 ident 411095 16225- 20961 against verified region 4871- 20097 - CANDIDATE hangs 13594 888 Test read # 169 ident 411094 16228- 19278 against verified region 4871- 20097 - CANDIDATE hangs 13613 -764 Test read # 170 ident 76763 16276- 19153 against verified region 4871- 20097 - CANDIDATE hangs 13642 -877 Test read # 171 ident 415691 16314- 21076 against verified region 4871- 20097 - CANDIDATE hangs 13688 1013 Test read # 172 ident 146778 16350- 20007 against verified region 4871- 20097 - CANDIDATE hangs 13729 -48 Test read # 173 ident 146462 16424- 18332 against verified region 4871- 20097 - CANDIDATE hangs 13793 -1682 Test read # 174 ident 645883 16489- 28838 against verified region 4871- 20097 - CANDIDATE hangs 13860 8761 Test read # 175 ident 282084 16504- 25412 against verified region 4871- 20097 - CANDIDATE hangs 13876 5340 Test read # 176 ident 282085 16554- 25393 against verified region 4871- 20097 - CANDIDATE hangs 13928 5320 Test read # 177 ident 150534 16565- 25354 against verified region 4871- 20097 - CANDIDATE hangs 13933 5282 Test read # 178 ident 342525 16616- 25753 against verified region 4871- 20097 - CANDIDATE hangs 13982 5677 Test read # 179 ident 194006 16667- 26587 against verified region 4871- 20097 - CANDIDATE hangs 14031 6515 Test read # 180 ident 461426 16689- 26174 against verified region 4871- 20097 - CANDIDATE hangs 14047 6103 Test read # 181 ident 150535 16970- 25392 against verified region 4871- 20097 - CANDIDATE hangs 14340 5340 Test read # 182 ident 663999 17058- 24225 against verified region 4871- 20097 - CANDIDATE hangs 14415 4150 Test read # 183 ident 374722 17063- 26124 against verified region 4871- 20097 - CANDIDATE hangs 14424 6055 Test read # 184 ident 425153 17103- 22622 against verified region 4871- 20097 - CANDIDATE hangs 14459 2551 Test read # 185 ident 430715 17154- 24064 against verified region 4871- 20097 - CANDIDATE hangs 14499 3975 Test read # 186 ident 322399 17194- 19797 against verified region 4871- 20097 - CANDIDATE hangs 14561 -258 Test read # 187 ident 389038 17210- 23568 against verified region 4871- 20097 - CANDIDATE hangs 14583 3509 Test read # 188 ident 309708 17229- 22219 against verified region 4871- 20097 - CANDIDATE hangs 14587 2154 Test read # 189 ident 159298 17240- 29635 against verified region 4871- 20097 - CANDIDATE hangs 14589 9558 Test read # 190 ident 667515 17345- 25502 against verified region 4871- 20097 - CANDIDATE hangs 14703 5438 Test read # 191 ident 667516 17356- 25507 against verified region 4871- 20097 - CANDIDATE hangs 14728 5463 Test read # 192 ident 667517 17390- 25486 against verified region 4871- 20097 - CANDIDATE hangs 14747 5417 Test read # 193 ident 51248 17396- 18798 against verified region 4871- 20097 - CANDIDATE hangs 14752 -1229 Test read # 194 ident 83280 17461- 27161 against verified region 4871- 20097 - CANDIDATE hangs 14823 7090 Test read # 195 ident 682705 17469- 28232 against verified region 4871- 20097 - CANDIDATE hangs 14826 8158 Test read # 196 ident 245683 17505- 23046 against verified region 4871- 20097 - CANDIDATE hangs 14845 2974 Test read # 197 ident 401085 17575- 24458 against verified region 4871- 20097 - CANDIDATE hangs 14929 4390 Test read # 198 ident 630359 17581- 19624 against verified region 4871- 20097 - CANDIDATE hangs 14944 -429 Test read # 199 ident 513181 17583- 24292 against verified region 4871- 20097 - CANDIDATE hangs 14933 4220 Test read # 200 ident 131718 17607- 27437 against verified region 4871- 20097 - CANDIDATE hangs 14956 7362 Test read # 201 ident 131719 17624- 26647 against verified region 4871- 20097 - CANDIDATE hangs 14974 6568 Test read # 202 ident 131717 17632- 27404 against verified region 4871- 20097 - CANDIDATE hangs 14989 7323 Test read # 203 ident 272885 17668- 21529 against verified region 4871- 20097 - CANDIDATE hangs 15021 1457 Test read # 204 ident 698702 17669- 27373 against verified region 4871- 20097 - CANDIDATE hangs 15019 7299 Test read # 205 ident 13732 17680- 23582 against verified region 4871- 20097 - CANDIDATE hangs 15026 3512 Test read # 206 ident 50900 17689- 25813 against verified region 4871- 20097 - CANDIDATE hangs 15040 5742 Test read # 207 ident 13733 17703- 22686 against verified region 4871- 20097 - CANDIDATE hangs 15046 2615 Test read # 208 ident 687492 17742- 22381 against verified region 4871- 20097 - CANDIDATE hangs 15084 2295 Test read # 209 ident 348416 17911- 31526 against verified region 4871- 20097 - CANDIDATE hangs 15256 11440 Test read # 210 ident 138109 18049- 25031 against verified region 4871- 20097 - CANDIDATE hangs 15393 4951 Test read # 211 ident 250560 18078- 20700 against verified region 4871- 20097 - CANDIDATE hangs 15439 642 Test read # 212 ident 313194 18190- 21806 against verified region 4871- 20097 - CANDIDATE hangs 15532 1725 Test read # 213 ident 359909 18204- 30685 against verified region 4871- 20097 - CANDIDATE hangs 15542 10590 Test read # 214 ident 633695 18257- 23773 against verified region 4871- 20097 - CANDIDATE hangs 15600 3702 Test read # 216 ident 175679 18526- 20185 against verified region 4871- 20097 - CANDIDATE hangs 15859 133 Test read # 217 ident 327462 18561- 24023 against verified region 4871- 20097 - CANDIDATE hangs 15885 3940 Test read # 218 ident 401258 18656- 20094 against verified region 4871- 20097 - CANDIDATE hangs 15974 50 Test read # 219 ident 489037 18672- 25526 against verified region 4871- 20097 - CANDIDATE hangs 15999 5452 Test read # 220 ident 489036 18673- 25530 against verified region 4871- 20097 - CANDIDATE hangs 15999 5459 Test read # 221 ident 376342 18676- 25282 against verified region 4871- 20097 - CANDIDATE hangs 15995 5201 Test read # 222 ident 489035 18688- 22158 against verified region 4871- 20097 - CANDIDATE hangs 16014 2093 Test read # 223 ident 489039 18692- 25522 against verified region 4871- 20097 - CANDIDATE hangs 16017 5449 Test read # 224 ident 489038 18713- 25526 against verified region 4871- 20097 - CANDIDATE hangs 16039 5455 Test read # 225 ident 633835 18720- 20984 against verified region 4871- 20097 - CANDIDATE hangs 16047 928 Test read # 226 ident 591921 18734- 29357 against verified region 4871- 20097 - CANDIDATE hangs 16058 9285 Test read # 227 ident 489040 18778- 22269 against verified region 4871- 20097 - CANDIDATE hangs 16100 2197 Test read # 228 ident 243548 18784- 20107 against verified region 4871- 20097 - CANDIDATE hangs 16103 57 Test read # 229 ident 484638 18795- 21652 against verified region 4871- 20097 - CANDIDATE hangs 16123 1595 Test read # 230 ident 156595 18835- 33390 against verified region 4871- 20097 - CANDIDATE hangs 16158 13308 Test read # 231 ident 116512 18899- 26433 against verified region 4871- 20097 - CANDIDATE hangs 16217 6352 Test read # 232 ident 201686 18904- 22059 against verified region 4871- 20097 - CANDIDATE hangs 16217 1981 Test read # 233 ident 116514 18918- 26440 against verified region 4871- 20097 - CANDIDATE hangs 16240 6363 Test read # 234 ident 36412 18949- 21415 against verified region 4871- 20097 - CANDIDATE hangs 16249 1318 Test read # 235 ident 538797 19176- 27750 against verified region 4871- 20097 - CANDIDATE hangs 16493 7675 Test read # 236 ident 215246 19201- 25266 against verified region 4871- 20097 - CANDIDATE hangs 16509 5187 Test read # 237 ident 365817 19221- 26593 against verified region 4871- 20097 - CANDIDATE hangs 16537 6520 Test read # 238 ident 215247 19247- 25149 against verified region 4871- 20097 - CANDIDATE hangs 16557 5072 Test read # 239 ident 241713 19343- 29520 against verified region 4871- 20097 - CANDIDATE hangs 16654 9438 Test read # 240 ident 144097 19358- 31226 against verified region 4871- 20097 - CANDIDATE hangs 16666 11137 Found appropriate intersecting read. createUnitigs()-- read 140145 place 2 edgeTo tig 113065 reads # 0 518374- 144097 verified 4871- 20097 position 3160- 20591 covered 0- 17350 BREAK at pos 11690 read 636847 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 90 len 11276 first read 642385 with 14 placements - last read 13082 with 21 placements createUnitigs()-- read 642385 place 0 edgeTo tig 90 reads # 1 13083- 393699 verified 5879- 1410 position 5879- 28 covered 0- 4421 SELF EXPECTED_3' Scan reads from #171 to #171 for high coordinate in verified region 16375-19174 Test read # 171 ident 521088 16375- 19174 against verified region 16375- 19174 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 1 edgeTo tig 2030 reads # 171 521088- 521088 verified 19174- 16375 position 21381- 15551 covered 2207- 4994 EXPECTED_3' NO_OVERLAPS Scan reads from #59 to #73 for low coordinate in verified region 13469-16488 Test read # 59 ident 608961 13469- 16260 against verified region 13469- 16488 Test read # 61 ident 553440 13473- 15381 against verified region 13469- 16488 - CANDIDATE hangs 2227 -1755 Test read # 63 ident 646221 13482- 15314 against verified region 13469- 16488 - CANDIDATE hangs 2219 -1825 Test read # 64 ident 384970 13490- 15905 against verified region 13469- 16488 - CANDIDATE hangs 2232 -1249 Test read # 66 ident 574909 13504- 14915 against verified region 13469- 16488 - CANDIDATE hangs 2241 -2210 Test read # 69 ident 492500 14099- 16488 against verified region 13469- 16488 - CANDIDATE hangs 2834 -660 Test read # 73 ident 718580 14753- 16189 against verified region 13469- 16488 - CANDIDATE hangs 3455 -970 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 2 edgeTo tig 2396 reads # 59 608961- 718580 verified 13469- 16488 position 11263- 17144 covered 2217- 5158 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #3 for high coordinate in verified region 173-1539 Test read # 3 ident 310440 173- 1539 against verified region 173- 1539 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 3 edgeTo tig 4054 reads # 3 310440- 310440 verified 1539- 173 position 3751- -2079 covered 2212- 3566 EXPECTED_3' NO_OVERLAPS Scan reads from #12 to #12 for high coordinate in verified region 1492-2812 Test read # 12 ident 578961 1492- 2812 against verified region 1492- 2812 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 4 edgeTo tig 5269 reads # 12 578961- 578961 verified 2812- 1492 position 6275- 444 covered 3463- 4770 EXPECTED_3' NO_OVERLAPS Scan reads from #13 to #19 for low coordinate in verified region 6112-9149 Test read # 13 ident 223720 6112- 9149 against verified region 6112- 9149 Test read # 18 ident 451093 6118- 8223 against verified region 6112- 9149 - CANDIDATE hangs 2207 -1512 Test read # 19 ident 715565 6120- 8087 against verified region 6112- 9149 - CANDIDATE hangs 2211 -1648 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 5 edgeTo tig 9650 reads # 13 223720- 715565 verified 6112- 9149 position 3908- 9739 covered 2207- 5218 EXPECTED_3' NO_OVERLAPS Scan reads from #7 to #7 for high coordinate in verified region 1868-5652 Test read # 7 ident 497603 1866- 5652 against verified region 1868- 5652 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 6 edgeTo tig 39024 reads # 7 497603- 497603 verified 5652- 1868 position 7862- 1868 covered 2210- 5818 NO_OVERLAPS NOT_SIMILAR Scan reads from #1 to #2 for low coordinate in verified region 421-3489 Test read # 1 ident 610728 421- 6184 against verified region 421- 3489 Test read # 2 ident 610729 835- 6193 against verified region 421- 3489 - CANDIDATE hangs 3238 2705 - SAVED Found appropriate intersecting read. createUnitigs()-- read 642385 place 7 edgeTo tig 113069 reads # 1 610728- 610729 verified 421- 3489 position -2403- 3489 covered 2825- 5818 BREAK at pos 835 read 610729 isLow 1 sim 0.8651 Scan reads from #26 to #165 for low coordinate in verified region 4274-7540 Test read # 26 ident 343559 4274- 7526 against verified region 4274- 7540 Test read # 45 ident 705232 4373- 5481 against verified region 4274- 7540 - CANDIDATE hangs 2202 -2548 Test read # 49 ident 611091 4381- 7540 against verified region 4274- 7540 - CANDIDATE hangs 2195 -573 Test read # 50 ident 382054 4381- 7498 against verified region 4274- 7540 - CANDIDATE hangs 2212 -608 Test read # 52 ident 210213 4382- 7448 against verified region 4274- 7540 - CANDIDATE hangs 2211 -656 Test read # 56 ident 67167 4386- 6427 against verified region 4274- 7540 - CANDIDATE hangs 2205 -1630 Test read # 63 ident 309620 4389- 5491 against verified region 4274- 7540 - CANDIDATE hangs 2207 -2536 Test read # 64 ident 225557 4390- 6882 against verified region 4274- 7540 - CANDIDATE hangs 2208 -1193 Test read # 67 ident 32672 4390- 5649 against verified region 4274- 7540 - CANDIDATE hangs 2206 -2380 Test read # 70 ident 185399 4392- 7335 against verified region 4274- 7540 - CANDIDATE hangs 2211 -763 Test read # 74 ident 597346 4393- 6774 against verified region 4274- 7540 - CANDIDATE hangs 2210 -1297 Test read # 76 ident 448834 4396- 6066 against verified region 4274- 7540 - CANDIDATE hangs 2212 -1973 Test read # 82 ident 556144 4400- 6342 against verified region 4274- 7540 - CANDIDATE hangs 2216 -1706 Test read # 86 ident 10708 4404- 6158 against verified region 4274- 7540 - CANDIDATE hangs 2219 -1880 Test read # 91 ident 210210 4406- 7447 against verified region 4274- 7540 - CANDIDATE hangs 2233 -657 Test read # 93 ident 203425 4408- 5662 against verified region 4274- 7540 - CANDIDATE hangs 2221 -2372 Test read # 100 ident 678548 4419- 6346 against verified region 4274- 7540 - CANDIDATE hangs 2247 -1713 Test read # 129 ident 667697 4765- 5930 against verified region 4274- 7540 - CANDIDATE hangs 2585 -2112 Test read # 133 ident 562085 5032- 6548 against verified region 4274- 7540 - CANDIDATE hangs 2839 -1511 Test read # 165 ident 610934 5677- 7072 against verified region 4274- 7540 - CANDIDATE hangs 3472 -1014 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 8 edgeTo tig 113181 reads # 26 343559- 610934 verified 4274- 7540 position 2181- 8066 covered 2102- 5245 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #3 for high coordinate in verified region 1656-3987 Test read # 3 ident 673679 1656- 3987 against verified region 1656- 3987 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 9 edgeTo tig 113438 reads # 3 673679- 673679 verified 3987- 1656 position 6197- 344 covered 2210- 4506 EXPECTED_3' NO_OVERLAPS Scan reads from #110 to #114 for high coordinate in verified region 2716-5821 Test read # 110 ident 611090 2716- 5821 against verified region 2716- 5821 Test read # 113 ident 452957 3541- 5806 against verified region 2716- 5821 - CANDIDATE hangs 2211 -1372 Test read # 114 ident 219948 3676- 5808 against verified region 2716- 5821 - CANDIDATE hangs 2209 -1505 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 10 edgeTo tig 113460 reads # 110 611090- 219948 verified 5821- 2716 position 8016- 2163 covered 2195- 5252 EXPECTED_3' NO_OVERLAPS Scan reads from #17 to #68 for low coordinate in verified region 299-3370 Test read # 17 ident 640661 299- 2672 against verified region 299- 3370 Test read # 24 ident 455645 302- 1864 against verified region 299- 3370 - CANDIDATE hangs 2211 -2105 Test read # 25 ident 217280 303- 3097 against verified region 299- 3370 - CANDIDATE hangs 2218 -918 Test read # 26 ident 470760 304- 3370 against verified region 299- 3370 - CANDIDATE hangs 2208 -670 Test read # 43 ident 562084 308- 2465 against verified region 299- 3370 - CANDIDATE hangs 2218 -1522 Test read # 44 ident 585104 309- 2024 against verified region 299- 3370 - CANDIDATE hangs 2216 -1947 Test read # 54 ident 607788 324- 1879 against verified region 299- 3370 - CANDIDATE hangs 2232 -2088 Test read # 56 ident 617732 333- 1844 against verified region 299- 3370 - CANDIDATE hangs 2243 -2126 Test read # 58 ident 152975 351- 2123 against verified region 299- 3370 - CANDIDATE hangs 2256 -1854 Test read # 59 ident 376828 371- 2237 against verified region 299- 3370 - CANDIDATE hangs 2279 -1739 Test read # 61 ident 5580 467- 3272 against verified region 299- 3370 - CANDIDATE hangs 2374 -752 Test read # 64 ident 254470 551- 3077 against verified region 299- 3370 - CANDIDATE hangs 2451 -930 Test read # 68 ident 343556 738- 2163 against verified region 299- 3370 - CANDIDATE hangs 2633 -1807 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 11 edgeTo tig 113532 reads # 17 640661- 343556 verified 299- 3370 position -1906- 3990 covered 2208- 5148 EXPECTED_3' NO_OVERLAPS Scan reads from #2 to #2 for high coordinate in verified region 120-3859 Test read # 2 ident 677765 118- 3859 against verified region 120- 3859 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 12 edgeTo tig 113582 reads # 2 677765- 677765 verified 3859- 120 position 6068- 120 covered 2209- 5818 NO_OVERLAPS Scan reads from #3 to #5 for high coordinate in verified region 1125-3871 Test read # 3 ident 213208 1125- 3871 against verified region 1125- 3871 Test read # 5 ident 472517 2024- 3070 against verified region 1125- 3871 - CANDIDATE hangs 2944 -1848 Failed to find appropriate intersecting read. createUnitigs()-- read 642385 place 13 edgeTo tig 113632 reads # 3 213208- 472517 verified 3871- 1125 position 6024- 173 covered 2164- 4863 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 13082 place 0 edgeTo tig 90 reads # 0 642385- 393699 verified 1457- 11271 position 1457- 11276 covered 0- 9778 SELF Scan reads from #0 to #1 for high coordinate in verified region 0-2240 Test read # 0 ident 701936 0- 10605 against verified region 0- 2240 Test read # 1 ident 701935 37- 11481 against verified region 0- 2240 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 1 edgeTo tig 712 reads # 0 701936- 701935 verified 2240- 0 position 2240- -7565 covered 0- 2199 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #0 for high coordinate in verified region 0-2354 Test read # 0 ident 537046 0- 8063 against verified region 0- 2354 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 2 edgeTo tig 1481 reads # 0 537046- 537046 verified 2354- 0 position 2354- -7585 covered 0- 2193 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #12 to #170 for low coordinate in verified region 16941-19215 Test read # 12 ident 429473 13397- 18643 against verified region 16941- 19215 Test read # 15 ident 134939 13437- 19173 against verified region 16941- 19215 Test read # 19 ident 999 13443- 19175 against verified region 16941- 19215 Test read # 29 ident 583328 13445- 19174 against verified region 16941- 19215 Test read # 39 ident 716771 13447- 19167 against verified region 16941- 19215 Test read # 42 ident 631478 13448- 19174 against verified region 16941- 19215 Test read # 48 ident 695861 13449- 19124 against verified region 16941- 19215 Test read # 49 ident 584477 13449- 18458 against verified region 16941- 19215 Test read # 55 ident 562041 13450- 19176 against verified region 16941- 19215 Test read # 56 ident 368746 13450- 19174 against verified region 16941- 19215 Test read # 57 ident 67691 13450- 19174 against verified region 16941- 19215 Test read # 60 ident 213292 13450- 19168 against verified region 16941- 19215 Test read # 61 ident 196093 13450- 19165 against verified region 16941- 19215 Test read # 63 ident 327595 13450- 18016 against verified region 16941- 19215 Test read # 64 ident 640659 13451- 19174 against verified region 16941- 19215 Test read # 69 ident 712195 13451- 19170 against verified region 16941- 19215 Test read # 74 ident 115517 13452- 19215 against verified region 16941- 19215 Test read # 79 ident 212037 13452- 19164 against verified region 16941- 19215 Test read # 80 ident 610640 13452- 19164 against verified region 16941- 19215 Test read # 86 ident 380923 13453- 19170 against verified region 16941- 19215 Test read # 92 ident 695860 13453- 19127 against verified region 16941- 19215 Test read # 94 ident 608181 13453- 18872 against verified region 16941- 19215 Test read # 95 ident 274619 13453- 18223 against verified region 16941- 19215 Test read # 100 ident 359379 13454- 19175 against verified region 16941- 19215 Test read # 102 ident 110951 13455- 19176 against verified region 16941- 19215 Test read # 103 ident 640660 13455- 19175 against verified region 16941- 19215 Test read # 104 ident 528123 13455- 19173 against verified region 16941- 19215 Test read # 105 ident 289175 13455- 19168 against verified region 16941- 19215 Test read # 107 ident 559108 13455- 18464 against verified region 16941- 19215 Test read # 108 ident 484934 13456- 19167 against verified region 16941- 19215 Test read # 109 ident 354300 13456- 19165 against verified region 16941- 19215 Test read # 111 ident 181098 13458- 19190 against verified region 16941- 19215 Test read # 116 ident 691089 13460- 19170 against verified region 16941- 19215 Test read # 117 ident 187893 13460- 19164 against verified region 16941- 19215 Test read # 118 ident 640733 13461- 19178 against verified region 16941- 19215 Test read # 121 ident 187633 13464- 19004 against verified region 16941- 19215 Test read # 123 ident 84228 13466- 19173 against verified region 16941- 19215 Test read # 124 ident 514998 13480- 19169 against verified region 16941- 19215 Test read # 125 ident 612517 13481- 18998 against verified region 16941- 19215 Test read # 126 ident 431143 13485- 19174 against verified region 16941- 19215 Test read # 127 ident 651979 13497- 19166 against verified region 16941- 19215 Test read # 129 ident 364854 13526- 19172 against verified region 16941- 19215 Test read # 130 ident 364659 13537- 19169 against verified region 16941- 19215 Test read # 131 ident 549830 13537- 19169 against verified region 16941- 19215 Test read # 134 ident 661676 13553- 19170 against verified region 16941- 19215 Test read # 144 ident 375652 13776- 19173 against verified region 16941- 19215 Test read # 147 ident 192842 13942- 19172 against verified region 16941- 19215 Test read # 148 ident 279144 14126- 19169 against verified region 16941- 19215 Test read # 149 ident 136151 14174- 19165 against verified region 16941- 19215 Test read # 151 ident 273254 14209- 19177 against verified region 16941- 19215 Test read # 153 ident 473719 14282- 19172 against verified region 16941- 19215 Test read # 158 ident 136934 14626- 19177 against verified region 16941- 19215 Test read # 160 ident 82024 14715- 19175 against verified region 16941- 19215 Test read # 161 ident 626576 14777- 19155 against verified region 16941- 19215 Test read # 162 ident 519807 14895- 19138 against verified region 16941- 19215 Test read # 163 ident 513504 14906- 19171 against verified region 16941- 19215 Test read # 164 ident 283346 14919- 19171 against verified region 16941- 19215 Test read # 165 ident 34117 14963- 19179 against verified region 16941- 19215 Test read # 166 ident 710495 14963- 19161 against verified region 16941- 19215 Test read # 167 ident 273253 15022- 19176 against verified region 16941- 19215 Test read # 169 ident 480617 15391- 19174 against verified region 16941- 19215 Test read # 170 ident 625574 15626- 19176 against verified region 16941- 19215 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 3 edgeTo tig 2030 reads # 12 429473- 625574 verified 16941- 19215 position 16941- 26758 covered 0- 2233 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #4 for low coordinate in verified region 173-1539 Test read # 3 ident 310440 173- 1539 against verified region 173- 1539 Test read # 4 ident 222997 344- 1539 against verified region 173- 1539 - CANDIDATE hangs 1002 -7589 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 4 edgeTo tig 4054 reads # 3 310440- 222997 verified 173- 1539 position -658- 9128 covered 832- 2189 EXPECTED_3' NO_OVERLAPS Scan reads from #2 to #6 for low coordinate in verified region 1857-4107 Test read # 2 ident 61084 223- 4107 against verified region 1857- 4107 Test read # 3 ident 694046 229- 4094 against verified region 1857- 4107 Test read # 4 ident 138055 234- 4099 against verified region 1857- 4107 Test read # 6 ident 466796 238- 4090 against verified region 1857- 4107 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 5 edgeTo tig 5269 reads # 2 61084- 466796 verified 1857- 4107 position 1857- 11683 covered 0- 2195 EXPECTED_3' NO_OVERLAPS Scan reads from #12 to #22 for high coordinate in verified region 6111-8307 Test read # 12 ident 339721 6111- 10032 against verified region 6111- 8307 Test read # 15 ident 535889 6116- 10071 against verified region 6111- 8307 Test read # 17 ident 567746 6118- 9913 against verified region 6111- 8307 Test read # 18 ident 451093 6118- 8223 against verified region 6111- 8307 - CANDIDATE hangs 76 -7585 Test read # 19 ident 715565 6120- 8087 against verified region 6111- 8307 - CANDIDATE hangs 218 -7589 Test read # 21 ident 13233 6135- 9705 against verified region 6111- 8307 Test read # 22 ident 620779 6243- 9596 against verified region 6111- 8307 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 6 edgeTo tig 9650 reads # 12 339721- 620779 verified 8307- 6111 position 8307- -1467 covered 0- 2197 EXPECTED_3' NO_OVERLAPS Scan reads from #14 to #25 for high coordinate in verified region 9445-11743 Test read # 14 ident 403079 9445- 15224 against verified region 9445- 11743 Test read # 15 ident 535932 9521- 13474 against verified region 9445- 11743 Test read # 16 ident 447104 9528- 15219 against verified region 9445- 11743 Test read # 17 ident 120573 9531- 16915 against verified region 9445- 11743 Test read # 18 ident 364660 9531- 15214 against verified region 9445- 11743 Test read # 19 ident 90622 9534- 15211 against verified region 9445- 11743 Test read # 22 ident 566802 9916- 15213 against verified region 9445- 11743 Test read # 25 ident 559109 10216- 13586 against verified region 9445- 11743 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 7 edgeTo tig 10779 reads # 14 403079- 559109 verified 11743- 9445 position 11743- 1937 covered 0- 2257 EXPECTED_3' NO_OVERLAPS Scan reads from #5 to #5 for high coordinate in verified region 5351-7512 Test read # 5 ident 525758 5351- 9445 against verified region 5351- 7512 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 8 edgeTo tig 13294 reads # 5 525758- 525758 verified 7512- 5351 position 7512- -2238 covered 0- 2189 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #6 to #7 for low coordinate in verified region 3487-5653 Test read # 6 ident 207352 1865- 5653 against verified region 3487- 5653 Test read # 7 ident 497603 1866- 5652 against verified region 3487- 5653 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 9 edgeTo tig 39024 reads # 6 207352- 497603 verified 3487- 5653 position 3487- 13239 covered 0- 2193 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #0 for low coordinate in verified region 6746-9046 Test read # 0 ident 112243 0- 9046 against verified region 6746- 9046 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 10 edgeTo tig 113151 reads # 0 112243- 112243 verified 6746- 9046 position 6746- 16625 covered 0- 2199 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #1 to #1 for low coordinate in verified region 4022-6015 Test read # 1 ident 672449 184- 6015 against verified region 4022- 6015 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 11 edgeTo tig 113152 reads # 1 672449- 672449 verified 4022- 6015 position 4022- 13889 covered 0- 1904 EXPECTED_3' NO_OVERLAPS Scan reads from #54 to #84 for high coordinate in verified region 4386-6765 Test read # 54 ident 445295 4386- 10662 against verified region 4386- 6765 Test read # 57 ident 548635 4387- 11115 against verified region 4386- 6765 Test read # 58 ident 441385 4387- 10567 against verified region 4386- 6765 Test read # 72 ident 555899 4393- 10819 against verified region 4386- 6765 Test read # 77 ident 380924 4398- 10606 against verified region 4386- 6765 Test read # 80 ident 585984 4400- 10949 against verified region 4386- 6765 Test read # 81 ident 585988 4400- 10888 against verified region 4386- 6765 Test read # 84 ident 193284 4403- 10622 against verified region 4386- 6765 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 12 edgeTo tig 113181 reads # 54 445295- 193284 verified 6765- 4386 position 6765- -3192 covered 0- 2198 EXPECTED_3' NO_OVERLAPS Scan reads from #1 to #114 for low coordinate in verified region 3545-5831 Test read # 1 ident 663816 14- 5822 against verified region 3545- 5831 Test read # 3 ident 668099 25- 5814 against verified region 3545- 5831 Test read # 4 ident 282019 27- 5820 against verified region 3545- 5831 Test read # 19 ident 121554 61- 5796 against verified region 3545- 5831 Test read # 36 ident 197477 251- 5810 against verified region 3545- 5831 Test read # 37 ident 699047 277- 5804 against verified region 3545- 5831 Test read # 41 ident 55434 359- 5831 against verified region 3545- 5831 Test read # 48 ident 165697 425- 5797 against verified region 3545- 5831 Test read # 49 ident 98890 433- 5791 against verified region 3545- 5831 Test read # 50 ident 98892 437- 5804 against verified region 3545- 5831 Test read # 52 ident 252115 507- 5816 against verified region 3545- 5831 Test read # 59 ident 491559 720- 5807 against verified region 3545- 5831 Test read # 62 ident 136150 764- 5814 against verified region 3545- 5831 Test read # 74 ident 676741 1061- 5808 against verified region 3545- 5831 Test read # 79 ident 124739 1269- 5818 against verified region 3545- 5831 Test read # 80 ident 136066 1278- 5813 against verified region 3545- 5831 Test read # 81 ident 82025 1299- 5815 against verified region 3545- 5831 Test read # 114 ident 219948 3676- 5808 against verified region 3545- 5831 - CANDIDATE hangs 68 -7587 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 13 edgeTo tig 113460 reads # 1 663816- 219948 verified 3545- 5831 position 3545- 13399 covered 0- 2193 EXPECTED_3' NO_OVERLAPS Scan reads from #4 to #69 for high coordinate in verified region 262-2600 Test read # 4 ident 269793 262- 6092 against verified region 262- 2600 Test read # 6 ident 95233 285- 4904 against verified region 262- 2600 Test read # 8 ident 626609 291- 6106 against verified region 262- 2600 Test read # 9 ident 399130 292- 5203 against verified region 262- 2600 Test read # 10 ident 216347 293- 4593 against verified region 262- 2600 Test read # 12 ident 427911 294- 5024 against verified region 262- 2600 Test read # 13 ident 451646 295- 4844 against verified region 262- 2600 Test read # 14 ident 436362 296- 4234 against verified region 262- 2600 Test read # 15 ident 694296 297- 6151 against verified region 262- 2600 Test read # 18 ident 431141 300- 6123 against verified region 262- 2600 Test read # 20 ident 300771 301- 5213 against verified region 262- 2600 Test read # 21 ident 406459 301- 4350 against verified region 262- 2600 Test read # 22 ident 83747 302- 4864 against verified region 262- 2600 Test read # 23 ident 355880 302- 4654 against verified region 262- 2600 Test read # 26 ident 470760 304- 3370 against verified region 262- 2600 Test read # 27 ident 503559 305- 5411 against verified region 262- 2600 Test read # 30 ident 685821 306- 5354 against verified region 262- 2600 Test read # 32 ident 641450 306- 5197 against verified region 262- 2600 Test read # 41 ident 232276 308- 4931 against verified region 262- 2600 Test read # 42 ident 644661 308- 3759 against verified region 262- 2600 Test read # 46 ident 17566 310- 5496 against verified region 262- 2600 Test read # 47 ident 279145 310- 5426 against verified region 262- 2600 Test read # 48 ident 697014 311- 5068 against verified region 262- 2600 Test read # 51 ident 691090 319- 6070 against verified region 262- 2600 Test read # 67 ident 352610 715- 6102 against verified region 262- 2600 Test read # 69 ident 176751 772- 5417 against verified region 262- 2600 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 14 edgeTo tig 113532 reads # 4 269793- 176751 verified 2600- 262 position 2600- -7283 covered 0- 2242 EXPECTED_3' NO_OVERLAPS Scan reads from #15 to #15 for low coordinate in verified region 13600-15814 Test read # 15 ident 338205 8846- 15814 against verified region 13600- 15814 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 15 edgeTo tig 113535 reads # 15 338205- 338205 verified 13600- 15814 position 13600- 23417 covered 0- 2175 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #11 to #11 for low coordinate in verified region 8948-11157 Test read # 11 ident 230756 3474- 11157 against verified region 8948- 11157 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 16 edgeTo tig 113581 reads # 11 230756- 230756 verified 8948- 11157 position 8948- 18735 covered 0- 2200 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #3 for low coordinate in verified region 1677-3873 Test read # 0 ident 172374 0- 3873 against verified region 1677- 3873 Test read # 2 ident 677765 118- 3859 against verified region 1677- 3873 Test read # 3 ident 593732 722- 3856 against verified region 1677- 3873 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 17 edgeTo tig 113582 reads # 0 172374- 593732 verified 1677- 3873 position 1677- 11447 covered 0- 2202 EXPECTED_3' NO_OVERLAPS Scan reads from #16 to #19 for low coordinate in verified region 11387-13730 Test read # 16 ident 311374 6238- 13730 against verified region 11387- 13730 Test read # 18 ident 311372 6247- 13724 against verified region 11387- 13730 Test read # 19 ident 311371 6248- 13721 against verified region 11387- 13730 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 18 edgeTo tig 113630 reads # 16 311374- 311371 verified 11387- 13730 position 11387- 21216 covered 0- 2289 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #5 to #6 for low coordinate in verified region 3537-5713 Test read # 5 ident 79202 1813- 5713 against verified region 3537- 5713 Test read # 6 ident 109201 2959- 5685 against verified region 3537- 5713 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 19 edgeTo tig 113770 reads # 5 79202- 109201 verified 3537- 5713 position 3537- 13299 covered 0- 2190 EXPECTED_3' NO_OVERLAPS Scan reads from #28 to #28 for low coordinate in verified region 27296-29590 Test read # 28 ident 61530 18799- 29590 against verified region 27296- 29590 Failed to find appropriate intersecting read. createUnitigs()-- read 13082 place 20 edgeTo tig 582069 reads # 28 61530- 61530 verified 27296- 29590 position 27296- 37149 covered 0- 2219 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 93 len 51786 first read 32715 with 1 placements - last read 398688 with 1 placements createUnitigs()-- read 32715 place 0 edgeTo tig 93 reads # 1 32710- 32709 verified 5- 4967 position 0- 4967 covered 5- 4949 SELF EXPECTED_5' createUnitigs()-- read 398688 place 0 edgeTo tig 93 reads # 48 26827- 172771 verified 50006- 44981 position 51783- 44981 covered 1767- 6761 SELF EXPECTED_5' createUnitigs()-- tig 94 len 53567 first read 33605 with 2 placements - last read 6567 with 2 placements createUnitigs()-- read 33605 place 0 edgeTo tig 94 reads # 1 652007- 204117 verified 18- 6980 position 18- 6980 covered 0- 6940 SELF Scan reads from #4 to #5 for high coordinate in verified region 1727-3228 Test read # 4 ident 376899 1727- 4852 against verified region 1727- 3228 Test read # 5 ident 473033 2104- 8153 against verified region 1727- 3228 Failed to find appropriate intersecting read. createUnitigs()-- read 33605 place 1 edgeTo tig 246 reads # 4 376899- 473033 verified 1727- 3228 position -3713- 3228 covered 5434- 6940 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 6567 place 0 edgeTo tig 94 reads # 70 229343- 47709 verified 46298- 53536 position 46298- 53556 covered 0- 7241 SELF EXPECTED_3' Scan reads from #6 to #10 for high coordinate in verified region 4962-6537 Test read # 6 ident 460444 4962- 6284 against verified region 4962- 6537 - CANDIDATE hangs 4574 -1329 Test read # 7 ident 346032 4967- 6501 against verified region 4962- 6537 - CANDIDATE hangs 4354 -1332 Test read # 9 ident 630806 4991- 6528 against verified region 4962- 6537 - CANDIDATE hangs 4326 -1355 Test read # 10 ident 97325 4992- 6537 against verified region 4962- 6537 Failed to find appropriate intersecting read. createUnitigs()-- read 6567 place 1 edgeTo tig 11365 reads # 6 460444- 97325 verified 6537- 4962 position 10856- 3635 covered 4321- 5924 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 98 len 49244 first read 71469 with 5 placements - last read 591333 with 1 placements createUnitigs()-- read 71469 place 0 edgeTo tig 98 reads # 1 71470- 7575 verified 682- 8698 position 24- 8698 covered 662- 8628 SELF EXPECTED_5' Scan reads from #20 to #21 for low coordinate in verified region 8738-9647 Test read # 20 ident 329957 7977- 9618 against verified region 8738- 9647 Test read # 21 ident 239587 8096- 9647 against verified region 8738- 9647 Failed to find appropriate intersecting read. createUnitigs()-- read 71469 place 1 edgeTo tig 8594 reads # 20 329957- 239587 verified 9647- 8738 position 17386- 8738 covered 7741- 8628 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #5 for high coordinate in verified region 1778-2735 Test read # 2 ident 108393 1778- 4401 against verified region 1778- 2735 Test read # 4 ident 573831 1789- 4448 against verified region 1778- 2735 Test read # 5 ident 277442 1827- 4416 against verified region 1778- 2735 Failed to find appropriate intersecting read. createUnitigs()-- read 71469 place 2 edgeTo tig 14966 reads # 2 108393- 277442 verified 1778- 2735 position -5936- 2735 covered 7716- 8628 EXPECTED_5' NO_OVERLAPS Scan reads from #8 to #10 for high coordinate in verified region 2337-3249 Test read # 8 ident 710775 2337- 4710 against verified region 2337- 3249 Test read # 9 ident 144203 2353- 4595 against verified region 2337- 3249 Test read # 10 ident 25954 2367- 4939 against verified region 2337- 3249 Failed to find appropriate intersecting read. createUnitigs()-- read 71469 place 3 edgeTo tig 582709 reads # 8 710775- 25954 verified 2337- 3249 position -5400- 3249 covered 7740- 8628 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for low coordinate in verified region 1702-2606 Test read # 0 ident 82486 0- 2606 against verified region 1702- 2606 Failed to find appropriate intersecting read. createUnitigs()-- read 71469 place 4 edgeTo tig 584235 reads # 0 82486- 82486 verified 2606- 1702 position 10343- 1702 covered 7737- 8628 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 591333 place 0 edgeTo tig 98 reads # 264 43014- 43012 verified 46320- 49238 position 46320- 49241 covered 0- 2922 SELF createUnitigs()-- tig 99 len 25543 first read 53723 with 2 placements - last read 43498 with 1 placements Scan reads from #43 to #233 for high coordinate in verified region 23959-31146 Test read # 43 ident 191227 14104- 25182 against verified region 23959- 31146 - CANDIDATE hangs -9746 -7427 - SAVED Test read # 49 ident 215041 14499- 24694 against verified region 23959- 31146 - CANDIDATE hangs -9123 -7708 Test read # 69 ident 514335 15704- 26324 against verified region 23959- 31146 - CANDIDATE hangs -8180 -6312 - SAVED Test read # 101 ident 279385 17176- 26313 against verified region 23959- 31146 - CANDIDATE hangs -6718 -6290 Test read # 113 ident 562050 17762- 28379 against verified region 23959- 31146 - CANDIDATE hangs -6148 -4198 - SAVED Test read # 114 ident 597627 17776- 28510 against verified region 23959- 31146 - CANDIDATE hangs -6134 -4096 - SAVED Test read # 115 ident 387780 17972- 24672 against verified region 23959- 31146 - CANDIDATE hangs -5985 -7954 Test read # 121 ident 191661 18297- 26115 against verified region 23959- 31146 - CANDIDATE hangs -5612 -6491 Test read # 122 ident 553722 18367- 26758 against verified region 23959- 31146 - CANDIDATE hangs -5561 -5863 Test read # 124 ident 400646 18378- 25628 against verified region 23959- 31146 - CANDIDATE hangs -5525 -6983 Test read # 126 ident 553724 18393- 26754 against verified region 23959- 31146 - CANDIDATE hangs -5525 -5866 Test read # 127 ident 553723 18397- 26388 against verified region 23959- 31146 - CANDIDATE hangs -5504 -6214 Test read # 131 ident 305966 18534- 25557 against verified region 23959- 31146 - CANDIDATE hangs -5375 -7056 Test read # 135 ident 244972 18720- 24534 against verified region 23959- 31146 - CANDIDATE hangs -4897 -7780 Test read # 139 ident 342428 19051- 28388 against verified region 23959- 31146 - CANDIDATE hangs -4863 -4177 Test read # 140 ident 467192 19059- 27938 against verified region 23959- 31146 - CANDIDATE hangs -4844 -4623 Test read # 141 ident 141697 19071- 28073 against verified region 23959- 31146 - CANDIDATE hangs -4846 -4561 Test read # 142 ident 467193 19080- 27916 against verified region 23959- 31146 - CANDIDATE hangs -4801 -4628 Test read # 143 ident 467194 19081- 27927 against verified region 23959- 31146 - CANDIDATE hangs -4794 -4612 Test read # 144 ident 467191 19096- 27930 against verified region 23959- 31146 - CANDIDATE hangs -4793 -4610 Test read # 146 ident 434859 19297- 24530 against verified region 23959- 31146 - CANDIDATE hangs -4372 -7817 Test read # 155 ident 711808 19906- 27889 against verified region 23959- 31146 - CANDIDATE hangs -4031 -4706 Test read # 157 ident 705242 20042- 26270 against verified region 23959- 31146 - CANDIDATE hangs -3885 -6319 Test read # 158 ident 237536 20081- 26752 against verified region 23959- 31146 - CANDIDATE hangs -3866 -5866 Test read # 161 ident 241124 20202- 28064 against verified region 23959- 31146 - CANDIDATE hangs -3745 -4578 Test read # 162 ident 316344 20522- 25963 against verified region 23959- 31146 - CANDIDATE hangs -3419 -6640 Test read # 163 ident 316343 20543- 25968 against verified region 23959- 31146 - CANDIDATE hangs -3406 -6639 Test read # 168 ident 463667 20655- 25637 against verified region 23959- 31146 - CANDIDATE hangs -3263 -6942 Test read # 170 ident 463668 20662- 25638 against verified region 23959- 31146 - CANDIDATE hangs -3252 -6942 Test read # 172 ident 533294 20722- 24662 against verified region 23959- 31146 - CANDIDATE hangs -3238 -7926 Test read # 174 ident 538935 20893- 28259 against verified region 23959- 31146 - CANDIDATE hangs -3065 -4343 Test read # 176 ident 718077 21040- 26107 against verified region 23959- 31146 - CANDIDATE hangs -2918 -6499 Test read # 177 ident 381050 21497- 26934 against verified region 23959- 31146 - CANDIDATE hangs -2458 -5635 Test read # 184 ident 93269 21863- 31007 against verified region 23959- 31146 - CANDIDATE hangs -2121 -1628 - SAVED Test read # 185 ident 538936 21883- 28280 against verified region 23959- 31146 - CANDIDATE hangs -2114 -4336 Test read # 187 ident 233398 21903- 26450 against verified region 23959- 31146 - CANDIDATE hangs -2074 -6156 Test read # 188 ident 658096 21964- 26185 against verified region 23959- 31146 - CANDIDATE hangs -2058 -6400 Test read # 189 ident 535890 21974- 26112 against verified region 23959- 31146 - CANDIDATE hangs -2028 -6497 Test read # 194 ident 627465 22137- 27618 against verified region 23959- 31146 - CANDIDATE hangs -1869 -4966 Test read # 196 ident 578382 22235- 26168 against verified region 23959- 31146 - CANDIDATE hangs -1756 -6425 Test read # 197 ident 53684 22365- 25080 against verified region 23959- 31146 - CANDIDATE hangs -1661 -7531 Test read # 199 ident 423229 22397- 28495 against verified region 23959- 31146 - CANDIDATE hangs -1619 -4033 Test read # 200 ident 423227 22398- 28476 against verified region 23959- 31146 - CANDIDATE hangs -1597 -4048 Test read # 201 ident 400647 22407- 25635 against verified region 23959- 31146 - CANDIDATE hangs -1579 -6974 Test read # 203 ident 360152 22423- 26431 against verified region 23959- 31146 - CANDIDATE hangs -1603 -6205 Test read # 204 ident 479117 22436- 30657 against verified region 23959- 31146 - CANDIDATE hangs -1562 -2021 Test read # 205 ident 423228 22459- 27964 against verified region 23959- 31146 - CANDIDATE hangs -1541 -4578 Test read # 206 ident 397485 22526- 26012 against verified region 23959- 31146 - CANDIDATE hangs -1509 -6614 Test read # 208 ident 413170 22611- 25627 against verified region 23959- 31146 - CANDIDATE hangs -1448 -7010 Test read # 209 ident 115311 22747- 25054 against verified region 23959- 31146 - CANDIDATE hangs -1274 -7544 Test read # 210 ident 623173 22812- 26494 against verified region 23959- 31146 - CANDIDATE hangs -1215 -6134 Test read # 211 ident 334233 22841- 28430 against verified region 23959- 31146 - CANDIDATE hangs -1146 -4143 Test read # 212 ident 386854 22857- 29428 against verified region 23959- 31146 - CANDIDATE hangs -1149 -3130 Test read # 213 ident 259490 22881- 26146 against verified region 23959- 31146 - CANDIDATE hangs -1117 -6431 Test read # 214 ident 259489 22895- 28042 against verified region 23959- 31146 - CANDIDATE hangs -1128 -4522 Test read # 215 ident 528190 22933- 25862 against verified region 23959- 31146 - CANDIDATE hangs -1074 -6758 Test read # 217 ident 537273 23045- 25547 against verified region 23959- 31146 - CANDIDATE hangs -960 -7041 Test read # 219 ident 342259 23055- 26107 against verified region 23959- 31146 - CANDIDATE hangs -954 -6484 Test read # 221 ident 426056 23225- 28527 against verified region 23959- 31146 - CANDIDATE hangs -797 -4038 Test read # 222 ident 616180 23236- 29766 against verified region 23959- 31146 - CANDIDATE hangs -774 -2900 Test read # 223 ident 982 23386- 27056 against verified region 23959- 31146 - CANDIDATE hangs -651 -5559 Test read # 225 ident 609401 23585- 30446 against verified region 23959- 31146 - CANDIDATE hangs -414 -2183 Test read # 226 ident 479939 23685- 31146 against verified region 23959- 31146 Test read # 227 ident 479397 23792- 25205 against verified region 23959- 31146 - CANDIDATE hangs -239 -7380 Test read # 228 ident 601908 23935- 27297 against verified region 23959- 31146 - CANDIDATE hangs -91 -5288 Test read # 229 ident 289925 23938- 26873 against verified region 23959- 31146 - CANDIDATE hangs -97 -5709 Test read # 230 ident 597628 25725- 28109 against verified region 23959- 31146 - CANDIDATE hangs 1630 -4483 Test read # 231 ident 145840 26021- 27425 against verified region 23959- 31146 - CANDIDATE hangs 1940 -5191 Test read # 232 ident 384084 26815- 29806 against verified region 23959- 31146 - CANDIDATE hangs 2749 -2831 Test read # 233 ident 274875 26848- 29378 against verified region 23959- 31146 - CANDIDATE hangs 2813 -3215 Found appropriate intersecting read. createUnitigs()-- read 53723 place 0 edgeTo tig 98 reads # 43 191227- 274875 verified 23959- 31146 position 23959- 32589 covered 0- 6956 BREAK at pos 31007 read 93269 isLow 0 sim 1.0000 createUnitigs()-- read 53723 place 1 edgeTo tig 99 reads # 1 255417- 180363 verified 174- 8628 position 33- 8628 covered 135- 8520 SELF EXPECTED_5' createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 43498 place 0 edgeTo tig 99 reads # 80 451982- 565249 verified 22358- 25403 position 22358- 25540 covered 0- 3035 SELF EXPECTED_3' createUnitigs()-- tig 100 len 27916 first read 53431 with 1 placements - last read 365834 with 1 placements createUnitigs()-- read 53431 place 0 edgeTo tig 100 reads # 1 53433- 301609 verified 6- 6011 position 1- 6011 covered 0- 6003 SELF createUnitigs()-- read 365834 place 0 edgeTo tig 100 reads # 40 7888- 285650 verified 22121- 27910 position 22121- 27910 covered 0- 5788 SELF createUnitigs()-- tig 102 len 40668 first read 86773 with 1 placements - last read 477997 with 2 placements createUnitigs()-- read 86773 place 0 edgeTo tig 102 reads # 1 86772- 442701 verified 6- 6692 position 6- 6692 covered 0- 6684 SELF createUnitigs()-- read 477997 place 0 edgeTo tig 102 reads # 22 109951- 402923 verified 30879- 39794 position 30879- 40649 covered 0- 8878 SELF EXPECTED_3' Scan reads from #46 to #51 for low coordinate in verified region 32380-33688 Test read # 46 ident 686387 32380- 40796 against verified region 32380- 33688 Test read # 47 ident 429817 32602- 34705 against verified region 32380- 33688 - CANDIDATE hangs 8701 1044 - SAVED Test read # 48 ident 10232 32720- 36909 against verified region 32380- 33688 - CANDIDATE hangs 8831 3234 Test read # 50 ident 429819 32812- 34135 against verified region 32380- 33688 - CANDIDATE hangs 8925 488 Test read # 51 ident 139285 32839- 41091 against verified region 32380- 33688 - CANDIDATE hangs 8924 7365 Found appropriate intersecting read. createUnitigs()-- read 477997 place 1 edgeTo tig 582071 reads # 46 686387- 139285 verified 32380- 33688 position 23901- 33688 covered 8465- 9746 BREAK at pos 32602 read 429817 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 103 len 45338 first read 116396 with 2 placements - last read 492873 with 1 placements createUnitigs()-- read 116396 place 0 edgeTo tig 103 reads # 1 116400- 431561 verified 4- 6471 position 4- 6471 covered 0- 6458 SELF Scan reads from #36 to #36 for high coordinate in verified region 13380-14533 Test read # 36 ident 213326 13380- 14533 against verified region 13380- 14533 Failed to find appropriate intersecting read. createUnitigs()-- read 116396 place 1 edgeTo tig 14530 reads # 36 213326- 213326 verified 13380- 14533 position 12851- 19316 covered 529- 1675 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 492873 place 0 edgeTo tig 103 reads # 62 62551- 474416 verified 45288- 37796 position 45335- 37796 covered 40- 7523 SELF EXPECTED_5' createUnitigs()-- tig 104 len 41465 first read 283768 with 1 placements - last read 122279 with 1 placements createUnitigs()-- read 283768 place 0 edgeTo tig 104 reads # 1 71925- 464949 verified 8711- 874 position 8711- 5 covered 0- 7825 SELF EXPECTED_3' createUnitigs()-- read 122279 place 0 edgeTo tig 104 reads # 40 363115- 580995 verified 38831- 41312 position 38831- 41467 covered 0- 2452 SELF EXPECTED_3' createUnitigs()-- tig 105 len 34527 first read 123352 with 1 placements - last read 228787 with 1 placements createUnitigs()-- read 123352 place 0 edgeTo tig 105 reads # 1 199554- 199554 verified 276- 1315 position 1- 1315 covered 275- 1269 SELF EXPECTED_5' createUnitigs()-- read 228787 place 0 edgeTo tig 105 reads # 88 469531- 240757 verified 34517- 28542 position 34518- 28542 covered 40- 5884 SELF EXPECTED_5' createUnitigs()-- tig 108 len 53001 first read 13803 with 2 placements - last read 168416 with 1 placements createUnitigs()-- read 13803 place 0 edgeTo tig 108 reads # 1 13800- 63530 verified 5417- 935 position 5417- 1 covered 0- 4428 SELF EXPECTED_3' Scan reads from #4 to #9 for low coordinate in verified region 2340-3589 Test read # 4 ident 609169 2340- 8039 against verified region 2340- 3589 Test read # 6 ident 609173 2348- 7047 against verified region 2340- 3589 - CANDIDATE hangs 4179 3455 - SAVED Test read # 7 ident 609172 2386- 8046 against verified region 2340- 3589 - CANDIDATE hangs 4208 4455 Test read # 9 ident 410984 2992- 4217 against verified region 2340- 3589 - CANDIDATE hangs 4794 639 Found appropriate intersecting read. createUnitigs()-- read 13803 place 1 edgeTo tig 42557 reads # 4 609169- 410984 verified 2340- 3589 position -1821- 3589 covered 4172- 5365 BREAK at pos 2348 read 609173 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 168416 place 0 edgeTo tig 108 reads # 61 147197- 147196 verified 46417- 51149 position 46417- 52998 covered 0- 4677 SELF EXPECTED_3' createUnitigs()-- tig 110 len 49752 first read 55496 with 1 placements - last read 183497 with 1 placements createUnitigs()-- read 55496 place 0 edgeTo tig 110 reads # 1 55498- 473433 verified 6697- 4 position 6697- 4 covered 0- 6665 SELF createUnitigs()-- read 183497 place 0 edgeTo tig 110 reads # 51 563043- 360959 verified 49746- 41814 position 49748- 41814 covered 0- 7935 SELF createUnitigs()-- tig 115 len 11522 first read 372719 with 3 placements - last read 469093 with 4 placements Scan reads from #84 to #145 for low coordinate in verified region 31406-41785 Test read # 84 ident 249815 25439- 32153 against verified region 31406- 41785 Test read # 112 ident 171441 27085- 32051 against verified region 31406- 41785 Test read # 120 ident 193158 28097- 32468 against verified region 31406- 41785 Test read # 121 ident 268684 28227- 32586 against verified region 31406- 41785 Test read # 135 ident 312663 39076- 46045 against verified region 31406- 41785 - CANDIDATE hangs -4260 -7834 - SAVED Test read # 136 ident 526404 39508- 43426 against verified region 31406- 41785 - CANDIDATE hangs -1708 -8276 Test read # 137 ident 165776 39649- 44375 against verified region 31406- 41785 - CANDIDATE hangs -2624 -8415 Test read # 138 ident 669233 39658- 46560 against verified region 31406- 41785 - CANDIDATE hangs -4794 -8419 Test read # 139 ident 80899 39718- 44641 against verified region 31406- 41785 - CANDIDATE hangs -2867 -8461 Test read # 140 ident 399097 40401- 47707 against verified region 31406- 41785 - CANDIDATE hangs -5949 -9151 Test read # 144 ident 179044 41191- 47862 against verified region 31406- 41785 - CANDIDATE hangs -6099 -9934 Test read # 145 ident 179045 41200- 48101 against verified region 31406- 41785 - CANDIDATE hangs -6326 -9942 Found appropriate intersecting read. createUnitigs()-- read 372719 place 0 edgeTo tig 35 reads # 84 249815- 179045 verified 41785- 31406 position 41814- 31305 covered 0- 10442 BREAK at pos 39076 read 312663 isLow 1 sim 0.9770 createUnitigs()-- read 372719 place 1 edgeTo tig 115 reads # 1 372718- 469093 verified 35- 10489 position 0- 10489 covered 20- 10442 SELF EXPECTED_5' Scan reads from #15 to #16 for low coordinate in verified region 3110-7950 Test read # 15 ident 197741 3110- 5515 against verified region 3110- 7950 Test read # 16 ident 329467 3177- 7950 against verified region 3110- 7950 - CANDIDATE hangs 2312 -3403 Failed to find appropriate intersecting read. createUnitigs()-- read 372719 place 2 edgeTo tig 113114 reads # 15 197741- 329467 verified 7950- 3110 position 10244- -226 covered 2312- 7106 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #83 to #128 for high coordinate in verified region 30401-32614 Test read # 83 ident 121373 24500- 32614 against verified region 30401- 32614 Test read # 84 ident 249815 25439- 32153 against verified region 30401- 32614 - CANDIDATE hangs 5007 4950 - SAVED Test read # 87 ident 28642 25474- 30954 against verified region 30401- 32614 - CANDIDATE hangs 6190 4919 Test read # 90 ident 243015 25479- 31520 against verified region 30401- 32614 - CANDIDATE hangs 5628 4899 Test read # 96 ident 327134 25556- 31659 against verified region 30401- 32614 - CANDIDATE hangs 5495 4837 Test read # 102 ident 384193 26672- 31896 against verified region 30401- 32614 - CANDIDATE hangs 5256 3721 Test read # 103 ident 384192 26676- 31946 against verified region 30401- 32614 - CANDIDATE hangs 5198 3715 Test read # 104 ident 384191 26684- 31917 against verified region 30401- 32614 - CANDIDATE hangs 5234 3703 Test read # 109 ident 152433 26982- 31302 against verified region 30401- 32614 - CANDIDATE hangs 5837 3408 Test read # 112 ident 171441 27085- 32051 against verified region 30401- 32614 - CANDIDATE hangs 5105 3298 Test read # 114 ident 182100 27233- 31093 against verified region 30401- 32614 - CANDIDATE hangs 6047 3158 Test read # 116 ident 384194 27622- 31838 against verified region 30401- 32614 - CANDIDATE hangs 5313 2797 Test read # 119 ident 253643 27934- 31294 against verified region 30401- 32614 - CANDIDATE hangs 5852 2478 Test read # 120 ident 193158 28097- 32468 against verified region 30401- 32614 - CANDIDATE hangs 4688 2319 - SAVED Test read # 121 ident 268684 28227- 32586 against verified region 30401- 32614 - CANDIDATE hangs 4576 2193 - SAVED Test read # 126 ident 125166 28822- 31375 against verified region 30401- 32614 - CANDIDATE hangs 5782 1618 Test read # 128 ident 182101 29299- 31102 against verified region 30401- 32614 - CANDIDATE hangs 6039 1115 Found appropriate intersecting read. createUnitigs()-- read 469093 place 0 edgeTo tig 35 reads # 83 121373- 182101 verified 32614- 30401 position 37152- 30401 covered 4576- 6699 BREAK at pos 32586 read 268684 isLow 0 sim 1.0000 createUnitigs()-- read 469093 place 1 edgeTo tig 115 reads # 0 372719- 414874 verified 4812- 10494 position 4812- 11507 covered 0- 5685 SELF EXPECTED_3' Scan reads from #16 to #16 for high coordinate in verified region 3177-5417 Test read # 16 ident 329467 3177- 7950 against verified region 3177- 5417 Failed to find appropriate intersecting read. createUnitigs()-- read 469093 place 2 edgeTo tig 113114 reads # 16 329467- 329467 verified 5417- 3177 position 5417- -1232 covered 0- 2290 EXPECTED_3' NO_OVERLAPS Scan reads from #1 to #1 for high coordinate in verified region 1825-3175 Test read # 1 ident 111828 1825- 9509 against verified region 1825- 3175 Failed to find appropriate intersecting read. createUnitigs()-- read 469093 place 3 edgeTo tig 113115 reads # 1 111828- 111828 verified 3175- 1825 position 3175- -3523 covered 0- 1351 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 120 len 52787 first read 331659 with 12 placements - last read 358923 with 1 placements createUnitigs()-- read 331659 place 0 edgeTo tig 120 reads # 1 331661- 102922 verified 1- 5696 position 0- 5696 covered 0- 5690 SELF Scan reads from #65 to #76 for high coordinate in verified region 22920-24093 Test read # 65 ident 535801 22920- 24526 against verified region 22920- 24093 Test read # 66 ident 562457 22929- 34448 against verified region 22920- 24093 Test read # 68 ident 469518 22932- 24513 against verified region 22920- 24093 Test read # 69 ident 53553 22932- 24414 against verified region 22920- 24093 Test read # 70 ident 197527 22938- 24518 against verified region 22920- 24093 Test read # 71 ident 687899 22957- 24733 against verified region 22920- 24093 Test read # 73 ident 299123 23052- 24514 against verified region 22920- 24093 Test read # 74 ident 159761 23081- 24419 against verified region 22920- 24093 Test read # 75 ident 657096 23160- 31128 against verified region 22920- 24093 Test read # 76 ident 701022 23325- 30110 against verified region 22920- 24093 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 1 edgeTo tig 1995 reads # 65 535801- 701022 verified 22920- 24093 position 18387- 24093 covered 4541- 5690 EXPECTED_5' NO_OVERLAPS Scan reads from #22 to #22 for low coordinate in verified region 16921-17435 Test read # 22 ident 275847 11420- 17435 against verified region 16921- 17435 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 2 edgeTo tig 7895 reads # 22 275847- 275847 verified 17435- 16921 position 22606- 16921 covered 5171- 5690 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #2 for high coordinate in verified region 0-1169 Test read # 0 ident 141685 0- 5105 against verified region 0- 1169 Test read # 1 ident 258248 25- 2764 against verified region 0- 1169 Test read # 2 ident 141686 94- 4974 against verified region 0- 1169 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 3 edgeTo tig 15770 reads # 0 141685- 141686 verified 0- 1169 position -4530- 1169 covered 4543- 5690 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #3 for high coordinate in verified region 196-1214 Test read # 2 ident 142057 196- 9820 against verified region 196- 1214 Test read # 3 ident 142058 213- 5890 against verified region 196- 1214 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 4 edgeTo tig 21663 reads # 2 142057- 142058 verified 196- 1214 position -4502- 1214 covered 4700- 5690 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #0 for high coordinate in verified region 0-538 Test read # 0 ident 146640 0- 6105 against verified region 0- 538 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 5 edgeTo tig 34552 reads # 0 146640- 146640 verified 0- 538 position -5149- 538 covered 5149- 5690 EXPECTED_5' NO_OVERLAPS Scan reads from #4 to #5 for high coordinate in verified region 30-1134 Test read # 4 ident 606881 30- 6059 against verified region 30- 1134 Test read # 5 ident 606880 38- 6074 against verified region 30- 1134 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 6 edgeTo tig 45339 reads # 4 606881- 606880 verified 30- 1134 position -4527- 1134 covered 4558- 5690 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #10 to #10 for high coordinate in verified region 14125-15268 Test read # 10 ident 720661 14125- 15705 against verified region 14125- 15268 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 7 edgeTo tig 113170 reads # 10 720661- 720661 verified 14125- 15268 position 9583- 15268 covered 4542- 5690 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for low coordinate in verified region 5315-6482 Test read # 0 ident 225728 0- 6482 against verified region 5315- 6482 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 8 edgeTo tig 113905 reads # 0 225728- 225728 verified 6482- 5315 position 11069- 5315 covered 4587- 5690 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #0 for low coordinate in verified region 1764-2955 Test read # 0 ident 703629 0- 2955 against verified region 1764- 2955 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 9 edgeTo tig 114002 reads # 0 703629- 703629 verified 2955- 1764 position 7495- 1764 covered 4540- 5690 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #11 for low coordinate in verified region 428-1611 Test read # 2 ident 692136 6- 1593 against verified region 428- 1611 Test read # 3 ident 299561 9- 1604 against verified region 428- 1611 Test read # 4 ident 656914 13- 1604 against verified region 428- 1611 Test read # 6 ident 522225 37- 1605 against verified region 428- 1611 Test read # 7 ident 300295 44- 1611 against verified region 428- 1611 Test read # 8 ident 276460 59- 1611 against verified region 428- 1611 Test read # 9 ident 430534 138- 1259 against verified region 428- 1611 Test read # 10 ident 377136 159- 1523 against verified region 428- 1611 Test read # 11 ident 278303 208- 1563 against verified region 428- 1611 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 10 edgeTo tig 114003 reads # 2 692136- 278303 verified 1611- 428 position 6150- 428 covered 4543- 5690 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 0-849 Test read # 0 ident 619122 0- 5964 against verified region 0- 849 Failed to find appropriate intersecting read. createUnitigs()-- read 331659 place 11 edgeTo tig 114062 reads # 0 619122- 619122 verified 0- 849 position -4845- 849 covered 4845- 5690 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 358923 place 0 edgeTo tig 120 reads # 50 405063- 640636 verified 51234- 41975 position 52786- 41975 covered 1554- 10781 SELF EXPECTED_5' createUnitigs()-- tig 123 len 17160 first read 529498 with 3 placements - last read 361212 with 6 placements createUnitigs()-- read 529498 place 0 edgeTo tig 123 reads # 1 529499- 484781 verified 890- 7254 position 80- 7254 covered 888- 7155 SELF EXPECTED_5' Scan reads from #10 to #10 for high coordinate in verified region 7375-14324 Test read # 10 ident 498346 5367- 14324 against verified region 7375- 14324 Failed to find appropriate intersecting read. createUnitigs()-- read 529498 place 1 edgeTo tig 123 reads # 10 498346- 498346 verified 7375- 14324 position 7375- 14521 covered 0- 6958 NO_OVERLAPS Scan reads from #9 to #17 for high coordinate in verified region 10834-17160 Test read # 9 ident 60980 4974- 11161 against verified region 10834- 17160 - CANDIDATE hangs -5064 -6036 - SAVED Test read # 10 ident 498346 5367- 14324 against verified region 10834- 17160 - CANDIDATE hangs -2008 -197 - SAVED Test read # 11 ident 185522 5407- 14271 against verified region 10834- 17160 - CANDIDATE hangs -6981 -5353 Test read # 12 ident 60981 5421- 11330 against verified region 10834- 17160 - CANDIDATE hangs -4787 -6055 Test read # 13 ident 716027 6252- 13017 against verified region 10834- 17160 - CANDIDATE hangs -5287 -5732 Test read # 15 ident 361212 8069- 17160 against verified region 10834- 17160 Test read # 17 ident 529496 9781- 13906 against verified region 10834- 17160 - CANDIDATE hangs 0 -3101 Found appropriate intersecting read. createUnitigs()-- read 529498 place 2 edgeTo tig 123 reads # 9 60980- 529496 verified 10834- 17160 position 10834- 18056 covered 0- 5941 BREAK at pos 14324 read 498346 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #0 to #1 for low coordinate in verified region 0-5988 Test read # 0 ident 529498 0- 7189 against verified region 0- 5988 Test read # 1 ident 529499 890- 7250 against verified region 0- 5988 - CANDIDATE hangs 3864 1248 - SAVED Found appropriate intersecting read. createUnitigs()-- read 361212 place 0 edgeTo tig 123 reads # 0 529498- 529499 verified 0- 5988 position -2978- 5988 covered 2983- 9031 BREAK at pos 890 read 529499 isLow 1 sim 0.5529 createUnitigs()-- read 361212 place 1 edgeTo tig 123 reads # 14 95433- 95433 verified 6419- 9441 position 883- 9919 covered 5536- 8553 SELF EXPECTED_3' createUnitigs()-- read 361212 place 2 edgeTo tig 123 reads # 10 498346- 498346 verified 5367- 13463 position 4388- 13463 covered 979- 9031 SELF createUnitigs()-- read 361212 place 3 edgeTo tig 123 reads # 8 161234- 694410 verified 7633- 16276 position 7633- 16724 covered 0- 8191 SELF EXPECTED_3' createUnitigs()-- read 361212 place 4 edgeTo tig 123 reads # 6 484780- 484781 verified 13893- 15574 position 13893- 22994 covered 0- 1319 SELF EXPECTED_3' Scan reads from #0 to #14 for high coordinate in verified region 2921-11044 Test read # 0 ident 216085 0- 8597 against verified region 2921- 11044 - CANDIDATE hangs 3382 2920 - SAVED Test read # 1 ident 216084 66- 8602 against verified region 2921- 11044 - CANDIDATE hangs 3379 2852 - SAVED Test read # 2 ident 267502 1069- 6240 against verified region 2921- 11044 - CANDIDATE hangs 5772 1852 Test read # 3 ident 267504 1347- 6841 against verified region 2921- 11044 - CANDIDATE hangs 5040 1579 Test read # 4 ident 415964 1694- 10460 against verified region 2921- 11044 - CANDIDATE hangs 1269 1227 - SAVED Test read # 5 ident 415966 1710- 10457 against verified region 2921- 11044 - CANDIDATE hangs 1269 1210 Test read # 6 ident 415965 1736- 8726 against verified region 2921- 11044 - CANDIDATE hangs 3260 1185 Test read # 7 ident 216083 1887- 8583 against verified region 2921- 11044 - CANDIDATE hangs 3399 1037 Test read # 8 ident 149614 2320- 11044 against verified region 2921- 11044 Test read # 9 ident 546139 2825- 9417 against verified region 2921- 11044 - CANDIDATE hangs 2578 94 Test read # 10 ident 546140 2853- 10243 against verified region 2921- 11044 - CANDIDATE hangs 1488 71 Test read # 11 ident 220937 3610- 10833 against verified region 2921- 11044 - CANDIDATE hangs 896 -688 Test read # 12 ident 220938 3613- 10798 against verified region 2921- 11044 - CANDIDATE hangs 925 -688 Test read # 13 ident 220936 3651- 10822 against verified region 2921- 11044 - CANDIDATE hangs 896 -725 Test read # 14 ident 220935 3752- 7429 against verified region 2921- 11044 - CANDIDATE hangs 4463 -832 Found appropriate intersecting read. createUnitigs()-- read 361212 place 5 edgeTo tig 907 reads # 0 216085- 220935 verified 11044- 2921 position 11852- 2921 covered 676- 9031 BREAK at pos 10460 read 415964 isLow 0 sim 0.6180 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 126 len 11417 first read 663797 with 6 placements - last read 550406 with 1 placements createUnitigs()-- read 663797 place 0 edgeTo tig 126 reads # 1 587687- 464990 verified 226- 4133 position 3- 4133 covered 226- 4120 SELF EXPECTED_5' Scan reads from #16 to #57 for high coordinate in verified region 19035-21232 Test read # 16 ident 514100 12002- 20566 against verified region 19035- 21232 - CANDIDATE hangs -7017 -2664 - SAVED Test read # 17 ident 514099 12292- 20579 against verified region 19035- 21232 - CANDIDATE hangs -6729 -2655 - SAVED Test read # 18 ident 685971 13528- 20133 against verified region 19035- 21232 - CANDIDATE hangs -5472 -3095 Test read # 30 ident 300227 14351- 20918 against verified region 19035- 21232 - CANDIDATE hangs -4694 -2312 - SAVED Test read # 31 ident 264741 14463- 20027 against verified region 19035- 21232 - CANDIDATE hangs -4576 -3200 Test read # 34 ident 394095 15201- 20409 against verified region 19035- 21232 - CANDIDATE hangs -3858 -2828 Test read # 35 ident 565321 15314- 19899 against verified region 19035- 21232 - CANDIDATE hangs -3742 -3326 Test read # 37 ident 531754 15585- 20458 against verified region 19035- 21232 - CANDIDATE hangs -3045 -2313 Test read # 38 ident 660626 15728- 20911 against verified region 19035- 21232 - CANDIDATE hangs -3343 -2315 Test read # 39 ident 494000 15739- 20257 against verified region 19035- 21232 - CANDIDATE hangs -3327 -2980 Test read # 41 ident 655061 16110- 21232 against verified region 19035- 21232 Test read # 42 ident 190923 16141- 20884 against verified region 19035- 21232 - CANDIDATE hangs -2937 -2334 Test read # 44 ident 304932 16492- 19894 against verified region 19035- 21232 - CANDIDATE hangs -2570 -3321 Test read # 45 ident 540570 17230- 19925 against verified region 19035- 21232 - CANDIDATE hangs -1851 -3292 Test read # 52 ident 513079 17865- 20892 against verified region 19035- 21232 - CANDIDATE hangs -1211 -2315 Test read # 53 ident 413181 18330- 20484 against verified region 19035- 21232 - CANDIDATE hangs -724 -2711 Test read # 54 ident 678014 18386- 20900 against verified region 19035- 21232 - CANDIDATE hangs -686 -2314 Test read # 55 ident 60024 18444- 20420 against verified region 19035- 21232 - CANDIDATE hangs -634 -2786 Test read # 57 ident 243463 18739- 20883 against verified region 19035- 21232 - CANDIDATE hangs -343 -2313 Found appropriate intersecting read. createUnitigs()-- read 663797 place 1 edgeTo tig 3048 reads # 16 514100- 243463 verified 19035- 21232 position 19035- 23196 covered 0- 2123 BREAK at pos 20918 read 300227 isLow 0 sim 1.0000 Scan reads from #1 to #6 for low coordinate in verified region 398-2597 Test read # 1 ident 278292 398- 5595 against verified region 398- 2597 Test read # 4 ident 569935 725- 4840 against verified region 398- 2597 - CANDIDATE hangs -2334 -2359 - SAVED Test read # 5 ident 525883 834- 5031 against verified region 398- 2597 - CANDIDATE hangs -2368 -2313 Test read # 6 ident 447486 1206- 3894 against verified region 398- 2597 - CANDIDATE hangs -892 -2346 Found appropriate intersecting read. createUnitigs()-- read 663797 place 2 edgeTo tig 113092 reads # 1 278292- 447486 verified 2597- 398 position 2597- -1542 covered 0- 1807 BREAK at pos 725 read 569935 isLow 1 sim 1.0000 Scan reads from #0 to #2 for low coordinate in verified region 0-1747 Test read # 0 ident 288976 0- 16004 against verified region 0- 1747 Test read # 1 ident 288975 4- 10560 against verified region 0- 1747 - CANDIDATE hangs -8819 -2399 - SAVED Test read # 2 ident 723069 458- 6389 against verified region 0- 1747 - CANDIDATE hangs -4643 -2841 Found appropriate intersecting read. createUnitigs()-- read 663797 place 3 edgeTo tig 113093 reads # 0 288976- 723069 verified 1747- 0 position 1747- -2393 covered 0- 1721 NOT_SIMILAR Scan reads from #0 to #0 for high coordinate in verified region 6559-8178 Test read # 0 ident 171455 0- 8178 against verified region 6559- 8178 Failed to find appropriate intersecting read. createUnitigs()-- read 663797 place 4 edgeTo tig 113599 reads # 0 171455- 171455 verified 6559- 8178 position 6559- 10713 covered 0- 1585 NO_OVERLAPS Scan reads from #0 to #4 for high coordinate in verified region 6031-7398 Test read # 0 ident 467180 0- 7398 against verified region 6031- 7398 Test read # 1 ident 409315 3174- 6904 against verified region 6031- 7398 - CANDIDATE hangs -2849 -3283 - SAVED Test read # 4 ident 719736 5312- 7370 against verified region 6031- 7398 - CANDIDATE hangs -736 -2821 - SAVED Found appropriate intersecting read. createUnitigs()-- read 663797 place 5 edgeTo tig 113600 reads # 0 467180- 719736 verified 6031- 7398 position 6031- 10187 covered 0- 1335 BREAK at pos 7370 read 719736 isLow 0 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- read 550406 place 0 edgeTo tig 126 reads # 3 100582- 43751 verified 8943- 11337 position 8943- 11414 covered 0- 2326 SELF EXPECTED_3' createUnitigs()-- tig 127 len 28448 first read 583924 with 1 placements - last read 649999 with 6 placements createUnitigs()-- read 583924 place 0 edgeTo tig 127 reads # 1 583923- 533476 verified 9936- 29 position 9936- 29 covered 0- 9903 SELF Scan reads from #4 to #15 for low coordinate in verified region 7967-9542 Test read # 4 ident 312070 2882- 8515 against verified region 7967- 9542 Test read # 5 ident 312069 2890- 8502 against verified region 7967- 9542 Test read # 7 ident 312071 2912- 8502 against verified region 7967- 9542 Test read # 8 ident 514278 3078- 9533 against verified region 7967- 9542 Test read # 9 ident 514281 3082- 9542 against verified region 7967- 9542 Test read # 10 ident 514283 3083- 9542 against verified region 7967- 9542 Test read # 11 ident 514279 3084- 9540 against verified region 7967- 9542 Test read # 12 ident 514277 3088- 9528 against verified region 7967- 9542 Test read # 13 ident 514280 3096- 9534 against verified region 7967- 9542 Test read # 15 ident 312072 3121- 8509 against verified region 7967- 9542 Failed to find appropriate intersecting read. createUnitigs()-- read 649999 place 0 edgeTo tig 12 reads # 4 312070- 312072 verified 7967- 9542 position 7967- 14147 covered 0- 1562 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #3 for low coordinate in verified region 4922-6511 Test read # 0 ident 202548 0- 6511 against verified region 4922- 6511 Test read # 2 ident 202549 7- 6505 against verified region 4922- 6511 Test read # 3 ident 202550 96- 6511 against verified region 4922- 6511 Failed to find appropriate intersecting read. createUnitigs()-- read 649999 place 1 edgeTo tig 20 reads # 0 202548- 202550 verified 4922- 6511 position 4922- 11142 covered 0- 1538 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 649999 place 2 edgeTo tig 127 reads # 18 594823- 467767 verified 22244- 28440 position 22244- 28440 covered 0- 6171 SELF Scan reads from #0 to #38 for low coordinate in verified region 5230-10875 Test read # 0 ident 594004 0- 10187 against verified region 5230- 10875 Test read # 2 ident 594006 94- 10176 against verified region 5230- 10875 Test read # 3 ident 544635 2929- 10845 against verified region 5230- 10875 Test read # 4 ident 544640 2934- 10843 against verified region 5230- 10875 Test read # 5 ident 544636 2941- 10844 against verified region 5230- 10875 Test read # 6 ident 544638 2956- 10842 against verified region 5230- 10875 Test read # 7 ident 186712 3786- 9897 against verified region 5230- 10875 Test read # 8 ident 594005 3792- 10189 against verified region 5230- 10875 Test read # 9 ident 398947 3860- 6227 against verified region 5230- 10875 Test read # 10 ident 685671 3906- 7908 against verified region 5230- 10875 Test read # 11 ident 670234 3949- 10634 against verified region 5230- 10875 Test read # 12 ident 670233 3970- 10400 against verified region 5230- 10875 Test read # 13 ident 601816 3999- 9657 against verified region 5230- 10875 Test read # 14 ident 428686 4045- 7386 against verified region 5230- 10875 Test read # 15 ident 665461 4065- 7562 against verified region 5230- 10875 Test read # 16 ident 575325 4086- 5824 against verified region 5230- 10875 Test read # 17 ident 356284 4103- 7943 against verified region 5230- 10875 Test read # 18 ident 201244 4117- 7355 against verified region 5230- 10875 Test read # 19 ident 141778 4152- 6205 against verified region 5230- 10875 Test read # 20 ident 553788 4165- 7118 against verified region 5230- 10875 Test read # 21 ident 382027 4178- 7297 against verified region 5230- 10875 Test read # 22 ident 683629 4217- 6272 against verified region 5230- 10875 Test read # 24 ident 305268 4246- 6250 against verified region 5230- 10875 Test read # 25 ident 382028 4261- 7144 against verified region 5230- 10875 Test read # 26 ident 562968 4326- 10875 against verified region 5230- 10875 Test read # 28 ident 331347 4396- 6255 against verified region 5230- 10875 Test read # 30 ident 2699 4814- 6626 against verified region 5230- 10875 Test read # 31 ident 493620 6111- 7250 against verified region 5230- 10875 - CANDIDATE hangs 840 -4198 Test read # 32 ident 95543 6426- 9834 against verified region 5230- 10875 - CANDIDATE hangs 1166 -1594 Test read # 34 ident 493393 8247- 10451 against verified region 5230- 10875 - CANDIDATE hangs 3012 -956 Test read # 36 ident 217629 8597- 10466 against verified region 5230- 10875 - CANDIDATE hangs 3369 -931 Test read # 37 ident 500863 8691- 10148 against verified region 5230- 10875 - CANDIDATE hangs 3455 -1255 Test read # 38 ident 36852 8727- 10361 against verified region 5230- 10875 - CANDIDATE hangs 3501 -1047 Failed to find appropriate intersecting read. createUnitigs()-- read 649999 place 3 edgeTo tig 1390 reads # 0 594004- 36852 verified 5230- 10875 position 5230- 11429 covered 0- 5605 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #7 for low coordinate in verified region 0-3096 Test read # 0 ident 123861 0- 4748 against verified region 0- 3096 Test read # 1 ident 548517 338- 1965 against verified region 0- 3096 - CANDIDATE hangs 3485 -1093 Test read # 2 ident 436829 645- 3408 against verified region 0- 3096 - CANDIDATE hangs 3778 338 - SAVED Test read # 3 ident 274132 696- 9460 against verified region 0- 3096 - CANDIDATE hangs 3899 6362 Test read # 4 ident 123862 827- 3906 against verified region 0- 3096 - CANDIDATE hangs 3955 830 Test read # 5 ident 161368 1882- 8238 against verified region 0- 3096 - CANDIDATE hangs 5046 5203 Test read # 6 ident 486798 2013- 8192 against verified region 0- 3096 - CANDIDATE hangs 5143 5083 Test read # 7 ident 599994 2284- 9052 against verified region 0- 3096 - CANDIDATE hangs 5232 5789 Found appropriate intersecting read. createUnitigs()-- read 649999 place 4 edgeTo tig 113066 reads # 0 123861- 599994 verified 0- 3096 position -3125- 3096 covered 3148- 6171 BREAK at pos 645 read 436829 isLow 1 sim 0.7917 Scan reads from #52 to #77 for high coordinate in verified region 8746-11664 Test read # 52 ident 528077 8746- 12874 against verified region 8746- 11664 Test read # 53 ident 632003 8913- 12951 against verified region 8746- 11664 Test read # 54 ident 718205 9257- 10564 against verified region 8746- 11664 - CANDIDATE hangs 1056 -3835 Test read # 55 ident 117329 9292- 13145 against verified region 8746- 11664 Test read # 59 ident 428687 9559- 12940 against verified region 8746- 11664 Test read # 60 ident 219700 9568- 10786 against verified region 8746- 11664 - CANDIDATE hangs 844 -4143 Test read # 61 ident 601542 9583- 12586 against verified region 8746- 11664 Test read # 65 ident 296350 9676- 12788 against verified region 8746- 11664 Test read # 66 ident 296351 9718- 13039 against verified region 8746- 11664 Test read # 67 ident 452352 9760- 12570 against verified region 8746- 11664 Test read # 69 ident 20532 9931- 12911 against verified region 8746- 11664 Test read # 71 ident 681143 9972- 16415 against verified region 8746- 11664 Test read # 74 ident 490213 10292- 12939 against