[WARNING] Couldn't find /home/sam/data/oly_BGI_scaffolds.qual... assuming there isn't a quality file for the reference 2017-11-14 09:41:34,844 [INFO] Running /home/shared/PBSuite_15.8.24//bin//Collection.py /home/sam/analyses/20171114_oly_pbjelly/Protocol.xml 2017-11-14 09:41:34,844 [INFO] Grabbing Filling Metrics 2017-11-14 09:41:34,845 [INFO] Number of Gaps Addressed 0 2017-11-14 09:41:34,845 [INFO] No Filling Metrics 0 2017-11-14 09:41:34,845 [INFO] Min Read Failed 0 2017-11-14 09:41:34,845 [INFO] Filled 0 2017-11-14 09:41:34,845 [INFO] NFilled 0 2017-11-14 09:41:34,845 [INFO] Single-End Reduced 0 2017-11-14 09:41:34,845 [INFO] Double-End Reduced 0 2017-11-14 09:41:34,845 [INFO] Overfilled 0 2017-11-14 09:41:34,845 [INFO] Gaps with trimmed edges 0 2017-11-14 09:41:34,845 [INFO] Loading Reference 2017-11-14 09:42:58,390 [INFO] Removing Poorly Supported Edges 2017-11-14 09:43:35,500 [INFO] PreFilter: 765755 subGraphs 2017-11-14 09:45:26,142 [INFO] PostFilter: 765755 subGraphs 2017-11-14 09:45:27,289 [INFO] Outputting new contigs 2017-11-14 09:45:27,289 [DEBUG] Contig 0 2017-11-14 09:45:27,297 [DEBUG] Moving from ref0264927e5 to ref0264927.0e3 (p=1) 2017-11-14 09:45:27,298 [DEBUG] contig 2017-11-14 09:45:27,298 [DEBUG] who? ref0264927e5 ref0264927.0e3 2017-11-14 09:45:27,298 [DEBUG] Grabbing contig between nodes ref0264927e5 & ref0264927.0e3 - [trim 0, 0] 2017-11-14 09:45:27,298 [DEBUG] contig 0 to 777 2017-11-14 09:45:27,298 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,298 [DEBUG] Moving from ref0264927.0e3 to ref0264927.1e5 (p=1) 2017-11-14 09:45:27,298 [DEBUG] unimproved gap 2017-11-14 09:45:27,298 [DEBUG] Moving from ref0264927.1e5 to ref0264927.1e3 (p=1) 2017-11-14 09:45:27,298 [DEBUG] contig 2017-11-14 09:45:27,298 [DEBUG] who? ref0264927.1e5 ref0264927.1e3 2017-11-14 09:45:27,298 [DEBUG] Grabbing contig between nodes ref0264927.1e5 & ref0264927.1e3 - [trim 0, 0] 2017-11-14 09:45:27,298 [DEBUG] contig 821 to 1259 2017-11-14 09:45:27,299 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,299 [DEBUG] Moving from ref0264927.1e3 to ref0264927.2e5 (p=1) 2017-11-14 09:45:27,299 [DEBUG] unimproved gap 2017-11-14 09:45:27,299 [DEBUG] Moving from ref0264927.2e5 to ref0264927.2e3 (p=1) 2017-11-14 09:45:27,299 [DEBUG] contig 2017-11-14 09:45:27,299 [DEBUG] who? ref0264927.2e5 ref0264927.2e3 2017-11-14 09:45:27,299 [DEBUG] Grabbing contig between nodes ref0264927.2e5 & ref0264927.2e3 - [trim 0, 0] 2017-11-14 09:45:27,299 [DEBUG] contig 1600 to 2776 2017-11-14 09:45:27,299 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,299 [DEBUG] Moving from ref0264927.2e3 to ref0264927.3e5 (p=1) 2017-11-14 09:45:27,299 [DEBUG] unimproved gap 2017-11-14 09:45:27,299 [DEBUG] Moving from ref0264927.3e5 to ref0264927.3e3 (p=1) 2017-11-14 09:45:27,299 [DEBUG] contig 2017-11-14 09:45:27,299 [DEBUG] who? ref0264927.3e5 ref0264927.3e3 2017-11-14 09:45:27,300 [DEBUG] Grabbing contig between nodes ref0264927.3e5 & ref0264927.3e3 - [trim 0, 0] 2017-11-14 09:45:27,300 [DEBUG] contig 2995 to 3268 2017-11-14 09:45:27,300 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,300 [DEBUG] Moving from ref0264927.3e3 to ref0264927.4e5 (p=1) 2017-11-14 09:45:27,300 [DEBUG] unimproved gap 2017-11-14 09:45:27,300 [DEBUG] Moving from ref0264927.4e5 to ref0264927.4e3 (p=1) 2017-11-14 09:45:27,300 [DEBUG] contig 2017-11-14 09:45:27,300 [DEBUG] who? ref0264927.4e5 ref0264927.4e3 2017-11-14 09:45:27,300 [DEBUG] Grabbing contig between nodes ref0264927.4e5 & ref0264927.4e3 - [trim 0, 0] 2017-11-14 09:45:27,300 [DEBUG] contig 3465 to 3749 2017-11-14 09:45:27,300 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,300 [DEBUG] Moving from ref0264927.4e3 to ref0264927.5e5 (p=1) 2017-11-14 09:45:27,301 [DEBUG] unimproved gap 2017-11-14 09:45:27,301 [DEBUG] Moving from ref0264927.5e5 to ref0264927.5e3 (p=1) 2017-11-14 09:45:27,301 [DEBUG] contig 2017-11-14 09:45:27,301 [DEBUG] who? ref0264927.5e5 ref0264927.5e3 2017-11-14 09:45:27,301 [DEBUG] Grabbing contig between nodes ref0264927.5e5 & ref0264927.5e3 - [trim 0, 0] 2017-11-14 09:45:27,301 [DEBUG] contig 3955 to 4473 2017-11-14 09:45:27,301 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,301 [DEBUG] Moving from ref0264927.5e3 to ref0264927.6e5 (p=1) 2017-11-14 09:45:27,301 [DEBUG] unimproved gap 2017-11-14 09:45:27,301 [DEBUG] Moving from ref0264927.6e5 to ref0264927.6e3 (p=1) 2017-11-14 09:45:27,301 [DEBUG] contig 2017-11-14 09:45:27,301 [DEBUG] who? ref0264927.6e5 ref0264927.6e3 2017-11-14 09:45:27,301 [DEBUG] Grabbing contig between nodes ref0264927.6e5 & ref0264927.6e3 - [trim 0, 0] 2017-11-14 09:45:27,302 [DEBUG] contig 4563 to 5333 2017-11-14 09:45:27,302 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,302 [DEBUG] Moving from ref0264927.6e3 to ref0264927.7e5 (p=1) 2017-11-14 09:45:27,302 [DEBUG] unimproved gap 