verified region 8746- 11664 Test read # 77 ident 13675 10739- 12715 against verified region 8746- 11664 Failed to find appropriate intersecting read. createUnitigs()-- read 649999 place 5 edgeTo tig 113067 reads # 52 528077- 13675 verified 11664- 8746 position 11664- 5433 covered 0- 2862 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 129 len 7653 first read 605412 with 4 placements - last read 28351 with 4 placements Scan reads from #235 to #259 for low coordinate in verified region 37686-41733 Test read # 235 ident 575879 30231- 40151 against verified region 37686- 41733 Test read # 236 ident 575878 30233- 40151 against verified region 37686- 41733 Test read # 237 ident 575877 30235- 40148 against verified region 37686- 41733 Test read # 238 ident 575876 30237- 40147 against verified region 37686- 41733 Test read # 239 ident 180839 30799- 40903 against verified region 37686- 41733 Test read # 240 ident 575880 30875- 40147 against verified region 37686- 41733 Test read # 241 ident 284110 32137- 39399 against verified region 37686- 41733 Test read # 242 ident 56209 34357- 41733 against verified region 37686- 41733 Test read # 243 ident 56213 34361- 41694 against verified region 37686- 41733 Test read # 244 ident 56211 34362- 41722 against verified region 37686- 41733 Test read # 245 ident 56212 34373- 41721 against verified region 37686- 41733 Test read # 246 ident 56215 34376- 41730 against verified region 37686- 41733 Test read # 247 ident 56210 34376- 41724 against verified region 37686- 41733 Test read # 248 ident 56214 34497- 41728 against verified region 37686- 41733 Test read # 249 ident 353118 36878- 39842 against verified region 37686- 41733 Test read # 250 ident 202788 38154- 39411 against verified region 37686- 41733 - CANDIDATE hangs 5077 -460 Test read # 252 ident 658461 38277- 39883 against verified region 37686- 41733 - CANDIDATE hangs 4620 -589 Test read # 255 ident 400473 38408- 40858 against verified region 37686- 41733 - CANDIDATE hangs 3652 -704 Test read # 259 ident 56216 40186- 41698 against verified region 37686- 41733 - CANDIDATE hangs 2807 -2451 Failed to find appropriate intersecting read. createUnitigs()-- read 605412 place 0 edgeTo tig 98 reads # 235 575879- 56216 verified 41733- 37686 position 44501- 37686 covered 2774- 6761 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 605412 place 1 edgeTo tig 129 reads # 1 605414- 676069 verified 17- 6814 position 17- 6814 covered 7- 6761 SELF EXPECTED_5' Scan reads from #30 to #36 for high coordinate in verified region 12048-14955 Test read # 30 ident 506294 12048- 18795 against verified region 12048- 14955 Test read # 31 ident 557957 12303- 15760 against verified region 12048- 14955 Test read # 33 ident 557956 12612- 15792 against verified region 12048- 14955 Test read # 34 ident 148771 12822- 18986 against verified region 12048- 14955 Test read # 35 ident 489046 12832- 15940 against verified region 12048- 14955 Test read # 36 ident 489043 12854- 18396 against verified region 12048- 14955 Failed to find appropriate intersecting read. createUnitigs()-- read 605412 place 2 edgeTo tig 877 reads # 30 506294- 489043 verified 12048- 14955 position 8151- 14955 covered 3905- 6761 EXPECTED_5' NO_OVERLAPS Scan reads from #44 to #45 for low coordinate in verified region 22419-23551 Test read # 44 ident 665763 15772- 23551 against verified region 22419- 23551 Test read # 45 ident 665764 15938- 23497 against verified region 22419- 23551 Failed to find appropriate intersecting read. createUnitigs()-- read 605412 place 3 edgeTo tig 1565 reads # 44 665763- 665764 verified 23551- 22419 position 29201- 22419 covered 5662- 6761 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #235 to #257 for high coordinate in verified region 36855-40561 Test read # 235 ident 575879 30231- 40151 against verified region 36855- 40561 - CANDIDATE hangs -6603 -400 - SAVED Test read # 236 ident 575878 30233- 40151 against verified region 36855- 40561 - CANDIDATE hangs -6602 -399 Test read # 237 ident 575877 30235- 40148 against verified region 36855- 40561 - CANDIDATE hangs -6600 -401 Test read # 238 ident 575876 30237- 40147 against verified region 36855- 40561 - CANDIDATE hangs -6600 -403 Test read # 239 ident 180839 30799- 40903 against verified region 36855- 40561 Test read # 240 ident 575880 30875- 40147 against verified region 36855- 40561 - CANDIDATE hangs -5976 -403 Test read # 241 ident 284110 32137- 39399 against verified region 36855- 40561 - CANDIDATE hangs -4720 -1138 Test read # 242 ident 56209 34357- 41733 against verified region 36855- 40561 Test read # 243 ident 56213 34361- 41694 against verified region 36855- 40561 Test read # 244 ident 56211 34362- 41722 against verified region 36855- 40561 Test read # 245 ident 56212 34373- 41721 against verified region 36855- 40561 Test read # 246 ident 56215 34376- 41730 against verified region 36855- 40561 Test read # 247 ident 56210 34376- 41724 against verified region 36855- 40561 Test read # 248 ident 56214 34497- 41728 against verified region 36855- 40561 Test read # 249 ident 353118 36878- 39842 against verified region 36855- 40561 - CANDIDATE hangs 22 -701 Test read # 250 ident 202788 38154- 39411 against verified region 36855- 40561 - CANDIDATE hangs 1291 -1126 Test read # 251 ident 400474 38268- 44115 against verified region 36855- 40561 Test read # 252 ident 658461 38277- 39883 against verified region 36855- 40561 - CANDIDATE hangs 1424 -671 Test read # 253 ident 400475 38284- 44423 against verified region 36855- 40561 Test read # 254 ident 400476 38384- 44422 against verified region 36855- 40561 Test read # 255 ident 400473 38408- 40858 against verified region 36855- 40561 Test read # 256 ident 76014 39212- 43581 against verified region 36855- 40561 Test read # 257 ident 431993 39772- 43681 against verified region 36855- 40561 Found appropriate intersecting read. createUnitigs()-- read 28351 place 0 edgeTo tig 98 reads # 235 575879- 431993 verified 36855- 40561 position 36855- 40561 covered 0- 3649 BREAK at pos 40151 read 575879 isLow 0 sim 1.0000 createUnitigs()-- read 28351 place 1 edgeTo tig 129 reads # 0 605412- 676069 verified 7650- 3969 position 7650- 3969 covered 0- 3649 SELF Scan reads from #16 to #36 for low coordinate in verified region 12075-15765 Test read # 16 ident 446857 6445- 12597 against verified region 12075- 15765 Test read # 17 ident 446856 6468- 12733 against verified region 12075- 15765 Test read # 24 ident 489042 10576- 12737 against verified region 12075- 15765 Test read # 25 ident 489045 10582- 12747 against verified region 12075- 15765 Test read # 27 ident 489044 10669- 18296 against verified region 12075- 15765 Test read # 30 ident 506294 12048- 18795 against verified region 12075- 15765 Test read # 32 ident 168298 12336- 15425 against verified region 12075- 15765 - CANDIDATE hangs 356 -226 Test read # 36 ident 489043 12854- 18396 against verified region 12075- 15765 - CANDIDATE hangs -2605 -750 - SAVED Found appropriate intersecting read. createUnitigs()-- read 28351 place 2 edgeTo tig 877 reads # 16 446857- 489043 verified 15765- 12075 position 15765- 12075 covered 0- 3649 BREAK at pos 12854 read 489043 isLow 1 sim 0.9840 Scan reads from #44 to #45 for high coordinate in verified region 21595-23551 Test read # 44 ident 665763 15772- 23551 against verified region 21595- 23551 Test read # 45 ident 665764 15938- 23497 against verified region 21595- 23551 - CANDIDATE hangs -5642 -1743 - SAVED Found appropriate intersecting read. createUnitigs()-- read 28351 place 3 edgeTo tig 1565 reads # 44 665763- 665764 verified 21595- 23551 position 21595- 25252 covered 0- 1936 NOT_SIMILAR createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 133 len 22158 first read 244465 with 14 placements - last read 9364 with 24 placements createUnitigs()-- read 244465 place 0 edgeTo tig 133 reads # 3 595206- 595206 verified 3276- 5137 position -2893- 5137 covered 6169- 7940 SELF EXPECTED_5' createUnitigs()-- read 244465 place 1 edgeTo tig 133 reads # 4 233547- 233547 verified 5546- 6424 position -1593- 6424 covered 7139- 7940 SELF EXPECTED_5' createUnitigs()-- read 244465 place 2 edgeTo tig 133 reads # 1 244466- 82823 verified 1112- 9104 position 1112- 9104 covered 0- 7940 SELF Scan reads from #21 to #23 for high coordinate in verified region 10954-13377 Test read # 21 ident 298837 10954- 12726 against verified region 10954- 13377 - CANDIDATE hangs 6165 -15 Test read # 22 ident 212150 11913- 15168 against verified region 10954- 13377 Test read # 23 ident 509714 12321- 14273 against verified region 10954- 13377 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 3 edgeTo tig 133 reads # 21 298837- 509714 verified 10954- 13377 position 5429- 13377 covered 6119- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #3 for low coordinate in verified region 3977-5610 Test read # 3 ident 570374 2034- 5610 against verified region 3977- 5610 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 4 edgeTo tig 2620 reads # 3 570374- 570374 verified 5610- 3977 position 11948- 3977 covered 6338- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #5 to #5 for low coordinate in verified region 6234-7798 Test read # 5 ident 329187 2255- 7798 against verified region 6234- 7798 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 5 edgeTo tig 2620 reads # 5 329187- 329187 verified 7798- 6234 position 14212- 6234 covered 6414- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #2 for low coordinate in verified region 7463-9242 Test read # 2 ident 68071 1802- 9242 against verified region 7463- 9242 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 6 edgeTo tig 2620 reads # 2 68071- 68071 verified 9242- 7463 position 15503- 7463 covered 6261- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #4 to #135 for low coordinate in verified region 11166-16316 Test read # 4 ident 253522 2795- 12838 against verified region 11166- 16316 Test read # 9 ident 253521 3498- 13635 against verified region 11166- 16316 Test read # 10 ident 643676 3528- 11969 against verified region 11166- 16316 Test read # 11 ident 253523 3607- 13606 against verified region 11166- 16316 Test read # 14 ident 648033 3967- 16316 against verified region 11166- 16316 Test read # 15 ident 538878 3971- 11790 against verified region 11166- 16316 Test read # 17 ident 27262 4013- 12134 against verified region 11166- 16316 Test read # 20 ident 606104 4103- 10971 against verified region 11166- 16316 Test read # 22 ident 352719 4371- 9345 against verified region 11166- 16316 Test read # 24 ident 655734 4528- 12150 against verified region 11166- 16316 Test read # 29 ident 653680 4625- 12825 against verified region 11166- 16316 Test read # 32 ident 236445 4745- 10798 against verified region 11166- 16316 Test read # 36 ident 17669 4838- 10350 against verified region 11166- 16316 Test read # 37 ident 104365 4852- 12346 against verified region 11166- 16316 Test read # 41 ident 653678 5004- 12847 against verified region 11166- 16316 Test read # 57 ident 504574 5762- 10148 against verified region 11166- 16316 Test read # 59 ident 632971 6004- 13149 against verified region 11166- 16316 Test read # 73 ident 648034 6689- 15091 against verified region 11166- 16316 Test read # 79 ident 546816 6907- 14291 against verified region 11166- 16316 Test read # 80 ident 558617 6920- 8811 against verified region 11166- 16316 Test read # 90 ident 20716 7329- 13221 against verified region 11166- 16316 Test read # 92 ident 576608 7395- 10788 against verified region 11166- 16316 Test read # 96 ident 75071 7520- 13514 against verified region 11166- 16316 Test read # 108 ident 519102 8208- 16034 against verified region 11166- 16316 Test read # 110 ident 430276 8266- 13695 against verified region 11166- 16316 Test read # 112 ident 536188 8272- 13390 against verified region 11166- 16316 Test read # 114 ident 578617 8312- 14685 against verified region 11166- 16316 Test read # 117 ident 264523 8380- 11203 against verified region 11166- 16316 Test read # 135 ident 631933 8993- 16289 against verified region 11166- 16316 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 7 edgeTo tig 4499 reads # 4 253522- 631933 verified 16316- 11166 position 19159- 11166 covered 6034- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #21 to #21 for high coordinate in verified region 3647-5328 Test read # 21 ident 669607 3647- 9149 against verified region 3647- 5328 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 8 edgeTo tig 113109 reads # 21 669607- 669607 verified 3647- 5328 position -2689- 5328 covered 6336- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #4 to #5 for high coordinate in verified region 938-2936 Test read # 4 ident 544607 938- 10115 against verified region 938- 2936 Test read # 5 ident 347973 1153- 8144 against verified region 938- 2936 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 9 edgeTo tig 113201 reads # 4 544607- 347973 verified 938- 2936 position -5077- 2936 covered 6119- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #12 to #50 for high coordinate in verified region 2641-5838 Test read # 12 ident 219841 2641- 9633 against verified region 2641- 5838 Test read # 15 ident 659353 3481- 9947 against verified region 2641- 5838 Test read # 16 ident 340804 3564- 8494 against verified region 2641- 5838 Test read # 18 ident 659352 3830- 10279 against verified region 2641- 5838 Test read # 20 ident 659349 3902- 10372 against verified region 2641- 5838 Test read # 22 ident 104363 4003- 11416 against verified region 2641- 5838 Test read # 24 ident 104366 4042- 11526 against verified region 2641- 5838 Test read # 25 ident 104364 4178- 11639 against verified region 2641- 5838 Test read # 30 ident 659351 4555- 11009 against verified region 2641- 5838 Test read # 33 ident 661741 4689- 12140 against verified region 2641- 5838 Test read # 37 ident 385262 4922- 11365 against verified region 2641- 5838 Test read # 47 ident 598246 5766- 10239 against verified region 2641- 5838 Test read # 50 ident 82822 5975- 12478 against verified region 2641- 5838 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 10 edgeTo tig 113201 reads # 12 219841- 82822 verified 2641- 5838 position -2163- 5838 covered 6147- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #55 to #76 for high coordinate in verified region 6485-8719 Test read # 55 ident 357888 6485- 12025 against verified region 6485- 8719 Test read # 62 ident 659355 6945- 12137 against verified region 6485- 8719 Test read # 65 ident 553658 7045- 16052 against verified region 6485- 8719 Test read # 69 ident 20717 7390- 13339 against verified region 6485- 8719 Test read # 76 ident 298986 7796- 11360 against verified region 6485- 8719 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 11 edgeTo tig 113201 reads # 55 357888- 298986 verified 6485- 8719 position 755- 8719 covered 6107- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #34 to #34 for high coordinate in verified region 4856-6700 Test read # 34 ident 629732 4856- 12200 against verified region 4856- 6700 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 12 edgeTo tig 113218 reads # 34 629732- 629732 verified 4856- 6700 position -1327- 6700 covered 6183- 7940 EXPECTED_5' NO_OVERLAPS Scan reads from #5 to #5 for low coordinate in verified region 633-1360 Test read # 5 ident 630313 633- 3658 against verified region 633- 1360 Failed to find appropriate intersecting read. createUnitigs()-- read 244465 place 13 edgeTo tig 113911 reads # 5 630313- 630313 verified 1360- 633 position 1360- -6604 covered 0- 703 NO_OVERLAPS Scan reads from #3 to #19 for low coordinate in verified region 13426-15428 Test read # 3 ident 595206 3276- 14596 against verified region 13426- 15428 Test read # 4 ident 233547 5546- 15428 against verified region 13426- 15428 Test read # 11 ident 581234 7964- 18062 against verified region 13426- 15428 Test read # 13 ident 233548 8308- 18094 against verified region 13426- 15428 Test read # 14 ident 717607 8516- 20301 against verified region 13426- 15428 Test read # 17 ident 384863 8752- 18871 against verified region 13426- 15428 Test read # 19 ident 553659 9441- 15188 against verified region 13426- 15428 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 0 edgeTo tig 133 reads # 3 595206- 553659 verified 13426- 15428 position 13426- 19811 covered 0- 1680 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 9364 place 1 edgeTo tig 133 reads # 11 581234- 686084 verified 16543- 21794 position 16543- 22908 covered 0- 5909 SELF EXPECTED_3' createUnitigs()-- read 9364 place 2 edgeTo tig 133 reads # 14 717607- 717607 verified 19430- 20301 position 19430- 25816 covered 0- 758 SELF EXPECTED_3' Scan reads from #2 to #8 for high coordinate in verified region 1802-4073 Test read # 2 ident 68071 1802- 9242 against verified region 1802- 4073 Test read # 5 ident 329187 2255- 7798 against verified region 1802- 4073 Test read # 6 ident 104762 3080- 8629 against verified region 1802- 4073 Test read # 7 ident 104761 3149- 9356 against verified region 1802- 4073 Test read # 8 ident 307583 3413- 7277 against verified region 1802- 4073 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 3 edgeTo tig 2620 reads # 2 68071- 307583 verified 4073- 1802 position 4073- -2285 covered 0- 1727 EXPECTED_3' NO_OVERLAPS Scan reads from #13 to #13 for high coordinate in verified region 4377-6170 Test read # 13 ident 329189 4377- 9769 against verified region 4377- 6170 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 4 edgeTo tig 2620 reads # 13 329189- 329189 verified 6170- 4377 position 6170- -198 covered 0- 1698 EXPECTED_3' NO_OVERLAPS Scan reads from #25 to #25 for high coordinate in verified region 5895-7569 Test read # 25 ident 457600 5895- 9652 against verified region 5895- 7569 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 5 edgeTo tig 2620 reads # 25 457600- 457600 verified 7569- 5895 position 7569- 1227 covered 0- 1605 EXPECTED_3' NO_OVERLAPS Scan reads from #49 to #83 for high coordinate in verified region 8449-10596 Test read # 49 ident 25729 8449- 14078 against verified region 8449- 10596 Test read # 53 ident 498981 8563- 14635 against verified region 8449- 10596 Test read # 56 ident 84862 8677- 14695 against verified region 8449- 10596 Test read # 65 ident 675833 8905- 11417 against verified region 8449- 10596 Test read # 67 ident 153449 8935- 10715 against verified region 8449- 10596 Test read # 68 ident 274475 8951- 12630 against verified region 8449- 10596 Test read # 69 ident 685049 8965- 10965 against verified region 8449- 10596 Test read # 70 ident 190282 9008- 16331 against verified region 8449- 10596 Test read # 71 ident 329192 9023- 12534 against verified region 8449- 10596 Test read # 72 ident 622500 9044- 10994 against verified region 8449- 10596 Test read # 83 ident 511194 9703- 14913 against verified region 8449- 10596 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 6 edgeTo tig 2620 reads # 49 25729- 511194 verified 10596- 8449 position 10596- 4207 covered 0- 1735 EXPECTED_3' NO_OVERLAPS Scan reads from #35 to #35 for high coordinate in verified region 12905-14385 Test read # 35 ident 504830 12905- 23784 against verified region 12905- 14385 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 7 edgeTo tig 3108 reads # 35 504830- 504830 verified 14385- 12905 position 14385- 7998 covered 0- 1366 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #0 for high coordinate in verified region 0-1785 Test read # 0 ident 92247 0- 11955 against verified region 0- 1785 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 8 edgeTo tig 4499 reads # 0 92247- 92247 verified 1785- 0 position 1785- -4565 covered 0- 1708 EXPECTED_3' NO_OVERLAPS Scan reads from #14 to #45 for high coordinate in verified region 3967-5637 Test read # 14 ident 648033 3967- 16316 against verified region 3967- 5637 Test read # 27 ident 443528 4603- 17248 against verified region 3967- 5637 Test read # 45 ident 134155 5183- 16855 against verified region 3967- 5637 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 9 edgeTo tig 4499 reads # 14 648033- 134155 verified 5637- 3967 position 5637- -751 covered 0- 1399 EXPECTED_3' NO_OVERLAPS Scan reads from #59 to #145 for high coordinate in verified region 6004-9393 Test read # 59 ident 632971 6004- 13149 against verified region 6004- 9393 Test read # 64 ident 510898 6154- 9830 against verified region 6004- 9393 Test read # 72 ident 80597 6618- 11946 against verified region 6004- 9393 Test read # 73 ident 648034 6689- 15091 against verified region 6004- 9393 Test read # 79 ident 546816 6907- 14291 against verified region 6004- 9393 Test read # 90 ident 20716 7329- 13221 against verified region 6004- 9393 Test read # 95 ident 20715 7473- 13390 against verified region 6004- 9393 Test read # 98 ident 267349 7741- 18616 against verified region 6004- 9393 Test read # 104 ident 160283 7915- 16955 against verified region 6004- 9393 Test read # 108 ident 519102 8208- 16034 against verified region 6004- 9393 Test read # 110 ident 430276 8266- 13695 against verified region 6004- 9393 Test read # 112 ident 536188 8272- 13390 against verified region 6004- 9393 Test read # 114 ident 578617 8312- 14685 against verified region 6004- 9393 Test read # 125 ident 535772 8650- 16014 against verified region 6004- 9393 Test read # 128 ident 606766 8763- 15842 against verified region 6004- 9393 Test read # 135 ident 631933 8993- 16289 against verified region 6004- 9393 Test read # 136 ident 468104 9053- 14775 against verified region 6004- 9393 Test read # 145 ident 393920 10063- 17880 against verified region 6004- 9393 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 10 edgeTo tig 4499 reads # 59 632971- 393920 verified 9393- 6004 position 9393- 3038 covered 0- 1735 EXPECTED_3' NO_OVERLAPS Scan reads from #2 to #113 for low coordinate in verified region 463-6300 Test read # 2 ident 495690 463- 8500 against verified region 463- 6300 Test read # 4 ident 495691 990- 9044 against verified region 463- 6300 - CANDIDATE hangs 4550 6246 - SAVED Test read # 5 ident 495692 1102- 8981 against verified region 463- 6300 - CANDIDATE hangs 4707 6233 Test read # 6 ident 412596 1491- 10662 against verified region 463- 6300 - CANDIDATE hangs 5347 8153 Test read # 7 ident 95362 1510- 10130 against verified region 463- 6300 - CANDIDATE hangs 3596 5815 Test read # 8 ident 170314 1566- 11153 against verified region 463- 6300 - CANDIDATE hangs 4974 8185 Test read # 9 ident 155245 1772- 9343 against verified region 463- 6300 - CANDIDATE hangs 5297 6518 Test read # 10 ident 75915 1850- 9138 against verified region 463- 6300 - CANDIDATE hangs 5207 6143 Test read # 11 ident 328354 2060- 10126 against verified region 463- 6300 - CANDIDATE hangs 4467 6172 Test read # 12 ident 429294 2106- 9446 against verified region 463- 6300 - CANDIDATE hangs 5356 6343 Test read # 13 ident 616747 2314- 8230 against verified region 463- 6300 - CANDIDATE hangs 4081 3640 Test read # 14 ident 468886 2383- 11888 against verified region 463- 6300 - CANDIDATE hangs 3625 6740 Test read # 15 ident 658278 2409- 8126 against verified region 463- 6300 - CANDIDATE hangs 4050 3415 Test read # 16 ident 231018 2471- 7082 against verified region 463- 6300 - CANDIDATE hangs 3716 1979 Test read # 18 ident 190042 2625- 13498 against verified region 463- 6300 - CANDIDATE hangs 3723 8213 Test read # 19 ident 236614 2731- 10554 against verified region 463- 6300 - CANDIDATE hangs 4421 5882 Test read # 20 ident 611161 2798- 9507 against verified region 463- 6300 - CANDIDATE hangs 4403 4752 Test read # 21 ident 620681 2832- 7847 against verified region 463- 6300 - CANDIDATE hangs 3627 2267 Test read # 22 ident 194357 2944- 9019 against verified region 463- 6300 - CANDIDATE hangs 4888 4619 Test read # 23 ident 170065 3057- 7601 against verified region 463- 6300 - CANDIDATE hangs 3645 1824 Test read # 24 ident 230747 3092- 10862 against verified region 463- 6300 - CANDIDATE hangs 4959 6364 Test read # 25 ident 180986 3102- 6303 against verified region 463- 6300 - CANDIDATE hangs 5052 1930 Test read # 26 ident 599359 3165- 9716 against verified region 463- 6300 - CANDIDATE hangs 4829 5022 Test read # 27 ident 75310 3244- 9614 against verified region 463- 6300 - CANDIDATE hangs 4405 4415 Test read # 28 ident 622657 3277- 12665 against verified region 463- 6300 - CANDIDATE hangs 5002 8011 Test read # 29 ident 468885 3277- 8782 against verified region 463- 6300 - CANDIDATE hangs 4022 3175 Test read # 30 ident 194358 3305- 9399 against verified region 463- 6300 - CANDIDATE hangs 4896 4614 Test read # 31 ident 348211 3423- 6249 against verified region 463- 6300 - CANDIDATE hangs 3635 115 Test read # 32 ident 75305 3446- 9699 against verified region 463- 6300 - CANDIDATE hangs 4612 4511 Test read # 34 ident 75306 3645- 10151 against verified region 463- 6300 - CANDIDATE hangs 4403 4570 Test read # 35 ident 75309 3764- 10263 against verified region 463- 6300 - CANDIDATE hangs 4396 4545 Test read # 36 ident 495693 3804- 9576 against verified region 463- 6300 - CANDIDATE hangs 4839 4260 Test read # 37 ident 479441 3821- 12010 against verified region 463- 6300 - CANDIDATE hangs 3747 5574 Test read # 38 ident 194354 3838- 8996 against verified region 463- 6300 - CANDIDATE hangs 4024 2833 Test read # 39 ident 495689 3861- 10466 against verified region 463- 6300 - CANDIDATE hangs 4198 4442 Test read # 40 ident 75308 3899- 10344 against verified region 463- 6300 - CANDIDATE hangs 4395 4482 Test read # 41 ident 468884 3943- 9345 against verified region 463- 6300 - CANDIDATE hangs 3604 2624 Test read # 42 ident 342308 4194- 10895 against verified region 463- 6300 - CANDIDATE hangs 5503 5851 Test read # 43 ident 194356 4301- 10342 against verified region 463- 6300 - CANDIDATE hangs 4947 4636 Test read # 44 ident 27915 4339- 13788 against verified region 463- 6300 - CANDIDATE hangs 3924 6998 Test read # 45 ident 431689 4358- 10482 against verified region 463- 6300 - CANDIDATE hangs 5267 5050 Test read # 46 ident 253383 4454- 10479 against verified region 463- 6300 - CANDIDATE hangs 4957 4628 Test read # 47 ident 8865 4482- 11439 against verified region 463- 6300 - CANDIDATE hangs 5375 5977 Test read # 48 ident 658277 4539- 9453 against verified region 463- 6300 - CANDIDATE hangs 4068 2640 Test read # 49 ident 638021 4611- 8246 against verified region 463- 6300 - CANDIDATE hangs 4371 1666 Test read # 50 ident 700307 4771- 10866 against verified region 463- 6300 - CANDIDATE hangs 3699 3421 Test read # 51 ident 253430 4849- 10972 against verified region 463- 6300 - CANDIDATE hangs 4593 4364 Test read # 53 ident 658275 4982- 8575 against verified region 463- 6300 - CANDIDATE hangs 4697 1947 Test read # 54 ident 275724 5031- 9502 against verified region 463- 6300 - CANDIDATE hangs 5370 3493 Test read # 57 ident 253384 5117- 7698 against verified region 463- 6300 - CANDIDATE hangs 4957 1207 Test read # 58 ident 699583 5142- 10836 against verified region 463- 6300 - CANDIDATE hangs 5427 4778 Test read # 59 ident 400400 5216- 11623 against verified region 463- 6300 - CANDIDATE hangs 5454 5510 Test read # 60 ident 580738 5221- 9392 against verified region 463- 6300 - CANDIDATE hangs 4538 2363 Test read # 62 ident 621500 5325- 8258 against verified region 463- 6300 - CANDIDATE hangs 4954 1552 Test read # 63 ident 671901 5330- 8350 against verified region 463- 6300 - CANDIDATE hangs 4877 1557 Test read # 64 ident 173398 5346- 9539 against verified region 463- 6300 - CANDIDATE hangs 4954 2808 Test read # 65 ident 455709 5427- 12663 against verified region 463- 6300 - CANDIDATE hangs 5384 6278 Test read # 67 ident 275725 5535- 9079 against verified region 463- 6300 - CANDIDATE hangs 5375 2594 Test read # 68 ident 615821 5554- 12906 against verified region 463- 6300 - CANDIDATE hangs 4268 5268 Test read # 71 ident 173397 5608- 10128 against verified region 463- 6300 - CANDIDATE hangs 4598 2786 Test read # 72 ident 107872 5740- 7442 against verified region 463- 6300 - CANDIDATE hangs 5355 741 Test read # 73 ident 459518 5767- 9279 against verified region 463- 6300 - CANDIDATE hangs 4977 2150 Test read # 84 ident 311321 6230- 13444 against verified region 463- 6300 - CANDIDATE hangs 4304 5171 Test read # 87 ident 615822 6352- 13414 against verified region 463- 6300 - CANDIDATE hangs 4259 4983 Test read # 92 ident 194359 6542- 9251 against verified region 463- 6300 - CANDIDATE hangs 4964 1364 Test read # 93 ident 540127 6599- 10190 against verified region 463- 6300 - CANDIDATE hangs 4391 1661 Test read # 94 ident 700308 6608- 9570 against verified region 463- 6300 - CANDIDATE hangs 3998 641 Test read # 97 ident 632206 6958- 13792 against verified region 463- 6300 - CANDIDATE hangs 5309 5827 Test read # 98 ident 82048 7465- 12349 against verified region 463- 6300 - CANDIDATE hangs 4805 3380 Test read # 99 ident 196097 7644- 13602 against verified region 463- 6300 - CANDIDATE hangs 4969 4616 Test read # 100 ident 196099 7659- 13583 against verified region 463- 6300 - CANDIDATE hangs 4969 4590 Test read # 101 ident 196098 7702- 13607 against verified region 463- 6300 - CANDIDATE hangs 4968 4566 Test read # 102 ident 196101 7727- 13696 against verified region 463- 6300 - CANDIDATE hangs 4969 4628 Test read # 103 ident 82049 7748- 12520 against verified region 463- 6300 - CANDIDATE hangs 4921 3391 Test read # 104 ident 196100 7783- 13695 against verified region 463- 6300 - CANDIDATE hangs 5023 4627 Test read # 105 ident 124218 7807- 10010 against verified region 463- 6300 - CANDIDATE hangs 5372 1291 Test read # 106 ident 601474 7937- 13614 against verified region 463- 6300 - CANDIDATE hangs 5345 4720 Test read # 107 ident 632472 7987- 10758 against verified region 463- 6300 - CANDIDATE hangs 5400 1892 Test read # 108 ident 601472 8014- 13699 against verified region 463- 6300 - CANDIDATE hangs 5344 4738 Test read # 109 ident 601471 8068- 13704 against verified region 463- 6300 - CANDIDATE hangs 5395 4732 Test read # 110 ident 601476 8099- 13768 against verified region 463- 6300 - CANDIDATE hangs 5344 4717 Test read # 111 ident 601473 8101- 13759 against verified region 463- 6300 - CANDIDATE hangs 5378 4743 Test read # 112 ident 601475 8108- 13774 against verified region 463- 6300 - CANDIDATE hangs 5355 4725 Test read # 113 ident 86819 8116- 11784 against verified region 463- 6300 - CANDIDATE hangs 5353 2726 Found appropriate intersecting read. createUnitigs()-- read 9364 place 11 edgeTo tig 113055 reads # 2 495690- 86819 verified 463- 6300 position -40- 6300 covered 3596- 6273 BREAK at pos 990 read 495691 isLow 1 sim 1.0000 Scan reads from #24 to #24 for low coordinate in verified region 5718-7659 Test read # 24 ident 172244 3819- 7659 against verified region 5718- 7659 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 12 edgeTo tig 113109 reads # 24 172244- 172244 verified 5718- 7659 position 5718- 12062 covered 0- 1870 EXPECTED_3' NO_OVERLAPS Scan reads from #77 to #77 for low coordinate in verified region 8429-10132 Test read # 77 ident 9360 8427- 10132 against verified region 8429- 10132 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 13 edgeTo tig 113109 reads # 77 9360- 9360 verified 8429- 10132 position 8429- 14767 covered 0- 1638 EXPECTED_3' NO_OVERLAPS Scan reads from #22 to #22 for low coordinate in verified region 10700-12042 Test read # 22 ident 452821 3740- 12042 against verified region 10700- 12042 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 14 edgeTo tig 113109 reads # 22 452821- 452821 verified 10700- 12042 position 10700- 17134 covered 0- 1181 EXPECTED_3' NO_OVERLAPS Scan reads from #53 to #53 for low coordinate in verified region 11700-13375 Test read # 53 ident 544396 6054- 13375 against verified region 11700- 13375 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 15 edgeTo tig 113109 reads # 53 544396- 544396 verified 11700- 13375 position 11700- 18124 covered 0- 1524 EXPECTED_3' NO_OVERLAPS Scan reads from #35 to #35 for low coordinate in verified region 12690-13665 Test read # 35 ident 113252 4734- 13665 against verified region 12690- 13665 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 16 edgeTo tig 113109 reads # 35 113252- 113252 verified 12690- 13665 position 12690- 19110 covered 0- 828 EXPECTED_3' NO_OVERLAPS Scan reads from #87 to #91 for low coordinate in verified region 17728-18288 Test read # 87 ident 422794 12325- 18288 against verified region 17728- 18288 Test read # 89 ident 422792 12333- 18274 against verified region 17728- 18288 Test read # 91 ident 422790 12372- 18282 against verified region 17728- 18288 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 17 edgeTo tig 113159 reads # 87 422794- 422790 verified 17728- 18288 position 17728- 24042 covered 0- 516 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #8 for low coordinate in verified region 6304-8355 Test read # 3 ident 499953 914- 8355 against verified region 6304- 8355 Test read # 4 ident 544607 938- 10115 against verified region 6304- 8355 Test read # 5 ident 347973 1153- 8144 against verified region 6304- 8355 Test read # 6 ident 93171 1576- 11068 against verified region 6304- 8355 Test read # 7 ident 636348 1649- 7482 against verified region 6304- 8355 Test read # 8 ident 470782 1783- 7312 against verified region 6304- 8355 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 18 edgeTo tig 113201 reads # 3 499953- 470782 verified 6304- 8355 position 6304- 12663 covered 0- 1630 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #76 for low coordinate in verified region 9561-13339 Test read # 0 ident 160284 0- 13078 against verified region 9561- 13339 Test read # 2 ident 161947 453- 13295 against verified region 9561- 13339 Test read # 3 ident 499953 914- 8355 against verified region 9561- 13339 Test read # 4 ident 544607 938- 10115 against verified region 9561- 13339 Test read # 5 ident 347973 1153- 8144 against verified region 9561- 13339 Test read # 6 ident 93171 1576- 11068 against verified region 9561- 13339 Test read # 7 ident 636348 1649- 7482 against verified region 9561- 13339 Test read # 8 ident 470782 1783- 7312 against verified region 9561- 13339 Test read # 9 ident 248563 2343- 9781 against verified region 9561- 13339 Test read # 12 ident 219841 2641- 9633 against verified region 9561- 13339 Test read # 15 ident 659353 3481- 9947 against verified region 9561- 13339 Test read # 17 ident 661742 3676- 11944 against verified region 9561- 13339 Test read # 18 ident 659352 3830- 10279 against verified region 9561- 13339 Test read # 19 ident 104362 3878- 11138 against verified region 9561- 13339 Test read # 20 ident 659349 3902- 10372 against verified region 9561- 13339 Test read # 21 ident 659354 3965- 10426 against verified region 9561- 13339 Test read # 23 ident 659348 4036- 10499 against verified region 9561- 13339 Test read # 26 ident 714418 4181- 9042 against verified region 9561- 13339 Test read # 27 ident 197903 4305- 10822 against verified region 9561- 13339 Test read # 28 ident 659350 4374- 10823 against verified region 9561- 13339 Test read # 32 ident 705958 4657- 14799 against verified region 9561- 13339 Test read # 37 ident 385262 4922- 11365 against verified region 9561- 13339 Test read # 38 ident 197902 4977- 11589 against verified region 9561- 13339 Test read # 45 ident 68072 5743- 9359 against verified region 9561- 13339 Test read # 47 ident 598246 5766- 10239 against verified region 9561- 13339 Test read # 50 ident 82822 5975- 12478 against verified region 9561- 13339 Test read # 55 ident 357888 6485- 12025 against verified region 9561- 13339 Test read # 65 ident 553658 7045- 16052 against verified region 9561- 13339 Test read # 69 ident 20717 7390- 13339 against verified region 9561- 13339 Test read # 76 ident 298986 7796- 11360 against verified region 9561- 13339 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 19 edgeTo tig 113201 reads # 0 160284- 298986 verified 9561- 13339 position 9561- 15929 covered 0- 1707 EXPECTED_3' NO_OVERLAPS Scan reads from #32 to #32 for low coordinate in verified region 13402-14799 Test read # 32 ident 705958 4657- 14799 against verified region 13402- 14799 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 20 edgeTo tig 113201 reads # 32 705958- 705958 verified 13402- 14799 position 13402- 19775 covered 0- 1297 EXPECTED_3' NO_OVERLAPS Scan reads from #65 to #65 for low coordinate in verified region 14461-16052 Test read # 65 ident 553658 7045- 16052 against verified region 14461- 16052 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 21 edgeTo tig 113201 reads # 65 553658- 553658 verified 14461- 16052 position 14461- 20801 covered 0- 1524 EXPECTED_3' NO_OVERLAPS Scan reads from #1 to #35 for low coordinate in verified region 8453-10968 Test read # 1 ident 682535 1159- 9537 against verified region 8453- 10968 Test read # 3 ident 682534 1362- 9748 against verified region 8453- 10968 Test read # 4 ident 682536 1478- 9844 against verified region 8453- 10968 Test read # 19 ident 178761 3470- 10968 against verified region 8453- 10968 Test read # 35 ident 682537 5266- 9331 against verified region 8453- 10968 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 22 edgeTo tig 113218 reads # 1 682535- 682537 verified 8453- 10968 position 8453- 14823 covered 0- 1532 EXPECTED_3' NO_OVERLAPS Scan reads from #44 to #44 for low coordinate in verified region 10722-11436 Test read # 44 ident 564927 6557- 11436 against verified region 10722- 11436 Failed to find appropriate intersecting read. createUnitigs()-- read 9364 place 23 edgeTo tig 113218 reads # 44 564927- 564927 verified 10722- 11436 position 10722- 17043 covered 0- 666 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 134 len 40559 first read 196737 with 1 placements - last read 19922 with 1 placements createUnitigs()-- read 196737 place 0 edgeTo tig 134 reads # 1 567529- 159699 verified 9937- 751 position 9937- 22 covered 0- 9162 SELF EXPECTED_3' createUnitigs()-- read 19922 place 0 edgeTo tig 134 reads # 94 371814- 355843 verified 34044- 40552 position 34044- 40556 covered 0- 6486 SELF createUnitigs()-- tig 135 len 24212 first read 26382 with 1 placements - last read 596276 with 1 placements createUnitigs()-- read 26382 place 0 edgeTo tig 135 reads # 1 26385- 344371 verified 7152- 13 position 7152- 2 covered 0- 7101 SELF createUnitigs()-- read 596276 place 0 edgeTo tig 135 reads # 43 358224- 717027 verified 17869- 20738 position 17869- 24204 covered 0- 2865 SELF EXPECTED_3' createUnitigs()-- tig 139 len 32591 first read 273676 with 5 placements - last read 88069 with 3 placements createUnitigs()-- read 273676 place 0 edgeTo tig 139 reads # 1 347312- 259945 verified 233- 17240 position 36- 17240 covered 257- 17183 SELF EXPECTED_5' Scan reads from #25 to #38 for high coordinate in verified region 27212-32591 Test read # 25 ident 672910 21094- 28283 against verified region 27212- 32591 - CANDIDATE hangs -6083 -16158 - SAVED Test read # 27 ident 155250 23778- 29293 against verified region 27212- 32591 - CANDIDATE hangs -3423 -15141 - SAVED Test read # 28 ident 589921 23937- 32100 against verified region 27212- 32591 - CANDIDATE hangs -3257 -12339 - SAVED Test read # 29 ident 88069 24035- 32591 against verified region 27212- 32591 Test read # 31 ident 332720 24349- 30873 against verified region 27212- 32591 - CANDIDATE hangs -2856 -13550 Test read # 33 ident 155249 24649- 29331 against verified region 27212- 32591 - CANDIDATE hangs -2566 -15115 Test read # 34 ident 347311 25058- 29338 against verified region 27212- 32591 - CANDIDATE hangs -2182 -15133 Test read # 35 ident 347313 25320- 28108 against verified region 27212- 32591 - CANDIDATE hangs -1912 -16336 Test read # 36 ident 672911 25615- 28310 against verified region 27212- 32591 - CANDIDATE hangs -1609 -16129 Test read # 37 ident 391996 25805- 31979 against verified region 27212- 32591 - CANDIDATE hangs -1410 -12432 Test read # 38 ident 412413 25890- 31369 against verified region 27212- 32591 - CANDIDATE hangs -1331 -13041 Found appropriate intersecting read. createUnitigs()-- read 273676 place 1 edgeTo tig 139 reads # 25 672910- 412413 verified 27212- 32591 position 27212- 44437 covered 0- 5320 BREAK at pos 32100 read 589921 isLow 0 sim 0.8862 Scan reads from #22 to #22 for high coordinate in verified region 9409-12254 Test read # 22 ident 520835 9409- 12254 against verified region 9409- 12254 Failed to find appropriate intersecting read. createUnitigs()-- read 273676 place 2 edgeTo tig 1278 reads # 22 520835- 520835 verified 9409- 12254 position 7236- 24481 covered 2173- 4956 EXPECTED_5' NO_OVERLAPS Scan reads from #12 to #22 for high coordinate in verified region 3122-4363 Test read # 12 ident 395558 3122- 4311 against verified region 3122- 4363 - CANDIDATE hangs 8005 -7990 Test read # 22 ident 567869 3346- 4363 against verified region 3122- 4363 Failed to find appropriate intersecting read. createUnitigs()-- read 273676 place 3 edgeTo tig 14078 reads # 12 395558- 567869 verified 3122- 4363 position -4884- 12302 covered 8005- 9243 EXPECTED_5' NO_OVERLAPS Scan reads from #7 to #7 for high coordinate in verified region 2552-3563 Test read # 7 ident 458168 2552- 3563 against verified region 2552- 3563 Failed to find appropriate intersecting read. createUnitigs()-- read 273676 place 4 edgeTo tig 21764 reads # 7 458168- 458168 verified 2552- 3563 position -12891- 4300 covered 15443- 16446 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #0 to #8 for low coordinate in verified region 0-5343 Test read # 0 ident 273676 0- 17266 against verified region 0- 5343 Test read # 1 ident 347312 233- 6533 against verified region 0- 5343 - CANDIDATE hangs 3435 1193 - SAVED Test read # 2 ident 575287 393- 6655 against verified region 0- 5343 - CANDIDATE hangs 3584 1326 Test read # 3 ident 575288 408- 5670 against verified region 0- 5343 - CANDIDATE hangs 3587 342 Test read # 4 ident 153612 1182- 6724 against verified region 0- 5343 - CANDIDATE hangs 4345 1392 Test read # 5 ident 328592 2352- 5264 against verified region 0- 5343 - CANDIDATE hangs 5532 -60 Test read # 6 ident 289823 2737- 9367 against verified region 0- 5343 - CANDIDATE hangs 5916 4006 Test read # 7 ident 691067 3359- 9404 against verified region 0- 5343 - CANDIDATE hangs 6549 4051 Test read # 8 ident 1546 4755- 9148 against verified region 0- 5343 - CANDIDATE hangs 7955 3824 Found appropriate intersecting read. createUnitigs()-- read 88069 place 0 edgeTo tig 139 reads # 0 273676- 1546 verified 0- 5343 position -3184- 5343 covered 3175- 8508 BREAK at pos 233 read 347312 isLow 1 sim 0.9264 createUnitigs()-- read 88069 place 1 edgeTo tig 139 reads # 20 571073- 412413 verified 24039- 32100 position 24039- 32576 covered 0- 8031 SELF EXPECTED_3' Scan reads from #22 to #22 for low coordinate in verified region 9409-12254 Test read # 22 ident 520835 9409- 12254 against verified region 9409- 12254 Failed to find appropriate intersecting read. createUnitigs()-- read 88069 place 2 edgeTo tig 1278 reads # 22 520835- 520835 verified 9409- 12254 position 4059- 12616 covered 5350- 8146 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 145 len 39178 first read 117249 with 1 placements - last read 272022 with 1 placements createUnitigs()-- read 117249 place 0 edgeTo tig 145 reads # 1 206404- 582276 verified 6338- 4 position 6338- 4 covered 0- 6311 SELF createUnitigs()-- read 272022 place 0 edgeTo tig 145 reads # 45 272021- 272021 verified 39176- 34049 position 39176- 34049 covered 0- 5083 SELF createUnitigs()-- tig 147 len 31044 first read 571537 with 1 placements - last read 148970 with 1 placements createUnitigs()-- read 571537 place 0 edgeTo tig 147 reads # 1 597976- 286506 verified 5165- 127 position 5165- 2 covered 0- 5008 SELF EXPECTED_3' createUnitigs()-- read 148970 place 0 edgeTo tig 147 reads # 49 326745- 159491 verified 25082- 30946 position 25082- 31039 covered 0- 5816 SELF EXPECTED_3' createUnitigs()-- tig 150 len 29200 first read 658346 with 3 placements - last read 343982 with 2 placements createUnitigs()-- read 658346 place 0 edgeTo tig 150 reads # 1 177869- 662867 verified 1161- 13154 position 38- 13154 covered 0- 13075 SELF Scan reads from #175 to #175 for high coordinate in verified region 26315-28938 Test read # 175 ident 385860 26315- 28938 against verified region 26315- 28938 Failed to find appropriate intersecting read. createUnitigs()-- read 658346 place 1 edgeTo tig 150 reads # 175 385860- 385860 verified 26315- 28938 position 19804- 32907 covered 6511- 9106 EXPECTED_5' NO_OVERLAPS Scan reads from #121 to #174 for high coordinate in verified region 23694-29200 Test read # 121 ident 422208 15838- 24828 against verified region 23694- 29200 - CANDIDATE hangs -8198 -12302 - SAVED Test read # 122 ident 206372 15860- 24667 against verified region 23694- 29200 - CANDIDATE hangs -8172 -12473 Test read # 131 ident 343982 17953- 29200 against verified region 23694- 29200 Test read # 134 ident 226818 18450- 28728 against verified region 23694- 29200 - CANDIDATE hangs -5293 -8133 - SAVED Test read # 135 ident 68746 18465- 26151 against verified region 23694- 29200 - CANDIDATE hangs -5552 -10960 Test read # 143 ident 126119 20578- 26821 against verified region 23694- 29200 - CANDIDATE hangs -3009 -9872 Test read # 144 ident 126118 20602- 26789 against verified region 23694- 29200 - CANDIDATE hangs -2990 -9920 Test read # 146 ident 160320 20859- 26610 against verified region 23694- 29200 - CANDIDATE hangs -2684 -10036 Test read # 147 ident 133520 20909- 28246 against verified region 23694- 29200 - CANDIDATE hangs -2654 -8429 Test read # 148 ident 355065 20934- 25493 against verified region 23694- 29200 - CANDIDATE hangs -3039 -11576 Test read # 149 ident 126117 20954- 27212 against verified region 23694- 29200 - CANDIDATE hangs -3014 -9871 Test read # 150 ident 192514 20959- 28173 against verified region 23694- 29200 - CANDIDATE hangs -2604 -8498 Test read # 151 ident 427038 20964- 27502 against verified region 23694- 29200 - CANDIDATE hangs -3006 -9582 Test read # 154 ident 160319 21224- 25787 against verified region 23694- 29200 - CANDIDATE hangs -2731 -11281 Test read # 155 ident 160322 21266- 25824 against verified region 23694- 29200 - CANDIDATE hangs -2681 -11210 Test read # 158 ident 174930 21449- 28780 against verified region 23694- 29200 - CANDIDATE hangs -2499 -8293 - SAVED Test read # 159 ident 175034 21546- 29193 against verified region 23694- 29200 - CANDIDATE hangs -2419 -7815 - SAVED Test read # 162 ident 154909 21995- 29000 against verified region 23694- 29200 - CANDIDATE hangs -1935 -8031 Test read # 165 ident 355064 22161- 25450 against verified region 23694- 29200 - CANDIDATE hangs -1780 -11584 Test read # 168 ident 411963 22463- 25577 against verified region 23694- 29200 - CANDIDATE hangs -1478 -11449 Test read # 169 ident 79454 22958- 27804 against verified region 23694- 29200 - CANDIDATE hangs -970 -9210 Test read # 172 ident 126116 24731- 26896 against verified region 23694- 29200 - CANDIDATE hangs 864 -10068 Test read # 173 ident 701210 25379- 27634 against verified region 23694- 29200 - CANDIDATE hangs 3568 -7269 Test read # 174 ident 169642 26280- 27682 against verified region 23694- 29200 - CANDIDATE hangs 4451 -7250 Found appropriate intersecting read. createUnitigs()-- read 658346 place 2 edgeTo tig 150 reads # 121 422208- 169642 verified 23694- 29200 position 23694- 36795 covered 0- 5825 BREAK at pos 29193 read 175034 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #0 to #83 for low coordinate in verified region 0-8074 Test read # 0 ident 658346 0- 13166 against verified region 0- 8074 Test read # 1 ident 177869 1120- 5963 against verified region 0- 8074 - CANDIDATE hangs 5404 -935 Test read # 2 ident 338870 1161- 8309 against verified region 0- 8074 - CANDIDATE hangs 6216 2124 - SAVED Test read # 3 ident 426174 1285- 7326 against verified region 0- 8074 - CANDIDATE hangs 5300 165 Test read # 4 ident 625079 1431- 10603 against verified region 0- 8074 - CANDIDATE hangs 5851 3797 Test read # 5 ident 277881 1536- 12309 against verified region 0- 8074 - CANDIDATE hangs 7739 7282 Test read # 6 ident 277882 1708- 12551 against verified region 0- 8074 - CANDIDATE hangs 7673 7275 Test read # 7 ident 462502 1825- 8706 against verified region 0- 8074 - CANDIDATE hangs 6595 2282 Test read # 8 ident 722772 2014- 10004 against verified region 0- 8074 - CANDIDATE hangs 6599 3372 Test read # 9 ident 254095 2119- 10259 against verified region 0- 8074 - CANDIDATE hangs 8894 5815 Test read # 10 ident 179786 2209- 9541 against verified region 0- 8074 - CANDIDATE hangs 8122 4247 Test read # 11 ident 336101 2216- 10633 against verified region 0- 8074 - CANDIDATE hangs 8576 5772 Test read # 12 ident 179788 2337- 9542 against verified region 0- 8074 - CANDIDATE hangs 8191 4194 Test read # 13 ident 722773 2375- 9896 against verified region 0- 8074 - CANDIDATE hangs 6981 3287 Test read # 14 ident 343983 2519- 6756 against verified region 0- 8074 - CANDIDATE hangs 6932 9 Test read # 15 ident 720493 2902- 9602 against verified region 0- 8074 - CANDIDATE hangs 8485 3970 Test read # 16 ident 247244 2934- 8355 against verified region 0- 8074 - CANDIDATE hangs 7383 1600 Test read # 17 ident 179789 3195- 10560 against verified region 0- 8074 - CANDIDATE hangs 8140 4279 Test read # 18 ident 660392 3195- 9721 against verified region 0- 8074 - CANDIDATE hangs 9397 4704 Test read # 19 ident 20804 3314- 8934 against verified region 0- 8074 - CANDIDATE hangs 7547 1963 Test read # 20 ident 539908 3373- 8376 against verified region 0- 8074 - CANDIDATE hangs 7694 1509 Test read # 21 ident 679364 3387- 8280 against verified region 0- 8074 - CANDIDATE hangs 7173 873 Test read # 22 ident 457483 3438- 9037 against verified region 0- 8074 - CANDIDATE hangs 8034 2410 Test read # 23 ident 677772 3670- 9217 against verified region 0- 8074 - CANDIDATE hangs 8199 2535 Test read # 24 ident 336099 3736- 7301 against verified region 0- 8074 - CANDIDATE hangs 8485 874 Test read # 25 ident 457482 3860- 9137 against verified region 0- 8074 - CANDIDATE hangs 8037 2107 Test read # 26 ident 652770 3945- 10949 against verified region 0- 8074 - CANDIDATE hangs 7846 3627 Test read # 27 ident 338869 4096- 9030 against verified region 0- 8074 - CANDIDATE hangs 8525 2249 Test read # 28 ident 457480 4151- 9823 against verified region 0- 8074 - CANDIDATE hangs 8008 2469 Test read # 29 ident 677771 4158- 12888 against verified region 0- 8074 - CANDIDATE hangs 8210 5688 Test read # 30 ident 719800 4307- 10507 against verified region 0- 8074 - CANDIDATE hangs 8387 3374 Test read # 31 ident 457485 4354- 9949 against verified region 0- 8074 - CANDIDATE hangs 8045 2430 Test read # 32 ident 457484 4398- 10064 against verified region 0- 8074 - CANDIDATE hangs 8029 2480 Test read # 33 ident 426772 4467- 11613 against verified region 0- 8074 - CANDIDATE hangs 8481 4424 Test read # 34 ident 133521 4507- 7459 against verified region 0- 8074 - CANDIDATE hangs 7489 -731 Test read # 35 ident 628327 4739- 8052 against verified region 0- 8074 - CANDIDATE hangs 9049 1169 Test read # 36 ident 693455 4781- 12439 against verified region 0- 8074 - CANDIDATE hangs 8960 5372 Test read # 37 ident 21330 4806- 8325 against verified region 0- 8074 - CANDIDATE hangs 8672 996 Test read # 38 ident 426773 4825- 22565 against verified region 0- 8074 - CANDIDATE hangs -13951 -7512 Test read # 39 ident 277880 4837- 12254 against verified region 0- 8074 - CANDIDATE hangs 9174 5346 Test read # 40 ident 143014 5067- 12084 against verified region 0- 8074 - CANDIDATE hangs 8976 4745 Test read # 41 ident 502308 5122- 11516 against verified region 0- 8074 - CANDIDATE hangs 7646 2822 Test read # 42 ident 502311 5142- 11525 against verified region 0- 8074 - CANDIDATE hangs 7670 2826 Test read # 43 ident 502306 5143- 11564 against verified region 0- 8074 - CANDIDATE hangs 7624 2820 Test read # 44 ident 457481 5178- 9795 against verified region 0- 8074 - CANDIDATE hangs 8018 1433 Test read # 45 ident 502309 5238- 11567 against verified region 0- 8074 - CANDIDATE hangs 7721 2832 Test read # 46 ident 502307 5268- 11666 against verified region 0- 8074 - CANDIDATE hangs 7641 2815 Test read # 47 ident 502312 5308- 11381 against verified region 0- 8074 - CANDIDATE hangs 7799 2650 Test read # 48 ident 295933 5392- 8207 against verified region 0- 8074 - CANDIDATE hangs 8702 313 Test read # 49 ident 155970 5413- 12874 against verified region 0- 8074 - CANDIDATE hangs 9662 5881 Test read # 50 ident 635403 5447- 15072 against verified region 0- 8074 - CANDIDATE hangs 7718 6082 Test read # 51 ident 502310 5464- 11820 against verified region 0- 8074 - CANDIDATE hangs 7695 2826 Test read # 52 ident 608313 5581- 19135 against verified region 0- 8074 - CANDIDATE hangs -12416 -10140 Test read # 53 ident 539004 5607- 9611 against verified region 0- 8074 - CANDIDATE hangs 7083 -139 Test read # 54 ident 468669 5839- 17769 against verified region 0- 8074 - CANDIDATE hangs 8296 8967 Test read # 55 ident 579166 5922- 9343 against verified region 0- 8074 - CANDIDATE hangs 9438 1650 Test read # 56 ident 326490 5956- 8729 against verified region 0- 8074 - CANDIDATE hangs 9515 1090 Test read # 57 ident 455676 6601- 10937 against verified region 0- 8074 - CANDIDATE hangs 9060 2182 Test read # 58 ident 539367 7128- 8274 against verified region 0- 8074 - CANDIDATE hangs 8684 -1386 Test read # 59 ident 301434 7460- 17486 against verified region 0- 8074 - CANDIDATE hangs 9862 8637 Test read # 60 ident 548241 7714- 16798 against verified region 0- 8074 - CANDIDATE hangs 10108 7948 Test read # 61 ident 147777 7760- 15891 against verified region 0- 8074 - CANDIDATE hangs 10182 7068 Test read # 62 ident 227439 7902- 12207 against verified region 0- 8074 - CANDIDATE hangs 10310 3404 Test read # 63 ident 438231 7922- 12928 against verified region 0- 8074 - CANDIDATE hangs 10310 4080 Test read # 64 ident 552378 7939- 12787 against verified region 0- 8074 - CANDIDATE hangs 10332 3967 Test read # 65 ident 662864 8308- 14697 against verified region 0- 8074 - CANDIDATE hangs 8674 3850 Test read # 66 ident 662866 8308- 14697 against verified region 0- 8074 - CANDIDATE hangs 8695 3861 Test read # 67 ident 662863 8343- 14703 against verified region 0- 8074 - CANDIDATE hangs 8693 3840 Test read # 68 ident 662865 8382- 14705 against verified region 0- 8074 - CANDIDATE hangs 8735 3848 Test read # 69 ident 579938 8581- 20473 against verified region 0- 8074 - CANDIDATE hangs -9410 -8752 Test read # 70 ident 658347 8862- 12812 against verified region 0- 8074 - CANDIDATE hangs 9225 1983 Test read # 71 ident 687419 9158- 13246 against verified region 0- 8074 - CANDIDATE hangs 9508 2385 Test read # 72 ident 7239 9164- 12095 against verified region 0- 8074 - CANDIDATE hangs 9519 1269 Test read # 73 ident 457016 9376- 16132 against verified region 0- 8074 - CANDIDATE hangs 9730 5266 Test read # 74 ident 457013 9385- 16124 against verified region 0- 8074 - CANDIDATE hangs 9738 5261 Test read # 75 ident 457017 9386- 16119 against verified region 0- 8074 - CANDIDATE hangs 9738 5252 Test read # 76 ident 457015 9388- 16118 against verified region 0- 8074 - CANDIDATE hangs 9740 5248 Test read # 77 ident 457014 9395- 16072 against verified region 0- 8074 - CANDIDATE hangs 9746 5204 Test read # 78 ident 457018 9402- 11944 against verified region 0- 8074 - CANDIDATE hangs 9739 1111 Test read # 79 ident 457012 9407- 16120 against verified region 0- 8074 - CANDIDATE hangs 9756 5247 Test read # 80 ident 351401 9484- 14582 against verified region 0- 8074 - CANDIDATE hangs 9831 3715 Test read # 82 ident 667066 9854- 16743 against verified region 0- 8074 - CANDIDATE hangs 10195 5866 Test read # 83 ident 334181 9870- 16415 against verified region 0- 8074 - CANDIDATE hangs 10203 5529 Found appropriate intersecting read. createUnitigs()-- read 343982 place 0 edgeTo tig 150 reads # 0 658346- 334181 verified 0- 8074 position -3141- 8074 covered 5300- 11164 BREAK at pos 1161 read 338870 isLow 1 sim 0.8562 createUnitigs()-- read 343982 place 1 edgeTo tig 150 reads # 38 426773- 385860 verified 17957- 29068 position 17933- 29135 covered 0- 11164 SELF createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 152 len 37858 first read 224618 with 1 placements - last read 27405 with 1 placements createUnitigs()-- read 224618 place 0 edgeTo tig 152 reads # 1 488750- 659751 verified 14- 3800 position 14- 3800 covered 0- 3802 SELF createUnitigs()-- read 27405 place 0 edgeTo tig 152 reads # 38 453617- 27406 verified 37830- 30002 position 37864- 30002 covered 40- 7777 SELF EXPECTED_5' createUnitigs()-- tig 153 len 26718 first read 244437 with 2 placements - last read 494296 with 1 placements createUnitigs()-- read 244437 place 0 edgeTo tig 153 reads # 1 244436- 244436 verified 46- 6425 position 0- 6425 covered 46- 6303 SELF EXPECTED_5' Scan reads from #15 to #27 for high coordinate in verified region 7791-9464 Test read # 15 ident 126288 7052- 9376 against verified region 7791- 9464 - CANDIDATE hangs -736 -4795 - SAVED Test read # 21 ident 590133 7058- 9464 against verified region 7791- 9464 Test read # 27 ident 69890 7070- 9452 against verified region 7791- 9464 - CANDIDATE hangs -722 -4720 - SAVED Found appropriate intersecting read. createUnitigs()-- read 244437 place 1 edgeTo tig 8430 reads # 15 126288- 69890 verified 7791- 9464 position 7791- 14172 covered 0- 1594 BREAK at pos 9452 read 69890 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 494296 place 0 edgeTo tig 153 reads # 28 375507- 403242 verified 26455- 23612 position 26721- 23612 covered 285- 3058 SELF EXPECTED_5' createUnitigs()-- tig 158 len 50425 first read 316188 with 2 placements - last read 97073 with 1 placements createUnitigs()-- read 316188 place 0 edgeTo tig 158 reads # 1 316189- 546587 verified 45- 4922 position 6- 4922 covered 27- 4904 SELF EXPECTED_5' Scan reads from #0 to #0 for high coordinate in verified region 0-2123 Test read # 0 ident 636341 0- 9202 against verified region 0- 2123 Failed to find appropriate intersecting read. createUnitigs()-- read 316188 place 1 edgeTo tig 5181 reads # 0 636341- 636341 verified 0- 2123 position -2794- 2123 covered 2794- 4904 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 97073 place 0 edgeTo tig 158 reads # 73 617961- 617962 verified 42191- 50338 position 42191- 50417 covered 0- 8162 SELF EXPECTED_3' createUnitigs()-- tig 159 len 12973 first read 711442 with 1 placements - last read 114484 with 2 placements createUnitigs()-- read 711442 place 0 edgeTo tig 159 reads # 1 351343- 133739 verified 9- 2704 position 3- 2704 covered 0- 2686 SELF createUnitigs()-- read 114484 place 0 edgeTo tig 159 reads # 8 304232- 186211 verified 12973- 6797 position 12974- 6797 covered 0- 6157 SELF Scan reads from #12 to #20 for low coordinate in verified region 15444-19570 Test read # 12 ident 466142 15444- 19674 against verified region 15444- 19570 Test read # 13 ident 477906 16520- 23775 against verified region 15444- 19570 - CANDIDATE hangs -4193 -3170 - SAVED Test read # 14 ident 477908 16527- 23778 against verified region 15444- 19570 - CANDIDATE hangs -4197 -3175 Test read # 15 ident 477907 16528- 23777 against verified region 15444- 19570 - CANDIDATE hangs -4202 -3173 Test read # 16 ident 477904 16531- 23770 against verified region 15444- 19570 - CANDIDATE hangs -4195 -3170 Test read # 17 ident 477909 16558- 23776 against verified region 15444- 19570 - CANDIDATE hangs -4200 -3193 Test read # 18 ident 477905 16559- 23782 against verified region 15444- 19570 - CANDIDATE hangs -4216 -3205 Test read # 19 ident 216927 17154- 23425 against verified region 15444- 19570 - CANDIDATE hangs -3842 -3802 Test read # 20 ident 477910 17516- 23773 against verified region 15444- 19570 - CANDIDATE hangs -4201 -4153 Found appropriate intersecting read. createUnitigs()-- read 114484 place 1 edgeTo tig 113094 reads # 12 466142- 477910 verified 19570- 15444 position 19570- 13357 covered 0- 4074 BREAK at pos 16520 read 477906 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 160 len 17993 first read 353884 with 1 placements - last read 720932 with 1 placements createUnitigs()-- read 353884 place 0 edgeTo tig 160 reads # 1 353881- 103846 verified 18- 6417 position 11- 6417 covered 10- 6366 SELF EXPECTED_5' createUnitigs()-- read 720932 place 0 edgeTo tig 160 reads # 58 709002- 6721 verified 17966- 14615 position 17997- 14615 covered 22- 3360 SELF EXPECTED_5' createUnitigs()-- tig 168 len 43739 first read 611130 with 1 placements - last read 411965 with 1 placements createUnitigs()-- read 611130 place 0 edgeTo tig 168 reads # 1 45158- 671579 verified 14963- 3848 position 14963- 3 covered 0- 11101 SELF EXPECTED_3' createUnitigs()-- read 411965 place 0 edgeTo tig 168 reads # 44 526961- 526962 verified 38752- 43705 position 38752- 43740 covered 0- 4932 SELF EXPECTED_3' createUnitigs()-- tig 177 len 44851 first read 671423 with 1 placements - last read 638938 with 3 placements createUnitigs()-- read 671423 place 0 edgeTo tig 177 reads # 1 505082- 706801 verified 8832- 8 position 8832- 6 covered 0- 8817 SELF Scan reads from #57 to #57 for low coordinate in verified region 25361-25992 Test read # 57 ident 60810 25361- 29679 against verified region 25361- 25992 Failed to find appropriate intersecting read. createUnitigs()-- read 638938 place 0 edgeTo tig 5 reads # 57 60810- 60810 verified 25361- 25992 position 18220- 25992 covered 7141- 7728 NO_OVERLAPS createUnitigs()-- read 638938 place 1 edgeTo tig 177 reads # 59 642629- 203769 verified 37097- 44839 position 37097- 44839 covered 0- 7728 SELF Scan reads from #14 to #14 for high coordinate in verified region 3740-4330 Test read # 14 ident 49393 1000- 4330 against verified region 3740- 4330 Failed to find appropriate intersecting read. createUnitigs()-- read 638938 place 2 edgeTo tig 113351 reads # 14 49393- 49393 verified 4330- 3740 position 11535- 3740 covered 7205- 7728 NO_OVERLAPS createUnitigs()-- tig 178 len 22184 first read 517824 with 1 placements - last read 722983 with 1 placements createUnitigs()-- read 517824 place 0 edgeTo tig 178 reads # 1 81694- 258020 verified 17- 6219 position 17- 6219 covered 0- 6203 SELF createUnitigs()-- read 722983 place 0 edgeTo tig 178 reads # 21 420418- 572612 verified 22160- 14633 position 22180- 14633 covered 0- 7541 SELF createUnitigs()-- tig 179 len 13552 first read 111247 with 3 placements - last read 367754 with 2 placements createUnitigs()-- read 111247 place 0 edgeTo tig 179 reads # 1 111249- 281799 verified 6625- 12 position 6625- -478 covered 0- 7044 SELF createUnitigs()-- read 111247 place 1 edgeTo tig 179 reads # 6 522147- 522146 verified 8930- 4809 position 11925- 4809 covered 3216- 7044 SELF Scan reads from #48 to #48 for high coordinate in verified region 8645-10305 Test read # 48 ident 575025 4750- 10305 against verified region 8645- 10305 Failed to find appropriate intersecting read. createUnitigs()-- read 111247 place 2 edgeTo tig 179 reads # 48 575025- 575025 verified 10305- 8645 position 15753- 8645 covered 5448- 7044 NO_OVERLAPS createUnitigs()-- read 367754 place 0 edgeTo tig 179 reads # 4 111248- 572483 verified 5128- 372 position 5128- -3930 covered 0- 5504 SELF createUnitigs()-- read 367754 place 1 edgeTo tig 179 reads # 9 248658- 338968 verified 12135- 6717 position 15812- 6717 covered 3109- 9038 SELF EXPECTED_5' createUnitigs()-- tig 189 len 6767 first read 403946 with 1 placements - last read 213886 with 6 placements createUnitigs()-- read 403946 place 0 edgeTo tig 189 reads # 1 599542- 213885 verified 1676- 17 position 1676- 3 covered 0- 1672 SELF createUnitigs()-- read 213886 place 0 edgeTo tig 189 reads # 0 403946- 213885 verified 6761- 586 position 6763- 586 covered 0- 6172 SELF Scan reads from #16 to #57 for high coordinate in verified region 18171-20918 Test read # 16 ident 514100 12002- 20566 against verified region 18171- 20918 - CANDIDATE hangs -6159 -3840 - SAVED Test read # 17 ident 514099 12292- 20579 against verified region 18171- 20918 - CANDIDATE hangs -5870 -3831 - SAVED Test read # 18 ident 685971 13528- 20133 against verified region 18171- 20918 - CANDIDATE hangs -4619 -4277 Test read # 30 ident 300227 14351- 20918 against verified region 18171- 20918 Test read # 34 ident 394095 15201- 20409 against verified region 18171- 20918 - CANDIDATE hangs -2997 -4011 Test read # 35 ident 565321 15314- 19899 against verified region 18171- 20918 - CANDIDATE hangs -2882 -4503 Test read # 37 ident 531754 15585- 20458 against verified region 18171- 20918 - CANDIDATE hangs -2169 -3485 Test read # 38 ident 660626 15728- 20911 against verified region 18171- 20918 - CANDIDATE hangs -2481 -3489 - SAVED Test read # 39 ident 494000 15739- 20257 against verified region 18171- 20918 - CANDIDATE hangs -2467 -4163 Test read # 42 ident 190923 16141- 20884 against verified region 18171- 20918 - CANDIDATE hangs -2076 -3508 Test read # 44 ident 304932 16492- 19894 against verified region 18171- 20918 - CANDIDATE hangs -1711 -4498 Test read # 45 ident 540570 17230- 19925 against verified region 18171- 20918 - CANDIDATE hangs -986 -4469 Test read # 50 ident 554758 17322- 19723 against verified region 18171- 20918 - CANDIDATE hangs -884 -4669 Test read # 52 ident 513079 17865- 20892 against verified region 18171- 20918 - CANDIDATE hangs -352 -3489 Test read # 53 ident 413181 18330- 20484 against verified region 18171- 20918 - CANDIDATE hangs 131 -3889 Test read # 54 ident 678014 18386- 20900 against verified region 18171- 20918 - CANDIDATE hangs 184 -3488 Test read # 55 ident 60024 18444- 20420 against verified region 18171- 20918 - CANDIDATE hangs 242 -3964 Test read # 57 ident 243463 18739- 20883 against verified region 18171- 20918 - CANDIDATE hangs 531 -3487 Found appropriate intersecting read. createUnitigs()-- read 213886 place 1 edgeTo tig 3048 reads # 16 514100- 243463 verified 18171- 20918 position 18171- 24371 covered 0- 2687 BREAK at pos 20911 read 660626 isLow 0 sim 1.0000 Scan reads from #1 to #7 for low coordinate in verified region 398-3132 Test read # 1 ident 278292 398- 5595 against verified region 398- 3132 Test read # 2 ident 557986 578- 4711 against verified region 398- 3132 - CANDIDATE hangs -1916 -3942 - SAVED Test read # 3 ident 339927 614- 4227 against verified region 398- 3132 - CANDIDATE hangs -1478 -4048 Test read # 4 ident 569935 725- 4840 against verified region 398- 3132 - CANDIDATE hangs -1463 -3533 Test read # 5 ident 525883 834- 5031 against verified region 398- 3132 - CANDIDATE hangs -1491 -3487 Test read # 6 ident 447486 1206- 3894 against verified region 398- 3132 - CANDIDATE hangs -21 -3520 Test read # 7 ident 656425 1621- 4007 against verified region 398- 3132 - CANDIDATE hangs -1506 -5326 Found appropriate intersecting read. createUnitigs()-- read 213886 place 2 edgeTo tig 113092 reads # 1 278292- 656425 verified 3132- 398 position 3132- -3052 covered 0- 2685 BREAK at pos 578 read 557986 isLow 1 sim 1.0000 Scan reads from #0 to #4 for low coordinate in verified region 0-2619 Test read # 0 ident 288976 0- 16004 against verified region 0- 2619 Test read # 1 ident 288975 4- 10560 against verified region 0- 2619 - CANDIDATE hangs -7944 -3574 - SAVED Test read # 2 ident 723069 458- 6389 against verified region 0- 2619 - CANDIDATE hangs -3767 -4025 Test read # 3 ident 699882 1729- 7607 against verified region 0- 2619 - CANDIDATE hangs -5000 -5304 Test read # 4 ident 699883 1869- 7606 against verified region 0- 2619 - CANDIDATE hangs -4993 -5444 Found appropriate intersecting read. createUnitigs()-- read 213886 place 3 edgeTo tig 113093 reads # 0 288976- 699883 verified 2619- 0 position 2619- -3572 covered 0- 2598 NOT_SIMILAR Scan reads from #0 to #0 for high coordinate in verified region 5696-8178 Test read # 0 ident 171455 0- 8178 against verified region 5696- 8178 Failed to find appropriate intersecting read. createUnitigs()-- read 213886 place 4 edgeTo tig 113599 reads # 0 171455- 171455 verified 5696- 8178 position 5696- 11888 covered 0- 2462 NO_OVERLAPS Scan reads from #0 to #4 for high coordinate in verified region 5165-7398 Test read # 0 ident 467180 0- 7398 against verified region 5165- 7398 Test read # 1 ident 409315 3174- 6904 against verified region 5165- 7398 - CANDIDATE hangs -1984 -4462 - SAVED Test read # 4 ident 719736 5312- 7370 against verified region 5165- 7398 - CANDIDATE hangs 134 -4004 Found appropriate intersecting read. createUnitigs()-- read 213886 place 5 edgeTo tig 113600 reads # 0 467180- 719736 verified 5165- 7398 position 5165- 11367 covered 0- 2209 BREAK at pos 6904 read 409315 isLow 0 sim 0.7438 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- tig 196 len 7662 first read 641404 with 12 placements - last read 525368 with 16 placements createUnitigs()-- read 641404 place 0 edgeTo tig 196 reads # 1 641402- 435525 verified 5- 7006 position -2- 7006 covered 0- 6945 SELF Scan reads from #10 to #10 for high coordinate in verified region 12716-14345 Test read # 10 ident 499756 7885- 14345 against verified region 12716- 14345 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 1 edgeTo tig 3668 reads # 10 499756- 499756 verified 12716- 14345 position 12716- 19678 covered 0- 1612 NO_OVERLAPS Scan reads from #0 to #4 for low coordinate in verified region 2883-4172 Test read # 0 ident 27206 0- 4172 against verified region 2883- 4172 Test read # 1 ident 48267 7- 4129 against verified region 2883- 4172 Test read # 4 ident 559461 313- 3927 against verified region 2883- 4172 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 2 edgeTo tig 7193 reads # 0 27206- 559461 verified 4172- 2883 position 9848- 2883 covered 5681- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #58 to #64 for low coordinate in verified region 3973-5831 Test read # 58 ident 704262 3973- 5831 against verified region 3973- 5831 Test read # 64 ident 67942 4534- 5673 against verified region 3973- 5831 - CANDIDATE hangs 2619 -3219 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 3 edgeTo tig 113073 reads # 58 704262- 67942 verified 5831- 3973 position 8219- 1236 covered 2315- 4129 EXPECTED_5' NO_OVERLAPS Scan reads from #125 to #125 for low coordinate in verified region 15109-16604 Test read # 125 ident 674185 12442- 16604 against verified region 15109- 16604 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 4 edgeTo tig 113073 reads # 125 674185- 674185 verified 16604- 15109 position 22063- 15109 covered 5459- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #132 to #158 for low coordinate in verified region 18676-21755 Test read # 132 ident 683374 15248- 21755 against verified region 18676- 21755 Test read # 133 ident 262067 15498- 22938 against verified region 18676- 21755 Test read # 134 ident 99413 15931- 21981 against verified region 18676- 21755 Test read # 137 ident 312548 16480- 21411 against verified region 18676- 21755 Test read # 142 ident 136713 17488- 25193 against verified region 18676- 21755 Test read # 143 ident 339819 17543- 21355 against verified region 18676- 21755 Test read # 148 ident 31901 17923- 23104 against verified region 18676- 21755 Test read # 158 ident 449404 18707- 20027 against verified region 18676- 21755 - CANDIDATE hangs 5450 -214 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 5 edgeTo tig 113073 reads # 132 683374- 449404 verified 21755- 18676 position 25668- 18676 covered 4110- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #127 to #148 for low coordinate in verified region 20919-25193 Test read # 127 ident 31900 13733- 21128 against verified region 20919- 25193 Test read # 128 ident 99412 14758- 21127 against verified region 20919- 25193 Test read # 129 ident 262070 14987- 22660 against verified region 20919- 25193 Test read # 130 ident 31899 15056- 22662 against verified region 20919- 25193 Test read # 131 ident 99411 15187- 21518 against verified region 20919- 25193 Test read # 132 ident 683374 15248- 21755 against verified region 20919- 25193 Test read # 133 ident 262067 15498- 22938 against verified region 20919- 25193 Test read # 134 ident 99413 15931- 21981 against verified region 20919- 25193 Test read # 137 ident 312548 16480- 21411 against verified region 20919- 25193 Test read # 142 ident 136713 17488- 25193 against verified region 20919- 25193 Test read # 143 ident 339819 17543- 21355 against verified region 20919- 25193 Test read # 148 ident 31901 17923- 23104 against verified region 20919- 25193 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 6 edgeTo tig 113073 reads # 127 31900- 31901 verified 25193- 20919 position 27914- 20919 covered 4360- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #1 for high coordinate in verified region 0-2595 Test read # 0 ident 262068 0- 8780 against verified region 0- 2595 Test read # 1 ident 262069 288- 9063 against verified region 0- 2595 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 7 edgeTo tig 113131 reads # 0 262068- 262069 verified 0- 2595 position -4419- 2595 covered 4558- 6945 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #6 for high coordinate in verified region 0-2043 Test read # 0 ident 99410 0- 5806 against verified region 0- 2043 Test read # 6 ident 99414 953- 7295 against verified region 0- 2043 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 8 edgeTo tig 113132 reads # 0 99410- 99414 verified 0- 2043 position -4958- 2043 covered 4778- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #9 to #23 for high coordinate in verified region 1368-4085 Test read # 9 ident 61842 1368- 7401 against verified region 1368- 4085 Test read # 12 ident 245249 1471- 7140 against verified region 1368- 4085 Test read # 14 ident 158973 1644- 6747 against verified region 1368- 4085 Test read # 17 ident 247105 2382- 6646 against verified region 1368- 4085 Test read # 23 ident 635810 2889- 4846 against verified region 1368- 4085 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 9 edgeTo tig 113132 reads # 9 61842- 635810 verified 1368- 4085 position -2902- 4085 covered 4287- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #28 to #28 for high coordinate in verified region 4093-6496 Test read # 28 ident 321645 4093- 7608 against verified region 4093- 6496 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 10 edgeTo tig 113132 reads # 28 321645- 321645 verified 4093- 6496 position -504- 6496 covered 4597- 6945 EXPECTED_5' NO_OVERLAPS Scan reads from #1 to #1 for low coordinate in verified region 4768-6479 Test read # 1 ident 438901 330- 6479 against verified region 4768- 6479 Failed to find appropriate intersecting read. createUnitigs()-- read 641404 place 11 edgeTo tig 113133 reads # 1 438901- 438901 verified 6479- 4768 position 11719- 4768 covered 5240- 6945 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 525368 place 0 edgeTo tig 196 reads # 0 641404- 435525 verified 7656- 1279 position 7656- 1279 covered 8- 6362 SELF EXPECTED_5' Scan reads from #0 to #4 for high coordinate in verified region 2226-4172 Test read # 0 ident 27206 0- 4172 against verified region 2226- 4172 Test read # 1 ident 48267 7- 4129 against verified region 2226- 4172 - CANDIDATE hangs -2213 -4494 - SAVED Test read # 4 ident 559461 313- 3927 against verified region 2226- 4172 - CANDIDATE hangs -1915 -4688 Found appropriate intersecting read. createUnitigs()-- read 525368 place 1 edgeTo tig 7193 reads # 0 27206- 559461 verified 2226- 4172 position 2226- 8622 covered 0- 1906 BREAK at pos 4129 read 48267 isLow 0 sim 1.0000 Scan reads from #7 to #7 for high coordinate in verified region 1909-3344 Test read # 7 ident 384714 1909- 8937 against verified region 1909- 3344 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 2 edgeTo tig 113073 reads # 7 384714- 384714 verified 1909- 3344 position -3177- 3344 covered 5086- 6362 EXPECTED_5' NO_OVERLAPS Scan reads from #55 to #110 for high coordinate in verified region 3784-7733 Test read # 55 ident 489156 3784- 11629 against verified region 3784- 7733 Test read # 68 ident 682071 4854- 8555 against verified region 3784- 7733 Test read # 73 ident 504608 5424- 12567 against verified region 3784- 7733 Test read # 74 ident 38484 5492- 12128 against verified region 3784- 7733 Test read # 76 ident 504609 5572- 11404 against verified region 3784- 7733 Test read # 81 ident 248002 5910- 7705 against verified region 3784- 7733 - CANDIDATE hangs 5251 653 Test read # 82 ident 676409 6041- 13996 against verified region 3784- 7733 Test read # 87 ident 453526 6580- 11489 against verified region 3784- 7733 Test read # 88 ident 519267 6595- 15714 against verified region 3784- 7733 Test read # 95 ident 597462 7750- 17080 against verified region 3784- 7733 Test read # 96 ident 671031 7765- 10416 against verified region 3784- 7733 Test read # 110 ident 715477 8783- 14442 against verified region 3784- 7733 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 3 edgeTo tig 113073 reads # 55 489156- 715477 verified 3784- 7733 position 1267- 7733 covered 3453- 6362 EXPECTED_5' NO_OVERLAPS Scan reads from #152 to #152 for high coordinate in verified region 18285-19564 Test read # 152 ident 15245 18285- 31032 against verified region 18285- 19564 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 4 edgeTo tig 113073 reads # 152 15245- 15245 verified 18285- 19564 position 13094- 19564 covered 5191- 6362 EXPECTED_5' NO_OVERLAPS Scan reads from #125 to #125 for high coordinate in verified region 14453-16604 Test read # 125 ident 674185 12442- 16604 against verified region 14453- 16604 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 5 edgeTo tig 113073 reads # 125 674185- 674185 verified 14453- 16604 position 14453- 20836 covered 0- 2130 NO_OVERLAPS Scan reads from #127 to #235 for high coordinate in verified region 19955-26369 Test read # 127 ident 31900 13733- 21128 against verified region 19955- 26369 - CANDIDATE hangs -5709 -4718 - SAVED Test read # 128 ident 99412 14758- 21127 against verified region 19955- 26369 - CANDIDATE hangs -4793 -4838 Test read # 129 ident 262070 14987- 22660 against verified region 19955- 26369 - CANDIDATE hangs -4378 -3126 - SAVED Test read # 130 ident 31899 15056- 22662 against verified region 19955- 26369 - CANDIDATE hangs -5827 -4643 - SAVED Test read # 131 ident 99411 15187- 21518 against verified region 19955- 26369 - CANDIDATE hangs -3458 -3551 Test read # 132 ident 683374 15248- 21755 against verified region 19955- 26369 - CANDIDATE hangs -3049 -2980 Test read # 133 ident 262067 15498- 22938 against verified region 19955- 26369 - CANDIDATE hangs -4367 -3349 - SAVED Test read # 134 ident 99413 15931- 21981 against verified region 19955- 26369 - CANDIDATE hangs -3185 -3554 Test read # 137 ident 312548 16480- 21411 against verified region 19955- 26369 - CANDIDATE hangs -1641 -3118 Test read # 140 ident 409717 17077- 20044 against verified region 19955- 26369 - CANDIDATE hangs 525 -2913 Test read # 142 ident 136713 17488- 25193 against verified region 19955- 26369 - CANDIDATE hangs -4476 -3203 - SAVED Test read # 143 ident 339819 17543- 21355 against verified region 19955- 26369 - CANDIDATE hangs -282 -2878 Test read # 148 ident 31901 17923- 23104 against verified region 19955- 26369 - CANDIDATE hangs -1742 -2980 Test read # 152 ident 15245 18285- 31032 against verified region 19955- 26369 Test read # 162 ident 612279 18821- 20153 against verified region 19955- 26369 - CANDIDATE hangs 1436 -3628 Test read # 189 ident 113929 22688- 33465 against verified region 19955- 26369 Test read # 193 ident 332544 23013- 27987 against verified region 19955- 26369 Test read # 196 ident 551791 23558- 28795 against verified region 19955- 26369 Test read # 197 ident 600399 23869- 29954 against verified region 19955- 26369 Test read # 198 ident 488028 24235- 30377 against verified region 19955- 26369 Test read # 199 ident 247879 24346- 33542 against verified region 19955- 26369 Test read # 201 ident 640463 24493- 29763 against verified region 19955- 26369 Test read # 202 ident 442980 24607- 29752 against verified region 19955- 26369 Test read # 204 ident 286379 24806- 33009 against verified region 19955- 26369 Test read # 205 ident 82039 25125- 30560 against verified region 19955- 26369 Test read # 207 ident 653988 25197- 30019 against verified region 19955- 26369 Test read # 208 ident 535785 25630- 29827 against verified region 19955- 26369 Test read # 210 ident 406148 25726- 29848 against verified region 19955- 26369 Test read # 212 ident 519268 25878- 29455 against verified region 19955- 26369 Test read # 213 ident 600400 25890- 28757 against verified region 19955- 26369 Test read # 214 ident 188407 25916- 29169 against verified region 19955- 26369 Test read # 215 ident 477436 25927- 31158 against verified region 19955- 26369 Test read # 216 ident 442979 26044- 31096 against verified region 19955- 26369 Test read # 218 ident 491809 26145- 28677 against verified region 19955- 26369 Test read # 219 ident 384715 26162- 29456 against verified region 19955- 26369 Test read # 220 ident 130201 26352- 30054 against verified region 19955- 26369 Test read # 221 ident 33537 26370- 32117 against verified region 19955- 26369 Test read # 223 ident 466242 26489- 30366 against verified region 19955- 26369 Test read # 226 ident 453527 26537- 32273 against verified region 19955- 26369 Test read # 235 ident 342257 27979- 31854 against verified region 19955- 26369 Found appropriate intersecting read. createUnitigs()-- read 525368 place 6 edgeTo tig 113073 reads # 127 31900- 342257 verified 19955- 26369 position 19955- 26369 covered 0- 6362 BREAK at pos 25193 read 136713 isLow 0 sim 1.0000 Scan reads from #1 to #1 for high coordinate in verified region 146-1526 Test read # 1 ident 489155 146- 9241 against verified region 146- 1526 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 7 edgeTo tig 113119 reads # 1 489155- 489155 verified 146- 1526 position -4940- 1526 covered 5086- 6362 EXPECTED_5' NO_OVERLAPS Scan reads from #5 to #5 for high coordinate in verified region 1430-2767 Test read # 5 ident 504519 1430- 10401 against verified region 1430- 2767 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 8 edgeTo tig 113119 reads # 5 504519- 504519 verified 1430- 2767 position -3703- 2767 covered 5133- 6362 EXPECTED_5' NO_OVERLAPS Scan reads from #18 to #50 for high coordinate in verified region 2657-4860 Test read # 18 ident 705297 2657- 5736 against verified region 2657- 4860 Test read # 20 ident 706650 2696- 5653 against verified region 2657- 4860 Test read # 30 ident 712171 3220- 7403 against verified region 2657- 4860 Test read # 33 ident 667405 3314- 6667 against verified region 2657- 4860 Test read # 37 ident 156996 3411- 6697 against verified region 2657- 4860 Test read # 43 ident 104465 3752- 8184 against verified region 2657- 4860 Test read # 45 ident 79195 3847- 7222 against verified region 2657- 4860 Test read # 46 ident 156997 3852- 7010 against verified region 2657- 4860 Test read # 48 ident 486507 4076- 5281 against verified region 2657- 4860 Test read # 49 ident 545819 4207- 7350 against verified region 2657- 4860 Test read # 50 ident 674701 4278- 7152 against verified region 2657- 4860 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 9 edgeTo tig 113119 reads # 18 705297- 674701 verified 2657- 4860 position -1545- 4860 covered 4025- 6362 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #1 for low coordinate in verified region 0-3252 Test read # 0 ident 262068 0- 8780 against verified region 0- 3252 Test read # 1 ident 262069 288- 9063 against verified region 0- 3252 - CANDIDATE hangs -5672 -3347 - SAVED Found appropriate intersecting read. createUnitigs()-- read 525368 place 10 edgeTo tig 113131 reads # 0 262068- 262069 verified 3252- 0 position 3252- -3192 covered 0- 3037 NOT_SIMILAR Scan reads from #0 to #6 for low coordinate in verified region 0-2701 Test read # 0 ident 99410 0- 5806 against verified region 0- 2701 Test read # 6 ident 99414 953- 7295 against verified region 0- 2701 - CANDIDATE hangs -4783 -4861 - SAVED Found appropriate intersecting read. createUnitigs()-- read 525368 place 11 edgeTo tig 113132 reads # 0 99410- 99414 verified 2701- 0 position 2701- -3729 covered 0- 2811 BREAK at pos 953 read 99414 isLow 1 sim 1.0000 Scan reads from #9 to #17 for low coordinate in verified region 1368-4727 Test read # 9 ident 61842 1368- 7401 against verified region 1368- 4727 Test read # 12 ident 245249 1471- 7140 against verified region 1368- 4727 - CANDIDATE hangs -3018 -3769 - SAVED Test read # 14 ident 158973 1644- 6747 against verified region 1368- 4727 - CANDIDATE hangs -2244 -3554 Test read # 16 ident 45247 2077- 4124 against verified region 1368- 4727 - CANDIDATE hangs 847 -3487 Test read # 17 ident 247105 2382- 6646 against verified region 1368- 4727 - CANDIDATE hangs -899 -3054 Found appropriate intersecting read. createUnitigs()-- read 525368 place 12 edgeTo tig 113132 reads # 9 61842- 247105 verified 4727- 1368 position 4727- -1686 covered 0- 3308 BREAK at pos 1471 read 245249 isLow 1 sim 1.0000 Scan reads from #0 to #0 for high coordinate in verified region 5421-6504 Test read # 0 ident 379026 0- 6504 against verified region 5421- 6504 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 13 edgeTo tig 113133 reads # 0 379026- 379026 verified 5421- 6504 position 5421- 11786 covered 0- 1080 NO_OVERLAPS NOT_SIMILAR Scan reads from #10 to #10 for high coordinate in verified region 3633-4789 Test read # 10 ident 248955 3633- 4789 against verified region 3633- 4789 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 14 edgeTo tig 113134 reads # 10 248955- 248955 verified 3633- 4789 position 2773- 9148 covered 860- 2003 EXPECTED_5' NO_OVERLAPS Scan reads from #15 to #25 for low coordinate in verified region 10806-11817 Test read # 15 ident 580041 5929- 11430 against verified region 10806- 11817 Test read # 18 ident 580040 5931- 11426 against verified region 10806- 11817 Test read # 19 ident 580043 5932- 11420 against verified region 10806- 11817 Test read # 22 ident 580045 6527- 11422 against verified region 10806- 11817 Test read # 25 ident 53345 7271- 11817 against verified region 10806- 11817 Failed to find appropriate intersecting read. createUnitigs()-- read 525368 place 15 edgeTo tig 582805 reads # 15 580041- 53345 verified 11817- 10806 position 17193- 10806 covered 5364- 6362 EXPECTED_5' NO_OVERLAPS createUnitigs()-- discarding 4 breakpoints. createUnitigs()-- tig 197 len 14631 first read 223277 with 2 placements - last read 657576 with 6 placements createUnitigs()-- read 223277 place 0 edgeTo tig 197 reads # 1 702323- 400073 verified 349- 4213 position 6- 4213 covered 359- 4193 SELF EXPECTED_5' Scan reads from #10 to #10 for high coordinate in verified region 3850-5711 Test read # 10 ident 575926 3850- 5711 against verified region 3850- 5711 Failed to find appropriate intersecting read. createUnitigs()-- read 223277 place 1 edgeTo tig 15728 reads # 10 575926- 575926 verified 3850- 5711 position 1710- 5963 covered 2140- 3941 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 657576 place 0 edgeTo tig 197 reads # 0 223277- 606848 verified 858- 14581 position 858- 14613 covered 0- 13629 SELF EXPECTED_3' Scan reads from #0 to #0 for low coordinate in verified region 0-1601 Test read # 0 ident 410359 0- 4358 against verified region 0- 1601 Failed to find appropriate intersecting read. createUnitigs()-- read 657576 place 1 edgeTo tig 3097 reads # 0 410359- 410359 verified 0- 1601 position -12172- 1601 covered 12172- 13702 NO_OVERLAPS Scan reads from #4 to #10 for low coordinate in verified region 2654-6232 Test read # 4 ident 171373 2528- 6232 against verified region 2654- 6232 Test read # 5 ident 189296 2549- 6067 against verified region 2654- 6232 Test read # 6 ident 189295 2550- 5991 against verified region 2654- 6232 Test read # 10 ident 575926 3850- 5711 against verified region 2654- 6232 - CANDIDATE hangs 1295 -10617 Failed to find appropriate intersecting read. createUnitigs()-- read 657576 place 2 edgeTo tig 15728 reads # 4 171373- 575926 verified 2654- 6232 position 2632- 16347 covered 0- 3562 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #87 for low coordinate in verified region 392-8170 Test read # 3 ident 356540 392- 1727 against verified region 392- 8170 Test read # 8 ident 156915 633- 2191 against verified region 392- 8170 - CANDIDATE hangs 5416 -6786 Test read # 17 ident 659233 2059- 12923 against verified region 392- 8170 - CANDIDATE hangs 7793 4708 - SAVED Test read # 18 ident 60547 2155- 13187 against verified region 392- 8170 - CANDIDATE hangs 7849 4951 Test read # 19 ident 60544 2173- 13729 against verified region 392- 8170 - CANDIDATE hangs 7855 5480 Test read # 20 ident 60546 2184- 13680 against verified region 392- 8170 - CANDIDATE hangs 7852 5418 Test read # 21 ident 60545 2199- 13752 against verified region 392- 8170 - CANDIDATE hangs 7872 5523 Test read # 22 ident 578028 2243- 6427 against verified region 392- 8170 - CANDIDATE hangs 7951 -1651 Test read # 23 ident 254826 2471- 13301 against verified region 392- 8170 - CANDIDATE hangs 8244 5088 Test read # 24 ident 330793 2561- 3616 against verified region 392- 8170 - CANDIDATE hangs 8319 -4354 Test read # 25 ident 352239 2699- 6499 against verified region 392- 8170 - CANDIDATE hangs 8402 -1576 Test read # 27 ident 615819 2741- 8750 against verified region 392- 8170 - CANDIDATE hangs 8466 628 Test read # 28 ident 578029 2897- 6460 against verified region 392- 8170 - CANDIDATE hangs 8592 -1613 Test read # 30 ident 507135 3093- 6243 against verified region 392- 8170 - CANDIDATE hangs 8786 -1826 Test read # 31 ident 327542 3200- 9673 against verified region 392- 8170 - CANDIDATE hangs 8924 1535 Test read # 32 ident 481809 3546- 9957 against verified region 392- 8170 - CANDIDATE hangs 9228 1807 Test read # 33 ident 628529 3599- 8949 against verified region 392- 8170 - CANDIDATE hangs 9277 805 Test read # 34 ident 343545 3599- 5474 against verified region 392- 8170 - CANDIDATE hangs 9274 -2579 Test read # 35 ident 361284 3622- 5984 against verified region 392- 8170 - CANDIDATE hangs 9330 -2099 Test read # 36 ident 171859 3693- 7256 against verified region 392- 8170 - CANDIDATE hangs 9399 -849 Test read # 37 ident 324920 3731- 4894 against verified region 392- 8170 - CANDIDATE hangs 9418 -3142 Test read # 38 ident 355872 3810- 5573 against verified region 392- 8170 - CANDIDATE hangs 9504 -2491 Test read # 39 ident 628526 3846- 8927 against verified region 392- 8170 - CANDIDATE hangs 9529 780 Test read # 40 ident 50483 3858- 10053 against verified region 392- 8170 - CANDIDATE hangs 9534 1900 Test read # 41 ident 50482 3860- 10042 against verified region 392- 8170 - CANDIDATE hangs 9534 1897 Test read # 42 ident 50484 3873- 9842 against verified region 392- 8170 - CANDIDATE hangs 9540 1698 Test read # 43 ident 50485 3937- 10038 against verified region 392- 8170 - CANDIDATE hangs 9595 1893 Test read # 44 ident 264984 4024- 10315 against verified region 392- 8170 - CANDIDATE hangs 9703 2153 Test read # 45 ident 454684 4229- 7354 against verified region 392- 8170 - CANDIDATE hangs 9899 -745 Test read # 46 ident 493912 4249- 6704 against verified region 392- 8170 - CANDIDATE hangs 9946 -1410 Test read # 47 ident 50479 4484- 8374 against verified region 392- 8170 - CANDIDATE hangs 10152 253 Test read # 48 ident 164690 4681- 12424 against verified region 392- 8170 - CANDIDATE hangs 10338 4233 Test read # 49 ident 128243 4814- 7312 against verified region 392- 8170 - CANDIDATE hangs 10471 -784 Test read # 51 ident 649361 5055- 7672 against verified region 392- 8170 - CANDIDATE hangs 10718 -440 Test read # 52 ident 575821 5086- 7154 against verified region 392- 8170 - CANDIDATE hangs 10744 -948 Test read # 54 ident 156661 5450- 13197 against verified region 392- 8170 - CANDIDATE hangs 11080 4969 Test read # 55 ident 227091 5453- 6811 against verified region 392- 8170 - CANDIDATE hangs 11108 -1286 Test read # 56 ident 234305 5493- 9982 against verified region 392- 8170 - CANDIDATE hangs 11139 1837 Test read # 57 ident 616667 5501- 12130 against verified region 392- 8170 - CANDIDATE hangs 11126 3937 Test read # 58 ident 623062 5607- 7330 against verified region 392- 8170 - CANDIDATE hangs 11257 -771 Test read # 59 ident 271089 5624- 14251 against verified region 392- 8170 - CANDIDATE hangs 11269 6021 Test read # 60 ident 718901 5726- 10631 against verified region 392- 8170 - CANDIDATE hangs 11383 2504 Test read # 61 ident 280701 5742- 10967 against verified region 392- 8170 - CANDIDATE hangs 11352 2798 Test read # 62 ident 698197 5822- 10661 against verified region 392- 8170 - CANDIDATE hangs 11487 2535 Test read # 63 ident 423438 5984- 7291 against verified region 392- 8170 - CANDIDATE hangs 11618 -812 Test read # 64 ident 290883 6024- 9308 against verified region 392- 8170 - CANDIDATE hangs 11680 1167 Test read # 65 ident 111493 6045- 8491 against verified region 392- 8170 - CANDIDATE hangs 11687 373 Test read # 66 ident 40269 6076- 7193 against verified region 392- 8170 - CANDIDATE hangs 11698 -911 Test read # 67 ident 166874 6296- 13385 against verified region 392- 8170 - CANDIDATE hangs 11921 5164 Test read # 68 ident 40268 6320- 9445 against verified region 392- 8170 - CANDIDATE hangs 11948 1321 Test read # 69 ident 156660 6360- 13197 against verified region 392- 8170 - CANDIDATE hangs 11957 4959 Test read # 70 ident 252818 6364- 12169 against verified region 392- 8170 - CANDIDATE hangs 11971 3960 Test read # 71 ident 252817 6366- 12150 against verified region 392- 8170 - CANDIDATE hangs 11970 3950 Test read # 73 ident 456323 6400- 10955 against verified region 392- 8170 - CANDIDATE hangs 12020 2770 Test read # 74 ident 262693 6428- 10268 against verified region 392- 8170 - CANDIDATE hangs 12079 2130 Test read # 75 ident 549240 6452- 12212 against verified region 392- 8170 - CANDIDATE hangs 12109 4072 Test read # 76 ident 18087 6461- 10889 against verified region 392- 8170 - CANDIDATE hangs 12121 2751 Test read # 77 ident 252816 6483- 12151 against verified region 392- 8170 - CANDIDATE hangs 12103 3939 Test read # 79 ident 90878 7088- 10317 against verified region 392- 8170 - CANDIDATE hangs 12699 2167 Test read # 81 ident 218162 7196- 10202 against verified region 392- 8170 - CANDIDATE hangs 12797 2044 Test read # 82 ident 218161 7210- 10202 against verified region 392- 8170 - CANDIDATE hangs 12812 2055 Test read # 84 ident 283585 7254- 10495 against verified region 392- 8170 - CANDIDATE hangs 12864 2374 Test read # 85 ident 370461 7263- 13224 against verified region 392- 8170 - CANDIDATE hangs 12851 4997 Test read # 87 ident 92129 7579- 12400 against verified region 392- 8170 - CANDIDATE hangs 13167 4212 Found appropriate intersecting read. createUnitigs()-- read 657576 place 3 edgeTo tig 113061 reads # 3 356540- 92129 verified 392- 8170 position -5633- 8170 covered 5169- 13702 BREAK at pos 2059 read 659233 isLow 1 sim 1.0000 Scan reads from #0 to #5 for low coordinate in verified region 0-4850 Test read # 0 ident 541837 0- 11750 against verified region 0- 4850 Test read # 1 ident 541838 12- 12504 against verified region 0- 4850 - CANDIDATE hangs 9070 7641 - SAVED Test read # 2 ident 499458 1921- 12922 against verified region 0- 4850 - CANDIDATE hangs 10958 8074 Test read # 3 ident 673312 2960- 12569 against verified region 0- 4850 - CANDIDATE hangs 11968 7715 Test read # 4 ident 541839 3380- 12533 against verified region 0- 4850 - CANDIDATE hangs 12358 7686 Test read # 5 ident 713390 3660- 13174 against verified region 0- 4850 - CANDIDATE hangs 12654 8329 Found appropriate intersecting read. createUnitigs()-- read 657576 place 4 edgeTo tig 113062 reads # 0 541837- 713390 verified 0- 4850 position -9024- 4850 covered 9070- 13702 BREAK at pos 12 read 541838 isLow 1 sim 0.6039 Scan reads from #0 to #76 for low coordinate in verified region 0-8757 Test read # 0 ident 112222 0- 4752 against verified region 0- 8757 Test read # 1 ident 239169 109- 6212 against verified region 0- 8757 - CANDIDATE hangs 5145 -2535 Test read # 2 ident 112223 111- 4763 against verified region 0- 8757 - CANDIDATE hangs 5165 -3996 Test read # 3 ident 536507 118- 4217 against verified region 0- 8757 - CANDIDATE hangs 5171 -4547 Test read # 4 ident 109876 120- 9075 against verified region 0- 8757 - CANDIDATE hangs 5175 272 - SAVED Test read # 5 ident 482503 121- 3544 against verified region 0- 8757 - CANDIDATE hangs 5175 -5201 Test read # 6 ident 239168 123- 6180 against verified region 0- 8757 - CANDIDATE hangs 5145 -2541 Test read # 7 ident 492720 129- 5575 against verified region 0- 8757 - CANDIDATE hangs 5177 -3184 Test read # 8 ident 145601 129- 4302 against verified region 0- 8757 - CANDIDATE hangs 5174 -4457 Test read # 9 ident 124961 131- 5494 against verified region 0- 8757 - CANDIDATE hangs 5178 -3270 Test read # 10 ident 129491 133- 3025 against verified region 0- 8757 - CANDIDATE hangs 5194 -5707 Test read # 11 ident 239170 137- 6239 against verified region 0- 8757 - CANDIDATE hangs 5163 -2508 Test read # 12 ident 72512 138- 5850 against verified region 0- 8757 - CANDIDATE hangs 5179 -2901 Test read # 13 ident 582258 142- 5461 against verified region 0- 8757 - CANDIDATE hangs 5175 -3306 Test read # 14 ident 342141 145- 7888 against verified region 0- 8757 - CANDIDATE hangs 5177 -875 Test read # 15 ident 614875 146- 6636 against verified region 0- 8757 - CANDIDATE hangs 5177 -2124 Test read # 16 ident 685773 146- 3707 against verified region 0- 8757 - CANDIDATE hangs 5177 -5022 Test read # 17 ident 275268 147- 10936 against verified region 0- 8757 - CANDIDATE hangs 5177 2144 Test read # 18 ident 108022 147- 1451 against verified region 0- 8757 - CANDIDATE hangs 5176 -7235 Test read # 19 ident 275269 148- 12350 against verified region 0- 8757 - CANDIDATE hangs 5173 3556 Test read # 20 ident 261000 149- 5708 against verified region 0- 8757 - CANDIDATE hangs 5177 -3044 Test read # 21 ident 674244 149- 3674 against verified region 0- 8757 - CANDIDATE hangs 5178 -5059 Test read # 22 ident 261001 151- 5698 against verified region 0- 8757 - CANDIDATE hangs 5177 -3049 Test read # 23 ident 349953 152- 1428 against verified region 0- 8757 - CANDIDATE hangs 5175 -7256 Test read # 25 ident 606041 163- 5627 against verified region 0- 8757 - CANDIDATE hangs 5177 -3106 Test read # 26 ident 108021 163- 3131 against verified region 0- 8757 - CANDIDATE hangs 5190 -5583 Test read # 27 ident 452036 167- 3710 against verified region 0- 8757 - CANDIDATE hangs 5192 -5009 Test read # 28 ident 606042 169- 7001 against verified region 0- 8757 - CANDIDATE hangs 5175 -1742 Test read # 29 ident 536813 172- 4087 against verified region 0- 8757 - CANDIDATE hangs 5211 -4661 Test read # 30 ident 536814 225- 6035 against verified region 0- 8757 - CANDIDATE hangs 5262 -2718 Test read # 31 ident 1801 335- 3714 against verified region 0- 8757 - CANDIDATE hangs 5362 -5028 Test read # 32 ident 1802 352- 3448 against verified region 0- 8757 - CANDIDATE hangs 5378 -5285 Test read # 33 ident 240823 369- 2211 against verified region 0- 8757 - CANDIDATE hangs 5414 -6491 Test read # 34 ident 349954 425- 6219 against verified region 0- 8757 - CANDIDATE hangs 5448 -2538 Test read # 35 ident 718422 523- 2428 against verified region 0- 8757 - CANDIDATE hangs 5545 -6273 Test read # 36 ident 352240 531- 7204 against verified region 0- 8757 - CANDIDATE hangs 5551 -1548 Test read # 37 ident 570758 539- 3173 against verified region 0- 8757 - CANDIDATE hangs 5571 -5543 Test read # 40 ident 691393 860- 12226 against verified region 0- 8757 - CANDIDATE hangs 5884 3441 Test read # 42 ident 79018 1020- 5621 against verified region 0- 8757 - CANDIDATE hangs 6032 -3140 Test read # 44 ident 524128 1219- 2408 against verified region 0- 8757 - CANDIDATE hangs 6253 -6290 Test read # 45 ident 212785 1232- 3276 against verified region 0- 8757 - CANDIDATE hangs 6263 -5449 Test read # 46 ident 593823 1236- 4975 against verified region 0- 8757 - CANDIDATE hangs 6276 -3786 Test read # 47 ident 97871 1251- 2301 against verified region 0- 8757 - CANDIDATE hangs 6281 -6394 Test read # 48 ident 591952 1322- 7226 against verified region 0- 8757 - CANDIDATE hangs 6349 -1546 Test read # 49 ident 591951 1330- 7211 against verified region 0- 8757 - CANDIDATE hangs 6353 -1552 Test read # 50 ident 51908 1616- 5469 against verified region 0- 8757 - CANDIDATE hangs 6640 -3290 Test read # 51 ident 13302 2024- 8489 against verified region 0- 8757 - CANDIDATE hangs 7041 -300 Test read # 52 ident 1800 2184- 3251 against verified region 0- 8757 - CANDIDATE hangs 7202 -5455 Test read # 53 ident 568688 2421- 7970 against verified region 0- 8757 - CANDIDATE hangs 7442 -803 Test read # 54 ident 659234 2549- 12011 against verified region 0- 8757 - CANDIDATE hangs 7555 3223 Test read # 55 ident 568689 2587- 7967 against verified region 0- 8757 - CANDIDATE hangs 7593 -800 Test read # 56 ident 111496 2802- 9148 against verified region 0- 8757 - CANDIDATE hangs 7804 349 Test read # 57 ident 111495 2806- 9153 against verified region 0- 8757 - CANDIDATE hangs 7806 355 Test read # 59 ident 672551 3210- 9587 against verified region 0- 8757 - CANDIDATE hangs 8205 789 Test read # 60 ident 629507 3311- 6343 against verified region 0- 8757 - CANDIDATE hangs 8303 -2426 Test read # 61 ident 415187 3395- 9769 against verified region 0- 8757 - CANDIDATE hangs 8373 977 Test read # 62 ident 675687 3566- 8651 against verified region 0- 8757 - CANDIDATE hangs 8556 -158 Test read # 63 ident 596520 3588- 6348 against verified region 0- 8757 - CANDIDATE hangs 8570 -2421 Test read # 64 ident 3877 3663- 6363 against verified region 0- 8757 - CANDIDATE hangs 8637 -2402 Test read # 65 ident 52263 3689- 11929 against verified region 0- 8757 - CANDIDATE hangs 8657 3139 Test read # 66 ident 327543 3956- 10323 against verified region 0- 8757 - CANDIDATE hangs 8916 1532 Test read # 67 ident 327544 3960- 10291 against verified region 0- 8757 - CANDIDATE hangs 8918 1506 Test read # 68 ident 327545 3986- 10302 against verified region 0- 8757 - CANDIDATE hangs 8945 1516 Test read # 69 ident 327546 4094- 10320 against verified region 0- 8757 - CANDIDATE hangs 9048 1535 Test read # 70 ident 524175 4460- 12207 against verified region 0- 8757 - CANDIDATE hangs 9405 3415 Test read # 71 ident 50481 4595- 10669 against verified region 0- 8757 - CANDIDATE hangs 9540 1889 Test read # 72 ident 50480 4603- 10671 against verified region 0- 8757 - CANDIDATE hangs 9550 1891 Test read # 73 ident 343499 4693- 11180 against verified region 0- 8757 - CANDIDATE hangs 9643 2394 Test read # 74 ident 343498 4695- 11310 against verified region 0- 8757 - CANDIDATE hangs 9646 2526 Test read # 75 ident 290882 5154- 8638 against verified region 0- 8757 - CANDIDATE hangs 10102 -146 Test read # 76 ident 432990 5254- 9892 against verified region 0- 8757 - CANDIDATE hangs 10201 1113 Found appropriate intersecting read. createUnitigs()-- read 657576 place 5 edgeTo tig 113088 reads # 0 112222- 432990 verified 0- 8757 position -5013- 8757 covered 5079- 13702 BREAK at pos 120 read 109876 isLow 1 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- tig 201 len 32781 first read 12675 with 1 placements - last read 550708 with 4 placements createUnitigs()-- read 12675 place 0 edgeTo tig 201 reads # 1 344786- 32637 verified 131- 5225 position 4- 5225 covered 130- 5094 SELF EXPECTED_5' createUnitigs()-- read 550708 place 0 edgeTo tig 201 reads # 95 458622- 341777 verified 32774- 26790 position 32774- 26790 covered 0- 5964 SELF Scan reads from #30 to #30 for high coordinate in verified region 4724-6214 Test read # 30 ident 259491 4724- 11564 against verified region 4724- 6214 Failed to find appropriate intersecting read. createUnitigs()-- read 550708 place 1 edgeTo tig 2264 reads # 30 259491- 259491 verified 4724- 6214 position 223- 6214 covered 4501- 5964 EXPECTED_5' NO_OVERLAPS Scan reads from #8 to #17 for low coordinate in verified region 10666-12104 Test read # 8 ident 662251 4734- 11934 against verified region 10666- 12104 Test read # 9 ident 662250 4741- 11947 against verified region 10666- 12104 Test read # 10 ident 662248 4754- 11985 against verified region 10666- 12104 Test read # 11 ident 662249 4810- 11957 against verified region 10666- 12104 Test read # 17 ident 358989 7219- 12104 against verified region 10666- 12104 Failed to find appropriate intersecting read. createUnitigs()-- read 550708 place 2 edgeTo tig 3044 reads # 8 662251- 358989 verified 12104- 10666 position 16670- 10666 covered 4552- 5964 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #29 for low coordinate in verified region 3223-4267 Test read # 3 ident 321534 1084- 4267 against verified region 3223- 4267 Test read # 29 ident 484052 1835- 4040 against verified region 3223- 4267 Failed to find appropriate intersecting read. createUnitigs()-- read 550708 place 3 edgeTo tig 113380 reads # 3 321534- 484052 verified 4267- 3223 position 9250- 3223 covered 4983- 5964 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 202 len 33649 first read 27988 with 1 placements - last read 465092 with 1 placements createUnitigs()-- read 27988 place 0 edgeTo tig 202 reads # 1 27993- 273076 verified 6124- 18 position 6124- 4 covered 0- 6112 SELF createUnitigs()-- read 465092 place 0 edgeTo tig 202 reads # 47 630082- 118103 verified 26042- 33523 position 26042- 33647 covered 0- 7452 SELF EXPECTED_3' createUnitigs()-- tig 212 len 34099 first read 87440 with 1 placements - last read 605001 with 1 placements createUnitigs()-- read 87440 place 0 edgeTo tig 212 reads # 1 87442- 587072 verified 6- 6417 position 3- 6417 covered 0- 6405 SELF createUnitigs()-- read 605001 place 0 edgeTo tig 212 reads # 47 705218- 605000 verified 28326- 34075 position 28326- 34089 covered 0- 5743 SELF EXPECTED_3' createUnitigs()-- tig 216 len 14554 first read 121691 with 1 placements - last read 16726 with 4 placements createUnitigs()-- read 121691 place 0 edgeTo tig 216 reads # 1 121692- 612095 verified 3- 3400 position 2- 3400 covered 0- 3382 SELF Scan reads from #18 to #29 for low coordinate in verified region 17033-18031 Test read # 18 ident 118872 17033- 18698 against verified region 17033- 18031 Test read # 19 ident 605165 17042- 25705 against verified region 17033- 18031 - CANDIDATE hangs -7669 -13454 - SAVED Test read # 20 ident 24733 17045- 25948 against verified region 17033- 18031 - CANDIDATE hangs -7918 -13455 Test read # 21 ident 317319 17045- 24629 against verified region 17033- 18031 - CANDIDATE hangs -6601 -13458 Test read # 22 ident 480782 17053- 18234 against verified region 17033- 18031 - CANDIDATE hangs -218 -13463 Test read # 23 ident 555403 17056- 26109 against verified region 17033- 18031 - CANDIDATE hangs -8049 -13454 Test read # 24 ident 140145 17063- 34454 against verified region 17033- 18031 - CANDIDATE hangs -16415 -13468 Test read # 25 ident 140144 17066- 31346 against verified region 17033- 18031 - CANDIDATE hangs -13308 -13476 Test read # 27 ident 172132 17302- 24713 against verified region 17033- 18031 - CANDIDATE hangs -6680 -13708 Test read # 28 ident 172131 17328- 24610 against verified region 17033- 18031 - CANDIDATE hangs -6574 -13731 Test read # 29 ident 172129 17385- 24706 against verified region 17033- 18031 - CANDIDATE hangs -6673 -13793 Found appropriate intersecting read. createUnitigs()-- read 16726 place 0 edgeTo tig 88 reads # 18 118872- 172129 verified 18031- 17033 position 18031- 3591 covered 0- 949 BREAK at pos 17042 read 605165 isLow 1 sim 0.9910 createUnitigs()-- read 16726 place 1 edgeTo tig 216 reads # 0 121691- 670777 verified 12886- 112 position 14540- 112 covered 1670- 14403 SELF EXPECTED_5' Scan reads from #2 to #39 for low coordinate in verified region 4829-5868 Test read # 2 ident 629273 4829- 8615 against verified region 4829- 5868 Test read # 3 ident 478902 4846- 9466 against verified region 4829- 5868 - CANDIDATE hangs -3605 -13443 - SAVED Test read # 4 ident 717548 4848- 9678 against verified region 4829- 5868 - CANDIDATE hangs -3809 -13446 Test read # 5 ident 622701 4850- 7670 against verified region 4829- 5868 - CANDIDATE hangs -1820 -13446 Test read # 6 ident 545710 4852- 6304 against verified region 4829- 5868 - CANDIDATE hangs -467 -13446 Test read # 7 ident 169479 4854- 10688 against verified region 4829- 5868 - CANDIDATE hangs -4793 -13445 Test read # 8 ident 510488 4859- 10028 against verified region 4829- 5868 - CANDIDATE hangs -4148 -13456 Test read # 9 ident 631550 4860- 9517 against verified region 4829- 5868 - CANDIDATE hangs -3654 -13454 Test read # 10 ident 118873 4862- 9380 against verified region 4829- 5868 - CANDIDATE hangs -3513 -13456 Test read # 11 ident 147804 4863- 8845 against verified region 4829- 5868 - CANDIDATE hangs -2983 -13455 Test read # 12 ident 345375 4863- 8784 against verified region 4829- 5868 - CANDIDATE hangs -2921 -13455 Test read # 13 ident 565797 4863- 8409 against verified region 4829- 5868 - CANDIDATE hangs -2550 -13452 Test read # 14 ident 150019 4864- 11267 against verified region 4829- 5868 - CANDIDATE hangs -5374 -13447 Test read # 15 ident 124275 4864- 10051 against verified region 4829- 5868 - CANDIDATE hangs -4160 -13451 Test read # 16 ident 665219 4864- 8713 against verified region 4829- 5868 - CANDIDATE hangs -2856 -13457 Test read # 17 ident 656571 4864- 8208 against verified region 4829- 5868 - CANDIDATE hangs -2355 -13453 Test read # 18 ident 553595 4865- 8874 against verified region 4829- 5868 - CANDIDATE hangs -3017 -13459 Test read # 19 ident 426192 4865- 8625 against verified region 4829- 5868 - CANDIDATE hangs -2762 -13456 Test read # 20 ident 665132 4866- 9542 against verified region 4829- 5868 - CANDIDATE hangs -3678 -13458 Test read # 21 ident 483187 4867- 11079 against verified region 4829- 5868 - CANDIDATE hangs -5189 -13456 Test read # 22 ident 430950 4869- 12247 against verified region 4829- 5868 - CANDIDATE hangs -6353 -13454 Test read # 23 ident 430949 4869- 12226 against verified region 4829- 5868 - CANDIDATE hangs -6338 -13455 Test read # 24 ident 240987 4869- 10912 against verified region 4829- 5868 - CANDIDATE hangs -5012 -13456 Test read # 25 ident 123828 4870- 11852 against verified region 4829- 5868 - CANDIDATE hangs -5955 -13454 Test read # 26 ident 257767 4870- 10407 against verified region 4829- 5868 - CANDIDATE hangs -4530 -13456 Test read # 27 ident 374454 4871- 12042 against verified region 4829- 5868 - CANDIDATE hangs -6157 -13457 Test read # 28 ident 620852 4874- 8955 against verified region 4829- 5868 - CANDIDATE hangs -3091 -13467 Test read # 29 ident 529418 4875- 8425 against verified region 4829- 5868 - CANDIDATE hangs -2589 -13474 Test read # 30 ident 378532 4878- 12757 against verified region 4829- 5868 - CANDIDATE hangs -6856 -13458 Test read # 31 ident 88648 4889- 9501 against verified region 4829- 5868 - CANDIDATE hangs -3649 -13489 Test read # 32 ident 179995 4899- 10260 against verified region 4829- 5868 - CANDIDATE hangs -4384 -13490 Test read # 33 ident 65975 4907- 6231 against verified region 4829- 5868 - CANDIDATE hangs -404 -13501 Test read # 35 ident 69049 4950- 8834 against verified region 4829- 5868 - CANDIDATE hangs -2975 -13541 Test read # 36 ident 453658 5056- 7240 against verified region 4829- 5868 - CANDIDATE hangs -1400 -13648 Test read # 37 ident 370899 5065- 7255 against verified region 4829- 5868 - CANDIDATE hangs -1406 -13650 Test read # 38 ident 370898 5066- 7247 against verified region 4829- 5868 - CANDIDATE hangs -1396 -13650 Test read # 39 ident 172133 5125- 12561 against verified region 4829- 5868 - CANDIDATE hangs -6671 -13703 Found appropriate intersecting read. createUnitigs()-- read 16726 place 2 edgeTo tig 113065 reads # 2 629273- 172133 verified 5868- 4829 position 5868- -8590 covered 0- 977 BREAK at pos 4846 read 478902 isLow 1 sim 1.0000 Scan reads from #26 to #32 for high coordinate in verified region 9524-16448 Test read # 26 ident 76587 9524- 16448 against verified region 9524- 16448 Test read # 27 ident 581075 9630- 16045 against verified region 9524- 16448 - CANDIDATE hangs 977 -7000 Test read # 28 ident 79427 9634- 15785 against verified region 9524- 16448 - CANDIDATE hangs 981 -7261 Test read # 29 ident 581070 10056- 14628 against verified region 9524- 16448 - CANDIDATE hangs 988 -8917 Test read # 30 ident 268709 10731- 15473 against verified region 9524- 16448 - CANDIDATE hangs 1665 -7977 Test read # 32 ident 664317 12210- 15054 against verified region 9524- 16448 - CANDIDATE hangs 3160 -8482 Failed to find appropriate intersecting read. createUnitigs()-- read 16726 place 3 edgeTo tig 583051 reads # 26 76587- 664317 verified 9524- 16448 position 8918- 23356 covered 505- 7403 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 217 len 41578 first read 174713 with 2 placements - last read 262526 with 1 placements createUnitigs()-- read 174713 place 0 edgeTo tig 217 reads # 1 174712- 152636 verified 5- 5701 position 5- 5701 covered 0- 5674 SELF Scan reads from #6 to #12 for low coordinate in verified region 4995-6802 Test read # 6 ident 530607 271- 6405 against verified region 4995- 6802 Test read # 10 ident 639653 1908- 6802 against verified region 4995- 6802 Test read # 11 ident 451678 2805- 6494 against verified region 4995- 6802 Test read # 12 ident 451679 2880- 6415 against verified region 4995- 6802 Failed to find appropriate intersecting read. createUnitigs()-- read 174713 place 1 edgeTo tig 19534 reads # 6 530607- 451679 verified 6802- 4995 position 10697- 4995 covered 3893- 5674 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 262526 place 0 edgeTo tig 217 reads # 71 263621- 77464 verified 35356- 41363 position 35356- 41564 covered 0- 5961 SELF EXPECTED_3' createUnitigs()-- tig 220 len 17415 first read 109946 with 5 placements - last read 491664 with 1 placements createUnitigs()-- read 109946 place 0 edgeTo tig 220 reads # 1 82468- 229997 verified 8024- 2193 position 8024- -3 covered 0- 5765 SELF EXPECTED_3' Scan reads from #3 to #165 for high coordinate in verified region 10192-13005 Test read # 3 ident 627546 227- 10949 against verified region 10192- 13005 - CANDIDATE hangs 7305 9828 - SAVED Test read # 41 ident 296966 2939- 11311 against verified region 10192- 13005 - CANDIDATE hangs 6955 7172 - SAVED Test read # 53 ident 100147 3347- 12494 against verified region 10192- 13005 - CANDIDATE hangs 5758 6760 - SAVED Test read # 55 ident 100148 3385- 11888 against verified region 10192- 13005 - CANDIDATE hangs 6376 6719 Test read # 61 ident 619534 4176- 11285 against verified region 10192- 13005 - CANDIDATE hangs 6981 5958 Test read # 68 ident 234006 4297- 11665 against verified region 10192- 13005 - CANDIDATE hangs 6602 5830 Test read # 80 ident 488345 4606- 11120 against verified region 10192- 13005 - CANDIDATE hangs 7144 5531 Test read # 81 ident 160564 4620- 11255 against verified region 10192- 13005 - CANDIDATE hangs 7004 5517 Test read # 82 ident 488347 4621- 11133 against verified region 10192- 13005 - CANDIDATE hangs 7152 5560 Test read # 87 ident 705440 4646- 11135 against verified region 10192- 13005 - CANDIDATE hangs 7129 5504 Test read # 88 ident 366481 4685- 11318 against verified region 10192- 13005 - CANDIDATE hangs 6941 5455 Test read # 90 ident 366483 4753- 11320 against verified region 10192- 13005 - CANDIDATE hangs 6931 5371 Test read # 93 ident 495573 4806- 13005 against verified region 10192- 13005 Test read # 96 ident 142480 4849- 12928 against verified region 10192- 13005 - CANDIDATE hangs 5361 5269 - SAVED Test read # 99 ident 60557 5167- 11488 against verified region 10192- 13005 - CANDIDATE hangs 6795 4995 Test read # 100 ident 60556 5170- 11501 against verified region 10192- 13005 - CANDIDATE hangs 6767 4981 Test read # 101 ident 110628 5259- 12921 against verified region 10192- 13005 - CANDIDATE hangs 5370 4888 Test read # 112 ident 44894 5989- 12972 against verified region 10192- 13005 - CANDIDATE hangs 5356 4192 - SAVED Test read # 118 ident 218624 6526- 11900 against verified region 10192- 13005 - CANDIDATE hangs 6362 3654 Test read # 119 ident 234007 7036- 11664 against verified region 10192- 13005 - CANDIDATE hangs 6593 3144 Test read # 121 ident 497665 7326- 11541 against verified region 10192- 13005 - CANDIDATE hangs 6717 2850 Test read # 125 ident 19778 7484- 12954 against verified region 10192- 13005 - CANDIDATE hangs 5360 2727 Test read # 130 ident 19779 8328- 12941 against verified region 10192- 13005 - CANDIDATE hangs 5360 1897 Test read # 132 ident 149878 8447- 12943 against verified region 10192- 13005 - CANDIDATE hangs 5361 1779 Test read # 135 ident 191958 8522- 12662 against verified region 10192- 13005 - CANDIDATE hangs 5628 1723 Test read # 136 ident 554168 8565- 12939 against verified region 10192- 13005 - CANDIDATE hangs 5362 1679 Test read # 139 ident 81470 8845- 12949 against verified region 10192- 13005 - CANDIDATE hangs 5356 1397 Test read # 140 ident 254683 8848- 12927 against verified region 10192- 13005 - CANDIDATE hangs 5361 1393 Test read # 141 ident 158305 8922- 12912 against verified region 10192- 13005 - CANDIDATE hangs 5391 1323 Test read # 143 ident 537144 9217- 12917 against verified region 10192- 13005 - CANDIDATE hangs 5371 1027 Test read # 147 ident 134799 9366- 12930 against verified region 10192- 13005 - CANDIDATE hangs 5367 893 Test read # 148 ident 649242 9484- 12802 against verified region 10192- 13005 - CANDIDATE hangs 5480 759 Test read # 149 ident 25375 9574- 12965 against verified region 10192- 13005 - CANDIDATE hangs 5336 689 Test read # 150 ident 572601 9635- 12695 against verified region 10192- 13005 - CANDIDATE hangs 5595 628 Test read # 152 ident 157121 9671- 12704 against verified region 10192- 13005 - CANDIDATE hangs 5588 578 Test read # 153 ident 642503 9954- 12917 against verified region 10192- 13005 - CANDIDATE hangs 5381 315 Test read # 154 ident 208410 9955- 12901 against verified region 10192- 13005 - CANDIDATE hangs 5397 307 Test read # 156 ident 123415 9981- 12881 against verified region 10192- 13005 - CANDIDATE hangs 5412 296 Test read # 159 ident 208823 10063- 12942 against verified region 10192- 13005 - CANDIDATE hangs 5360 205 Test read # 165 ident 99379 10627- 12815 against verified region 10192- 13005 - CANDIDATE hangs 5492 -361 Found appropriate intersecting read. createUnitigs()-- read 109946 place 1 edgeTo tig 306 reads # 3 627546- 99379 verified 13005- 10192 position 18283- 10192 covered 5293- 7969 BREAK at pos 12972 read 44894 isLow 0 sim 1.0000 Scan reads from #10 to #25 for low coordinate in verified region 11463-14129 Test read # 10 ident 44895 11463- 18404 against verified region 11463- 14129 Test read # 11 ident 365738 11467- 18843 against verified region 11463- 14129 - CANDIDATE hangs 5346 4703 - SAVED Test read # 12 ident 372548 11478- 16812 against verified region 11463- 14129 - CANDIDATE hangs 5352 2682 Test read # 13 ident 237463 11482- 18634 against verified region 11463- 14129 - CANDIDATE hangs 5356 4493 Test read # 14 ident 464957 11485- 14887 against verified region 11463- 14129 - CANDIDATE hangs 5359 770 Test read # 15 ident 374678 11487- 16638 against verified region 11463- 14129 - CANDIDATE hangs 5361 2504 Test read # 16 ident 535740 11487- 16235 against verified region 11463- 14129 - CANDIDATE hangs 5362 2117 Test read # 17 ident 541972 11488- 18071 against verified region 11463- 14129 - CANDIDATE hangs 5361 3935 Test read # 18 ident 208876 11488- 17616 against verified region 11463- 14129 - CANDIDATE hangs 5358 3470 Test read # 19 ident 675544 11488- 17605 against verified region 11463- 14129 - CANDIDATE hangs 5362 3475 Test read # 20 ident 423395 11489- 17801 against verified region 11463- 14129 - CANDIDATE hangs 5361 3657 Test read # 21 ident 423394 11489- 17789 against verified region 11463- 14129 - CANDIDATE hangs 5362 3654 Test read # 22 ident 637347 11491- 16246 against verified region 11463- 14129 - CANDIDATE hangs 5363 2117 Test read # 23 ident 372551 11492- 16862 against verified region 11463- 14129 - CANDIDATE hangs 5364 2732 Test read # 24 ident 19777 11493- 16984 against verified region 11463- 14129 - CANDIDATE hangs 5369 2872 Test read # 25 ident 538403 11494- 15703 against verified region 11463- 14129 - CANDIDATE hangs 5365 1583 Found appropriate intersecting read. createUnitigs()-- read 109946 place 2 edgeTo tig 471 reads # 10 44895- 538403 verified 11463- 14129 position 6125- 14129 covered 5346- 7969 NOT_SIMILAR Scan reads from #1 to #9 for high coordinate in verified region 6957-9580 Test read # 1 ident 365739 2284- 9580 against verified region 6957- 9580 Test read # 2 ident 337037 2289- 9567 against verified region 6957- 9580 - CANDIDATE hangs 5355 4676 - SAVED Test read # 3 ident 572600 2800- 8360 against verified region 6957- 9580 - CANDIDATE hangs 6568 4157 Test read # 4 ident 302844 3163- 7898 against verified region 6957- 9580 - CANDIDATE hangs 7035 3793 Test read # 5 ident 454337 4099- 8429 against verified region 6957- 9580 - CANDIDATE hangs 6498 2859 Test read # 6 ident 372552 4276- 9366 against verified region 6957- 9580 - CANDIDATE hangs 5565 2685 Test read # 8 ident 204969 4853- 9554 against verified region 6957- 9580 - CANDIDATE hangs 5364 2106 Test read # 9 ident 105463 5548- 9436 against verified region 6957- 9580 - CANDIDATE hangs 5499 1417 Found appropriate intersecting read. createUnitigs()-- read 109946 place 3 edgeTo tig 471 reads # 1 365739- 105463 verified 9580- 6957 position 14928- 6957 covered 5353- 7969 NOT_SIMILAR Scan reads from #209 to #305 for high coordinate in verified region 30762-33446 Test read # 209 ident 348416 17911- 31526 against verified region 30762- 33446 - CANDIDATE hangs 7216 12789 - SAVED Test read # 230 ident 156595 18835- 33390 against verified region 30762- 33446 - CANDIDATE hangs 5360 11884 - SAVED Test read # 244 ident 627545 19885- 31450 against verified region 30762- 33446 - CANDIDATE hangs 7291 10857 Test read # 255 ident 100939 21335- 33390 against verified region 30762- 33446 - CANDIDATE hangs 5360 9421 Test read # 256 ident 107887 21353- 33395 against verified region 30762- 33446 - CANDIDATE hangs 5360 9409 - SAVED Test read # 257 ident 511949 21387- 32636 against verified region 30762- 33446 - CANDIDATE hangs 6122 9383 Test read # 275 ident 140953 22641- 32434 against verified region 30762- 33446 - CANDIDATE hangs 6315 8123 Test read # 280 ident 239393 22898- 33391 against verified region 30762- 33446 - CANDIDATE hangs 5361 7866 Test read # 281 ident 81471 23513- 33402 against verified region 30762- 33446 - CANDIDATE hangs 5358 7259 - SAVED Test read # 283 ident 296967 23584- 31787 against verified region 30762- 33446 - CANDIDATE hangs 6958 7178 Test read # 286 ident 668413 23737- 33358 against verified region 30762- 33446 - CANDIDATE hangs 5371 7027 Test read # 287 ident 196075 23739- 33446 against verified region 30762- 33446 Test read # 291 ident 418554 24000- 32709 against verified region 30762- 33446 - CANDIDATE hangs 6034 6764 Test read # 292 ident 490949 24620- 33393 against verified region 30762- 33446 - CANDIDATE hangs 5359 6143 Test read # 293 ident 713368 24703- 33170 against verified region 30762- 33446 - CANDIDATE hangs 5581 6064 Test read # 294 ident 649241 24742- 33263 against verified region 30762- 33446 - CANDIDATE hangs 5494 6026 Test read # 296 ident 631754 25078- 32253 against verified region 30762- 33446 - CANDIDATE hangs 6492 5691 Test read # 298 ident 122733 25293- 32798 against verified region 30762- 33446 - CANDIDATE hangs 5948 5475 Test read # 299 ident 140829 25618- 33394 against verified region 30762- 33446 - CANDIDATE hangs 5361 5150 Test read # 300 ident 204802 25692- 33412 against verified region 30762- 33446 - CANDIDATE hangs 5346 5077 - SAVED Test read # 301 ident 204801 25705- 33406 against verified region 30762- 33446 - CANDIDATE hangs 5346 5064 Test read # 302 ident 204803 25717- 33396 against verified region 30762- 33446 - CANDIDATE hangs 5360 5044 Test read # 303 ident 110629 25847- 33382 against verified region 30762- 33446 - CANDIDATE hangs 5358 4921 Test read # 304 ident 96264 29738- 33387 against verified region 30762- 33446 - CANDIDATE hangs 5355 1024 Test read # 305 ident 101467 29931- 33401 against verified region 30762- 33446 - CANDIDATE hangs 5353 838 Found appropriate intersecting read. createUnitigs()-- read 109946 place 4 edgeTo tig 113065 reads # 209 348416- 101467 verified 33446- 30762 position 38751- 30762 covered 5346- 7969 BREAK at pos 33412 read 204802 isLow 0 sim 0.7299 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 491664 place 0 edgeTo tig 220 reads # 5 672055- 204504 verified 12486- 17391 position 12486- 17397 covered 0- 4925 SELF createUnitigs()-- tig 221 len 32849 first read 563237 with 2 placements - last read 714359 with 1 placements createUnitigs()-- read 563237 place 0 edgeTo tig 221 reads # 1 208721- 79667 verified 7- 7388 position 7- 7388 covered 0- 7323 SELF Scan reads from #0 to #2 for high coordinate in verified region 0-1517 Test read # 0 ident 657755 0- 1517 against verified region 0- 1517 Test read # 1 ident 265166 145- 1510 against verified region 0- 1517 - CANDIDATE hangs 2399 -3569 Test read # 2 ident 117350 450- 1465 against verified region 0- 1517 - CANDIDATE hangs 2707 -3614 Failed to find appropriate intersecting read. createUnitigs()-- read 563237 place 1 edgeTo tig 113305 reads # 0 657755- 117350 verified 0- 1517 position -2256- 5081 covered 2258- 3755 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 714359 place 0 edgeTo tig 221 reads # 33 335514- 288631 verified 32782- 26673 position 32852- 26673 covered 99- 6059 SELF EXPECTED_5' createUnitigs()-- tig 225 len 10049 first read 218688 with 9 placements - last read 440985 with 9 placements createUnitigs()-- read 218688 place 0 edgeTo tig 225 reads # 1 440985- 427305 verified 1289- 8950 position -1- 8950 covered 1278- 8940 SELF EXPECTED_5' Scan reads from #15 to #19 for high coordinate in verified region 10039-13797 Test read # 15 ident 161914 10039- 13856 against verified region 10039- 13797 Test read # 16 ident 316940 10929- 13891 against verified region 10039- 13797 Test read # 17 ident 160365 12160- 14078 against verified region 10039- 13797 Test read # 19 ident 408533 12393- 14158 against verified region 10039- 13797 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 1 edgeTo tig 2426 reads # 15 161914- 408533 verified 10039- 13797 position 4796- 13797 covered 5268- 8940 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #15 for low coordinate in verified region 2087-6174 Test read # 3 ident 42657 2087- 5015 against verified region 2087- 6174 Test read # 10 ident 466431 3475- 6009 against verified region 2087- 6174 - CANDIDATE hangs 3546 -2943 Test read # 11 ident 237548 3767- 5421 against verified region 2087- 6174 - CANDIDATE hangs 4104 -3229 Test read # 14 ident 502650 4877- 6170 against verified region 2087- 6174 - CANDIDATE hangs 3391 -4308 Test read # 15 ident 510523 5161- 6174 against verified region 2087- 6174 - CANDIDATE hangs 3388 -4576 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 2 edgeTo tig 2805 reads # 3 42657- 510523 verified 6174- 2087 position 9541- 551 covered 3388- 7385 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #1 for high coordinate in verified region 0-3490 Test read # 0 ident 641970 0- 9675 against verified region 0- 3490 Test read # 1 ident 57871 2129- 8550 against verified region 0- 3490 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 3 edgeTo tig 10052 reads # 0 641970- 57871 verified 0- 3490 position -5485- 3490 covered 5459- 8940 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #7 to #9 for high coordinate in verified region 6848-8490 Test read # 7 ident 645703 6848- 8431 against verified region 6848- 8490 - CANDIDATE hangs 3383 -4040 Test read # 8 ident 721756 6925- 8351 against verified region 6848- 8490 - CANDIDATE hangs 3450 -4116 Test read # 9 ident 295064 7010- 8490 against verified region 6848- 8490 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 4 edgeTo tig 10052 reads # 7 645703- 295064 verified 6848- 8490 position 3472- 12468 covered 3383- 4963 EXPECTED_5' NO_OVERLAPS Scan reads from #37 to #37 for low coordinate in verified region 3048-4374 Test read # 37 ident 294899 3048- 4374 against verified region 3048- 4374 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 5 edgeTo tig 113147 reads # 37 294899- 294899 verified 4374- 3048 position 7990- -978 covered 3616- 4914 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #84 for low coordinate in verified region 6341-11692 Test read # 0 ident 444214 0- 10348 against verified region 6341- 11692 Test read # 8 ident 160815 525- 10915 against verified region 6341- 11692 Test read # 10 ident 656018 673- 11202 against verified region 6341- 11692 Test read # 12 ident 230413 979- 10926 against verified region 6341- 11692 Test read # 14 ident 195065 1607- 10168 against verified region 6341- 11692 Test read # 15 ident 273941 1826- 11316 against verified region 6341- 11692 Test read # 16 ident 107204 2199- 8160 against verified region 6341- 11692 Test read # 17 ident 622103 2333- 8465 against verified region 6341- 11692 Test read # 18 ident 514540 2370- 9344 against verified region 6341- 11692 Test read # 19 ident 369224 2434- 9354 against verified region 6341- 11692 Test read # 20 ident 662096 2455- 8194 against verified region 6341- 11692 Test read # 21 ident 519009 2475- 11692 against verified region 6341- 11692 Test read # 22 ident 622104 2548- 8669 against verified region 6341- 11692 Test read # 23 ident 622105 2556- 8657 against verified region 6341- 11692 Test read # 24 ident 258190 2604- 10906 against verified region 6341- 11692 Test read # 25 ident 193668 2688- 8688 against verified region 6341- 11692 Test read # 26 ident 193671 2689- 8562 against verified region 6341- 11692 Test read # 27 ident 713853 2693- 9712 against verified region 6341- 11692 Test read # 28 ident 604818 2716- 9589 against verified region 6341- 11692 Test read # 29 ident 193673 2758- 8900 against verified region 6341- 11692 Test read # 30 ident 466430 2807- 10157 against verified region 6341- 11692 Test read # 31 ident 264928 2811- 7513 against verified region 6341- 11692 Test read # 32 ident 193672 2829- 8664 against verified region 6341- 11692 Test read # 33 ident 272804 2904- 9882 against verified region 6341- 11692 Test read # 34 ident 425199 2919- 7641 against verified region 6341- 11692 Test read # 35 ident 193670 2941- 9113 against verified region 6341- 11692 Test read # 37 ident 294899 3048- 4374 against verified region 6341- 11692 Test read # 39 ident 177774 3158- 9298 against verified region 6341- 11692 Test read # 40 ident 514539 3179- 10110 against verified region 6341- 11692 Test read # 41 ident 193669 3190- 9235 against verified region 6341- 11692 Test read # 43 ident 354732 3296- 9510 against verified region 6341- 11692 Test read # 50 ident 215470 3642- 10650 against verified region 6341- 11692 Test read # 51 ident 216684 4156- 10349 against verified region 6341- 11692 Test read # 52 ident 175669 4293- 9839 against verified region 6341- 11692 Test read # 53 ident 110056 4433- 9177 against verified region 6341- 11692 Test read # 54 ident 110057 4439- 9157 against verified region 6341- 11692 Test read # 55 ident 110058 4488- 9181 against verified region 6341- 11692 Test read # 56 ident 110055 4510- 9196 against verified region 6341- 11692 Test read # 59 ident 24447 4717- 7657 against verified region 6341- 11692 Test read # 61 ident 358584 5170- 10348 against verified region 6341- 11692 Test read # 62 ident 362690 5276- 9868 against verified region 6341- 11692 Test read # 63 ident 356623 5535- 10580 against verified region 6341- 11692 Test read # 64 ident 296533 5587- 10887 against verified region 6341- 11692 Test read # 65 ident 170454 5640- 10085 against verified region 6341- 11692 Test read # 66 ident 424811 5731- 11012 against verified region 6341- 11692 Test read # 67 ident 10602 5954- 8732 against verified region 6341- 11692 Test read # 68 ident 10601 5973- 8805 against verified region 6341- 11692 Test read # 69 ident 138542 6089- 10914 against verified region 6341- 11692 Test read # 70 ident 171666 6094- 10958 against verified region 6341- 11692 Test read # 71 ident 42660 6127- 10876 against verified region 6341- 11692 Test read # 72 ident 273942 6159- 7824 against verified region 6341- 11692 Test read # 73 ident 42658 6228- 10969 against verified region 6341- 11692 Test read # 74 ident 42662 6241- 10978 against verified region 6341- 11692 Test read # 75 ident 42661 6247- 10996 against verified region 6341- 11692 Test read # 76 ident 42659 6248- 10996 against verified region 6341- 11692 Test read # 77 ident 42665 6250- 10869 against verified region 6341- 11692 Test read # 78 ident 42663 6255- 10997 against verified region 6341- 11692 Test read # 79 ident 42664 6256- 11000 against verified region 6341- 11692 Test read # 80 ident 60511 6958- 10688 against verified region 6341- 11692 - CANDIDATE hangs 3416 -1842 Test read # 81 ident 202099 7062- 10215 against verified region 6341- 11692 - CANDIDATE hangs 3391 -2451 Test read # 82 ident 187287 7144- 10830 against verified region 6341- 11692 - CANDIDATE hangs 4327 -972 Test read # 83 ident 331908 7206- 10714 against verified region 6341- 11692 - CANDIDATE hangs 3388 -2088 Test read # 84 ident 243844 8478- 11351 against verified region 6341- 11692 - CANDIDATE hangs 3390 -2726 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 6 edgeTo tig 113147 reads # 0 444214- 243844 verified 11692- 6341 position 15346- 6341 covered 3384- 8940 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for low coordinate in verified region 0-1035 Test read # 0 ident 531362 0- 1035 against verified region 0- 1035 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 7 edgeTo tig 114127 reads # 0 531362- 531362 verified 1035- 0 position 4426- -4553 covered 3391- 4387 EXPECTED_5' NO_OVERLAPS Scan reads from #10 to #14 for low coordinate in verified region 8004-12276 Test read # 10 ident 541847 3208- 12276 against verified region 8004- 12276 Test read # 11 ident 683138 3938- 9434 against verified region 8004- 12276 Test read # 12 ident 683140 3947- 9428 against verified region 8004- 12276 Test read # 13 ident 683137 3954- 9206 against verified region 8004- 12276 Test read # 14 ident 683139 3971- 9453 against verified region 8004- 12276 Failed to find appropriate intersecting read. createUnitigs()-- read 218688 place 8 edgeTo tig 584134 reads # 10 541847- 683139 verified 12276- 8004 position 16975- 8004 covered 4682- 8940 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 440985 place 0 edgeTo tig 225 reads # 0 218688- 427305 verified 9428- 1286 position 10052- 1286 covered 624- 8736 SELF EXPECTED_5' Scan reads from #15 to #19 for low coordinate in verified region 10039-14158 Test read # 15 ident 161914 10039- 13856 against verified region 10039- 14158 Test read # 16 ident 316940 10929- 13891 against verified region 10039- 14158 - CANDIDATE hangs 1011 -4838 Test read # 17 ident 160365 12160- 14078 against verified region 10039- 14158 - CANDIDATE hangs 821 -6048 Test read # 18 ident 19755 12383- 13915 against verified region 10039- 14158 - CANDIDATE hangs 987 -6267 Test read # 19 ident 408533 12393- 14158 against verified region 10039- 14158 - CANDIDATE hangs 742 -6277 Failed to find appropriate intersecting read. createUnitigs()-- read 440985 place 1 edgeTo tig 2426 reads # 15 161914- 408533 verified 14158- 10039 position 14900- 6100 covered 742- 4766 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #15 for high coordinate in verified region 2087-6174 Test read # 3 ident 42657 2087- 5015 against verified region 2087- 6174 - CANDIDATE hangs 2652 -3196 Test read # 10 ident 466431 3475- 6009 against verified region 2087- 6174 - CANDIDATE hangs 4040 -2254 Test read # 11 ident 237548 3767- 5421 against verified region 2087- 6174 - CANDIDATE hangs 4325 -2815 Test read # 14 ident 502650 4877- 6170 against verified region 2087- 6174 - CANDIDATE hangs 5396 -2102 Test read # 15 ident 510523 5161- 6174 against verified region 2087- 6174 Failed to find appropriate intersecting read. createUnitigs()-- read 440985 place 2 edgeTo tig 2805 reads # 3 42657- 510523 verified 2087- 6174 position -541- 8251 covered 2652- 6637 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #6 for low coordinate in verified region 0-4622 Test read # 0 ident 641970 0- 9675 against verified region 0- 4622 Test read # 1 ident 57871 2129- 8550 against verified region 0- 4622 - CANDIDATE hangs -3949 -6337 - SAVED Test read # 2 ident 12478 3616- 11369 against verified region 0- 4622 - CANDIDATE hangs -6745 -7777 Test read # 3 ident 12477 3629- 11378 against verified region 0- 4622 - CANDIDATE hangs -6749 -7794 Test read # 4 ident 12479 3690- 11302 against verified region 0- 4622 - CANDIDATE hangs -6685 -7853 Test read # 5 ident 12476 3693- 9550 against verified region 0- 4622 - CANDIDATE hangs -4923 -7853 Test read # 6 ident 12480 3732- 11352 against verified region 0- 4622 - CANDIDATE hangs -6695 -7884 Found appropriate intersecting read. createUnitigs()-- read 440985 place 3 edgeTo tig 10052 reads # 0 641970- 12480 verified 4622- 0 position 4622- -4166 covered 0- 4577 NOT_SIMILAR Scan reads from #7 to #9 for low coordinate in verified region 6848-8490 Test read # 7 ident 645703 6848- 8431 against verified region 6848- 8490 Test read # 8 ident 721756 6925- 8351 against verified region 6848- 8490 - CANDIDATE hangs 5209 -2161 Test read # 9 ident 295064 7010- 8490 against verified region 6848- 8490 - CANDIDATE hangs 5070 -2240 Failed to find appropriate intersecting read. createUnitigs()-- read 440985 place 4 edgeTo tig 10052 reads # 7 645703- 295064 verified 8490- 6848 position 13561- 4763 covered 5070- 6645 EXPECTED_5' NO_OVERLAPS Scan reads from #37 to #37 for high coordinate in verified region 3048-4374 Test read # 37 ident 294899 3048- 4374 against verified region 3048- 4374 Failed to find appropriate intersecting read. createUnitigs()-- read 440985 place 5 edgeTo tig 113147 reads # 37 294899- 294899 verified 3048- 4374 position -2071- 6698 covered 5119- 6412 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #84 for high coordinate in verified region 5329-11692 Test read # 0 ident 444214 0- 10348 against verified region 5329- 11692 - CANDIDATE hangs -5418 -3940 - SAVED Test read # 1 ident 193387 388- 6668 against verified region 5329- 11692 - CANDIDATE hangs -5417 -7949 Test read # 2 ident 193389 399- 6638 against verified region 5329- 11692 - CANDIDATE hangs -5405 -7984 Test read # 3 ident 193388 404- 6638 against verified region 5329- 11692 - CANDIDATE hangs -5401 -7985 Test read # 4 ident 193390 408- 6674 against verified region 5329- 11692 - CANDIDATE hangs -5394 -7949 Test read # 8 ident 160815 525- 10915 against verified region 5329- 11692 - CANDIDATE hangs -3582 -2104 - SAVED Test read # 10 ident 656018 673- 11202 against verified region 5329- 11692 - CANDIDATE hangs -3724 -2102 - SAVED Test read # 12 ident 230413 979- 10926 against verified region 5329- 11692 - CANDIDATE hangs -3340 -2290 Test read # 14 ident 195065 1607- 10168 against verified region 5329- 11692 - CANDIDATE hangs -3846 -4159 Test read # 15 ident 273941 1826- 11316 against verified region 5329- 11692 - CANDIDATE hangs -2829 -2227 - SAVED Test read # 16 ident 107204 2199- 8160 against verified region 5329- 11692 - CANDIDATE hangs -3762 -6608 Test read # 17 ident 622103 2333- 8465 against verified region 5329- 11692 - CANDIDATE hangs -3622 -6305 Test read # 18 ident 514540 2370- 9344 against verified region 5329- 11692 - CANDIDATE hangs -3287 -5142 Test read # 19 ident 369224 2434- 9354 against verified region 5329- 11692 - CANDIDATE hangs -3443 -5353 Test read # 20 ident 662096 2455- 8194 against verified region 5329- 11692 - CANDIDATE hangs -3957 -7022 Test read # 21 ident 519009 2475- 11692 against verified region 5329- 11692 Test read # 22 ident 622104 2548- 8669 against verified region 5329- 11692 - CANDIDATE hangs -3607 -6303 Test read # 23 ident 622105 2556- 8657 against verified region 5329- 11692 - CANDIDATE hangs -3603 -6315 Test read # 24 ident 258190 2604- 10906 against verified region 5329- 11692 - CANDIDATE hangs -2306 -2848 Test read # 25 ident 193668 2688- 8688 against verified region 5329- 11692 - CANDIDATE hangs -3473 -6289 Test read # 26 ident 193671 2689- 8562 against verified region 5329- 11692 - CANDIDATE hangs -3465 -6405 Test read # 27 ident 713853 2693- 9712 against verified region 5329- 11692 - CANDIDATE hangs -2742 -4554 Test read # 28 ident 604818 2716- 9589 against verified region 5329- 11692 - CANDIDATE hangs -3243 -5189 Test read # 29 ident 193673 2758- 8900 against verified region 5329- 11692 - CANDIDATE hangs -3466 -6140 Test read # 30 ident 466430 2807- 10157 against verified region 5329- 11692 - CANDIDATE hangs -669 -2135 Test read # 31 ident 264928 2811- 7513 against verified region 5329- 11692 - CANDIDATE hangs -2957 -7035 Test read # 32 ident 193672 2829- 8664 against verified region 5329- 11692 - CANDIDATE hangs -3335 -6308 Test read # 33 ident 272804 2904- 9882 against verified region 5329- 11692 - CANDIDATE hangs -2534 -4387 Test read # 34 ident 425199 2919- 7641 against verified region 5329- 11692 - CANDIDATE hangs -2960 -7030 Test read # 35 ident 193670 2941- 9113 against verified region 5329- 11692 - CANDIDATE hangs -3495 -6134 Test read # 37 ident 294899 3048- 4374 against verified region 5329- 11692 - CANDIDATE hangs 5119 -2324 Test read # 39 ident 177774 3158- 9298 against verified region 5329- 11692 - CANDIDATE hangs -3274 -5948 Test read # 40 ident 514539 3179- 10110 against verified region 5329- 11692 - CANDIDATE hangs -3251 -5142 Test read # 41 ident 193669 3190- 9235 against verified region 5329- 11692 - CANDIDATE hangs -3497 -6265 Test read # 43 ident 354732 3296- 9510 against verified region 5329- 11692 - CANDIDATE hangs -3460 -6061 Test read # 45 ident 718236 3329- 7970 against verified region 5329- 11692 - CANDIDATE hangs -3347 -7487 Test read # 48 ident 697015 3393- 8539 against verified region 5329- 11692 - CANDIDATE hangs -3985 -7623 Test read # 50 ident 215470 3642- 10650 against verified region 5329- 11692 - CANDIDATE hangs -1337 -3172 Test read # 51 ident 216684 4156- 10349 against verified region 5329- 11692 - CANDIDATE hangs -1164 -3777 Test read # 52 ident 175669 4293- 9839 against verified region 5329- 11692 - CANDIDATE hangs 980 -2289 Test read # 53 ident 110056 4433- 9177 against verified region 5329- 11692 - CANDIDATE hangs -947 -4999 Test read # 54 ident 110057 4439- 9157 against verified region 5329- 11692 - CANDIDATE hangs -942 -5009 Test read # 55 ident 110058 4488- 9181 against verified region 5329- 11692 - CANDIDATE hangs -908 -4999 Test read # 56 ident 110055 4510- 9196 against verified region 5329- 11692 - CANDIDATE hangs -907 -4999 Test read # 58 ident 369831 4602- 6952 against verified region 5329- 11692 - CANDIDATE hangs -992 -7398 Test read # 59 ident 24447 4717- 7657 against verified region 5329- 11692 - CANDIDATE hangs -788 -6611 Test read # 60 ident 258448 4929- 6278 against verified region 5329- 11692 - CANDIDATE hangs -833 -8234 Test read # 61 ident 358584 5170- 10348 against verified region 5329- 11692 - CANDIDATE hangs 1276 -2329 Test read # 62 ident 362690 5276- 9868 against verified region 5329- 11692 - CANDIDATE hangs 2121 -2095 Test read # 63 ident 356623 5535- 10580 against verified region 5329- 11692 - CANDIDATE hangs 199 -3531 Test read # 64 ident 296533 5587- 10887 against verified region 5329- 11692 - CANDIDATE hangs 404 -3118 Test read # 65 ident 170454 5640- 10085 against verified region 5329- 11692 - CANDIDATE hangs 1937 -2421 Test read # 66 ident 424811 5731- 11012 against verified region 5329- 11692 - CANDIDATE hangs 1444 -2095 Test read # 67 ident 10602 5954- 8732 against verified region 5329- 11692 - CANDIDATE hangs 634 -5330 Test read # 68 ident 10601 5973- 8805 against verified region 5329- 11692 - CANDIDATE hangs 617 -5299 Test read # 69 ident 138542 6089- 10914 against verified region 5329- 11692 - CANDIDATE hangs 1891 -2108 Test read # 70 ident 171666 6094- 10958 against verified region 5329- 11692 - CANDIDATE hangs 1765 -2180 Test read # 71 ident 42660 6127- 10876 against verified region 5329- 11692 - CANDIDATE hangs 1090 -2981 Test read # 72 ident 273942 6159- 7824 against verified region 5329- 11692 - CANDIDATE hangs 846 -6260 Test read # 73 ident 42658 6228- 10969 against verified region 5329- 11692 - CANDIDATE hangs 1087 -2991 Test read # 74 ident 42662 6241- 10978 against verified region 5329- 11692 - CANDIDATE hangs 1098 -2981 Test read # 75 ident 42661 6247- 10996 against verified region 5329- 11692 - CANDIDATE hangs 1090 -2981 Test read # 76 ident 42659 6248- 10996 against verified region 5329- 11692 - CANDIDATE hangs 1090 -2979 Test read # 77 ident 42665 6250- 10869 against verified region 5329- 11692 - CANDIDATE hangs 1092 -3106 Test read # 78 ident 42663 6255- 10997 against verified region 5329- 11692 - CANDIDATE hangs 1097 -2981 Test read # 79 ident 42664 6256- 11000 against verified region 5329- 11692 - CANDIDATE hangs 1097 -2976 Test read # 80 ident 60511 6958- 10688 against verified region 5329- 11692 - CANDIDATE hangs 2938 -2127 Test read # 81 ident 202099 7062- 10215 against verified region 5329- 11692 - CANDIDATE hangs 3547 -2102 Test read # 82 ident 187287 7144- 10830 against verified region 5329- 11692 - CANDIDATE hangs 2075 -3037 Test read # 83 ident 331908 7206- 10714 against verified region 5329- 11692 - CANDIDATE hangs 3184 -2099 Test read # 84 ident 243844 8478- 11351 against verified region 5329- 11692 - CANDIDATE hangs 3823 -2101 Found appropriate intersecting read. createUnitigs()-- read 440985 place 6 edgeTo tig 113147 reads # 0 444214- 243844 verified 5329- 11692 position 5329- 14143 covered 0- 6641 BREAK at pos 11316 read 273941 isLow 0 sim 1.0000 Scan reads from #0 to #0 for high coordinate in verified region 1042-1871 Test read # 0 ident 10460 0- 1871 against verified region 1042- 1871 Failed to find appropriate intersecting read. createUnitigs()-- read 440985 place 7 edgeTo tig 114126 reads # 0 10460- 10460 verified 1042- 1871 position 1042- 9788 covered 0- 819 NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 0-1035 Test read # 0 ident 531362 0- 1035 against verified region 0- 1035 Failed to find appropriate intersecting read. createUnitigs()-- read 440985 place 8 edgeTo tig 114127 reads # 0 531362- 531362 verified 0- 1035 position -5640- 3137 covered 5640- 6634 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 228 len 20634 first read 238763 with 1 placements - last read 553063 with 3 placements createUnitigs()-- read 238763 place 0 edgeTo tig 228 reads # 1 384436- 605560 verified 1392- 6138 position 2- 6138 covered 1399- 6113 SELF EXPECTED_5' Scan reads from #15 to #59 for high coordinate in verified region 15928-21316 Test read # 15 ident 404540 5968- 20404 against verified region 15928- 21316 - CANDIDATE hangs 3481 9826 - SAVED Test read # 28 ident 682419 10355- 19084 against verified region 15928- 21316 - CANDIDATE hangs 4976 5593 Test read # 30 ident 224297 12540- 20193 against verified region 15928- 21316 - CANDIDATE hangs 3758 3391 Test read # 31 ident 611126 12663- 18874 against verified region 15928- 21316 - CANDIDATE hangs 5129 3245 Test read # 32 ident 611128 12673- 18896 against verified region 15928- 21316 - CANDIDATE hangs 5103 3234 Test read # 33 ident 324400 12887- 18829 against verified region 15928- 21316 - CANDIDATE hangs 5173 3044 Test read # 34 ident 304498 13181- 19196 against verified region 15928- 21316 - CANDIDATE hangs 4810 2748 Test read # 35 ident 304499 13255- 19197 against verified region 15928- 21316 - CANDIDATE hangs 4810 2673 Test read # 36 ident 527954 13385- 18896 against verified region 15928- 21316 - CANDIDATE hangs 5102 2546 Test read # 37 ident 386082 13582- 18185 against verified region 15928- 21316 - CANDIDATE hangs 5813 2327 Test read # 38 ident 386083 13600- 19660 against verified region 15928- 21316 - CANDIDATE hangs 4336 2329 Test read # 39 ident 348696 13606- 20206 against verified region 15928- 21316 - CANDIDATE hangs 3795 2320 Test read # 40 ident 386084 13606- 19640 against verified region 15928- 21316 - CANDIDATE hangs 4352 2321 Test read # 41 ident 348695 13619- 20226 against verified region 15928- 21316 - CANDIDATE hangs 3796 2323 Test read # 42 ident 348697 13912- 20208 against verified region 15928- 21316 - CANDIDATE hangs 3797 2024 Test read # 43 ident 167022 14036- 18015 against verified region 15928- 21316 - CANDIDATE hangs 5978 1883 Test read # 44 ident 239625 14213- 17822 against verified region 15928- 21316 - CANDIDATE hangs 6161 1708 Test read # 45 ident 469624 14259- 19652 against verified region 15928- 21316 - CANDIDATE hangs 4341 1673 Test read # 46 ident 121479 14379- 21198 against verified region 15928- 21316 - CANDIDATE hangs 2729 1555 - SAVED Test read # 48 ident 172160 14557- 19844 against verified region 15928- 21316 - CANDIDATE hangs 4153 1380 Test read # 49 ident 569254 14674- 17883 against verified region 15928- 21316 - CANDIDATE hangs 6101 1257 Test read # 50 ident 569252 14876- 17798 against verified region 15928- 21316 - CANDIDATE hangs 6194 1064 Test read # 51 ident 171868 14957- 19376 against verified region 15928- 21316 - CANDIDATE hangs 4624 978 Test read # 52 ident 624212 14971- 19170 against verified region 15928- 21316 - CANDIDATE hangs 4832 959 Test read # 53 ident 381899 15271- 21316 against verified region 15928- 21316 Test read # 54 ident 648287 15287- 16716 against verified region 15928- 21316 - CANDIDATE hangs 7261 665 Test read # 55 ident 185162 15459- 18332 against verified region 15928- 21316 - CANDIDATE hangs 5662 482 Test read # 56 ident 141645 15462- 16841 against verified region 15928- 21316 - CANDIDATE hangs 7134 483 Test read # 57 ident 232247 16168- 17932 against verified region 15928- 21316 - CANDIDATE hangs 6063 -222 Test read # 58 ident 527960 16523- 18565 against verified region 15928- 21316 - CANDIDATE hangs 5437 -571 Test read # 59 ident 341100 16724- 17862 against verified region 15928- 21316 - CANDIDATE hangs 6136 -770 Found appropriate intersecting read. createUnitigs()-- read 553063 place 0 edgeTo tig 15 reads # 15 404540- 341100 verified 21316- 15928 position 23989- 15928 covered 2633- 8020 BREAK at pos 21198 read 121479 isLow 0 sim 1.0000 createUnitigs()-- read 553063 place 1 edgeTo tig 228 reads # 13 690323- 356130 verified 12622- 20461 position 12596- 20624 covered 0- 7896 SELF EXPECTED_3' Scan reads from #22 to #59 for low coordinate in verified region 4877-7380 Test read # 22 ident 52326 4877- 12986 against verified region 4877- 7380 Test read # 23 ident 52325 4903- 12949 against verified region 4877- 7380 - CANDIDATE hangs 5634 5582 - SAVED Test read # 24 ident 101075 5295- 13472 against verified region 4877- 7380 - CANDIDATE hangs 6032 6087 Test read # 25 ident 101074 5304- 15889 against verified region 4877- 7380 - CANDIDATE hangs 6054 8474 Test read # 26 ident 199260 5419- 10835 against verified region 4877- 7380 - CANDIDATE hangs 6197 3488 Test read # 27 ident 427970 5523- 6747 against verified region 4877- 7380 - CANDIDATE hangs 6221 -582 Test read # 28 ident 112314 5604- 10622 against verified region 4877- 7380 - CANDIDATE hangs 6348 3244 Test read # 29 ident 283588 5676- 12380 against verified region 4877- 7380 - CANDIDATE hangs 6411 4991 Test read # 30 ident 283591 5677- 12385 against verified region 4877- 7380 - CANDIDATE hangs 6412 5007 Test read # 31 ident 283589 5679- 12381 against verified region 4877- 7380 - CANDIDATE hangs 6412 4992 Test read # 32 ident 283590 5700- 12385 against verified region 4877- 7380 - CANDIDATE hangs 6434 5002 Test read # 35 ident 283592 5762- 12389 against verified region 4877- 7380 - CANDIDATE hangs 6495 5011 Test read # 39 ident 569253 6144- 8578 against verified region 4877- 7380 - CANDIDATE hangs 6886 1278 Test read # 40 ident 174305 6156- 9705 against verified region 4877- 7380 - CANDIDATE hangs 6900 2379 Test read # 41 ident 174304 6165- 12337 against verified region 4877- 7380 - CANDIDATE hangs 6900 4935 Test read # 42 ident 174300 6189- 10478 against verified region 4877- 7380 - CANDIDATE hangs 6928 3129 Test read # 43 ident 174301 6200- 12288 against verified region 4877- 7380 - CANDIDATE hangs 6906 4847 Test read # 44 ident 174302 6208- 12297 against verified region 4877- 7380 - CANDIDATE hangs 6906 4853 Test read # 45 ident 174303 6228- 12298 against verified region 4877- 7380 - CANDIDATE hangs 6931 4854 Test read # 46 ident 665927 6381- 12774 against verified region 4877- 7380 - CANDIDATE hangs 7123 5401 Test read # 47 ident 665929 6383- 12771 against verified region 4877- 7380 - CANDIDATE hangs 7125 5403 Test read # 48 ident 665928 6385- 12770 against verified region 4877- 7380 - CANDIDATE hangs 7126 5392 Test read # 49 ident 665931 6388- 12761 against verified region 4877- 7380 - CANDIDATE hangs 7129 5388 Test read # 50 ident 257652 6395- 8118 against verified region 4877- 7380 - CANDIDATE hangs 7130 822 Test read # 51 ident 665930 6399- 12768 against verified region 4877- 7380 - CANDIDATE hangs 7142 5397 Test read # 52 ident 353666 6400- 15278 against verified region 4877- 7380 - CANDIDATE hangs 7123 7854 Test read # 53 ident 665932 6501- 12770 against verified region 4877- 7380 - CANDIDATE hangs 7242 5395 Test read # 54 ident 204611 6514- 15961 against verified region 4877- 7380 - CANDIDATE hangs 7264 8554 Test read # 56 ident 255282 6569- 15208 against verified region 4877- 7380 - CANDIDATE hangs 7275 7722 Test read # 57 ident 349657 6607- 11887 against verified region 4877- 7380 - CANDIDATE hangs 7340 4504 Test read # 59 ident 705578 6709- 13028 against verified region 4877- 7380 - CANDIDATE hangs 7453 5667 Found appropriate intersecting read. createUnitigs()-- read 553063 place 2 edgeTo tig 582080 reads # 22 52326- 705578 verified 4877- 7380 position -734- 7380 covered 5619- 8020 BREAK at pos 4903 read 52325 isLow 1 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 241 len 50427 first read 630665 with 1 placements - last read 402722 with 1 placements createUnitigs()-- read 630665 place 0 edgeTo tig 241 reads # 1 692341- 611049 verified 29- 8530 position 9- 8530 covered 0- 8482 SELF createUnitigs()-- read 402722 place 0 edgeTo tig 241 reads # 49 155677- 91437 verified 50421- 47259 position 50428- 47259 covered 0- 3157 SELF createUnitigs()-- tig 245 len 37009 first read 374852 with 1 placements - last read 646352 with 5 placements createUnitigs()-- read 374852 place 0 edgeTo tig 245 reads # 1 550773- 400216 verified 33- 1607 position -1- 1607 covered 11- 1564 SELF EXPECTED_5' createUnitigs()-- read 646352 place 0 edgeTo tig 245 reads # 53 183281- 646353 verified 36996- 30454 position 36996- 30454 covered 6- 6545 SELF EXPECTED_5' Scan reads from #43 to #44 for high coordinate in verified region 28451-29132 Test read # 43 ident 212312 28451- 30132 against verified region 28451- 29132 Test read # 44 ident 167024 28617- 29784 against verified region 28451- 29132 Failed to find appropriate intersecting read. createUnitigs()-- read 646352 place 1 edgeTo tig 1457 reads # 43 212312- 167024 verified 28451- 29132 position 22580- 29132 covered 5872- 6545 EXPECTED_5' NO_OVERLAPS Scan reads from #7 to #7 for high coordinate in verified region 3261-4105 Test read # 7 ident 587633 3261- 9346 against verified region 3261- 4105 Failed to find appropriate intersecting read. createUnitigs()-- read 646352 place 2 edgeTo tig 22048 reads # 7 587633- 587633 verified 3261- 4105 position -2499- 4105 covered 5760- 6545 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #2 for high coordinate in verified region 184-941 Test read # 2 ident 590751 184- 7174 against verified region 184- 941 Failed to find appropriate intersecting read. createUnitigs()-- read 646352 place 3 edgeTo tig 113385 reads # 2 590751- 590751 verified 184- 941 position -5610- 941 covered 5794- 6545 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #3 for low coordinate in verified region 6730-7285 Test read # 0 ident 519121 0- 7285 against verified region 6730- 7285 Test read # 1 ident 519122 3- 7281 against verified region 6730- 7285 Test read # 2 ident 519124 14- 7274 against verified region 6730- 7285 Test read # 3 ident 519123 29- 7272 against verified region 6730- 7285 Failed to find appropriate intersecting read. createUnitigs()-- read 646352 place 4 edgeTo tig 113946 reads # 0 519121- 519123 verified 7285- 6730 position 13302- 6730 covered 6024- 6545 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 246 len 9794 first read 385043 with 2 placements - last read 376898 with 2 placements Scan reads from #20 to #29 for high coordinate in verified region 5286-10398 Test read # 20 ident 204115 5286- 9826 against verified region 5286- 10398 - CANDIDATE hangs 538 -1531 Test read # 21 ident 199802 6565- 15060 against verified region 5286- 10398 Test read # 22 ident 148045 7336- 13478 against verified region 5286- 10398 Test read # 23 ident 64783 8237- 11953 against verified region 5286- 10398 Test