2017-11-14 09:45:27,302 [DEBUG] Moving from ref0264927.7e5 to ref0264927.7e3 (p=1) 2017-11-14 09:45:27,302 [DEBUG] contig 2017-11-14 09:45:27,302 [DEBUG] who? ref0264927.7e5 ref0264927.7e3 2017-11-14 09:45:27,302 [DEBUG] Grabbing contig between nodes ref0264927.7e5 & ref0264927.7e3 - [trim 0, 0] 2017-11-14 09:45:27,302 [DEBUG] contig 5368 to 12292 2017-11-14 09:45:27,302 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,302 [DEBUG] Moving from ref0264927.7e3 to ref0264927.8e5 (p=1) 2017-11-14 09:45:27,302 [DEBUG] unimproved gap 2017-11-14 09:45:27,302 [DEBUG] Moving from ref0264927.8e5 to ref0264927.8e3 (p=1) 2017-11-14 09:45:27,303 [DEBUG] contig 2017-11-14 09:45:27,303 [DEBUG] who? ref0264927.8e5 ref0264927.8e3 2017-11-14 09:45:27,303 [DEBUG] Grabbing contig between nodes ref0264927.8e5 & ref0264927.8e3 - [trim 0, 0] 2017-11-14 09:45:27,303 [DEBUG] contig 12352 to 14473 2017-11-14 09:45:27,303 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,303 [DEBUG] Moving from ref0264927.8e3 to ref0264927.9e5 (p=1) 2017-11-14 09:45:27,303 [DEBUG] unimproved gap 2017-11-14 09:45:27,303 [DEBUG] Moving from ref0264927.9e5 to ref0264927.9e3 (p=1) 2017-11-14 09:45:27,303 [DEBUG] contig 2017-11-14 09:45:27,303 [DEBUG] who? ref0264927.9e5 ref0264927.9e3 2017-11-14 09:45:27,303 [DEBUG] Grabbing contig between nodes ref0264927.9e5 & ref0264927.9e3 - [trim 0, 0] 2017-11-14 09:45:27,303 [DEBUG] contig 14500 to 20092 2017-11-14 09:45:27,303 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,303 [DEBUG] Moving from ref0264927.9e3 to ref0264927.10e5 (p=1) 2017-11-14 09:45:27,304 [DEBUG] unimproved gap 2017-11-14 09:45:27,304 [DEBUG] Moving from ref0264927.10e5 to ref0264927.10e3 (p=1) 2017-11-14 09:45:27,304 [DEBUG] contig 2017-11-14 09:45:27,304 [DEBUG] who? ref0264927.10e5 ref0264927.10e3 2017-11-14 09:45:27,304 [DEBUG] Grabbing contig between nodes ref0264927.10e5 & ref0264927.10e3 - [trim 0, 0] 2017-11-14 09:45:27,304 [DEBUG] contig 20322 to 27556 2017-11-14 09:45:27,304 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,304 [DEBUG] Moving from ref0264927.10e3 to ref0264927.11e5 (p=1) 2017-11-14 09:45:27,304 [DEBUG] unimproved gap 2017-11-14 09:45:27,304 [DEBUG] Moving from ref0264927.11e5 to ref0264927.11e3 (p=1) 2017-11-14 09:45:27,304 [DEBUG] contig 2017-11-14 09:45:27,304 [DEBUG] who? ref0264927.11e5 ref0264927.11e3 2017-11-14 09:45:27,304 [DEBUG] Grabbing contig between nodes ref0264927.11e5 & ref0264927.11e3 - [trim 0, 0] 2017-11-14 09:45:27,305 [DEBUG] contig 27763 to 41280 2017-11-14 09:45:27,305 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,305 [DEBUG] Moving from ref0264927.11e3 to ref0264927.12e5 (p=1) 2017-11-14 09:45:27,305 [DEBUG] unimproved gap 2017-11-14 09:45:27,305 [DEBUG] Moving from ref0264927.12e5 to ref0264927.12e3 (p=1) 2017-11-14 09:45:27,305 [DEBUG] contig 2017-11-14 09:45:27,305 [DEBUG] who? ref0264927.12e5 ref0264927.12e3 2017-11-14 09:45:27,305 [DEBUG] Grabbing contig between nodes ref0264927.12e5 & ref0264927.12e3 - [trim 0, 0] 2017-11-14 09:45:27,305 [DEBUG] contig 41411 to 45645 2017-11-14 09:45:27,305 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,305 [DEBUG] Moving from ref0264927.12e3 to ref0264927.13e5 (p=1) 2017-11-14 09:45:27,305 [DEBUG] unimproved gap 2017-11-14 09:45:27,305 [DEBUG] Moving from ref0264927.13e5 to ref0264927.13e3 (p=1) 2017-11-14 09:45:27,306 [DEBUG] contig 2017-11-14 09:45:27,306 [DEBUG] who? ref0264927.13e5 ref0264927.13e3 2017-11-14 09:45:27,306 [DEBUG] Grabbing contig between nodes ref0264927.13e5 & ref0264927.13e3 - [trim 0, 0] 2017-11-14 09:45:27,306 [DEBUG] contig 45701 to 47480 2017-11-14 09:45:27,306 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,306 [DEBUG] Moving from ref0264927.13e3 to ref0264927.14e5 (p=1) 2017-11-14 09:45:27,306 [DEBUG] unimproved gap 2017-11-14 09:45:27,306 [DEBUG] Moving from ref0264927.14e5 to ref0264927.14e3 (p=1) 2017-11-14 09:45:27,306 [DEBUG] contig 2017-11-14 09:45:27,306 [DEBUG] who? ref0264927.14e5 ref0264927.14e3 2017-11-14 09:45:27,306 [DEBUG] Grabbing contig between nodes ref0264927.14e5 & ref0264927.14e3 - [trim 0, 0] 2017-11-14 09:45:27,306 [DEBUG] contig 47774 to 48789 2017-11-14 09:45:27,306 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,307 [DEBUG] Moving from ref0264927.14e3 to ref0264927.15e5 (p=1) 2017-11-14 09:45:27,307 [DEBUG] unimproved gap 2017-11-14 09:45:27,307 [DEBUG] Moving from ref0264927.15e5 to ref0264927.15e3 (p=1) 2017-11-14 09:45:27,307 [DEBUG] contig 2017-11-14 09:45:27,307 [DEBUG] who? ref0264927.15e5 ref0264927.15e3 2017-11-14 09:45:27,307 [DEBUG] Grabbing contig between nodes ref0264927.15e5 & ref0264927.15e3 - [trim 0, 0] 2017-11-14 09:45:27,307 [DEBUG] contig 49318 to 50119 2017-11-14 09:45:27,307 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,307 [DEBUG] Moving from ref0264927.15e3 to ref0264927.16e5 (p=1) 2017-11-14 09:45:27,307 [DEBUG] unimproved gap 2017-11-14 09:45:27,307 [DEBUG] Moving from ref0264927.16e5 to ref0264927.16e3 (p=1) 2017-11-14 09:45:27,307 [DEBUG] contig 2017-11-14 09:45:27,307 [DEBUG] who? ref0264927.16e5 ref0264927.16e3 2017-11-14 09:45:27,307 [DEBUG] Grabbing contig between nodes ref0264927.16e5 & ref0264927.16e3 - [trim 0, 0] 2017-11-14 09:45:27,308 [DEBUG] contig 50430 to 53466 2017-11-14 09:45:27,308 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,308 [DEBUG] Moving from ref0264927.16e3 to ref0264927.17e5 (p=1) 2017-11-14 09:45:27,308 [DEBUG] unimproved gap 2017-11-14 09:45:27,308 [DEBUG] Moving from ref0264927.17e5 to ref0264927.17e3 (p=1) 2017-11-14 09:45:27,308 [DEBUG] contig 2017-11-14 09:45:27,308 [DEBUG] who? ref0264927.17e5 ref0264927.17e3 2017-11-14 09:45:27,308 [DEBUG] Grabbing contig between nodes ref0264927.17e5 & ref0264927.17e3 - [trim 0, 0] 2017-11-14 09:45:27,308 [DEBUG] contig 53516 to 73682 2017-11-14 09:45:27,308 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,308 [DEBUG] Moving from ref0264927.17e3 to ref0264927.18e5 (p=1) 2017-11-14 09:45:27,308 [DEBUG] unimproved gap 2017-11-14 09:45:27,308 [DEBUG] Moving from ref0264927.18e5 to ref0264927.18e3 (p=1) 2017-11-14 09:45:27,309 [DEBUG] contig 2017-11-14 09:45:27,309 [DEBUG] who? ref0264927.18e5 ref0264927.18e3 2017-11-14 09:45:27,309 [DEBUG] Grabbing contig between nodes ref0264927.18e5 & ref0264927.18e3 - [trim 0, 0] 2017-11-14 09:45:27,309 [DEBUG] contig 73728 to 83863 2017-11-14 09:45:27,309 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,309 [DEBUG] Moving from ref0264927.18e3 to ref0264927.19e5 (p=1) 2017-11-14 09:45:27,309 [DEBUG] unimproved gap 2017-11-14 09:45:27,309 [DEBUG] Moving from ref0264927.19e5 to ref0264927.19e3 (p=1) 2017-11-14 09:45:27,309 [DEBUG] contig 2017-11-14 09:45:27,309 [DEBUG] who? ref0264927.19e5 ref0264927.19e3 2017-11-14 09:45:27,309 [DEBUG] Grabbing contig between nodes ref0264927.19e5 & ref0264927.19e3 - [trim 0, 0] 2017-11-14 09:45:27,309 [DEBUG] contig 83905 to 86527 2017-11-14 09:45:27,309 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,310 [DEBUG] Moving from ref0264927.19e3 to ref0264927.20e5 (p=1) 2017-11-14 09:45:27,310 [DEBUG] unimproved gap 2017-11-14 09:45:27,310 [DEBUG] Moving from ref0264927.20e5 to ref0264927.20e3 (p=1) 2017-11-14 09:45:27,310 [DEBUG] contig 2017-11-14 09:45:27,310 [DEBUG] who? ref0264927.20e5 ref0264927.20e3 2017-11-14 09:45:27,310 [DEBUG] Grabbing contig between nodes ref0264927.20e5 & ref0264927.20e3 - [trim 0, 0] 2017-11-14 09:45:27,310 [DEBUG] contig 86619 to 88184 2017-11-14 09:45:27,310 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,310 [DEBUG] Moving from ref0264927.20e3 to ref0264927.21e5 (p=1) 2017-11-14 09:45:27,310 [DEBUG] unimproved gap 2017-11-14 09:45:27,310 [DEBUG] Moving from ref0264927.21e5 to ref0264927.21e3 (p=1) 2017-11-14 09:45:27,310 [DEBUG] contig 2017-11-14 09:45:27,310 [DEBUG] who? ref0264927.21e5 ref0264927.21e3 2017-11-14 09:45:27,310 [DEBUG] Grabbing contig between nodes ref0264927.21e5 & ref0264927.21e3 - [trim 0, 0] 2017-11-14 09:45:27,311 [DEBUG] contig 88435 to 88895 2017-11-14 09:45:27,311 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,311 [DEBUG] Moving from ref0264927.21e3 to ref0264927.22e5 (p=1) 2017-11-14 09:45:27,311 [DEBUG] unimproved gap 2017-11-14 09:45:27,311 [DEBUG] Moving from ref0264927.22e5 to ref0264927.22e3 (p=1) 2017-11-14 09:45:27,311 [DEBUG] contig 2017-11-14 09:45:27,311 [DEBUG] who? ref0264927.22e5 ref0264927.22e3 2017-11-14 09:45:27,311 [DEBUG] Grabbing contig between nodes ref0264927.22e5 & ref0264927.22e3 - [trim 0, 0] 2017-11-14 09:45:27,311 [DEBUG] contig 89015 to 91857 2017-11-14 09:45:27,311 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,311 [DEBUG] Moving from ref0264927.22e3 to ref0264927.23e5 (p=1) 2017-11-14 09:45:27,311 [DEBUG] unimproved gap 2017-11-14 09:45:27,311 [DEBUG] Moving from ref0264927.23e5 to ref0264927.23e3 (p=1) 2017-11-14 09:45:27,312 [DEBUG] contig 2017-11-14 09:45:27,312 [DEBUG] who? ref0264927.23e5 ref0264927.23e3 2017-11-14 09:45:27,312 [DEBUG] Grabbing contig between nodes ref0264927.23e5 & ref0264927.23e3 - [trim 0, 0] 2017-11-14 09:45:27,312 [DEBUG] contig 92006 to 93219 2017-11-14 09:45:27,312 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,312 [DEBUG] Moving from ref0264927.23e3 to ref0264927.24e5 (p=1) 2017-11-14 09:45:27,312 [DEBUG] unimproved gap 2017-11-14 09:45:27,312 [DEBUG] Moving from ref0264927.24e5 to ref0264927.24e3 (p=1) 2017-11-14 09:45:27,312 [DEBUG] contig 2017-11-14 09:45:27,312 [DEBUG] who? ref0264927.24e5 ref0264927.24e3 2017-11-14 09:45:27,312 [DEBUG] Grabbing contig between nodes ref0264927.24e5 & ref0264927.24e3 - [trim 0, 0] 2017-11-14 09:45:27,312 [DEBUG] contig 93296 to 102273 2017-11-14 09:45:27,312 