read # 24 ident 717281 8397- 15437 against verified region 5286- 10398 Test read # 25 ident 478002 8507- 16335 against verified region 5286- 10398 Test read # 26 ident 7082 8537- 12017 against verified region 5286- 10398 Test read # 27 ident 85038 8660- 11872 against verified region 5286- 10398 Test read # 28 ident 56598 9094- 11881 against verified region 5286- 10398 Test read # 29 ident 207654 9588- 15071 against verified region 5286- 10398 Failed to find appropriate intersecting read. createUnitigs()-- read 385043 place 0 edgeTo tig 94 reads # 20 204115- 207654 verified 10398- 5286 position 10398- 3701 covered 0- 5140 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 385043 place 1 edgeTo tig 246 reads # 1 376897- 235835 verified 6657- 52 position 6657- 17 covered 0- 6671 SELF Scan reads from #20 to #39 for low coordinate in verified region 5286-13555 Test read # 20 ident 204115 5286- 9826 against verified region 5286- 13555 Test read # 21 ident 199802 6565- 15060 against verified region 5286- 13555 - CANDIDATE hangs -1491 -2671 - SAVED Test read # 22 ident 148045 7336- 13478 against verified region 5286- 13555 - CANDIDATE hangs 89 -3466 Test read # 23 ident 64783 8237- 11953 against verified region 5286- 13555 - CANDIDATE hangs 1558 -4357 Test read # 24 ident 717281 8397- 15437 against verified region 5286- 13555 - CANDIDATE hangs -1880 -4533 Test read # 25 ident 478002 8507- 16335 against verified region 5286- 13555 - CANDIDATE hangs -2756 -4651 Test read # 26 ident 7082 8537- 12017 against verified region 5286- 13555 - CANDIDATE hangs 1491 -4664 Test read # 27 ident 85038 8660- 11872 against verified region 5286- 13555 - CANDIDATE hangs 1652 -4789 Test read # 28 ident 56598 9094- 11881 against verified region 5286- 13555 - CANDIDATE hangs 1639 -5204 Test read # 29 ident 207654 9588- 15071 against verified region 5286- 13555 - CANDIDATE hangs -1508 -5722 Test read # 30 ident 88125 11060- 12191 against verified region 5286- 13555 - CANDIDATE hangs 1346 -7162 Test read # 31 ident 88127 11062- 16927 against verified region 5286- 13555 - CANDIDATE hangs -3343 -7164 Test read # 32 ident 88128 11063- 17019 against verified region 5286- 13555 - CANDIDATE hangs -3433 -7162 Test read # 33 ident 88129 11064- 17019 against verified region 5286- 13555 - CANDIDATE hangs -3431 -7162 Test read # 34 ident 88126 11064- 16830 against verified region 5286- 13555 - CANDIDATE hangs -3245 -7162 Test read # 35 ident 88130 11066- 17019 against verified region 5286- 13555 - CANDIDATE hangs -3427 -7164 Test read # 36 ident 207655 11086- 14531 against verified region 5286- 13555 - CANDIDATE hangs -975 -7186 Test read # 37 ident 88131 11087- 16984 against verified region 5286- 13555 - CANDIDATE hangs -3397 -7187 Test read # 38 ident 578439 12636- 14627 against verified region 5286- 13555 - CANDIDATE hangs -1077 -8721 Test read # 39 ident 385146 12643- 15056 against verified region 5286- 13555 - CANDIDATE hangs -1496 -8727 Found appropriate intersecting read. createUnitigs()-- read 376898 place 0 edgeTo tig 94 reads # 20 204115- 385146 verified 13555- 5286 position 13555- 3888 covered 0- 8209 BREAK at pos 6565 read 199802 isLow 1 sim 1.0000 createUnitigs()-- read 376898 place 1 edgeTo tig 246 reads # 0 385043- 235835 verified 9737- 137 position 9792- 137 covered 39- 9623 SELF EXPECTED_5' createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 256 len 25679 first read 438138 with 1 placements - last read 131356 with 2 placements createUnitigs()-- read 438138 place 0 edgeTo tig 256 reads # 1 471052- 408230 verified 1269- 6 position 1269- 0 covered 0- 1261 SELF createUnitigs()-- read 131356 place 0 edgeTo tig 256 reads # 40 210081- 11079 verified 20077- 25678 position 20077- 25678 covered 0- 5522 SELF EXPECTED_3' Scan reads from #10 to #11 for low coordinate in verified region 1686-2801 Test read # 10 ident 721127 1686- 5669 against verified region 1686- 2801 Test read # 11 ident 721128 2232- 5127 against verified region 1686- 2801 - CANDIDATE hangs 4959 2318 - SAVED Found appropriate intersecting read. createUnitigs()-- read 131356 place 1 edgeTo tig 25066 reads # 10 721127- 721128 verified 1686- 2801 position -2729- 2801 covered 4417- 5536 BREAK at pos 2232 read 721128 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 260 len 7667 first read 514849 with 3 placements - last read 70391 with 3 placements createUnitigs()-- read 514849 place 0 edgeTo tig 260 reads # 1 590650- 529927 verified 136- 5526 position 7- 5526 covered 154- 5512 SELF EXPECTED_5' Scan reads from #14 to #14 for high coordinate in verified region 136-1609 Test read # 14 ident 347069 136- 1609 against verified region 136- 1609 Failed to find appropriate intersecting read. createUnitigs()-- read 514849 place 1 edgeTo tig 113169 reads # 14 347069- 347069 verified 136- 1609 position -3330- 2216 covered 3466- 4905 EXPECTED_5' NO_OVERLAPS Scan reads from #25 to #38 for low coordinate in verified region 10884-12986 Test read # 25 ident 310135 6490- 12986 against verified region 10884- 12986 Test read # 27 ident 346252 7597- 11894 against verified region 10884- 12986 Test read # 31 ident 128343 8453- 12980 against verified region 10884- 12986 Test read # 32 ident 29659 8458- 12976 against verified region 10884- 12986 Test read # 33 ident 272082 8470- 12968 against verified region 10884- 12986 Test read # 34 ident 534152 8499- 12262 against verified region 10884- 12986 Test read # 38 ident 522468 11671- 12975 against verified region 10884- 12986 - CANDIDATE hangs 3445 -787 Failed to find appropriate intersecting read. createUnitigs()-- read 514849 place 2 edgeTo tig 113169 reads # 25 310135- 522468 verified 12986- 10884 position 16411- 10884 covered 3434- 5512 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 70391 place 0 edgeTo tig 260 reads # 0 514849- 529927 verified 1023- 7661 position 1023- 7668 covered 0- 6604 SELF Scan reads from #2 to #17 for low coordinate in verified region 109-1888 Test read # 2 ident 586398 109- 1447 against verified region 109- 1888 Test read # 3 ident 636012 110- 1888 against verified region 109- 1888 - CANDIDATE hangs 2410 -2475 Test read # 14 ident 347069 136- 1609 against verified region 109- 1888 - CANDIDATE hangs 2427 -2744 Test read # 17 ident 591543 191- 1603 against verified region 109- 1888 - CANDIDATE hangs 2474 -2745 Failed to find appropriate intersecting read. createUnitigs()-- read 70391 place 1 edgeTo tig 113169 reads # 2 586398- 591543 verified 109- 1888 position -2293- 4355 covered 2407- 4129 EXPECTED_3' NO_OVERLAPS Scan reads from #25 to #38 for high coordinate in verified region 8814-12986 Test read # 25 ident 310135 6490- 12986 against verified region 8814- 12986 Test read # 26 ident 664667 7518- 10116 against verified region 8814- 12986 - CANDIDATE hangs 5332 1302 - SAVED Test read # 27 ident 346252 7597- 11894 against verified region 8814- 12986 - CANDIDATE hangs 3455 1217 - SAVED Test read # 31 ident 128343 8453- 12980 against verified region 8814- 12986 - CANDIDATE hangs 2406 368 - SAVED Test read # 32 ident 29659 8458- 12976 against verified region 8814- 12986 - CANDIDATE hangs 2405 368 Test read # 33 ident 272082 8470- 12968 against verified region 8814- 12986 - CANDIDATE hangs 2404 355 Test read # 34 ident 534152 8499- 12262 against verified region 8814- 12986 - CANDIDATE hangs 3094 323 Test read # 38 ident 522468 11671- 12975 against verified region 8814- 12986 - CANDIDATE hangs 2406 -2922 Found appropriate intersecting read. createUnitigs()-- read 70391 place 2 edgeTo tig 113169 reads # 25 310135- 522468 verified 12986- 8814 position 15382- 8811 covered 2399- 6604 BREAK at pos 12980 read 128343 isLow 0 sim 0.9974 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 261 len 38987 first read 516233 with 1 placements - last read 179860 with 1 placements createUnitigs()-- read 516233 place 0 edgeTo tig 261 reads # 1 714338- 172886 verified 751- 6418 position 0- 6418 covered 747- 6413 SELF EXPECTED_5' createUnitigs()-- read 179860 place 0 edgeTo tig 261 reads # 57 308256- 300969 verified 38955- 32015 position 38985- 32015 covered 32- 6933 SELF EXPECTED_5' createUnitigs()-- tig 266 len 11370 first read 553106 with 4 placements - last read 662024 with 16 placements createUnitigs()-- read 553106 place 0 edgeTo tig 266 reads # 1 553107- 349669 verified 8- 9369 position 8- 9369 covered 5- 9294 SELF EXPECTED_5' Scan reads from #92 to #92 for low coordinate in verified region 17954-21014 Test read # 92 ident 499171 17954- 21014 against verified region 17954- 21014 Failed to find appropriate intersecting read. createUnitigs()-- read 553106 place 1 edgeTo tig 288 reads # 92 499171- 499171 verified 21014- 17954 position 24452- 15106 covered 3438- 6446 EXPECTED_5' NO_OVERLAPS Scan reads from #26 to #106 for high coordinate in verified region 1263-8149 Test read # 26 ident 317323 1263- 3321 against verified region 1263- 8149 - CANDIDATE hangs 3434 -3833 Test read # 29 ident 290596 1295- 2959 against verified region 1263- 8149 - CANDIDATE hangs 3435 -4225 Test read # 30 ident 612589 1313- 3752 against verified region 1263- 8149 - CANDIDATE hangs 3431 -3463 Test read # 67 ident 704263 3106- 7656 against verified region 1263- 8149 - CANDIDATE hangs 4391 -458 Test read # 75 ident 580218 4031- 10785 against verified region 1263- 8149 Test read # 76 ident 399587 4128- 12615 against verified region 1263- 8149 Test read # 77 ident 116489 4307- 10231 against verified region 1263- 8149 Test read # 78 ident 116491 4310- 9827 against verified region 1263- 8149 Test read # 79 ident 709543 4322- 10022 against verified region 1263- 8149 Test read # 80 ident 116488 4326- 11016 against verified region 1263- 8149 Test read # 81 ident 116490 4355- 11143 against verified region 1263- 8149 Test read # 82 ident 355513 4430- 11460 against verified region 1263- 8149 Test read # 87 ident 591290 5227- 10526 against verified region 1263- 8149 Test read # 88 ident 373718 5907- 10245 against verified region 1263- 8149 Test read # 90 ident 355512 6466- 10100 against verified region 1263- 8149 Test read # 91 ident 637670 6495- 13569 against verified region 1263- 8149 Test read # 92 ident 49862 6528- 11553 against verified region 1263- 8149 Test read # 94 ident 529311 6575- 14034 against verified region 1263- 8149 Test read # 95 ident 529310 6579- 14036 against verified region 1263- 8149 Test read # 97 ident 529309 6633- 14048 against verified region 1263- 8149 Test read # 98 ident 637673 6787- 13627 against verified region 1263- 8149 Test read # 106 ident 333215 7307- 10519 against verified region 1263- 8149 Failed to find appropriate intersecting read. createUnitigs()-- read 553106 place 2 edgeTo tig 113085 reads # 26 317323- 333215 verified 1263- 8149 position -1224- 8149 covered 3431- 9294 EXPECTED_5' NO_OVERLAPS Scan reads from #11 to #32 for high coordinate in verified region 1404-6453 Test read # 11 ident 157204 1404- 8273 against verified region 1404- 6453 Test read # 12 ident 157205 1412- 8278 against verified region 1404- 6453 Test read # 13 ident 421121 1583- 10055 against verified region 1404- 6453 Test read # 14 ident 83683 1679- 5349 against verified region 1404- 6453 - CANDIDATE hangs 4708 -975 Test read # 15 ident 421122 1721- 10047 against verified region 1404- 6453 Test read # 20 ident 716807 2416- 6603 against verified region 1404- 6453 Test read # 28 ident 260831 3205- 9439 against verified region 1404- 6453 Test read # 32 ident 683460 3485- 9677 against verified region 1404- 6453 Failed to find appropriate intersecting read. createUnitigs()-- read 553106 place 3 edgeTo tig 113116 reads # 11 157204- 683460 verified 1404- 6453 position -3002- 6453 covered 4409- 9294 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 662024 place 0 edgeTo tig 266 reads # 0 553106- 698579 verified 11315- 5957 position 11347- 5957 covered 0- 5409 SELF Scan reads from #63 to #70 for high coordinate in verified region 11784-13259 Test read # 63 ident 169901 11784- 19441 against verified region 11784- 13259 Test read # 64 ident 221685 12167- 18588 against verified region 11784- 13259 Test read # 65 ident 492173 12419- 17645 against verified region 11784- 13259 Test read # 67 ident 169904 12595- 18291 against verified region 11784- 13259 Test read # 69 ident 681414 12804- 18857 against verified region 11784- 13259 Test read # 70 ident 682096 13078- 22865 against verified region 11784- 13259 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 1 edgeTo tig 288 reads # 63 169901- 682096 verified 11784- 13259 position 7826- 13259 covered 4514- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #81 to #88 for high coordinate in verified region 14282-15474 Test read # 81 ident 635018 14282- 20253 against verified region 14282- 15474 Test read # 83 ident 223024 14482- 21596 against verified region 14282- 15474 Test read # 84 ident 428755 14522- 22336 against verified region 14282- 15474 Test read # 87 ident 629795 14835- 20712 against verified region 14282- 15474 Test read # 88 ident 594307 15099- 17269 against verified region 14282- 15474 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 2 edgeTo tig 288 reads # 81 635018- 594307 verified 14282- 15474 position 10053- 15474 covered 4547- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #91 to #91 for high coordinate in verified region 16153-16993 Test read # 91 ident 709391 16153- 20764 against verified region 16153- 16993 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 3 edgeTo tig 288 reads # 91 709391- 709391 verified 16153- 16993 position 11570- 16993 covered 4583- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #33 to #39 for low coordinate in verified region 7660-9873 Test read # 33 ident 48866 7660- 12993 against verified region 7660- 9873 Test read # 34 ident 381676 7732- 16160 against verified region 7660- 9873 - CANDIDATE hangs -6425 -3421 - SAVED Test read # 36 ident 569323 8230- 9506 against verified region 7660- 9873 - CANDIDATE hangs 187 -3990 Test read # 37 ident 365330 8490- 13836 against verified region 7660- 9873 - CANDIDATE hangs -3924 -4029 Test read # 38 ident 32986 8550- 12063 against verified region 7660- 9873 - CANDIDATE hangs -2301 -4241 Test read # 39 ident 555936 9021- 15066 against verified region 7660- 9873 - CANDIDATE hangs -4680 -4079 Found appropriate intersecting read. createUnitigs()-- read 662024 place 4 edgeTo tig 288 reads # 33 48866- 555936 verified 9873- 7660 position 9873- 4435 covered 0- 2100 BREAK at pos 7732 read 381676 isLow 1 sim 1.0000 Scan reads from #0 to #2 for high coordinate in verified region 8333-9844 Test read # 0 ident 578689 0- 9844 against verified region 8333- 9844 Test read # 1 ident 578688 0- 9844 against verified region 8333- 9844 Test read # 2 ident 578691 38- 9839 against verified region 8333- 9844 - CANDIDATE hangs -8269 -3945 - SAVED Found appropriate intersecting read. createUnitigs()-- read 662024 place 5 edgeTo tig 1465 reads # 0 578689- 578691 verified 8333- 9844 position 8333- 13787 covered 0- 1464 BREAK at pos 9839 read 578691 isLow 0 sim 1.0000 Scan reads from #11 to #11 for low coordinate in verified region 3464-5921 Test read # 11 ident 283236 3464- 10664 against verified region 3464- 5921 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 6 edgeTo tig 1645 reads # 11 283236- 283236 verified 5921- 3464 position 5921- 487 covered 0- 2432 NO_OVERLAPS Scan reads from #0 to #0 for low coordinate in verified region 4404-5809 Test read # 0 ident 234212 0- 5809 against verified region 4404- 5809 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 7 edgeTo tig 36904 reads # 0 234212- 234212 verified 5809- 4404 position 9808- 4404 covered 3999- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #11 to #11 for low coordinate in verified region 11314-14933 Test read # 11 ident 510754 1530- 14933 against verified region 11314- 14933 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 8 edgeTo tig 113084 reads # 11 510754- 510754 verified 14933- 11314 position 16800- 11314 covered 1867- 5409 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #158 to #159 for high coordinate in verified region 13150-14049 Test read # 158 ident 409128 13150- 15255 against verified region 13150- 14049 Test read # 159 ident 492174 13388- 15207 against verified region 13150- 14049 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 9 edgeTo tig 113085 reads # 158 409128- 492174 verified 13150- 14049 position 8635- 14049 covered 4546- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #121 for low coordinate in verified region 4697-10110 Test read # 0 ident 210909 0- 4984 against verified region 4697- 10110 Test read # 2 ident 48794 645- 5332 against verified region 4697- 10110 Test read # 5 ident 142407 835- 6061 against verified region 4697- 10110 Test read # 7 ident 317326 938- 5869 against verified region 4697- 10110 Test read # 10 ident 142408 1047- 4232 against verified region 4697- 10110 Test read # 13 ident 636167 1088- 3500 against verified region 4697- 10110 Test read # 14 ident 433003 1092- 5383 against verified region 4697- 10110 Test read # 15 ident 610332 1137- 8004 against verified region 4697- 10110 Test read # 22 ident 531680 1244- 8700 against verified region 4697- 10110 Test read # 23 ident 414184 1251- 4943 against verified region 4697- 10110 Test read # 35 ident 240331 1443- 8985 against verified region 4697- 10110 Test read # 37 ident 596725 1456- 8341 against verified region 4697- 10110 Test read # 38 ident 98426 1473- 8420 against verified region 4697- 10110 Test read # 40 ident 349670 1882- 10392 against verified region 4697- 10110 Test read # 43 ident 660755 2012- 8977 against verified region 4697- 10110 Test read # 50 ident 17257 2285- 4361 against verified region 4697- 10110 Test read # 51 ident 177518 2312- 8056 against verified region 4697- 10110 Test read # 57 ident 334330 2734- 4969 against verified region 4697- 10110 Test read # 59 ident 530907 2789- 4208 against verified region 4697- 10110 Test read # 67 ident 704263 3106- 7656 against verified region 4697- 10110 Test read # 75 ident 580218 4031- 10785 against verified region 4697- 10110 Test read # 76 ident 399587 4128- 12615 against verified region 4697- 10110 Test read # 77 ident 116489 4307- 10231 against verified region 4697- 10110 Test read # 78 ident 116491 4310- 9827 against verified region 4697- 10110 Test read # 80 ident 116488 4326- 11016 against verified region 4697- 10110 Test read # 81 ident 116490 4355- 11143 against verified region 4697- 10110 Test read # 82 ident 355513 4430- 11460 against verified region 4697- 10110 Test read # 86 ident 662025 5052- 8280 against verified region 4697- 10110 - CANDIDATE hangs 1984 -274 Test read # 87 ident 591290 5227- 10526 against verified region 4697- 10110 - CANDIDATE hangs -215 -258 - SAVED Test read # 88 ident 373718 5907- 10245 against verified region 4697- 10110 - CANDIDATE hangs 37 -920 Test read # 91 ident 637670 6495- 13569 against verified region 4697- 10110 - CANDIDATE hangs -3265 -1525 Test read # 92 ident 49862 6528- 11553 against verified region 4697- 10110 - CANDIDATE hangs -1261 -1562 Test read # 94 ident 529311 6575- 14034 against verified region 4697- 10110 - CANDIDATE hangs -3742 -1606 Test read # 95 ident 529310 6579- 14036 against verified region 4697- 10110 - CANDIDATE hangs -3730 -1602 Test read # 97 ident 529309 6633- 14048 against verified region 4697- 10110 - CANDIDATE hangs -3740 -1650 Test read # 101 ident 494328 6918- 12953 against verified region 4697- 10110 - CANDIDATE hangs -2720 -2060 Test read # 103 ident 494329 7026- 12972 against verified region 4697- 10110 - CANDIDATE hangs -2670 -2094 Test read # 113 ident 497405 7813- 16046 against verified region 4697- 10110 - CANDIDATE hangs -5790 -2949 Test read # 117 ident 147780 8967- 15649 against verified region 4697- 10110 - CANDIDATE hangs -5347 -4107 Test read # 119 ident 60870 9175- 11868 against verified region 4697- 10110 - CANDIDATE hangs -1707 -4430 Test read # 120 ident 715355 9574- 15394 against verified region 4697- 10110 - CANDIDATE hangs -5118 -4746 Test read # 121 ident 392264 9648- 11924 against verified region 4697- 10110 - CANDIDATE hangs -1641 -4783 Found appropriate intersecting read. createUnitigs()-- read 662024 place 10 edgeTo tig 113085 reads # 0 210909- 392264 verified 10110- 4697 position 10110- 4697 covered 0- 5409 BREAK at pos 5227 read 591290 isLow 1 sim 1.0000 Scan reads from #89 to #89 for high coordinate in verified region 11468-12224 Test read # 89 ident 696500 11468- 16996 against verified region 11468- 12224 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 11 edgeTo tig 113116 reads # 89 696500- 696500 verified 11468- 12224 position 6732- 12224 covered 4736- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #96 to #96 for high coordinate in verified region 12428-13368 Test read # 96 ident 218088 12428- 20249 against verified region 12428- 13368 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 12 edgeTo tig 113116 reads # 96 218088- 218088 verified 12428- 13368 position 7875- 13368 covered 4553- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #109 to #109 for high coordinate in verified region 13477-14396 Test read # 109 ident 525261 13477- 17269 against verified region 13477- 14396 Failed to find appropriate intersecting read. createUnitigs()-- read 662024 place 13 edgeTo tig 113116 reads # 109 525261- 525261 verified 13477- 14396 position 8951- 14396 covered 4526- 5409 EXPECTED_5' NO_OVERLAPS Scan reads from #14 to #61 for low coordinate in verified region 3136-8590 Test read # 14 ident 83683 1679- 5349 against verified region 3136- 8590 Test read # 16 ident 704265 1778- 5796 against verified region 3136- 8590 Test read # 20 ident 716807 2416- 6603 against verified region 3136- 8590 Test read # 57 ident 77116 6951- 13073 against verified region 3136- 8590 - CANDIDATE hangs -4191 -3507 - SAVED Test read # 61 ident 595292 8269- 12161 against verified region 3136- 8590 - CANDIDATE hangs -3291 -4848 Found appropriate intersecting read. createUnitigs()-- read 662024 place 14 edgeTo tig 113116 reads # 14 83683- 595292 verified 8590- 3136 position 8590- 3136 covered 0- 5409 BREAK at pos 6951 read 77116 isLow 1 sim 1.0000 Scan reads from #3 to #11 for low coordinate in verified region 2160-4708 Test read # 3 ident 558964 2160- 6744 against verified region 2160- 4708 Test read # 5 ident 680297 2226- 5538 against verified region 2160- 4708 - CANDIDATE hangs -841 -2864 - SAVED Test read # 8 ident 662304 3336- 7022 against verified region 2160- 4708 - CANDIDATE hangs -2277 -4057 Test read # 9 ident 147779 3389- 7300 against verified region 2160- 4708 - CANDIDATE hangs -2583 -4107 Test read # 10 ident 584212 3915- 5719 against verified region 2160- 4708 - CANDIDATE hangs -1016 -4633 Test read # 11 ident 426522 4120- 6334 against verified region 2160- 4708 - CANDIDATE hangs -1650 -4844 Found appropriate intersecting read. createUnitigs()-- read 662024 place 15 edgeTo tig 114131 reads # 3 558964- 426522 verified 4708- 2160 position 4708- -693 covered 0- 2608 BREAK at pos 2226 read 680297 isLow 1 sim 1.0000 createUnitigs()-- discarding 5 breakpoints. createUnitigs()-- tig 281 len 39073 first read 668771 with 1 placements - last read 182096 with 1 placements createUnitigs()-- read 668771 place 0 edgeTo tig 281 reads # 1 35978- 625814 verified 4260- 11 position 4260- 2 covered 0- 4237 SELF createUnitigs()-- read 182096 place 0 edgeTo tig 281 reads # 34 532791- 182097 verified 27971- 37726 position 27971- 39068 covered 0- 9698 SELF EXPECTED_3' createUnitigs()-- tig 282 len 44239 first read 340008 with 1 placements - last read 37736 with 1 placements createUnitigs()-- read 340008 place 0 edgeTo tig 282 reads # 1 340007- 124334 verified 8394- 11 position 8394- 11 covered 0- 8284 SELF EXPECTED_3' createUnitigs()-- read 37736 place 0 edgeTo tig 282 reads # 54 534139- 37735 verified 44231- 41457 position 44231- 41457 covered 0- 2768 SELF createUnitigs()-- tig 286 len 38265 first read 49498 with 3 placements - last read 268599 with 1 placements createUnitigs()-- read 49498 place 0 edgeTo tig 286 reads # 1 49500- 523892 verified 5- 5638 position 2- 5638 covered 0- 5615 SELF Scan reads from #17 to #17 for high coordinate in verified region 551-1716 Test read # 17 ident 218699 551- 1716 against verified region 551- 1716 Failed to find appropriate intersecting read. createUnitigs()-- read 49498 place 1 edgeTo tig 5837 reads # 17 218699- 218699 verified 551- 1716 position -828- 4829 covered 1379- 2502 EXPECTED_5' NO_OVERLAPS Scan reads from #14 to #14 for low coordinate in verified region 4649-5907 Test read # 14 ident 504896 4649- 5907 against verified region 4649- 5907 Failed to find appropriate intersecting read. createUnitigs()-- read 49498 place 2 edgeTo tig 11823 reads # 14 504896- 504896 verified 5907- 4649 position 6744- 1105 covered 837- 2071 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 268599 place 0 edgeTo tig 286 reads # 65 126182- 351862 verified 37100- 31568 position 38260- 31568 covered 1168- 6649 SELF EXPECTED_5' createUnitigs()-- tig 288 len 24485 first read 133468 with 16 placements - last read 103476 with 15 placements createUnitigs()-- read 133468 place 0 edgeTo tig 288 reads # 1 429970- 392262 verified 27- 5883 position 27- 5883 covered 0- 5779 SELF Scan reads from #46 to #46 for low coordinate in verified region 9791-12830 Test read # 46 ident 691028 9791- 18868 against verified region 9791- 12830 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 1 edgeTo tig 288 reads # 46 691028- 691028 verified 12830- 9791 position 12830- 7013 covered 0- 3001 NO_OVERLAPS Scan reads from #43 to #89 for low coordinate in verified region 10541-16333 Test read # 43 ident 254959 9650- 19103 against verified region 10541- 16333 Test read # 46 ident 691028 9791- 18868 against verified region 10541- 16333 Test read # 61 ident 521388 11465- 18872 against verified region 10541- 16333 - CANDIDATE hangs -3358 -1739 - SAVED Test read # 63 ident 169901 11784- 19441 against verified region 10541- 16333 - CANDIDATE hangs -4269 -2413 Test read # 64 ident 221685 12167- 18588 against verified region 10541- 16333 - CANDIDATE hangs -2251 -1619 Test read # 65 ident 492173 12419- 17645 against verified region 10541- 16333 - CANDIDATE hangs -3362 -3919 Test read # 67 ident 169904 12595- 18291 against verified region 10541- 16333 - CANDIDATE hangs -2348 -2428 Test read # 68 ident 252382 12702- 16960 against verified region 10541- 16333 - CANDIDATE hangs -641 -2183 Test read # 69 ident 681414 12804- 18857 against verified region 10541- 16333 - CANDIDATE hangs -3492 -3228 Test read # 70 ident 682096 13078- 22865 against verified region 10541- 16333 - CANDIDATE hangs -5602 -1616 Test read # 71 ident 712322 13156- 21347 against verified region 10541- 16333 - CANDIDATE hangs -5247 -2860 Test read # 72 ident 204460 13524- 20047 against verified region 10541- 16333 - CANDIDATE hangs -2375 -1643 Test read # 73 ident 349671 13554- 17268 against verified region 10541- 16333 - CANDIDATE hangs -1157 -3219 Test read # 74 ident 635015 13584- 19577 against verified region 10541- 16333 - CANDIDATE hangs -5051 -4859 Test read # 79 ident 635017 13945- 19933 against verified region 10541- 16333 - CANDIDATE hangs -2244 -2047 Test read # 80 ident 635016 14089- 20103 against verified region 10541- 16333 - CANDIDATE hangs -3819 -3598 Test read # 81 ident 635018 14282- 20253 against verified region 10541- 16333 - CANDIDATE hangs -4708 -4537 Test read # 82 ident 500643 14362- 17288 against verified region 10541- 16333 - CANDIDATE hangs -321 -3172 Test read # 83 ident 223024 14482- 21596 against verified region 10541- 16333 - CANDIDATE hangs -3073 -1750 Test read # 84 ident 428755 14522- 22336 against verified region 10541- 16333 - CANDIDATE hangs -4505 -2492 Test read # 85 ident 103476 14627- 24485 against verified region 10541- 16333 - CANDIDATE hangs -6403 -2340 Test read # 86 ident 436255 14728- 21152 against verified region 10541- 16333 - CANDIDATE hangs -3280 -2650 Test read # 87 ident 629795 14835- 20712 against verified region 10541- 16333 - CANDIDATE hangs -5236 -5154 Test read # 88 ident 594307 15099- 17269 against verified region 10541- 16333 - CANDIDATE hangs 2206 -1395 Test read # 89 ident 617362 15923- 17322 against verified region 10541- 16333 - CANDIDATE hangs -221 -4606 Found appropriate intersecting read. createUnitigs()-- read 133468 place 2 edgeTo tig 288 reads # 43 254959- 617362 verified 16333- 10541 position 16333- 10541 covered 0- 4163 BREAK at pos 11465 read 521388 isLow 1 sim 1.0000 Scan reads from #88 to #90 for low coordinate in verified region 15099-19426 Test read # 88 ident 594307 15099- 17269 against verified region 15099- 19426 Test read # 89 ident 617362 15923- 17322 against verified region 15099- 19426 - CANDIDATE hangs -221 -4606 Test read # 90 ident 446770 15989- 20920 against verified region 15099- 19426 - CANDIDATE hangs -1494 -2353 - SAVED Found appropriate intersecting read. createUnitigs()-- read 133468 place 3 edgeTo tig 288 reads # 88 594307- 446770 verified 19426- 15099 position 19450- 13670 covered 0- 4384 BREAK at pos 15989 read 446770 isLow 1 sim 1.0000 Scan reads from #91 to #91 for low coordinate in verified region 16153-20477 Test read # 91 ident 709391 16153- 20764 against verified region 16153- 20477 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 4 edgeTo tig 288 reads # 91 709391- 709391 verified 20477- 16153 position 20477- 14725 covered 0- 4351 NO_OVERLAPS Scan reads from #44 to #44 for high coordinate in verified region 28204-28803 Test read # 44 ident 170357 28204- 31442 against verified region 28204- 28803 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 5 edgeTo tig 895 reads # 44 170357- 170357 verified 28204- 28803 position 23014- 28803 covered 5190- 5779 EXPECTED_5' NO_OVERLAPS Scan reads from #16 to #16 for high coordinate in verified region 8910-10246 Test read # 16 ident 106904 8910- 10697 against verified region 8910- 10246 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 6 edgeTo tig 1403 reads # 16 106904- 106904 verified 8910- 10246 position 4457- 10246 covered 4453- 5779 EXPECTED_5' NO_OVERLAPS Scan reads from #3 to #5 for low coordinate in verified region 12925-14121 Test read # 3 ident 15531 2758- 14121 against verified region 12925- 14121 Test read # 4 ident 15532 2760- 14110 against verified region 12925- 14121 Test read # 5 ident 15529 2762- 14017 against verified region 12925- 14121 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 7 edgeTo tig 1465 reads # 3 15531- 15529 verified 14121- 12925 position 18801- 12925 covered 4688- 5779 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #8 to #36 for low coordinate in verified region 3026-3661 Test read # 8 ident 545711 484- 3652 against verified region 3026- 3661 Test read # 9 ident 199302 486- 3630 against verified region 3026- 3661 Test read # 10 ident 545712 507- 3642 against verified region 3026- 3661 Test read # 13 ident 437816 768- 3641 against verified region 3026- 3661 Test read # 15 ident 152060 864- 3654 against verified region 3026- 3661 Test read # 16 ident 603584 873- 3654 against verified region 3026- 3661 Test read # 18 ident 576575 1051- 3610 against verified region 3026- 3661 Test read # 19 ident 576576 1074- 3661 against verified region 3026- 3661 Test read # 22 ident 570324 1351- 3638 against verified region 3026- 3661 Test read # 23 ident 474139 1500- 3598 against verified region 3026- 3661 Test read # 27 ident 580775 1734- 3616 against verified region 3026- 3661 Test read # 28 ident 633685 1793- 3659 against verified region 3026- 3661 Test read # 33 ident 150867 2307- 3628 against verified region 3026- 3661 Test read # 35 ident 381506 2420- 3644 against verified region 3026- 3661 Test read # 36 ident 578156 2477- 3647 against verified region 3026- 3661 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 8 edgeTo tig 11826 reads # 8 545711- 578156 verified 3661- 3026 position 8851- 3026 covered 5197- 5779 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #73 for high coordinate in verified region 2468-6061 Test read # 0 ident 210909 0- 4984 against verified region 2468- 6061 - CANDIDATE hangs -3398 -4230 - SAVED Test read # 1 ident 317324 216- 5196 against verified region 2468- 6061 - CANDIDATE hangs -2067 -2906 - SAVED Test read # 2 ident 48794 645- 5332 against verified region 2468- 6061 - CANDIDATE hangs -3068 -4211 - SAVED Test read # 4 ident 33352 833- 3238 against verified region 2468- 6061 - CANDIDATE hangs -1536 -4926 Test read # 5 ident 142407 835- 6061 against verified region 2468- 6061 Test read # 6 ident 377977 858- 4896 against verified region 2468- 6061 - CANDIDATE hangs -863 -2640 Test read # 7 ident 317326 938- 5869 against verified region 2468- 6061 - CANDIDATE hangs -897 -1791 - SAVED Test read # 8 ident 48793 949- 5629 against verified region 2468- 6061 - CANDIDATE hangs -1177 -2322 Test read # 10 ident 142408 1047- 4232 against verified region 2468- 6061 - CANDIDATE hangs -1333 -3957 Test read # 11 ident 510214 1057- 4833 against verified region 2468- 6061 - CANDIDATE hangs -819 -2871 Test read # 13 ident 636167 1088- 3500 against verified region 2468- 6061 - CANDIDATE hangs -881 -4267 Test read # 14 ident 433003 1092- 5383 against verified region 2468- 6061 - CANDIDATE hangs -717 -2240 Test read # 18 ident 380159 1193- 4016 against verified region 2468- 6061 - CANDIDATE hangs -1197 -4170 Test read # 20 ident 238564 1217- 3547 against verified region 2468- 6061 - CANDIDATE hangs -1208 -4678 Test read # 23 ident 414184 1251- 4943 against verified region 2468- 6061 - CANDIDATE hangs -840 -2956 Test read # 24 ident 335043 1261- 4076 against verified region 2468- 6061 - CANDIDATE hangs -1164 -4159 Test read # 27 ident 33301 1264- 4764 against verified region 2468- 6061 - CANDIDATE hangs -844 -3160 Test read # 28 ident 180482 1277- 4166 against verified region 2468- 6061 - CANDIDATE hangs -888 -3802 Test read # 29 ident 290596 1295- 2959 against verified region 2468- 6061 - CANDIDATE hangs -892 -5025 Test read # 30 ident 612589 1313- 3752 against verified region 2468- 6061 - CANDIDATE hangs -893 -4255 Test read # 31 ident 307276 1345- 4120 against verified region 2468- 6061 - CANDIDATE hangs -575 -3599 Test read # 32 ident 472795 1354- 3362 against verified region 2468- 6061 - CANDIDATE hangs -571 -4360 Test read # 34 ident 304277 1420- 5442 against verified region 2468- 6061 - CANDIDATE hangs -535 -2329 Test read # 39 ident 236056 1551- 4265 against verified region 2468- 6061 - CANDIDATE hangs -1784 -4876 Test read # 42 ident 667071 1984- 3960 against verified region 2468- 6061 - CANDIDATE hangs -893 -4726 Test read # 45 ident 214154 2104- 5939 against verified region 2468- 6061 - CANDIDATE hangs -743 -2756 - SAVED Test read # 46 ident 254958 2121- 4297 against verified region 2468- 6061 - CANDIDATE hangs -806 -4439 Test read # 47 ident 46839 2210- 4525 against verified region 2468- 6061 - CANDIDATE hangs -865 -4352 Test read # 49 ident 108818 2253- 4349 against verified region 2468- 6061 - CANDIDATE hangs 1030 -2674 Test read # 50 ident 17257 2285- 4361 against verified region 2468- 6061 - CANDIDATE hangs -544 -4269 Test read # 53 ident 323159 2389- 5146 against verified region 2468- 6061 - CANDIDATE hangs -384 -3434 Test read # 57 ident 334330 2734- 4969 against verified region 2468- 6061 - CANDIDATE hangs 1855 -1710 Test read # 61 ident 364247 2865- 5350 against verified region 2468- 6061 - CANDIDATE hangs 62 -3250 Test read # 62 ident 136745 2936- 4098 against verified region 2468- 6061 - CANDIDATE hangs -204 -4826 Test read # 63 ident 440828 2957- 5237 against verified region 2468- 6061 - CANDIDATE hangs 507 -2990 Test read # 64 ident 293061 2973- 4484 against verified region 2468- 6061 - CANDIDATE hangs 738 -3540 Test read # 66 ident 539175 3034- 4753 against verified region 2468- 6061 - CANDIDATE hangs -330 -4406 Test read # 70 ident 133467 3270- 4961 against verified region 2468- 6061 - CANDIDATE hangs -575 -4675 Test read # 72 ident 206094 3315- 4515 against verified region 2468- 6061 - CANDIDATE hangs 159 -4431 Test read # 73 ident 410943 3337- 5211 against verified region 2468- 6061 - CANDIDATE hangs -532 -4457 Found appropriate intersecting read. createUnitigs()-- read 133468 place 9 edgeTo tig 113085 reads # 0 210909- 410943 verified 2468- 6061 position 2468- 8276 covered 0- 4101 BREAK at pos 5939 read 214154 isLow 0 sim 1.0000 Scan reads from #158 to #161 for low coordinate in verified region 13150-15525 Test read # 158 ident 409128 13150- 15255 against verified region 13150- 15525 Test read # 159 ident 492174 13388- 15207 against verified region 13150- 15525 - CANDIDATE hangs 379 -3582 Test read # 160 ident 635013 13761- 16981 against verified region 13150- 15525 - CANDIDATE hangs -746 -3296 - SAVED Test read # 161 ident 492172 13974- 15075 against verified region 13150- 15525 - CANDIDATE hangs 36 -4647 Found appropriate intersecting read. createUnitigs()-- read 133468 place 10 edgeTo tig 113085 reads # 158 409128- 492172 verified 15525- 13150 position 15525- 9746 covered 0- 2483 BREAK at pos 13761 read 635013 isLow 1 sim 1.0000 Scan reads from #73 to #73 for low coordinate in verified region 9575-11157 Test read # 73 ident 679240 9575- 17670 against verified region 9575- 11157 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 11 edgeTo tig 113116 reads # 73 679240- 679240 verified 11157- 9575 position 11157- 5243 covered 0- 1447 NO_OVERLAPS Scan reads from #79 to #115 for low coordinate in verified region 10334-15109 Test read # 79 ident 169903 10334- 18002 against verified region 10334- 15109 Test read # 82 ident 169902 10807- 18323 against verified region 10334- 15109 - CANDIDATE hangs -4987 -3347 - SAVED Test read # 83 ident 679143 10818- 19535 against verified region 10334- 15109 - CANDIDATE hangs -5890 -3060 Test read # 85 ident 582658 11148- 17756 against verified region 10334- 15109 - CANDIDATE hangs -2592 -1845 Test read # 87 ident 395689 11415- 13839 against verified region 10334- 15109 - CANDIDATE hangs 112 -3300 Test read # 88 ident 15446 11438- 18237 against verified region 10334- 15109 - CANDIDATE hangs -2748 -1789 Test read # 89 ident 696500 11468- 16996 against verified region 10334- 15109 - CANDIDATE hangs -1563 -1895 Test read # 91 ident 525260 12097- 20012 against verified region 10334- 15109 - CANDIDATE hangs -4698 -2628 Test read # 92 ident 136026 12120- 17995 against verified region 10334- 15109 - CANDIDATE hangs -2131 -2103 Test read # 93 ident 510209 12224- 16174 against verified region 10334- 15109 - CANDIDATE hangs -1521 -3411 Test read # 94 ident 516225 12240- 14474 against verified region 10334- 15109 - CANDIDATE hangs -26 -3624 Test read # 96 ident 218088 12428- 20249 against verified region 10334- 15109 - CANDIDATE hangs -4624 -2652 Test read # 101 ident 169900 12937- 17487 against verified region 10334- 15109 - CANDIDATE hangs -2055 -3346 Test read # 102 ident 461778 12940- 16771 against verified region 10334- 15109 - CANDIDATE hangs -1424 -3426 Test read # 104 ident 596134 13034- 16707 against verified region 10334- 15109 - CANDIDATE hangs -383 -2556 Test read # 105 ident 543220 13061- 15882 against verified region 10334- 15109 - CANDIDATE hangs -871 -3887 Test read # 106 ident 334354 13086- 18872 against verified region 10334- 15109 - CANDIDATE hangs -2728 -2783 Test read # 108 ident 267365 13301- 18183 against verified region 10334- 15109 - CANDIDATE hangs -2223 -3168 Test read # 109 ident 525261 13477- 17269 against verified region 10334- 15109 - CANDIDATE hangs -1853 -3869 Test read # 110 ident 101415 13586- 17296 against verified region 10334- 15109 - CANDIDATE hangs -1947 -4060 Test read # 111 ident 465765 13645- 16749 against verified region 10334- 15109 - CANDIDATE hangs -916 -3622 Test read # 112 ident 699099 13680- 18740 against verified region 10334- 15109 - CANDIDATE hangs -3691 -4460 Test read # 113 ident 1777 13720- 15572 against verified region 10334- 15109 - CANDIDATE hangs -525 -4482 Test read # 114 ident 656118 13747- 15633 against verified region 10334- 15109 - CANDIDATE hangs -501 -4432 Test read # 115 ident 173198 14204- 16855 against verified region 10334- 15109 - CANDIDATE hangs -1569 -4730 Found appropriate intersecting read. createUnitigs()-- read 133468 place 12 edgeTo tig 113116 reads # 79 169903- 173198 verified 15109- 10334 position 15109- 9269 covered 0- 3990 BREAK at pos 10807 read 169902 isLow 1 sim 1.0000 Scan reads from #0 to #2 for low coordinate in verified region 0-813 Test read # 0 ident 505572 0- 14199 against verified region 0- 813 Test read # 1 ident 505574 126- 14320 against verified region 0- 813 - CANDIDATE hangs -11900 -3580 - SAVED Test read # 2 ident 505573 164- 14166 against verified region 0- 813 - CANDIDATE hangs -13282 -5165 Found appropriate intersecting read. createUnitigs()-- read 133468 place 13 edgeTo tig 113117 reads # 0 505572- 505573 verified 813- 0 position 813- -5070 covered 0- 639 BREAK at pos 126 read 505574 isLow 1 sim 0.7983 Scan reads from #1 to #1 for low coordinate in verified region 126-2420 Test read # 1 ident 505574 126- 14320 against verified region 126- 2420 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 14 edgeTo tig 113117 reads # 1 505574- 505574 verified 2420- 126 position 2420- -3454 covered 0- 2199 NO_OVERLAPS Scan reads from #7 to #7 for high coordinate in verified region 2604-3785 Test read # 7 ident 198998 72- 3785 against verified region 2604- 3785 Failed to find appropriate intersecting read. createUnitigs()-- read 133468 place 15 edgeTo tig 583319 reads # 7 198998- 198998 verified 2604- 3785 position 2604- 8390 covered 0- 1174 NO_OVERLAPS NOT_SIMILAR createUnitigs()-- discarding 6 breakpoints. Scan reads from #0 to #4 for high coordinate in verified region 0-2400 Test read # 0 ident 133468 0- 5796 against verified region 0- 2400 Test read # 1 ident 429970 11- 7062 against verified region 0- 2400 Test read # 2 ident 429969 64- 9588 against verified region 0- 2400 Test read # 3 ident 380473 421- 8809 against verified region 0- 2400 Test read # 4 ident 584211 2035- 9365 against verified region 0- 2400 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 0 edgeTo tig 288 reads # 0 133468- 584211 verified 0- 2400 position -7502- 2400 covered 6403- 9831 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 103476 place 1 edgeTo tig 288 reads # 9 78266- 446770 verified 22718- 14595 position 24460- 14595 covered 0- 9831 SELF Scan reads from #7 to #13 for high coordinate in verified region 4192-5269 Test read # 7 ident 503533 4192- 10387 against verified region 4192- 5269 Test read # 8 ident 407049 4584- 10702 against verified region 4192- 5269 Test read # 9 ident 407046 4585- 10708 against verified region 4192- 5269 Test read # 10 ident 407048 4591- 10703 against verified region 4192- 5269 Test read # 11 ident 407045 4592- 10705 against verified region 4192- 5269 Test read # 12 ident 407047 4594- 10704 against verified region 4192- 5269 Test read # 13 ident 407044 4595- 10694 against verified region 4192- 5269 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 2 edgeTo tig 1403 reads # 7 503533- 407044 verified 4192- 5269 position -4579- 5269 covered 9073- 9831 EXPECTED_5' NO_OVERLAPS Scan reads from #14 to #15 for high coordinate in verified region 6790-7854 Test read # 14 ident 503534 6790- 10401 against verified region 6790- 7854 Test read # 15 ident 120200 6830- 10712 against verified region 6790- 7854 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 3 edgeTo tig 1403 reads # 14 503534- 120200 verified 6790- 7854 position -1985- 7854 covered 8465- 9831 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #2 for high coordinate in verified region 38-1030 Test read # 2 ident 578691 38- 9839 against verified region 38- 1030 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 4 edgeTo tig 1465 reads # 2 578691- 578691 verified 38- 1030 position -8882- 1030 covered 8920- 9831 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #1 for high coordinate in verified region 0-2707 Test read # 0 ident 578689 0- 9844 against verified region 0- 2707 Test read # 1 ident 578688 0- 9844 against verified region 0- 2707 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 5 edgeTo tig 1465 reads # 0 578689- 578688 verified 0- 2707 position -7179- 2707 covered 7020- 9831 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #1 to #8 for high coordinate in verified region 35-1585 Test read # 1 ident 705266 35- 5896 against verified region 35- 1585 Test read # 3 ident 705269 113- 5894 against verified region 35- 1585 Test read # 4 ident 399298 355- 5892 against verified region 35- 1585 Test read # 5 ident 386174 479- 5885 against verified region 35- 1585 Test read # 6 ident 386172 480- 6169 against verified region 35- 1585 Test read # 7 ident 386173 481- 5973 against verified region 35- 1585 Test read # 8 ident 386175 486- 6256 against verified region 35- 1585 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 6 edgeTo tig 1645 reads # 1 705266- 386175 verified 35- 1585 position -8295- 1585 covered 8192- 9831 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #18 to #22 for low coordinate in verified region 9807-14602 Test read # 18 ident 481989 5940- 14602 against verified region 9807- 14602 Test read # 22 ident 15533 8194- 10494 against verified region 9807- 14602 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 7 edgeTo tig 1645 reads # 18 481989- 15533 verified 14602- 9807 position 19665- 9807 covered 4918- 9831 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #11 to #85 for high coordinate in verified region 1057-4944 Test read # 11 ident 510214 1057- 4833 against verified region 1057- 4944 - CANDIDATE hangs 8710 2596 Test read # 15 ident 610332 1137- 8004 against verified region 1057- 4944 Test read # 20 ident 238564 1217- 3547 against verified region 1057- 4944 - CANDIDATE hangs -144 -7664 Test read # 22 ident 531680 1244- 8700 against verified region 1057- 4944 Test read # 25 ident 2964 1261- 3109 against verified region 1057- 4944 - CANDIDATE hangs -104 -8110 Test read # 26 ident 317323 1263- 3321 against verified region 1057- 4944 - CANDIDATE hangs -142 -7930 Test read # 29 ident 290596 1295- 2959 against verified region 1057- 4944 - CANDIDATE hangs -142 -8321 Test read # 30 ident 612589 1313- 3752 against verified region 1057- 4944 - CANDIDATE hangs -145 -7557 Test read # 34 ident 304277 1420- 5442 against verified region 1057- 4944 Test read # 35 ident 240331 1443- 8985 against verified region 1057- 4944 Test read # 37 ident 596725 1456- 8341 against verified region 1057- 4944 Test read # 38 ident 98426 1473- 8420 against verified region 1057- 4944 Test read # 39 ident 236056 1551- 4265 against verified region 1057- 4944 - CANDIDATE hangs 4633 -2519 Test read # 40 ident 349670 1882- 10392 against verified region 1057- 4944 Test read # 43 ident 660755 2012- 8977 against verified region 1057- 4944 Test read # 44 ident 83682 2095- 8209 against verified region 1057- 4944 Test read # 45 ident 214154 2104- 5939 against verified region 1057- 4944 Test read # 47 ident 46839 2210- 4525 against verified region 1057- 4944 - CANDIDATE hangs 8045 498 Test read # 48 ident 539583 2250- 9321 against verified region 1057- 4944 Test read # 49 ident 108818 2253- 4349 against verified region 1057- 4944 - CANDIDATE hangs 4000 -3771 Test read # 50 ident 17257 2285- 4361 against verified region 1057- 4944 - CANDIDATE hangs 8368 594 Test read # 51 ident 177518 2312- 8056 against verified region 1057- 4944 Test read # 53 ident 323159 2389- 5146 against verified region 1057- 4944 Test read # 54 ident 650009 2573- 4968 against verified region 1057- 4944 Test read # 55 ident 83681 2684- 8065 against verified region 1057- 4944 Test read # 56 ident 2451 2717- 5316 against verified region 1057- 4944 Test read # 57 ident 334330 2734- 4969 against verified region 1057- 4944 Test read # 58 ident 697207 2766- 4220 against verified region 1057- 4944 - CANDIDATE hangs 8380 -17 Test read # 60 ident 125777 2832- 7137 against verified region 1057- 4944 Test read # 61 ident 364247 2865- 5350 against verified region 1057- 4944 Test read # 63 ident 440828 2957- 5237 against verified region 1057- 4944 Test read # 65 ident 684087 3011- 5340 against verified region 1057- 4944 Test read # 66 ident 539175 3034- 4753 against verified region 1057- 4944 - CANDIDATE hangs 8879 756 Test read # 67 ident 704263 3106- 7656 against verified region 1057- 4944 Test read # 69 ident 673233 3117- 4353 against verified region 1057- 4944 - CANDIDATE hangs 9285 682 Test read # 73 ident 410943 3337- 5211 against verified region 1057- 4944 Test read # 75 ident 580218 4031- 10785 against verified region 1057- 4944 Test read # 76 ident 399587 4128- 12615 against verified region 1057- 4944 Test read # 77 ident 116489 4307- 10231 against verified region 1057- 4944 Test read # 78 ident 116491 4310- 9827 against verified region 1057- 4944 Test read # 79 ident 709543 4322- 10022 against verified region 1057- 4944 Test read # 81 ident 116490 4355- 11143 against verified region 1057- 4944 Test read # 82 ident 355513 4430- 11460 against verified region 1057- 4944 Test read # 85 ident 434620 4790- 6039 against verified region 1057- 4944 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 8 edgeTo tig 113085 reads # 11 510214- 434620 verified 1057- 4944 position -4946- 4944 covered 4000- 9831 EXPECTED_5' NO_OVERLAPS Scan reads from #1 to #34 for high coordinate in verified region 1200-5869 Test read # 1 ident 317324 216- 5196 against verified region 1200- 5869 - CANDIDATE hangs -387 -5248 - SAVED Test read # 2 ident 48794 645- 5332 against verified region 1200- 5869 - CANDIDATE hangs -144 -5296 - SAVED Test read # 7 ident 317326 938- 5869 against verified region 1200- 5869 Test read # 8 ident 48793 949- 5629 against verified region 1200- 5869 - CANDIDATE hangs -110 -5289 - SAVED Test read # 9 ident 474002 982- 5389 against verified region 1200- 5869 - CANDIDATE hangs -147 -5591 Test read # 11 ident 510214 1057- 4833 against verified region 1200- 5869 - CANDIDATE hangs 8710 2596 Test read # 15 ident 610332 1137- 8004 against verified region 1200- 5869 Test read # 20 ident 238564 1217- 3547 against verified region 1200- 5869 - CANDIDATE hangs -144 -7664 Test read # 22 ident 531680 1244- 8700 against verified region 1200- 5869 Test read # 25 ident 2964 1261- 3109 against verified region 1200- 5869 - CANDIDATE hangs -104 -8110 Test read # 26 ident 317323 1263- 3321 against verified region 1200- 5869 - CANDIDATE hangs -142 -7930 Test read # 29 ident 290596 1295- 2959 against verified region 1200- 5869 - CANDIDATE hangs -142 -8321 Test read # 30 ident 612589 1313- 3752 against verified region 1200- 5869 - CANDIDATE hangs -145 -7557 Test read # 34 ident 304277 1420- 5442 against verified region 1200- 5869 - CANDIDATE hangs -96 -5917 Found appropriate intersecting read. createUnitigs()-- read 103476 place 9 edgeTo tig 113085 reads # 1 317324- 304277 verified 1200- 5869 position 1200- 11049 covered 0- 4760 BREAK at pos 5629 read 48793 isLow 0 sim 1.0000 Scan reads from #76 to #161 for low coordinate in verified region 13677-16987 Test read # 76 ident 399587 4128- 12615 against verified region 13677- 16987 Test read # 77 ident 116489 4307- 10231 against verified region 13677- 16987 Test read # 78 ident 116491 4310- 9827 against verified region 13677- 16987 Test read # 79 ident 709543 4322- 10022 against verified region 13677- 16987 Test read # 81 ident 116490 4355- 11143 against verified region 13677- 16987 Test read # 82 ident 355513 4430- 11460 against verified region 13677- 16987 Test read # 85 ident 434620 4790- 6039 against verified region 13677- 16987 Test read # 91 ident 637670 6495- 13569 against verified region 13677- 16987 Test read # 94 ident 529311 6575- 14034 against verified region 13677- 16987 Test read # 95 ident 529310 6579- 14036 against verified region 13677- 16987 Test read # 97 ident 529309 6633- 14048 against verified region 13677- 16987 Test read # 98 ident 637673 6787- 13627 against verified region 13677- 16987 Test read # 111 ident 254669 7627- 14830 against verified region 13677- 16987 Test read # 113 ident 497405 7813- 16046 against verified region 13677- 16987 Test read # 117 ident 147780 8967- 15649 against verified region 13677- 16987 Test read # 118 ident 660740 9044- 15914 against verified region 13677- 16987 Test read # 120 ident 715355 9574- 15394 against verified region 13677- 16987 Test read # 122 ident 291186 9805- 15129 against verified region 13677- 16987 Test read # 126 ident 529308 10342- 14000 against verified region 13677- 16987 Test read # 128 ident 637672 10346- 13604 against verified region 13677- 16987 Test read # 130 ident 380790 10355- 16987 against verified region 13677- 16987 Test read # 133 ident 637669 10410- 13606 against verified region 13677- 16987 Test read # 134 ident 118972 10411- 16954 against verified region 13677- 16987 Test read # 137 ident 715356 10504- 13577 against verified region 13677- 16987 Test read # 139 ident 45642 10547- 16188 against verified region 13677- 16987 Test read # 142 ident 408730 10565- 16564 against verified region 13677- 16987 Test read # 144 ident 408726 10568- 16574 against verified region 13677- 16987 Test read # 145 ident 408724 10595- 16615 against verified region 13677- 16987 Test read # 147 ident 408728 10611- 16632 against verified region 13677- 16987 Test read # 148 ident 408727 10618- 16622 against verified region 13677- 16987 Test read # 149 ident 408729 10621- 16609 against verified region 13677- 16987 Test read # 150 ident 408725 10622- 16644 against verified region 13677- 16987 Test read # 151 ident 528900 10682- 16868 against verified region 13677- 16987 Test read # 152 ident 589781 10710- 14477 against verified region 13677- 16987 Test read # 153 ident 358377 10765- 16950 against verified region 13677- 16987 Test read # 155 ident 528901 11248- 16805 against verified region 13677- 16987 Test read # 158 ident 409128 13150- 15255 against verified region 13677- 16987 Test read # 159 ident 492174 13388- 15207 against verified region 13677- 16987 Test read # 160 ident 635013 13761- 16981 against verified region 13677- 16987 - CANDIDATE hangs 4752 -1882 Test read # 161 ident 492172 13974- 15075 against verified region 13677- 16987 - CANDIDATE hangs 8935 207 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 10 edgeTo tig 113085 reads # 76 399587- 492172 verified 16987- 13677 position 23537- 13677 covered 4752- 9831 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #30 for high coordinate in verified region 0-3324 Test read # 0 ident 98427 0- 8640 against verified region 0- 3324 Test read # 1 ident 53185 118- 7575 against verified region 0- 3324 Test read # 2 ident 53184 147- 7946 against verified region 0- 3324 Test read # 3 ident 132715 170- 9606 against verified region 0- 3324 Test read # 4 ident 697205 593- 8126 against verified region 0- 3324 Test read # 5 ident 697206 623- 8148 against verified region 0- 3324 Test read # 6 ident 697204 688- 8123 against verified region 0- 3324 Test read # 8 ident 255475 1190- 8171 against verified region 0- 3324 Test read # 9 ident 255474 1215- 8158 against verified region 0- 3324 Test read # 11 ident 157204 1404- 8273 against verified region 0- 3324 Test read # 12 ident 157205 1412- 8278 against verified region 0- 3324 Test read # 13 ident 421121 1583- 10055 against verified region 0- 3324 Test read # 14 ident 83683 1679- 5349 against verified region 0- 3324 Test read # 15 ident 421122 1721- 10047 against verified region 0- 3324 Test read # 17 ident 24956 1935- 10706 against verified region 0- 3324 Test read # 18 ident 471278 2127- 10228 against verified region 0- 3324 Test read # 20 ident 716807 2416- 6603 against verified region 0- 3324 Test read # 22 ident 53183 2697- 7969 against verified region 0- 3324 Test read # 27 ident 368562 3154- 9597 against verified region 0- 3324 Test read # 28 ident 260831 3205- 9439 against verified region 0- 3324 Test read # 29 ident 610474 3236- 7877 against verified region 0- 3324 Test read # 30 ident 474453 3243- 7587 against verified region 0- 3324 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 11 edgeTo tig 113116 reads # 0 98427- 474453 verified 0- 3324 position -6602- 3324 covered 6162- 9831 EXPECTED_5' NO_OVERLAPS Scan reads from #36 to #113 for low coordinate in verified region 11837-20109 Test read # 36 ident 119745 4456- 13122 against verified region 11837- 20109 Test read # 39 ident 550563 4720- 16710 against verified region 11837- 20109 Test read # 45 ident 690271 5388- 12149 against verified region 11837- 20109 Test read # 49 ident 316448 5861- 13901 against verified region 11837- 20109 Test read # 50 ident 316452 5889- 13638 against verified region 11837- 20109 Test read # 52 ident 220511 5931- 13704 against verified region 11837- 20109 Test read # 56 ident 660738 6879- 14774 against verified region 11837- 20109 Test read # 57 ident 77116 6951- 13073 against verified region 11837- 20109 Test read # 60 ident 185697 7556- 12428 against verified region 11837- 20109 Test read # 61 ident 595292 8269- 12161 against verified region 11837- 20109 Test read # 62 ident 615987 8469- 19347 against verified region 11837- 20109 Test read # 63 ident 46838 8661- 16010 against verified region 11837- 20109 Test read # 64 ident 651860 8957- 13896 against verified region 11837- 20109 Test read # 66 ident 448802 9008- 14414 against verified region 11837- 20109 Test read # 68 ident 401041 9060- 16450 against verified region 11837- 20109 Test read # 72 ident 550564 9359- 16420 against verified region 11837- 20109 Test read # 73 ident 679240 9575- 17670 against verified region 11837- 20109 Test read # 76 ident 210018 10096- 14399 against verified region 11837- 20109 Test read # 78 ident 20613 10312- 13101 against verified region 11837- 20109 Test read # 79 ident 169903 10334- 18002 against verified region 11837- 20109 Test read # 80 ident 220512 10341- 13562 against verified region 11837- 20109 Test read # 81 ident 273845 10362- 14193 against verified region 11837- 20109 Test read # 82 ident 169902 10807- 18323 against verified region 11837- 20109 Test read # 83 ident 679143 10818- 19535 against verified region 11837- 20109 Test read # 85 ident 582658 11148- 17756 against verified region 11837- 20109 Test read # 86 ident 685503 11307- 17295 against verified region 11837- 20109 Test read # 87 ident 395689 11415- 13839 against verified region 11837- 20109 Test read # 88 ident 15446 11438- 18237 against verified region 11837- 20109 Test read # 89 ident 696500 11468- 16996 against verified region 11837- 20109 Test read # 90 ident 582657 11714- 17875 against verified region 11837- 20109 Test read # 91 ident 525260 12097- 20012 against verified region 11837- 20109 - CANDIDATE hangs 2684 648 Test read # 92 ident 136026 12120- 17995 against verified region 11837- 20109 - CANDIDATE hangs -147 -4138 Test read # 93 ident 510209 12224- 16174 against verified region 11837- 20109 - CANDIDATE hangs 8627 2666 Test read # 94 ident 516225 12240- 14474 against verified region 11837- 20109 - CANDIDATE hangs 7948 293 Test read # 96 ident 218088 12428- 20249 against verified region 11837- 20109 - CANDIDATE hangs -140 -2176 - SAVED Test read # 101 ident 169900 12937- 17487 against verified region 11837- 20109 - CANDIDATE hangs 4012 -1316 Test read # 102 ident 461778 12940- 16771 against verified region 11837- 20109 - CANDIDATE hangs 6523 470 Test read # 104 ident 596134 13034- 16707 against verified region 11837- 20109 - CANDIDATE hangs 3544 -2708 Test read # 106 ident 334354 13086- 18872 against verified region 11837- 20109 - CANDIDATE hangs -137 -4192 Test read # 109 ident 525261 13477- 17269 against verified region 11837- 20109 - CANDIDATE hangs 6463 343 Test read # 110 ident 101415 13586- 17296 against verified region 11837- 20109 - CANDIDATE hangs 6027 -150 Test read # 112 ident 699099 13680- 18740 against verified region 11837- 20109 - CANDIDATE hangs -138 -4920 Test read # 113 ident 1777 13720- 15572 against verified region 11837- 20109 - CANDIDATE hangs 8678 668 Found appropriate intersecting read. createUnitigs()-- read 103476 place 12 edgeTo tig 113116 reads # 36 119745- 1777 verified 20109- 11837 position 21758- 11837 covered 0- 9831 BREAK at pos 12428 read 218088 isLow 1 sim 0.9079 Scan reads from #0 to #2 for low coordinate in verified region 0-7817 Test read # 0 ident 505572 0- 14199 against verified region 0- 7817 Test read # 1 ident 505574 126- 14320 against verified region 0- 7817 - CANDIDATE hangs -6474 -2166 - SAVED Test read # 2 ident 505573 164- 14166 against verified region 0- 7817 - CANDIDATE hangs -6305 -2181 Found appropriate intersecting read. createUnitigs()-- read 103476 place 13 edgeTo tig 113117 reads # 0 505572- 505573 verified 7817- 0 position 7817- -2071 covered 0- 7675 NOT_SIMILAR Scan reads from #2 to #2 for low coordinate in verified region 7389-9170 Test read # 2 ident 579786 1295- 9170 against verified region 7389- 9170 Failed to find appropriate intersecting read. createUnitigs()-- read 103476 place 14 edgeTo tig 114131 reads # 2 579786- 579786 verified 9170- 7389 position 17238- 7389 covered 8068- 9831 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 291 len 46762 first read 105234 with 1 placements - last read 718918 with 1 placements createUnitigs()-- read 105234 place 0 edgeTo tig 291 reads # 1 105231- 105233 verified 1- 4874 position 1- 4874 covered 1- 4877 SELF EXPECTED_5' createUnitigs()-- read 718918 place 0 edgeTo tig 291 reads # 59 585191- 99704 verified 39798- 46743 position 39798- 46743 covered 0- 6956 SELF createUnitigs()-- tig 297 len 25527 first read 383476 with 2 placements - last read 532080 with 3 placements Scan reads from #23 to #48 for high coordinate in verified region 14560-20358 Test read # 23 ident 612640 9955- 18443 against verified region 14560- 20358 - CANDIDATE hangs 4956 4600 - SAVED Test read # 24 ident 242383 10622- 17771 against verified region 14560- 20358 - CANDIDATE hangs 5647 3938 Test read # 27 ident 612641 11547- 18422 against verified region 14560- 20358 - CANDIDATE hangs 4980 3007 Test read # 30 ident 3247 12553- 18117 against verified region 14560- 20358 - CANDIDATE hangs 5295 1994 Test read # 31 ident 165222 12697- 18481 against verified region 14560- 20358 - CANDIDATE hangs 4920 1866 - SAVED Test read # 33 ident 244984 13157- 18088 against verified region 14560- 20358 - CANDIDATE hangs 5304 1414 Test read # 34 ident 165221 13202- 19708 against verified region 14560- 20358 - CANDIDATE hangs 3700 1358 - SAVED Test read # 35 ident 206153 13217- 19284 against verified region 14560- 20358 - CANDIDATE hangs 4111 1356 Test read # 36 ident 244986 13381- 18119 against verified region 14560- 20358 - CANDIDATE hangs 5273 1184 Test read # 40 ident 393248 13661- 20146 against verified region 14560- 20358 - CANDIDATE hangs 3273 892 - SAVED Test read # 41 ident 23478 14026- 19480 against verified region 14560- 20358 - CANDIDATE hangs 3940 533 Test read # 45 ident 168088 14534- 19602 against verified region 14560- 20358 - CANDIDATE hangs 3806 26 Test read # 46 ident 168087 14590- 20358 against verified region 14560- 20358 Test read # 47 ident 210850 14718- 19256 against verified region 14560- 20358 - CANDIDATE hangs 4161 -163 Test read # 48 ident 91467 14859- 19505 against verified region 14560- 20358 - CANDIDATE hangs 3909 -294 Found appropriate intersecting read. createUnitigs()-- read 383476 place 0 edgeTo tig 35 reads # 23 612640- 91467 verified 20358- 14560 position 23407- 14560 covered 3061- 8836 BREAK at pos 20146 read 393248 isLow 0 sim 1.0000 createUnitigs()-- read 383476 place 1 edgeTo tig 297 reads # 1 176660- 566104 verified 8888- 39 position 8888- 19 covered 0- 8824 SELF EXPECTED_3' createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 532080 place 0 edgeTo tig 297 reads # 28 706345- 160657 verified 25428- 18298 position 25520- 18298 covered 59- 7173 SELF EXPECTED_5' Scan reads from #0 to #10 for high coordinate in verified region 0-2767 Test read # 0 ident 91291 0- 6043 against verified region 0- 2767 Test read # 1 ident 91289 9- 6609 against verified region 0- 2767 Test read # 2 ident 91288 14- 6618 against verified region 0- 2767 Test read # 3 ident 91290 17- 6614 against verified region 0- 2767 Test read # 4 ident 391739 331- 5313 against verified region 0- 2767 Test read # 5 ident 91287 335- 6620 against verified region 0- 2767 Test read # 6 ident 158061 389- 4257 against verified region 0- 2767 Test read # 7 ident 627718 577- 5163 against verified region 0- 2767 Test read # 8 ident 91286 619- 6614 against verified region 0- 2767 Test read # 9 ident 268738 1425- 4552 against verified region 0- 2767 Test read # 10 ident 91292 1553- 6535 against verified region 0- 2767 Failed to find appropriate intersecting read. createUnitigs()-- read 532080 place 1 edgeTo tig 2675 reads # 0 91291- 91292 verified 0- 2767 position -4408- 2767 covered 4407- 7173 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #5 for high coordinate in verified region 0-2387 Test read # 0 ident 204970 0- 8296 against verified region 0- 2387 Test read # 1 ident 495539 15- 9453 against verified region 0- 2387 Test read # 2 ident 614860 125- 6434 against verified region 0- 2387 Test read # 3 ident 498787 1140- 7886 against verified region 0- 2387 Test read # 4 ident 498788 1146- 7877 against verified region 0- 2387 Test read # 5 ident 649243 1834- 10128 against verified region 0- 2387 Failed to find appropriate intersecting read. createUnitigs()-- read 532080 place 2 edgeTo tig 113669 reads # 0 204970- 649243 verified 0- 2387 position -4796- 2387 covered 4801- 7173 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- tig 298 len 21188 first read 480192 with 1 placements - last read 180379 with 1 placements createUnitigs()-- read 480192 place 0 edgeTo tig 298 reads # 1 157710- 232421 verified 141- 4751 position 4- 4751 covered 145- 4725 SELF EXPECTED_5' createUnitigs()-- read 180379 place 0 edgeTo tig 298 reads # 25 562082- 180380 verified 15751- 21016 position 15751- 21169 covered 0- 5222 SELF EXPECTED_3' createUnitigs()-- tig 302 len 22038 first read 70938 with 4 placements - last read 202582 with 2 placements Scan reads from #15 to #52 for high coordinate in verified region 17064-20404 Test read # 15 ident 404540 5968- 20404 against verified region 17064- 20404 Test read # 28 ident 682419 10355- 19084 against verified region 17064- 20404 - CANDIDATE hangs -6705 -4808 - SAVED Test read # 31 ident 611126 12663- 18874 against verified region 17064- 20404 - CANDIDATE hangs -4389 -4963 Test read # 32 ident 611128 12673- 18896 against verified region 17064- 20404 - CANDIDATE hangs -4376 -4937 Test read # 33 ident 324400 12887- 18829 against verified region 17064- 20404 - CANDIDATE hangs -4189 -5007 Test read # 34 ident 304498 13181- 19196 against verified region 17064- 20404 - CANDIDATE hangs -3892 -4637 - SAVED Test read # 35 ident 304499 13255- 19197 against verified region 17064- 20404 - CANDIDATE hangs -3819 -4637 - SAVED Test read # 36 ident 527954 13385- 18896 against verified region 17064- 20404 - CANDIDATE hangs -3689 -4936 Test read # 38 ident 386083 13600- 19660 against verified region 17064- 20404 - CANDIDATE hangs -3466 -4162 - SAVED Test read # 39 ident 348696 13606- 20206 against verified region 17064- 20404 - CANDIDATE hangs -3463 -3620 - SAVED Test read # 40 ident 386084 13606- 19640 against verified region 17064- 20404 - CANDIDATE hangs -3467 -4178 Test read # 41 ident 348695 13619- 20226 against verified region 17064- 20404 - CANDIDATE hangs -3466 -3621 - SAVED Test read # 42 ident 348697 13912- 20208 against verified region 17064- 20404 - CANDIDATE hangs -3161 -3621 Test read # 44 ident 239625 14213- 17822 against verified region 17064- 20404 - CANDIDATE hangs -2843 -6016 Test read # 45 ident 469624 14259- 19652 against verified region 17064- 20404 - CANDIDATE hangs -2814 -4167 Test read # 48 ident 172160 14557- 19844 against verified region 17064- 20404 - CANDIDATE hangs -2523 -3979 Test read # 49 ident 569254 14674- 17883 against verified region 17064- 20404 - CANDIDATE hangs -2399 -5951 Test read # 50 ident 569252 14876- 17798 against verified region 17064- 20404 - CANDIDATE hangs -2217 -6048 Test read # 51 ident 171868 14957- 19376 against verified region 17064- 20404 - CANDIDATE hangs -2124 -4449 Test read # 52 ident 624212 14971- 19170 against verified region 17064- 20404 - CANDIDATE hangs -2109 -4659 Found appropriate intersecting read. createUnitigs()-- read 70938 place 0 edgeTo tig 15 reads # 15 404540- 624212 verified 17064- 20404 position 17064- 23827 covered 0- 3450 BREAK at pos 20226 read 348695 isLow 0 sim 1.0000 Scan reads from #37 to #38 for low coordinate in verified region 15588-19454 Test read # 37 ident 75978 15588- 20194 against verified region 15588- 19454 Test read # 38 ident 356130 15618- 20461 against verified region 15588- 19454 - CANDIDATE hangs -1005 -2880 - SAVED Found appropriate intersecting read. createUnitigs()-- read 70938 place 1 edgeTo tig 228 reads # 37 75978- 356130 verified 19454- 15588 position 19454- 12737 covered 0- 3898 BREAK at pos 15618 read 356130 isLow 1 sim 1.0000 createUnitigs()-- read 70938 place 2 edgeTo tig 302 reads # 1 717808- 646613 verified 4042- 6798 position 9- 6798 covered 4044- 6750 SELF EXPECTED_5' Scan reads from #22 to #25 for low coordinate in verified region 4877-6243 Test read # 22 ident 52326 4877- 12986 against verified region 4877- 6243 Test read # 23 ident 52325 4903- 12949 against verified region 4877- 6243 - CANDIDATE hangs -6717 -5477 - SAVED Test read # 24 ident 101075 5295- 13472 against verified region 4877- 6243 - CANDIDATE hangs -7231 -5878 Test read # 25 ident 101074 5304- 15889 against verified region 4877- 6243 - CANDIDATE hangs -9618 -5901 Found appropriate intersecting read. createUnitigs()-- read 70938 place 3 edgeTo tig 582080 reads # 22 52326- 101074 verified 6243- 4877 position 6243- -584 covered 0- 1288 BREAK at pos 4903 read 52325 isLow 1 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- read 202582 place 0 edgeTo tig 302 reads # 13 377866- 279179 verified 13525- 21922 position 13525- 22031 covered 0- 8335 SELF EXPECTED_3' Scan reads from #1 to #1 for low coordinate in verified region 2509-3146 Test read # 1 ident 542098 0- 3146 against verified region 2509- 3146 Failed to find appropriate intersecting read. createUnitigs()-- read 202582 place 1 edgeTo tig 43155 reads # 1 542098- 542098 verified 2509- 3146 position 2509- 11003 covered 0- 603 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- tig 306 len 23190 first read 241100 with 4 placements - last read 606581 with 1 placements createUnitigs()-- read 241100 place 0 edgeTo tig 306 reads # 1 500223- 423644 verified 14998- 165 position 14998- 104 covered 0- 14591 SELF EXPECTED_3' Scan reads from #10 to #25 for low coordinate in verified region 11463-18843 Test read # 10 ident 44895 11463- 18404 against verified region 11463- 18843 Test read # 11 ident 365738 11467- 18843 against verified region 11463- 18843 - CANDIDATE hangs 2115 -5343 Test read # 12 ident 372548 11478- 16812 against verified region 11463- 18843 - CANDIDATE hangs 2122 -7373 Test read # 13 ident 237463 11482- 18634 against verified region 11463- 18843 - CANDIDATE hangs 2125 -5562 Test read # 14 ident 464957 11485- 14887 against verified region 11463- 18843 - CANDIDATE hangs 2125 -9286 Test read # 15 ident 374678 11487- 16638 against verified region 11463- 18843 - CANDIDATE hangs 2128 -7546 Test read # 16 ident 535740 11487- 16235 against verified region 11463- 18843 - CANDIDATE hangs 2129 -7950 Test read # 17 ident 541972 11488- 18071 against verified region 11463- 18843 - CANDIDATE hangs 2128 -6119 Test read # 18 ident 208876 11488- 17616 against verified region 11463- 18843 - CANDIDATE hangs 2126 -6562 Test read # 19 ident 675544 11488- 17605 against verified region 11463- 18843 - CANDIDATE hangs 2129 -6587 Test read # 20 ident 423395 11489- 17801 against verified region 11463- 18843 - CANDIDATE hangs 2128 -6383 Test read # 21 ident 423394 11489- 17789 against verified region 11463- 18843 - CANDIDATE hangs 2129 -6400 Test read # 22 ident 637347 11491- 16246 against verified region 11463- 18843 - CANDIDATE hangs 2130 -7936 Test read # 23 ident 372551 11492- 16862 against verified region 11463- 18843 - CANDIDATE hangs 2132 -7323 Test read # 24 ident 19777 11493- 16984 against verified region 11463- 18843 - CANDIDATE hangs 2137 -7209 Test read # 25 ident 538403 11494- 15703 against verified region 11463- 18843 - CANDIDATE hangs 2133 -8473 Failed to find appropriate intersecting read. createUnitigs()-- read 241100 place 1 edgeTo tig 471 reads # 10 44895- 538403 verified 11463- 18843 position 9358- 24186 covered 2115- 9447 EXPECTED_3' NO_OVERLAPS Scan reads from #1 to #9 for high coordinate in verified region 2284-9580 Test read # 1 ident 365739 2284- 9580 against verified region 2284- 9580 Test read # 2 ident 337037 2289- 9567 against verified region 2284- 9580 - CANDIDATE hangs 2121 -5384 Test read # 3 ident 572600 2800- 8360 against verified region 2284- 9580 - CANDIDATE hangs 3341 -5896 Test read # 4 ident 302844 3163- 7898 against verified region 2284- 9580 - CANDIDATE hangs 3806 -6255 Test read # 5 ident 454337 4099- 8429 against verified region 2284- 9580 - CANDIDATE hangs 3272 -7192 Test read # 6 ident 372552 4276- 9366 against verified region 2284- 9580 - CANDIDATE hangs 2338 -7374 Test read # 8 ident 204969 4853- 9554 against verified region 2284- 9580 - CANDIDATE hangs 2132 -7950 Test read # 9 ident 105463 5548- 9436 against verified region 2284- 9580 - CANDIDATE hangs 2269 -8644 Failed to find appropriate intersecting read. createUnitigs()-- read 241100 place 2 edgeTo tig 471 reads # 1 365739- 105463 verified 9580- 2284 position 11698- -3092 covered 2117- 9432 EXPECTED_3' NO_OVERLAPS Scan reads from #61 to #305 for high coordinate in verified region 20634-33446 Test read # 61 ident 636847 11690- 21661 against verified region 20634- 33446 - CANDIDATE hangs 13824 8839 - SAVED Test read # 62 ident 636848 11695- 21664 against verified region 20634- 33446 - CANDIDATE hangs 13820 8833 - SAVED Test read # 66 ident 331026 11839- 21876 against verified region 20634- 33446 - CANDIDATE hangs 13603 8682 - SAVED Test read # 70 ident 636846 11988- 21659 against verified region 20634- 33446 - CANDIDATE hangs 13823 8539 Test read # 74 ident 287151 12246- 21406 against verified region 20634- 33446 - CANDIDATE hangs 14071 8282 Test read # 84 ident 279067 12844- 21445 against verified region 20634- 33446 - CANDIDATE hangs 14039 7694 Test read # 91 ident 171865 13089- 21459 against verified region 20634- 33446 - CANDIDATE hangs 14035 7461 Test read # 92 ident 171866 13140- 21671 against verified region 20634- 33446 - CANDIDATE hangs 13809 7389 Test read # 94 ident 52913 13249- 22268 against verified region 20634- 33446 - CANDIDATE hangs 13216 7289 - SAVED Test read # 95 ident 250558 13283- 21690 against verified region 20634- 33446 - CANDIDATE hangs 13789 7253 Test read # 96 ident 250559 13289- 21656 against verified region 20634- 33446 - CANDIDATE hangs 13828 7254 Test read # 97 ident 530763 13371- 21661 against verified region 20634- 33446 - CANDIDATE hangs 13813 7153 Test read # 104 ident 58929 13812- 22397 against verified region 20634- 33446 - CANDIDATE hangs 13086 6732 - SAVED Test read # 105 ident 58928 13832- 22401 against verified region 20634- 33446 - CANDIDATE hangs 13082 6712 - SAVED Test read # 108 ident 660476 14054- 22968 against verified region 20634- 33446 - CANDIDATE hangs 12523 6496 - SAVED Test read # 117 ident 642252 14425- 27879 against verified region 20634- 33446 - CANDIDATE hangs 7629 6127 - SAVED Test read # 121 ident 717531 14582- 21946 against verified region 20634- 33446 - CANDIDATE hangs 13530 5969 Test read # 122 ident 484497 14596- 21728 against verified region 20634- 33446 - CANDIDATE hangs 13763 5969 Test read # 123 ident 710145 14656- 27035 against verified region 20634- 33446 - CANDIDATE hangs 8471 5905 Test read # 126 ident 710146 14764- 27029 against verified region 20634- 33446 - CANDIDATE hangs 8471 5800 Test read # 127 ident 582636 14874- 22784 against verified region 20634- 33446 - CANDIDATE hangs 12707 5693 Test read # 129 ident 582635 14881- 23357 against verified region 20634- 33446 - CANDIDATE hangs 12134 5679 Test read # 130 ident 444936 14897- 22155 against verified region 20634- 33446 - CANDIDATE hangs 13311 5639 Test read # 131 ident 173125 14965- 21255 against verified region 20634- 33446 - CANDIDATE hangs 14219 5596 Test read # 133 ident 45895 15000- 25237 against verified region 20634- 33446 - CANDIDATE hangs 10274 5577 Test read # 136 ident 84103 15143- 23278 against verified region 20634- 33446 - CANDIDATE hangs 12214 5428 Test read # 137 ident 643146 15198- 22858 against verified region 20634- 33446 - CANDIDATE hangs 12634 5380 Test read # 138 ident 623715 15203- 23205 against verified region 20634- 33446 - CANDIDATE hangs 12288 5377 Test read # 139 ident 643144 15207- 22863 against verified region 20634- 33446 - CANDIDATE hangs 12631 5366 Test read # 140 ident 643143 15213- 22868 against verified region 20634- 33446 - CANDIDATE hangs 12624 5357 Test read # 141 ident 643145 15213- 22864 against verified region 20634- 33446 - CANDIDATE hangs 12629 5361 Test read # 142 ident 308565 15218- 25961 against verified region 20634- 33446 - CANDIDATE hangs 9553 5356 Test read # 143 ident 97710 15298- 21930 against verified region 20634- 33446 - CANDIDATE hangs 13551 5275 Test read # 144 ident 97709 15303- 21939 against verified region 20634- 33446 - CANDIDATE hangs 13539 5272 Test read # 145 ident 97708 15307- 21941 against verified region 20634- 33446 - CANDIDATE hangs 13540 5267 Test read # 146 ident 173124 15322- 21297 against verified region 20634- 33446 - CANDIDATE hangs 14178 5241 Test read # 148 ident 666786 15405- 25242 against verified region 20634- 33446 - CANDIDATE hangs 10270 5174 Test read # 149 ident 117912 15410- 24698 against verified region 20634- 33446 - CANDIDATE hangs 10800 5172 Test read # 150 ident 146279 15447- 23066 against verified region 20634- 33446 - CANDIDATE hangs 12416 5133 Test read # 153 ident 273305 15541- 25024 against verified region 20634- 33446 - CANDIDATE hangs 10487 5034 Test read # 155 ident 544719 15618- 24055 against verified region 20634- 33446 - CANDIDATE hangs 11434 4967 Test read # 156 ident 