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,313 [DEBUG] Moving from ref0264927.24e3 to ref0264927.25e5 (p=1) 2017-11-14 09:45:27,313 [DEBUG] unimproved gap 2017-11-14 09:45:27,313 [DEBUG] Moving from ref0264927.25e5 to ref0264927.25e3 (p=1) 2017-11-14 09:45:27,313 [DEBUG] contig 2017-11-14 09:45:27,313 [DEBUG] who? ref0264927.25e5 ref0264927.25e3 2017-11-14 09:45:27,313 [DEBUG] Grabbing contig between nodes ref0264927.25e5 & ref0264927.25e3 - [trim 0, 0] 2017-11-14 09:45:27,313 [DEBUG] contig 102314 to 104038 2017-11-14 09:45:27,313 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,313 [DEBUG] Moving from ref0264927.25e3 to ref0264927.26e5 (p=1) 2017-11-14 09:45:27,313 [DEBUG] unimproved gap 2017-11-14 09:45:27,313 [DEBUG] Moving from ref0264927.26e5 to ref0264927.26e3 (p=1) 2017-11-14 09:45:27,313 [DEBUG] contig 2017-11-14 09:45:27,313 [DEBUG] who? ref0264927.26e5 ref0264927.26e3 2017-11-14 09:45:27,313 [DEBUG] Grabbing contig between nodes ref0264927.26e5 & ref0264927.26e3 - [trim 0, 0] 2017-11-14 09:45:27,314 [DEBUG] contig 104116 to 104161 2017-11-14 09:45:27,314 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,314 [DEBUG] Moving from ref0264927.26e3 to ref0264927.27e5 (p=1) 2017-11-14 09:45:27,314 [DEBUG] unimproved gap 2017-11-14 09:45:27,314 [DEBUG] Moving from ref0264927.27e5 to ref0264927.27e3 (p=1) 2017-11-14 09:45:27,314 [DEBUG] contig 2017-11-14 09:45:27,314 [DEBUG] who? ref0264927.27e5 ref0264927.27e3 2017-11-14 09:45:27,314 [DEBUG] Grabbing contig between nodes ref0264927.27e5 & ref0264927.27e3 - [trim 0, 0] 2017-11-14 09:45:27,314 [DEBUG] contig 104256 to 108660 2017-11-14 09:45:27,314 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,314 [DEBUG] Moving from ref0264927.27e3 to ref0264927.28e5 (p=1) 2017-11-14 09:45:27,314 [DEBUG] unimproved gap 2017-11-14 09:45:27,314 [DEBUG] Moving from ref0264927.28e5 to ref0264927.28e3 (p=1) 2017-11-14 09:45:27,315 [DEBUG] contig 2017-11-14 09:45:27,315 [DEBUG] who? ref0264927.28e5 ref0264927.28e3 2017-11-14 09:45:27,315 [DEBUG] Grabbing contig between nodes ref0264927.28e5 & ref0264927.28e3 - [trim 0, 0] 2017-11-14 09:45:27,315 [DEBUG] contig 109050 to 111865 2017-11-14 09:45:27,315 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,315 [DEBUG] Moving from ref0264927.28e3 to ref0264927.29e5 (p=1) 2017-11-14 09:45:27,315 [DEBUG] unimproved gap 2017-11-14 09:45:27,315 [DEBUG] Moving from ref0264927.29e5 to ref0264927.29e3 (p=1) 2017-11-14 09:45:27,315 [DEBUG] contig 2017-11-14 09:45:27,315 [DEBUG] who? ref0264927.29e5 ref0264927.29e3 2017-11-14 09:45:27,315 [DEBUG] Grabbing contig between nodes ref0264927.29e5 & ref0264927.29e3 - [trim 0, 0] 2017-11-14 09:45:27,315 [DEBUG] contig 112009 to 113370 2017-11-14 09:45:27,315 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,316 [DEBUG] Moving from ref0264927.29e3 to ref0264927.30e5 (p=1) 2017-11-14 09:45:27,316 [DEBUG] unimproved gap 2017-11-14 09:45:27,316 [DEBUG] Moving from ref0264927.30e5 to ref0264927.30e3 (p=1) 2017-11-14 09:45:27,316 [DEBUG] contig 2017-11-14 09:45:27,316 [DEBUG] who? ref0264927.30e5 ref0264927.30e3 2017-11-14 09:45:27,316 [DEBUG] Grabbing contig between nodes ref0264927.30e5 & ref0264927.30e3 - [trim 0, 0] 2017-11-14 09:45:27,316 [DEBUG] contig 113885 to 115949 2017-11-14 09:45:27,316 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,316 [DEBUG] Moving from ref0264927.30e3 to ref0264927.31e5 (p=1) 2017-11-14 09:45:27,316 [DEBUG] unimproved gap 2017-11-14 09:45:27,316 [DEBUG] Moving from ref0264927.31e5 to ref0264927.31e3 (p=1) 2017-11-14 09:45:27,316 [DEBUG] contig 2017-11-14 09:45:27,316 [DEBUG] who? ref0264927.31e5 ref0264927.31e3 2017-11-14 09:45:27,317 [DEBUG] Grabbing contig between nodes ref0264927.31e5 & ref0264927.31e3 - [trim 0, 0] 2017-11-14 09:45:27,317 [DEBUG] contig 116381 to 118169 2017-11-14 09:45:27,317 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,317 [DEBUG] Moving from ref0264927.31e3 to ref0264927.32e5 (p=1) 2017-11-14 09:45:27,317 [DEBUG] unimproved gap 2017-11-14 09:45:27,317 [DEBUG] Moving from ref0264927.32e5 to ref0264927.32e3 (p=1) 2017-11-14 09:45:27,317 [DEBUG] contig 2017-11-14 09:45:27,317 [DEBUG] who? ref0264927.32e5 ref0264927.32e3 2017-11-14 09:45:27,317 [DEBUG] Grabbing contig between nodes ref0264927.32e5 & ref0264927.32e3 - [trim 0, 0] 2017-11-14 09:45:27,317 [DEBUG] contig 118778 to 119360 2017-11-14 09:45:27,317 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,317 [DEBUG] Moving from ref0264927.32e3 to ref0264927.33e5 (p=1) 2017-11-14 09:45:27,317 [DEBUG] unimproved gap 2017-11-14 09:45:27,317 [DEBUG] Moving from ref0264927.33e5 to ref0264927.33e3 (p=1) 2017-11-14 09:45:27,318 [DEBUG] contig 2017-11-14 09:45:27,318 [DEBUG] who? ref0264927.33e5 ref0264927.33e3 2017-11-14 09:45:27,318 [DEBUG] Grabbing contig between nodes ref0264927.33e5 & ref0264927.33e3 - [trim 0, 