82494 15638- 21925 against verified region 20634- 33446 - CANDIDATE hangs 13561 4948 Test read # 157 ident 250557 15712- 21702 against verified region 20634- 33446 - CANDIDATE hangs 13780 4869 Test read # 158 ident 472031 15743- 23666 against verified region 20634- 33446 - CANDIDATE hangs 11828 4846 Test read # 159 ident 643147 15801- 22862 against verified region 20634- 33446 - CANDIDATE hangs 12632 4786 Test read # 161 ident 654852 15898- 23298 against verified region 20634- 33446 - CANDIDATE hangs 12194 4692 Test read # 162 ident 636849 15979- 21664 against verified region 20634- 33446 - CANDIDATE hangs 13822 4616 Test read # 164 ident 203277 15995- 22747 against verified region 20634- 33446 - CANDIDATE hangs 12746 4593 Test read # 165 ident 203276 16052- 21411 against verified region 20634- 33446 - CANDIDATE hangs 14071 4554 Test read # 166 ident 676063 16072- 22391 against verified region 20634- 33446 - CANDIDATE hangs 13082 4518 Test read # 167 ident 163167 16188- 26807 against verified region 20634- 33446 - CANDIDATE hangs 8711 4405 Test read # 174 ident 645883 16489- 28838 against verified region 20634- 33446 - CANDIDATE hangs 6672 4115 - SAVED Test read # 175 ident 282084 16504- 25412 against verified region 20634- 33446 - CANDIDATE hangs 10095 4108 Test read # 176 ident 282085 16554- 25393 against verified region 20634- 33446 - CANDIDATE hangs 10114 4057 Test read # 177 ident 150534 16565- 25354 against verified region 20634- 33446 - CANDIDATE hangs 10153 4045 Test read # 178 ident 342525 16616- 25753 against verified region 20634- 33446 - CANDIDATE hangs 9751 3994 Test read # 179 ident 194006 16667- 26587 against verified region 20634- 33446 - CANDIDATE hangs 8923 3938 Test read # 180 ident 461426 16689- 26174 against verified region 20634- 33446 - CANDIDATE hangs 9330 3910 Test read # 181 ident 150535 16970- 25392 against verified region 20634- 33446 - CANDIDATE hangs 10137 3642 Test read # 182 ident 663999 17058- 24225 against verified region 20634- 33446 - CANDIDATE hangs 11268 3552 Test read # 183 ident 374722 17063- 26124 against verified region 20634- 33446 - CANDIDATE hangs 9391 3551 Test read # 184 ident 425153 17103- 22622 against verified region 20634- 33446 - CANDIDATE hangs 12863 3509 Test read # 185 ident 430715 17154- 24064 against verified region 20634- 33446 - CANDIDATE hangs 11415 3457 Test read # 187 ident 389038 17210- 23568 against verified region 20634- 33446 - CANDIDATE hangs 11943 3416 Test read # 188 ident 309708 17229- 22219 against verified region 20634- 33446 - CANDIDATE hangs 13268 3389 Test read # 189 ident 159298 17240- 29635 against verified region 20634- 33446 - CANDIDATE hangs 5879 3366 - SAVED Test read # 190 ident 667515 17345- 25502 against verified region 20634- 33446 - CANDIDATE hangs 10011 3270 Test read # 191 ident 667516 17356- 25507 against verified region 20634- 33446 - CANDIDATE hangs 10014 3286 Test read # 192 ident 667517 17390- 25486 against verified region 20634- 33446 - CANDIDATE hangs 10025 3229 Test read # 194 ident 83280 17461- 27161 against verified region 20634- 33446 - CANDIDATE hangs 8350 3161 Test read # 195 ident 682705 17469- 28232 against verified region 20634- 33446 - CANDIDATE hangs 7275 3151 Test read # 196 ident 245683 17505- 23046 against verified region 20634- 33446 - CANDIDATE hangs 12448 3094 Test read # 197 ident 401085 17575- 24458 against verified region 20634- 33446 - CANDIDATE hangs 11047 3045 Test read # 199 ident 513181 17583- 24292 against verified region 20634- 33446 - CANDIDATE hangs 11205 3036 Test read # 200 ident 131718 17607- 27437 against verified region 20634- 33446 - CANDIDATE hangs 8071 3012 Test read # 201 ident 131719 17624- 26647 against verified region 20634- 33446 - CANDIDATE hangs 8861 2998 Test read # 202 ident 131717 17632- 27404 against verified region 20634- 33446 - CANDIDATE hangs 8106 2995 Test read # 204 ident 698702 17669- 27373 against verified region 20634- 33446 - CANDIDATE hangs 8137 2949 Test read # 205 ident 13732 17680- 23582 against verified region 20634- 33446 - CANDIDATE hangs 11916 2935 Test read # 206 ident 50900 17689- 25813 against verified region 20634- 33446 - CANDIDATE hangs 9697 2933 Test read # 207 ident 13733 17703- 22686 against verified region 20634- 33446 - CANDIDATE hangs 12796 2911 Test read # 208 ident 687492 17742- 22381 against verified region 20634- 33446 - CANDIDATE hangs 13085 2877 Test read # 209 ident 348416 17911- 31526 against verified region 20634- 33446 - CANDIDATE hangs 3988 2713 - SAVED Test read # 210 ident 138109 18049- 25031 against verified region 20634- 33446 - CANDIDATE hangs 10468 2581 Test read # 212 ident 313194 18190- 21806 against verified region 20634- 33446 - CANDIDATE hangs 13673 2453 Test read # 213 ident 359909 18204- 30685 against verified region 20634- 33446 - CANDIDATE hangs 4814 2433 Test read # 214 ident 633695 18257- 23773 against verified region 20634- 33446 - CANDIDATE hangs 11730 2381 Test read # 217 ident 327462 18561- 24023 against verified region 20634- 33446 - CANDIDATE hangs 11465 2081 Test read # 219 ident 489037 18672- 25526 against verified region 20634- 33446 - CANDIDATE hangs 9982 1971 Test read # 220 ident 489036 18673- 25530 against verified region 20634- 33446 - CANDIDATE hangs 9979 1969 Test read # 221 ident 376342 18676- 25282 against verified region 20634- 33446 - CANDIDATE hangs 10215 1960 Test read # 222 ident 489035 18688- 22158 against verified region 20634- 33446 - CANDIDATE hangs 13326 1946 Test read # 223 ident 489039 18692- 25522 against verified region 20634- 33446 - CANDIDATE hangs 9985 1951 Test read # 224 ident 489038 18713- 25526 against verified region 20634- 33446 - CANDIDATE hangs 9979 1930 Test read # 226 ident 591921 18734- 29357 against verified region 20634- 33446 - CANDIDATE hangs 6167 1910 Test read # 227 ident 489040 18778- 22269 against verified region 20634- 33446 - CANDIDATE hangs 13212 1859 Test read # 229 ident 484638 18795- 21652 against verified region 20634- 33446 - CANDIDATE hangs 13836 1855 Test read # 230 ident 156595 18835- 33390 against verified region 20634- 33446 - CANDIDATE hangs 2126 1807 - SAVED Test read # 231 ident 116512 18899- 26433 against verified region 20634- 33446 - CANDIDATE hangs 9077 1746 Test read # 232 ident 201686 18904- 22059 against verified region 20634- 33446 - CANDIDATE hangs 13419 1708 Test read # 233 ident 116514 18918- 26440 against verified region 20634- 33446 - CANDIDATE hangs 9066 1733 Test read # 235 ident 538797 19176- 27750 against verified region 20634- 33446 - CANDIDATE hangs 7761 1478 Test read # 236 ident 215246 19201- 25266 against verified region 20634- 33446 - CANDIDATE hangs 10236 1452 Test read # 237 ident 365817 19221- 26593 against verified region 20634- 33446 - CANDIDATE hangs 8919 1435 Test read # 238 ident 215247 19247- 25149 against verified region 20634- 33446 - CANDIDATE hangs 10347 1405 Test read # 239 ident 241713 19343- 29520 against verified region 20634- 33446 - CANDIDATE hangs 5993 1316 Test read # 240 ident 144097 19358- 31226 against verified region 20634- 33446 - CANDIDATE hangs 4285 1303 Test read # 241 ident 693336 19685- 27664 against verified region 20634- 33446 - CANDIDATE hangs 7832 985 Test read # 242 ident 601225 19737- 24531 against verified region 20634- 33446 - CANDIDATE hangs 10970 933 Test read # 244 ident 627545 19885- 31450 against verified region 20634- 33446 - CANDIDATE hangs 4063 784 Test read # 245 ident 627544 19896- 30823 against verified region 20634- 33446 - CANDIDATE hangs 4695 772 Test read # 246 ident 496202 20049- 25443 against verified region 20634- 33446 - CANDIDATE hangs 10057 625 Test read # 247 ident 51690 20080- 26362 against verified region 20634- 33446 - CANDIDATE hangs 9144 593 Test read # 248 ident 152909 20369- 29875 against verified region 20634- 33446 - CANDIDATE hangs 5638 306 Test read # 249 ident 440246 20534- 29034 against verified region 20634- 33446 - CANDIDATE hangs 6476 147 Test read # 250 ident 440247 20543- 27046 against verified region 20634- 33446 - CANDIDATE hangs 8459 137 Test read # 251 ident 220274 20617- 27787 against verified region 20634- 33446 - CANDIDATE hangs 7712 67 Test read # 252 ident 639646 20848- 27693 against verified region 20634- 33446 - CANDIDATE hangs 7819 -166 Test read # 253 ident 531481 21221- 29945 against verified region 20634- 33446 - CANDIDATE hangs 5568 -539 Test read # 254 ident 152910 21251- 29872 against verified region 20634- 33446 - CANDIDATE hangs 5638 -562 Test read # 255 ident 100939 21335- 33390 against verified region 20634- 33446 - CANDIDATE hangs 2125 -643 Test read # 256 ident 107887 21353- 33395 against verified region 20634- 33446 - CANDIDATE hangs 2127 -663 Test read # 257 ident 511949 21387- 32636 against verified region 20634- 33446 - CANDIDATE hangs 2891 -697 Test read # 258 ident 425937 21396- 30031 against verified region 20634- 33446 - CANDIDATE hangs 5491 -705 Test read # 259 ident 159297 21605- 29631 against verified region 20634- 33446 - CANDIDATE hangs 5879 -915 Test read # 260 ident 562444 21904- 30682 against verified region 20634- 33446 - CANDIDATE hangs 4828 -1208 Test read # 261 ident 372209 21962- 27869 against verified region 20634- 33446 - CANDIDATE hangs 7638 -1268 Test read # 262 ident 372211 21963- 27869 against verified region 20634- 33446 - CANDIDATE hangs 7641 -1268 Test read # 263 ident 372212 21970- 27865 against verified region 20634- 33446 - CANDIDATE hangs 7642 -1274 Test read # 264 ident 372213 21975- 27872 against verified region 20634- 33446 - CANDIDATE hangs 7638 -1281 Test read # 265 ident 177410 22255- 30833 against verified region 20634- 33446 - CANDIDATE hangs 4671 -1556 Test read # 266 ident 212352 22300- 30349 against verified region 20634- 33446 - CANDIDATE hangs 5153 -1602 Test read # 267 ident 163170 22308- 29408 against verified region 20634- 33446 - CANDIDATE hangs 6100 -1614 Test read # 268 ident 577630 22318- 29843 against verified region 20634- 33446 - CANDIDATE hangs 5670 -1624 Test read # 269 ident 577628 22320- 29835 against verified region 20634- 33446 - CANDIDATE hangs 5674 -1624 Test read # 270 ident 577629 22323- 29838 against verified region 20634- 33446 - CANDIDATE hangs 5670 -1628 Test read # 271 ident 577632 22326- 28782 against verified region 20634- 33446 - CANDIDATE hangs 6726 -1630 Test read # 272 ident 577627 22332- 29850 against verified region 20634- 33446 - CANDIDATE hangs 5659 -1637 Test read # 273 ident 577631 22349- 29826 against verified region 20634- 33446 - CANDIDATE hangs 5683 -1654 Test read # 274 ident 358527 22395- 30927 against verified region 20634- 33446 - CANDIDATE hangs 4586 -1701 Test read # 275 ident 140953 22641- 32434 against verified region 20634- 33446 - CANDIDATE hangs 3087 -1941 Test read # 276 ident 464270 22672- 28613 against verified region 20634- 33446 - CANDIDATE hangs 6894 -1974 Test read # 277 ident 214383 22757- 29564 against verified region 20634- 33446 - CANDIDATE hangs 5949 -2052 Test read # 278 ident 288010 22798- 29254 against verified region 20634- 33446 - CANDIDATE hangs 6252 -2090 Test read # 279 ident 428196 22809- 29315 against verified region 20634- 33446 - CANDIDATE hangs 6199 -2105 Test read # 280 ident 239393 22898- 33391 against verified region 20634- 33446 - CANDIDATE hangs 2128 -2191 Test read # 281 ident 81471 23513- 33402 against verified region 20634- 33446 - CANDIDATE hangs 2126 -2809 Test read # 282 ident 437763 23551- 29035 against verified region 20634- 33446 - CANDIDATE hangs 6473 -2843 Test read # 283 ident 296967 23584- 31787 against verified region 20634- 33446 - CANDIDATE hangs 3729 -2876 Test read # 284 ident 296968 23584- 29121 against verified region 20634- 33446 - CANDIDATE hangs 6387 -2877 Test read # 285 ident 196076 23736- 30516 against verified region 20634- 33446 - CANDIDATE hangs 4999 -3030 Test read # 286 ident 668413 23737- 33358 against verified region 20634- 33446 - CANDIDATE hangs 2139 -3029 Test read # 287 ident 196075 23739- 33446 against verified region 20634- 33446 Test read # 288 ident 612667 23792- 30568 against verified region 20634- 33446 - CANDIDATE hangs 4936 -3082 Test read # 289 ident 612665 23796- 30565 against verified region 20634- 33446 - CANDIDATE hangs 4936 -3083 Test read # 290 ident 612669 23812- 30566 against verified region 20634- 33446 - CANDIDATE hangs 4935 -3098 Test read # 291 ident 418554 24000- 32709 against verified region 20634- 33446 - CANDIDATE hangs 2805 -3292 Test read # 292 ident 490949 24620- 33393 against verified region 20634- 33446 - CANDIDATE hangs 2125 -3910 Test read # 293 ident 713368 24703- 33170 against verified region 20634- 33446 - CANDIDATE hangs 2355 -3993 Test read # 294 ident 649241 24742- 33263 against verified region 20634- 33446 - CANDIDATE hangs 2264 -4034 Test read # 295 ident 166044 24943- 30671 against verified region 20634- 33446 - CANDIDATE hangs 4841 -4229 Test read # 296 ident 631754 25078- 32253 against verified region 20634- 33446 - CANDIDATE hangs 3266 -4365 Test read # 297 ident 488349 25230- 31553 against verified region 20634- 33446 - CANDIDATE hangs 3987 -4518 Test read # 298 ident 122733 25293- 32798 against verified region 20634- 33446 - CANDIDATE hangs 2723 -4578 Test read # 299 ident 140829 25618- 33394 against verified region 20634- 33446 - CANDIDATE hangs 2128 -4904 Test read # 300 ident 204802 25692- 33412 against verified region 20634- 33446 - CANDIDATE hangs 2122 -4978 Test read # 301 ident 204801 25705- 33406 against verified region 20634- 33446 - CANDIDATE hangs 2122 -4991 Test read # 302 ident 204803 25717- 33396 against verified region 20634- 33446 - CANDIDATE hangs 2127 -5001 Test read # 303 ident 110629 25847- 33382 against verified region 20634- 33446 - CANDIDATE hangs 2125 -5131 Test read # 304 ident 96264 29738- 33387 against verified region 20634- 33446 - CANDIDATE hangs 2123 -9015 Test read # 305 ident 101467 29931- 33401 against verified region 20634- 33446 - CANDIDATE hangs 2117 -9210 Found appropriate intersecting read. createUnitigs()-- read 241100 place 3 edgeTo tig 113065 reads # 61 636847- 101467 verified 33446- 20634 position 35502- 20634 covered 2117- 14790 BREAK at pos 33390 read 156595 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 606581 place 0 edgeTo tig 306 reads # 185 257978- 517032 verified 16958- 23168 position 16958- 23169 covered 0- 6236 SELF createUnitigs()-- tig 315 len 21275 first read 300520 with 1 placements - last read 362937 with 1 placements createUnitigs()-- read 300520 place 0 edgeTo tig 315 reads # 1 300523- 48737 verified 5189- 15 position 5189- 15 covered 0- 5143 SELF createUnitigs()-- read 362937 place 0 edgeTo tig 315 reads # 40 532245- 532244 verified 15969- 20903 position 15969- 21275 covered 0- 4919 SELF EXPECTED_3' createUnitigs()-- tig 323 len 41139 first read 349041 with 1 placements - last read 582493 with 2 placements createUnitigs()-- read 349041 place 0 edgeTo tig 323 reads # 1 349043- 652270 verified 1- 6799 position 1- 6799 covered 0- 6737 SELF createUnitigs()-- read 582493 place 0 edgeTo tig 323 reads # 36 121753- 138849 verified 41124- 37375 position 41124- 37375 covered 24- 3703 SELF EXPECTED_5' Scan reads from #11 to #29 for low coordinate in verified region 13812-16784 Test read # 11 ident 286123 5969- 15314 against verified region 13812- 16784 Test read # 12 ident 18606 7740- 16784 against verified region 13812- 16784 Test read # 14 ident 18607 7791- 16776 against verified region 13812- 16784 Test read # 15 ident 174386 9054- 16077 against verified region 13812- 16784 Test read # 16 ident 451365 9178- 14531 against verified region 13812- 16784 Test read # 17 ident 654219 9201- 15422 against verified region 13812- 16784 Test read # 19 ident 451367 9294- 14535 against verified region 13812- 16784 Test read # 20 ident 451368 9366- 14536 against verified region 13812- 16784 Test read # 21 ident 294959 9821- 16230 against verified region 13812- 16784 Test read # 25 ident 162155 10150- 16602 against verified region 13812- 16784 Test read # 28 ident 653799 12587- 14603 against verified region 13812- 16784 Test read # 29 ident 705074 13117- 16480 against verified region 13812- 16784 Failed to find appropriate intersecting read. createUnitigs()-- read 582493 place 1 edgeTo tig 1544 reads # 11 286123- 705074 verified 16784- 13812 position 17568- 13812 covered 800- 3703 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 325 len 43098 first read 171822 with 1 placements - last read 360014 with 1 placements createUnitigs()-- read 171822 place 0 edgeTo tig 325 reads # 1 23893- 492706 verified 4625- 623 position 4625- 2 covered 0- 3883 SELF EXPECTED_3' createUnitigs()-- read 360014 place 0 edgeTo tig 325 reads # 33 253891- 618147 verified 32367- 43085 position 32367- 43090 covered 0- 10721 SELF createUnitigs()-- tig 328 len 20443 first read 330139 with 15 placements - last read 571983 with 6 placements createUnitigs()-- read 330139 place 0 edgeTo tig 328 reads # 1 261483- 720499 verified 938- 8377 position -80- 8377 covered 0- 8375 SELF Scan reads from #100 to #102 for low coordinate in verified region 13853-16727 Test read # 100 ident 140439 13853- 17488 against verified region 13853- 16727 Test read # 102 ident 647483 14183- 16993 against verified region 13853- 16727 - CANDIDATE hangs -232 -5912 - SAVED Found appropriate intersecting read. createUnitigs()-- read 330139 place 1 edgeTo tig 328 reads # 100 140439- 647483 verified 16727- 13853 position 16727- 8236 covered 0- 2723 BREAK at pos 14183 read 647483 isLow 1 sim 1.0000 Scan reads from #69 to #103 for low coordinate in verified region 13852-17615 Test read # 69 ident 58834 7227- 14713 against verified region 13852- 17615 Test read # 70 ident 337690 7247- 16864 against verified region 13852- 17615 Test read # 71 ident 358618 7318- 8623 against verified region 13852- 17615 Test read # 72 ident 79949 7402- 15153 against verified region 13852- 17615 Test read # 73 ident 537990 7516- 10860 against verified region 13852- 17615 Test read # 74 ident 537992 7576- 13058 against verified region 13852- 17615 Test read # 75 ident 58833 7790- 15255 against verified region 13852- 17615 Test read # 76 ident 383177 8021- 14020 against verified region 13852- 17615 Test read # 77 ident 43925 8079- 14644 against verified region 13852- 17615 Test read # 78 ident 696195 8297- 14707 against verified region 13852- 17615 Test read # 79 ident 24741 8436- 11084 against verified region 13852- 17615 Test read # 80 ident 492683 8465- 13461 against verified region 13852- 17615 Test read # 84 ident 720499 8758- 16226 against verified region 13852- 17615 Test read # 88 ident 43926 9412- 15846 against verified region 13852- 17615 Test read # 98 ident 595064 12730- 15024 against verified region 13852- 17615 Test read # 99 ident 158801 13695- 17615 against verified region 13852- 17615 Test read # 100 ident 140439 13853- 17488 against verified region 13852- 17615 - CANDIDATE hangs -795 -5652 Test read # 102 ident 647483 14183- 16993 against verified region 13852- 17615 - CANDIDATE hangs -232 -5912 Test read # 103 ident 362300 16089- 17284 against verified region 13852- 17615 - CANDIDATE hangs 5236 -1976 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 2 edgeTo tig 328 reads # 69 58834- 362300 verified 17615- 13852 position 22342- 13852 covered 4945- 8375 EXPECTED_5' NO_OVERLAPS Scan reads from #15 to #18 for low coordinate in verified region 7266-8363 Test read # 15 ident 389707 7266- 13443 against verified region 7266- 8363 Test read # 18 ident 39752 7317- 13519 against verified region 7266- 8363 - CANDIDATE hangs -5312 -7559 - SAVED Found appropriate intersecting read. createUnitigs()-- read 330139 place 3 edgeTo tig 7897 reads # 15 389707- 39752 verified 8363- 7266 position 8363- -88 covered 0- 1175 BREAK at pos 7317 read 39752 isLow 1 sim 1.0000 Scan reads from #11 to #11 for low coordinate in verified region 6769-8740 Test read # 11 ident 407369 6769- 8740 against verified region 6769- 8740 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 4 edgeTo tig 7897 reads # 11 407369- 407369 verified 8740- 6769 position 11748- 3325 covered 3008- 4931 EXPECTED_5' NO_OVERLAPS Scan reads from #2 to #13 for low coordinate in verified region 7192-9111 Test read # 2 ident 422965 2516- 9111 against verified region 7192- 9111 Test read # 4 ident 158251 5956- 8129 against verified region 7192- 9111 Test read # 5 ident 634438 6033- 8045 against verified region 7192- 9111 Test read # 6 ident 352739 6513- 8320 against verified region 7192- 9111 Test read # 7 ident 552320 6535- 8451 against verified region 7192- 9111 Test read # 8 ident 657225 6578- 8795 against verified region 7192- 9111 Test read # 11 ident 407369 6769- 8740 against verified region 7192- 9111 Test read # 12 ident 255798 6867- 8120 against verified region 7192- 9111 Test read # 13 ident 422967 7141- 8205 against verified region 7192- 9111 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 5 edgeTo tig 7897 reads # 2 422965- 422967 verified 9111- 7192 position 15611- 7192 covered 6122- 8375 EXPECTED_5' NO_OVERLAPS Scan reads from #39 to #42 for high coordinate in verified region 22867-25551 Test read # 39 ident 140437 18038- 25250 against verified region 22867- 25551 - CANDIDATE hangs -4800 -6009 - SAVED Test read # 40 ident 140438 18276- 25484 against verified region 22867- 25551 - CANDIDATE hangs -4468 -5675 - SAVED Test read # 41 ident 140435 18277- 24161 against verified region 22867- 25551 - CANDIDATE hangs -4828 -7341 Test read # 42 ident 140436 18309- 25551 against verified region 22867- 25551 Found appropriate intersecting read. createUnitigs()-- read 330139 place 6 edgeTo tig 113121 reads # 39 140437- 140436 verified 22867- 25551 position 22867- 31280 covered 0- 2723 NOT_SIMILAR Scan reads from #1 to #1 for high coordinate in verified region 900-2783 Test read # 1 ident 253603 900- 9181 against verified region 900- 2783 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 7 edgeTo tig 113122 reads # 1 253603- 253603 verified 900- 2783 position -5659- 2783 covered 6559- 8375 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #3 for high coordinate in verified region 0-5322 Test read # 0 ident 699198 0- 12246 against verified region 0- 5322 Test read # 1 ident 253603 900- 9181 against verified region 0- 5322 Test read # 3 ident 248976 3882- 10758 against verified region 0- 5322 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 8 edgeTo tig 113122 reads # 0 699198- 248976 verified 0- 5322 position -3148- 5322 covered 3680- 8375 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #4 to #43 for high coordinate in verified region 3970-9548 Test read # 4 ident 591682 3970- 11300 against verified region 3970- 9548 Test read # 5 ident 591678 4093- 11427 against verified region 3970- 9548 Test read # 6 ident 591681 4122- 11471 against verified region 3970- 9548 Test read # 7 ident 591679 4141- 11444 against verified region 3970- 9548 Test read # 8 ident 591683 4173- 11524 against verified region 3970- 9548 Test read # 9 ident 591680 4194- 11537 against verified region 3970- 9548 Test read # 11 ident 449650 4694- 10538 against verified region 3970- 9548 Test read # 12 ident 590674 5195- 9857 against verified region 3970- 9548 Test read # 14 ident 389759 5584- 8528 against verified region 3970- 9548 - CANDIDATE hangs 6432 940 Test read # 17 ident 422966 6127- 13477 against verified region 3970- 9548 Test read # 19 ident 435364 6428- 13501 against verified region 3970- 9548 Test read # 22 ident 199240 6867- 14332 against verified region 3970- 9548 Test read # 26 ident 78649 7164- 13353 against verified region 3970- 9548 Test read # 27 ident 591684 7268- 11970 against verified region 3970- 9548 Test read # 28 ident 643222 7327- 13390 against verified region 3970- 9548 Test read # 29 ident 140147 7340- 12983 against verified region 3970- 9548 Test read # 30 ident 428110 7365- 14402 against verified region 3970- 9548 Test read # 32 ident 607597 7392- 14774 against verified region 3970- 9548 Test read # 34 ident 435363 7779- 14820 against verified region 3970- 9548 Test read # 42 ident 567068 9606- 17799 against verified region 3970- 9548 Test read # 43 ident 409767 10353- 16559 against verified region 3970- 9548 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 9 edgeTo tig 113122 reads # 4 591682- 409767 verified 3970- 9548 position 1073- 9548 covered 2451- 8375 EXPECTED_5' NO_OVERLAPS Scan reads from #73 to #73 for low coordinate in verified region 18032-20477 Test read # 73 ident 592518 18032- 22143 against verified region 18032- 20477 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 10 edgeTo tig 113122 reads # 73 592518- 592518 verified 20477- 18032 position 20477- 12042 covered 0- 2385 NO_OVERLAPS Scan reads from #72 to #72 for low coordinate in verified region 17778-21785 Test read # 72 ident 255797 17778- 21785 against verified region 17778- 21785 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 11 edgeTo tig 113122 reads # 72 255797- 255797 verified 21785- 17778 position 22467- 14006 covered 682- 4603 EXPECTED_5' NO_OVERLAPS Scan reads from #55 to #62 for low coordinate in verified region 17176-18380 Test read # 55 ident 640434 11769- 18378 against verified region 17176- 18380 Test read # 56 ident 640430 11770- 18363 against verified region 17176- 18380 Test read # 57 ident 640431 11773- 18375 against verified region 17176- 18380 Test read # 58 ident 640435 11774- 18380 against verified region 17176- 18380 Test read # 62 ident 640432 11988- 18365 against verified region 17176- 18380 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 12 edgeTo tig 113122 reads # 55 640434- 640432 verified 18380- 17176 position 25635- 17176 covered 7189- 8375 EXPECTED_5' NO_OVERLAPS Scan reads from #67 to #71 for low coordinate in verified region 19124-22079 Test read # 67 ident 566043 13970- 22079 against verified region 19124- 22079 Test read # 71 ident 184500 17228- 20732 against verified region 19124- 22079 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 13 edgeTo tig 113122 reads # 67 566043- 184500 verified 22079- 19124 position 27556- 19124 covered 5712- 8375 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 1312-2584 Test read # 0 ident 352738 0- 2584 against verified region 1312- 2584 Failed to find appropriate intersecting read. createUnitigs()-- read 330139 place 14 edgeTo tig 113401 reads # 0 352738- 352738 verified 1312- 2584 position 1312- 9735 covered 0- 1224 NO_OVERLAPS createUnitigs()-- saving 2 breakpoints to master list. Scan reads from #20 to #61 for high coordinate in verified region 3071-8850 Test read # 20 ident 262948 3071- 6632 against verified region 3071- 8850 - CANDIDATE hangs 2664 -1594 Test read # 33 ident 711741 3991- 7415 against verified region 3071- 8850 - CANDIDATE hangs 2882 -1541 Test read # 35 ident 295261 4254- 5689 against verified region 3071- 8850 - CANDIDATE hangs 5057 -1313 Test read # 36 ident 131931 4263- 6277 against verified region 3071- 8850 - CANDIDATE hangs 4198 -1595 Test read # 47 ident 507543 5103- 6875 against verified region 3071- 8850 - CANDIDATE hangs 4781 -1234 Test read # 48 ident 85578 5347- 8070 against verified region 3071- 8850 - CANDIDATE hangs 3929 -1177 Test read # 49 ident 155911 5487- 6735 against verified region 3071- 8850 - CANDIDATE hangs 4099 -2449 Test read # 51 ident 81070 5748- 7589 against verified region 3071- 8850 - CANDIDATE hangs 3462 -2516 Test read # 52 ident 362230 6031- 7451 against verified region 3071- 8850 - CANDIDATE hangs 5176 -1195 Test read # 54 ident 252541 6109- 10317 against verified region 3071- 8850 Test read # 57 ident 404627 6494- 16176 against verified region 3071- 8850 Test read # 61 ident 143279 6559- 7643 against verified region 3071- 8850 - CANDIDATE hangs 5477 -1234 Failed to find appropriate intersecting read. createUnitigs()-- read 571983 place 0 edgeTo tig 328 reads # 20 262948- 143279 verified 3071- 8850 position 1034- 8850 covered 2664- 6982 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 571983 place 1 edgeTo tig 328 reads # 57 404627- 349728 verified 17784- 12504 position 20406- 12504 covered 2598- 7792 SELF EXPECTED_5' Scan reads from #8 to #11 for low coordinate in verified region 6578-8795 Test read # 8 ident 657225 6578- 8795 against verified region 6578- 8795 Test read # 11 ident 407369 6769- 8740 against verified region 6578- 8795 - CANDIDATE hangs 4122 -1736 Failed to find appropriate intersecting read. createUnitigs()-- read 571983 place 2 edgeTo tig 7897 reads # 8 657225- 407369 verified 8795- 6578 position 12937- 5096 covered 4122- 6374 EXPECTED_5' NO_OVERLAPS Scan reads from #32 to #42 for high coordinate in verified region 19172-25551 Test read # 32 ident 562327 11277- 20854 against verified region 19172- 25551 - CANDIDATE hangs -7461 -5656 - SAVED Test read # 37 ident 435037 14638- 20630 against verified region 19172- 25551 - CANDIDATE hangs -4326 -6091 Test read # 39 ident 140437 18038- 25250 against verified region 19172- 25551 - CANDIDATE hangs -1089 -1635 - SAVED Test read # 40 ident 140438 18276- 25484 against verified region 19172- 25551 - CANDIDATE hangs -1111 -1658 - SAVED Test read # 41 ident 140435 18277- 24161 against verified region 19172- 25551 - CANDIDATE hangs -1115 -2982 Test read # 42 ident 140436 18309- 25551 against verified region 19172- 25551 Found appropriate intersecting read. createUnitigs()-- read 571983 place 3 edgeTo tig 113121 reads # 32 562327- 140436 verified 19172- 25551 position 19172- 26931 covered 0- 6157 NOT_SIMILAR Scan reads from #72 to #73 for low coordinate in verified region 17778-22143 Test read # 72 ident 255797 17778- 21785 against verified region 17778- 22143 Test read # 73 ident 592518 18032- 22143 against verified region 17778- 22143 - CANDIDATE hangs 2649 -1084 Failed to find appropriate intersecting read. createUnitigs()-- read 571983 place 4 edgeTo tig 113122 reads # 72 255797- 592518 verified 22143- 17778 position 24723- 16863 covered 2649- 6793 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 0-2584 Test read # 0 ident 352738 0- 2584 against verified region 0- 2584 Failed to find appropriate intersecting read. createUnitigs()-- read 571983 place 5 edgeTo tig 113401 reads # 0 352738- 352738 verified 0- 2584 position -2647- 5197 covered 2647- 5179 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 334 len 13607 first read 479377 with 1 placements - last read 122130 with 4 placements createUnitigs()-- read 479377 place 0 edgeTo tig 334 reads # 1 156908- 82098 verified 25- 5526 position 25- 5526 covered 0- 5455 SELF createUnitigs()-- read 122130 place 0 edgeTo tig 334 reads # 0 479377- 51487 verified 13244- 134 position 13580- 134 covered 358- 13362 SELF EXPECTED_5' Scan reads from #0 to #1 for low coordinate in verified region 0-1435 Test read # 0 ident 220381 0- 11928 against verified region 0- 1435 Test read # 1 ident 439368 52- 1678 against verified region 0- 1435 - CANDIDATE hangs -254 -12011 - SAVED Found appropriate intersecting read. createUnitigs()-- read 122130 place 1 edgeTo tig 3690 reads # 0 220381- 439368 verified 1435- 0 position 1435- -11959 covered 0- 1402 BREAK at pos 52 read 439368 isLow 1 sim 1.0000 Scan reads from #0 to #38 for low coordinate in verified region 0-8696 Test read # 0 ident 635949 0- 6450 against verified region 0- 8696 Test read # 1 ident 614607 337- 7083 against verified region 0- 8696 - CANDIDATE hangs 1579 -5155 Test read # 2 ident 409868 369- 7287 against verified region 0- 8696 - CANDIDATE hangs 1381 -5177 Test read # 3 ident 582765 457- 3394 against verified region 0- 8696 - CANDIDATE hangs 5246 -5228 Test read # 4 ident 193061 479- 2749 against verified region 0- 8696 - CANDIDATE hangs 5880 -5251 Test read # 5 ident 452941 481- 8971 against verified region 0- 8696 - CANDIDATE hangs -253 -5257 - SAVED Test read # 6 ident 289048 485- 3990 against verified region 0- 8696 - CANDIDATE hangs 4665 -5272 Test read # 7 ident 402384 510- 2882 against verified region 0- 8696 - CANDIDATE hangs 5752 -5281 Test read # 8 ident 406150 539- 2897 against verified region 0- 8696 - CANDIDATE hangs 5733 -5309 Test read # 9 ident 690737 1401- 4393 against verified region 0- 8696 - CANDIDATE hangs 4240 -6141 Test read # 10 ident 638527 1694- 5609 against verified region 0- 8696 - CANDIDATE hangs 3021 -6414 Test read # 13 ident 319668 2480- 9011 against verified region 0- 8696 - CANDIDATE hangs -295 -7213 Test read # 14 ident 319670 2484- 9217 against verified region 0- 8696 - CANDIDATE hangs -495 -7219 Test read # 15 ident 319671 2514- 9212 against verified region 0- 8696 - CANDIDATE hangs -490 -7247 Test read # 16 ident 319669 2525- 8970 against verified region 0- 8696 - CANDIDATE hangs -258 -7252 Test read # 17 ident 102181 2866- 9096 against verified region 0- 8696 - CANDIDATE hangs -376 -7600 Test read # 18 ident 102182 2872- 9086 against verified region 0- 8696 - CANDIDATE hangs -365 -7602 Test read # 19 ident 102179 2873- 9073 against verified region 0- 8696 - CANDIDATE hangs -356 -7604 Test read # 20 ident 102178 2875- 9093 against verified region 0- 8696 - CANDIDATE hangs -373 -7608 Test read # 21 ident 102180 2898- 9096 against verified region 0- 8696 - CANDIDATE hangs -376 -7630 Test read # 22 ident 108070 2953- 8991 against verified region 0- 8696 - CANDIDATE hangs -277 -7681 Test read # 23 ident 108069 2966- 8993 against verified region 0- 8696 - CANDIDATE hangs -278 -7694 Test read # 24 ident 292653 2996- 8948 against verified region 0- 8696 - CANDIDATE hangs -222 -7756 Test read # 25 ident 108071 2997- 8965 against verified region 0- 8696 - CANDIDATE hangs -256 -7719 Test read # 26 ident 292652 4349- 8961 against verified region 0- 8696 - CANDIDATE hangs -237 -9080 Test read # 27 ident 281606 4451- 8963 against verified region 0- 8696 - CANDIDATE hangs -242 -9177 Test read # 28 ident 581624 4624- 7896 against verified region 0- 8696 - CANDIDATE hangs 789 -9340 Test read # 29 ident 686905 4729- 8991 against verified region 0- 8696 - CANDIDATE hangs -275 -9448 Test read # 30 ident 250401 4950- 8958 against verified region 0- 8696 - CANDIDATE hangs -237 -9672 Test read # 31 ident 96681 5117- 8975 against verified region 0- 8696 - CANDIDATE hangs -252 -9839 Test read # 32 ident 102177 5402- 8980 against verified region 0- 8696 - CANDIDATE hangs -263 -10118 Test read # 33 ident 272439 5513- 8838 against verified region 0- 8696 - CANDIDATE hangs -129 -10226 Test read # 34 ident 630243 5550- 8962 against verified region 0- 8696 - CANDIDATE hangs -246 -10268 Test read # 35 ident 122086 6033- 8974 against verified region 0- 8696 - CANDIDATE hangs -252 -10751 Test read # 36 ident 7808 6465- 8949 against verified region 0- 8696 - CANDIDATE hangs -218 -11188 Test read # 37 ident 7809 6766- 8947 against verified region 0- 8696 - CANDIDATE hangs -224 -11487 Test read # 38 ident 140761 6847- 8149 against verified region 0- 8696 - CANDIDATE hangs 546 -11555 Found appropriate intersecting read. createUnitigs()-- read 122130 place 2 edgeTo tig 113128 reads # 0 635949- 140761 verified 8696- 0 position 8696- -4740 covered 0- 8559 BREAK at pos 481 read 452941 isLow 1 sim 0.9576 Scan reads from #0 to #2 for low coordinate in verified region 0-7232 Test read # 0 ident 510692 0- 9414 against verified region 0- 7232 Test read # 1 ident 510691 8- 9460 against verified region 0- 7232 - CANDIDATE hangs -2226 -6253 - SAVED Test read # 2 ident 510693 1616- 9432 against verified region 0- 7232 - CANDIDATE hangs -2198 -7836 Found appropriate intersecting read. createUnitigs()-- read 122130 place 3 edgeTo tig 113129 reads # 0 510692- 510693 verified 7232- 0 position 7232- -6240 covered 0- 7109 BREAK at pos 8 read 510691 isLow 1 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- tig 340 len 18632 first read 70681 with 4 placements - last read 521623 with 1 placements Scan reads from #7 to #7 for low coordinate in verified region 3871-4609 Test read # 7 ident 529927 3871- 6220 against verified region 3871- 4609 Failed to find appropriate intersecting read. createUnitigs()-- read 70681 place 0 edgeTo tig 260 reads # 7 529927- 529927 verified 3871- 4609 position -7944- 4609 covered 11815- 12539 NO_OVERLAPS createUnitigs()-- read 70681 place 1 edgeTo tig 340 reads # 1 70682- 521623 verified 12603- 78 position 12603- 39 covered 0- 12468 SELF EXPECTED_3' Scan reads from #1 to #19 for low coordinate in verified region 81-1281 Test read # 1 ident 621434 81- 3768 against verified region 81- 1281 Test read # 2 ident 586398 109- 1447 against verified region 81- 1281 - CANDIDATE hangs 11396 170 - SAVED Test read # 3 ident 636012 110- 1888 against verified region 81- 1281 - CANDIDATE hangs 11399 634 Test read # 4 ident 117745 113- 4348 against verified region 81- 1281 - CANDIDATE hangs 11395 3077 Test read # 5 ident 401944 113- 2100 against verified region 81- 1281 - CANDIDATE hangs 11396 834 Test read # 6 ident 516366 115- 2300 against verified region 81- 1281 - CANDIDATE hangs 11395 1019 Test read # 7 ident 628903 117- 4051 against verified region 81- 1281 - CANDIDATE hangs 11394 2771 Test read # 8 ident 233590 117- 2684 against verified region 81- 1281 - CANDIDATE hangs 11397 1410 Test read # 10 ident 195650 119- 4594 against verified region 81- 1281 - CANDIDATE hangs 11395 3301 Test read # 11 ident 220882 120- 3574 against verified region 81- 1281 - CANDIDATE hangs 11395 2273 Test read # 12 ident 516365 120- 2267 against verified region 81- 1281 - CANDIDATE hangs 11402 997 Test read # 14 ident 347069 136- 1609 against verified region 81- 1281 - CANDIDATE hangs 11416 335 Test read # 15 ident 605482 137- 1983 against verified region 81- 1281 - CANDIDATE hangs 11412 702 Test read # 16 ident 557913 184- 4146 against verified region 81- 1281 - CANDIDATE hangs 11458 2845 Test read # 18 ident 306260 574- 4184 against verified region 81- 1281 - CANDIDATE hangs 11840 2876 Test read # 19 ident 527573 575- 5784 against verified region 81- 1281 - CANDIDATE hangs 11845 4487 Found appropriate intersecting read. createUnitigs()-- read 70681 place 2 edgeTo tig 113169 reads # 1 621434- 527573 verified 81- 1281 position -11279- 1281 covered 11371- 12539 BREAK at pos 109 read 586398 isLow 1 sim 0.9767 Scan reads from #25 to #38 for high coordinate in verified region 11812-12986 Test read # 25 ident 310135 6490- 12986 against verified region 11812- 12986 Test read # 31 ident 128343 8453- 12980 against verified region 11812- 12986 - CANDIDATE hangs 11395 3369 - SAVED Test read # 32 ident 29659 8458- 12976 against verified region 11812- 12986 - CANDIDATE hangs 11395 3366 Test read # 33 ident 272082 8470- 12968 against verified region 11812- 12986 - CANDIDATE hangs 11391 3326 Test read # 38 ident 522468 11671- 12975 against verified region 11812- 12986 - CANDIDATE hangs 11395 162 Found appropriate intersecting read. createUnitigs()-- read 70681 place 3 edgeTo tig 113169 reads # 25 310135- 522468 verified 12986- 11812 position 24368- 11812 covered 11381- 12539 BREAK at pos 12980 read 128343 isLow 0 sim 0.9906 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 521623 place 0 edgeTo tig 340 reads # 0 70681- 258167 verified 11862- 16228 position 11862- 18635 covered 0- 4294 SELF EXPECTED_3' createUnitigs()-- tig 341 len 11900 first read 10730 with 2 placements - last read 522790 with 1 placements Scan reads from #101 to #227 for high coordinate in verified region 47666-52106 Test read # 101 ident 255236 32605- 50433 against verified region 47666- 52106 - CANDIDATE hangs 3648 14957 - SAVED Test read # 125 ident 239770 38105- 48906 against verified region 47666- 52106 - CANDIDATE hangs 5115 9413 Test read # 143 ident 477700 39043- 51169 against verified region 47666- 52106 - CANDIDATE hangs 2880 8516 - SAVED Test read # 144 ident 477699 39047- 51162 against verified region 47666- 52106 - CANDIDATE hangs 2885 8511 Test read # 152 ident 350572 39396- 49376 against verified region 47666- 52106 - CANDIDATE hangs 4647 8131 Test read # 162 ident 589235 41208- 51169 against verified region 47666- 52106 - CANDIDATE hangs 2883 6373 Test read # 163 ident 350571 41347- 49376 against verified region 47666- 52106 - CANDIDATE hangs 4653 6232 Test read # 170 ident 533426 42110- 52106 against verified region 47666- 52106 Test read # 171 ident 533427 42112- 52087 against verified region 47666- 52106 - CANDIDATE hangs 2038 5564 - SAVED Test read # 178 ident 602604 43229- 51456 against verified region 47666- 52106 - CANDIDATE hangs 2585 4423 Test read # 179 ident 621571 43352- 51998 against verified region 47666- 52106 - CANDIDATE hangs 2103 4315 Test read # 181 ident 528893 43799- 51209 against verified region 47666- 52106 - CANDIDATE hangs 2851 3854 Test read # 182 ident 312029 44073- 49075 against verified region 47666- 52106 - CANDIDATE hangs 4989 3589 Test read # 191 ident 438805 44589- 48797 against verified region 47666- 52106 - CANDIDATE hangs 5228 3055 Test read # 192 ident 589234 44600- 51166 against verified region 47666- 52106 - CANDIDATE hangs 2883 3033 Test read # 196 ident 260661 45144- 50916 against verified region 47666- 52106 - CANDIDATE hangs 3148 2537 Test read # 197 ident 501769 45209- 48584 against verified region 47666- 52106 - CANDIDATE hangs 5447 2458 Test read # 199 ident 16030 45315- 50029 against verified region 47666- 52106 - CANDIDATE hangs 4058 2436 Test read # 201 ident 702392 46310- 51151 against verified region 47666- 52106 - CANDIDATE hangs 2914 1403 Test read # 202 ident 564108 46687- 51852 against verified region 47666- 52106 - CANDIDATE hangs 2216 1039 Test read # 205 ident 312028 47072- 48584 against verified region 47666- 52106 - CANDIDATE hangs 5458 676 Test read # 206 ident 184448 47103- 49839 against verified region 47666- 52106 - CANDIDATE hangs 4217 623 Test read # 211 ident 104522 47227- 51512 against verified region 47666- 52106 - CANDIDATE hangs 2547 500 Test read # 212 ident 104523 47270- 50183 against verified region 47666- 52106 - CANDIDATE hangs 3866 462 Test read # 214 ident 510499 47553- 51800 against verified region 47666- 52106 - CANDIDATE hangs 2293 190 Test read # 216 ident 303774 47649- 50168 against verified region 47666- 52106 - CANDIDATE hangs 3879 89 Test read # 217 ident 275600 47672- 51741 against verified region 47666- 52106 - CANDIDATE hangs 2327 61 Test read # 218 ident 10729 47721- 50894 against verified region 47666- 52106 - CANDIDATE hangs 3173 11 Test read # 227 ident 310035 48780- 51144 against verified region 47666- 52106 - CANDIDATE hangs 2920 -1019 Found appropriate intersecting read. createUnitigs()-- read 10730 place 0 edgeTo tig 50 reads # 101 255236- 310035 verified 52106- 47666 position 54060- 47666 covered 2027- 6278 BREAK at pos 52087 read 533427 isLow 0 sim 1.0000 createUnitigs()-- read 10730 place 1 edgeTo tig 341 reads # 1 10726- 522787 verified 6305- 12 position 6305- -1 covered 0- 6278 SELF createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 522790 place 0 edgeTo tig 341 reads # 0 10730- 191882 verified 4990- 11894 position 4990- 11896 covered 0- 6886 SELF createUnitigs()-- tig 345 len 41395 first read 337798 with 1 placements - last read 609867 with 2 placements createUnitigs()-- read 337798 place 0 edgeTo tig 345 reads # 1 563023- 180448 verified 5805- 5 position 5810- 5 covered 0- 5821 SELF createUnitigs()-- read 609867 place 0 edgeTo tig 345 reads # 73 696251- 609873 verified 34939- 41378 position 34939- 41378 covered 0- 6427 SELF Scan reads from #0 to #0 for low coordinate in verified region 0-2722 Test read # 0 ident 542069 0- 7071 against verified region 0- 2722 Failed to find appropriate intersecting read. createUnitigs()-- read 609867 place 1 edgeTo tig 584084 reads # 0 542069- 542069 verified 0- 2722 position -3685- 2722 covered 3685- 6427 NO_OVERLAPS createUnitigs()-- tig 353 len 27271 first read 649727 with 1 placements - last read 266081 with 1 placements createUnitigs()-- read 649727 place 0 edgeTo tig 353 reads # 1 649728- 344187 verified 19- 5981 position 19- 5981 covered 1- 5952 SELF EXPECTED_5' createUnitigs()-- read 266081 place 0 edgeTo tig 353 reads # 50 705330- 470907 verified 25319- 27190 position 25319- 27272 covered 0- 1870 SELF EXPECTED_3' createUnitigs()-- tig 364 len 42192 first read 36057 with 1 placements - last read 293196 with 1 placements createUnitigs()-- read 36057 place 0 edgeTo tig 364 reads # 1 36058- 400645 verified 7- 6038 position 1- 6038 covered 0- 6013 SELF createUnitigs()-- read 293196 place 0 edgeTo tig 364 reads # 34 205082- 31737 verified 42092- 38418 position 42193- 38418 covered 88- 3754 SELF EXPECTED_5' createUnitigs()-- tig 365 len 33481 first read 42686 with 1 placements - last read 258466 with 1 placements createUnitigs()-- read 42686 place 0 edgeTo tig 365 reads # 1 249935- 235610 verified 308- 10279 position 4- 10279 covered 329- 10215 SELF EXPECTED_5' createUnitigs()-- read 258466 place 0 edgeTo tig 365 reads # 29 669954- 639200 verified 26264- 33457 position 26264- 33457 covered 0- 7219 SELF EXPECTED_3' createUnitigs()-- tig 366 len 11944 first read 45125 with 1 placements - last read 388606 with 1 placements createUnitigs()-- read 45125 place 0 edgeTo tig 366 reads # 1 45121- 698212 verified 24- 3742 position 4- 3742 covered 11- 3711 SELF EXPECTED_5' createUnitigs()-- read 388606 place 0 edgeTo tig 366 reads # 1 45121- 388604 verified 11934- 6091 position 11943- 6091 covered 0- 5824 SELF createUnitigs()-- tig 367 len 38036 first read 53636 with 1 placements - last read 348202 with 6 placements createUnitigs()-- read 53636 place 0 edgeTo tig 367 reads # 1 189518- 298914 verified 6- 5972 position 6- 5979 covered 0- 5967 SELF createUnitigs()-- read 348202 place 0 edgeTo tig 367 reads # 41 550681- 361314 verified 37594- 29622 position 38031- 29450 covered 252- 8491 SELF EXPECTED_5' Scan reads from #0 to #492 for high coordinate in verified region 10115-18722 Test read # 0 ident 653095 0- 16421 against verified region 10115- 18722 - CANDIDATE hangs -11166 -3410 - SAVED Test read # 1 ident 622551 1270- 12887 against verified region 10115- 18722 - CANDIDATE hangs -8578 -5593 Test read # 2 ident 328992 3150- 15468 against verified region 10115- 18722 - CANDIDATE hangs -6657 -2996 Test read # 3 ident 577619 3842- 16064 against verified region 10115- 18722 - CANDIDATE hangs -6800 -3247 Test read # 4 ident 619882 3857- 14568 against verified region 10115- 18722 - CANDIDATE hangs -4869 -2824 Test read # 5 ident 559765 3872- 10344 against verified region 10115- 18722 - CANDIDATE hangs -4109 -6211 Test read # 7 ident 101 3987- 14135 against verified region 10115- 18722 - CANDIDATE hangs -7374 -5882 Test read # 8 ident 503812 4150- 11186 against verified region 10115- 18722 - CANDIDATE hangs -4083 -5629 Test read # 9 ident 660114 4155- 15269 against verified region 10115- 18722 - CANDIDATE hangs -9621 -7160 Test read # 10 ident 571497 4302- 13421 against verified region 10115- 18722 - CANDIDATE hangs -5126 -4659 Test read # 11 ident 330752 4303- 12036 against verified region 10115- 18722 - CANDIDATE hangs -4803 -5668 Test read # 12 ident 165900 4370- 12848 against verified region 10115- 18722 - CANDIDATE hangs -7201 -7347 Test read # 13 ident 122799 4372- 12131 against verified region 10115- 18722 - CANDIDATE hangs -3257 -4109 Test read # 14 ident 434674 4509- 13131 against verified region 10115- 18722 - CANDIDATE hangs -4166 -4180 Test read # 15 ident 67151 4665- 17283 against verified region 10115- 18722 - CANDIDATE hangs -10987 -7052 - SAVED Test read # 16 ident 328991 4801- 12534 against verified region 10115- 18722 - CANDIDATE hangs -4329 -5205 Test read # 17 ident 329125 4841- 14423 against verified region 10115- 18722 - CANDIDATE hangs -4779 -3858 Test read # 18 ident 634382 4910- 12337 against verified region 10115- 18722 - CANDIDATE hangs -3624 -4828 Test read # 19 ident 718649 4915- 12706 against verified region 10115- 18722 - CANDIDATE hangs -3135 -3975 Test read # 21 ident 503813 4923- 11884 against verified region 10115- 18722 - CANDIDATE hangs -1687 -3283 Test read # 22 ident 392352 5033- 10961 against verified region 10115- 18722 - CANDIDATE hangs -1300 -3907 Test read # 23 ident 503811 5035- 12140 against verified region 10115- 18722 - CANDIDATE hangs -1968 -3445 Test read # 24 ident 571498 5050- 14159 against verified region 10115- 18722 - CANDIDATE hangs -6315 -5863 Test read # 25 ident 660113 5060- 16174 against verified region 10115- 18722 - CANDIDATE hangs -6437 -3983 Test read # 26 ident 571495 5067- 14216 against verified region 10115- 18722 - CANDIDATE hangs -6498 -5998 Test read # 27 ident 503809 5081- 12066 against verified region 10115- 18722 - CANDIDATE hangs -1968 -3535 Test read # 29 ident 585334 5130- 19147 against verified region 10115- 18722 Test read # 31 ident 33570 5162- 14585 against verified region 10115- 18722 - CANDIDATE hangs -6872 -6107 Test read # 32 ident 144476 5162- 11191 against verified region 10115- 18722 - CANDIDATE hangs -2947 -5519 Test read # 34 ident 126252 5196- 9391 against verified region 10115- 18722 - CANDIDATE hangs -360 -4711 Test read # 35 ident 147057 5207- 14678 against verified region 10115- 18722 - CANDIDATE hangs -8261 -7440 Test read # 36 ident 503814 5210- 12092 against verified region 10115- 18722 - CANDIDATE hangs -1636 -3299 Test read # 37 ident 660112 5253- 16358 against verified region 10115- 18722 - CANDIDATE hangs -6632 -4185 Test read # 38 ident 340320 5281- 10877 against verified region 10115- 18722 - CANDIDATE hangs -4982 -7984 Test read # 39 ident 190488 5298- 10954 against verified region 10115- 18722 - CANDIDATE hangs -3174 -6101 Test read # 40 ident 21504 5341- 15641 against verified region 10115- 18722 - CANDIDATE hangs -4578 -2964 Test read # 41 ident 553216 5355- 15297 against verified region 10115- 18722 - CANDIDATE hangs -5753 -4471 Test read # 43 ident 21503 5398- 15720 against verified region 10115- 18722 - CANDIDATE hangs -4589 -2947 Test read # 44 ident 94361 5485- 10607 against verified region 10115- 18722 - CANDIDATE hangs -3337 -6790 Test read # 45 ident 553215 5495- 15680 against verified region 10115- 18722 - CANDIDATE hangs -4392 -2875 Test read # 46 ident 597202 5499- 15688 against verified region 10115- 18722 - CANDIDATE hangs -4525 -2998 Test read # 47 ident 88447 5543- 11806 against verified region 10115- 18722 - CANDIDATE hangs -3014 -5347 Test read # 48 ident 109094 5562- 13712 against verified region 10115- 18722 - CANDIDATE hangs -2684 -3157 Test read # 49 ident 44257 5600- 14889 against verified region 10115- 18722 - CANDIDATE hangs -7110 -6474 Test read # 50 ident 672380 5600- 13053 against verified region 10115- 18722 - CANDIDATE hangs -4993 -6169 Test read # 51 ident 571496 5631- 14777 against verified region 10115- 18722 - CANDIDATE hangs -5309 -4825 Test read # 52 ident 181774 5659- 9914 against verified region 10115- 18722 - CANDIDATE hangs -1266 -5587 Test read # 53 ident 225708 5664- 12707 against verified region 10115- 18722 - CANDIDATE hangs -2173 -3743 Test read # 54 ident 82920 5698- 9751 against verified region 10115- 18722 - CANDIDATE hangs -1718 -6233 Test read # 55 ident 513407 5716- 12545 against verified region 10115- 18722 - CANDIDATE hangs -3954 -5748 Test read # 56 ident 199721 5775- 12986 against verified region 10115- 18722 - CANDIDATE hangs -4111 -5528 Test read # 57 ident 285258 5785- 16649 against verified region 10115- 18722 - CANDIDATE hangs -5935 -3741 Test read # 58 ident 37057 5810- 12767 against verified region 10115- 18722 - CANDIDATE hangs -1023 -2703 Test read # 59 ident 254207 5837- 12843 against verified region 10115- 18722 - CANDIDATE hangs -4750 -6373 Test read # 61 ident 503815 5874- 12395 against verified region 10115- 18722 - CANDIDATE hangs -1982 -4029 Test read # 62 ident 162738 5894- 13761 against verified region 10115- 18722 - CANDIDATE hangs -2831 -3614 Test read # 63 ident 623778 5904- 14450 against verified region 10115- 18722 - CANDIDATE hangs -6104 -6206 Test read # 64 ident 340876 5917- 14316 against verified region 10115- 18722 - CANDIDATE hangs -3434 -3695 Test read # 65 ident 396982 5922- 15746 against verified region 10115- 18722 - CANDIDATE hangs -4699 -3509 Test read # 66 ident 705864 5931- 12760 against verified region 10115- 18722 - CANDIDATE hangs -2610 -4412 Test read # 67 ident 114286 5980- 11015 against verified region 10115- 18722 - CANDIDATE hangs -3382 -6928 Test read # 68 ident 666047 6023- 14038 against verified region 10115- 18722 - CANDIDATE hangs -3454 -4085 Test read # 69 ident 660111 6067- 17195 against verified region 10115- 18722 - CANDIDATE hangs -6945 -4487 Test read # 70 ident 307768 6075- 20068 against verified region 10115- 18722 Test read # 71 ident 434675 6158- 14582 against verified region 10115- 18722 - CANDIDATE hangs -4344 -4578 Test read # 72 ident 528894 6160- 14432 against verified region 10115- 18722 - CANDIDATE hangs -4708 -5090 Test read # 73 ident 614850 6167- 12799 against verified region 10115- 18722 - CANDIDATE hangs -2029 -4029 Test read # 75 ident 249671 6196- 10496 against verified region 10115- 18722 - CANDIDATE hangs -57 -4359 Test read # 76 ident 319638 6276- 13449 against verified region 10115- 18722 - CANDIDATE hangs -3369 -4848 Test read # 77 ident 475219 6289- 11051 against verified region 10115- 18722 - CANDIDATE hangs -2224 -6036 Test read # 78 ident 398617 6322- 11639 against verified region 10115- 18722 - CANDIDATE hangs -2408 -5692 Test read # 79 ident 561439 6323- 16309 against verified region 10115- 18722 - CANDIDATE hangs -4567 -3242 Test read # 80 ident 342575 6331- 13971 against verified region 10115- 18722 - CANDIDATE hangs -2260 -3283 Test read # 81 ident 68510 6362- 13647 against verified region 10115- 18722 - CANDIDATE hangs -4005 -5367 Test read # 82 ident 637434 6373- 12482 against verified region 10115- 18722 - CANDIDATE hangs -4978 -7477 Test read # 83 ident 267828 6378- 16343 against verified region 10115- 18722 - CANDIDATE hangs -6978 -5666 Test read # 84 ident 319639 6388- 13570 against verified region 10115- 18722 - CANDIDATE hangs -4224 -5685 Test read # 85 ident 385776 6399- 10638 against verified region 10115- 18722 - CANDIDATE hangs -3296 -7636 Test read # 86 ident 209991 6433- 11693 against verified region 10115- 18722 - CANDIDATE hangs -1247 -4579 Test read # 87 ident 560548 6436- 12256 against verified region 10115- 18722 - CANDIDATE hangs -3682 -6463 Test read # 88 ident 422534 6470- 10230 against verified region 10115- 18722 - CANDIDATE hangs -995 -5798 Test read # 89 ident 63379 6490- 11572 against verified region 10115- 18722 - CANDIDATE hangs -1861 -5368 Test read # 91 ident 21505 6504- 16793 against verified region 10115- 18722 - CANDIDATE hangs -5240 -3624 Test read # 92 ident 521638 6507- 13662 against verified region 10115- 18722 - CANDIDATE hangs -3436 -4920 Test read # 93 ident 490642 6508- 11603 against verified region 10115- 18722 - CANDIDATE hangs -881 -4368 Test read # 94 ident 645904 6510- 13296 against verified region 10115- 18722 - CANDIDATE hangs -30 -1767 Test read # 95 ident 398618 6516- 12189 against verified region 10115- 18722 - CANDIDATE hangs -517 -3423 Test read # 96 ident 319637 6529- 13694 against verified region 10115- 18722 - CANDIDATE hangs -5047 -6526 Test read # 97 ident 485382 6535- 14051 against verified region 10115- 18722 - CANDIDATE hangs -3311 -4450 Test read # 98 ident 103417 6543- 16744 against verified region 10115- 18722 - CANDIDATE hangs -5543 -4019 Test read # 99 ident 206515 6563- 14782 against verified region 10115- 18722 - CANDIDATE hangs -4395 -4829 Test read # 100 ident 68511 6572- 13856 against verified region 10115- 18722 - CANDIDATE hangs -4669 -6026 Test read # 101 ident 672381 6591- 14096 against verified region 10115- 18722 - CANDIDATE hangs -3649 -4800 Test read # 102 ident 553218 6602- 16521 against verified region 10115- 18722 - CANDIDATE hangs -4402 -3161 Test read # 103 ident 722388 6603- 13732 against verified region 10115- 18722 - CANDIDATE hangs -4574 -6091 Test read # 104 ident 536520 6610- 13877 against verified region 10115- 18722 - CANDIDATE hangs -6463 -7826 Test read # 106 ident 63381 6644- 11725 against verified region 10115- 18722 - CANDIDATE hangs -1693 -5203 Test read # 107 ident 278123 6647- 15131 against verified region 10115- 18722 - CANDIDATE hangs -5195 -5371 Test read # 109 ident 556599 6679- 12872 against verified region 10115- 18722 - CANDIDATE hangs -416 -2872 Test read # 110 ident 333727 6694- 13953 against verified region 10115- 18722 - CANDIDATE hangs -6392 -7780 Test read # 111 ident 343227 6714- 11473 against verified region 10115- 18722 - CANDIDATE hangs -1350 -5173 Test read # 112 ident 528896 6717- 15467 against verified region 10115- 18722 - CANDIDATE hangs -3512 -3427 Test read # 113 ident 400964 6719- 13691 against verified region 10115- 18722 - CANDIDATE hangs -2855 -4523 Test read # 114 ident 631016 6724- 15905 against verified region 10115- 18722 - CANDIDATE hangs -3688 -3170 Test read # 116 ident 88448 6750- 13091 against verified region 10115- 18722 - CANDIDATE hangs -4880 -7166 Test read # 117 ident 11886 6775- 13800 against verified region 10115- 18722 - CANDIDATE hangs -4892 -6510 Test read # 118 ident 300263 6790- 13456 against verified region 10115- 18722 - CANDIDATE hangs -3557 -5529 Test read # 119 ident 106690 6819- 14280 against verified region 10115- 18722 - CANDIDATE hangs -3578 -4771 Test read # 120 ident 173286 6833- 14261 against verified region 10115- 18722 - CANDIDATE hangs -3248 -4445 Test read # 122 ident 536521 6838- 12493 against verified region 10115- 18722 - CANDIDATE hangs -2877 -5830 Test read # 123 ident 669846 6840- 14673 against verified region 10115- 18722 - CANDIDATE hangs -3124 -3949 Test read # 125 ident 619975 6857- 14438 against verified region 10115- 18722 - CANDIDATE hangs -2711 -3782 Test read # 126 ident 625406 6869- 16308 against verified region 10115- 18722 - CANDIDATE hangs -4946 -4160 Test read # 127 ident 54445 6873- 14966 against verified region 10115- 18722 - CANDIDATE hangs -4553 -5098 Test read # 128 ident 442462 6875- 14515 against verified region 10115- 18722 - CANDIDATE hangs -2122 -3117 Test read # 129 ident 469229 6877- 14885 against verified region 10115- 18722 - CANDIDATE hangs -7191 -7813 Test read # 133 ident 68513 6974- 14267 against verified region 10115- 18722 - CANDIDATE hangs -2991 -4354 Test read # 135 ident 206514 7013- 15239 against verified region 10115- 18722 - CANDIDATE hangs -1707 -2170 Test read # 137 ident 679808 7040- 13691 against verified region 10115- 18722 - CANDIDATE hangs -2124 -4112 Test read # 138 ident 27739 7100- 16369 against verified region 10115- 18722 - CANDIDATE hangs -3696 -3096 Test read # 139 ident 549616 7106- 16309 against verified region 10115- 18722 - CANDIDATE hangs -4317 -3750 Test read # 140 ident 265206 7133- 13604 against verified region 10115- 18722 - CANDIDATE hangs -1038 -3197 Test read # 142 ident 618116 7143- 9991 against verified region 10115- 18722 - CANDIDATE hangs -412 -6149 Test read # 143 ident 175656 7150- 13014 against verified region 10115- 18722 - CANDIDATE hangs 108 -2690 Test read # 144 ident 692157 7153- 13301 against verified region 10115- 18722 - CANDIDATE hangs -2913 -5401 Test read # 145 ident 330753 7167- 14580 against verified region 10115- 18722 - CANDIDATE hangs -5505 -6759 Test read # 146 ident 330729 7168- 13485 against verified region 10115- 18722 - CANDIDATE hangs -1004 -3217 Test read # 147 ident 170362 7171- 12422 against verified region 10115- 18722 - CANDIDATE hangs -4117 -7465 Test read # 148 ident 63380 7173- 12157 against verified region 10115- 18722 - CANDIDATE hangs -1075 -4684 Test read # 149 ident 641268 7189- 14117 against verified region 10115- 18722 - CANDIDATE hangs -3632 -5334 Test read # 150 ident 162917 7218- 12444 against verified region 10115- 18722 - CANDIDATE hangs -2172 -5562 Test read # 152 ident 267827 7220- 16857 against verified region 10115- 18722 - CANDIDATE hangs -4316 -3423 Test read # 153 ident 190490 7222- 12923 against verified region 10115- 18722 - CANDIDATE hangs -3274 -6193 Test read # 154 ident 156696 7247- 14652 against verified region 10115- 18722 - CANDIDATE hangs -4731 -5972 Test read # 156 ident 70765 7274- 13561 against verified region 10115- 18722 - CANDIDATE hangs -2690 -5035 Test read # 157 ident 667638 7276- 11722 against verified region 10115- 18722 - CANDIDATE hangs -2534 -6684 Test read # 159 ident 359644 7297- 14853 against verified region 10115- 18722 - CANDIDATE hangs -5863 -6950 Test read # 160 ident 262195 7319- 12574 against verified region 10115- 18722 - CANDIDATE hangs -3261 -6626 Test read # 162 ident 11889 7331- 14230 against verified region 10115- 18722 - CANDIDATE hangs -1590 -3336 Test read # 164 ident 299542 7365- 13214 against verified region 10115- 18722 - CANDIDATE hangs -4528 -7316 Test read # 165 ident 313632 7384- 13656 against verified region 10115- 18722 - CANDIDATE hangs -1694 -4006 Test read # 166 ident 254868 7397- 10658 against verified region 10115- 18722 - CANDIDATE hangs -831 -6140 Test read # 167 ident 340322 7413- 12030 against verified region 10115- 18722 - CANDIDATE hangs -3258 -7263 Test read # 168 ident 679809 7421- 14074 against verified region 10115- 18722 - CANDIDATE hangs -2489 -4477 Test read # 170 ident 209990 7428- 12736 against verified region 10115- 18722 - CANDIDATE hangs -2719 -6031 Test read # 171 ident 226729 7435- 12300 against verified region 10115- 18722 - CANDIDATE hangs -686 -4431 Test read # 172 ident 394555 7436- 13077 against verified region 10115- 18722 - CANDIDATE hangs -3732 -6716 Test read # 173 ident 230028 7439- 12664 against verified region 10115- 18722 - CANDIDATE hangs -2295 -5658 Test read # 174 ident 100686 7443- 11984 against verified region 10115- 18722 - CANDIDATE hangs -3721 -7786 Test read # 175 ident 470330 7495- 18939 against verified region 10115- 18722 Test read # 176 ident 89116 7500- 13980 against verified region 10115- 18722 - CANDIDATE hangs -1588 -3758 Test read # 178 ident 19204 7505- 13151 against verified region 10115- 18722 - CANDIDATE hangs -2374 -5357 Test read # 179 ident 11888 7513- 14517 against verified region 10115- 18722 - CANDIDATE hangs -6210 -7839 Test read # 180 ident 291120 7515- 11430 against verified region 10115- 18722 - CANDIDATE hangs -1133 -5763 Test read # 181 ident 213907 7519- 11123 against verified region 10115- 18722 - CANDIDATE hangs -195 -5178 Test read # 182 ident 593215 7532- 14791 against verified region 10115- 18722 - CANDIDATE hangs -3481 -4874 Test read # 183 ident 249853 7536- 14372 against verified region 10115- 18722 - CANDIDATE hangs -3651 -5454 Test read # 184 ident 400642 7537- 13349 against verified region 10115- 18722 - CANDIDATE hangs -4849 -7655 Test read # 185 ident 194662 7544- 14525 against verified region 10115- 18722 - CANDIDATE hangs -1616 -3295 Test read # 186 ident 593633 7561- 14045 against verified region 10115- 18722 - CANDIDATE hangs -1801 -3954 Test read # 187 ident 680429 7564- 14482 against verified region 10115- 18722 - CANDIDATE hangs -5159 -6885 Test read # 189 ident 593634 7573- 14048 against verified region 10115- 18722 - CANDIDATE hangs -2300 -4457 Test read # 190 ident 485383 7574- 15072 against verified region 10115- 18722 - CANDIDATE hangs -3147 -4296 Test read # 191 ident 593632 7583- 14086 against verified region 10115- 18722 - CANDIDATE hangs -5508 -7629 Test read # 192 ident 343957 7584- 16005 against verified region 10115- 18722 - CANDIDATE hangs -7553 -7764 Test read # 194 ident 237377 7619- 13088 against verified region 10115- 18722 - CANDIDATE hangs -2658 -5807 Test read # 195 ident 19207 7622- 13628 against verified region 10115- 18722 - CANDIDATE hangs -373 -3027 Test read # 196 ident 173312 7636- 14269 against verified region 10115- 18722 - CANDIDATE hangs -2859 -4860 Test read # 199 ident 620588 7669- 11937 against verified region 10115- 18722 - CANDIDATE hangs -1240 -5583 Test read # 202 ident 528895 7695- 18058 against verified region 10115- 18722 - CANDIDATE hangs -5019 -3271 - SAVED Test read # 206 ident 65397 7706- 14192 against verified region 10115- 18722 - CANDIDATE hangs -1319 -3477 Test read # 207 ident 342574 7713- 15041 against verified region 10115- 18722 - CANDIDATE hangs -1894 -3253 Test read # 208 ident 556598 7721- 13942 against verified region 10115- 18722 - CANDIDATE hangs -2107 -4523 Test read # 209 ident 705178 7723- 10435 against verified region 10115- 18722 - CANDIDATE hangs -1192 -7026 Test read # 210 ident 393994 7728- 11006 against verified region 10115- 18722 - CANDIDATE hangs -862 -6148 Test read # 211 ident 721636 7735- 11967 against verified region 10115- 18722 - CANDIDATE hangs -3422 -7775 Test read # 212 ident 301750 7748- 10508 against verified region 10115- 18722 - CANDIDATE hangs -1295 -7090 Test read # 213 ident 106693 7771- 15210 against verified region 10115- 18722 - CANDIDATE hangs -2400 -3624 Test read # 214 ident 404490 7778- 14220 against verified region 10115- 18722 - CANDIDATE hangs -1979 -4153 Test read # 215 ident 100685 7789- 12362 against verified region 10115- 18722 - CANDIDATE hangs -1582 -5602 Test read # 216 ident 676441 7790- 14111 against verified region 10115- 18722 - CANDIDATE hangs -1880 -4191 Test read # 217 ident 672382 7797- 15281 against verified region 10115- 18722 - CANDIDATE hangs -1972 -3132 Test read # 219 ident 68512 7824- 15126 against verified region 10115- 18722 - CANDIDATE hangs -3177 -4523 Test read # 220 ident 608328 7826- 13649 against verified region 10115- 18722 - CANDIDATE hangs -367 -3190 Test read # 221 ident 291119 7840- 11724 against verified region 10115- 18722 - CANDIDATE hangs -1476 -6159 Test read # 222 ident 404486 7871- 14331 against verified region 10115- 18722 - CANDIDATE hangs -966 -3154 Test read # 223 ident 400643 7876- 13695 against verified region 10115- 18722 - CANDIDATE hangs -2664 -5478 Test read # 224 ident 181777 7895- 14015 against verified region 10115- 18722 - CANDIDATE hangs -4759 -7262 Test read # 227 ident 188305 7947- 13160 against verified region 10115- 18722 - CANDIDATE hangs -2125 -5526 Test read # 229 ident 641267 7966- 14903 against verified region 10115- 18722 - CANDIDATE hangs -2313 -3992 Test read # 231 ident 151352 7976- 12491 against verified region 10115- 18722 - CANDIDATE hangs -1066 -5156 Test read # 232 ident 573505 7984- 11083 against verified region 10115- 18722 - CANDIDATE hangs -1049 -6518 Test read # 233 ident 571410 7985- 14181 against verified region 10115- 18722 - CANDIDATE hangs -2923 -5365 Test read # 234 ident 252812 7990- 13105 against verified region 10115- 18722 - CANDIDATE hangs -1509 -5013 Test read # 235 ident 250685 8002- 15155 against verified region 10115- 18722 - CANDIDATE hangs -1353 -2881 Test read # 237 ident 190489 8052- 15609 against verified region 10115- 18722 - CANDIDATE hangs -2481 -3532 Test read # 240 ident 255706 8098- 14412 against verified region 10115- 18722 - CANDIDATE hangs -2037 -4358 Test read # 243 ident 704187 8140- 12569 against verified region 10115- 18722 - CANDIDATE hangs -1189 -5355 Test read # 244 ident 345321 8141- 10945 against verified region 10115- 18722 - CANDIDATE hangs 1844 -3933 Test read # 246 ident 206517 8161- 14744 against verified region 10115- 18722 - CANDIDATE hangs -1545 -3609 Test read # 247 ident 329124 8171- 12074 against verified region 10115- 18722 - CANDIDATE hangs -4 -4724 Test read # 248 ident 298469 8199- 11895 against verified region 10115- 18722 - CANDIDATE hangs -92 -4975 Test read # 249 ident 704608 8206- 15371 against verified region 10115- 18722 - CANDIDATE hangs -1531 -3000 Test read # 250 ident 651929 8207- 12605 against verified region 10115- 18722 - CANDIDATE hangs -3053 -7239 Test read # 251 ident 498848 8208- 13356 against verified region 10115- 18722 - CANDIDATE hangs -1051 -4527 Test read # 252 ident 420371 8225- 11571 against verified region 10115- 18722 - CANDIDATE hangs 1484 -3699 Test read # 253 ident 718106 8239- 10957 against verified region 10115- 18722 - CANDIDATE hangs 2454 -3397 Test read # 255 ident 259188 8265- 10591 against verified region 10115- 18722 - CANDIDATE hangs -884 -7107 Test read # 256 ident 199664 8267- 15020 against verified region 10115- 18722 - CANDIDATE hangs -2102 -3988 Test read # 257 ident 81763 8268- 10557 against verified region 10115- 18722 - CANDIDATE hangs -1385 -7637 Test read # 259 ident 695555 8272- 13809 against verified region 10115- 18722 - CANDIDATE hangs -419 -3522 Test read # 260 ident 380082 8280- 10849 against verified region 10115- 18722 - CANDIDATE hangs 748 -5244 Test read # 261 ident 313634 8285- 14622 against verified region 10115- 18722 - CANDIDATE hangs -987 -3201 Test read # 262 ident 560130 8285- 13109 against verified region 10115- 18722 - CANDIDATE hangs -1310 -5138 Test read # 263 ident 209989 8290- 13669 against verified region 10115- 18722 - CANDIDATE hangs -2134 -5377 Test read # 264 ident 145147 8300- 14641 against verified region 10115- 18722 - CANDIDATE hangs -1801 -4114 Test read # 265 ident 46983 8312- 13916 against verified region 10115- 18722 - CANDIDATE hangs -1230 -4257 Test read # 267 ident 19206 8321- 14313 against verified region 10115- 18722 - CANDIDATE hangs -876 -3524 Test read # 269 ident 45160 8324- 13707 against verified region 10115- 18722 - CANDIDATE hangs -1619 -4869 Test read # 270 ident 679807 8331- 13594 against verified region 10115- 18722 - CANDIDATE hangs -1239 -4604 Test read # 272 ident 3101 8363- 11058 against verified region 10115- 18722 - CANDIDATE hangs -228 -6112 Test read # 274 ident 573934 8368- 11432 against verified region 10115- 18722 - CANDIDATE hangs -2140 -7633 Test read # 275 ident 621532 8399- 11514 against verified region 10115- 18722 - CANDIDATE hangs -287 -5766 Test read # 276 ident 394978 8401- 12017 against verified region 10115- 18722 - CANDIDATE hangs -2429 -7396 Test read # 278 ident 138578 8447- 13410 against verified region 10115- 18722 - CANDIDATE hangs -1396 -5041 Test read # 279 ident 598557 8454- 10689 against verified region 10115- 18722 - CANDIDATE hangs -437 -6765 Test read # 280 ident 379937 8461- 14707 against verified region 10115- 18722 - CANDIDATE hangs -915 -3235 Test read # 281 ident 679810 8462- 15117 against verified region 10115- 18722 - CANDIDATE hangs -1801 -3776 Test read # 282 ident 574269 8495- 14655 against verified region 10115- 18722 - CANDIDATE hangs -3480 -5955 Test read # 283 ident 84119 8528- 13486 against verified region 10115- 18722 - CANDIDATE hangs -1840 -5494 Test read # 284 ident 24743 8532- 12274 against verified region 10115- 18722 - CANDIDATE hangs -1057 -5897 Test read # 285 ident 593636 8547- 15027 against verified region 10115- 18722 - CANDIDATE hangs -130 -2298 Test read # 286 ident 593635 8548- 15023 against verified region 10115- 18722 - CANDIDATE hangs -2145 -4294 Test read # 288 ident 448242 8555- 14401 against verified region 10115- 18722 - CANDIDATE hangs 271 -2518 Test read # 289 ident 300264 8558- 14853 against verified region 10115- 18722 - CANDIDATE hangs -1729 -4060 Test read # 291 ident 456962 8575- 14921 against verified region 10115- 18722 - CANDIDATE hangs -1547 -3814 Test read # 292 ident 640042 8575- 14210 against verified region 10115- 18722 - CANDIDATE hangs -668 -3637 Test read # 294 ident 608332 8633- 14459 against verified region 10115- 18722 - CANDIDATE hangs -1383 -4180 Test read # 295 ident 378514 8642- 10635 against verified region 10115- 18722 - CANDIDATE hangs -789 -7348 Test read # 296 ident 599515 8664- 11777 against verified region 10115- 18722 - CANDIDATE hangs -1024 -6471 Test read # 298 ident 409028 8674- 11177 against verified region 10115- 18722 - CANDIDATE hangs -184 -6236 Test read # 300 ident 341021 8688- 16732 against verified region 10115- 18722 - CANDIDATE hangs -2197 -2849 Test read # 301 ident 147058 8705- 15102 against verified region 10115- 18722 - CANDIDATE hangs -4363 -6583 Test read # 302 ident 711868 8719- 14686 against verified region 10115- 18722 - CANDIDATE hangs -656 -3326 Test read # 303 ident 597201 8731- 15978 against verified region 10115- 18722 - CANDIDATE hangs -3439 -4771 Test read # 304 ident 103418 8738- 15079 against verified region 10115- 18722 - CANDIDATE hangs -5425 -7692 Test read # 305 ident 697810 8743- 15093 against verified region 10115- 18722 - CANDIDATE hangs -3362 -5624 Test read # 306 ident 37056 8774- 15756 against verified region 10115- 18722 - CANDIDATE hangs -1539 -3204 Test read # 307 ident 138579 8780- 13766 against verified region 10115- 18722 - CANDIDATE hangs -76 -3692 Test read # 310 ident 171000 8824- 14304 against verified region 10115- 18722 - CANDIDATE hangs 878 -2261 Test read # 314 ident 198552 8881- 15485 against verified region 10115- 18722 - CANDIDATE hangs -3497 -5518 Test read # 316 ident 292641 8891- 10578 against verified region 10115- 18722 - CANDIDATE hangs 1481 -5355 Test read # 317 ident 443236 8892- 10975 against verified region 10115- 18722 - CANDIDATE hangs 1177 -5280 Test read # 318 ident 679811 8905- 15556 against verified region 10115- 18722 - CANDIDATE hangs -2818 -4785 Test read # 320 ident 270560 8936- 12102 against verified region 10115- 18722 - CANDIDATE hangs 1329 -4081 Test read # 321 ident 383474 9054- 14890 against verified region 10115- 18722 - CANDIDATE hangs -2057 -4841 Test read # 322 ident 515960 9083- 13090 against verified region 10115- 18722 - CANDIDATE hangs -2389 -6971 Test read # 323 ident 385775 9084- 12454 against verified region 10115- 18722 - CANDIDATE hangs -261 -5467 Test read # 324 ident 19205 9088- 15036 against verified region 10115- 18722 - CANDIDATE hangs -1023 -3688 Test read # 326 ident 705282 9114- 14197 against verified region 10115- 18722 - CANDIDATE hangs -1295 -4846 Test read # 327 ident 513909 9147- 12429 against verified region 10115- 18722 - CANDIDATE hangs -891 -6178 Test read # 328 ident 21258 9166- 13991 against verified region 10115- 18722 - CANDIDATE hangs -1323 -5105 Test read # 329 ident 371778 9167- 13337 against verified region 10115- 18722 - CANDIDATE hangs -552 -4998 Test read # 330 ident 474956 9190- 12512 against verified region 10115- 18722 - CANDIDATE hangs 262 -4996 Test read # 331 ident 593631 9203- 13184 against verified region 10115- 18722 - CANDIDATE hangs -689 -5295 Test read # 332 ident 697809 9205- 15538 against verified region 10115- 18722 - CANDIDATE hangs -1036 -3274 Test read # 334 ident 126393 9227- 16335 against verified region 10115- 18722 - CANDIDATE hangs -1781 -3252 Test read # 335 ident 536341 9236- 11282 against verified region 10115- 18722 - CANDIDATE hangs 3002 -3518 Test read # 336 ident 235284 9262- 11714 against verified region 10115- 18722 - CANDIDATE hangs -822 -6915 Test read # 337 ident 422535 9291- 14482 against verified region 10115- 18722 - CANDIDATE hangs -1566 -4975 Test read # 338 ident 511576 9298- 16082 against verified region 10115- 18722 - CANDIDATE hangs -1453 -3251 Test read # 339 ident 704609 9323- 13214 against verified region 10115- 18722 - CANDIDATE hangs -656 -5344 Test read # 340 ident 67150 9328- 15907 against verified region 10115- 18722 - CANDIDATE hangs -1935 -3961 Test read # 342 ident 574268 9344- 15476 against verified region 10115- 18722 - CANDIDATE hangs -625 -3116 Test read # 343 ident 522974 9350- 13457 against verified region 10115- 18722 - CANDIDATE hangs -208 -4689 Test read # 345 ident 485211 9375- 15433 against verified region 10115- 18722 - CANDIDATE hangs -597 -3105 Test read # 347 ident 173285 9385- 11776 against verified region 10115- 18722 - CANDIDATE hangs -1205 -7357 Test read # 348 ident 157730 9385- 11437 against verified region 10115- 18722 - CANDIDATE hangs -320 -6807 Test read # 349 ident 340875 9389- 12837 against verified region 10115- 18722 - CANDIDATE hangs -927 -6053 Test read # 351 ident 462685 9404- 13152 against verified region 10115- 18722 - CANDIDATE hangs -2812 -7639 Test read # 352 ident 109833 9413- 17058 against verified region 10115- 18722 - CANDIDATE hangs -4409 -5404 Test read # 353 ident 521814 9413- 13452 against verified region 10115- 18722 - CANDIDATE hangs -2336 -6887 Test read # 354 ident 621177 9420- 13512 against verified region 10115- 18722 - CANDIDATE hangs -1366 -5865 Test read # 356 ident 179784 9464- 12929 against verified region 10115- 18722 - CANDIDATE hangs -1025 -6135 Test read # 357 ident 68509 9495- 14666 against verified region 10115- 18722 - CANDIDATE hangs -320 -3766 Test read # 358 ident 697811 9520- 15851 against verified region 10115- 18722 - CANDIDATE hangs -3205 -5457 Test read # 359 ident 244240 9534- 13159 against verified region 10115- 18722 - CANDIDATE hangs -2911 -7860 Test read # 361 ident 220314 9586- 14065 against verified region 10115- 18722 - CANDIDATE hangs -309 -4424 Test read # 362 ident 702832 9590- 11239 against verified region 10115- 18722 - CANDIDATE hangs 1562 -5321 Test read # 363 ident 146847 9595- 12300 against verified region 10115- 18722 - CANDIDATE hangs -873 -6720 Test read # 364 ident 54446 9599- 17168 against verified region 10115- 18722 - CANDIDATE hangs -2376 -3484 Test read # 365 ident 79337 9661- 15613 against verified region 10115- 18722 - CANDIDATE hangs -1238 -3862 Test read # 366 ident 605339 9677- 14420 against verified region 10115- 18722 - CANDIDATE hangs -1491 -5354 Test read # 367 ident 404336 9692- 14059 against verified region 10115- 18722 - CANDIDATE hangs -135 -4362 Test read # 368 ident 88445 9693- 15929 against verified region 10115- 18722 - CANDIDATE hangs -1041 -3399 Test read # 371 ident 262194 9738- 16055 against verified region 10115- 18722 - CANDIDATE hangs -1053 -3291 Test read # 372 ident 542492 9760- 13263 against verified region 10115- 18722 - CANDIDATE hangs -169 -5246 Test read # 375 ident 588089 9789- 12590 against verified region 10115- 18722 - CANDIDATE hangs 2434 -3321 Test read # 376 ident 330754 9797- 17598 against verified region 10115- 18722 - CANDIDATE hangs -2849 -3656 Test read # 379 ident 546987 9856- 13872 against verified region 10115- 18722 - CANDIDATE hangs -576 -5150 Test read # 382 ident 608333 9903- 12097 against verified region 10115- 18722 - CANDIDATE hangs -844 -7193 Test read # 385 ident 379939 9941- 16841 against verified region 10115- 18722 - CANDIDATE hangs -1515 -3156 Test read # 387 ident 398619 9969- 12610 against verified region 10115- 18722 - CANDIDATE hangs -923 -6833 Test read # 388 ident 614550 9974- 12296 against verified region 10115- 18722 - CANDIDATE hangs 440 -5784 Test read # 389 ident 195550 9975- 14496 against verified region 10115- 18722 - CANDIDATE hangs 209 -3851 Test read # 390 ident 548890 9977- 12800 against