0] 2017-11-14 09:45:27,318 [DEBUG] contig 119718 to 121462 2017-11-14 09:45:27,318 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,318 [DEBUG] Moving from ref0264927.33e3 to ref0264927.34e5 (p=1) 2017-11-14 09:45:27,318 [DEBUG] unimproved gap 2017-11-14 09:45:27,318 [DEBUG] Moving from ref0264927.34e5 to ref0264927.34e3 (p=1) 2017-11-14 09:45:27,318 [DEBUG] contig 2017-11-14 09:45:27,318 [DEBUG] who? ref0264927.34e5 ref0264927.34e3 2017-11-14 09:45:27,318 [DEBUG] Grabbing contig between nodes ref0264927.34e5 & ref0264927.34e3 - [trim 0, 0] 2017-11-14 09:45:27,318 [DEBUG] contig 122044 to 128551 2017-11-14 09:45:27,318 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,319 [DEBUG] Moving from ref0264927.34e3 to ref0264927.35e5 (p=1) 2017-11-14 09:45:27,319 [DEBUG] unimproved gap 2017-11-14 09:45:27,319 [DEBUG] Moving from ref0264927.35e5 to ref0264927.35e3 (p=1) 2017-11-14 09:45:27,319 [DEBUG] contig 2017-11-14 09:45:27,319 [DEBUG] who? ref0264927.35e5 ref0264927.35e3 2017-11-14 09:45:27,319 [DEBUG] Grabbing contig between nodes ref0264927.35e5 & ref0264927.35e3 - [trim 0, 0] 2017-11-14 09:45:27,319 [DEBUG] contig 128634 to 128686 2017-11-14 09:45:27,319 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,319 [DEBUG] Moving from ref0264927.35e3 to ref0264927.36e5 (p=1) 2017-11-14 09:45:27,319 [DEBUG] unimproved gap 2017-11-14 09:45:27,319 [DEBUG] Moving from ref0264927.36e5 to ref0264927.36e3 (p=1) 2017-11-14 09:45:27,319 [DEBUG] contig 2017-11-14 09:45:27,319 [DEBUG] who? ref0264927.36e5 ref0264927.36e3 2017-11-14 09:45:27,319 [DEBUG] Grabbing contig between nodes ref0264927.36e5 & ref0264927.36e3 - [trim 0, 0] 2017-11-14 09:45:27,320 [DEBUG] contig 128747 to 128779 2017-11-14 09:45:27,320 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,320 [DEBUG] Moving from ref0264927.36e3 to ref0264927.37e5 (p=1) 2017-11-14 09:45:27,320 [DEBUG] unimproved gap 2017-11-14 09:45:27,320 [DEBUG] Moving from ref0264927.37e5 to ref0264927.37e3 (p=1) 2017-11-14 09:45:27,320 [DEBUG] contig 2017-11-14 09:45:27,320 [DEBUG] who? ref0264927.37e5 ref0264927.37e3 2017-11-14 09:45:27,320 [DEBUG] Grabbing contig between nodes ref0264927.37e5 & ref0264927.37e3 - [trim 0, 0] 2017-11-14 09:45:27,320 [DEBUG] contig 129061 to 129149 2017-11-14 09:45:27,320 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,320 [DEBUG] Moving from ref0264927.37e3 to ref0264927.38e5 (p=1) 2017-11-14 09:45:27,320 [DEBUG] unimproved gap 2017-11-14 09:45:27,320 [DEBUG] Moving from ref0264927.38e5 to ref0264927.38e3 (p=1) 2017-11-14 09:45:27,321 [DEBUG] contig 2017-11-14 09:45:27,321 [DEBUG] who? ref0264927.38e5 ref0264927.38e3 2017-11-14 09:45:27,321 [DEBUG] Grabbing contig between nodes ref0264927.38e5 & ref0264927.38e3 - [trim 0, 0] 2017-11-14 09:45:27,321 [DEBUG] contig 129424 to 129467 2017-11-14 09:45:27,321 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,321 [DEBUG] Moving from ref0264927.38e3 to ref0264927.39e5 (p=1) 2017-11-14 09:45:27,321 [DEBUG] unimproved gap 2017-11-14 09:45:27,321 [DEBUG] Moving from ref0264927.39e5 to ref0264927e3 (p=1) 2017-11-14 09:45:27,321 [DEBUG] contig 2017-11-14 09:45:27,321 [DEBUG] who? ref0264927.39e5 ref0264927e3 2017-11-14 09:45:27,321 [DEBUG] Grabbing contig between nodes ref0264927.39e5 & ref0264927e3 - [trim 0, 0] 2017-11-14 09:45:27,321 [DEBUG] contig 130018 to 130073 2017-11-14 09:45:27,321 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,322 [DEBUG] Contig 1 2017-11-14 09:45:27,327 [DEBUG] Moving from ref0262207e5 to ref0262207.0e3 (p=1) 2017-11-14 09:45:27,327 [DEBUG] contig 2017-11-14 09:45:27,327 [DEBUG] who? ref0262207e5 ref0262207.0e3 2017-11-14 09:45:27,327 [DEBUG] Grabbing contig between nodes ref0262207e5 & ref0262207.0e3 - [trim 0, 0] 2017-11-14 09:45:27,327 [DEBUG] contig 0 to 4589 2017-11-14 09:45:27,327 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,327 [DEBUG] Moving from ref0262207.0e3 to ref0262207.1e5 (p=1) 2017-11-14 09:45:27,328 [DEBUG] unimproved gap 2017-11-14 09:45:27,328 [DEBUG] Moving from ref0262207.1e5 to ref0262207.1e3 (p=1) 2017-11-14 09:45:27,328 [DEBUG] contig 2017-11-14 09:45:27,328 [DEBUG] who? ref0262207.1e5 ref0262207.1e3 2017-11-14 09:45:27,328 [DEBUG] Grabbing contig between nodes ref0262207.1e5 & ref0262207.1e3 - [trim 0, 0] 2017-11-14 09:45:27,328 [DEBUG] contig 4750 to 5524 2017-11-14 09:45:27,328 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,328 [DEBUG] Moving from ref0262207.1e3 to ref0262207.2e5 (p=1) 2017-11-14 09:45:27,328 [DEBUG] unimproved gap 2017-11-14 09:45:27,328 [DEBUG] Moving from ref0262207.2e5 to ref0262207.2e3 (p=1) 2017-11-14 09:45:27,328 [DEBUG] contig 2017-11-14 09:45:27,328 [DEBUG] who? ref0262207.2e5 ref0262207.2e3 2017-11-14 09:45:27,328 [DEBUG] Grabbing contig between nodes ref0262207.2e5 & ref0262207.2e3 - [trim 0, 0] 2017-11-14 09:45:27,329 [DEBUG] contig 6061 to 7933 2017-11-14 09:45:27,329 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,329 [DEBUG] Moving from ref0262207.2e3 to ref0262207.3e5 (p=1) 2017-11-14 09:45:27,329 [DEBUG] unimproved gap 2017-11-14 09:45:27,329 [DEBUG] Moving from ref0262207.3e5 to ref0262207.3e3 (p=1) 2017-11-14 09:45:27,329 [DEBUG] contig 2017-11-14 09:45:27,329 [DEBUG] who? ref0262207.3e5 ref0262207.3e3 2017-11-14 09:45:27,329 [DEBUG] Grabbing contig between nodes ref0262207.3e5 & ref0262207.3e3 - [trim 0, 0] 2017-11-14 09:45:27,329 [DEBUG] contig 8265 to 8351 2017-11-14 09:45:27,329 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,329 [DEBUG] Moving from ref0262207.3e3 to ref0262207.4e5 (p=1) 2017-11-14 09:45:27,329 [DEBUG] unimproved gap 2017-11-14 09:45:27,329 [DEBUG] Moving from ref0262207.4e5 to ref0262207.4e3 (p=1) 2017-11-14 09:45:27,329 [DEBUG] contig 2017-11-14 09:45:27,330 [DEBUG] who? ref0262207.4e5 ref0262207.4e3 2017-11-14 09:45:27,330 [DEBUG] Grabbing contig between nodes ref0262207.4e5 & ref0262207.4e3 - [trim 0, 0] 2017-11-14 09:45:27,330 [DEBUG] contig 8381 to 12534 2017-11-14 09:45:27,330 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,330 [DEBUG] Moving from ref0262207.4e3 to ref0262207.5e5 (p=1) 2017-11-14 09:45:27,330 [DEBUG] unimproved gap 2017-11-14 09:45:27,330 [DEBUG] Moving from ref0262207.5e5 to ref0262207.5e3 (p=1) 2017-11-14 09:45:27,330 [DEBUG] contig 2017-11-14 09:45:27,330 [DEBUG] who? ref0262207.5e5 ref0262207.5e3 2017-11-14 09:45:27,330 [DEBUG] Grabbing contig between nodes ref0262207.5e5 & ref0262207.5e3 - [trim 0, 0] 2017-11-14 09:45:27,330 [DEBUG] contig 12790 to 16226 2017-11-14 09:45:27,330 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,330 [DEBUG] Moving from ref0262207.5e3 to ref0262207.6e5 (p=1) 2017-11-14 09:45:27,331 [DEBUG] unimproved gap 2017-11-14 09:45:27,331 [DEBUG] Moving from ref0262207.6e5 to ref0262207.6e3 (p=1) 2017-11-14 09:45:27,331 [DEBUG] contig 2017-11-14 09:45:27,331 [DEBUG] who? ref0262207.6e5 ref0262207.6e3 2017-11-14 09:45:27,331 [DEBUG] Grabbing contig between nodes ref0262207.6e5 & ref0262207.6e3 - [trim 0, 0] 2017-11-14 09:45:27,331 [DEBUG] contig 16427 to 18169 2017-11-14 09:45:27,331 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,331 [DEBUG] Moving from ref0262207.6e3 to ref0262207.7e5 (p=1) 2017-11-14 09:45:27,331 [DEBUG] unimproved gap 2017-11-14 09:45:27,331 [DEBUG] Moving from ref0262207.7e5 to ref0262207.7e3 (p=1) 2017-11-14 09:45:27,331 [DEBUG] contig 2017-11-14 09:45:27,331 [DEBUG] who? ref0262207.7e5 ref0262207.7e3 2017-11-14 09:45:27,331 [DEBUG] Grabbing contig between nodes ref0262207.7e5 & ref0262207.7e3 - [trim 0, 0] 2017-11-14 09:45:27,332 [DEBUG] contig 18361 to 19982 2017-11-14 09:45:27,332 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,332 [DEBUG] Moving from ref0262207.7e3 to ref0262207.8e5 (p=1) 2017-11-14 09:45:27,332 [DEBUG] unimproved gap 2017-11-14 09:45:27,332 [DEBUG] Moving from ref0262207.8e5 to ref0262207.8e3 (p=1) 2017-11-14 09:45:27,332 [DEBUG] contig 2017-11-14 09:45:27,332 [DEBUG] who? ref0262207.8e5 ref0262207.8e3 2017-11-14 09:45:27,332 [DEBUG] Grabbing contig between nodes ref0262207.8e5 & ref0262207.8e3 - [trim 0, 0] 2017-11-14 09:45:27,332 [DEBUG] contig 20083 to 20723 2017-11-14 09:45:27,332 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,332 [DEBUG] Moving from ref0262207.8e3 to ref0262207.9e5 (p=1) 2017-11-14 09:45:27,332 [DEBUG] unimproved gap 2017-11-14 09:45:27,332 [DEBUG] Moving from ref0262207.9e5 to ref0262207.9e3 (p=1) 2017-11-14 09:45:27,332 [DEBUG] contig 2017-11-14 09:45:27,333 [DEBUG] who? ref0262207.9e5 ref0262207.9e3 2017-11-14 09:45:27,333 [DEBUG] Grabbing contig between nodes ref0262207.9e5 & ref0262207.9e3 - [trim 0, 0] 2017-11-14 09:45:27,333 [DEBUG] contig 21292 to 21414 2017-11-14 09:45:27,333 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,333 [DEBUG] Moving from ref0262207.9e3 to ref0262207.10e5 (p=1) 2017-11-14 09:45:27,333 [DEBUG] unimproved gap 2017-11-14 09:45:27,333 [DEBUG] Moving from ref0262207.10e5 to ref0262207.10e3 (p=1) 2017-11-14 09:45:27,333 [DEBUG] contig 2017-11-14 09:45:27,333 [DEBUG] who? ref0262207.10e5 ref0262207.10e3 2017-11-14 09:45:27,333 [DEBUG] Grabbing contig between nodes ref0262207.10e5 & ref0262207.10e3 - [trim 0, 0] 2017-11-14 09:45:27,333 [DEBUG] contig 21774 to 22207 2017-11-14 09:45:27,333 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,333 [DEBUG] Moving from ref0262207.10e3 to ref0262207.11e5 (p=1) 2017-11-14 09:45:27,334 [DEBUG] unimproved gap 2017-11-14 09:45:27,334 [DEBUG] Moving from ref0262207.11e5 to ref0262207.11e3 (p=1) 2017-11-14 09:45:27,334 [DEBUG] contig 2017-11-14 09:45:27,334 [DEBUG] who? ref0262207.11e5 ref0262207.11e3 2017-11-14 09:45:27,334 [DEBUG] Grabbing contig between nodes ref0262207.11e5 & ref0262207.11e3 - [trim 0, 0] 2017-11-14 