verified region 10115- 18722 - CANDIDATE hangs 505 -5234 Test read # 391 ident 641269 9988- 16847 against verified region 10115- 18722 - CANDIDATE hangs -1965 -3658 Test read # 392 ident 290384 9998- 16145 against verified region 10115- 18722 - CANDIDATE hangs -663 -3162 Test read # 393 ident 180602 10000- 12710 against verified region 10115- 18722 - CANDIDATE hangs -669 -6517 Test read # 394 ident 313299 10016- 13131 against verified region 10115- 18722 - CANDIDATE hangs 976 -4492 Test read # 397 ident 485385 10026- 15269 against verified region 10115- 18722 - CANDIDATE hangs -302 -3630 Test read # 398 ident 647550 10033- 15996 against verified region 10115- 18722 - CANDIDATE hangs -2254 -4893 Test read # 400 ident 436323 10068- 13464 against verified region 10115- 18722 - CANDIDATE hangs -1267 -6440 Test read # 402 ident 63378 10101- 14088 against verified region 10115- 18722 - CANDIDATE hangs -2709 -7300 Test read # 405 ident 567229 10150- 11822 against verified region 10115- 18722 - CANDIDATE hangs 1100 -5775 Test read # 407 ident 195026 10174- 11505 against verified region 10115- 18722 - CANDIDATE hangs 2234 -4953 Test read # 410 ident 217982 10223- 14824 against verified region 10115- 18722 - CANDIDATE hangs -532 -4503 Test read # 411 ident 21257 10233- 12455 against verified region 10115- 18722 - CANDIDATE hangs -980 -7300 Test read # 413 ident 614715 10273- 15648 against verified region 10115- 18722 - CANDIDATE hangs -581 -3838 Test read # 419 ident 81757 10351- 16936 against verified region 10115- 18722 - CANDIDATE hangs -906 -2917 Test read # 421 ident 680686 10367- 12017 against verified region 10115- 18722 - CANDIDATE hangs 3285 -3581 Test read # 422 ident 45161 10370- 12746 against verified region 10115- 18722 - CANDIDATE hangs -573 -6766 Test read # 427 ident 575179 10481- 11743 against verified region 10115- 18722 - CANDIDATE hangs 2090 -5167 Test read # 428 ident 324875 10498- 14661 against verified region 10115- 18722 - CANDIDATE hangs -1244 -5674 Test read # 429 ident 471095 10523- 12686 against verified region 10115- 18722 - CANDIDATE hangs -199 -6569 Test read # 430 ident 82054 10525- 13060 against verified region 10115- 18722 - CANDIDATE hangs 731 -5308 Test read # 432 ident 574271 10603- 16680 against verified region 10115- 18722 - CANDIDATE hangs -1468 -3981 Test read # 433 ident 44260 10616- 13190 against verified region 10115- 18722 - CANDIDATE hangs -420 -6391 Test read # 434 ident 656703 10616- 12143 against verified region 10115- 18722 - CANDIDATE hangs 1368 -5633 Test read # 435 ident 140214 10618- 11915 against verified region 10115- 18722 - CANDIDATE hangs 1038 -6204 Test read # 438 ident 378513 10702- 12692 against verified region 10115- 18722 - CANDIDATE hangs -843 -7397 Test read # 441 ident 175657 10749- 14153 against verified region 10115- 18722 - CANDIDATE hangs 1951 -3200 Test read # 442 ident 653532 10764- 16737 against verified region 10115- 18722 - CANDIDATE hangs -1483 -4074 Test read # 443 ident 313633 10766- 14493 against verified region 10115- 18722 - CANDIDATE hangs -1028 -5846 Test read # 444 ident 340321 10767- 13135 against verified region 10115- 18722 - CANDIDATE hangs -815 -6995 Test read # 445 ident 290382 10776- 16853 against verified region 10115- 18722 - CANDIDATE hangs -2000 -4516 Test read # 447 ident 311725 10829- 12142 against verified region 10115- 18722 - CANDIDATE hangs 1708 -5497 Test read # 448 ident 67149 10835- 15570 against verified region 10115- 18722 - CANDIDATE hangs -1002 -4872 Test read # 450 ident 244549 10898- 11992 against verified region 10115- 18722 - CANDIDATE hangs -231 -7655 Test read # 451 ident 437415 10902- 12782 against verified region 10115- 18722 - CANDIDATE hangs 1924 -4719 Test read # 455 ident 571499 10952- 13048 against verified region 10115- 18722 - CANDIDATE hangs 969 -5489 Test read # 456 ident 637408 10976- 14065 against verified region 10115- 18722 - CANDIDATE hangs 1095 -4356 Test read # 457 ident 55733 10984- 12237 against verified region 10115- 18722 - CANDIDATE hangs 1373 -5900 Test read # 458 ident 313300 10998- 15589 against verified region 10115- 18722 - CANDIDATE hangs 263 -3743 Test read # 460 ident 188683 11075- 18180 against verified region 10115- 18722 - CANDIDATE hangs -2689 -4169 Test read # 464 ident 400641 11180- 13207 against verified region 10115- 18722 - CANDIDATE hangs 360 -6166 Test read # 465 ident 304144 11184- 16009 against verified region 10115- 18722 - CANDIDATE hangs -169 -3813 Test read # 466 ident 470474 11239- 12987 against verified region 10115- 18722 - CANDIDATE hangs 1678 -5108 Test read # 467 ident 199722 11244- 14138 against verified region 10115- 18722 - CANDIDATE hangs 2412 -3229 Test read # 468 ident 404491 11281- 15331 against verified region 10115- 18722 - CANDIDATE hangs 1484 -3045 Test read # 469 ident 291121 11285- 15125 against verified region 10115- 18722 - CANDIDATE hangs -1173 -5825 Test read # 470 ident 322292 11287- 13344 against verified region 10115- 18722 - CANDIDATE hangs 464 -6029 Test read # 471 ident 283115 11333- 15059 against verified region 10115- 18722 - CANDIDATE hangs -455 -5330 Test read # 472 ident 80185 11434- 12662 against verified region 10115- 18722 - CANDIDATE hangs -379 -7672 Test read # 473 ident 127954 11440- 14476 against verified region 10115- 18722 - CANDIDATE hangs 1057 -4473 Test read # 474 ident 290383 11457- 17103 against verified region 10115- 18722 - CANDIDATE hangs -7 -3001 Test read # 480 ident 340319 11655- 15789 against verified region 10115- 18722 - CANDIDATE hangs 1222 -3158 Test read # 482 ident 690604 11808- 13823 against verified region 10115- 18722 - CANDIDATE hangs 3462 -3068 Test read # 484 ident 89115 11851- 15900 against verified region 10115- 18722 - CANDIDATE hangs 858 -3671 Test read # 488 ident 257683 11964- 14548 against verified region 10115- 18722 - CANDIDATE hangs 2726 -3256 Test read # 492 ident 293889 12185- 15562 against verified region 10115- 18722 - CANDIDATE hangs -70 -5217 Found appropriate intersecting read. createUnitigs()-- read 348202 place 1 edgeTo tig 113178 reads # 0 653095- 293889 verified 10115- 18722 position 10115- 18722 covered 0- 6321 BREAK at pos 18058 read 528895 isLow 0 sim 1.0000 Scan reads from #94 to #94 for low coordinate in verified region 6510-13266 Test read # 94 ident 645904 6510- 13296 against verified region 6510- 13266 Failed to find appropriate intersecting read. createUnitigs()-- read 348202 place 2 edgeTo tig 113178 reads # 94 645904- 645904 verified 13266- 6510 position 13266- 4743 covered 0- 6724 NO_OVERLAPS Scan reads from #509 to #509 for low coordinate in verified region 13742-15076 Test read # 509 ident 697812 13742- 15076 against verified region 13742- 15076 Failed to find appropriate intersecting read. createUnitigs()-- read 348202 place 3 edgeTo tig 113178 reads # 509 697812- 697812 verified 15076- 13742 position 17731- 9230 covered 2655- 3979 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #72 for low coordinate in verified region 0-6375 Test read # 0 ident 176884 0- 6256 against verified region 0- 6375 Test read # 1 ident 176885 220- 6479 against verified region 0- 6375 - CANDIDATE hangs -1038 -3374 - SAVED Test read # 2 ident 574267 858- 6983 against verified region 0- 6375 - CANDIDATE hangs -625 -3117 Test read # 3 ident 322291 948- 7354 against verified region 0- 6375 - CANDIDATE hangs -1635 -3856 Test read # 5 ident 318714 1147- 8618 against verified region 0- 6375 - CANDIDATE hangs -2760 -3945 Test read # 6 ident 435489 1151- 6235 against verified region 0- 6375 - CANDIDATE hangs -3273 -6786 Test read # 7 ident 588091 1373- 6705 against verified region 0- 6375 - CANDIDATE hangs -37 -3319 Test read # 8 ident 574265 1434- 7562 against verified region 0- 6375 - CANDIDATE hangs -3312 -5819 Test read # 9 ident 404489 1482- 7939 against verified region 0- 6375 - CANDIDATE hangs -2471 -4662 Test read # 10 ident 181773 1556- 7869 against verified region 0- 6375 - CANDIDATE hangs -1178 -3579 Test read # 11 ident 124528 1699- 7314 against verified region 0- 6375 - CANDIDATE hangs -2616 -5621 Test read # 12 ident 224385 1726- 7754 against verified region 0- 6375 - CANDIDATE hangs -1139 -3692 Test read # 13 ident 209988 1783- 7154 against verified region 0- 6375 - CANDIDATE hangs -1622 -4875 Test read # 14 ident 422536 1918- 6682 against verified region 0- 6375 - CANDIDATE hangs -4126 -7974 Test read # 15 ident 545310 2126- 6895 against verified region 0- 6375 - CANDIDATE hangs -3303 -7141 Test read # 16 ident 404485 2157- 6250 against verified region 0- 6375 - CANDIDATE hangs -294 -4803 Test read # 17 ident 181775 2189- 8415 against verified region 0- 6375 - CANDIDATE hangs -2678 -5090 Test read # 18 ident 475220 2226- 7361 against verified region 0- 6375 - CANDIDATE hangs -129 -3540 Test read # 19 ident 181776 2230- 8437 against verified region 0- 6375 - CANDIDATE hangs -1652 -4078 Test read # 21 ident 230029 2325- 7820 against verified region 0- 6375 - CANDIDATE hangs -2582 -5721 Test read # 22 ident 94737 2361- 6884 against verified region 0- 6375 - CANDIDATE hangs -760 -4844 Test read # 23 ident 400963 2401- 7259 against verified region 0- 6375 - CANDIDATE hangs -3774 -7531 Test read # 24 ident 209992 2419- 7795 against verified region 0- 6375 - CANDIDATE hangs -948 -4195 Test read # 27 ident 230031 2891- 8483 against verified region 0- 6375 - CANDIDATE hangs -1459 -4464 Test read # 29 ident 230030 3060- 8696 against verified region 0- 6375 - CANDIDATE hangs -2476 -5480 Test read # 30 ident 202854 3072- 7461 against verified region 0- 6375 - CANDIDATE hangs -731 -4962 Test read # 31 ident 647549 3098- 8430 against verified region 0- 6375 - CANDIDATE hangs -3008 -6307 Test read # 32 ident 343228 3125- 7957 against verified region 0- 6375 - CANDIDATE hangs -1151 -4937 Test read # 33 ident 722523 3238- 7830 against verified region 0- 6375 - CANDIDATE hangs -1896 -5945 Test read # 34 ident 156695 3275- 8976 against verified region 0- 6375 - CANDIDATE hangs -2701 -5627 Test read # 35 ident 106694 3338- 6644 against verified region 0- 6375 - CANDIDATE hangs -878 -6172 Test read # 37 ident 586618 3517- 8244 against verified region 0- 6375 - CANDIDATE hangs -3163 -7060 Test read # 38 ident 215166 3650- 8908 against verified region 0- 6375 - CANDIDATE hangs -885 -4305 Test read # 39 ident 113311 3713- 7382 against verified region 0- 6375 - CANDIDATE hangs -731 -5661 Test read # 40 ident 52542 3720- 7603 against verified region 0- 6375 - CANDIDATE hangs -812 -5537 Test read # 41 ident 70665 3721- 5455 against verified region 0- 6375 - CANDIDATE hangs 881 -5936 Test read # 42 ident 448246 3726- 7892 against verified region 0- 6375 - CANDIDATE hangs -361 -4796 Test read # 43 ident 37058 3787- 7608 against verified region 0- 6375 - CANDIDATE hangs -1135 -5934 Test read # 44 ident 68514 3812- 7479 against verified region 0- 6375 - CANDIDATE hangs -2005 -6935 Test read # 45 ident 221572 3879- 8642 against verified region 0- 6375 - CANDIDATE hangs 537 -3316 Test read # 46 ident 202587 4124- 8034 against verified region 0- 6375 - CANDIDATE hangs -674 -5347 Test read # 47 ident 254870 4124- 7623 against verified region 0- 6375 - CANDIDATE hangs -709 -5801 Test read # 49 ident 254867 4157- 7491 against verified region 0- 6375 - CANDIDATE hangs -635 -5896 Test read # 50 ident 664939 4171- 7143 against verified region 0- 6375 - CANDIDATE hangs -156 -5771 Test read # 51 ident 157008 4206- 5965 against verified region 0- 6375 - CANDIDATE hangs -331 -7120 Test read # 52 ident 250253 4533- 7304 against verified region 0- 6375 - CANDIDATE hangs -2073 -7860 Test read # 53 ident 166018 4538- 8761 against verified region 0- 6375 - CANDIDATE hangs -2400 -6784 Test read # 54 ident 673861 4558- 7721 against verified region 0- 6375 - CANDIDATE hangs -463 -5865 Test read # 55 ident 648860 4571- 7743 against verified region 0- 6375 - CANDIDATE hangs -1365 -6776 Test read # 56 ident 461172 4660- 8070 against verified region 0- 6375 - CANDIDATE hangs -1007 -6186 Test read # 57 ident 47134 4700- 6053 against verified region 0- 6375 - CANDIDATE hangs 947 -6239 Test read # 58 ident 611845 4761- 8001 against verified region 0- 6375 - CANDIDATE hangs 697 -4650 Test read # 59 ident 652162 4857- 7834 against verified region 0- 6375 - CANDIDATE hangs 1670 -3931 Test read # 60 ident 422533 4948- 7924 against verified region 0- 6375 - CANDIDATE hangs -327 -5920 Test read # 62 ident 680420 5513- 8016 against verified region 0- 6375 - CANDIDATE hangs -1045 -7091 Test read # 63 ident 582742 5560- 7707 against verified region 0- 6375 - CANDIDATE hangs 1341 -5095 Test read # 64 ident 483775 5832- 7568 against verified region 0- 6375 - CANDIDATE hangs -181 -6977 Test read # 65 ident 274584 5858- 7551 against verified region 0- 6375 - CANDIDATE hangs 1508 -5363 Test read # 66 ident 483770 6048- 7732 against verified region 0- 6375 - CANDIDATE hangs -205 -7049 Test read # 72 ident 274585 6746- 8293 against verified region 0- 6375 - CANDIDATE hangs -523 -7504 Found appropriate intersecting read. createUnitigs()-- read 348202 place 4 edgeTo tig 113336 reads # 0 176884- 274585 verified 6375- 0 position 6375- -2225 covered 0- 5374 BREAK at pos 220 read 176885 isLow 1 sim 0.8654 Scan reads from #0 to #2 for low coordinate in verified region 0-3152 Test read # 0 ident 102946 0- 7042 against verified region 0- 3152 Test read # 1 ident 102943 36- 7121 against verified region 0- 3152 - CANDIDATE hangs -3927 -5487 - SAVED Test read # 2 ident 705863 954- 7944 against verified region 0- 3152 - CANDIDATE hangs -5962 -7580 Found appropriate intersecting read. createUnitigs()-- read 348202 place 5 edgeTo tig 113337 reads # 0 102946- 705863 verified 3152- 0 position 3152- -5481 covered 0- 4124 NOT_SIMILAR createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 369 len 27957 first read 510127 with 1 placements - last read 407662 with 3 placements createUnitigs()-- read 510127 place 0 edgeTo tig 369 reads # 1 62841- 335567 verified 19- 6916 position 19- 6916 covered 0- 6860 SELF createUnitigs()-- read 407662 place 0 edgeTo tig 369 reads # 32 689932- 431081 verified 23306- 27630 position 23306- 27939 covered 0- 4349 SELF EXPECTED_3' Scan reads from #34 to #34 for high coordinate in verified region 21043-22104 Test read # 34 ident 275127 21043- 22104 against verified region 21043- 22104 Failed to find appropriate intersecting read. createUnitigs()-- read 407662 place 1 edgeTo tig 1163 reads # 34 275127- 275127 verified 22104- 21043 position 23233- 18599 covered 1129- 2210 EXPECTED_3' NO_OVERLAPS Scan reads from #8 to #8 for low coordinate in verified region 2236-3303 Test read # 8 ident 537493 2236- 3303 against verified region 2236- 3303 Failed to find appropriate intersecting read. createUnitigs()-- read 407662 place 2 edgeTo tig 582868 reads # 8 537493- 537493 verified 2236- 3303 position 1118- 5746 covered 1118- 2211 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 370 len 37878 first read 71824 with 1 placements - last read 272806 with 2 placements createUnitigs()-- read 71824 place 0 edgeTo tig 370 reads # 1 71826- 72447 verified 2- 6864 position 2- 6864 covered 0- 6831 SELF createUnitigs()-- read 272806 place 0 edgeTo tig 370 reads # 30 481071- 694518 verified 32164- 37865 position 32164- 37865 covered 0- 5673 SELF Scan reads from #4 to #10 for low coordinate in verified region 1645-3865 Test read # 4 ident 243941 1645- 3863 against verified region 1645- 3865 Test read # 5 ident 43317 1645- 3843 against verified region 1645- 3865 Test read # 6 ident 199273 1647- 3861 against verified region 1645- 3865 - CANDIDATE hangs 1171 -2287 Test read # 7 ident 389364 1656- 3833 against verified region 1645- 3865 - CANDIDATE hangs 1177 -2315 Test read # 8 ident 33262 1671- 3865 against verified region 1645- 3865 - CANDIDATE hangs 1194 -2285 Test read # 9 ident 414885 2031- 3839 against verified region 1645- 3865 - CANDIDATE hangs 1560 -2312 Test read # 10 ident 299202 2059- 3863 against verified region 1645- 3865 - CANDIDATE hangs 1587 -2286 Failed to find appropriate intersecting read. createUnitigs()-- read 272806 place 1 edgeTo tig 26888 reads # 4 243941- 299202 verified 1645- 3865 position 475- 6149 covered 1167- 3388 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 372 len 57606 first read 78207 with 2 placements - last read 312659 with 1 placements createUnitigs()-- read 78207 place 0 edgeTo tig 372 reads # 1 78209- 436756 verified 8- 6293 position 8- 6293 covered 0- 6247 SELF Scan reads from #15 to #15 for high coordinate in verified region 5976-7206 Test read # 15 ident 161510 5976- 7206 against verified region 5976- 7206 Failed to find appropriate intersecting read. createUnitigs()-- read 78207 place 1 edgeTo tig 5112 reads # 15 161510- 161510 verified 5976- 7206 position 2911- 9177 covered 3065- 4276 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 312659 place 0 edgeTo tig 372 reads # 74 523515- 410475 verified 56178- 48973 position 57601- 48954 covered 1426- 8655 SELF EXPECTED_5' createUnitigs()-- tig 375 len 20756 first read 105073 with 1 placements - last read 119517 with 11 placements createUnitigs()-- read 105073 place 0 edgeTo tig 375 reads # 1 105072- 559476 verified 6266- 7 position 6266- 0 covered 0- 6244 SELF createUnitigs()-- read 119517 place 0 edgeTo tig 375 reads # 13 145603- 439410 verified 20717- 11902 position 20730- 11902 covered 29- 8746 SELF EXPECTED_5' Scan reads from #6 to #6 for high coordinate in verified region 10636-12508 Test read # 6 ident 564820 1467- 12508 against verified region 10636- 12508 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 1 edgeTo tig 2486 reads # 6 564820- 564820 verified 10636- 12508 position 10636- 19355 covered 0- 1899 NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #0 for low coordinate in verified region 0-2265 Test read # 0 ident 461692 0- 5287 against verified region 0- 2265 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 2 edgeTo tig 2931 reads # 0 461692- 461692 verified 2265- 0 position 2265- -6439 covered 0- 2307 NO_OVERLAPS Scan reads from #12 to #12 for high coordinate in verified region 2006-3152 Test read # 12 ident 612367 2006- 3152 against verified region 2006- 3152 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 3 edgeTo tig 27041 reads # 12 612367- 612367 verified 2006- 3152 position 1233- 10010 covered 773- 1888 EXPECTED_5' NO_OVERLAPS Scan reads from #51 to #51 for high coordinate in verified region 4947-6447 Test read # 51 ident 433998 4947- 6447 against verified region 4947- 6447 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 4 edgeTo tig 113196 reads # 51 433998- 433998 verified 4947- 6447 position 4076- 12858 covered 871- 2335 EXPECTED_5' NO_OVERLAPS Scan reads from #65 to #186 for high coordinate in verified region 6371-9002 Test read # 65 ident 530968 5275- 8796 against verified region 6371- 9002 - CANDIDATE hangs -1308 -6614 - SAVED Test read # 67 ident 350506 5528- 13589 against verified region 6371- 9002 Test read # 68 ident 351407 5530- 7373 against verified region 6371- 9002 - CANDIDATE hangs -3 -6942 Test read # 103 ident 135768 6359- 8557 against verified region 6371- 9002 - CANDIDATE hangs 3 -6571 Test read # 106 ident 629432 6390- 8078 against verified region 6371- 9002 - CANDIDATE hangs 645 -6469 Test read # 110 ident 341321 6420- 8651 against verified region 6371- 9002 - CANDIDATE hangs -5 -6572 Test read # 118 ident 194037 6455- 8730 against verified region 6371- 9002 - CANDIDATE hangs 3 -6501 Test read # 140 ident 414594 6553- 8611 against verified region 6371- 9002 - CANDIDATE hangs 15 -6711 Test read # 145 ident 528858 6577- 8742 against verified region 6371- 9002 - CANDIDATE hangs 3 -6609 Test read # 150 ident 131445 6611- 8848 against verified region 6371- 9002 - CANDIDATE hangs -4 -6550 Test read # 162 ident 662489 6687- 9002 against verified region 6371- 9002 Test read # 186 ident 195677 6998- 8890 against verified region 6371- 9002 - CANDIDATE hangs 421 -6480 Found appropriate intersecting read. createUnitigs()-- read 119517 place 5 edgeTo tig 113196 reads # 65 530968- 195677 verified 6371- 9002 position 6371- 15161 covered 0- 2277 BREAK at pos 8796 read 530968 isLow 0 sim 1.0000 Scan reads from #3 to #3 for high coordinate in verified region 8078-10550 Test read # 3 ident 605823 1441- 10550 against verified region 8078- 10550 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 6 edgeTo tig 113196 reads # 3 605823- 605823 verified 8078- 10550 position 8078- 17013 covered 0- 2283 NO_OVERLAPS Scan reads from #28 to #67 for high coordinate in verified region 10311-13589 Test read # 28 ident 350509 4011- 12126 against verified region 10311- 13589 - CANDIDATE hangs -5662 -6431 - SAVED Test read # 29 ident 144118 4015- 11661 against verified region 10311- 13589 - CANDIDATE hangs -5637 -6879 Test read # 43 ident 350507 4756- 12817 against verified region 10311- 13589 - CANDIDATE hangs -5655 -6450 - SAVED Test read # 51 ident 433998 4947- 6447 against verified region 10311- 13589 - CANDIDATE hangs 871 -6411 Test read # 55 ident 350508 5011- 13088 against verified region 10311- 13589 - CANDIDATE hangs -5656 -6431 - SAVED Test read # 65 ident 530968 5275- 8796 against verified region 10311- 13589 - CANDIDATE hangs -1308 -6614 Test read # 67 ident 350506 5528- 13589 against verified region 10311- 13589 Found appropriate intersecting read. createUnitigs()-- read 119517 place 7 edgeTo tig 113196 reads # 28 350509- 350506 verified 10311- 13589 position 10311- 19179 covered 0- 2321 BREAK at pos 13088 read 350508 isLow 0 sim 0.6052 Scan reads from #0 to #0 for low coordinate in verified region 0-2255 Test read # 0 ident 245018 0- 5875 against verified region 0- 2255 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 8 edgeTo tig 113485 reads # 0 245018- 245018 verified 2255- 0 position 2255- -6486 covered 0- 2260 NO_OVERLAPS NOT_SIMILAR Scan reads from #1 to #1 for high coordinate in verified region 6307-8090 Test read # 1 ident 678430 1912- 8090 against verified region 6307- 8090 Failed to find appropriate intersecting read. createUnitigs()-- read 119517 place 9 edgeTo tig 113988 reads # 1 678430- 678430 verified 6307- 8090 position 6307- 15066 covered 0- 1770 NO_OVERLAPS Scan reads from #0 to #4 for low coordinate in verified region 0-2041 Test read # 0 ident 89747 0- 8029 against verified region 0- 2041 Test read # 1 ident 89750 3- 8030 against verified region 0- 2041 - CANDIDATE hangs -5995 -6684 - SAVED Test read # 2 ident 89748 3- 8028 against verified region 0- 2041 - CANDIDATE hangs -5985 -6685 Test read # 3 ident 89751 3- 7993 against verified region 0- 2041 - CANDIDATE hangs -5957 -6690 Test read # 4 ident 89749 9- 8005 against verified region 0- 2041 - CANDIDATE hangs -5949 -6691 Found appropriate intersecting read. createUnitigs()-- read 119517 place 10 edgeTo tig 582262 reads # 0 89747- 89749 verified 2041- 0 position 2041- -6683 covered 0- 2062 NOT_SIMILAR createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 381 len 24135 first read 125520 with 1 placements - last read 700522 with 1 placements createUnitigs()-- read 125520 place 0 edgeTo tig 381 reads # 1 125521- 125519 verified 17- 3903 position 4- 3903 covered 0- 3896 SELF createUnitigs()-- read 700522 place 0 edgeTo tig 381 reads # 27 473630- 505776 verified 20589- 23758 position 20589- 24138 covered 0- 3104 SELF EXPECTED_3' createUnitigs()-- tig 383 len 42996 first read 28983 with 1 placements - last read 113355 with 1 placements createUnitigs()-- read 28983 place 0 edgeTo tig 383 reads # 1 88739- 112215 verified 13173- 3193 position 13173- -1 covered 0- 9925 SELF EXPECTED_3' createUnitigs()-- read 113355 place 0 edgeTo tig 383 reads # 49 86047- 518334 verified 42974- 39707 position 42994- 39707 covered 0- 3245 SELF createUnitigs()-- tig 389 len 28537 first read 288901 with 2 placements - last read 210867 with 1 placements createUnitigs()-- read 288901 place 0 edgeTo tig 389 reads # 1 288903- 279975 verified 8417- 66 position 8417- 42 covered 0- 8297 SELF EXPECTED_3' Scan reads from #35 to #35 for low coordinate in verified region 29498-30810 Test read # 35 ident 718996 29498- 30810 against verified region 29498- 30810 Failed to find appropriate intersecting read. createUnitigs()-- read 288901 place 1 edgeTo tig 2411 reads # 35 718996- 718996 verified 29498- 30810 position 25621- 33953 covered 3877- 5198 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 210867 place 0 edgeTo tig 389 reads # 27 717566- 578707 verified 24032- 28322 position 24032- 28533 covered 0- 4272 SELF EXPECTED_3' createUnitigs()-- tig 390 len 26597 first read 221344 with 1 placements - last read 118248 with 1 placements createUnitigs()-- read 221344 place 0 edgeTo tig 390 reads # 1 221341- 221342 verified 410- 4738 position -3- 4738 covered 429- 4662 SELF EXPECTED_5' createUnitigs()-- read 118248 place 0 edgeTo tig 390 reads # 29 381667- 118249 verified 21872- 17226 position 26597- 17226 covered 4762- 9345 SELF EXPECTED_5' createUnitigs()-- tig 394 len 40548 first read 625279 with 1 placements - last read 253534 with 1 placements createUnitigs()-- read 625279 place 0 edgeTo tig 394 reads # 1 625280- 546074 verified 3- 8088 position -4- 8088 covered 1- 8027 SELF EXPECTED_5' createUnitigs()-- read 253534 place 0 edgeTo tig 394 reads # 37 645010- 102514 verified 36645- 40525 position 36645- 40549 covered 0- 3828 SELF EXPECTED_3' createUnitigs()-- tig 396 len 12449 first read 360149 with 5 placements - last read 118838 with 1 placements Scan reads from #53 to #174 for high coordinate in verified region 11088-13005 Test read # 53 ident 100147 3347- 12494 against verified region 11088- 13005 - CANDIDATE hangs 4825 7609 - SAVED Test read # 55 ident 100148 3385- 11888 against verified region 11088- 13005 - CANDIDATE hangs 5444 7570 Test read # 68 ident 234006 4297- 11665 against verified region 11088- 13005 - CANDIDATE hangs 5666 6682 Test read # 93 ident 495573 4806- 13005 against verified region 11088- 13005 Test read # 96 ident 142480 4849- 12928 against verified region 11088- 13005 - CANDIDATE hangs 4420 6119 - SAVED Test read # 101 ident 110628 5259- 12921 against verified region 11088- 13005 - CANDIDATE hangs 4430 5742 Test read # 112 ident 44894 5989- 12972 against verified region 11088- 13005 - CANDIDATE hangs 4413 5052 - SAVED Test read # 118 ident 218624 6526- 11900 against verified region 11088- 13005 - CANDIDATE hangs 5430 4501 Test read # 119 ident 234007 7036- 11664 against verified region 11088- 13005 - CANDIDATE hangs 5660 3988 Test read # 123 ident 281101 7472- 12925 against verified region 11088- 13005 - CANDIDATE hangs 4420 3556 Test read # 125 ident 19778 7484- 12954 against verified region 11088- 13005 - CANDIDATE hangs 4419 3589 Test read # 130 ident 19779 8328- 12941 against verified region 11088- 13005 - CANDIDATE hangs 4419 2749 Test read # 131 ident 24210 8415- 12934 against verified region 11088- 13005 - CANDIDATE hangs 4439 2702 Test read # 132 ident 149878 8447- 12943 against verified region 11088- 13005 - CANDIDATE hangs 4420 2632 Test read # 133 ident 193055 8478- 12875 against verified region 11088- 13005 - CANDIDATE hangs 4511 2685 Test read # 135 ident 191958 8522- 12662 against verified region 11088- 13005 - CANDIDATE hangs 4692 2569 Test read # 136 ident 554168 8565- 12939 against verified region 11088- 13005 - CANDIDATE hangs 4421 2534 Test read # 138 ident 409936 8692- 12933 against verified region 11088- 13005 - CANDIDATE hangs 4449 2423 Test read # 139 ident 81470 8845- 12949 against verified region 11088- 13005 - CANDIDATE hangs 4413 2250 Test read # 140 ident 254683 8848- 12927 against verified region 11088- 13005 - CANDIDATE hangs 4420 2240 Test read # 141 ident 158305 8922- 12912 against verified region 11088- 13005 - CANDIDATE hangs 4449 2175 Test read # 143 ident 537144 9217- 12917 against verified region 11088- 13005 - CANDIDATE hangs 4431 1872 Test read # 147 ident 134799 9366- 12930 against verified region 11088- 13005 - CANDIDATE hangs 4427 1754 Test read # 148 ident 649242 9484- 12802 against verified region 11088- 13005 - CANDIDATE hangs 4541 1602 Test read # 149 ident 25375 9574- 12965 against verified region 11088- 13005 - CANDIDATE hangs 4396 1542 Test read # 150 ident 572601 9635- 12695 against verified region 11088- 13005 - CANDIDATE hangs 4659 1476 Test read # 151 ident 185998 9638- 12390 against verified region 11088- 13005 - CANDIDATE hangs 4939 1467 Test read # 152 ident 157121 9671- 12704 against verified region 11088- 13005 - CANDIDATE hangs 4652 1432 Test read # 153 ident 642503 9954- 12917 against verified region 11088- 13005 - CANDIDATE hangs 4440 1169 Test read # 154 ident 208410 9955- 12901 against verified region 11088- 13005 - CANDIDATE hangs 4455 1161 Test read # 156 ident 123415 9981- 12881 against verified region 11088- 13005 - CANDIDATE hangs 4473 1153 Test read # 159 ident 208823 10063- 12942 against verified region 11088- 13005 - CANDIDATE hangs 4419 1064 Test read # 161 ident 302845 10116- 12665 against verified region 11088- 13005 - CANDIDATE hangs 4699 1029 Test read # 162 ident 642504 10179- 12927 against verified region 11088- 13005 - CANDIDATE hangs 4422 925 Test read # 163 ident 669907 10276- 12923 against verified region 11088- 13005 - CANDIDATE hangs 4419 850 Test read # 164 ident 140100 10465- 12931 against verified region 11088- 13005 - CANDIDATE hangs 4426 672 Test read # 165 ident 99379 10627- 12815 against verified region 11088- 13005 - CANDIDATE hangs 4554 519 Test read # 166 ident 668569 10641- 11923 against verified region 11088- 13005 - CANDIDATE hangs 5419 492 Test read # 167 ident 294924 11014- 12619 against verified region 11088- 13005 - CANDIDATE hangs 4731 124 Test read # 169 ident 436136 11169- 12793 against verified region 11088- 13005 - CANDIDATE hangs 4571 -29 Test read # 170 ident 323052 11183- 12941 against verified region 11088- 13005 - CANDIDATE hangs 4420 -43 Test read # 172 ident 675543 11735- 12939 against verified region 11088- 13005 - CANDIDATE hangs 4421 -579 Test read # 174 ident 423644 11870- 12897 against verified region 11088- 13005 - CANDIDATE hangs 4462 -707 Found appropriate intersecting read. createUnitigs()-- read 360149 place 0 edgeTo tig 306 reads # 53 100147- 423644 verified 13005- 11088 position 17353- 11088 covered 4336- 6177 BREAK at pos 12972 read 44894 isLow 0 sim 1.0000 createUnitigs()-- read 360149 place 1 edgeTo tig 396 reads # 1 360147- 16843 verified 6208- 6 position 6208- 0 covered 0- 6177 SELF Scan reads from #10 to #25 for low coordinate in verified region 11463-13275 Test read # 10 ident 44895 11463- 18404 against verified region 11463- 13275 Test read # 11 ident 365738 11467- 18843 against verified region 11463- 13275 - CANDIDATE hangs 4403 5555 - SAVED Test read # 12 ident 372548 11478- 16812 against verified region 11463- 13275 - CANDIDATE hangs 4413 3538 Test read # 13 ident 237463 11482- 18634 against verified region 11463- 13275 - CANDIDATE hangs 4417 5349 Test read # 14 ident 464957 11485- 14887 against verified region 11463- 13275 - CANDIDATE hangs 4418 1621 Test read # 15 ident 374678 11487- 16638 against verified region 11463- 13275 - CANDIDATE hangs 4420 3368 Test read # 16 ident 535740 11487- 16235 against verified region 11463- 13275 - CANDIDATE hangs 4421 2974 Test read # 17 ident 541972 11488- 18071 against verified region 11463- 13275 - CANDIDATE hangs 4420 4789 Test read # 18 ident 208876 11488- 17616 against verified region 11463- 13275 - CANDIDATE hangs 4417 4322 Test read # 19 ident 675544 11488- 17605 against verified region 11463- 13275 - CANDIDATE hangs 4421 4329 Test read # 20 ident 423395 11489- 17801 against verified region 11463- 13275 - CANDIDATE hangs 4420 4510 Test read # 21 ident 423394 11489- 17789 against verified region 11463- 13275 - CANDIDATE hangs 4421 4508 Test read # 22 ident 637347 11491- 16246 against verified region 11463- 13275 - CANDIDATE hangs 4422 2971 Test read # 23 ident 372551 11492- 16862 against verified region 11463- 13275 - CANDIDATE hangs 4424 3586 Test read # 24 ident 19777 11493- 16984 against verified region 11463- 13275 - CANDIDATE hangs 4429 3728 Test read # 25 ident 538403 11494- 15703 against verified region 11463- 13275 - CANDIDATE hangs 4425 2432 Found appropriate intersecting read. createUnitigs()-- read 360149 place 2 edgeTo tig 471 reads # 10 44895- 538403 verified 11463- 13275 position 7066- 13275 covered 4403- 6177 BREAK at pos 11467 read 365738 isLow 1 sim 1.0000 Scan reads from #1 to #9 for high coordinate in verified region 7811-9580 Test read # 1 ident 365739 2284- 9580 against verified region 7811- 9580 Test read # 2 ident 337037 2289- 9567 against verified region 7811- 9580 - CANDIDATE hangs 4411 5530 - SAVED Test read # 5 ident 454337 4099- 8429 against verified region 7811- 9580 - CANDIDATE hangs 5566 3711 Test read # 6 ident 372552 4276- 9366 against verified region 7811- 9580 - CANDIDATE hangs 4628 3540 Test read # 8 ident 204969 4853- 9554 against verified region 7811- 9580 - CANDIDATE hangs 4424 2961 Test read # 9 ident 105463 5548- 9436 against verified region 7811- 9580 - CANDIDATE hangs 4561 2266 Found appropriate intersecting read. createUnitigs()-- read 360149 place 3 edgeTo tig 471 reads # 1 365739- 105463 verified 9580- 7811 position 13988- 7811 covered 4407- 6177 NOT_SIMILAR Scan reads from #230 to #305 for high coordinate in verified region 31620-33446 Test read # 230 ident 156595 18835- 33390 against verified region 31620- 33446 - CANDIDATE hangs 4417 12738 - SAVED Test read # 255 ident 100939 21335- 33390 against verified region 31620- 33446 - CANDIDATE hangs 4416 10273 Test read # 256 ident 107887 21353- 33395 against verified region 31620- 33446 - CANDIDATE hangs 4419 10263 - SAVED Test read # 257 ident 511949 21387- 32636 against verified region 31620- 33446 - CANDIDATE hangs 5184 10236 Test read # 275 ident 140953 22641- 32434 against verified region 31620- 33446 - CANDIDATE hangs 5382 8979 Test read # 280 ident 239393 22898- 33391 against verified region 31620- 33446 - CANDIDATE hangs 4420 8717 Test read # 281 ident 81471 23513- 33402 against verified region 31620- 33446 - CANDIDATE hangs 4417 8114 - SAVED Test read # 286 ident 668413 23737- 33358 against verified region 31620- 33446 - CANDIDATE hangs 4431 7880 Test read # 287 ident 196075 23739- 33446 against verified region 31620- 33446 Test read # 291 ident 418554 24000- 32709 against verified region 31620- 33446 - CANDIDATE hangs 5098 7619 Test read # 292 ident 490949 24620- 33393 against verified region 31620- 33446 - CANDIDATE hangs 4417 6996 Test read # 293 ident 713368 24703- 33170 against verified region 31620- 33446 - CANDIDATE hangs 4645 6921 Test read # 294 ident 649241 24742- 33263 against verified region 31620- 33446 - CANDIDATE hangs 4556 6881 Test read # 296 ident 631754 25078- 32253 against verified region 31620- 33446 - CANDIDATE hangs 5560 6545 Test read # 298 ident 122733 25293- 32798 against verified region 31620- 33446 - CANDIDATE hangs 5015 6330 Test read # 299 ident 140829 25618- 33394 against verified region 31620- 33446 - CANDIDATE hangs 4420 6005 Test read # 300 ident 204802 25692- 33412 against verified region 31620- 33446 - CANDIDATE hangs 4404 5934 - SAVED Test read # 301 ident 204801 25705- 33406 against verified region 31620- 33446 - CANDIDATE hangs 4404 5919 Test read # 302 ident 204803 25717- 33396 against verified region 31620- 33446 - CANDIDATE hangs 4419 5897 Test read # 303 ident 110629 25847- 33382 against verified region 31620- 33446 - CANDIDATE hangs 4416 5773 Test read # 304 ident 96264 29738- 33387 against verified region 31620- 33446 - CANDIDATE hangs 4412 1872 Test read # 305 ident 101467 29931- 33401 against verified region 31620- 33446 - CANDIDATE hangs 4414 1690 Found appropriate intersecting read. createUnitigs()-- read 360149 place 4 edgeTo tig 113065 reads # 230 156595- 101467 verified 33446- 31620 position 37813- 31620 covered 4404- 6177 BREAK at pos 33412 read 204802 isLow 0 sim 0.9814 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- read 118838 place 0 edgeTo tig 396 reads # 0 360149- 16843 verified 3609- 12272 position 3609- 12441 covered 0- 8718 SELF EXPECTED_3' createUnitigs()-- tig 399 len 9254 first read 113974 with 5 placements - last read 281908 with 2 placements Scan reads from #17 to #27 for low coordinate in verified region 10323-12068 Test read # 17 ident 328932 10323- 16859 against verified region 10323- 12068 Test read # 18 ident 328930 10338- 15963 against verified region 10323- 12068 - CANDIDATE hangs -3851 -4775 - SAVED Test read # 20 ident 441891 10620- 19755 against verified region 10323- 12068 - CANDIDATE hangs -7741 -5217 Test read # 21 ident 553247 10783- 18932 against verified region 10323- 12068 - CANDIDATE hangs -6984 -5423 Test read # 22 ident 553249 10786- 18917 against verified region 10323- 12068 - CANDIDATE hangs -6974 -5430 Test read # 23 ident 553248 10806- 18920 against verified region 10323- 12068 - CANDIDATE hangs -6976 -5447 Test read # 24 ident 561078 10899- 19141 against verified region 10323- 12068 - CANDIDATE hangs -6978 -5336 Test read # 25 ident 561081 10919- 19133 against verified region 10323- 12068 - CANDIDATE hangs -6943 -5336 Test read # 27 ident 158935 11469- 18367 against verified region 10323- 12068 - CANDIDATE hangs -6194 -5883 Found appropriate intersecting read. createUnitigs()-- read 113974 place 0 edgeTo tig 98 reads # 17 328932- 158935 verified 12068- 10323 position 12068- 5483 covered 0- 1790 BREAK at pos 10338 read 328930 isLow 1 sim 1.0000 createUnitigs()-- read 113974 place 1 edgeTo tig 399 reads # 1 113975- 86332 verified 28- 6554 position 6- 6554 covered 0- 6538 SELF Scan reads from #11 to #11 for high coordinate in verified region 9173-10997 Test read # 11 ident 506443 1607- 10997 against verified region 9173- 10997 Failed to find appropriate intersecting read. createUnitigs()-- read 113974 place 2 edgeTo tig 16091 reads # 11 506443- 506443 verified 9173- 10997 position 9173- 15726 covered 0- 1809 NO_OVERLAPS Scan reads from #6 to #108 for low coordinate in verified region 458-6545 Test read # 6 ident 262157 458- 7672 against verified region 458- 6545 Test read # 10 ident 669145 580- 6712 against verified region 458- 6545 - CANDIDATE hangs -175 -736 - SAVED Test read # 11 ident 669148 581- 6717 against verified region 458- 6545 - CANDIDATE hangs -180 -740 Test read # 12 ident 669144 581- 6711 against verified region 458- 6545 - CANDIDATE hangs -173 -740 Test read # 13 ident 669146 582- 6714 against verified region 458- 6545 - CANDIDATE hangs -177 -740 Test read # 14 ident 669149 588- 6712 against verified region 458- 6545 - CANDIDATE hangs -176 -736 Test read # 15 ident 669147 590- 6714 against verified region 458- 6545 - CANDIDATE hangs -179 -750 Test read # 16 ident 669150 590- 6708 against verified region 458- 6545 - CANDIDATE hangs -170 -737 Test read # 18 ident 262160 705- 7676 against verified region 458- 6545 - CANDIDATE hangs -1130 -802 Test read # 19 ident 328690 763- 5062 against verified region 458- 6545 - CANDIDATE hangs 1457 -842 Test read # 20 ident 416001 838- 10048 against verified region 458- 6545 - CANDIDATE hangs -3482 -923 Test read # 21 ident 416003 841- 6897 against verified region 458- 6545 - CANDIDATE hangs -361 -923 Test read # 22 ident 27813 844- 3735 against verified region 458- 6545 - CANDIDATE hangs 2786 -931 Test read # 23 ident 268926 848- 4140 against verified region 458- 6545 - CANDIDATE hangs 2386 -931 Test read # 24 ident 457857 855- 2572 against verified region 458- 6545 - CANDIDATE hangs 3927 -931 Test read # 25 ident 152169 856- 6892 against verified region 458- 6545 - CANDIDATE hangs -355 -929 Test read # 26 ident 627707 856- 5521 against verified region 458- 6545 - CANDIDATE hangs 1016 -932 Test read # 27 ident 290912 859- 12971 against verified region 458- 6545 - CANDIDATE hangs -6379 -931 Test read # 28 ident 416002 860- 10009 against verified region 458- 6545 - CANDIDATE hangs -3444 -931 Test read # 29 ident 416000 860- 9991 against verified region 458- 6545 - CANDIDATE hangs -3427 -932 Test read # 30 ident 496087 860- 5183 against verified region 458- 6545 - CANDIDATE hangs 1343 -932 Test read # 31 ident 1642 861- 8086 against verified region 458- 6545 - CANDIDATE hangs -1521 -932 Test read # 32 ident 178925 861- 7518 against verified region 458- 6545 - CANDIDATE hangs -979 -931 Test read # 33 ident 459357 863- 3156 against verified region 458- 6545 - CANDIDATE hangs 3341 -932 Test read # 34 ident 284770 867- 7175 against verified region 458- 6545 - CANDIDATE hangs -605 -931 Test read # 35 ident 271425 873- 6891 against verified region 458- 6545 - CANDIDATE hangs -355 -935 Test read # 36 ident 401969 874- 8270 against verified region 458- 6545 - CANDIDATE hangs -1726 -929 Test read # 37 ident 374272 875- 7730 against verified region 458- 6545 - CANDIDATE hangs -1131 -932 Test read # 38 ident 384136 878- 7992 against verified region 458- 6545 - CANDIDATE hangs -1436 -948 Test read # 39 ident 271426 878- 2099 against verified region 458- 6545 - CANDIDATE hangs 4392 -945 Test read # 40 ident 642551 882- 5169 against verified region 458- 6545 - CANDIDATE hangs 1344 -935 Test read # 43 ident 53489 938- 4609 against verified region 458- 6545 - CANDIDATE hangs 1898 -949 Test read # 44 ident 384423 954- 8739 against verified region 458- 6545 - CANDIDATE hangs -2224 -933 Test read # 45 ident 620639 972- 3619 against verified region 458- 6545 - CANDIDATE hangs 2890 -1059 Test read # 46 ident 447554 1004- 12453 against verified region 458- 6545 - CANDIDATE hangs -5866 -1075 Test read # 47 ident 163162 1036- 4005 against verified region 458- 6545 - CANDIDATE hangs 2514 -1114 Test read # 48 ident 205426 1100- 6345 against verified region 458- 6545 - CANDIDATE hangs 196 -1173 Test read # 49 ident 644241 1156- 7375 against verified region 458- 6545 - CANDIDATE hangs -822 -1235 Test read # 50 ident 236007 1181- 5431 against verified region 458- 6545 - CANDIDATE hangs 1110 -1262 Test read # 51 ident 271105 1185- 5467 against verified region 458- 6545 - CANDIDATE hangs 1070 -1260 Test read # 52 ident 271104 1201- 5447 against verified region 458- 6545 - CANDIDATE hangs 1088 -1269 Test read # 53 ident 244914 1211- 5503 against verified region 458- 6545 - CANDIDATE hangs 1034 -1287 Test read # 54 ident 215956 1353- 7789 against verified region 458- 6545 - CANDIDATE hangs -1237 -1420 Test read # 55 ident 425397 1439- 7129 against verified region 458- 6545 - CANDIDATE hangs -591 -1494 Test read # 56 ident 27814 1565- 3679 against verified region 458- 6545 - CANDIDATE hangs 2846 -1638 Test read # 57 ident 594730 1578- 4867 against verified region 458- 6545 - CANDIDATE hangs 1659 -1652 Test read # 58 ident 212232 1624- 4877 against verified region 458- 6545 - CANDIDATE hangs 1652 -1698 Test read # 59 ident 570486 1832- 6812 against verified region 458- 6545 - CANDIDATE hangs -272 -1899 Test read # 60 ident 499079 1885- 6926 against verified region 458- 6545 - CANDIDATE hangs -384 -1955 Test read # 61 ident 143001 1993- 5482 against verified region 458- 6545 - CANDIDATE hangs 1051 -2048 Test read # 64 ident 449353 2064- 8501 against verified region 458- 6545 - CANDIDATE hangs -1960 -2121 Test read # 65 ident 642217 2257- 7540 against verified region 458- 6545 - CANDIDATE hangs -994 -2320 Test read # 66 ident 103474 2307- 8069 against verified region 458- 6545 - CANDIDATE hangs -1522 -2364 Test read # 68 ident 697454 2341- 6942 against verified region 458- 6545 - CANDIDATE hangs -421 -2407 Test read # 69 ident 523793 2548- 8150 against verified region 458- 6545 - CANDIDATE hangs -1602 -2605 Test read # 70 ident 5870 2607- 6814 against verified region 458- 6545 - CANDIDATE hangs -276 -2663 Test read # 71 ident 596139 2702- 5492 against verified region 458- 6545 - CANDIDATE hangs 1046 -2763 Test read # 73 ident 516926 2859- 8544 against verified region 458- 6545 - CANDIDATE hangs -1988 -2906 Test read # 74 ident 449132 2956- 8182 against verified region 458- 6545 - CANDIDATE hangs -1625 -3035 Test read # 75 ident 528501 3078- 6232 against verified region 458- 6545 - CANDIDATE hangs 306 -3121 Test read # 76 ident 528502 3192- 6233 against verified region 458- 6545 - CANDIDATE hangs 305 -3231 Test read # 78 ident 708739 3231- 6048 against verified region 458- 6545 - CANDIDATE hangs 494 -3273 Test read # 80 ident 176100 3649- 6249 against verified region 458- 6545 - CANDIDATE hangs 303 -3695 Test read # 81 ident 517254 3664- 7311 against verified region 458- 6545 - CANDIDATE hangs -763 -3686 Test read # 82 ident 361262 3734- 10663 against verified region 458- 6545 - CANDIDATE hangs -4087 -3765 Test read # 84 ident 476613 4100- 9489 against verified region 458- 6545 - CANDIDATE hangs -2928 -4126 Test read # 85 ident 448832 4113- 9554 against verified region 458- 6545 - CANDIDATE hangs -2998 -4149 Test read # 86 ident 211634 4116- 6191 against verified region 458- 6545 - CANDIDATE hangs 356 -4154 Test read # 87 ident 2277 4235- 11080 against verified region 458- 6545 - CANDIDATE hangs -4535 -4273 Test read # 89 ident 67345 4254- 10149 against verified region 458- 6545 - CANDIDATE hangs -3575 -4282 Test read # 90 ident 67347 4255- 10184 against verified region 458- 6545 - CANDIDATE hangs -3611 -4283 Test read # 91 ident 67348 4255- 10181 against verified region 458- 6545 - CANDIDATE hangs -3609 -4284 Test read # 92 ident 67346 4258- 10184 against verified region 458- 6545 - CANDIDATE hangs -3611 -4286 Test read # 94 ident 487741 4262- 9907 against verified region 458- 6545 - CANDIDATE hangs -3344 -4291 Test read # 95 ident 67344 4263- 10176 against verified region 458- 6545 - CANDIDATE hangs -3601 -4291 Test read # 96 ident 67349 4267- 10183 against verified region 458- 6545 - CANDIDATE hangs -3612 -4294 Test read # 97 ident 67343 4271- 10178 against verified region 458- 6545 - CANDIDATE hangs -3606 -4295 Test read # 98 ident 67342 4308- 7890 against verified region 458- 6545 - CANDIDATE hangs -1334 -4339 Test read # 99 ident 627026 4573- 11187 against verified region 458- 6545 - CANDIDATE hangs -4649 -4612 Test read # 100 ident 208499 4874- 8271 against verified region 458- 6545 - CANDIDATE hangs -1712 -4886 Test read # 101 ident 208498 4883- 8680 against verified region 458- 6545 - CANDIDATE hangs -2120 -4897 Test read # 102 ident 370417 5026- 8306 against verified region 458- 6545 - CANDIDATE hangs -1751 -5038 Test read # 103 ident 87973 5188- 11180 against verified region 458- 6545 - CANDIDATE hangs -4594 -5198 Test read # 104 ident 342611 5279- 7412 against verified region 458- 6545 - CANDIDATE hangs -878 -5292 Test read # 106 ident 561082 5349- 13560 against verified region 458- 6545 - CANDIDATE hangs -6943 -5334 Test read # 108 ident 553250 5427- 7310 against verified region 458- 6545 - CANDIDATE hangs -760 -5432 Found appropriate intersecting read. createUnitigs()-- read 113974 place 3 edgeTo tig 113150 reads # 6 262157- 553250 verified 6545- 458 position 6545- -62 covered 0- 5947 BREAK at pos 580 read 669145 isLow 1 sim 0.9834 Scan reads from #9 to #9 for high coordinate in verified region 11691-13199 Test read # 9 ident 41419 4233- 13199 against verified region 11691- 13199 Failed to find appropriate intersecting read. createUnitigs()-- read 113974 place 4 edgeTo tig 113449 reads # 9 41419- 41419 verified 11691- 13199 position 11691- 18286 covered 0- 1451 NO_OVERLAPS NOT_SIMILAR createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 281908 place 0 edgeTo tig 399 reads # 0 113974- 86332 verified 2788- 9253 position 2788- 9253 covered 0- 6425 SELF Scan reads from #10 to #75 for high coordinate in verified region 580-3774 Test read # 10 ident 669145 580- 6712 against verified region 580- 3774 Test read # 11 ident 669148 581- 6717 against verified region 580- 3774 Test read # 12 ident 669144 581- 6711 against verified region 580- 3774 Test read # 13 ident 669146 582- 6714 against verified region 580- 3774 Test read # 14 ident 669149 588- 6712 against verified region 580- 3774 Test read # 15 ident 669147 590- 6714 against verified region 580- 3774 Test read # 16 ident 669150 590- 6708 against verified region 580- 3774 Test read # 18 ident 262160 705- 7676 against verified region 580- 3774 Test read # 19 ident 328690 763- 5062 against verified region 580- 3774 Test read # 20 ident 416001 838- 10048 against verified region 580- 3774 Test read # 21 ident 416003 841- 6897 against verified region 580- 3774 Test read # 22 ident 27813 844- 3735 against verified region 580- 3774 - CANDIDATE hangs -3 -3619 Test read # 23 ident 268926 848- 4140 against verified region 580- 3774 Test read # 24 ident 457857 855- 2572 against verified region 580- 3774 - CANDIDATE hangs 1129 -3619 Test read # 25 ident 152169 856- 6892 against verified region 580- 3774 Test read # 26 ident 627707 856- 5521 against verified region 580- 3774 Test read # 27 ident 290912 859- 12971 against verified region 580- 3774 Test read # 28 ident 416002 860- 10009 against verified region 580- 3774 Test read # 29 ident 416000 860- 9991 against verified region 580- 3774 Test read # 30 ident 496087 860- 5183 against verified region 580- 3774 Test read # 31 ident 1642 861- 8086 against verified region 580- 3774 Test read # 32 ident 178925 861- 7518 against verified region 580- 3774 Test read # 33 ident 459357 863- 3156 against verified region 580- 3774 - CANDIDATE hangs 549 -3620 Test read # 34 ident 284770 867- 7175 against verified region 580- 3774 Test read # 35 ident 271425 873- 6891 against verified region 580- 3774 Test read # 36 ident 401969 874- 8270 against verified region 580- 3774 Test read # 37 ident 374272 875- 7730 against verified region 580- 3774 Test read # 38 ident 384136 878- 7992 against verified region 580- 3774 Test read # 39 ident 271426 878- 2099 against verified region 580- 3774 - CANDIDATE hangs 1591 -3633 Test read # 40 ident 642551 882- 5169 against verified region 580- 3774 Test read # 41 ident 426994 909- 7982 against verified region 580- 3774 Test read # 42 ident 722919 911- 4988 against verified region 580- 3774 Test read # 43 ident 53489 938- 4609 against verified region 580- 3774 Test read # 45 ident 620639 972- 3619 against verified region 580- 3774 - CANDIDATE hangs 102 -3747 Test read # 46 ident 447554 1004- 12453 against verified region 580- 3774 Test read # 48 ident 205426 1100- 6345 against verified region 580- 3774 Test read # 49 ident 644241 1156- 7375 against verified region 580- 3774 Test read # 50 ident 236007 1181- 5431 against verified region 580- 3774 Test read # 51 ident 271105 1185- 5467 against verified region 580- 3774 Test read # 52 ident 271104 1201- 5447 against verified region 580- 3774 Test read # 54 ident 215956 1353- 7789 against verified region 580- 3774 Test read # 55 ident 425397 1439- 7129 against verified region 580- 3774 Test read # 57 ident 594730 1578- 4867 against verified region 580- 3774 Test read # 58 ident 212232 1624- 4877 against verified region 580- 3774 Test read # 59 ident 570486 1832- 6812 against verified region 580- 3774 Test read # 60 ident 499079 1885- 6926 against verified region 580- 3774 Test read # 61 ident 143001 1993- 5482 against verified region 580- 3774 Test read # 62 ident 265776 2015- 7511 against verified region 580- 3774 Test read # 64 ident 449353 2064- 8501 against verified region 580- 3774 Test read # 65 ident 642217 2257- 7540 against verified region 580- 3774 Test read # 66 ident 103474 2307- 8069 against verified region 580- 3774 Test read # 68 ident 697454 2341- 6942 against verified region 580- 3774 Test read # 69 ident 523793 2548- 8150 against verified region 580- 3774 Test read # 70 ident 5870 2607- 6814 against verified region 580- 3774 Test read # 72 ident 163163 2730- 4379 against verified region 580- 3774 Test read # 73 ident 516926 2859- 8544 against verified region 580- 3774 Test read # 74 ident 449132 2956- 8182 against verified region 580- 3774 Test read # 75 ident 528501 3078- 6232 against verified region 580- 3774 Failed to find appropriate intersecting read. createUnitigs()-- read 281908 place 1 edgeTo tig 113150 reads # 10 669145- 528501 verified 3774- 580 position 3774- -2763 covered 0- 3012 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 425 len 6353 first read 430310 with 5 placements - last read 688789 with 5 placements createUnitigs()-- read 430310 place 0 edgeTo tig 425 reads # 1 430308- 430306 verified 30- 6110 position 1- 6110 covered 28- 6100 SELF EXPECTED_5' Scan reads from #1 to #6 for high coordinate in verified region 6291-7629 Test read # 1 ident 554624 6291- 9862 against verified region 6291- 7629 Test read # 2 ident 205965 6306- 9761 against verified region 6291- 7629 Test read # 3 ident 51112 6791- 15769 against verified region 6291- 7629 Test read # 4 ident 51110 6806- 15767 against verified region 6291- 7629 Test read # 5 ident 51109 6829- 15767 against verified region 6291- 7629 Test read # 6 ident 51111 6852- 15768 against verified region 6291- 7629 Failed to find appropriate intersecting read. createUnitigs()-- read 430310 place 1 edgeTo tig 7336 reads # 1 554624- 51111 verified 6291- 7629 position 1505- 7629 covered 4784- 6100 EXPECTED_5' NO_OVERLAPS Scan reads from #12 to #23 for low coordinate in verified region 14412-17086 Test read # 12 ident 78597 7632- 15129 against verified region 14412- 17086 Test read # 13 ident 78599 7634- 15120 against verified region 14412- 17086 Test read # 14 ident 78595 7637- 15118 against verified region 14412- 17086 Test read # 15 ident 78596 7639- 15121 against verified region 14412- 17086 Test read # 16 ident 78594 7655- 15130 against verified region 14412- 17086 Test read # 17 ident 78598 7702- 15127 against verified region 14412- 17086 Test read # 18 ident 698709 9319- 15406 against verified region 14412- 17086 Test read # 19 ident 621432 11113- 17080 against verified region 14412- 17086 Test read # 20 ident 621433 11114- 17086 against verified region 14412- 17086 Test read # 21 ident 621431 11117- 17082 against verified region 14412- 17086 Test read # 22 ident 621430 11117- 17081 against verified region 14412- 17086 Test read # 23 ident 621429 11992- 17076 against verified region 14412- 17086 Failed to find appropriate intersecting read. createUnitigs()-- read 430310 place 2 edgeTo tig 113168 reads # 12 78597- 621429 verified 17086- 14412 position 20536- 14412 covered 3440- 6100 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #22 for low coordinate in verified region 1110-5784 Test read # 0 ident 212987 0- 3659 against verified region 1110- 5784 Test read # 1 ident 621434 81- 3768 against verified region 1110- 5784 Test read # 4 ident 117745 113- 4348 against verified region 1110- 5784 Test read # 5 ident 401944 113- 2100 against verified region 1110- 5784 Test read # 6 ident 516366 115- 2300 against verified region 1110- 5784 Test read # 7 ident 628903 117- 4051 against verified region 1110- 5784 Test read # 8 ident 233590 117- 2684 against verified region 1110- 5784 Test read # 10 ident 195650 119- 4594 against verified region 1110- 5784 Test read # 11 ident 220882 120- 3574 against verified region 1110- 5784 Test read # 12 ident 516365 120- 2267 against verified region 1110- 5784 Test read # 15 ident 605482 137- 1983 against verified region 1110- 5784 Test read # 16 ident 557913 184- 4146 against verified region 1110- 5784 Test read # 18 ident 306260 574- 4184 against verified region 1110- 5784 Test read # 19 ident 527573 575- 5784 against verified region 1110- 5784 Test read # 20 ident 235149 1105- 4161 against verified region 1110- 5784 Test read # 21 ident 585585 1496- 3887 against verified region 1110- 5784 - CANDIDATE hangs 3324 -364 Test read # 22 ident 168512 1612- 4157 against verified region 1110- 5784 - CANDIDATE hangs 3051 -480 Failed to find appropriate intersecting read. createUnitigs()-- read 430310 place 3 edgeTo tig 113169 reads # 0 212987- 168512 verified 5784- 1110 position 7217- 1110 covered 1505- 6100 EXPECTED_5' NO_OVERLAPS Scan reads from #27 to #27 for low coordinate in verified region 7597-8916 Test read # 27 ident 346252 7597- 11894 against verified region 7597- 8916 Failed to find appropriate intersecting read. createUnitigs()-- read 430310 place 4 edgeTo tig 113169 reads # 27 346252- 346252 verified 8916- 7597 position 8916- 2812 covered 0- 1315 NO_OVERLAPS createUnitigs()-- read 688789 place 0 edgeTo tig 425 reads # 0 430310- 430306 verified 1504- 6137 position 1504- 6351 covered 0- 4635 SELF EXPECTED_3' Scan reads from #1 to #6 for low coordinate in verified region 6291-7872 Test read # 1 ident 554624 6291- 9862 against verified region 6291- 7872 Test read # 2 ident 205965 6306- 9761 against verified region 6291- 7872 - CANDIDATE hangs 3310 1897 - SAVED Test read # 3 ident 51112 6791- 15769 against verified region 6291- 7872 - CANDIDATE hangs 3795 7897 Test read # 4 ident 51110 6806- 15767 against verified region 6291- 7872 - CANDIDATE hangs 3803 7882 Test read # 5 ident 51109 6829- 15767 against verified region 6291- 7872 - CANDIDATE hangs 3833 7890 Test read # 6 ident 51111 6852- 15768 against verified region 6291- 7872 - CANDIDATE hangs 3851 7876 Found appropriate intersecting read. createUnitigs()-- read 688789 place 1 edgeTo tig 7336 reads # 1 554624- 51111 verified 6291- 7872 position 2999- 7872 covered 3287- 4848 BREAK at pos 6306 read 205965 isLow 1 sim 0.9905 Scan reads from #12 to #23 for high coordinate in verified region 14171-17086 Test read # 12 ident 78597 7632- 15129 against verified region 14171- 17086 - CANDIDATE hangs 3923 6538 - SAVED Test read # 13 ident 78599 7634- 15120 against verified region 14171- 17086 - CANDIDATE hangs 3932 6537 Test read # 14 ident 78595 7637- 15118 against verified region 14171- 17086 - CANDIDATE hangs 3933 6532 Test read # 15 ident 78596 7639- 15121 against verified region 14171- 17086 - CANDIDATE hangs 3930 6532 Test read # 16 ident 78594 7655- 15130 against verified region 14171- 17086 - CANDIDATE hangs 3920 6518 - SAVED Test read # 17 ident 78598 7702- 15127 against verified region 14171- 17086 - CANDIDATE hangs 3924 6469 Test read # 18 ident 698709 9319- 15406 against verified region 14171- 17086 - CANDIDATE hangs 3642 4850 - SAVED Test read # 19 ident 621432 11113- 17080 against verified region 14171- 17086 - CANDIDATE hangs 1944 3058 - SAVED Test read # 20 ident 621433 11114- 17086 against verified region 14171- 17086 Test read # 21 ident 621431 11117- 17082 against verified region 14171- 17086 - CANDIDATE hangs 1944 3054 - SAVED Test read # 22 ident 621430 11117- 17081 against verified region 14171- 17086 - CANDIDATE hangs 1939 3058 Test read # 23 ident 621429 11992- 17076 against verified region 14171- 17086 - CANDIDATE hangs 1943 2177 Found appropriate intersecting read. createUnitigs()-- read 688789 place 2 edgeTo tig 113168 reads # 12 78597- 621429 verified 17086- 14171 position 19039- 14171 covered 1939- 4848 BREAK at pos 17082 read 621431 isLow 0 sim 0.9983 Scan reads from #38 to #38 for low coordinate in verified region 11671-12222 Test read # 38 ident 522468 11671- 12975 against verified region 11671- 12222 Failed to find appropriate intersecting read. createUnitigs()-- read 688789 place 3 edgeTo tig 113169 reads # 38 522468- 522468 verified 11671- 12222 position 7361- 12222 covered 4310- 4848 NO_OVERLAPS Scan reads from #0 to #22 for high coordinate in verified region 868-5721 Test read # 0 ident 212987 0- 3659 against verified region 868- 5721 - CANDIDATE hangs 2057 863 - SAVED Test read # 1 ident 621434 81- 3768 against verified region 868- 5721 - CANDIDATE hangs 1943 781 - SAVED Test read # 2 ident 586398 109- 1447 against verified region 868- 5721 - CANDIDATE hangs 4298 773 Test read # 4 ident 117745 113- 4348 against verified region 868- 5721 - CANDIDATE hangs 1380 746 - SAVED Test read # 5 ident 401944 113- 2100 against verified region 868- 5721 - CANDIDATE hangs 3638 750 Test read # 6 ident 516366 115- 2300 against verified region 868- 5721 - CANDIDATE hangs 3421 753 Test read # 7 ident 628903 117- 4051 against verified region 868- 5721 - CANDIDATE hangs 1655 739 Test read # 8 ident 233590 117- 2684 against verified region 868- 5721 - CANDIDATE hangs 3032 746 Test read # 10 ident 195650 119- 4594 against verified region 868- 5721 - CANDIDATE hangs 1146 743 - SAVED Test read # 11 ident 220882 120- 3574 against verified region 868- 5721 - CANDIDATE hangs 2117 746 Test read # 12 ident 516365 120- 2267 against verified region 868- 5721 - CANDIDATE hangs 3461 744 Test read # 14 ident 347069 136- 1609 against verified region 868- 5721 - CANDIDATE hangs 4130 728 Test read # 15 ident 605482 137- 1983 against verified region 868- 5721 - CANDIDATE hangs 3752 724 Test read # 16 ident 557913 184- 4146 against verified region 868- 5721 - CANDIDATE hangs 1554 686 Test read # 17 ident 591543 191- 1603 against verified region 868- 5721 - CANDIDATE hangs 4131 658 Test read # 18 ident 306260 574- 4184 against verified region 868- 5721 - CANDIDATE hangs 1502 301 Test read # 19 ident 527573 575- 5784 against verified region 868- 5721 Test read # 20 ident 235149 1105- 4161 against verified region 868- 5721 - CANDIDATE hangs 1533 -216 Test read # 21 ident 585585 1496- 3887 against verified region 868- 5721 - CANDIDATE hangs 1825 -605 Test read # 22 ident 168512 1612- 4157 against verified region 868- 5721 - CANDIDATE hangs 1550 -721 Found appropriate intersecting read. createUnitigs()-- read 688789 place 4 edgeTo tig 113169 reads # 0 212987- 168512 verified 5721- 868 position 5721- 868 covered 1- 4848 BREAK at pos 4594 read 195650 isLow 0 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- tig 427 len 8151 first read 450281 with 1 placements - last read 364089 with 1 placements createUnitigs()-- read 450281 place 0 edgeTo tig 427 reads # 1 406482- 522779 verified 8- 4941 position 8- 4941 covered 0- 4916 SELF createUnitigs()-- read 364089 place 0 edgeTo tig 427 reads # 0 450281- 522779 verified 2704- 6760 position 2704- 8152 covered 0- 4028 SELF EXPECTED_3' createUnitigs()-- tig 428 len 38010 first read 241745 with 1 placements - last read 35621 with 1 placements createUnitigs()-- read 241745 place 0 edgeTo tig 428 reads # 1 241743- 634679 verified 6773- 2 position 6773- 2 covered 0- 6763 SELF createUnitigs()-- read 35621 place 0 edgeTo tig 428 reads # 43 663341- 495828 verified 38003- 35697 position 38003- 35697 covered 0- 2314 SELF createUnitigs()-- tig 432 len 13481 first read 512504 with 1 placements - last read 268728 with 2 placements createUnitigs()-- read 512504 place 0 edgeTo tig 432 reads # 1 527225- 381539 verified 265- 3267 position 2- 3267 covered 271- 3208 SELF EXPECTED_5' Scan reads from #20 to #32 for low coordinate in verified region 8108-15553 Test read # 20 ident 224221 8108- 14936 against verified region 8108- 15553 Test read # 21 ident 235138 9346- 13704 against verified region 8108- 15553 - CANDIDATE hangs 2717 -1877 Test read # 22 ident 192518 9495- 15839 against verified region 8108- 15553 - CANDIDATE hangs 2856 272 - SAVED Test read # 23 ident 368078 9734- 20204 against verified region 8108- 15553 - CANDIDATE hangs 3063 4648 Test read # 25 ident 192519 10525- 15993 against verified region 8108- 15553 - CANDIDATE hangs 3867 452 Test read # 26 ident 368079 10687- 21061 against verified region 8108- 15553 - CANDIDATE hangs 3970 5505 Test read # 27 ident 642169 10702- 20730 against verified region 8108- 15553 - CANDIDATE hangs 4072 5185 Test read # 28 ident 642170 10714- 21047 against verified region 8108- 15553 - CANDIDATE hangs 4087 5509 Test read # 29 ident 291426 11072- 12388 against verified region 8108- 15553 - CANDIDATE hangs 4453 -3166 Test read # 30 ident 221119 13375- 15140 against verified region 8108- 15553 - CANDIDATE hangs 6746 -403 Test read # 31 ident 388270 13669- 18972 against verified region 8108- 15553 - CANDIDATE hangs 7043 3420 Test read # 32 ident 274605 13765- 17535 against verified region 8108- 15553 - CANDIDATE hangs 7145 1999 Found appropriate intersecting read. createUnitigs()-- read 268728 place 0 edgeTo tig 152 reads # 20 224221- 274605 verified 8108- 15553 position 6634- 15553 covered 1565- 8911 BREAK at pos 9495 read 192518 isLow 1 sim 0.8337 createUnitigs()-- read 268728 place 1 edgeTo tig 432 reads # 3 211037- 78524 verified 4512- 13446 position 4512- 13483 covered 0- 8887 SELF EXPECTED_3' createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 436 len 10958 first read 98374 with 6 placements - last read 520746 with 1 placements createUnitigs()-- read 98374 place 0 edgeTo tig 436 reads # 1 98377- 520745 verified 5656- 6 position 5656- 4 covered 0- 5645 SELF EXPECTED_3' Scan reads from #68 to #68 for high coordinate in verified region 7643-8555 Test read # 68 ident 682071 4854- 8555 against verified region 7643- 8555 Failed to find appropriate intersecting read. createUnitigs()-- read 98374 place 1 edgeTo tig 113073 reads # 68 682071- 682071 verified 8555- 7643 position 13350- 7643 covered 4795- 5653 NO_OVERLAPS Scan reads from #88 to #88 for high coordinate in verified region 14778-15714 Test read # 88 ident 519267 6595- 15714 against verified region 14778- 15714 Failed to find appropriate intersecting read. createUnitigs()-- read 98374 place 2 edgeTo tig 113073 reads # 88 519267- 519267 verified 15714- 14778 position 20517- 14778 covered 4803- 5653 NO_OVERLAPS Scan reads from #212 to #212 for high coordinate in verified region 28587-29455 Test read # 212 ident 519268 25878- 29455 against verified region 28587- 29455 Failed to find appropriate intersecting read. createUnitigs()-- read 98374 place 3 edgeTo tig 113073 reads # 212 519268- 519268 verified 29455- 28587 position 34255- 28587 covered 4800- 5653 NO_OVERLAPS Scan reads from #180 to #205 for high coordinate in verified region 30395-31906 Test read # 180 ident 109123 20012- 31290 against verified region 30395- 31906 - CANDIDATE hangs 4844 10389 - SAVED Test read # 185 ident 109125 20764- 31906 against verified region 30395- 31906 Test read # 205 ident 82039 25125- 30560 against verified region 30395- 31906 - CANDIDATE hangs 4836 4575 Found appropriate intersecting read. createUnitigs()-- read 98374 place 4 edgeTo tig 113073 reads # 180 109123- 82039 verified 31906- 30395 position 36118- 30395 covered 4836- 5653 BREAK at pos 31290 read 109123 isLow 0 sim 1.0000 Scan reads from #13 to #21 for low coordinate in verified region 5827-7348 Test read # 13 ident 264511 5827- 7348 against verified region 5827- 7348 Test read # 14 ident 53346 5839- 7265 against verified region 5827- 7348 - CANDIDATE hangs 2336 -1892 Test read # 21 ident 636181 5984- 7039 against verified region 5827- 7348 - CANDIDATE hangs 2480 -2124 Failed to find appropriate intersecting read. createUnitigs()-- read 98374 place 5 edgeTo tig 582805 reads # 13 264511- 636181 verified 5827- 7348 position 3503- 9157 covered 2323- 3848 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 520746 place 0 edgeTo tig 436 reads # 5 88852- 520744 verified 10953- 6124 position 10958- 6124 covered 0- 4788 SELF createUnitigs()-- tig 442 len 22913 first read 204661 with 1 placements - last read 565610 with 5 placements createUnitigs()-- read 204661 place 0 edgeTo tig 442 reads # 1 204663- 16603 verified 3846- 4 position 3846- 0 covered 0- 3832 SELF createUnitigs()-- read 565610 place 0 edgeTo tig 442 reads # 16 523373- 383303 verified 17401- 22732 position 17401- 22910 covered 0- 5213 SELF EXPECTED_3' Scan reads from #22 to #25 for low coordinate in verified region 13290-14640 Test read # 22 ident 200736 13290- 14611 against verified region 13290- 14640 Test read # 23 ident 145404 13293- 14637 against verified region 13290- 14640 - CANDIDATE hangs 1400 -2736 Test read # 25 ident 660695 13297- 14640 against verified region 13290- 14640 - CANDIDATE hangs 1405 -2733 Failed to find appropriate intersecting read. createUnitigs()-- read 565610 place 1 edgeTo tig 3943 reads # 22 200736- 660695 verified 13290- 14640 position 11893- 17372 covered 1396- 2735 EXPECTED_3' NO_OVERLAPS Scan reads from #3 to #4 for low coordinate in verified region 501-1855 Test read # 3 ident 51924 501- 1853 against verified region 501- 1855 Test read # 4 ident 545886 504- 1855 against verified region 501- 1855 - CANDIDATE hangs 1398 -2729 Failed to find appropriate intersecting read. createUnitigs()-- read 565610 place 2 edgeTo tig 14614 reads # 3 51924- 545886 verified 501- 1855 position -894- 4583 covered 1396- 2739 EXPECTED_3' NO_OVERLAPS Scan reads from #5 to #5 for high coordinate in verified region 2796-4098 Test read # 5 ident 536001 2796- 4098 against verified region 2796- 4098 Failed to find appropriate intersecting read. createUnitigs()-- read 565610 place 3 edgeTo tig 582974 reads # 5 536001- 536001 verified 4098- 2796 position 5504- 50 covered 1406- 2722 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #4 for low coordinate in verified region 0-1349 Test read # 0 ident 593095 0- 1349 against verified region 0- 1349 Test read # 1 ident 172994 0- 1339 against verified region 0- 1349 Test read # 2 ident 606849 2- 1318 against verified region 0- 1349 - CANDIDATE hangs 1397 -2761 Test read # 3 ident 256397 3- 1314 against verified region 0- 1349 - CANDIDATE hangs 1396 -2763 Test read # 4 ident 58555 5- 1342 against verified region 0- 1349 - CANDIDATE hangs 1398 -2735 Failed to find appropriate intersecting read. createUnitigs()-- read 565610 place 4 edgeTo tig 584249 reads # 0 593095- 58555 verified 0- 1349 position -1394- 4078 covered 1394- 2736 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 443 len 12367 first read 582995 with 9 placements - last read 567905 with 1 placements createUnitigs()-- read 582995 place 0 edgeTo tig 443 reads # 1 380144- 665762 verified 8697- 3336 position 8697- 14 covered 0- 5356 SELF EXPECTED_3' Scan reads from #15 to #15 for low coordinate in verified region 5164-6068 Test read # 15 ident 285272 5164- 11628 against verified region 5164- 6068 Failed to find appropriate intersecting read. createUnitigs()-- read 582995 place 1 edgeTo tig 5080 reads # 15 285272- 285272 verified 5164- 6068 position -2703- 6068 covered 7867- 8680 NO_OVERLAPS Scan reads from #10 to #10 for high coordinate in verified region 5740-7022 Test read # 10 ident 411877 44- 7022 against verified region 5740- 7022 Failed to find appropriate intersecting read. createUnitigs()-- read 582995 place 2 edgeTo tig 10032 reads # 10 411877- 411877 verified 7022- 5740 position 14466- 5740 covered 7444- 8680 NO_OVERLAPS Scan reads from #10 to #10 for high coordinate in verified region 10651-11508 Test read # 10 ident 116074 2153- 11508 against verified region 10651- 11508 Failed to find appropriate intersecting read. createUnitigs()-- read 582995 place 3 edgeTo tig 113163 reads # 10 116074- 116074 verified 11508- 10651 position 19364- 10651 covered 7856- 8680 NO_OVERLAPS NOT_SIMILAR Scan reads from #65 to #186 for high coordinate in verified region 6522-9002 Test read # 65 ident 530968 5275- 8796 against verified region 6522- 9002 - CANDIDATE hangs 6572 1307 - SAVED Test read # 103 ident 135768 6359- 8557 against verified region 6522- 9002 - CANDIDATE hangs 6527 -4 Test read # 110 ident 341321 6420- 8651 against verified region 6522- 9002 - CANDIDATE hangs 6528 1 Test read # 162 ident 662489 6687- 9002 against verified region 6522- 9002 Test read # 186 ident 195677 6998- 8890 against verified region 6522- 9002 - CANDIDATE hangs 6435 -431 Found appropriate intersecting read. createUnitigs()-- read 582995 place 4 edgeTo tig 113196 reads # 65 530968- 195677 verified 9002- 6522 position 15278- 6522 covered 6435- 8680 BREAK at pos 8796 read 530968 isLow 0 sim 1.0000 Scan reads from #3 to #3 for high coordinate in verified region 8077-10550 Test read # 3 ident 605823 1441- 10550 against verified region 8077- 10550 Failed to find appropriate intersecting read. createUnitigs()-- read 582995 place 5 edgeTo tig 113196 reads # 3 605823- 605823 verified 10550- 8077 position 16968- 8077 covered 6418- 8680 NO_OVERLAPS Scan reads from #28 to #55 for high coordinate in verified region 10099-13088 Test read # 28 ident 350509 4011- 12126 against verified region 10099- 13088 - CANDIDATE hangs 6384 5661 - SAVED Test read # 29 ident 144118 4015- 11661 against verified region 10099- 13088 - CANDIDATE hangs 6831 5636 Test read # 43 ident 350507 4756- 12817 against verified region 10099- 13088 - CANDIDATE hangs 6402 5654 - SAVED Test read # 55 ident 350508 5011- 13088 against verified region 10099- 13088 Found appropriate intersecting read. createUnitigs()-- read 582995 place 6 edgeTo tig 113196 reads # 28 350509- 350508 verified 13088- 10099 position 18925- 10099 covered 6384- 8680 BREAK at pos 12817 read 350507 isLow 0 sim 0.7347 Scan reads from #2 to #2 for low coordinate in verified region 1-931 Test read # 2 ident 327652 1- 10051 against verified region 1- 931 Failed to find appropriate intersecting read. createUnitigs()-- read 582995 place 7 edgeTo tig 113925 reads # 2 327652- 327652 verified 1- 931 position -7841- 931 covered 7842- 8680 NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #4 for low coordinate in verified region 0-2042 Test read # 0 ident 89747 0- 8029 against verified region 0- 2042 Test read # 1 ident 89750 3- 8030 against verified region 0- 2042 - CANDIDATE hangs 6640 5994 - SAVED Test read # 2 ident 89748 3- 8028 against verified region 0- 2042 - CANDIDATE hangs 6641 5984 Test read # 3 ident 89751 3- 7993 against verified region 0- 2042 - CANDIDATE hangs 6646 5956 Test read # 4 ident 89749 9- 8005 against verified region 0- 2042 - CANDIDATE hangs 6647 5948 Found appropriate intersecting read. createUnitigs()-- read 582995 place 8 edgeTo tig 582262 reads # 0 89747- 89749 verified 0- 2042 position -6639- 2042 covered 6640- 8680 NOT_SIMILAR createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 567905 place 0 edgeTo tig 443 reads # 0 582995- 665762 verified 6258- 12364 position 6258- 12366 covered 0- 6075 SELF createUnitigs()-- tig 454 len 48445 first read 40353 with 1 placements - last read 643383 with 1 placements createUnitigs()-- read 40353 place 0 edgeTo tig 454 reads # 1 40356- 135835 verified 6107- 14 position 6107- 14 covered 0- 6060 SELF EXPECTED_3' createUnitigs()-- read 643383 place 0 edgeTo tig 454 reads # 108 564889- 568396 verified 48444- 42859 position 48444- 42859 covered 0- 5570 SELF createUnitigs()-- tig 459 len 48394 first read 684689 with 1 placements - last read 30246 with 3 placements createUnitigs()-- read 684689 place 0 edgeTo tig 459 reads # 1 684690- 422410 verified 7538- 3 position 7538- 2 covered 0- 7530 SELF createUnitigs()-- read 30246 place 0 edgeTo tig 459 reads # 34 479179- 346561 verified 48336- 39098 position 48376- 39098 covered 48- 9196 SELF EXPECTED_5' Scan reads from #32 to #33 for high coordinate in verified region 14317-18302 Test read # 32 ident 14525 14317- 15916 against verified region 14317- 18302 - CANDIDATE hangs 1459 -6132 Test read # 33 ident 391426 16649- 18302 against verified region 14317- 18302 Failed to find appropriate intersecting read. createUnitigs()-- read 30246 place 1 edgeTo tig 574 reads # 32 14525- 391426 verified 14317- 18302 position 12865- 22071 covered 1459- 5403 EXPECTED_5' NO_OVERLAPS Scan reads from #25 to #34 for high coordinate in verified region 13073-17104 Test read # 25 ident 218078 13073- 15939 against verified region 13073- 17104 - CANDIDATE hangs 1439 -4937 Test read # 26 ident 208572 13074- 16644 against verified region 13073- 17104 - CANDIDATE hangs 1439 -4245 Test read # 27 ident 1548 13090- 14853 against verified region 13073- 17104 - CANDIDATE hangs 1453 -6010 Test read # 28 ident 418365 13099- 16383 against verified region 13073- 17104 - CANDIDATE hangs 1465 -4514 Test read # 29 ident 218077 13099- 14803 against verified region 13073- 17104 - CANDIDATE hangs 1462 -6056 Test read # 30 ident 343535 13099- 14721 against verified region 13073- 17104 - CANDIDATE hangs 1459 -6134 Test read # 31 ident 135931 13113- 17023 against verified region 13073- 17104 - CANDIDATE hangs 1475 -3874 Test read # 32 ident 41182 13114- 17104 against verified region 13073- 17104 Test read # 33 ident 699435 13220- 16304 against verified region 13073- 17104 - CANDIDATE hangs 1588 -4595 Test read # 34 ident 208573 15064- 16408 against verified region 13073- 17104 - CANDIDATE hangs 3401 -4486 Failed to find appropriate intersecting read. createUnitigs()-- read 30246 place 2 edgeTo tig 113508 reads # 25 218078- 208573 verified 13073- 17104 position 11638- 20882 covered 1439- 5400 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 466 len 20903 first read 388569 with 1 placements - last read 7316 with 1 placements createUnitigs()-- read 388569 place 0 edgeTo tig 466 reads # 1 497207- 458378 verified 6529- 488 position 6529- 18 covered 0- 6003 SELF EXPECTED_3' createUnitigs()-- read 7316 place 0 edgeTo tig 466 reads # 42 431177- 367137 verified 17110- 20885 position 17110- 20888 covered 0- 3745 SELF createUnitigs()-- tig 468 len 11306 first read 414778 with 1 placements - last read 189100 with 1 placements createUnitigs()-- read 414778 place 0 edgeTo tig 468 reads # 1 16995- 222431 verified 6016- 82 position 6016- 14 covered 0- 5989 SELF createUnitigs()-- read 189100 place 0 edgeTo tig 468 reads # 0 414778- 189098 verified 5194- 11291 position 5194- 11291 covered 0- 6076 SELF createUnitigs()-- tig 469 len 9168 first read 17406 with 4 placements - last read 297191 with 4 placements Scan reads from #12 to #17 for high coordinate in verified region 4508-5116 Test read # 12 ident 208991 4508- 9487 against verified region 4508- 5116 Test read # 14 ident 182693 4534- 9552 against verified region 4508- 5116 Test read # 17 ident 16758 4547- 9750 against verified region 4508- 5116 Failed to find appropriate intersecting read. createUnitigs()-- read 17406 place 0 edgeTo tig 54 reads # 12 208991- 16758 verified 5116- 4508 position 5116- -2041 covered 0- 580 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 17406 place 1 edgeTo tig 469 reads # 1 17407- 232399 verified 7119- 7 position 7126- 7 covered 0- 7135 SELF Scan reads from #6 to #84 for low coordinate in verified region 5218-7513 Test read # 6 ident 49526 5218- 12002 against verified region 5218- 7513 Test read # 8 ident 677117 5220- 9313 against verified region 5218- 7513 - CANDIDATE hangs 5016 1833 - SAVED Test read # 9 ident 262762 5221- 12147 against verified region 5218- 7513 - CANDIDATE hangs 5031 4644 Test read # 10 ident 108465 5223- 14019 against verified region 5218- 7513 - CANDIDATE hangs 5026 