09:45:27,334 [DEBUG] contig 22356 to 22559 2017-11-14 09:45:27,334 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,334 [DEBUG] Moving from ref0262207.11e3 to ref0262207.12e5 (p=1) 2017-11-14 09:45:27,334 [DEBUG] unimproved gap 2017-11-14 09:45:27,334 [DEBUG] Moving from ref0262207.12e5 to ref0262207.12e3 (p=1) 2017-11-14 09:45:27,334 [DEBUG] contig 2017-11-14 09:45:27,334 [DEBUG] who? ref0262207.12e5 ref0262207.12e3 2017-11-14 09:45:27,334 [DEBUG] Grabbing contig between nodes ref0262207.12e5 & ref0262207.12e3 - [trim 0, 0] 2017-11-14 09:45:27,334 [DEBUG] contig 22767 to 22816 2017-11-14 09:45:27,335 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,335 [DEBUG] Moving from ref0262207.12e3 to ref0262207.13e5 (p=1) 2017-11-14 09:45:27,335 [DEBUG] unimproved gap 2017-11-14 09:45:27,335 [DEBUG] Moving from ref0262207.13e5 to ref0262207.13e3 (p=1) 2017-11-14 09:45:27,335 [DEBUG] contig 2017-11-14 09:45:27,335 [DEBUG] who? ref0262207.13e5 ref0262207.13e3 2017-11-14 09:45:27,335 [DEBUG] Grabbing contig between nodes ref0262207.13e5 & ref0262207.13e3 - [trim 0, 0] 2017-11-14 09:45:27,335 [DEBUG] contig 23139 to 23558 2017-11-14 09:45:27,335 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,335 [DEBUG] Moving from ref0262207.13e3 to ref0262207.14e5 (p=1) 2017-11-14 09:45:27,335 [DEBUG] unimproved gap 2017-11-14 09:45:27,335 [DEBUG] Moving from ref0262207.14e5 to ref0262207.14e3 (p=1) 2017-11-14 09:45:27,335 [DEBUG] contig 2017-11-14 09:45:27,336 [DEBUG] who? ref0262207.14e5 ref0262207.14e3 2017-11-14 09:45:27,336 [DEBUG] Grabbing contig between nodes ref0262207.14e5 & ref0262207.14e3 - [trim 0, 0] 2017-11-14 09:45:27,336 [DEBUG] contig 23973 to 24033 2017-11-14 09:45:27,336 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,336 [DEBUG] Moving from ref0262207.14e3 to ref0262207.15e5 (p=1) 2017-11-14 09:45:27,336 [DEBUG] unimproved gap 2017-11-14 09:45:27,336 [DEBUG] Moving from ref0262207.15e5 to ref0262207.15e3 (p=1) 2017-11-14 09:45:27,336 [DEBUG] contig 2017-11-14 09:45:27,336 [DEBUG] who? ref0262207.15e5 ref0262207.15e3 2017-11-14 09:45:27,336 [DEBUG] Grabbing contig between nodes ref0262207.15e5 & ref0262207.15e3 - [trim 0, 0] 2017-11-14 09:45:27,336 [DEBUG] contig 24121 to 24407 2017-11-14 09:45:27,336 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,336 [DEBUG] Moving from ref0262207.15e3 to ref0262207.16e5 (p=1) 2017-11-14 09:45:27,336 [DEBUG] unimproved gap 2017-11-14 09:45:27,337 [DEBUG] Moving from ref0262207.16e5 to ref0262207.16e3 (p=1) 2017-11-14 09:45:27,337 [DEBUG] contig 2017-11-14 09:45:27,337 [DEBUG] who? ref0262207.16e5 ref0262207.16e3 2017-11-14 09:45:27,337 [DEBUG] Grabbing contig between nodes ref0262207.16e5 & ref0262207.16e3 - [trim 0, 0] 2017-11-14 09:45:27,337 [DEBUG] contig 24540 to 25241 2017-11-14 09:45:27,337 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,337 [DEBUG] Moving from ref0262207.16e3 to ref0262207.17e5 (p=1) 2017-11-14 09:45:27,337 [DEBUG] unimproved gap 2017-11-14 09:45:27,337 [DEBUG] Moving from ref0262207.17e5 to ref0262207.17e3 (p=1) 2017-11-14 09:45:27,337 [DEBUG] contig 2017-11-14 09:45:27,337 [DEBUG] who? ref0262207.17e5 ref0262207.17e3 2017-11-14 09:45:27,337 [DEBUG] Grabbing contig between nodes ref0262207.17e5 & ref0262207.17e3 - [trim 0, 0] 2017-11-14 09:45:27,337 [DEBUG] contig 25552 to 27271 2017-11-14 09:45:27,338 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,338 [DEBUG] Moving from ref0262207.17e3 to ref0262207.18e5 (p=1) 2017-11-14 09:45:27,338 [DEBUG] unimproved gap 2017-11-14 09:45:27,338 [DEBUG] Moving from ref0262207.18e5 to ref0262207.18e3 (p=1) 2017-11-14 09:45:27,338 [DEBUG] contig 2017-11-14 09:45:27,338 [DEBUG] who? ref0262207.18e5 ref0262207.18e3 2017-11-14 09:45:27,338 [DEBUG] Grabbing contig between nodes ref0262207.18e5 & ref0262207.18e3 - [trim 0, 0] 2017-11-14 09:45:27,338 [DEBUG] contig 27585 to 28206 2017-11-14 09:45:27,338 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,338 [DEBUG] Moving from ref0262207.18e3 to ref0262207.19e5 (p=1) 2017-11-14 09:45:27,338 [DEBUG] unimproved gap 2017-11-14 09:45:27,338 [DEBUG] Moving from ref0262207.19e5 to ref0262207.19e3 (p=1) 2017-11-14 09:45:27,338 [DEBUG] contig 2017-11-14 09:45:27,338 [DEBUG] who? ref0262207.19e5 ref0262207.19e3 2017-11-14 09:45:27,339 [DEBUG] Grabbing contig between nodes ref0262207.19e5 & ref0262207.19e3 - [trim 0, 0] 2017-11-14 09:45:27,339 [DEBUG] contig 28297 to 32216 2017-11-14 09:45:27,339 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,339 [DEBUG] Moving from ref0262207.19e3 to ref0262207.20e5 (p=1) 2017-11-14 09:45:27,339 [DEBUG] unimproved gap 2017-11-14 09:45:27,339 [DEBUG] Moving from ref0262207.20e5 to ref0262207.20e3 (p=1) 2017-11-14 09:45:27,339 [DEBUG] contig 2017-11-14 09:45:27,339 [DEBUG] who? ref0262207.20e5 ref0262207.20e3 2017-11-14 09:45:27,339 [DEBUG] Grabbing