6484 Test read # 11 ident 107919 5224- 10268 against verified region 5218- 7513 - CANDIDATE hangs 5022 2778 Test read # 12 ident 337379 5225- 13796 against verified region 5218- 7513 - CANDIDATE hangs 5022 6250 Test read # 13 ident 384150 5225- 13356 against verified region 5218- 7513 - CANDIDATE hangs 5024 5823 Test read # 14 ident 718613 5226- 8911 against verified region 5218- 7513 - CANDIDATE hangs 5021 1432 Test read # 15 ident 144062 5227- 12986 against verified region 5218- 7513 - CANDIDATE hangs 5024 5448 Test read # 16 ident 675489 5227- 12039 against verified region 5218- 7513 - CANDIDATE hangs 5025 4523 Test read # 17 ident 623912 5229- 12883 against verified region 5218- 7513 - CANDIDATE hangs 5026 5354 Test read # 18 ident 246498 5229- 9289 against verified region 5218- 7513 - CANDIDATE hangs 5016 1806 Test read # 20 ident 108466 5231- 14010 against verified region 5218- 7513 - CANDIDATE hangs 5025 6479 Test read # 21 ident 228152 5231- 12727 against verified region 5218- 7513 - CANDIDATE hangs 5025 5207 Test read # 22 ident 384500 5232- 14009 against verified region 5218- 7513 - CANDIDATE hangs 5030 6473 Test read # 23 ident 529911 5232- 13996 against verified region 5218- 7513 - CANDIDATE hangs 5044 6508 Test read # 24 ident 529908 5232- 13995 against verified region 5218- 7513 - CANDIDATE hangs 5035 6476 Test read # 25 ident 497117 5233- 14018 against verified region 5218- 7513 - CANDIDATE hangs 5025 6471 Test read # 26 ident 282010 5234- 12452 against verified region 5218- 7513 - CANDIDATE hangs 5023 4931 Test read # 27 ident 107918 5234- 10275 against verified region 5218- 7513 - CANDIDATE hangs 5026 2787 Test read # 28 ident 711683 5235- 8708 against verified region 5218- 7513 - CANDIDATE hangs 5027 1248 Test read # 29 ident 384151 5236- 11166 against verified region 5218- 7513 - CANDIDATE hangs 5029 3657 Test read # 30 ident 451388 5236- 8750 against verified region 5218- 7513 - CANDIDATE hangs 5024 1288 Test read # 31 ident 529910 5237- 13987 against verified region 5218- 7513 - CANDIDATE hangs 5036 6468 Test read # 32 ident 497118 5237- 13424 against verified region 5218- 7513 - CANDIDATE hangs 5030 5886 Test read # 33 ident 447132 5237- 9116 against verified region 5218- 7513 - CANDIDATE hangs 5028 1633 Test read # 34 ident 278105 5238- 14019 against verified region 5218- 7513 - CANDIDATE hangs 5030 6485 Test read # 35 ident 41291 5238- 9041 against verified region 5218- 7513 - CANDIDATE hangs 5022 1562 Test read # 36 ident 496167 5240- 13996 against verified region 5218- 7513 - CANDIDATE hangs 5028 6440 Test read # 39 ident 135348 5244- 13995 against verified region 5218- 7513 - CANDIDATE hangs 5027 6438 Test read # 40 ident 135349 5244- 10684 against verified region 5218- 7513 - CANDIDATE hangs 5027 3177 Test read # 41 ident 41289 5244- 9033 against verified region 5218- 7513 - CANDIDATE hangs 5022 1550 Test read # 42 ident 282011 5245- 12680 against verified region 5218- 7513 - CANDIDATE hangs 5023 5145 Test read # 43 ident 90614 5246- 14004 against verified region 5218- 7513 - CANDIDATE hangs 5026 6468 Test read # 44 ident 451386 5246- 8730 against verified region 5218- 7513 - CANDIDATE hangs 5026 1250 Test read # 45 ident 282012 5247- 12684 against verified region 5218- 7513 - CANDIDATE hangs 5028 5149 Test read # 46 ident 529909 5249- 13978 against verified region 5218- 7513 - CANDIDATE hangs 5041 6449 Test read # 47 ident 533001 5249- 9489 against verified region 5218- 7513 - CANDIDATE hangs 5035 2003 Test read # 48 ident 207241 5252- 10229 against verified region 5218- 7513 - CANDIDATE hangs 5034 2743 Test read # 49 ident 282013 5257- 12699 against verified region 5218- 7513 - CANDIDATE hangs 5029 5164 Test read # 50 ident 41292 5259- 9037 against verified region 5218- 7513 - CANDIDATE hangs 5025 1557 Test read # 51 ident 330840 5262- 13348 against verified region 5218- 7513 - CANDIDATE hangs 5066 5822 Test read # 53 ident 425089 5279- 12647 against verified region 5218- 7513 - CANDIDATE hangs 5073 5116 Test read # 55 ident 282014 5364- 12581 against verified region 5218- 7513 - CANDIDATE hangs 5136 5037 Test read # 56 ident 266207 5364- 9360 against verified region 5218- 7513 - CANDIDATE hangs 5156 1878 Test read # 57 ident 178542 5392- 12013 against verified region 5218- 7513 - CANDIDATE hangs 5179 4493 Test read # 58 ident 553881 5432- 9905 against verified region 5218- 7513 - CANDIDATE hangs 5229 2427 Test read # 61 ident 17108 5664- 14006 against verified region 5218- 7513 - CANDIDATE hangs 5444 6457 Test read # 62 ident 660765 5669- 14003 against verified region 5218- 7513 - CANDIDATE hangs 5447 6447 Test read # 63 ident 17109 5711- 12994 against verified region 5218- 7513 - CANDIDATE hangs 5477 5438 Test read # 65 ident 152642 5893- 13121 against verified region 5218- 7513 - CANDIDATE hangs 5662 5572 Test read # 66 ident 606780 5947- 11061 against verified region 5218- 7513 - CANDIDATE hangs 5733 3555 Test read # 67 ident 462519 5959- 14019 against verified region 5218- 7513 - CANDIDATE hangs 5737 6484 Test read # 70 ident 233806 6195- 9828 against verified region 5218- 7513 - CANDIDATE hangs 5969 2325 Test read # 71 ident 151192 6203- 11860 against verified region 5218- 7513 - CANDIDATE hangs 5971 4327 Test read # 73 ident 151191 6252- 11673 against verified region 5218- 7513 - CANDIDATE hangs 6026 4166 Test read # 75 ident 5049 6394- 10987 against verified region 5218- 7513 - CANDIDATE hangs 6185 3527 Test read # 76 ident 86278 6462- 10422 against verified region 5218- 7513 - CANDIDATE hangs 6237 2927 Test read # 77 ident 459604 6513- 12775 against verified region 5218- 7513 - CANDIDATE hangs 6287 5242 Test read # 79 ident 208503 6561- 13045 against verified region 5218- 7513 - CANDIDATE hangs 6318 5481 Test read # 80 ident 632535 6628- 9725 against verified region 5218- 7513 - CANDIDATE hangs 6398 2248 Test read # 84 ident 628282 6760- 14030 against verified region 5218- 7513 - CANDIDATE hangs 6535 6541 Found appropriate intersecting read. createUnitigs()-- read 17406 place 2 edgeTo tig 6828 reads # 6 49526- 628282 verified 5218- 7513 position 212- 7513 covered 5016- 7135 BREAK at pos 5220 read 677117 isLow 1 sim 1.0000 Scan reads from #2 to #10 for low coordinate in verified region 1033-2739 Test read # 2 ident 340819 1033- 7276 against verified region 1033- 2739 Test read # 3 ident 503864 1231- 7025 against verified region 1033- 2739 - CANDIDATE hangs 5688 4298 - SAVED Test read # 4 ident 503869 1236- 6978 against verified region 1033- 2739 - CANDIDATE hangs 5689 4238 Test read # 5 ident 503867 1239- 7020 against verified region 1033- 2739 - CANDIDATE hangs 5689 4277 Test read # 6 ident 503866 1243- 7016 against verified region 1033- 2739 - CANDIDATE hangs 5688 4269 Test read # 7 ident 503868 1250- 7019 against verified region 1033- 2739 - CANDIDATE hangs 5698 4276 Test read # 8 ident 503865 1251- 7027 against verified region 1033- 2739 - CANDIDATE hangs 5706 4291 Test read # 9 ident 503870 1291- 7016 against verified region 1033- 2739 - CANDIDATE hangs 5741 4265 Test read # 10 ident 503863 1353- 7020 against verified region 1033- 2739 - CANDIDATE hangs 5803 4284 Found appropriate intersecting read. createUnitigs()-- read 17406 place 3 edgeTo tig 113733 reads # 2 340819- 503863 verified 1033- 2739 position -4451- 2739 covered 5489- 7135 NOT_SIMILAR createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #11 to #32 for low coordinate in verified region 4377-7186 Test read # 11 ident 122025 4377- 9308 against verified region 4377- 7186 Test read # 12 ident 208991 4508- 9487 against verified region 4377- 7186 - CANDIDATE hangs 3760 2331 - SAVED Test read # 13 ident 229085 4528- 11324 against verified region 4377- 7186 - CANDIDATE hangs 3764 4127 Test read # 14 ident 182693 4534- 9552 against verified region 4377- 7186 - CANDIDATE hangs 3773 2364 Test read # 15 ident 190325 4537- 9749 against verified region 4377- 7186 - CANDIDATE hangs 3764 2557 Test read # 17 ident 16758 4547- 9750 against verified region 4377- 7186 - CANDIDATE hangs 3793 2590 Test read # 18 ident 543377 4648- 9751 against verified region 4377- 7186 - CANDIDATE hangs 3895 2607 Test read # 19 ident 543376 4660- 9729 against verified region 4377- 7186 - CANDIDATE hangs 3894 2537 Test read # 20 ident 543378 4693- 9740 against verified region 4377- 7186 - CANDIDATE hangs 3931 2562 Test read # 21 ident 540213 4710- 9748 against verified region 4377- 7186 - CANDIDATE hangs 3954 2589 Test read # 22 ident 455961 4885- 11766 against verified region 4377- 7186 - CANDIDATE hangs 4131 4577 Test read # 23 ident 455963 4885- 11765 against verified region 4377- 7186 - CANDIDATE hangs 4130 4572 Test read # 24 ident 455964 4903- 10593 against verified region 4377- 7186 - CANDIDATE hangs 4145 3415 Test read # 25 ident 455962 4934- 11775 against verified region 4377- 7186 - CANDIDATE hangs 4181 4588 Test read # 26 ident 229086 5249- 10611 against verified region 4377- 7186 - CANDIDATE hangs 4484 3406 Test read # 27 ident 19697 5844- 14358 against verified region 4377- 7186 - CANDIDATE hangs 5088 7126 Test read # 28 ident 19698 5849- 14376 against verified region 4377- 7186 - CANDIDATE hangs 5092 7139 Test read # 29 ident 19699 5856- 14353 against verified region 4377- 7186 - CANDIDATE hangs 5092 7110 Test read # 30 ident 19700 5881- 12977 against verified region 4377- 7186 - CANDIDATE hangs 5130 5777 Test read # 31 ident 389624 5972- 9731 against verified region 4377- 7186 - CANDIDATE hangs 5209 2569 Test read # 32 ident 55297 6014- 8797 against verified region 4377- 7186 - CANDIDATE hangs 5253 1632 Found appropriate intersecting read. createUnitigs()-- read 297191 place 0 edgeTo tig 54 reads # 11 122025- 55297 verified 4377- 7186 position 757- 7186 covered 3644- 6382 BREAK at pos 4508 read 208991 isLow 1 sim 1.0000 createUnitigs()-- read 297191 place 1 edgeTo tig 469 reads # 0 17406- 232399 verified 2762- 9146 position 2762- 9167 covered 0- 6355 SELF EXPECTED_3' Scan reads from #0 to #0 for low coordinate in verified region 0-1140 Test read # 0 ident 135731 0- 6081 against verified region 0- 1140 Failed to find appropriate intersecting read. createUnitigs()-- read 297191 place 2 edgeTo tig 9429 reads # 0 135731- 135731 verified 0- 1140 position -5265- 1140 covered 5265- 6382 NO_OVERLAPS Scan reads from #13 to #19 for high coordinate in verified region 10187-12785 Test read # 13 ident 303462 8649- 11423 against verified region 10187- 12785 - CANDIDATE hangs 5141 1533 - SAVED Test read # 15 ident 303464 9029- 11424 against verified region 10187- 12785 - CANDIDATE hangs 5141 1164 - SAVED Test read # 19 ident 2550 11629- 12785 against verified region 10187- 12785 Found appropriate intersecting read. createUnitigs()-- read 297191 place 3 edgeTo tig 113238 reads # 13 303462- 2550 verified 12785- 10187 position 16568- 10187 covered 3792- 6382 BREAK at pos 11424 read 303464 isLow 0 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 471 len 21508 first read 28604 with 5 placements - last read 28603 with 6 placements Scan reads from #104 to #169 for high coordinate in verified region 5409-12881 Test read # 104 ident 244680 5332- 7528 against verified region 5409- 12881 - CANDIDATE hangs 1 -14717 - SAVED Test read # 105 ident 60558 5433- 8027 against verified region 5409- 12881 - CANDIDATE hangs 102 -14240 Test read # 106 ident 534820 5472- 7216 against verified region 5409- 12881 - CANDIDATE hangs 136 -15019 Test read # 107 ident 612671 5561- 9924 against verified region 5409- 12881 - CANDIDATE hangs 12346 -215 Test read # 108 ident 480760 5608- 8846 against verified region 5409- 12881 - CANDIDATE hangs 13441 -285 Test read # 109 ident 706712 5897- 10301 against verified region 5409- 12881 - CANDIDATE hangs 12011 -562 Test read # 110 ident 16127 5899- 8471 against verified region 5409- 12881 - CANDIDATE hangs 13792 -562 Test read # 111 ident 44898 5924- 7072 against verified region 5409- 12881 - CANDIDATE hangs 15157 -589 Test read # 112 ident 44894 5989- 12972 against verified region 5409- 12881 Test read # 113 ident 600677 6063- 8596 against verified region 5409- 12881 - CANDIDATE hangs 13672 -720 Test read # 114 ident 218623 6069- 11159 against verified region 5409- 12881 - CANDIDATE hangs 11167 -731 Test read # 115 ident 689098 6085- 8360 against verified region 5409- 12881 - CANDIDATE hangs 13908 -752 Test read # 116 ident 96994 6322- 7840 against verified region 5409- 12881 - CANDIDATE hangs 14406 -978 Test read # 117 ident 429918 6486- 11016 against verified region 5409- 12881 - CANDIDATE hangs 11319 -1140 Test read # 118 ident 218624 6526- 11900 against verified region 5409- 12881 - CANDIDATE hangs 10426 -1170 Test read # 119 ident 234007 7036- 11664 against verified region 5409- 12881 - CANDIDATE hangs 10657 -1664 Test read # 120 ident 419890 7209- 10255 against verified region 5409- 12881 - CANDIDATE hangs 12047 -1841 Test read # 121 ident 497665 7326- 11541 against verified region 5409- 12881 - CANDIDATE hangs 10778 -1948 Test read # 122 ident 372550 7470- 13228 against verified region 5409- 12881 Test read # 123 ident 281101 7472- 12925 against verified region 5409- 12881 Test read # 124 ident 352253 7481- 10896 against verified region 5409- 12881 - CANDIDATE hangs 2116 -11451 Test read # 125 ident 19778 7484- 12954 against verified region 5409- 12881 Test read # 126 ident 426924 7526- 9405 against verified region 5409- 12881 - CANDIDATE hangs 12896 -2168 Test read # 127 ident 615024 7590- 10052 against verified region 5409- 12881 - CANDIDATE hangs 12236 -2216 Test read # 128 ident 147262 7753- 9744 against verified region 5409- 12881 - CANDIDATE hangs 12547 -2380 Test read # 129 ident 16776 8271- 9452 against verified region 5409- 12881 - CANDIDATE hangs 12836 -2888 Test read # 130 ident 19779 8328- 12941 against verified region 5409- 12881 Test read # 131 ident 24210 8415- 12934 against verified region 5409- 12881 Test read # 132 ident 149878 8447- 12943 against verified region 5409- 12881 Test read # 133 ident 193055 8478- 12875 against verified region 5409- 12881 - CANDIDATE hangs 3109 -9518 Test read # 134 ident 366480 8497- 11026 against verified region 5409- 12881 - CANDIDATE hangs 3094 -11296 Test read # 135 ident 191958 8522- 12662 against verified region 5409- 12881 - CANDIDATE hangs 3132 -9700 Test read # 136 ident 554168 8565- 12939 against verified region 5409- 12881 Test read # 137 ident 208315 8664- 10054 against verified region 5409- 12881 - CANDIDATE hangs 12240 -3258 Test read # 138 ident 409936 8692- 12933 against verified region 5409- 12881 Test read # 139 ident 81470 8845- 12949 against verified region 5409- 12881 Test read # 140 ident 254683 8848- 12927 against verified region 5409- 12881 Test read # 141 ident 158305 8922- 12912 against verified region 5409- 12881 Test read # 142 ident 96267 9212- 11789 against verified region 5409- 12881 - CANDIDATE hangs 3787 -10541 Test read # 143 ident 537144 9217- 12917 against verified region 5409- 12881 Test read # 144 ident 145182 9237- 11825 against verified region 5409- 12881 - CANDIDATE hangs 3813 -10514 Test read # 145 ident 498847 9318- 10631 against verified region 5409- 12881 - CANDIDATE hangs 3900 -11696 Test read # 146 ident 620869 9355- 10757 against verified region 5409- 12881 - CANDIDATE hangs 3930 -11566 Test read # 147 ident 134799 9366- 12930 against verified region 5409- 12881 Test read # 148 ident 649242 9484- 12802 against verified region 5409- 12881 - CANDIDATE hangs 4050 -9547 Test read # 149 ident 25375 9574- 12965 against verified region 5409- 12881 Test read # 150 ident 572601 9635- 12695 against verified region 5409- 12881 - CANDIDATE hangs 4206 -9667 Test read # 151 ident 185998 9638- 12390 against verified region 5409- 12881 - CANDIDATE hangs 4205 -9945 Test read # 152 ident 157121 9671- 12704 against verified region 5409- 12881 - CANDIDATE hangs 4238 -9660 Test read # 153 ident 642503 9954- 12917 against verified region 5409- 12881 Test read # 154 ident 208410 9955- 12901 against verified region 5409- 12881 Test read # 155 ident 193054 9959- 12881 against verified region 5409- 12881 Test read # 156 ident 123415 9981- 12881 against verified region 5409- 12881 Test read # 157 ident 587491 10015- 12873 against verified region 5409- 12881 - CANDIDATE hangs 9463 -4586 Test read # 158 ident 507182 10050- 11570 against verified region 5409- 12881 - CANDIDATE hangs 4613 -10768 Test read # 159 ident 208823 10063- 12942 against verified region 5409- 12881 Test read # 160 ident 520148 10107- 11472 against verified region 5409- 12881 - CANDIDATE hangs 4677 -10872 Test read # 161 ident 302845 10116- 12665 against verified region 5409- 12881 - CANDIDATE hangs 4686 -9707 Test read # 162 ident 642504 10179- 12927 against verified region 5409- 12881 Test read # 163 ident 669907 10276- 12923 against verified region 5409- 12881 Test read # 164 ident 140100 10465- 12931 against verified region 5409- 12881 Test read # 165 ident 99379 10627- 12815 against verified region 5409- 12881 - CANDIDATE hangs 5184 -9559 Test read # 166 ident 668569 10641- 11923 against verified region 5409- 12881 - CANDIDATE hangs 10415 -5200 Test read # 167 ident 294924 11014- 12619 against verified region 5409- 12881 - CANDIDATE hangs 9729 -5565 Test read # 168 ident 507368 11044- 12861 against verified region 5409- 12881 - CANDIDATE hangs 5593 -9514 Test read # 169 ident 436136 11169- 12793 against verified region 5409- 12881 - CANDIDATE hangs 5710 -9578 Found appropriate intersecting read. createUnitigs()-- read 28604 place 0 edgeTo tig 306 reads # 104 244680- 436136 verified 5409- 12881 position 5409- 22339 covered 1- 7351 EXPECTED_5' Scan reads from #1 to #174 for low coordinate in verified region 5321-13228 Test read # 1 ident 500223 165- 7318 against verified region 5321- 13228 Test read # 3 ident 627546 227- 10949 against verified region 5321- 13228 Test read # 4 ident 716594 301- 8023 against verified region 5321- 13228 Test read # 5 ident 521555 450- 7233 against verified region 5321- 13228 Test read # 6 ident 521553 477- 6861 against verified region 5321- 13228 Test read # 7 ident 521554 518- 7015 against verified region 5321- 13228 Test read # 10 ident 425938 672- 7356 against verified region 5321- 13228 Test read # 11 ident 434283 724- 6620 against verified region 5321- 13228 Test read # 14 ident 137688 957- 7424 against verified region 5321- 13228 Test read # 16 ident 372210 1288- 7297 against verified region 5321- 13228 Test read # 18 ident 689097 1580- 9251 against verified region 5321- 13228 Test read # 20 ident 433859 2154- 9256 against verified region 5321- 13228 Test read # 22 ident 288011 2179- 8700 against verified region 5321- 13228 Test read # 23 ident 433860 2180- 8516 against verified region 5321- 13228 Test read # 24 ident 283770 2376- 6665 against verified region 5321- 13228 Test read # 25 ident 81343 2381- 8454 against verified region 5321- 13228 Test read # 26 ident 488875 2384- 7085 against verified region 5321- 13228 Test read # 27 ident 81345 2400- 8450 against verified region 5321- 13228 Test read # 28 ident 81344 2401- 8269 against verified region 5321- 13228 Test read # 29 ident 81346 2404- 8454 against verified region 5321- 13228 Test read # 30 ident 81342 2558- 8448 against verified region 5321- 13228 Test read # 31 ident 57284 2582- 7236 against verified region 5321- 13228 Test read # 32 ident 231344 2591- 6483 against verified region 5321- 13228 Test read # 34 ident 695912 2703- 6709 against verified region 5321- 13228 Test read # 36 ident 648550 2846- 7713 against verified region 5321- 13228 Test read # 37 ident 437764 2891- 8141 against verified region 5321- 13228 Test read # 39 ident 710147 2907- 6286 against verified region 5321- 13228 Test read # 40 ident 296965 2925- 10525 against verified region 5321- 13228 Test read # 41 ident 296966 2939- 11311 against verified region 5321- 13228 Test read # 43 ident 612668 3151- 10025 against verified region 5321- 13228 Test read # 44 ident 612666 3168- 10051 against verified region 5321- 13228 Test read # 45 ident 612670 3173- 10030 against verified region 5321- 13228 Test read # 46 ident 612664 3200- 10056 against verified region 5321- 13228 Test read # 49 ident 680664 3253- 8726 against verified region 5321- 13228 Test read # 51 ident 379758 3326- 6972 against verified region 5321- 13228 Test read # 53 ident 100147 3347- 12494 against verified region 5321- 13228 Test read # 54 ident 119035 3362- 10186 against verified region 5321- 13228 Test read # 55 ident 100148 3385- 11888 against verified region 5321- 13228 Test read # 56 ident 214382 3392- 9000 against verified region 5321- 13228 Test read # 57 ident 437762 3488- 8488 against verified region 5321- 13228 Test read # 58 ident 346316 3971- 10247 against verified region 5321- 13228 Test read # 59 ident 709328 3993- 10019 against verified region 5321- 13228 Test read # 60 ident 464269 4047- 8743 against verified region 5321- 13228 Test read # 61 ident 619534 4176- 11285 against verified region 5321- 13228 Test read # 62 ident 348461 4177- 9224 against verified region 5321- 13228 Test read # 63 ident 469389 4227- 8768 against verified region 5321- 13228 Test read # 64 ident 556814 4232- 7235 against verified region 5321- 13228 Test read # 65 ident 538798 4234- 6963 against verified region 5321- 13228 Test read # 66 ident 335297 4251- 10320 against verified region 5321- 13228 Test read # 67 ident 335296 4287- 10243 against verified region 5321- 13228 Test read # 68 ident 234006 4297- 11665 against verified region 5321- 13228 Test read # 69 ident 166045 4313- 10181 against verified region 5321- 13228 Test read # 70 ident 139429 4345- 6188 against verified region 5321- 13228 Test read # 71 ident 173860 4362- 6251 against verified region 5321- 13228 Test read # 72 ident 166046 4422- 10157 against verified region 5321- 13228 Test read # 73 ident 631753 4443- 9813 against verified region 5321- 13228 Test read # 75 ident 196502 4550- 6353 against verified region 5321- 13228 Test read # 77 ident 488350 4596- 10391 against verified region 5321- 13228 Test read # 80 ident 488345 4606- 11120 against verified region 5321- 13228 Test read # 81 ident 160564 4620- 11255 against verified region 5321- 13228 Test read # 82 ident 488347 4621- 11133 against verified region 5321- 13228 Test read # 83 ident 488346 4628- 10592 against verified region 5321- 13228 Test read # 84 ident 372214 4632- 7299 against verified region 5321- 13228 Test read # 85 ident 233527 4634- 7905 against verified region 5321- 13228 Test read # 86 ident 488348 4644- 11075 against verified region 5321- 13228 Test read # 87 ident 705440 4646- 11135 against verified region 5321- 13228 Test read # 88 ident 366481 4685- 11318 against verified region 5321- 13228 Test read # 89 ident 366482 4750- 11235 against verified region 5321- 13228 Test read # 90 ident 366483 4753- 11320 against verified region 5321- 13228 Test read # 91 ident 122732 4787- 8655 against verified region 5321- 13228 Test read # 92 ident 402860 4792- 11977 against verified region 5321- 13228 Test read # 93 ident 495573 4806- 13005 against verified region 5321- 13228 Test read # 94 ident 242453 4820- 6001 against verified region 5321- 13228 Test read # 95 ident 420499 4845- 8222 against verified region 5321- 13228 Test read # 96 ident 142480 4849- 12928 against verified region 5321- 13228 Test read # 97 ident 61901 4968- 6116 against verified region 5321- 13228 Test read # 98 ident 706713 5099- 10530 against verified region 5321- 13228 Test read # 99 ident 60557 5167- 11488 against verified region 5321- 13228 Test read # 100 ident 60556 5170- 11501 against verified region 5321- 13228 Test read # 101 ident 110628 5259- 12921 against verified region 5321- 13228 Test read # 102 ident 132923 5284- 7572 against verified region 5321- 13228 Test read # 103 ident 648551 5327- 7882 against verified region 5321- 13228 - CANDIDATE hangs 14365 -7 Test read # 104 ident 244680 5332- 7528 against verified region 5321- 13228 - CANDIDATE hangs 1 -14717 Test read # 105 ident 60558 5433- 8027 against verified region 5321- 13228 - CANDIDATE hangs 102 -14240 Test read # 106 ident 534820 5472- 7216 against verified region 5321- 13228 - CANDIDATE hangs 136 -15019 Test read # 107 ident 612671 5561- 9924 against verified region 5321- 13228 - CANDIDATE hangs 12346 -215 Test read # 108 ident 480760 5608- 8846 against verified region 5321- 13228 - CANDIDATE hangs 13441 -285 Test read # 109 ident 706712 5897- 10301 against verified region 5321- 13228 - CANDIDATE hangs 12011 -562 Test read # 110 ident 16127 5899- 8471 against verified region 5321- 13228 - CANDIDATE hangs 13792 -562 Test read # 111 ident 44898 5924- 7072 against verified region 5321- 13228 - CANDIDATE hangs 15157 -589 Test read # 112 ident 44894 5989- 12972 against verified region 5321- 13228 - CANDIDATE hangs 9414 -654 Test read # 113 ident 600677 6063- 8596 against verified region 5321- 13228 - CANDIDATE hangs 13672 -720 Test read # 114 ident 218623 6069- 11159 against verified region 5321- 13228 - CANDIDATE hangs 11167 -731 Test read # 115 ident 689098 6085- 8360 against verified region 5321- 13228 - CANDIDATE hangs 13908 -752 Test read # 116 ident 96994 6322- 7840 against verified region 5321- 13228 - CANDIDATE hangs 14406 -978 Test read # 117 ident 429918 6486- 11016 against verified region 5321- 13228 - CANDIDATE hangs 11319 -1140 Test read # 118 ident 218624 6526- 11900 against verified region 5321- 13228 - CANDIDATE hangs 10426 -1170 Test read # 119 ident 234007 7036- 11664 against verified region 5321- 13228 - CANDIDATE hangs 10657 -1664 Test read # 120 ident 419890 7209- 10255 against verified region 5321- 13228 - CANDIDATE hangs 12047 -1841 Test read # 121 ident 497665 7326- 11541 against verified region 5321- 13228 - CANDIDATE hangs 10778 -1948 Test read # 122 ident 372550 7470- 13228 against verified region 5321- 13228 - CANDIDATE hangs 9186 -2106 Test read # 123 ident 281101 7472- 12925 against verified region 5321- 13228 - CANDIDATE hangs 9421 -2099 Test read # 124 ident 352253 7481- 10896 against verified region 5321- 13228 - CANDIDATE hangs 2116 -11451 Test read # 125 ident 19778 7484- 12954 against verified region 5321- 13228 - CANDIDATE hangs 9420 -2132 Test read # 126 ident 426924 7526- 9405 against verified region 5321- 13228 - CANDIDATE hangs 12896 -2168 Test read # 127 ident 615024 7590- 10052 against verified region 5321- 13228 - CANDIDATE hangs 12236 -2216 Test read # 128 ident 147262 7753- 9744 against verified region 5321- 13228 - CANDIDATE hangs 12547 -2380 Test read # 129 ident 16776 8271- 9452 against verified region 5321- 13228 - CANDIDATE hangs 12836 -2888 Test read # 130 ident 19779 8328- 12941 against verified region 5321- 13228 - CANDIDATE hangs 9420 -2940 Test read # 131 ident 24210 8415- 12934 against verified region 5321- 13228 - CANDIDATE hangs 9440 -3028 Test read # 132 ident 149878 8447- 12943 against verified region 5321- 13228 - CANDIDATE hangs 9421 -3058 Test read # 133 ident 193055 8478- 12875 against verified region 5321- 13228 - CANDIDATE hangs 3109 -9518 Test read # 134 ident 366480 8497- 11026 against verified region 5321- 13228 - CANDIDATE hangs 3094 -11296 Test read # 135 ident 191958 8522- 12662 against verified region 5321- 13228 - CANDIDATE hangs 3132 -9700 Test read # 136 ident 554168 8565- 12939 against verified region 5321- 13228 - CANDIDATE hangs 9422 -3187 Test read # 137 ident 208315 8664- 10054 against verified region 5321- 13228 - CANDIDATE hangs 12240 -3258 Test read # 138 ident 409936 8692- 12933 against verified region 5321- 13228 - CANDIDATE hangs 9450 -3309 Test read # 139 ident 81470 8845- 12949 against verified region 5321- 13228 - CANDIDATE hangs 9413 -3448 Test read # 140 ident 254683 8848- 12927 against verified region 5321- 13228 - CANDIDATE hangs 9421 -3440 Test read # 141 ident 158305 8922- 12912 against verified region 5321- 13228 - CANDIDATE hangs 9450 -3522 Test read # 142 ident 96267 9212- 11789 against verified region 5321- 13228 - CANDIDATE hangs 3787 -10541 Test read # 143 ident 537144 9217- 12917 against verified region 5321- 13228 - CANDIDATE hangs 9432 -3799 Test read # 144 ident 145182 9237- 11825 against verified region 5321- 13228 - CANDIDATE hangs 3813 -10514 Test read # 145 ident 498847 9318- 10631 against verified region 5321- 13228 - CANDIDATE hangs 3900 -11696 Test read # 146 ident 620869 9355- 10757 against verified region 5321- 13228 - CANDIDATE hangs 3930 -11566 Test read # 147 ident 134799 9366- 12930 against verified region 5321- 13228 - CANDIDATE hangs 9428 -3954 Test read # 148 ident 649242 9484- 12802 against verified region 5321- 13228 - CANDIDATE hangs 4050 -9547 Test read # 149 ident 25375 9574- 12965 against verified region 5321- 13228 - CANDIDATE hangs 9395 -4155 Test read # 150 ident 572601 9635- 12695 against verified region 5321- 13228 - CANDIDATE hangs 4206 -9667 Test read # 151 ident 185998 9638- 12390 against verified region 5321- 13228 - CANDIDATE hangs 4205 -9945 Test read # 152 ident 157121 9671- 12704 against verified region 5321- 13228 - CANDIDATE hangs 4238 -9660 Test read # 153 ident 642503 9954- 12917 against verified region 5321- 13228 - CANDIDATE hangs 9441 -4531 Test read # 154 ident 208410 9955- 12901 against verified region 5321- 13228 - CANDIDATE hangs 9456 -4527 Test read # 155 ident 193054 9959- 12881 against verified region 5321- 13228 - CANDIDATE hangs 4537 -9518 Test read # 156 ident 123415 9981- 12881 against verified region 5321- 13228 - CANDIDATE hangs 9474 -4559 Test read # 157 ident 587491 10015- 12873 against verified region 5321- 13228 - CANDIDATE hangs 9463 -4586 Test read # 158 ident 507182 10050- 11570 against verified region 5321- 13228 - CANDIDATE hangs 4613 -10768 Test read # 159 ident 208823 10063- 12942 against verified region 5321- 13228 - CANDIDATE hangs 9419 -4637 Test read # 160 ident 520148 10107- 11472 against verified region 5321- 13228 - CANDIDATE hangs 4677 -10872 Test read # 161 ident 302845 10116- 12665 against verified region 5321- 13228 - CANDIDATE hangs 4686 -9707 Test read # 162 ident 642504 10179- 12927 against verified region 5321- 13228 - CANDIDATE hangs 9423 -4745 Test read # 163 ident 669907 10276- 12923 against verified region 5321- 13228 - CANDIDATE hangs 9420 -4841 Test read # 164 ident 140100 10465- 12931 against verified region 5321- 13228 - CANDIDATE hangs 9427 -5029 Test read # 165 ident 99379 10627- 12815 against verified region 5321- 13228 - CANDIDATE hangs 5184 -9559 Test read # 166 ident 668569 10641- 11923 against verified region 5321- 13228 - CANDIDATE hangs 10415 -5200 Test read # 167 ident 294924 11014- 12619 against verified region 5321- 13228 - CANDIDATE hangs 9729 -5565 Test read # 168 ident 507368 11044- 12861 against verified region 5321- 13228 - CANDIDATE hangs 5593 -9514 Test read # 169 ident 436136 11169- 12793 against verified region 5321- 13228 - CANDIDATE hangs 5710 -9578 Test read # 170 ident 323052 11183- 12941 against verified region 5321- 13228 - CANDIDATE hangs 9421 -5732 Test read # 172 ident 675543 11735- 12939 against verified region 5321- 13228 - CANDIDATE hangs 9422 -6270 Test read # 174 ident 423644 11870- 12897 against verified region 5321- 13228 - CANDIDATE hangs 9463 -6399 Failed to find appropriate intersecting read. createUnitigs()-- read 28604 place 1 edgeTo tig 306 reads # 1 500223- 423644 verified 13228- 5321 position 22297- 5321 covered 9186- 16865 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 28604 place 2 edgeTo tig 471 reads # 6 372552- 538403 verified 4276- 19104 position 2208- 19104 covered 0- 16864 SELF createUnitigs()-- read 28604 place 3 edgeTo tig 471 reads # 1 365739- 204969 verified 9580- 2284 position 18988- 2127 covered 9412- 16723 SELF EXPECTED_5' Scan reads from #117 to #305 for low coordinate in verified region 25908-33446 Test read # 117 ident 642252 14425- 27879 against verified region 25908- 33446 Test read # 123 ident 710145 14656- 27035 against verified region 25908- 33446 Test read # 126 ident 710146 14764- 27029 against verified region 25908- 33446 Test read # 167 ident 163167 16188- 26807 against verified region 25908- 33446 Test read # 174 ident 645883 16489- 28838 against verified region 25908- 33446 Test read # 179 ident 194006 16667- 26587 against verified region 25908- 33446 Test read # 189 ident 159298 17240- 29635 against verified region 25908- 33446 Test read # 194 ident 83280 17461- 27161 against verified region 25908- 33446 Test read # 195 ident 682705 17469- 28232 against verified region 25908- 33446 Test read # 200 ident 131718 17607- 27437 against verified region 25908- 33446 Test read # 201 ident 131719 17624- 26647 against verified region 25908- 33446 Test read # 202 ident 131717 17632- 27404 against verified region 25908- 33446 Test read # 204 ident 698702 17669- 27373 against verified region 25908- 33446 Test read # 209 ident 348416 17911- 31526 against verified region 25908- 33446 Test read # 213 ident 359909 18204- 30685 against verified region 25908- 33446 Test read # 226 ident 591921 18734- 29357 against verified region 25908- 33446 Test read # 230 ident 156595 18835- 33390 against verified region 25908- 33446 Test read # 233 ident 116514 18918- 26440 against verified region 25908- 33446 Test read # 235 ident 538797 19176- 27750 against verified region 25908- 33446 Test read # 237 ident 365817 19221- 26593 against verified region 25908- 33446 Test read # 239 ident 241713 19343- 29520 against verified region 25908- 33446 Test read # 240 ident 144097 19358- 31226 against verified region 25908- 33446 Test read # 241 ident 693336 19685- 27664 against verified region 25908- 33446 Test read # 244 ident 627545 19885- 31450 against verified region 25908- 33446 Test read # 245 ident 627544 19896- 30823 against verified region 25908- 33446 Test read # 248 ident 152909 20369- 29875 against verified region 25908- 33446 Test read # 249 ident 440246 20534- 29034 against verified region 25908- 33446 Test read # 250 ident 440247 20543- 27046 against verified region 25908- 33446 Test read # 251 ident 220274 20617- 27787 against verified region 25908- 33446 Test read # 252 ident 639646 20848- 27693 against verified region 25908- 33446 Test read # 253 ident 531481 21221- 29945 against verified region 25908- 33446 Test read # 254 ident 152910 21251- 29872 against verified region 25908- 33446 Test read # 255 ident 100939 21335- 33390 against verified region 25908- 33446 Test read # 256 ident 107887 21353- 33395 against verified region 25908- 33446 Test read # 257 ident 511949 21387- 32636 against verified region 25908- 33446 Test read # 258 ident 425937 21396- 30031 against verified region 25908- 33446 Test read # 259 ident 159297 21605- 29631 against verified region 25908- 33446 Test read # 260 ident 562444 21904- 30682 against verified region 25908- 33446 Test read # 261 ident 372209 21962- 27869 against verified region 25908- 33446 Test read # 262 ident 372211 21963- 27869 against verified region 25908- 33446 Test read # 263 ident 372212 21970- 27865 against verified region 25908- 33446 Test read # 264 ident 372213 21975- 27872 against verified region 25908- 33446 Test read # 265 ident 177410 22255- 30833 against verified region 25908- 33446 Test read # 266 ident 212352 22300- 30349 against verified region 25908- 33446 Test read # 267 ident 163170 22308- 29408 against verified region 25908- 33446 Test read # 268 ident 577630 22318- 29843 against verified region 25908- 33446 Test read # 269 ident 577628 22320- 29835 against verified region 25908- 33446 Test read # 270 ident 577629 22323- 29838 against verified region 25908- 33446 Test read # 271 ident 577632 22326- 28782 against verified region 25908- 33446 Test read # 272 ident 577627 22332- 29850 against verified region 25908- 33446 Test read # 273 ident 577631 22349- 29826 against verified region 25908- 33446 Test read # 274 ident 358527 22395- 30927 against verified region 25908- 33446 Test read # 275 ident 140953 22641- 32434 against verified region 25908- 33446 Test read # 276 ident 464270 22672- 28613 against verified region 25908- 33446 Test read # 277 ident 214383 22757- 29564 against verified region 25908- 33446 Test read # 278 ident 288010 22798- 29254 against verified region 25908- 33446 Test read # 279 ident 428196 22809- 29315 against verified region 25908- 33446 Test read # 280 ident 239393 22898- 33391 against verified region 25908- 33446 Test read # 281 ident 81471 23513- 33402 against verified region 25908- 33446 Test read # 282 ident 437763 23551- 29035 against verified region 25908- 33446 Test read # 283 ident 296967 23584- 31787 against verified region 25908- 33446 Test read # 284 ident 296968 23584- 29121 against verified region 25908- 33446 Test read # 285 ident 196076 23736- 30516 against verified region 25908- 33446 Test read # 286 ident 668413 23737- 33358 against verified region 25908- 33446 Test read # 287 ident 196075 23739- 33446 against verified region 25908- 33446 Test read # 288 ident 612667 23792- 30568 against verified region 25908- 33446 Test read # 289 ident 612665 23796- 30565 against verified region 25908- 33446 Test read # 290 ident 612669 23812- 30566 against verified region 25908- 33446 Test read # 291 ident 418554 24000- 32709 against verified region 25908- 33446 Test read # 292 ident 490949 24620- 33393 against verified region 25908- 33446 Test read # 293 ident 713368 24703- 33170 against verified region 25908- 33446 Test read # 294 ident 649241 24742- 33263 against verified region 25908- 33446 Test read # 295 ident 166044 24943- 30671 against verified region 25908- 33446 Test read # 296 ident 631754 25078- 32253 against verified region 25908- 33446 Test read # 297 ident 488349 25230- 31553 against verified region 25908- 33446 Test read # 298 ident 122733 25293- 32798 against verified region 25908- 33446 Test read # 299 ident 140829 25618- 33394 against verified region 25908- 33446 Test read # 300 ident 204802 25692- 33412 against verified region 25908- 33446 Test read # 301 ident 204801 25705- 33406 against verified region 25908- 33446 Test read # 302 ident 204803 25717- 33396 against verified region 25908- 33446 Test read # 303 ident 110629 25847- 33382 against verified region 25908- 33446 Test read # 304 ident 96264 29738- 33387 against verified region 25908- 33446 - CANDIDATE hangs 9412 -3796 Test read # 305 ident 101467 29931- 33401 against verified region 25908- 33446 - CANDIDATE hangs 9412 -3991 Failed to find appropriate intersecting read. createUnitigs()-- read 28604 place 4 edgeTo tig 113065 reads # 117 642252- 101467 verified 33446- 25908 position 42806- 25908 covered 9409- 16865 EXPECTED_5' NO_OVERLAPS Scan reads from #33 to #172 for low coordinate in verified region 5422-13228 Test read # 33 ident 689106 2685- 6285 against verified region 5422- 13228 Test read # 34 ident 695912 2703- 6709 against verified region 5422- 13228 Test read # 36 ident 648550 2846- 7713 against verified region 5422- 13228 Test read # 37 ident 437764 2891- 8141 against verified region 5422- 13228 Test read # 39 ident 710147 2907- 6286 against verified region 5422- 13228 Test read # 40 ident 296965 2925- 10525 against verified region 5422- 13228 Test read # 41 ident 296966 2939- 11311 against verified region 5422- 13228 Test read # 43 ident 612668 3151- 10025 against verified region 5422- 13228 Test read # 44 ident 612666 3168- 10051 against verified region 5422- 13228 Test read # 45 ident 612670 3173- 10030 against verified region 5422- 13228 Test read # 46 ident 612664 3200- 10056 against verified region 5422- 13228 Test read # 49 ident 680664 3253- 8726 against verified region 5422- 13228 Test read # 51 ident 379758 3326- 6972 against verified region 5422- 13228 Test read # 53 ident 100147 3347- 12494 against verified region 5422- 13228 Test read # 54 ident 119035 3362- 10186 against verified region 5422- 13228 Test read # 55 ident 100148 3385- 11888 against verified region 5422- 13228 Test read # 56 ident 214382 3392- 9000 against verified region 5422- 13228 Test read # 57 ident 437762 3488- 8488 against verified region 5422- 13228 Test read # 58 ident 346316 3971- 10247 against verified region 5422- 13228 Test read # 59 ident 709328 3993- 10019 against verified region 5422- 13228 Test read # 60 ident 464269 4047- 8743 against verified region 5422- 13228 Test read # 61 ident 619534 4176- 11285 against verified region 5422- 13228 Test read # 62 ident 348461 4177- 9224 against verified region 5422- 13228 Test read # 63 ident 469389 4227- 8768 against verified region 5422- 13228 Test read # 64 ident 556814 4232- 7235 against verified region 5422- 13228 Test read # 65 ident 538798 4234- 6963 against verified region 5422- 13228 Test read # 66 ident 335297 4251- 10320 against verified region 5422- 13228 Test read # 67 ident 335296 4287- 10243 against verified region 5422- 13228 Test read # 68 ident 234006 4297- 11665 against verified region 5422- 13228 Test read # 69 ident 166045 4313- 10181 against verified region 5422- 13228 Test read # 70 ident 139429 4345- 6188 against verified region 5422- 13228 Test read # 71 ident 173860 4362- 6251 against verified region 5422- 13228 Test read # 72 ident 166046 4422- 10157 against verified region 5422- 13228 Test read # 73 ident 631753 4443- 9813 against verified region 5422- 13228 Test read # 75 ident 196502 4550- 6353 against verified region 5422- 13228 Test read # 77 ident 488350 4596- 10391 against verified region 5422- 13228 Test read # 80 ident 488345 4606- 11120 against verified region 5422- 13228 Test read # 81 ident 160564 4620- 11255 against verified region 5422- 13228 Test read # 82 ident 488347 4621- 11133 against verified region 5422- 13228 Test read # 83 ident 488346 4628- 10592 against verified region 5422- 13228 Test read # 84 ident 372214 4632- 7299 against verified region 5422- 13228 Test read # 85 ident 233527 4634- 7905 against verified region 5422- 13228 Test read # 86 ident 488348 4644- 11075 against verified region 5422- 13228 Test read # 87 ident 705440 4646- 11135 against verified region 5422- 13228 Test read # 88 ident 366481 4685- 11318 against verified region 5422- 13228 Test read # 89 ident 366482 4750- 11235 against verified region 5422- 13228 Test read # 90 ident 366483 4753- 11320 against verified region 5422- 13228 Test read # 91 ident 122732 4787- 8655 against verified region 5422- 13228 Test read # 92 ident 402860 4792- 11977 against verified region 5422- 13228 Test read # 93 ident 495573 4806- 13005 against verified region 5422- 13228 Test read # 94 ident 242453 4820- 6001 against verified region 5422- 13228 Test read # 95 ident 420499 4845- 8222 against verified region 5422- 13228 Test read # 96 ident 142480 4849- 12928 against verified region 5422- 13228 Test read # 97 ident 61901 4968- 6116 against verified region 5422- 13228 Test read # 98 ident 706713 5099- 10530 against verified region 5422- 13228 Test read # 99 ident 60557 5167- 11488 against verified region 5422- 13228 Test read # 100 ident 60556 5170- 11501 against verified region 5422- 13228 Test read # 101 ident 110628 5259- 12921 against verified region 5422- 13228 Test read # 102 ident 132923 5284- 7572 against verified region 5422- 13228 Test read # 103 ident 648551 5327- 7882 against verified region 5422- 13228 Test read # 104 ident 244680 5332- 7528 against verified region 5422- 13228 Test read # 105 ident 60558 5433- 8027 against verified region 5422- 13228 - CANDIDATE hangs 14190 -113 Test read # 106 ident 534820 5472- 7216 against verified region 5422- 13228 - CANDIDATE hangs 14968 -145 Test read # 107 ident 612671 5561- 9924 against verified region 5422- 13228 - CANDIDATE hangs 12306 -213 Test read # 108 ident 480760 5608- 8846 against verified region 5422- 13228 - CANDIDATE hangs 13401 -286 Test read # 109 ident 706712 5897- 10301 against verified region 5422- 13228 - CANDIDATE hangs 11971 -564 Test read # 110 ident 16127 5899- 8471 against verified region 5422- 13228 - CANDIDATE hangs 13752 -564 Test read # 111 ident 44898 5924- 7072 against verified region 5422- 13228 - CANDIDATE hangs 15114 -591 Test read # 112 ident 44894 5989- 12972 against verified region 5422- 13228 - CANDIDATE hangs 9390 -656 Test read # 113 ident 600677 6063- 8596 against verified region 5422- 13228 - CANDIDATE hangs 13632 -722 Test read # 114 ident 218623 6069- 11159 against verified region 5422- 13228 - CANDIDATE hangs 11126 -733 Test read # 115 ident 689098 6085- 8360 against verified region 5422- 13228 - CANDIDATE hangs 13868 -754 Test read # 116 ident 96994 6322- 7840 against verified region 5422- 13228 - CANDIDATE hangs 14365 -981 Test read # 117 ident 429918 6486- 11016 against verified region 5422- 13228 - CANDIDATE hangs 11278 -1143 Test read # 118 ident 218624 6526- 11900 against verified region 5422- 13228 - CANDIDATE hangs 10383 -1173 Test read # 119 ident 234007 7036- 11664 against verified region 5422- 13228 - CANDIDATE hangs 10614 -1667 Test read # 120 ident 419890 7209- 10255 against verified region 5422- 13228 - CANDIDATE hangs 12007 -1843 Test read # 121 ident 497665 7326- 11541 against verified region 5422- 13228 - CANDIDATE hangs 10736 -1950 Test read # 122 ident 372550 7470- 13228 against verified region 5422- 13228 - CANDIDATE hangs 2096 -9170 Test read # 123 ident 281101 7472- 12925 against verified region 5422- 13228 - CANDIDATE hangs 2089 -9407 Test read # 124 ident 352253 7481- 10896 against verified region 5422- 13228 - CANDIDATE hangs 11402 -2126 Test read # 125 ident 19778 7484- 12954 against verified region 5422- 13228 - CANDIDATE hangs 2122 -9406 Test read # 126 ident 426924 7526- 9405 against verified region 5422- 13228 - CANDIDATE hangs 12856 -2169 Test read # 127 ident 615024 7590- 10052 against verified region 5422- 13228 - CANDIDATE hangs 12196 -2217 Test read # 128 ident 147262 7753- 9744 against verified region 5422- 13228 - CANDIDATE hangs 12507 -2380 Test read # 129 ident 16776 8271- 9452 against verified region 5422- 13228 - CANDIDATE hangs 2876 -12809 Test read # 130 ident 19779 8328- 12941 against verified region 5422- 13228 - CANDIDATE hangs 2927 -9406 Test read # 131 ident 24210 8415- 12934 against verified region 5422- 13228 - CANDIDATE hangs 3015 -9427 Test read # 132 ident 149878 8447- 12943 against verified region 5422- 13228 - CANDIDATE hangs 3045 -9407 Test read # 133 ident 193055 8478- 12875 against verified region 5422- 13228 - CANDIDATE hangs 3105 -9479 Test read # 134 ident 366480 8497- 11026 against verified region 5422- 13228 - CANDIDATE hangs 11247 -3102 Test read # 135 ident 191958 8522- 12662 against verified region 5422- 13228 - CANDIDATE hangs 3128 -9662 Test read # 136 ident 554168 8565- 12939 against verified region 5422- 13228 - CANDIDATE hangs 3173 -9408 Test read # 137 ident 208315 8664- 10054 against verified region 5422- 13228 - CANDIDATE hangs 12200 -3257 Test read # 138 ident 409936 8692- 12933 against verified region 5422- 13228 - CANDIDATE hangs 3295 -9437 Test read # 139 ident 81470 8845- 12949 against verified region 5422- 13228 - CANDIDATE hangs 3434 -9399 Test read # 140 ident 254683 8848- 12927 against verified region 5422- 13228 - CANDIDATE hangs 3426 -9407 Test read # 141 ident 158305 8922- 12912 against verified region 5422- 13228 - CANDIDATE hangs 3508 -9437 Test read # 142 ident 96267 9212- 11789 against verified region 5422- 13228 - CANDIDATE hangs 10489 -3795 Test read # 143 ident 537144 9217- 12917 against verified region 5422- 13228 - CANDIDATE hangs 3785 -9418 Test read # 144 ident 145182 9237- 11825 against verified region 5422- 13228 - CANDIDATE hangs 10462 -3821 Test read # 145 ident 498847 9318- 10631 against verified region 5422- 13228 - CANDIDATE hangs 11648 -3908 Test read # 146 ident 620869 9355- 10757 against verified region 5422- 13228 - CANDIDATE hangs 11518 -3938 Test read # 147 ident 134799 9366- 12930 against verified region 5422- 13228 - CANDIDATE hangs 3940 -9414 Test read # 148 ident 649242 9484- 12802 against verified region 5422- 13228 - CANDIDATE hangs 4045 -9508 Test read # 149 ident 25375 9574- 12965 against verified region 5422- 13228 - CANDIDATE hangs 4141 -9385 Test read # 150 ident 572601 9635- 12695 against verified region 5422- 13228 - CANDIDATE hangs 4201 -9629 Test read # 151 ident 185998 9638- 12390 against verified region 5422- 13228 - CANDIDATE hangs 4200 -9907 Test read # 152 ident 157121 9671- 12704 against verified region 5422- 13228 - CANDIDATE hangs 4233 -9622 Test read # 153 ident 642503 9954- 12917 against verified region 5422- 13228 - CANDIDATE hangs 4515 -9428 Test read # 154 ident 208410 9955- 12901 against verified region 5422- 13228 - CANDIDATE hangs 4511 -9443 Test read # 155 ident 193054 9959- 12881 against verified region 5422- 13228 - CANDIDATE hangs 4530 -9479 Test read # 156 ident 123415 9981- 12881 against verified region 5422- 13228 - CANDIDATE hangs 4543 -9461 Test read # 157 ident 587491 10015- 12873 against verified region 5422- 13228 - CANDIDATE hangs 4570 -9450 Test read # 158 ident 507182 10050- 11570 against verified region 5422- 13228 - CANDIDATE hangs 4606 -10730 Test read # 159 ident 208823 10063- 12942 against verified region 5422- 13228 - CANDIDATE hangs 4621 -9405 Test read # 160 ident 520148 10107- 11472 against verified region 5422- 13228 - CANDIDATE hangs 4670 -10835 Test read # 161 ident 302845 10116- 12665 against verified region 5422- 13228 - CANDIDATE hangs 4679 -9669 Test read # 162 ident 642504 10179- 12927 against verified region 5422- 13228 - CANDIDATE hangs 4729 -9409 Test read # 163 ident 669907 10276- 12923 against verified region 5422- 13228 - CANDIDATE hangs 4825 -9406 Test read # 164 ident 140100 10465- 12931 against verified region 5422- 13228 - CANDIDATE hangs 5012 -9413 Test read # 165 ident 99379 10627- 12815 against verified region 5422- 13228 - CANDIDATE hangs 5176 -9521 Test read # 166 ident 668569 10641- 11923 against verified region 5422- 13228 - CANDIDATE hangs 5183 -10386 Test read # 167 ident 294924 11014- 12619 against verified region 5422- 13228 - CANDIDATE hangs 5553 -9699 Test read # 168 ident 507368 11044- 12861 against verified region 5422- 13228 - CANDIDATE hangs 5589 -9475 Test read # 169 ident 436136 11169- 12793 against verified region 5422- 13228 - CANDIDATE hangs 5706 -9540 Test read # 170 ident 323052 11183- 12941 against verified region 5422- 13228 - CANDIDATE hangs 5720 -9407 Test read # 172 ident 675543 11735- 12939 against verified region 5422- 13228 - CANDIDATE hangs 6258 -9408 Failed to find appropriate intersecting read. createUnitigs()-- read 28603 place 0 edgeTo tig 306 reads # 33 689106- 675543 verified 5422- 13228 position 5422- 22332 covered 0- 7654 EXPECTED_3' NO_OVERLAPS Scan reads from #1 to #146 for high coordinate in verified region 5302-13005 Test read # 1 ident 500223 165- 7318 against verified region 5302- 13005 - CANDIDATE hangs 14872 5060 - SAVED Test read # 3 ident 627546 227- 10949 against verified region 5302- 13005 - CANDIDATE hangs 11329 4993 - SAVED Test read # 4 ident 716594 301- 8023 against verified region 5302- 13005 - CANDIDATE hangs 14251 4901 Test read # 5 ident 521555 450- 7233 against verified region 5302- 13005 - CANDIDATE hangs 14958 4800 Test read # 6 ident 521553 477- 6861 against verified region 5302- 13005 - CANDIDATE hangs 15330 4761 Test read # 7 ident 521554 518- 7015 against verified region 5302- 13005 - CANDIDATE hangs 15171 4718 Test read # 10 ident 425938 672- 7356 against verified region 5302- 13005 - CANDIDATE hangs 14827 4551 Test read # 11 ident 434283 724- 6620 against verified region 5302- 13005 - CANDIDATE hangs 15550 4498 Test read # 14 ident 137688 957- 7424 against verified region 5302- 13005 - CANDIDATE hangs 14760 4269 Test read # 16 ident 372210 1288- 7297 against verified region 5302- 13005 - CANDIDATE hangs 14889 3943 Test read # 18 ident 689097 1580- 9251 against verified region 5302- 13005 - CANDIDATE hangs 13018 3687 Test read # 20 ident 433859 2154- 9256 against verified region 5302- 13005 - CANDIDATE hangs 13030 3075 Test read # 22 ident 288011 2179- 8700 against verified region 5302- 13005 - CANDIDATE hangs 13527 3071 Test read # 23 ident 433860 2180- 8516 against verified region 5302- 13005 - CANDIDATE hangs 13745 3051 Test read # 24 ident 283770 2376- 6665 against verified region 5302- 13005 - CANDIDATE hangs 15513 2885 Test read # 25 ident 81343 2381- 8454 against verified region 5302- 13005 - CANDIDATE hangs 13758 2876 Test read # 26 ident 488875 2384- 7085 against verified region 5302- 13005 - CANDIDATE hangs 15098 2878 Test read # 27 ident 81345 2400- 8450 against verified region 5302- 13005 - CANDIDATE hangs 13763 2848 Test read # 28 ident 81344 2401- 8269 against verified region 5302- 13005 - CANDIDATE hangs 13936 2860 Test read # 29 ident 81346 2404- 8454 against verified region 5302- 13005 - CANDIDATE hangs 13754 2850 Test read # 30 ident 81342 2558- 8448 against verified region 5302- 13005 - CANDIDATE hangs 13761 2694 Test read # 31 ident 57284 2582- 7236 against verified region 5302- 13005 - CANDIDATE hangs 14956 2691 Test read # 32 ident 231344 2591- 6483 against verified region 5302- 13005 - CANDIDATE hangs 15689 2677 Test read # 33 ident 689106 2685- 6285 against verified region 5302- 13005 - CANDIDATE hangs -2561 -15890 Test read # 34 ident 695912 2703- 6709 against verified region 5302- 13005 - CANDIDATE hangs 15481 2606 Test read # 36 ident 648550 2846- 7713 against verified region 5302- 13005 - CANDIDATE hangs 14489 2433 Test read # 37 ident 437764 2891- 8141 against verified region 5302- 13005 - CANDIDATE hangs 14066 2388 Test read # 39 ident 710147 2907- 6286 against verified region 5302- 13005 - CANDIDATE hangs 15876 2349 Test read # 40 ident 296965 2925- 10525 against verified region 5302- 13005 - CANDIDATE hangs 11741 2350 Test read # 41 ident 296966 2939- 11311 against verified region 5302- 13005 - CANDIDATE hangs 10976 2337 - SAVED Test read # 43 ident 612668 3151- 10025 against verified region 5302- 13005 - CANDIDATE hangs 12209 2129 Test read # 44 ident 612666 3168- 10051 against verified region 5302- 13005 - CANDIDATE hangs 12188 2105 Test read # 45 ident 612670 3173- 10030 against verified region 5302- 13005 - CANDIDATE hangs 12191 2103 Test read # 46 ident 612664 3200- 10056 against verified region 5302- 13005 - CANDIDATE hangs 12187 2074 Test read # 49 ident 680664 3253- 8726 against verified region 5302- 13005 - CANDIDATE hangs 13484 2019 Test read # 51 ident 379758 3326- 6972 against verified region 5302- 13005 - CANDIDATE hangs 15212 1982 Test read # 53 ident 100147 3347- 12494 against verified region 5302- 13005 - CANDIDATE hangs 9783 1936 - SAVED Test read # 54 ident 119035 3362- 10186 against verified region 5302- 13005 - CANDIDATE hangs 12085 1919 Test read # 55 ident 100148 3385- 11888 against verified region 5302- 13005 - CANDIDATE hangs 10397 1899 Test read # 56 ident 214382 3392- 9000 against verified region 5302- 13005 - CANDIDATE hangs 13239 1888 Test read # 57 ident 437762 3488- 8488 against verified region 5302- 13005 - CANDIDATE hangs 13727 1795 Test read # 58 ident 346316 3971- 10247 against verified region 5302- 13005 - CANDIDATE hangs 12010 1318 Test read # 59 ident 709328 3993- 10019 against verified region 5302- 13005 - CANDIDATE hangs 12233 1304 Test read # 60 ident 464269 4047- 8743 against verified region 5302- 13005 - CANDIDATE hangs 13507 1256 Test read # 61 ident 619534 4176- 11285 against verified region 5302- 13005 - CANDIDATE hangs 11003 1119 Test read # 62 ident 348461 4177- 9224 against verified region 5302- 13005 - CANDIDATE hangs 13025 1126 Test read # 63 ident 469389 4227- 8768 against verified region 5302- 13005 - CANDIDATE hangs 13494 1067 Test read # 64 ident 556814 4232- 7235 against verified region 5302- 13005 - CANDIDATE hangs 14965 1078 Test read # 65 ident 538798 4234- 6963 against verified region 5302- 13005 - CANDIDATE hangs 15212 1063 Test read # 66 ident 335297 4251- 10320 against verified region 5302- 13005 - CANDIDATE hangs 11937 1053 Test read # 67 ident 335296 4287- 10243 against verified region 5302- 13005 - CANDIDATE hangs 12008 1015 Test read # 68 ident 234006 4297- 11665 against verified region 5302- 13005 - CANDIDATE hangs 10620 999 Test read # 69 ident 166045 4313- 10181 against verified region 5302- 13005 - CANDIDATE hangs 12077 987 Test read # 70 ident 139429 4345- 6188 against verified region 5302- 13005 - CANDIDATE hangs 15982 959 Test read # 71 ident 173860 4362- 6251 against verified region 5302- 13005 - CANDIDATE hangs 15922 950 Test read # 72 ident 166046 4422- 10157 against verified region 5302- 13005 - CANDIDATE hangs 12099 873 Test read # 73 ident 631753 4443- 9813 against verified region 5302- 13005 - CANDIDATE hangs 12441 857 Test read # 75 ident 196502 4550- 6353 against verified region 5302- 13005 - CANDIDATE hangs 15823 761 Test read # 77 ident 488350 4596- 10391 against verified region 5302- 13005 - CANDIDATE hangs 11895 705 Test read # 80 ident 488345 4606- 11120 against verified region 5302- 13005 - CANDIDATE hangs 11166 701 Test read # 81 ident 160564 4620- 11255 against verified region 5302- 13005 - CANDIDATE hangs 11026 687 Test read # 82 ident 488347 4621- 11133 against verified region 5302- 13005 - CANDIDATE hangs 11174 679 Test read # 83 ident 488346 4628- 10592 against verified region 5302- 13005 - CANDIDATE hangs 11685 675 Test read # 84 ident 372214 4632- 7299 against verified region 5302- 13005 - CANDIDATE hangs 14893 664 Test read # 85 ident 233527 4634- 7905 against verified region 5302- 13005 - CANDIDATE hangs 14296 682 Test read # 86 ident 488348 4644- 11075 against verified region 5302- 13005 - CANDIDATE hangs 11233 658 Test read # 87 ident 705440 4646- 11135 against verified region 5302- 13005 - CANDIDATE hangs 11151 658 Test read # 88 ident 366481 4685- 11318 against verified region 5302- 13005 - CANDIDATE hangs 10962 623 Test read # 89 ident 366482 4750- 11235 against verified region 5302- 13005 - CANDIDATE hangs 11025 562 Test read # 90 ident 366483 4753- 11320 against verified region 5302- 13005 - CANDIDATE hangs 10952 553 Test read # 91 ident 122732 4787- 8655 against verified region 5302- 13005 - CANDIDATE hangs 13585 520 Test read # 92 ident 402860 4792- 11977 against verified region 5302- 13005 - CANDIDATE hangs 10350 484 Test read # 93 ident 495573 4806- 13005 against verified region 5302- 13005 Test read # 94 ident 242453 4820- 6001 against verified region 5302- 13005 - CANDIDATE hangs 16170 512 Test read # 95 ident 420499 4845- 8222 against verified region 5302- 13005 - CANDIDATE hangs 13988 456 Test read # 96 ident 142480 4849- 12928 against verified region 5302- 13005 - CANDIDATE hangs 9398 468 - SAVED Test read # 97 ident 61901 4968- 6116 against verified region 5302- 13005 - CANDIDATE hangs 16058 346 Test read # 98 ident 706713 5099- 10530 against verified region 5302- 13005 - CANDIDATE hangs 11732 224 Test read # 99 ident 60557 5167- 11488 against verified region 5302- 13005 - CANDIDATE hangs 10815 148 Test read # 100 ident 60556 5170- 11501 against verified region 5302- 13005 - CANDIDATE hangs 10787 150 Test read # 101 ident 110628 5259- 12921 against verified region 5302- 13005 - CANDIDATE hangs 9408 69 Test read # 102 ident 132923 5284- 7572 against verified region 5302- 13005 - CANDIDATE hangs 14621 38 Test read # 103 ident 648551 5327- 7882 against verified region 5302- 13005 - CANDIDATE hangs 14324 -7 Test read # 104 ident 244680 5332- 7528 against verified region 5302- 13005 - CANDIDATE hangs 14667 -14 Test read # 105 ident 60558 5433- 8027 against verified region 5302- 13005 - CANDIDATE hangs 14190 -113 Test read # 106 ident 534820 5472- 7216 against verified region 5302- 13005 - CANDIDATE hangs 14968 -145 Test read # 107 ident 612671 5561- 9924 against verified region 5302- 13005 - CANDIDATE hangs 12306 -213 Test read # 108 ident 480760 5608- 8846 against verified region 5302- 13005 - CANDIDATE hangs 13401 -286 Test read # 109 ident 706712 5897- 10301 against verified region 5302- 13005 - CANDIDATE hangs 11971 -564 Test read # 110 ident 16127 5899- 8471 against verified region 5302- 13005 - CANDIDATE hangs 13752 -564 Test read # 111 ident 44898 5924- 7072 against verified region 5302- 13005 - CANDIDATE hangs 15114 -591 Test read # 112 ident 44894 5989- 12972 against verified region 5302- 13005 - CANDIDATE hangs 9390 -656 Test read # 113 ident 600677 6063- 8596 against verified region 5302- 13005 - CANDIDATE hangs 13632 -722 Test read # 114 ident 218623 6069- 11159 against verified region 5302- 13005 - CANDIDATE hangs 11126 -733 Test read # 115 ident 689098 6085- 8360 against verified region 5302- 13005 - CANDIDATE hangs 13868 -754 Test read # 116 ident 96994 6322- 7840 against verified region 5302- 13005 - CANDIDATE hangs 14365 -981 Test read # 117 ident 429918 6486- 11016 against verified region 5302- 13005 - CANDIDATE hangs 11278 -1143 Test read # 118 ident 218624 6526- 11900 against verified region 5302- 13005 - CANDIDATE hangs 10383 -1173 Test read # 119 ident 234007 7036- 11664 against verified region 5302- 13005 - CANDIDATE hangs 10614 -1667 Test read # 120 ident 419890 7209- 10255 against verified region 5302- 13005 - CANDIDATE hangs 12007 -1843 Test read # 121 ident 497665 7326- 11541 against verified region 5302- 13005 - CANDIDATE hangs 10736 -1950 Test read # 122 ident 372550 7470- 13228 against verified region 5302- 13005 Test read # 123 ident 281101 7472- 12925 against verified region 5302- 13005 - CANDIDATE hangs 2089 -9407 Test read # 124 ident 352253 7481- 10896 against verified region 5302- 13005 - CANDIDATE hangs 11402 -2126 Test read # 125 ident 19778 7484- 12954 against verified region 5302- 13005 - CANDIDATE hangs 2122 -9406 Test read # 126 ident 426924 7526- 9405 against verified region 5302- 13005 - CANDIDATE hangs 12856 -2169 Test read # 127 ident 615024 7590- 10052 against verified region 5302- 13005 - CANDIDATE hangs 12196 -2217 Test read # 128 ident 147262 7753- 9744 against verified region 5302- 13005 - CANDIDATE hangs 12507 -2380 Test read # 129 ident 16776 8271- 9452 against verified region 5302- 13005 - CANDIDATE hangs 2876 -12809 Test read # 130 ident 19779 8328- 12941 against verified region 5302- 13005 - CANDIDATE hangs 2927 -9406 Test read # 131 ident 24210 8415- 12934 against verified region 5302- 13005 - CANDIDATE hangs 3015 -9427 Test read # 132 ident 149878 8447- 12943 against verified region 5302- 13005 - CANDIDATE hangs 3045 -9407 Test read # 133 ident 193055 8478- 12875 against verified region 5302- 13005 - CANDIDATE hangs 3105 -9479 Test read # 134 ident 366480 8497- 11026 against verified region 5302- 13005 - CANDIDATE hangs 11247 -3102 Test read # 135 ident 191958 8522- 12662 against verified region 5302- 13005 - CANDIDATE hangs 3128 -9662 Test read # 136 ident 554168 8565- 12939 against verified region 5302- 13005 - CANDIDATE hangs 3173 -9408 Test read # 137 ident 208315 8664- 10054 against verified region 5302- 13005 - CANDIDATE hangs 12200 -3257 Test read # 138 ident 409936 8692- 12933 against verified region 5302- 13005 - CANDIDATE hangs 3295 -9437 Test read # 139 ident 81470 8845- 12949 against verified region 5302- 13005 - CANDIDATE hangs 3434 -9399 Test read # 140 ident 254683 8848- 12927 against verified region 5302- 13005 - CANDIDATE hangs 3426 -9407 Test read # 141 ident 158305 8922- 12912 against verified region 5302- 13005 - CANDIDATE hangs 3508 -9437 Test read # 142 ident 96267 9212- 11789 against verified region 5302- 13005 - CANDIDATE hangs 10489 -3795 Test read # 143 ident 537144 9217- 12917 against verified region 5302- 13005 - CANDIDATE hangs 3785 -9418 Test read # 144 ident 145182 9237- 11825 against verified region 5302- 13005 - CANDIDATE hangs 10462 -3821 Test read # 145 ident 498847 9318- 10631 against verified region 5302- 13005 - CANDIDATE hangs 11648 -3908 Test read # 146 ident 620869 9355- 10757 against verified region 5302- 13005 - CANDIDATE hangs 11518 -3938 Found appropriate intersecting read. createUnitigs()-- read 28603 place 1 edgeTo tig 306 reads # 1 500223- 620869 verified 13005- 5302 position 22241- 5302 covered 9296- 16824 BREAK at pos 12928 read 142480 isLow 0 sim 1.0000 createUnitigs()-- read 28603 place 2 edgeTo tig 471 reads # 0 28604- 237463 verified 1697- 18554 position 1697- 18554 covered 8- 16824 SELF createUnitigs()-- read 28603 place 3 edgeTo tig 471 reads # 1 365739- 538403 verified 18843- 2284 position 18956- 2091 covered 120- 16683 SELF EXPECTED_3' Scan reads from #304 to #305 for low coordinate in verified region 29738-33401 Test read # 304 ident 96264 29738- 33387 against verified region 29738- 33401 Test read # 305 ident 101467 29931- 33401 against verified region 29738- 33401 - CANDIDATE hangs 3977 -9398 Failed to find appropriate intersecting read. createUnitigs()-- read 28603 place 4 edgeTo tig 113065 reads # 304 96264- 101467 verified 29738- 33401 position 25955- 42792 covered 3782- 7426 EXPECTED_3' NO_OVERLAPS Scan reads from #117 to #303 for high coordinate in verified region 25908-33446 Test read # 117 ident 642252 14425- 27879 against verified region 25908- 33446 - CANDIDATE hangs 14881 11368 - SAVED Test read # 123 ident 710145 14656- 27035 against verified region 25908- 33446 - CANDIDATE hangs 15722 11143 Test read # 126 ident 710146 14764- 27029 against verified region 25908- 33446 - CANDIDATE hangs 15722 11042 Test read # 167 ident 163167 16188- 26807 against verified region 25908- 33446 - CANDIDATE hangs 15963 9656 Test read # 174 ident 645883 16489- 28838 against verified region 25908- 33446 - CANDIDATE hangs 13925 9364 - SAVED Test read # 179 ident 194006 16667- 26587 against verified region 25908- 33446 - CANDIDATE hangs 16174 9184 Test read # 189 ident 159298 17240- 29635 against verified region 25908- 33446 - CANDIDATE hangs 13133 8611 - SAVED Test read # 194 ident 83280 17461- 27161 against verified region 25908- 33446 - CANDIDATE hangs 15601 8408 Test read # 195 ident 682705 17469- 28232 against verified region 25908- 33446 - CANDIDATE hangs 14528 8401 Test read # 200 ident 131718 17607- 27437 against verified region 25908- 33446 - CANDIDATE hangs 15322 8251 Test read # 201 ident 131719 17624- 26647 against verified region 25908- 33446 - CANDIDATE hangs 16112 8238 Test read # 202 ident 131717 17632- 27404 against verified region 25908- 33446 - CANDIDATE hangs 15357 8238 Test read # 204 ident 698702 17669- 27373 against verified region 25908- 33446 - CANDIDATE hangs 15388 8195 Test read # 209 ident 348416 17911- 31526 against verified region 25908- 33446 - CANDIDATE hangs 11240 7949 - SAVED Test read # 213 ident 359909 18204- 30685 against verified region 25908- 33446 - CANDIDATE hangs 12065 7657 Test read # 226 ident 591921 18734- 29357 against verified region 25908- 33446 - CANDIDATE hangs 13421 7150 Test read # 230 ident 156595 18835- 33390 against verified region 25908- 33446 - CANDIDATE hangs 9397 7054 - SAVED Test read # 233 ident 116514 18918- 26440 against verified region 25908- 33446 - CANDIDATE hangs 16317 6976 Test read # 235 ident 538797 19176- 27750 against verified region 25908- 33446 - CANDIDATE hangs 15013 6721 Test read # 237 ident 365817 19221- 26593 against verified region 25908- 33446 - CANDIDATE hangs 16170 6678 Test read # 239 ident 241713 19343- 29520 against verified region 25908- 33446 - CANDIDATE hangs 13247 6556 Test read # 240 ident 144097 19358- 31226 against verified region 25908- 33446 - CANDIDATE hangs 11537 6536 Test read # 241 ident 693336 19685- 27664 against verified region 25908- 33446 - CANDIDATE hangs 15084 6206 Test read # 244 ident 627545 19885- 31450 against verified region 25908- 33446 - CANDIDATE hangs 11315 6026 Test read # 245 ident 627544 19896- 30823 against verified region 25908- 33446 - CANDIDATE hangs 11946 6010 Test read # 248 ident 152909 20369- 29875 against verified region 25908- 33446 - CANDIDATE hangs 12892 5548 Test read # 249 ident 440246 20534- 29034 against verified region 25908- 33446 - CANDIDATE hangs 13730 5386 Test read # 250 ident 440247 20543- 27046 against verified region 25908- 33446 - CANDIDATE hangs 15710 5377 Test read # 251 ident 220274 20617- 27787 against verified region 25908- 33446 - CANDIDATE hangs 14964 5301 Test read # 252 ident 639646 20848- 27693 against verified region 25908- 33446 - CANDIDATE hangs 15071 5080 Test read # 253 ident 531481 21221- 29945 against verified region 25908- 33446 - CANDIDATE hangs 12822 4713 Test read # 254 ident 152910 21251- 29872 against verified region 25908- 33446 - CANDIDATE hangs 12892 4676 Test read # 255 ident 100939 21335- 33390 against verified region 25908- 33446 - CANDIDATE hangs 9394 4588 Test read # 256 ident 107887 21353- 33395 against verified region 25908- 33446 - CANDIDATE hangs 9397 4570 - SAVED Test read # 257 ident 511949 21387- 32636 against verified region 25908- 33446 - CANDIDATE hangs 10139 4540 Test read # 258 ident 425937 21396- 30031 against verified region 25908- 33446 - CANDIDATE hangs 12745 4529 Test read # 259 ident 159297 21605- 29631 against verified region 25908- 33446 - CANDIDATE hangs 13133 4323 Test read # 260 ident 562444 21904- 30682 against verified region 25908- 33446 - CANDIDATE hangs 12079 4019 Test read # 261 ident 372209 21962- 27869 against verified region 25908- 33446 - CANDIDATE hangs 14890 3968 Test read # 262 ident 372211 21963- 27869 against verified region 25908- 33446 - CANDIDATE hangs 14893 3960 Test read # 263 ident 372212 21970- 27865 against verified region 25908- 33446 - CANDIDATE hangs 14894 3949 Test read # 264 ident 372213 21975- 27872 against verified region 25908- 33446 - CANDIDATE hangs 14890 3950 Test read # 265 ident 177410 22255- 30833 against verified region 25908- 33446 - CANDIDATE hangs 11922 3668 Test read # 266 ident 212352 22300- 30349 against verified region 25908- 33446 - CANDIDATE hangs 12404 3624 Test read # 267 ident 163170 22308- 29408 against verified region 25908- 33446 - CANDIDATE hangs 13354 3621 Test read # 268 ident 577630 22318- 29843 against verified region 25908- 33446 - CANDIDATE hangs 12924 3609 Test read # 269 ident 577628 22320- 29835 against verified region 25908- 33446 - CANDIDATE hangs 12928 3604 Test read # 270 ident 577629 22323- 29838 against verified region 25908- 33446 - CANDIDATE hangs 12924 3602 Test read # 271 ident 577632 22326- 28782 against verified region 25908- 33446 - CANDIDATE hangs 13979 3595 Test read # 272 ident 577627 22332- 29850 against verified region 25908- 33446 - CANDIDATE hangs 12913 3594 Test read # 273 ident 577631 22349- 29826 against verified region 25908- 33446 - CANDIDATE hangs 12937 3578 Test read # 274 ident 358527 22395- 30927 against verified region 25908- 33446 - CANDIDATE hangs 11838 3534 Test read # 275 ident 140953 22641- 32434 against verified region 25908- 33446 - CANDIDATE hangs 10335 3286 Test read # 276 ident 464270 22672- 28613 against verified region 25908- 33446 - CANDIDATE hangs 14147 3259 Test read # 277 ident 214383 22757- 29564 against verified region 25908- 33446 - CANDIDATE hangs 13203 3174 Test read # 278 ident 288010 22798- 29254 against verified region 25908- 33446 - CANDIDATE hangs 13506 3127 Test read # 279 ident 428196 22809- 29315 against verified region 25908- 33446 - CANDIDATE hangs 13453 3122 Test read # 280 ident 239393 22898- 33391 against verified region 25908- 33446 - CANDIDATE hangs 9398 3027 Test read # 281 ident 81471 23513- 33402 against verified region 25908- 33446 - CANDIDATE hangs 9394 2421 - SAVED Test read # 282 ident 437763 23551- 29035 against verified region 25908- 33446 - CANDIDATE hangs 13727 2373 Test read # 283 ident 296967 23584- 31787 against verified region 25908- 33446 - CANDIDATE hangs 10980 2343 Test read # 284 ident 296968 23584- 29121 against verified region 25908- 33446 - CANDIDATE hangs 13641 2343 Test read # 285 ident 196076 23736- 30516 against verified region 25908- 33446 - CANDIDATE hangs 12250 2195 Test read # 286 ident 668413 23737- 33358 against verified region 25908- 33446 - CANDIDATE hangs 9409 2188 Test read # 287 ident 196075 23739- 33446 against verified region 25908- 33446 Test read # 288 ident 612667 23792- 30568 against verified region 25908- 33446 - CANDIDATE hangs 12187 2135 Test read # 289 ident 612665 23796- 30565 against verified region 25908- 33446 - CANDIDATE hangs 12187 2120 Test read # 290 ident 612669 23812- 30566 against verified region 25908- 33446 - CANDIDATE hangs 12186 2104 Test read # 291 ident 418554 24000- 32709 against verified region 25908- 33446 - CANDIDATE hangs 10053 1930 Test read # 292 ident 490949 24620- 33393 against verified region 25908- 33446 - CANDIDATE hangs 9394 1308 Test read # 293 ident 713368 24703- 33170 against verified region 25908- 33446 - CANDIDATE hangs 9606 1227 Test read # 294 ident 649241 24742- 33263 against verified region 25908- 33446 - CANDIDATE hangs 9513 1187 Test read # 295 ident 166044 24943- 30671 against verified region 25908- 33446 - CANDIDATE hangs 12092 987 Test read # 296 ident 631754 25078- 32253 against verified region 25908- 33446 - CANDIDATE hangs 10514 853 Test read # 297 ident 488349 25230- 31553 against verified region 25908- 33446 - CANDIDATE hangs 11239 699 Test read # 298 ident 122733 25293- 32798 against verified region 25908- 33446 - CANDIDATE hangs 9974 638 Test read # 299 ident 140829 25618- 33394 against verified region 25908- 33446 - CANDIDATE hangs 9398 314 Test read # 300 ident 204802 25692- 33412 against verified region 25908- 33446 - CANDIDATE hangs 9384 239 - SAVED Test read # 301 ident 204801 25705- 33406 against verified region 25908- 33446 - CANDIDATE hangs 9384 233 Test read # 302 ident 204803 25717- 33396 against verified region 25908- 33446 - CANDIDATE hangs 9396 212 Test read # 303 ident 110629 25847- 33382 against verified region 25908- 33446 - CANDIDATE hangs 9393 87 Found appropriate intersecting read. createUnitigs()-- read 28603 place 5 edgeTo tig 113065 reads # 117 642252- 110629 verified 33446- 25908 position 42767- 25908 covered 9384- 16824 BREAK at pos 33412 read 204802 isLow 0 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 474 len 21460 first read 257089 with 1 placements - last read 21522 with 1 placements createUnitigs()-- read 257089 place 0 edgeTo tig 474 reads # 1 43509- 257090 verified 37- 5226 position 9- 5226 covered 0- 5220 SELF createUnitigs()-- read 21522 place 0 edgeTo tig 474 reads # 30 421331- 497707 verified 21440- 16340 position 21450- 16340 covered 30- 5110 SELF EXPECTED_5' createUnitigs()-- tig 478 len 44849 first read 496546 with 2 placements - last read 225679 with 1 placements createUnitigs()-- read 496546 place 0 edgeTo tig 478 reads # 1 706500- 681379 verified 7- 9536 position 7- 9536 covered 4- 9508 SELF EXPECTED_5' Scan reads from #21 to #29 for high coordinate in verified region 6909-9190 Test read # 21 ident 622972 6902- 8644 against verified region 6909- 9190 - CANDIDATE hangs -2 -7811 - SAVED Test read # 22 ident 280912 6907- 8962 against verified region 6909- 9190 - CANDIDATE hangs -3 -7488 - SAVED Test read # 23 ident 505943 7003- 8062 against verified region 6909- 9190 - CANDIDATE hangs 98 -8375 Test read # 24 ident 426930 7016- 8275 against verified region 6909- 9190 - CANDIDATE hangs 105 -8161 Test read # 25 ident 75591 7074- 8142 against verified region 6909- 9190 - CANDIDATE hangs 167 -8296 Test read # 26 ident 331271 7076- 8102 against verified region 6909- 9190 - CANDIDATE hangs 168 -8331 Test read # 28 ident 215562 7202- 8257 against verified region 6909- 9190 - CANDIDATE hangs 291 -8182 Test read # 29 ident 414832 7710- 9190 against verified region 6909- 9190 Found appropriate intersecting read. createUnitigs()-- read 496546 place 1 edgeTo tig 3927 reads # 21 622972- 414832 verified 6909- 9190 position 6909- 16442 covered 0- 2246 BREAK at pos 8962 read 280912 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 225679 place 0 edgeTo tig 478 reads # 51 716154- 397268 verified 34250- 38268 position 34250- 44823 covered 0- 4038 SELF EXPECTED_3' createUnitigs()-- tig 480 len 38338 first read 168113 with 1 placements - last read 62825 with 1 placements createUnitigs()-- read 168113 place 0 edgeTo tig 480 reads # 1 563648- 563649 verified 142- 1062 position 0- 1062 covered 141- 1046 SELF EXPECTED_5' createUnitigs()-- read 62825 place 0 edgeTo tig 480 reads # 32 496205- 62821 verified 31937- 38316 position 31937- 38316 covered 0- 6364 SELF createUnitigs()-- tig 481 len 27481 first read 67665 with 1 placements - last read 35031 with 1 placements createUnitigs()-- read 67665 place 0 edgeTo tig 481 reads # 1 67670- 605067 verified 6343- 2 position 6343- 1 covered 0- 6340 SELF createUnitigs()-- read 35031 place 0 edgeTo tig 481 reads # 28 266653- 35026 verified 27478- 20972 position 27488- 20972 covered 0- 6488 SELF createUnitigs()-- tig 482 len 35997 first read 508758 with 1 placements - last read 543706 with 1 placements createUnitigs()-- read 508758 place 0 edgeTo tig 482 reads # 1 605398- 605398 verified 3654- 362 position 3654- 0 covered 0- 3200 SELF EXPECTED_3' createUnitigs()-- read 543706 place 0 edgeTo tig 482 reads # 47 68649- 543705 verified 31378- 35993 position 31378- 35995 covered 0- 4598 SELF createUnitigs()-- tig 487 len 19949 first read 487199 with 4 placements - last read 85767 with 3 placements createUnitigs()-- read 487199 place 0 edgeTo tig 487 reads # 1 487200- 106631 verified 337- 9372 position 32- 9372 covered 301- 9334 SELF EXPECTED_5' Scan reads from #5 to #5 for low coordinate in verified region 1535-2440 Test read # 5 ident 287948 1535- 11006 against verified region 1535- 2440 Failed to find appropriate intersecting read. createUnitigs()-- read 487199 place 1 edgeTo tig 113196 reads # 5 287948- 287948 verified 2440- 1535 position 2440- -7097 covered 0- 702 NO_OVERLAPS Scan reads from #24 to #24 for low coordinate in verified region 3863-4715 Test read # 24 ident 263270 3863- 9629 against verified region 3863- 4715 Failed to find appropriate intersecting read. createUnitigs()-- read 487199 place 2 edgeTo tig 113196 reads # 24 263270- 263270 verified 4715- 3863 position 4715- -4771 covered 0- 700 NO_OVERLAPS Scan reads from #77 to #162 for low coordinate in verified region 5885-7041 Test read # 77 ident 345882 5885- 7600 against verified region 5885- 7041 Test read # 78 ident 427574 5937- 8695 against verified region 5885- 7041 - CANDIDATE hangs -1970 -8642 - SAVED Test read # 149 ident 637759 6611- 9161 against verified region 5885- 7041 - CANDIDATE hangs -1786 -8642 Test read # 162 ident 662489 6687- 9002 against verified region 5885- 7041 - CANDIDATE hangs -1553 -8635 Found appropriate intersecting read. createUnitigs()-- read 487199 place 3 edgeTo tig 113196 reads # 77 345882- 662489 verified 7041- 5885 position 7041- -2359 covered 0- 699 BREAK at pos 5937 read 427574 isLow 1 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 85767 place 0 edgeTo tig 487 reads # 12 150931- 85762 verified 19943- 12384 position 19943- 12384 covered 0- 7537 SELF Scan reads from #11 to #13 for low coordinate in verified region 5412-6802 Test read # 11 ident 532536 5412- 6723 against verified region 5412- 6802 Test read # 12 ident 322357 5476- 7490 against verified region 5412- 6802 - CANDIDATE hangs -686 -6220 - SAVED Test read # 13 ident 322356 5557- 7117 against verified region 5412- 6802 - CANDIDATE hangs -321 -6304 Found appropriate intersecting read. createUnitigs()-- read 85767 place 1 edgeTo tig 3824 reads # 11 532536- 322356 verified 6802- 5412 position 6802- -745 covered 0- 1381 BREAK at pos 5476 read 322357 isLow 1 sim 1.0000 Scan reads from #4 to #4 for high coordinate in verified region 6105-7914 Test read # 4 ident 525552 4636- 7914 against verified region 6105- 7914 Failed to find appropriate intersecting read. createUnitigs()-- read 85767 place 2 edgeTo tig 9530 reads # 4 525552- 525552 verified 6105- 7914 position 6105- 13665 covered 0- 1786 NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 488 len 28769 first read 226009 with 1 placements - last read 86400 with 1 placements createUnitigs()-- read 226009 place 0 edgeTo tig 488 reads # 1 523429- 295532 verified 2447- 9416 position 6- 9416 covered 2468- 9378 SELF EXPECTED_5' createUnitigs()-- read 86400 place 0 edgeTo tig 488 reads # 42 282203- 33867 verified 26113- 27018 position 26113- 28764 covered 0- 890 SELF EXPECTED_3' createUnitigs()-- tig 494 len 38082 first read 112911 with 1 placements - last read 459136 with 1 placements createUnitigs()-- read 112911 place 0 edgeTo tig 494 reads # 1 112910- 408498 verified 4- 5915 position 4- 5915 covered 0- 5869 SELF createUnitigs()-- read 459136 place 0 edgeTo tig 494 reads # 33 337467- 220134 verified 31523- 36020 position 31523- 38082 covered 0- 4433 SELF EXPECTED_3' createUnitigs()-- tig 497 len 12638 first read 123718 with 3 placements - last read 499822 with 3 placements createUnitigs()-- read 123718 place 0 edgeTo tig 497 reads # 1 123716- 673397 verified 7620- 2 position 7620- 2 covered 0- 7576 SELF Scan reads from #24 to #25 for low coordinate in verified region 20950-21657 Test read # 24 ident 283005 14487- 21654 against verified region 20950- 21657 Test read # 25 ident 283006 14751- 21657 against verified region 20950- 21657 Failed to find appropriate intersecting read. createUnitigs()-- read 123718 place 1 edgeTo tig 2328 reads # 24 283005- 283006 verified 20950- 21657 position 20950- 28558 covered 0- 674 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #14 for low coordinate in verified region 7905-10537 Test read # 0 ident 459197 0- 10537 against verified region 7905- 10537 Test read # 13 ident 415628 6999- 10444 against verified region 7905- 10537 Test read # 14 ident 415629 7023- 10536 against verified region 7905- 10537 Failed to find appropriate intersecting read. createUnitigs()-- read 123718 place 2 edgeTo tig 582877 reads # 0 459197- 415629 verified 7905- 10537 position 7905- 15583 covered 0- 2539 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 499822 place 0 edgeTo tig 497 reads # 0 123718- 24794 verified 4735- 12419 position 4735- 12621 covered 0- 7666 SELF EXPECTED_3' Scan reads from #0 to #5 for high coordinate in verified region 5287-7441 Test read # 0 ident 44155 0- 7386 against verified region 5287- 7441 - CANDIDATE hangs 5859 5314 - SAVED Test read # 1 ident 44156 8- 7373 against verified region 5287- 7441 - CANDIDATE hangs 5869 5305 Test read # 2 ident 44154 23- 7377 against verified region 5287- 7441 - CANDIDATE hangs 5861 5282 Test read # 3 ident 44153 64- 7441 against verified region 5287- 7441 Test read # 5 ident 44152 1729- 7209 against verified region 5287- 7441 - CANDIDATE hangs 5859 3406 Found appropriate intersecting read. createUnitigs()-- read 499822 place 1 edgeTo tig 113215 reads # 0 44155- 44152 verified 7441- 5287 position 13218- 5287 covered 5859- 7885 BREAK at pos 7386 read 44155 isLow 0 sim 1.0000 Scan reads from #13 to #14 for high coordinate in verified region 6999-10536 Test read # 13 ident 415628 6999- 10444 against verified region 6999- 10536 - CANDIDATE hangs 413 -4089 Test read # 14 ident 415629 7023- 10536 against verified region 6999- 10536 Failed to find appropriate intersecting read. createUnitigs()-- read 499822 place 2 edgeTo tig 582877 reads # 13 415628- 415629 verified 10536- 6999 position 10857- 2910 covered 321- 3796 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 500 len 39543 first read 128151 with 1 placements - last read 365649 with 1 placements createUnitigs()-- read 128151 place 0 edgeTo tig 500 reads # 1 31928- 612946 verified 453- 3825 position 12- 3825 covered 450- 3813 SELF EXPECTED_5' createUnitigs()-- read 365649 place 0 edgeTo tig 500 reads # 27 70434- 542708 verified 29784- 38270 position 29784- 39546 covered 0- 8427 SELF EXPECTED_3' createUnitigs()-- tig 506 len 34025 first read 144205 with 1 placements - last read 458337 with 1 placements createUnitigs()-- read 144205 place 0 edgeTo tig 506 reads # 1 194761- 98016 verified 0- 2045 position 0- 2045 covered 0- 2038 SELF createUnitigs()-- read 458337 place 0 edgeTo tig 506 reads # 45 450211- 176710 verified 30157- 32471 position 30157- 34016 covered 0- 2281 SELF EXPECTED_3' createUnitigs()-- tig 514 len 13030 first read 624657 with 3 placements - last read 190346 with 3 placements Scan reads from #0 to #36 for high coordinate in verified region 3109-6426 Test read # 0 ident 521661 0- 6372 against verified region 3109- 6426 - CANDIDATE hangs 4334 3109 - SAVED Test read # 2 ident 521662 98- 6393 against verified region 3109- 6426 - CANDIDATE hangs 4321 3010 - SAVED Test read # 7 ident 546155 2111- 6425 against verified region 3109- 6426 - CANDIDATE hangs 4300 1000 - SAVED Test read # 8 ident 356541 2112- 6139 against verified region 3109- 6426 - CANDIDATE hangs 4567 984 Test read # 12 ident 71983 2117- 5233 against verified region 3109- 6426 - CANDIDATE hangs 5455 994 Test read # 18 ident 658066 2123- 5039 against verified region 3109- 6426 - CANDIDATE hangs 5644 985 Test read # 19 ident 471759 2128- 5754 against verified region 3109- 6426 - CANDIDATE hangs 4936 968 Test read # 21 ident 643396 2132- 6426 against verified region 3109- 6426 Test read # 25 ident 590646 2895- 5196 against verified region 3109- 6426 - CANDIDATE hangs 5492 232 Test read # 36 ident 385391 3135- 6408 against verified region 3109- 6426 - CANDIDATE hangs 4312 5 Found appropriate intersecting read. createUnitigs()-- read 624657 place 0 edgeTo tig 62 reads # 0 521661- 385391 verified 6426- 3109 position 10703- 3109 covered 4292- 7538 BREAK at pos 6425 read 546155 isLow 0 sim 1.0000 createUnitigs()-- read 624657 place 1 edgeTo tig 514 reads # 1 193170- 253427 verified 7594- 127 position 7594- 29 covered 0- 7414 SELF EXPECTED_3' Scan reads from #51 to #51 for low coordinate in verified region 11389-12615 Test read # 51 ident 184333 11389- 12615 against verified region 11389- 12615 Failed to find appropriate intersecting read. createUnitigs()-- read 624657 place 2 edgeTo tig 113062 reads # 51 184333- 184333 verified 11389- 12615 position 9046- 16603 covered 2343- 3550 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 190346 place 0 edgeTo tig 514 reads # 0 624657- 190347 verified 5672- 12868 position 5672- 13022 covered 0- 7157 SELF EXPECTED_3' Scan reads from #10 to #112 for high coordinate in verified region 7801-14251 Test read # 10 ident 211689 889- 11154 against verified region 7801- 14251 - CANDIDATE hangs 4070 6783 - SAVED Test read # 13 ident 295407 1484- 11946 against verified region 7801- 14251 - CANDIDATE hangs 3289 6188 - SAVED Test read # 17 ident 659233 2059- 12923 against verified region 7801- 14251 - CANDIDATE hangs 2348 5643 - SAVED Test read # 18 ident 60547 2155- 13187 against verified region 7801- 14251 - CANDIDATE hangs 2062 5552 - SAVED Test read # 19 ident 60544 2173- 13729 against verified region 7801- 14251 - CANDIDATE hangs 1535 5539 - SAVED Test read # 20 ident 60546 2184- 13680 against verified region 7801- 14251 - CANDIDATE hangs 1586 5537 Test read # 21 ident 60545 2199- 13752 against verified region 7801- 14251 - CANDIDATE hangs 1526 5505 - SAVED Test read # 23 ident 254826 2471- 13301 against verified region 7801- 14251 - CANDIDATE hangs 1982 5245 Test read # 27 ident 615819 2741- 8750 against verified region 7801- 14251 - CANDIDATE hangs 6417 4955 Test read # 31 ident 327542 3200- 9673 against verified region 7801- 14251 - CANDIDATE hangs 5510 4545 Test read # 32 ident 481809 3546- 9957 against verified region 7801- 14251 - CANDIDATE hangs 5213 4186 Test read # 40 ident 50483 3858- 10053 against verified region 7801- 14251 - CANDIDATE hangs 5111 3877 Test read # 41 ident 50482 3860- 10042 against verified region 7801- 14251 - CANDIDATE hangs 5134 3877 Test read # 42 ident 50484 3873- 9842 against verified region 7801- 14251 - CANDIDATE hangs 5310 3854 Test read # 43 ident 50485 3937- 10038 against verified region 7801- 14251 - CANDIDATE hangs 5124 3782 Test read # 44 ident 264984 4024- 10315 against verified region 7801- 14251 - CANDIDATE hangs 4868 3732 Test read # 48 ident 164690 4681- 12424 against verified region 7801- 14251 - CANDIDATE hangs 2846 3084 Test read # 50 ident 498784 4994- 10949 against verified region 7801- 14251 - CANDIDATE hangs 4252 2808 Test read # 53 ident 498783 5108- 10952 against verified region 7801- 14251 - CANDIDATE hangs 4254 2702 Test read # 54 ident 156661 5450- 13197 against verified region 7801- 14251 - CANDIDATE hangs 2069 2343 Test read # 56 ident 234305 5493- 9982 against verified region 7801- 14251 - CANDIDATE hangs 5192 2288 Test read # 57 ident 616667 5501- 12130 against verified region 7801- 14251 - CANDIDATE hangs 3105 2270 Test read # 59 ident 271089 5624- 14251 against verified region 7801- 14251 Test read # 60 ident 718901 5726- 10631 against verified region 7801- 14251 - CANDIDATE hangs 4596 2065 Test read # 61 ident 280701 5742- 10967 against verified region 7801- 14251 - CANDIDATE hangs 4231 2032 Test read # 62 ident 698197 5822- 10661 against verified region 7801- 14251 - CANDIDATE hangs 4565 1979 Test read # 67 ident 166874 6296- 13385 against verified region 7801- 14251 - CANDIDATE hangs 1906 1512 Test read # 69 ident 156660 6360- 13197 against verified region 7801- 14251 - CANDIDATE hangs 2068 1459 Test read # 70 ident 252818 6364- 12169 against verified region 7801- 14251 - CANDIDATE hangs 3067 1440 Test read # 71 ident 252817 6366- 12150 against verified region 7801- 14251 - CANDIDATE hangs 3089 1432 Test read # 73 ident 456323 6400- 10955 against verified region 7801- 14251 - CANDIDATE hangs 4250 1421 Test read # 74 ident 262693 6428- 10268 against verified region 7801- 14251 - CANDIDATE hangs 4927 1398 Test read # 75 ident 549240 6452- 12212 against verified region 7801- 14251 - CANDIDATE hangs 3060 1353 Test read # 76 ident 18087 6461- 10889 against verified region 7801- 14251 - CANDIDATE hangs 4328 1356 Test read # 77 ident 252816 6483- 12151 against verified region 7801- 14251 - CANDIDATE hangs 3088 1340 Test read # 79 ident 90878 7088- 10317 against verified region 7801- 14251 - CANDIDATE hangs 4871 738 Test read # 81 ident 218162 7196- 10202 against verified region 7801- 14251 - CANDIDATE hangs 4982 647 Test read # 82 ident 218161 7210- 10202 against verified region 7801- 14251 - CANDIDATE hangs 4983 623 Test read # 83 ident 705341 7222- 12827 against verified region 7801- 14251 - CANDIDATE hangs 2449 606 Test read # 85 ident 370461 7263- 13224 against verified region 7801- 14251 - CANDIDATE hangs 2051 573 Test read # 86 ident 498782 7296- 10331 against verified region 7801- 14251 - CANDIDATE hangs 4861 555 Test read # 87 ident 92129 7579- 12400 against verified region 7801- 14251 - CANDIDATE hangs 2855 248 Test read # 88 ident 610571 7946- 11623 against verified region 7801- 14251 - CANDIDATE hangs 3590 -105 Test read # 89 ident 278043 7957- 11750 against verified region 7801- 14251 - CANDIDATE hangs 3480 -115 Test read # 90 ident 194163 8016- 10282 against verified region 7801- 14251 - CANDIDATE hangs 4909 -186 Test read # 91 ident 556712 8028- 13217 against verified region 7801- 14251 - CANDIDATE hangs 2062 -186 Test read # 93 ident 366451 8226- 10814 against verified region 7801- 14251 - CANDIDATE hangs 4377 -385 Test read # 95 ident 329177 8329- 10280 against verified region 7801- 14251 - CANDIDATE hangs 4908 -500 Test read # 96 ident 279762 8359- 10888 against verified region 7801- 14251 - CANDIDATE hangs 4316 -531 Test read # 97 ident 378267 8561- 12666 against verified region 7801- 14251 - CANDIDATE hangs 2603 -727 Test read # 98 ident 295569 8629- 12666 against verified region 7801- 14251 - CANDIDATE hangs 2609 -793 Test read # 99 ident 643934 8633- 14245 against verified region 7801- 14251 - CANDIDATE hangs 1050 -789 Test read # 100 ident 549239 8740- 13262 against verified region 7801- 14251 - CANDIDATE hangs 2041 -911 Test read # 101 ident 10916 8810- 14111 against verified region 7801- 14251 - CANDIDATE hangs 1149 -973 Test read # 103 ident 622773 9199- 12893 against verified region 7801- 14251 - CANDIDATE hangs 2378 -1356 Test read # 104 ident 196531 9315- 12010 against verified region 7801- 14251 - CANDIDATE hangs 3228 -1465 Test read # 105 ident 108731 9765- 11608 against verified region 7801- 14251 - CANDIDATE hangs 3613 -1907 Test read # 106 ident 271090 9809- 14185 against verified region 7801- 14251 - CANDIDATE hangs 1099 -1929 Test read # 107 ident 311222 9838- 13736 against verified region 7801- 14251 - CANDIDATE hangs 1545 -1955 Test read # 108 ident 268816 9922- 13515 against verified region 7801- 14251 - CANDIDATE hangs 1755 -2059 Test read # 109 ident 346047 10389- 11700 against verified region 7801- 14251 - CANDIDATE hangs 3533 -2521 Test read # 110 ident 670038 10560- 12867 against verified region 7801- 14251 - CANDIDATE hangs 2417 -2680 Test read # 111 ident 14137 11695- 13746 against verified region 7801- 14251 - CANDIDATE hangs 1526 -3807 Test read # 112 ident 309996 11779- 13454 against verified region 7801- 14251 - CANDIDATE hangs 1819 -3845 Found appropriate intersecting read. createUnitigs()-- read 190346 place 1 edgeTo tig 113061 reads # 10 211689- 309996 verified 14251- 7801 position 15233- 7801 covered 1048- 7314 BREAK at pos 13752 read 60545 isLow 0 sim 0.9991 Scan reads from #17 to #76 for high coordinate in verified region 8463-12350 Test read # 17 ident 275268 147- 10936 against verified region 8463- 12350 - CANDIDATE hangs 4908 8255 - SAVED Test read # 19 ident 275269 148- 12350 against verified region 8463- 12350 Test read # 40 ident 691393 860- 12226 against verified region 8463- 12350 - CANDIDATE hangs 3590 7544 - SAVED Test read # 54 ident 659234 2549- 12011 against verified region 8463- 12350 - CANDIDATE hangs 3806 5888 Test read # 59 ident 672551 3210- 9587 against verified region 8463- 12350 - CANDIDATE hangs 6228 5255 Test read # 61 ident 415187 3395- 9769 against verified region 8463- 12350 - CANDIDATE hangs 6038 5062 Test read # 65 ident 52263 3689- 11929 against verified region 8463- 12350 - CANDIDATE hangs 3898 4783 Test read # 66 ident 327543 3956- 10323 against verified region 8463- 12350 - CANDIDATE hangs 5505 4527 Test read # 67 ident 327544 3960- 10291 against verified region 8463- 12350 - CANDIDATE hangs 5529 4515 Test read # 68 ident 327545 3986- 10302 against verified region 8463- 12350 - CANDIDATE hangs 5518 4501 Test read # 69 ident 327546 4094- 10320 against verified region 8463- 12350 - CANDIDATE hangs 5504 4388 Test read # 70 ident 524175 4460- 12207 against verified region 8463- 12350 - CANDIDATE hangs 3615 4035 Test read # 71 ident 50481 4595- 10669 against verified region 8463- 12350 - CANDIDATE hangs 5141 3881 Test read # 72 ident 50480 4603- 10671 against verified region 8463- 12350 - CANDIDATE hangs 5134 3885 Test read # 73 ident 343499 4693- 11180 against verified region 8463- 12350 - CANDIDATE hangs 4649 3794 Test read # 74 ident 343498 4695- 11310 against verified region 8463- 12350 - CANDIDATE hangs 4533 3791 Test read # 76 ident 432990 5254- 9892 against verified region 8463- 12350 - CANDIDATE hangs 5926 3233 Found appropriate intersecting read. createUnitigs()-- read 190346 place 2 edgeTo tig 113088 reads # 17 275268- 432990 verified 12350- 8463 position 15821- 8463 covered 3476- 7314 BREAK at pos 12226 read 691393 isLow 0 sim 0.9632 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- tig 515 len 11490 first read 85098 with 6 placements - last read 192870 with 1 placements createUnitigs()-- read 85098 place 0 edgeTo tig 515 reads # 1 85099- 469975 verified 8205- 6 position 8205- 0 covered 0- 8164 SELF Scan reads from #9 to #10 for low coordinate in verified region 6311-8034 Test read # 9 ident 20557 6311- 7541 against verified region 6311- 8034 Test read # 10 ident 571357 6407- 9037 against verified region 6311- 8034 - CANDIDATE hangs 6553 1002 - SAVED Found appropriate intersecting read. createUnitigs()-- read 85098 place 1 edgeTo tig 591 reads # 9 20557- 571357 verified 6311- 8034 position -149- 8034 covered 6464- 8164 BREAK at pos 6407 read 571357 isLow 1 sim 1.0000 Scan reads from #4 to #10 for high coordinate in verified region 4596-5569 Test read # 4 ident 353485 8- 5529 against verified region 4596- 5569 - CANDIDATE hangs 7268 4587 - SAVED Test read # 6 ident 449706 13- 5179 against verified region 4596- 5569 - CANDIDATE hangs 7641 4608 Test read # 10 ident 353484 27- 5569 against verified region 4596- 5569 Found appropriate intersecting read. createUnitigs()-- read 85098 place 2 edgeTo tig 1259 reads # 4 353485- 353484 verified 5569- 4596 position 12802- 4596 covered 7222- 8164 BREAK at pos 5529 read 353485 isLow 0 sim 1.0000 Scan reads from #1 to #1 for high coordinate in verified region 20239-21436 Test read # 1 ident 597983 3839- 21436 against verified region 20239- 21436 Failed to find appropriate intersecting read. createUnitigs()-- read 85098 place 3 edgeTo tig 113155 reads # 1 597983- 597983 verified 21436- 20239 position 28535- 20239 covered 7099- 8164 NO_OVERLAPS NOT_SIMILAR Scan reads from #6 to #17 for high coordinate in verified region 11177-12690 Test read # 6 ident 216964 2051- 12690 against verified region 11177- 12690 Test read # 10 ident 433684 3484- 11990 against verified region 11177- 12690 - CANDIDATE hangs 7267 7570 - SAVED Test read # 17 ident 291653 8415- 11165 against verified region 11177- 12690 - CANDIDATE hangs 7657 2219 Found appropriate intersecting read. createUnitigs()-- read 85098 place 4 edgeTo tig 113156 reads # 6 216964- 291653 verified 12690- 11177 position 19387- 11177 covered 7267- 8164 NOT_SIMILAR Scan reads from #1 to #7 for high coordinate in verified region 4599-5878 Test read # 1 ident 229679 80- 5869 against verified region 4599- 5878 - CANDIDATE hangs 6922 4521 - SAVED Test read # 2 ident 229678 83- 5878 against verified region 4599- 5878 Test read # 3 ident 229680 88- 5873 against verified region 4599- 5878 - CANDIDATE hangs 6920 4509 - SAVED Test read # 4 ident 163311 150- 5711 against verified region 4599- 5878 - CANDIDATE hangs 7099 4453 Test read # 5 ident 421601 628- 5551 against verified region 4599- 5878 - CANDIDATE hangs 7242 3964 Test read # 6 ident 662725 719- 5546 against verified region 4599- 5878 - CANDIDATE hangs 7251 3893 Test read # 7 ident 264209 964- 5423 against verified region 4599- 5878 - CANDIDATE hangs 7370 3629 Found appropriate intersecting read. createUnitigs()-- read 85098 place 5 edgeTo tig 582087 reads # 1 229679- 264209 verified 5878- 4599 position 12796- 4599 covered 6919- 8164 BREAK at pos 5873 read 229680 isLow 0 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- read 192870 place 0 edgeTo tig 515 reads # 0 85098- 469975 verified 2423- 11481 position 2423- 11487 covered 0- 9010 SELF createUnitigs()-- tig 516 len 21093 first read 199750 with 1 placements - last read 190098 with 1 placements createUnitigs()-- read 199750 place 0 edgeTo tig 516 reads # 1 155882- 421956 verified 34- 1807 position -3- 1807 covered 34- 1741 SELF EXPECTED_5' createUnitigs()-- read 190098 place 0 edgeTo tig 516 reads # 19 545313- 190100 verified 21085- 15152 position 21092- 15152 covered 0- 5926 SELF createUnitigs()-- tig 517 len 45732 first read 515208 with 4 placements - last read 202184 with 6 placements createUnitigs()-- read 515208 place 0 edgeTo tig 517 reads # 10 486098- 486098 verified 4845- 3895 position 4845- -1698 covered 0- 936 SELF EXPECTED_3' createUnitigs()-- read 515208 place 1 edgeTo tig 517 reads # 1 515210- 168410 verified 6740- 180 position 6740- 180 covered 0- 6529 SELF Scan reads from #22 to #22 for high coordinate in verified region 9564-10567 Test read # 22 ident 677749 9564- 10567 against verified region 9564- 10567 Failed to find appropriate intersecting read. createUnitigs()-- read 515208 place 2 edgeTo tig 5710 reads # 22 677749- 677749 verified 10567- 9564 position 12605- 6057 covered 2038- 3022 EXPECTED_3' NO_OVERLAPS Scan reads from #12 to #12 for high coordinate in verified region 12646-13606 Test read # 12 ident 110110 12646- 18982 against verified region 12646- 13606 Failed to find appropriate intersecting read. createUnitigs()-- read 515208 place 3 edgeTo tig 7747 reads # 12 110110- 110110 verified 13606- 12646 position 13606- 7062 covered 0- 945 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 202184 place 0 edgeTo tig 517 reads # 44 697451- 290566 verified 35000- 43730 position 35000- 45724 covered 0- 8696 SELF EXPECTED_3' Scan reads from #0 to #5 for low coordinate in verified region 6147-8196 Test read # 0 ident 15582 0- 8196 against verified region 6147- 8196 Test read # 1 ident 15579 10- 8196 against verified region 6147- 8196 Test read # 2 ident 15581 38- 8188 against verified region 6147- 8196 Test read # 3 ident 15580 79- 8192 against verified region 6147- 8196 Test read # 4 ident 15583 568- 8194 against verified region 6147- 8196 Test read # 5 ident 246020 4283- 8139 against verified region 6147- 8196 Failed to find appropriate intersecting read. createUnitigs()-- read 202184 place 1 edgeTo tig 14573 reads # 0 15582- 246020 verified 6147- 8196 position 6147- 16832 covered 0- 2053 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #16 to #19 for low coordinate in verified region 2277-3653 Test read # 16 ident 91509 2277- 8090 against verified region 2277- 3653 Test read # 17 ident 91505 2277- 8032 against verified region 2277- 3653 Test read # 19 ident 91507 2290- 8057 against verified region 2277- 3653 - CANDIDATE hangs 9383 4403 - SAVED Found appropriate intersecting read. createUnitigs()-- read 202184 place 2 edgeTo tig 28117 reads # 16 91509- 91507 verified 2277- 3653 position -7093- 3653 covered 9371- 10689 BREAK at pos 2290 read 91507 isLow 1 sim 1.0000 Scan reads from #2 to #4 for low coordinate in verified region 227-1150 Test read # 2 ident 642205 227- 8157 against verified region 227- 1150 Test read # 3 ident 642207 237- 7994 against verified region 227- 1150 - CANDIDATE hangs 9821 6827 - SAVED Test read # 4 ident 642206 243- 8191 against verified region 227- 1150 - CANDIDATE hangs 9844 7058 Found appropriate intersecting read. createUnitigs()-- read 202184 place 3 edgeTo tig 113675 reads # 2 642205- 642206 verified 227- 1150 position -9593- 1150 covered 9821- 10689 NOT_SIMILAR Scan reads from #9 to #14 for high coordinate in verified region 2224-4229 Test read # 9 ident 703184 2224- 3874 against verified region 2224- 4229 - CANDIDATE hangs 357 -8719 Test read # 10 ident 534356 2581- 6147 against verified region 2224- 4229 Test read # 11 ident 86281 2887- 9050 against verified region 2224- 4229 Test read # 12 ident 86283 2888- 9057 against verified region 2224- 4229 Test read # 13 ident 86284 2890- 9057 against verified region 2224- 4229 Test read # 14 ident 86280 2891- 6617 against verified region 2224- 4229 Failed to find appropriate intersecting read. createUnitigs()-- read 202184 place 4 edgeTo tig 582669 reads # 9 703184- 86280 verified 4229- 2224 position 4229- -6482 covered 0- 1970 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 0-1343 Test read # 0 ident 86282 0- 6178 against verified region 0- 1343 Failed to find appropriate intersecting read. createUnitigs()-- read 202184 place 5 edgeTo tig 582670 reads # 0 86282- 86282 verified 1343- 0 position 1343- -9366 covered 0- 1323 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 520 len 22003 first read 209277 with 1 placements - last read 439798 with 1 placements createUnitigs()-- read 209277 place 0 edgeTo tig 520 reads # 1 554103- 543370 verified 79- 9334 position 14- 9334 covered 75- 9308 SELF EXPECTED_5' createUnitigs()-- read 439798 place 0 edgeTo tig 520 reads # 33 497918- 82708 verified 20010- 16434 position 21984- 16434 covered 1975- 5569 SELF EXPECTED_5' createUnitigs()-- tig 525 len 34691 first read 638792 with 1 placements - last read 234155 with 1 placements createUnitigs()-- read 638792 place 0 edgeTo tig 525 reads # 1 638793- 545604 verified 6149- 19 position 6149- 19 covered 0- 6049 SELF createUnitigs()-- read 234155 place 0 edgeTo tig 525 reads # 45 201449- 234158 verified 28692- 34690 position 28692- 34695 covered 0- 5908 SELF createUnitigs()-- tig 526 len 31125 first read 270720 with 1 placements - last read 513380 with 1 placements createUnitigs()-- read 270720 place 0 edgeTo tig 526 reads # 1 270719- 412185 verified 2- 5419 position 1- 5419 covered 0- 5391 SELF createUnitigs()-- read 513380 place 0 edgeTo tig 526 reads # 14 679515- 1284 verified 22111- 30871 position 22111- 31102 covered 0- 8763 SELF EXPECTED_3' createUnitigs()-- tig 532 len 26942 first read 159516 with 1 placements - last read 289014 with 1 placements createUnitigs()-- read 159516 place 0 edgeTo tig 532 reads # 1 159517- 285532 verified 3509- 30 position 3509- -1 covered 0- 3436 SELF EXPECTED_3' createUnitigs()-- read 289014 place 0 edgeTo tig 532 reads # 31 359577- 289016 verified 26935- 21289 position 26935- 21289 covered 0- 5614 SELF createUnitigs()-- tig 535 len 42228 first read 307544 with 1 placements - last read 533629 with 1 placements createUnitigs()-- read 307544 place 0 edgeTo tig 535 reads # 1 307545- 520647 verified 4199- 5 position 4199- 5 covered 0- 4156 SELF createUnitigs()-- read 533629 place 0 edgeTo tig 535 reads # 40 556550- 666482 verified 34867- 42091 position 34867- 42153 covered 0- 7160 SELF EXPECTED_3' createUnitigs()-- tig 536 len 20868 first read 601280 with 3 placements - last read 312850 with 1 placements Scan reads from #30 to #44 for low coordinate in verified region 16927-18019 Test read # 30 ident 522438 16927- 21829 against verified region 16927- 18019 Test read # 31 ident 673661 16933- 22570 against verified region 16927- 18019 - CANDIDATE hangs -4542 -7705 - SAVED Test read # 32 ident 642460 16937- 21950 against verified region 16927- 18019 - CANDIDATE hangs -3932 -7708 Test read # 33 ident 87416 16944- 20060 against verified region 16927- 18019 - CANDIDATE hangs -2045 -7705 Test read # 35 ident 545906 16946- 19114 against verified region 16927- 18019 - CANDIDATE hangs -1119 -7709 Test read # 36 ident 635428 16947- 18529 against verified region 16927- 18019 - CANDIDATE hangs -529 -7709 Test read # 38 ident 409568 16955- 18083 against verified region 16927- 18019 - CANDIDATE hangs -73 -7711 Test read # 39 ident 199184 16957- 18498 against verified region 16927- 18019 - CANDIDATE hangs -494 -7717 Test read # 40 ident 452478 16964- 18232 against verified region 16927- 18019 - CANDIDATE hangs -219 -7719 Test read # 41 ident 112861 16969- 18255 against verified region 16927- 18019 - CANDIDATE hangs -240 -7721 Test read # 42 ident 148217 16969- 18101 against verified region 16927- 18019 - CANDIDATE hangs -87 -7721 Test read # 43 ident 598079 16990- 21785 against verified region 16927- 18019 - CANDIDATE hangs -3705 -7708 Test read # 44 ident 598078 16996- 21787 against verified region 16927- 18019 - CANDIDATE hangs -3710 -7707 Found appropriate intersecting read. createUnitigs()-- read 601280 place 0 edgeTo tig 353 reads # 30 522438- 598078 verified 18019- 16927 position 18019- 9244 covered 0- 1050 BREAK at pos 16933 read 673661 isLow 1 sim 1.0000 createUnitigs()-- read 601280 place 1 edgeTo tig 536 reads # 1 298959- 130866 verified 596- 8784 position 12- 8784 covered 590- 8755 SELF EXPECTED_5' Scan reads from #5 to #5 for low coordinate in verified region 1748-2783 Test read # 5 ident 178625 1748- 3968 against verified region 1748- 2783 Failed to find appropriate intersecting read. createUnitigs()-- read 601280 place 2 edgeTo tig 13162 reads # 5 178625- 178625 verified 2783- 1748 position 2783- -5958 covered 0- 1049 NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 312850 place 0 edgeTo tig 536 reads # 12 130865- 682265 verified 12724- 20119 position 12724- 20830 covered 0- 7348 SELF EXPECTED_3' createUnitigs()-- tig 538 len 36722 first read 635969 with 1 placements - last read 327928 with 1 placements createUnitigs()-- read 635969 place 0 edgeTo tig 538 reads # 1 488625- 318012 verified 10- 10118 position 9- 10118 covered 0- 10095 SELF createUnitigs()-- read 327928 place 0 edgeTo tig 538 reads # 29 362712- 60776 verified 27386- 36641 position 27386- 36710 covered 0- 9268 SELF EXPECTED_3' createUnitigs()-- tig 539 len 36451 first read 332132 with 1 placements - last read 170828 with 1 placements createUnitigs()-- read 332132 place 0 edgeTo tig 539 reads # 1 332133- 81536 verified 570- 7573 position 18- 7573 covered 549- 7521 SELF EXPECTED_5' createUnitigs()-- read 170828 place 0 edgeTo tig 539 reads # 33 628610- 597532 verified 26564- 36264 position 26564- 36434 covered 0- 9643 SELF EXPECTED_3' createUnitigs()-- tig 542 len 40240 first read 367974 with 1 placements - last read 605270 with 1 placements createUnitigs()-- read 367974 place 0 edgeTo tig 542 reads # 1 50535- 537359 verified 59- 2580 position 0- 2580 covered 57- 2553 SELF EXPECTED_5' createUnitigs()-- read 605270 place 0 edgeTo tig 542 reads # 26 265158- 255558 verified 24905- 32484 position 24905- 40222 covered 0- 7521 SELF EXPECTED_3' createUnitigs()-- tig 545 len 47513 first read 367895 with 4 placements - last read 385754 with 2 placements createUnitigs()-- read 367895 place 0 edgeTo tig 545 reads # 2 429253- 393176 verified 222- 4607 position -1254- 4607 covered 1405- 5724 SELF EXPECTED_5' createUnitigs()-- read 367895 place 1 edgeTo tig 545 reads # 1 530639- 661068 verified 196- 6005 position 196- 6005 covered 0- 5724 SELF createUnitigs()-- read 367895 place 2 edgeTo tig 545 reads # 10 422437- 422437 verified 6734- 4436 position 10270- 4436 covered 3536- 5724 SELF EXPECTED_5' createUnitigs()-- read 367895 place 3 edgeTo tig 545 reads # 41 151780- 205188 verified 8565- 5714 position 11443- 5681 covered 2946- 5609 SELF EXPECTED_5' createUnitigs()-- read 385754 place 0 edgeTo tig 545 reads # 78 722900- 534432 verified 34832- 44873 position 34832- 47497 covered 0- 9973 SELF EXPECTED_3' Scan reads from #17 to #19 for high coordinate in verified region 9422-10516 Test read # 17 ident 703267 9422- 17140 against verified region 9422- 10516 Test read # 18 ident 703266 9422- 17058 against verified region 9422- 10516 Test read # 19 ident 595066 9951- 12121 against verified region 9422- 10516 Failed to find appropriate intersecting read. createUnitigs()-- read 385754 place 1 edgeTo tig 25766 reads # 17 703267- 595066 verified 10516- 9422 position 10516- -2127 covered 0- 1078 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 549 len 31888 first read 19815 with 1 placements - last read 258354 with 1 placements createUnitigs()-- read 19815 place 0 edgeTo tig 549 reads # 1 403576- 516267 verified 5811- 8 position 5811- 8 covered 0- 5800 SELF createUnitigs()-- read 258354 place 0 edgeTo tig 549 reads # 31 25578- 8465 verified 31884- 24534 position 31884- 24534 covered 0- 7329 SELF createUnitigs()-- tig 551 len 35606 first read 430151 with 1 placements - last read 621506 with 3 placements createUnitigs()-- read 430151 place 0 edgeTo tig 551 reads # 1 430153- 318430 verified 6- 8242 position 6- 8242 covered 0- 8218 SELF createUnitigs()-- read 621506 place 0 edgeTo tig 551 reads # 33 361387- 81469 verified 27139- 33770 position 27139- 35595 covered 0- 6570 SELF EXPECTED_3' Scan reads from #14 to #14 for high coordinate in verified region 6142-8377 Test read # 14 ident 17591 6142- 8377 against verified region 6142- 8377 Failed to find appropriate intersecting read. createUnitigs()-- read 621506 place 1 edgeTo tig 6129 reads # 14 17591- 17591 verified 8377- 6142 position 14051- 5607 covered 5674- 7893 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #23 to #38 for high coordinate in verified region 2775-7560 Test read # 23 ident 610163 2562- 5929 against verified region 2775- 7560 - CANDIDATE hangs 4068 -1051 - SAVED Test read # 32 ident 17590 3771- 6970 against verified region 2775- 7560 - CANDIDATE hangs 4729 -544 Test read # 33 ident 564546 3775- 7154 against verified region 2775- 7560 - CANDIDATE hangs 4038 -1017 Test read # 34 ident 135030 3839- 6966 against verified region 2775- 7560 - CANDIDATE hangs 4066 -1258 Test read # 35 ident 303039 3883- 6390 against verified region 2775- 7560 - CANDIDATE hangs 5286 -691 Test read # 37 ident 203233 4677- 7560 against verified region 2775- 7560 Test read # 38 ident 544824 5035- 7347 against verified region 2775- 7560 - CANDIDATE hangs 4066 -2052 Found appropriate intersecting read. createUnitigs()-- read 621506 place 2 edgeTo tig 113625 reads # 23 610163- 544824 verified 7560- 2775 position 11233- 2775 covered 4038- 7884 EXPECTED_3' createUnitigs()-- tig 553 len 19383 first read 436210 with 1 placements - last read 135765 with 1 placements createUnitigs()-- read 436210 place 0 edgeTo tig 553 reads # 1 122385- 139421 verified 13- 2606 position 13- 2606 covered 0- 2541 SELF createUnitigs()-- read 135765 place 0 edgeTo tig 553 reads # 9 148670- 212462 verified 10676- 18438 position 10676- 19344 covered 0- 7653 SELF EXPECTED_3' createUnitigs()-- tig 563 len 33311 first read 219622 with 1 placements - last read 469117 with 1 placements createUnitigs()-- read 219622 place 0 edgeTo tig 563 reads # 1 593566- 270908 verified 3- 4690 position -4- 4690 covered 11- 4657 SELF EXPECTED_5' createUnitigs()-- read 469117 place 0 edgeTo tig 563 reads # 32 559630- 32479 verified 25709- 33309 position 25709- 33311 covered 0- 7573 SELF createUnitigs()-- tig 564 len 46529 first read 473783 with 1 placements - last read 230426 with 1 placements createUnitigs()-- read 473783 place 0 edgeTo tig 564 reads # 1 506976- 506974 verified 2690- 7815 position 5- 7815 covered 2680- 7795 SELF EXPECTED_5' createUnitigs()-- read 230426 place 0 edgeTo tig 564 reads # 36 357429- 230427 verified 43018- 36659 position 46525- 36659 covered 3506- 9859 SELF EXPECTED_5' createUnitigs()-- tig 570 len 23329 first read 349374 with 1 placements - last read 503588 with 2 placements createUnitigs()-- read 349374 place 0 edgeTo tig 570 reads # 1 349375- 570633 verified 142- 9182 position 15- 9182 covered 151- 9127 SELF EXPECTED_5' createUnitigs()-- read 503588 place 0 edgeTo tig 570 reads # 43 534988- 665463 verified 15219- 23264 position 15219- 23271 covered 0- 7960 SELF EXPECTED_3' Scan reads from #13 to #14 for high coordinate in verified region 12417-13630 Test read # 13 ident 286729 11557- 13630 against verified region 12417- 13630 Test read # 14 ident 390418 12566- 13628 against verified region 12417- 13630 - CANDIDATE hangs 6798 -156 Failed to find appropriate intersecting read. createUnitigs()-- read 503588 place 1 edgeTo tig 582855 reads # 13 286729- 390418 verified 13630- 12417 position 20427- 12413 covered 6798- 8026 NO_OVERLAPS createUnitigs()-- tig 573 len 35962 first read 240981 with 2 placements - last read 526060 with 1 placements createUnitigs()-- read 240981 place 0 edgeTo tig 573 reads # 1 240982- 606979 verified 41- 10201 position 41- 10201 covered 0- 10124 SELF Scan reads from #53 to #73 for high coordinate in verified region 15335-19992 Test read # 53 ident 651144 11156- 16508 against verified region 15335- 19992 - CANDIDATE hangs -4160 -8968 - SAVED Test read # 57 ident 328103 11750- 19551 against verified region 15335- 19992 - CANDIDATE hangs -3571 -5928 - SAVED Test read # 58 ident 692936 11826- 19305 against verified region 15335- 19992 - CANDIDATE hangs -3503 -6171 Test read # 59 ident 692934 11828- 19303 against verified region 15335- 19992 - CANDIDATE hangs -3499 -6171 Test read # 60 ident 692935 11829- 19299 against verified region 15335- 19992 - CANDIDATE hangs -3498 -6171 Test read # 62 ident 692933 11836- 19298 against verified region 15335- 19992 - CANDIDATE hangs -3489 -6176 Test read # 64 ident 692932 11866- 16276 against verified region 15335- 19992 - CANDIDATE hangs -3459 -9202 Test read # 65 ident 191322 13009- 17504 against verified region 15335- 19992 - CANDIDATE hangs -2340 -7956 Test read # 66 ident 650982 13541- 19992 against verified region 15335- 19992 Test read # 67 ident 146656 14155- 16485 against verified region 15335- 19992 - CANDIDATE hangs -1197 -8991 Test read # 68 ident 324634 14582- 18665 against verified region 15335- 19992 - CANDIDATE hangs -769 -6808 Test read # 69 ident 223245 14648- 16655 against verified region 15335- 19992 - CANDIDATE hangs -704 -8819 Test read # 70 ident 702481 16183- 19304 against verified region 15335- 19992 - CANDIDATE hangs 829 -6171 Test read # 71 ident 702482 17331- 19301 against verified region 15335- 19992 - CANDIDATE hangs 1998 -6173 Test read # 72 ident 564643 17333- 19459 against verified region 15335- 19992 - CANDIDATE hangs 2005 -6019 Test read # 73 ident 564644 17340- 19497 against verified region 15335- 19992 - CANDIDATE hangs 2007 -5973 Found appropriate intersecting read. createUnitigs()-- read 240981 place 1 edgeTo tig 573 reads # 53 651144- 564644 verified 15335- 19992 position 15335- 25480 covered 0- 4543 BREAK at pos 19551 read 328103 isLow 0 sim 1.0000 createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- read 526060 place 0 edgeTo tig 573 reads # 79 526057- 526057 verified 29492- 35952 position 29492- 35966 covered 0- 6454 SELF EXPECTED_3' createUnitigs()-- tig 574 len 18855 first read 230037 with 1 placements - last read 551307 with 3 placements createUnitigs()-- read 230037 place 0 edgeTo tig 574 reads # 1 527019- 61384 verified 21- 3267 position 21- 3267 covered 0- 3263 SELF Scan reads from #36 to #110 for high coordinate in verified region 42366-47299 Test read # 36 ident 531909 35847- 46945 against verified region 42366- 47299 - CANDIDATE hangs -6483 -5853 - SAVED Test read # 42 ident 479152 35859- 47299 against verified region 42366- 47299 Test read # 44 ident 475138 35862- 47003 against verified region 42366- 47299 - CANDIDATE hangs -6466 -5805 - SAVED Test read # 53 ident 139256 36143- 43555 against verified region 42366- 47299 - CANDIDATE hangs -6190 -9224 Test read # 54 ident 139255 36167- 45925 against verified region 42366- 47299 - CANDIDATE hangs -6154 -6852 Test read # 57 ident 535323 36630- 42938 against verified region 42366- 47299 - CANDIDATE hangs -5703 -9834 Test read # 62 ident 191201 37577- 43437 against verified region 42366- 47299 - CANDIDATE hangs -4759 -9334 Test read # 63 ident 494409 37579- 46483 against verified region 42366- 47299 - CANDIDATE hangs -4761 -6315 Test read # 64 ident 494410 37587- 46502 against verified region 42366- 47299 - CANDIDATE hangs -4754 -6301 Test read # 65 ident 262265 37653- 44632 against verified region 42366- 47299 - CANDIDATE hangs -4693 -8158 Test read # 67 ident 262267 37670- 44507 against verified region 42366- 47299 - CANDIDATE hangs -4668 -8275 Test read # 72 ident 262266 38612- 44570 against verified region 42366- 47299 - CANDIDATE hangs -3748 -8211 Test read # 73 ident 166274 38747- 46346 against verified region 42366- 47299 - CANDIDATE hangs -3596 -6444 Test read # 74 ident 166275 38792- 46292 against verified region 42366- 47299 - CANDIDATE hangs -3558 -6503 Test read # 75 ident 357263 38872- 45143 against verified region 42366- 47299 - CANDIDATE hangs -3476 -7639 Test read # 76 ident 357262 38897- 46938 against verified region 42366- 47299 - CANDIDATE hangs -3450 -5855 Test read # 77 ident 256262 38906- 43478 against verified region 42366- 47299 - CANDIDATE hangs -3438 -9296 Test read # 79 ident 30245 38979- 46941 against verified region 42366- 47299 - CANDIDATE hangs -3362 -5852 Test read # 81 ident 30244 38991- 46543 against verified region 42366- 47299 - CANDIDATE hangs -3341 -6240 Test read # 82 ident 325292 39071- 43102 against verified region 42366- 47299 - CANDIDATE hangs -3302 -9675 Test read # 84 ident 405588 39162- 43751 against verified region 42366- 47299 - CANDIDATE hangs -3197 -9022 Test read # 85 ident 395043 39285- 44388 against verified region 42366- 47299 - CANDIDATE hangs -3070 -8388 Test read # 87 ident 419171 39482- 44027 against verified region 42366- 47299 - CANDIDATE hangs -2871 -8745 Test read # 88 ident 261762 39484- 44230 against verified region 42366- 47299 - CANDIDATE hangs -2853 -8541 Test read # 91 ident 533551 39603- 47017 against verified region 42366- 47299 - CANDIDATE hangs -2750 -5785 - SAVED Test read # 92 ident 533552 39614- 44997 against verified region 42366- 47299 - CANDIDATE hangs -2741 -7789 Test read # 93 ident 230011 39796- 45164 against verified region 42366- 47299 - CANDIDATE hangs -2555 -7616 Test read # 95 ident 517512 40058- 45012 against verified region 42366- 47299 - CANDIDATE hangs -2302 -7753 Test read # 96 ident 517511 40078- 44355 against verified region 42366- 47299 - CANDIDATE hangs -2244 -8394 Test read # 97 ident 523012 40491- 43918 against verified region 42366- 47299 - CANDIDATE hangs -1900 -8876 Test read # 98 ident 530861 41417- 46948 against verified region 42366- 47299 - CANDIDATE hangs -983 -5852 Test read # 99 ident 211083 41669- 46447 against verified region 42366- 47299 - CANDIDATE hangs -735 -6343 Test read # 101 ident 31776 42153- 46470 against verified region 42366- 47299 - CANDIDATE hangs -252 -6321 Test read # 102 ident 166276 42242- 46148 against verified region 42366- 47299 - CANDIDATE hangs -149 -6664 Test read # 103 ident 145763 42830- 44815 against verified region 42366- 47299 - CANDIDATE hangs 419 -7970 Test read # 104 ident 310639 44679- 46935 against verified region 42366- 47299 - CANDIDATE hangs 2246 -5852 Test read # 105 ident 530981 45342- 46941 against verified region 42366- 47299 - CANDIDATE hangs 2912 -5853 Test read # 106 ident 346560 45457- 46940 against verified region 42366- 47299 - CANDIDATE hangs 3027 -5853 Test read # 107 ident 346563 45480- 46905 against verified region 42366- 47299 - CANDIDATE hangs 3044 -5873 Test read # 108 ident 65635 45522- 47035 against verified region 42366- 47299 - CANDIDATE hangs 3092 -5779 Test read # 109 ident 14524 45525- 46934 against verified region 42366- 47299 - CANDIDATE hangs 3092 -5853 Test read # 110 ident 346561 45599- 46770 against verified region 42366- 47299 - CANDIDATE hangs 3164 -6012 Found appropriate intersecting read. createUnitigs()-- read 551307 place 0 edgeTo tig 459 reads # 36 531909- 346561 verified 42366- 47299 position 42366- 52787 covered 0- 4792 BREAK at pos 47017 read 533551 isLow 0 sim 1.0000 createUnitigs()-- read 551307 place 1 edgeTo tig 574 reads # 5 509214- 391426 verified 18302- 8451 position 18822- 8451 covered 546- 10356 SELF EXPECTED_5' Scan reads from #25 to #34 for low coordinate in verified region 13073-17104 Test read # 25 ident 218078 13073- 15939 against verified region 13073- 17104 Test read # 26 ident 208572 13074- 16644 against verified region 13073- 17104 - CANDIDATE hangs 1006 -5831 Test read # 27 ident 1548 13090- 14853 against verified region 13073- 17104 - CANDIDATE hangs 2777 -5851 Test read # 28 ident 418365 13099- 16383 against verified region 13073- 17104 - CANDIDATE hangs 1277 -5860 Test read # 29 ident 218077 13099- 14803 against verified region 13073- 17104 - CANDIDATE hangs 2825 -5857 Test read # 30 ident 343535 13099- 14721 against verified region 13073- 17104 - CANDIDATE hangs 2902 -5854 Test read # 31 ident 135931 13113- 17023 against verified region 13073- 17104 - CANDIDATE hangs 627 -5870 Test read # 32 ident 41182 13114- 17104 against verified region 13073- 17104 - CANDIDATE hangs 549 -5873 Test read # 33 ident 699435 13220- 16304 against verified region 13073- 17104 - CANDIDATE hangs 1358 -5984 Test read # 34 ident 208573 15064- 16408 against verified region 13073- 17104 - CANDIDATE hangs 1249 -7799 Failed to find appropriate intersecting read. createUnitigs()-- read 551307 place 2 edgeTo tig 113508 reads # 25 218078- 208573 verified 17104- 13073 position 17646- 7243 covered 549- 4525 EXPECTED_5' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. createUnitigs()-- tig 576 len 37823 first read 533430 with 1 placements - last read 373654 with 1 placements createUnitigs()-- read 533430 place 0 edgeTo tig 576 reads # 1 533432- 244430 verified 21- 7129 position 4- 7129 covered 0- 7089 SELF createUnitigs()-- read 373654 place 0 edgeTo tig 576 reads # 65 129281- 373656 verified 29947- 37156 position 29947- 37836 covered 0- 6978 SELF EXPECTED_3' createUnitigs()-- tig 591 len 9037 first read 603615 with 2 placements - last read 571357 with 9 placements createUnitigs()-- read 603615 place 0 edgeTo tig 591 reads # 1 430747- 571357 verified 7382- 33 position 7382- 23 covered 0- 7355 SELF Scan reads from #1 to #3 for low coordinate in verified region 5244-5878 Test read # 1 ident 229679 80- 5869 against verified region 5244- 5878 Test read # 2 ident 229678 83- 5878 against verified region 5244- 5878 Test read # 3 ident 229680 88- 5873 against verified region 5244- 5878 Failed to find appropriate intersecting read. createUnitigs()-- read 603615 place 1 edgeTo tig 582087 reads # 1 229679- 229680 verified 5244- 5878 position 5244- 12631 covered 0- 598 EXPECTED_3' NO_OVERLAPS Scan reads from #0 to #3 for high coordinate in verified region 0-1662 Test read # 0 ident 85098 0- 8208 against verified region 0- 1662 Test read # 1 ident 85099 4- 8204 against verified region 0- 1662 Test read # 2 ident 85096 6- 7251 against verified region 0- 1662 Test read # 3 ident 85097 8- 8211 against verified region 0- 1662 Failed to find appropriate intersecting read. createUnitigs()-- read 571357 place 0 edgeTo tig 515 reads # 0 85098- 85097 verified 1662- 0 position 1662- -997 covered 0- 1615 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- read 571357 place 1 edgeTo tig 591 reads # 0 603615- 571358 verified 6364- 9018 position 6364- 9033 covered 0- 2612 SELF Scan reads from #4 to #12 for high coordinate in verified region 3629-5569 Test read # 4 ident 353485 8- 5529 against verified region 3629- 5569 - CANDIDATE hangs 707 3616 - SAVED Test read # 6 ident 449706 13- 5179 against verified region 3629- 5569 - CANDIDATE hangs 1081 3626 Test read # 7 ident 708969 19- 5202 against verified region 3629- 5569 - CANDIDATE hangs 1058 3609 Test read # 9 ident 47496 25- 4544 against verified region 3629- 5569 - CANDIDATE hangs 1718 3612 Test read # 10 ident 353484 27- 5569 against verified region 3629- 5569 Test read # 12 ident 229677 104- 4451 against verified region 3629- 5569 - CANDIDATE hangs 1815 3536 Found appropriate intersecting read. createUnitigs()-- read 571357 place 2 edgeTo tig 1259 reads # 4 353485- 229677 verified 5569- 3629 position 6252- 3629 covered 661- 2612 BREAK at pos 5529 read 353485 isLow 0 sim 1.0000 Scan reads from #11 to #12 for high coordinate in verified region 13161-14065 Test read # 11 ident 194681 5987- 13902 against verified region 13161- 14065 - CANDIDATE hangs 1946 7178 - SAVED Test read # 12 ident 194680 6012- 14065 against verified region 13161- 14065 Found appropriate intersecting read. createUnitigs()-- read 571357 place 3 edgeTo tig 113155 reads # 11 194681- 194680 verified 14065- 13161 position 15844- 13161 covered 1776- 2612 NOT_SIMILAR Scan reads from #1 to #1 for high coordinate in verified region 19258-21436 Test read # 1 ident 597983 3839- 21436 against verified region 19258- 21436 Failed to find appropriate intersecting read. createUnitigs()-- read 571357 place 4 edgeTo tig 113155 reads # 1 597983- 597983 verified 21436- 19258 position 21972- 19258 covered 536- 2612 NO_OVERLAPS NOT_SIMILAR Scan reads from #17 to #17 for high coordinate in verified region 9650-11165 Test read # 17 ident 291653 8415- 11165 against verified region 9650- 11165 Failed to find appropriate intersecting read. createUnitigs()-- read 571357 place 5 edgeTo tig 113156 reads # 17 291653- 291653 verified 11165- 9650 position 12262- 9650 covered 1097- 2612 NO_OVERLAPS Scan reads from #10 to #15 for high coordinate in verified region 10243-11990 Test read # 10 ident 433684 3484- 11990 against verified region 10243- 11990 Test read # 11 ident 602736 6778- 11051 against verified region 10243- 11990 - CANDIDATE hangs 1977 3606 - SAVED Test read # 12 ident 602737 6780- 11032 against verified region 10243- 11990 - CANDIDATE hangs 1993 3599 Test read # 15 ident 186768 7501- 11443 against verified region 10243- 11990 - CANDIDATE hangs 1318 2638 - SAVED Found appropriate intersecting read. createUnitigs()-- read 571357 place 6 edgeTo tig 113156 reads # 10 433684- 186768 verified 11990- 10243 position 12877- 10243 covered 706- 2612 BREAK at pos 11443 read 186768 isLow 0 sim 0.8060 Scan reads from #6 to #6 for high coordinate in verified region 10860-12690 Test read # 6 ident 216964 2051- 12690 against verified region 10860- 12690 Failed to find appropriate intersecting read. createUnitigs()-- read 571357 place 7 edgeTo tig 113156 reads # 6 216964- 216964 verified 12690- 10860 position 13522- 10860 covered 832- 2612 NO_OVERLAPS NOT_SIMILAR Scan reads from #1 to #7 for high coordinate in verified region 3620-5878 Test read # 1 ident 229679 80- 5869 against verified region 3620- 5878 - CANDIDATE hangs 355 3544 - SAVED Test read # 2 ident 229678 83- 5878 against verified region 3620- 5878 Test read # 3 ident 229680 88- 5873 against verified region 3620- 5878 - CANDIDATE hangs 353 3526 - SAVED Test read # 4 ident 163311 150- 5711 against verified region 3620- 5878 - CANDIDATE hangs 535 3467 Test read # 5 ident 421601 628- 5551 against verified region 3620- 5878 - CANDIDATE hangs 681 2982 Test read # 6 ident 662725 719- 5546 against verified region 3620- 5878 - CANDIDATE hangs 690 2919 Test read # 7 ident 264209 964- 5423 against verified region 3620- 5878 - CANDIDATE hangs 809 2655 Found appropriate intersecting read. createUnitigs()-- read 571357 place 8 edgeTo tig 582087 reads # 1 229679- 264209 verified 5878- 3620 position 6232- 3620 covered 352- 2612 BREAK at pos 5873 read 229680 isLow 0 sim 1.0000 createUnitigs()-- discarding 3 breakpoints. createUnitigs()-- tig 592 len 24014 first read 269648 with 7 placements - last read 560410 with 1 placements Scan reads from #242 to #247 for low coordinate in verified region 34357-35377 Test read # 242 ident 56209 34357- 41733 against verified region 34357- 35377 Test read # 247 ident 56210 34376- 41724 against verified region 34357- 35377 - CANDIDATE hangs -6344 -5118 - SAVED Found appropriate intersecting read. createUnitigs()-- read 269648 place 0 edgeTo tig 98 reads # 242 56209- 56210 verified 35377- 34357 position 35377- 29257 covered 0- 938 NOT_SIMILAR createUnitigs()-- read 269648 place 1 edgeTo tig 592 reads # 1 269646- 269646 verified 27- 6080 position 2- 6080 covered 25- 6038 SELF EXPECTED_5' Scan reads from #2 to #2 for high coordinate in verified region 2-1140 Test read # 2 ident 531935 2- 6284 against verified region 2- 1140 Failed to find appropriate intersecting read. createUnitigs()-- read 269648 place 2 edgeTo tig 4582 reads # 2 531935- 531935 verified 2- 1140 position -4897- 1140 covered 4899- 6038 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #10 to #10 for low coordinate in verified region 10182-10891 Test read # 10 ident 712104 4201- 10891 against verified region 10182- 10891 Failed to find appropriate intersecting read. createUnitigs()-- read 269648 place 3 edgeTo tig 113520 reads # 10 712104- 712104 verified 10891- 10182 position 16237- 10182 covered 5346- 6038 EXPECTED_5' NO_OVERLAPS Scan reads from #18 to #18 for low coordinate in verified region 14170-15025 Test read # 18 ident 444639 7785- 15025 against verified region 14170- 15025 Failed to find appropriate intersecting read. createUnitigs()-- read 269648 place 4 edgeTo tig 582113 reads # 18 444639- 444639 verified 15025- 14170 position 20268- 14170 covered 5243- 6038 EXPECTED_5' NO_OVERLAPS Scan reads from #0 to #0 for high coordinate in verified region 5704-6372 Test read # 0 ident 557637 0- 6372 against verified region 5704- 6372 Failed to find appropriate intersecting read. createUnitigs()-- read 269648 place 5 edgeTo tig 582474 reads # 0 557637- 557637 verified 5704- 6372 position 5704- 11796 covered 0- 614 NO_OVERLAPS Scan reads from #0 to #2 for high coordinate in verified region 5714-6375 Test read # 0 ident 557634 0- 6373 against verified region 5714- 6375 - CANDIDATE hangs -5718 -5421 - SAVED Test read # 2 ident 557636 2- 6375 against verified region 5714- 6375 Found appropriate intersecting read. createUnitigs()-- read 269648 place 6 edgeTo tig 582475 reads # 0 557634- 557636 verified 5714- 6375 position 5714- 11793 covered 0- 620 NOT_SIMILAR createUnitigs()-- read 560410 place 0 edgeTo tig 592 reads # 13 600356- 273532 verified 18646- 24010 position 18646- 24011 covered 0- 5348 SELF createUnitigs()-- tig 598 len 31355 first read 621162 with 1 placements - last read 430032 with 3 placements createUnitigs()-- read 621162 place 0 edgeTo tig 598 reads # 1 498838- 491312 verified 10- 6719 position 9- 6719 covered 0- 6708 SELF createUnitigs()-- read 430032 place 0 edgeTo tig 598 reads # 45 109223- 532540 verified 31159- 24361 position 31344- 24361 covered 205- 6962 SELF EXPECTED_5' Scan reads from #67 to #67 for low coordinate in verified region 9363-10414 Test read # 67 ident 191254 9363- 10414 against verified region 9363- 10414 Failed to find appropriate intersecting read. createUnitigs()-- read 430032 place 1 edgeTo tig 2032 reads # 67 191254- 191254 verified 10414- 9363 position 11683- 4693 covered 1269- 2292 EXPECTED_5' NO_OVERLAPS Scan reads from #1 to #1 for low coordinate in verified region 247-1332 Test read # 1 ident 513989 247- 1332 against verified region 247- 1332 Failed to find appropriate intersecting read. createUnitigs()-- read 430032 place 2 edgeTo tig 113845 reads # 1 513989- 513989 verified 1332- 247 position 2543- -4427 covered 1211- 2288 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- tig 609 len 6926 first read 218036 with 2 placements - last read 665321 with 1 placements Scan reads from #36 to #36 for high coordinate in verified region 34393-36897 Test read # 36 ident 441885 28265- 36897 against verified region 34393- 36897 Failed to find appropriate intersecting read. createUnitigs()-- read 218036 place 0 edgeTo tig 102 reads # 36 441885- 441885 verified 34393- 36897 position 34393- 40518 covered 0- 2463 NO_OVERLAPS createUnitigs()-- read 218036 place 1 edgeTo tig 609 reads # 1 218040- 665319 verified 13- 6093 position 3- 6093 covered 1- 6084 SELF EXPECTED_5' createUnitigs()-- read 665321 place 0 edgeTo tig 609 reads # 0 218036- 665319 verified 2374- 6924 position 2374- 6925 covered 0- 4528 SELF createUnitigs()-- tig 613 len 5989 first read 672224 with 3 placements - last read 672221 with 3 placements Scan reads from #64 to #77 for high coordinate in verified region 25240-29959 Test read # 64 ident 112370 17301- 28352 against verified region 25240- 29959 - CANDIDATE hangs 2857 7940 - SAVED Test read # 66 ident 112371 23043- 28351 against verified region 25240- 29959 - CANDIDATE hangs 2857 2195 Test read # 67 ident 154993 25634- 29560 against verified region 25240- 29959 - CANDIDATE hangs 1665 -409 Test read # 68 ident 261264 25786- 29959 against verified region 25240- 29959 Test read # 73 ident 469364 27235- 28495 against verified region 25240- 29959 - CANDIDATE hangs 2714 -1992 Test read # 75 ident 280063 27480- 28888 against verified region 25240- 29959 - CANDIDATE hangs 2326 -2234 Test read # 76 ident 356714 27502- 29012 against verified region 25240- 29959 - CANDIDATE hangs 2193 -2251 Test read # 77 ident 396684 27808- 29131 against verified region 25240- 29959 - CANDIDATE hangs 2081 -2561 Found appropriate intersecting read. createUnitigs()-- read 672224 place 0 edgeTo tig 286 reads # 64 112370- 396684 verified 29959- 25240 position 31211- 25240 covered 1253- 5959 BREAK at pos 28352 read 112370 isLow 0 sim 0.8843 createUnitigs()-- read 672224 place 1 edgeTo tig 613 reads # 1 672227- 690693 verified 5976- 4 position 5976- 1 covered 0- 5958 SELF EXPECTED_3' Scan reads from #8 to #8 for high coordinate in verified region 4776-5457 Test read # 8 ident 345994 4776- 9218 against verified region 4776- 5457 Failed to find appropriate intersecting read. createUnitigs()-- read 672224 place 2 edgeTo tig 16802 reads # 8 345994- 345994 verified 5457- 4776 position 5457- -548 covered 0- 635 EXPECTED_3' NO_OVERLAPS createUnitigs()-- saving 1 breakpoints to master list. Scan reads from #64 to #77 for low coordinate in verified region 25716-29959 Test read # 64 ident 112370 17301- 28352 against verified region 25716- 29959 Test read # 66 ident 112371 23043- 28351 against verified region 25716- 29959 Test read # 67 ident 154993 25634- 29560 against verified region 25716- 29959 Test read # 68 ident 261264 25786- 29959 against verified region 25716- 29959 - CANDIDATE hangs 73 -1265 Test read # 73 ident 469364 27235- 28495 against verified region 25716- 29959 - CANDIDATE hangs 1531 -2729 Test read # 75 ident 280063 27480- 28888 against verified region 25716- 29959 - CANDIDATE hangs 1772 -2338 Test read # 76 ident 356714 27502- 29012 against verified region 25716- 29959 - CANDIDATE hangs 1789 -2204 Test read # 77 ident 396684 27808- 29131 against verified region 25716- 29959 - CANDIDATE hangs 2099 -2091 Failed to find appropriate intersecting read. createUnitigs()-- read 672221 place 0 edgeTo tig 286 reads # 64 112370- 396684 verified 25716- 29959 position 25712- 31224 covered 0- 4233 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 672221 place 1 edgeTo tig 613 reads # 0 672224- 690693 verified 486- 5985 position 485- 5985 covered 0- 5497 SELF EXPECTED_3' Scan reads from #8 to #8 for low coordinate in verified region 4776-5468 Test read # 8 ident 345994 4776- 9218 against verified region 4776- 5468 Failed to find appropriate intersecting read. createUnitigs()-- read 672221 place 2 edgeTo tig 16802 reads # 8 345994- 345994 verified 4776- 5468 position -80- 5468 covered 4856- 5498 NO_OVERLAPS createUnitigs()-- tig 621 len 43552 first read 702187 with 1 placements - last read 541322 with 1 placements createUnitigs()-- read 702187 place 0 edgeTo tig 621 reads # 1 702185- 288719 verified 12- 13592 position -1- 13592 covered 0- 13561 SELF createUnitigs()-- read 541322 place 0 edgeTo tig 621 reads # 28 178098- 55084 verified 43314- 26410 position 43506- 26410 covered 210- 17082 SELF EXPECTED_5' createUnitigs()-- tig 623 len 24772 first read 715268 with 4 placements - last read 715267 with 1 placements createUnitigs()-- read 715268 place 0 edgeTo tig 623 reads # 1 619940- 715266 verified 11278- 48 position 11278- 6 covered 0- 11152 SELF EXPECTED_3' Scan reads from #16 to #16 for low coordinate in verified region 5402-6833 Test read # 16 ident 280138 5402- 6833 against verified region 5402- 6833 Failed to find appropriate intersecting read. createUnitigs()-- read 715268 place 1 edgeTo tig 2200 reads # 16 280138- 280138 verified 5402- 6833 position -1133- 10071 covered 6535- 7978 EXPECTED_3' NO_OVERLAPS Scan reads from #2 to #3 for low coordinate in verified region 33-5261 Test read # 2 ident 494244 33- 5261 against verified region 33- 5261 Test read # 3 ident 652449 374- 5258 against verified region 33- 5261 - CANDIDATE hangs 2919 -3197 Failed to find appropriate intersecting read. createUnitigs()-- read 715268 place 2 edgeTo tig 25554 reads # 2 494244- 652449 verified 33- 5261 position -2544- 8455 covered 2577- 8021 EXPECTED_3' NO_OVERLAPS NOT_SIMILAR Scan reads from #23 to #27 for high coordinate in verified region 22287-27543 Test read # 23 ident 564923 22287- 27543 against verified region 22287- 27543 Test read # 24 ident 318320 22300- 25643 against verified region 22287- 27543 - CANDIDATE hangs 4695 -3195 Test read # 26 ident 467037 22340- 25759 against verified region 22287- 27543 - CANDIDATE hangs 4581 -3241 Test read # 27 ident 289348 22385- 27543 against verified region 22287- 27543 Failed to find appropriate intersecting read. createUnitigs()-- read 715268 place 3 edgeTo tig 582180 reads # 23 564923- 289348 verified 27543- 22287 position 30231- 19097 covered 2579- 8021 EXPECTED_3' NO_OVERLAPS createUnitigs()-- read 715267 place 0 edgeTo tig 623 reads # 14 715266- 37824 verified 24761- 15232 position 24761- 15230 covered 0- 9547 SELF createUnitigs()-- tig 624 len 28179 first read 721147 with 1 placements - last read 117382 with 3 placements createUnitigs()-- read 721147 place 0 edgeTo tig 624 reads # 1 557373- 549346 verified 27- 6557 position 7- 6557 covered 34- 6490 SELF EXPECTED_5' createUnitigs()-- read 117382 place 0 edgeTo tig 624 reads # 43 465084- 583451 verified 25761- 19377 position 28169- 19377 covered 2411- 8743 SELF EXPECTED_5' Scan reads from #3 to #6 for low coordinate in verified region 83-4832 Test read # 3 ident 363534 83- 4438 against verified region 83- 4832 Test read # 4 ident 363536 91- 4450 against verified region 83- 4832 - CANDIDATE hangs 3886 -514 Test read # 5 ident 363533 435- 4447 against verified region 83- 4832 - CANDIDATE hangs 3888 -856 Test read # 6 ident 374789 479- 4832 against verified region 83- 4832 - CANDIDATE hangs 3503 -901 Failed to find appropriate intersecting read. createUnitigs()-- read 117382 place 1 edgeTo tig 21560 reads # 3 363534- 374789 verified 4832- 83 position 8335- -423 covered 3503- 8234 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #11 for low coordinate in verified region 0-4751 Test read # 0 ident 363535 0- 3534 against verified region 0- 4751 Test read # 1 ident 129781 74- 1494 against verified region 0- 4751 - CANDIDATE hangs 6752 -599 Test read # 2 ident 628214 88- 2108 against verified region 0- 4751 - CANDIDATE hangs 6133 -606 Test read # 3 ident 181408 90- 2156 against verified region 0- 4751 - CANDIDATE hangs 6089 -609 Test read # 4 ident 548493 108- 1137 against verified region 0- 4751 - CANDIDATE hangs 7100 -627 Test read # 5 ident 188278 153- 3989 against verified region 0- 4751 - CANDIDATE hangs 4289 -676 Test read # 6 ident 360487 347- 3987 against verified region 0- 4751 - CANDIDATE hangs 4295 -861 Test read # 7 ident 451521 1625- 4364 against verified region 0- 4751 - CANDIDATE hangs 3919 -2119 Test read # 8 ident 354898 1660- 4544 against verified region 0- 4751 - CANDIDATE hangs 3746 -2158 Test read # 9 ident 630464 2293- 4751 against verified region 0- 4751 - CANDIDATE hangs 3534 -2784 Test read # 10 ident 713589 2607- 4505 against verified region 0- 4751 - CANDIDATE hangs 3777 -3093 Test read # 11 ident 363532 3034- 4387 against verified region 0- 4751 - CANDIDATE hangs 3894 -3523 Failed to find appropriate intersecting read. createUnitigs()-- read 117382 place 2 edgeTo tig 113677 reads # 0 363535- 363532 verified 4751- 0 position 8268- -508 covered 3534- 8214 EXPECTED_5' NO_OVERLAPS createUnitigs()-- tig 630 len 23142 first read 33853 with 1 placements - last read 396200 with 5 placements createUnitigs()-- read 33853 place 0 edgeTo tig 630 reads # 1 33855- 82859 verified 19- 5546 position 19- 5546 covered 0- 5419 SELF createUnitigs()-- read 396200 place 0 edgeTo tig 630 reads # 36 247650- 3733 verified 22885- 17411 position 23131- 17411 covered 249- 5684 SELF EXPECTED_5' Scan reads from #33 to #33 for high coordinate in verified region 15149-16409 Test read # 33 ident 58876 15149- 21700 against verified region 15149- 16409 Failed to find appropriate intersecting read. createUnitigs()-- read 396200 place 1 edgeTo tig 865 reads # 33 58876- 58876 verified 15149- 16409 position 10699- 16409 covered 4450- 5684 EXPECTED_5' NO_OVERLAPS Scan reads from #25 to #29 for high coordinate in verified region 10502-11570 Test read # 25 ident 534775 10502- 11554 against verified region 10502- 11570 - CANDIDATE hangs 3129 -1510 Test read # 26 ident 624946 10511- 11562 against verified region 10502- 11570 - CANDIDATE hangs 3144 -1502 Test read # 27 ident 294171 10520- 11559 against verified region 10502- 11570 - CANDIDATE hangs 3144 -1503 Test read # 28 ident 401172 10532- 11558 against verified region 10502- 11570 - CANDIDATE hangs 3161 -1504 Test read # 29 ident 264332 10534- 11570 against verified region 10502- 11570 Failed to find appropriate intersecting read. createUnitigs()-- read 396200 place 2 edgeTo tig 27997 reads # 25 534775- 264332 verified 10502- 11570 position 7371- 13065 covered 3129- 4182 EXPECTED_5' NO_OVERLAPS Scan reads from #1 to #4 for high coordinate in verified region 201-1705 Test read # 1 ident 410978 201- 6251 against verified region 201- 1705 Test read # 2 ident 502293 220- 5579 against verified region 201- 1705 Test read # 3 ident 474901 792- 4488 against verified region 201- 1705 Test read # 4 ident 618549 880- 5661 against verified region 201- 1705 Failed to find appropriate intersecting read. createUnitigs()-- read 396200 place 3 edgeTo tig 114064 reads # 1 410978- 618549 verified 201- 1705 position -4018- 1705 covered 4231- 5684 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #0 to #0 for high coordinate in verified region 0-1499 Test read # 0 ident 648465 0- 10565 against verified region 0- 1499 Failed to find appropriate intersecting read. createUnitigs()-- read 396200 place 4 edgeTo tig 114065 reads # 0 648465- 648465 verified 0- 1499 position -4239- 1499 covered 4239- 5684 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR createUnitigs()-- tig 632 len 41063 first read 40036 with 1 placements - last read 716976 with 1 placements createUnitigs()-- read 40036 place 0 edgeTo tig 632 reads # 1 40035- 492951 verified 16- 7072 position 9- 7072 covered 19- 7034 SELF EXPECTED_5' createUnitigs()-- read 716976 place 0 edgeTo tig 632 reads # 27 377366- 321617 verified 41017- 27028 position 41063- 27028 covered 49- 13994 SELF EXPECTED_5' createUnitigs()-- tig 640 len 23814 first read 62940 with 1 placements - last read 364443 with 1 placements createUnitigs()-- read 62940 place 0 edgeTo tig 640 reads # 1 594508- 165405 verified 193- 4904 position 3- 4904 covered 165- 4875 SELF EXPECTED_5' createUnitigs()-- read 364443 place 0 edgeTo tig 640 reads # 23 242259- 508093 verified 15081- 23796 position 15081- 23796 covered 0- 8681 SELF EXPECTED_3' createUnitigs()-- tig 641 len 17078 first read 143858 with 1 placements - last read 63181 with 2 placements createUnitigs()-- read 143858 place 0 edgeTo tig 641 reads # 1 476684- 170489 verified 1193- 8407 position 2- 8407 covered 1188- 8372 SELF EXPECTED_5' createUnitigs()-- read 63181 place 0 edgeTo tig 641 reads # 22 366078- 438485 verified 12554- 14442 position 12554- 15836 covered 0- 1630 SELF EXPECTED_3' createUnitigs()-- read 63181 place 1 edgeTo tig 641 reads # 23 366077- 484842 verified 13883- 16579 position 13883- 17167 covered 0- 2661 SELF EXPECTED_3' createUnitigs()-- tig 644 len 35400 first read 548705 with 1 placements - last read 90135 with 1 placements createUnitigs()-- read 548705 place 0 edgeTo tig 644 reads # 1 548708- 627188 verified 109- 5791 position -1- 5791 covered 111- 5752 SELF EXPECTED_5' createUnitigs()-- read 90135 place 0 edgeTo tig 644 reads # 40 686213- 121640 verified 31054- 35389 position 31054- 35396 covered 0- 4292 SELF EXPECTED_3' createUnitigs()-- tig 647 len 23425 first read 350899 with 1 placements - last read 95207 with 1 placements createUnitigs()-- read 350899 place 0 edgeTo tig 647 reads # 1 350898- 511154 verified 6749- 1430 position 6749- 3 covered 0- 5242 SELF EXPECTED_3' createUnitigs()-- read 95207 place 0 edgeTo tig 647 reads # 16 143653- 225010 verified 23416- 16747 position 23419- 16747 covered 0- 6653 SELF createUnitigs()-- tig 648 len 25537 first read 96199 with 1 placements - last read 545231 with 1 placements createUnitigs()-- read 96199 place 0 edgeTo tig 648 reads # 1 96201- 177426 verified 17- 9689 position 0- 9689 covered 8- 9657 SELF EXPECTED_5' createUnitigs()-- read 545231 place 0 edgeTo tig 648 reads # 24 657203- 3961 verified 24316- 22535 position 25535- 22535 covered 1239- 2967 SELF EXPECTED_5' createUnitigs()-- tig 653 len 7963 first read 632299 with 3 placements - last read 106942 with 3 placements createUnitigs()-- read 632299 place 0 edgeTo tig 653 reads # 1 405743- 458447 verified 5904- 188 position 5904- 2 covered 0- 5694 SELF EXPECTED_3' Scan reads from #2 to #11 for high coordinate in verified region 2603-4213 Test read # 2 ident 176446 699- 4213 against verified region 2603- 4213 Test read # 8 ident 544463 1230- 4125 against verified region 2603- 4213 - CANDIDATE hangs 4365 1370 - SAVED Test read # 11 ident 446460 1843- 4194 against verified region 2603- 4213 - CANDIDATE hangs 4299 771 - SAVED Found appropriate intersecting read. createUnitigs()-- read 632299 place 1 edgeTo tig 1362 reads # 2 176446- 446460 verified 4213- 2603 position 8494- 2603 covered 4286- 5879 BREAK at pos 4194 read 446460 isLow 0 sim 1.0000 Scan reads from #14 to #19 for low coordinate in verified region 7200-9017 Test read # 14 ident 213591 7200- 11175 against verified region 7200- 9017 Test read # 15 ident 144514 7398- 12245 against verified region 7200- 9017 - CANDIDATE hangs 4281 3202 - SAVED Test read # 17 ident 684371 8033- 11260 against verified region 7200- 9017 - CANDIDATE hangs 4909 2247 Test read # 18 ident 722838 8416- 11490 against verified region 7200- 9017 - CANDIDATE hangs 5309 2508 Test read # 19 ident 722839 8431- 11459 against verified region 7200- 9017 - CANDIDATE hangs 5306 2431 Found appropriate intersecting read. createUnitigs()-- read 632299 place 2 edgeTo tig 113139 reads # 14 213591- 722839 verified 7200- 9017 position 3120- 9017 covered 4073- 5879 BREAK at pos 7398 read 144514 isLow 1 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 106942 place 0 edgeTo tig 653 reads # 0 632299- 458447 verified 568- 7963 position 568- 7963 covered 0- 7346 SELF Scan reads from #2 to #11 for low coordinate in verified region 3154-4213 Test read # 2 ident 176446 699- 4213 against verified region 3154- 4213 Test read # 8 ident 544463 1230- 4125 against verified region 3154- 4213 Test read # 11 ident 446460 1843- 4194 against verified region 3154- 4213 Failed to find appropriate intersecting read. createUnitigs()-- read 106942 place 1 edgeTo tig 1362 reads # 2 176446- 446460 verified 3154- 4213 position 3154- 10529 covered 0- 1025 EXPECTED_3' NO_OVERLAPS Scan reads from #14 to #16 for high coordinate in verified region 7200-8469 Test read # 14 ident 213591 7200- 11175 against verified region 7200- 8469 Test read # 15 ident 144514 7398- 12245 against verified region 7200- 8469 Test read # 16 ident 18262 7450- 8762 against verified region 7200- 8469 Failed to find appropriate intersecting read. createUnitigs()-- read 106942 place 2 edgeTo tig 113139 reads # 14 213591- 18262 verified 8469- 7200 position 8469- 1089 covered 0- 1235 EXPECTED_3' NO_OVERLAPS createUnitigs()-- tig 658 len 36803 first read 118574 with 5 placements - last read 649855 with 1 placements createUnitigs()-- read 118574 place 0 edgeTo tig 658 reads # 1 118576- 628262 verified 21- 14552 position 21- 14552 covered 0- 14508 SELF Scan reads from #1 to #8 for low coordinate in verified region 1681-5575 Test read # 1 ident 39465 8- 4452 against verified region 1681- 5575 Test read # 2 ident 39460 14- 5293 against verified region 1681- 5575 Test read # 4 ident 112493 1119- 5562 against verified region 1681- 5575 Test read # 7 ident 522810 2200- 5575 against verified region 1681- 5575 - CANDIDATE hangs 10622 -518 Test read # 8 ident 111983 2234- 5315 against verified region 1681- 5575 - CANDIDATE hangs 10889 -555 Failed to find appropriate intersecting read. createUnitigs()-- read 118574 place 1 edgeTo tig 784 reads # 1 39465- 111983 verified 5575- 1681 position 16197- 1681 covered 10622- 14508 EXPECTED_5' NO_OVERLAPS Scan reads from #12 to #12 for low coordinate in verified region 14743-15269 Test read # 12 ident 664704 9160- 15269 against verified region 14743- 15269 Failed to find appropriate intersecting read. createUnitigs()-- read 118574 place 2 edgeTo tig 4057 reads # 12 664704- 664704 verified 15269- 14743 position 29257- 14743 covered 13988- 14508 EXPECTED_5' NO_OVERLAPS Scan reads from #5 to #9 for low coordinate in verified region 8129-8671 Test read # 5 ident 687739 1966- 8670 against verified region 8129- 8671 Test read # 6 ident 687740 1967- 8671 against verified region 8129- 8671 Test read # 7 ident 687737 1972- 8665 against verified region 8129- 8671 Test read # 8 ident 687738 1974- 8666 against verified region 8129- 8671 Test read # 9 ident 687736 1992- 8671 against verified region 8129- 8671 Failed to find appropriate intersecting read. createUnitigs()-- read 118574 place 3 edgeTo tig 21031 reads # 5 687739- 687736 verified 8671- 8129 position 22656- 8129 covered 13986- 14508 EXPECTED_5' NO_OVERLAPS NOT_SIMILAR Scan reads from #7 to #32 for low coordinate in verified region 1329-3030 Test read # 7 ident 66441 1329- 2721 against verified region 1329- 3030 Test read # 10 ident 210534 1473- 2926 against verified region 1329- 3030 - CANDIDATE hangs 5601 -7491 Test read # 13 ident 553245 1537- 3017 against verified region 1329- 3030 - CANDIDATE hangs 5535 -7511 Test read # 16 ident 465512 1597- 2998 against verified region 1329- 3030 - CANDIDATE hangs 5646 -7492 Test read # 32 ident 479841 1990- 3030 against verified region 1329- 3030 - CANDIDATE hangs 5599 -7888 Failed to find appropriate intersecting read. createUnitigs()-- read 118574 place 4 edgeTo tig 113380 reads # 7 66441- 479841 verified 3030- 1329 position 8544- -5990 covered 5535- 7017 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 649855 place 0 edgeTo tig 658 reads # 37 548369- 345027 verified 31360- 36779 position 31360- 36800 covered 0- 5398 SELF EXPECTED_3' createUnitigs()-- tig 661 len 19924 first read 138034 with 3 placements - last read 450767 with 1 placements createUnitigs()-- read 138034 place 0 edgeTo tig 661 reads # 1 138033- 235358 verified 7- 5131 position -5- 5131 covered 20- 5057 SELF EXPECTED_5' Scan reads from #41 to #46 for low coordinate in verified region 21665-23509 Test read # 41 ident 522061 21665- 25741 against verified region 21665- 23509 Test read # 43 ident 12210 22128- 27210 against verified region 21665- 23509 - CANDIDATE hangs -3694 -3725 - SAVED Test read # 46 ident 521897 22589- 27451 against verified region 21665- 23509 - CANDIDATE hangs -3961 -4187 Found appropriate intersecting read. createUnitigs()-- read 138034 place 1 edgeTo tig 3802 reads # 41 522061- 521897 verified 23509- 21665 position 23509- 18411 covered 0- 1821 BREAK at pos 22128 read 12210 isLow 1 sim 1.0000 Scan reads from #13 to #14 for low coordinate in verified region 10404-11925 Test read # 13 ident 527080 10404- 14687 against verified region 10404- 11925 Test read # 14 ident 521896 10802- 13978 against verified region 10404- 11925 - CANDIDATE hangs -2057 -3980 - SAVED Found appropriate intersecting read. createUnitigs()-- read 138034 place 2 edgeTo tig 9364 reads # 13 527080- 521896 verified 11925- 10404 position 11925- 6821 covered 0- 1473 BREAK at pos 10802 read 521896 isLow 1 sim 1.0000 createUnitigs()-- saving 2 breakpoints to master list. createUnitigs()-- read 450767 place 0 edgeTo tig 661 reads # 12 436325- 265720 verified 19660- 14829 position 19924- 14829 covered 268- 5064 SELF EXPECTED_5' createUnitigs()-- tig 664 len 33556 first read 651382 with 1 placements - last read 394869 with 1 placements createUnitigs()-- read 651382 place 0 edgeTo tig 664 reads # 1 244980- 549777 verified 6765- 1747 position 6765- 1 covered 0- 5017 SELF EXPECTED_3' createUnitigs()-- read 394869 place 0 edgeTo tig 664 reads # 43 660966- 158632 verified 27165- 33540 position 27165- 33540 covered 0- 6358 SELF createUnitigs()-- tig 665 len 40850 first read 38488 with 1 placements - last read 161406 with 1 placements createUnitigs()-- read 38488 place 0 edgeTo tig 665 reads # 1 266667- 579723 verified 7199- 1172 position 7199- 6 covered 0- 6030 SELF EXPECTED_3' createUnitigs()-- read 161406 place 0 edgeTo tig 665 reads # 32 627327- 143351 verified 32328- 39058 position 32328- 40850 covered 0- 6721 SELF EXPECTED_3' createUnitigs()-- tig 671 len 24171 first read 184434 with 1 placements - last read 413246 with 1 placements createUnitigs()-- read 184434 place 0 edgeTo tig 671 reads # 1 184433- 529621 verified 16- 5615 position 0- 5615 covered 0- 5603 SELF createUnitigs()-- read 413246 place 0 edgeTo tig 671 reads # 17 674264- 413243 verified 24162- 16517 position 24165- 16517 covered 0- 7623 SELF createUnitigs()-- tig 672 len 38965 first read 587281 with 4 placements - last read 188134 with 1 placements createUnitigs()-- read 587281 place 0 edgeTo tig 672 reads # 3 640311- 689789 verified 5642- 13657 position -5926- 13657 covered 11953- 19523 SELF EXPECTED_5' createUnitigs()-- read 587281 place 1 edgeTo tig 672 reads # 1 640313- 474322 verified 4656- 20258 position 2553- 22155 covered 0- 19523 SELF createUnitigs()-- read 587281 place 2 edgeTo tig 672 reads # 37 425689- 341744 verified 15668- 18672 position 14890- 34468 covered 0- 2923 SELF Scan reads from #882 to #883 for high coordinate in verified region 17721-21265 Test read # 882 ident 396559 17721- 20888 against verified region 17721- 21265 - CANDIDATE hangs 3760 -12593 Test read # 883 ident 40882 17806- 21265 against verified region 17721- 21265 Failed to find appropriate intersecting read. createUnitigs()-- read 587281 place 3 edgeTo tig 113709 reads # 882 396559- 40882 verified 17721- 21265 position 13960- 33480 covered 3760- 7309 EXPECTED_5' NO_OVERLAPS createUnitigs()-- read 188134 place 0 edgeTo tig 672 reads # 63 584812- 439313 verified 38936- 33486 position 38954- 33486 covered 0- 5466 SELF createUnitigs()-- ti