contig between nodes ref0262207.20e5 & ref0262207.20e3 - [trim 0, 0] 2017-11-14 09:45:27,339 [DEBUG] contig 32479 to 33928 2017-11-14 09:45:27,339 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,339 [DEBUG] Moving from ref0262207.20e3 to ref0262207.21e5 (p=1) 2017-11-14 09:45:27,339 [DEBUG] unimproved gap 2017-11-14 09:45:27,340 [DEBUG] Moving from ref0262207.21e5 to ref0262207.21e3 (p=1) 2017-11-14 09:45:27,340 [DEBUG] contig 2017-11-14 09:45:27,340 [DEBUG] who? ref0262207.21e5 ref0262207.21e3 2017-11-14 09:45:27,340 [DEBUG] Grabbing contig between nodes ref0262207.21e5 & ref0262207.21e3 - [trim 0, 0] 2017-11-14 09:45:27,340 [DEBUG] contig 34086 to 34523 2017-11-14 09:45:27,340 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,340 [DEBUG] Moving from ref0262207.21e3 to ref0262207.22e5 (p=1) 2017-11-14 09:45:27,340 [DEBUG] unimproved gap 2017-11-14 09:45:27,340 [DEBUG] Moving from ref0262207.22e5 to ref0262207.22e3 (p=1) 2017-11-14 09:45:27,340 [DEBUG] contig 2017-11-14 09:45:27,340 [DEBUG] who? ref0262207.22e5 ref0262207.22e3 2017-11-14 09:45:27,340 [DEBUG] Grabbing contig between nodes ref0262207.22e5 & ref0262207.22e3 - [trim 0, 0] 2017-11-14 09:45:27,340 [DEBUG] contig 34718 to 34899 2017-11-14 09:45:27,341 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,341 [DEBUG] Moving from ref0262207.22e3 to ref0262207.23e5 (p=1) 2017-11-14 09:45:27,341 [DEBUG] unimproved gap 2017-11-14 09:45:27,341 [DEBUG] Moving from ref0262207.23e5 to ref0262207.23e3 (p=1) 2017-11-14 09:45:27,341 [DEBUG] contig 2017-11-14 09:45:27,341 [DEBUG] who? ref0262207.23e5 ref0262207.23e3 2017-11-14 09:45:27,341 [DEBUG] Grabbing contig between nodes ref0262207.23e5 & ref0262207.23e3 - [trim 0, 0] 2017-11-14 09:45:27,341 [DEBUG] contig 35278 to 40871 2017-11-14 09:45:27,341 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,341 [DEBUG] Moving from ref0262207.23e3 to ref0262207.24e5 (p=1) 2017-11-14 09:45:27,341 [DEBUG] unimproved gap 2017-11-14 09:45:27,341 [DEBUG] Moving from ref0262207.24e5 to ref0262207.24e3 (p=1) 2017-11-14 09:45:27,341 [DEBUG] contig 2017-11-14 09:45:27,341 [DEBUG] who? ref0262207.24e5 ref0262207.24e3 2017-11-14 09:45:27,342 [DEBUG] Grabbing contig between nodes ref0262207.24e5 & ref0262207.24e3 - [trim 0, 0] 2017-11-14 09:45:27,342 [DEBUG] contig 40951 to 41146 2017-11-14 09:45:27,342 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,342 [DEBUG] Moving from ref0262207.24e3 to ref0262207.25e5 (p=1) 2017-11-14 09:45:27,342 [DEBUG] unimproved gap 2017-11-14 09:45:27,342 [DEBUG] Moving from ref0262207.25e5 to ref0262207.25e3 (p=1) 2017-11-14 09:45:27,342 [DEBUG] contig 2017-11-14 09:45:27,342 [DEBUG] who? ref0262207.25e5 ref0262207.25e3 2017-11-14 09:45:27,342 [DEBUG] Grabbing contig between nodes ref0262207.25e5 & ref0262207.25e3 - [trim 0, 0] 2017-11-14 09:45:27,342 [DEBUG] contig 41298 to 45243 2017-11-14 09:45:27,342 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,342 [DEBUG] Moving from ref0262207.25e3 to ref0262207.26e5 (p=1) 2017-11-14 09:45:27,342 [DEBUG] unimproved gap 2017-11-14 09:45:27,343 [DEBUG] Moving from ref0262207.26e5 to ref0262207.26e3 (p=1) 2017-11-14 09:45:27,343 [DEBUG] contig 2017-11-14 09:45:27,343 [DEBUG] who? ref0262207.26e5 ref0262207.26e3 2017-11-14 09:45:27,343 [DEBUG] Grabbing contig between nodes ref0262207.26e5 & ref0262207.26e3 - [trim 0, 0] 2017-11-14 09:45:27,343 [DEBUG] contig 45270 to 45384 2017-11-14 09:45:27,343 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,343 [DEBUG] Moving from ref0262207.26e3 to ref0262207.27e5 (p=1) 2017-11-14 09:45:27,343 [DEBUG] unimproved gap 2017-11-14 09:45:27,343 [DEBUG] Moving from ref0262207.27e5 to ref0262207.27e3 (p=1) 2017-11-14 09:45:27,343 [DEBUG] contig 2017-11-14 09:45:27,343 [DEBUG] who? ref0262207.27e5 ref0262207.27e3 2017-11-14 09:45:27,343 [DEBUG] Grabbing contig between nodes ref0262207.27e5 & ref0262207.27e3 - [trim 0, 0] 2017-11-14 09:45:27,343 [DEBUG] contig 45412 to 46148 2017-11-14 09:45:27,343 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,344 [DEBUG] Moving from ref0262207.27e3 to ref0262207.28e5 (p=1) 2017-11-14 09:45:27,344 [DEBUG] unimproved gap 2017-11-14 09:45:27,344 [DEBUG] Moving from ref0262207.28e5 to ref0262207.28e3 (p=1) 2017-11-14 09:45:27,344 [DEBUG] contig 2017-11-14 09:45:27,344 [DEBUG] who? ref0262207.28e5 ref0262207.28e3 2017-11-14 09:45:27,344 [DEBUG] Grabbing contig between nodes ref0262207.28e5 & ref0262207.28e3 - [trim 0, 0] 2017-11-14 09:45:27,344 [DEBUG] contig 46245 to 51206 2017-11-14 09:45:27,344 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,344 [DEBUG] Moving from ref0262207.28e3 to ref0262207.29e5 (p=1) 2017-11-14 09:45:27,344 [DEBUG] unimproved gap 2017-11-14 09:45:27,344 [DEBUG] Moving from ref0262207.29e5 to ref0262207.29e3 (p=1) 2017-11-14 09:45:27,344 [DEBUG] contig 2017-11-14 09:45:27,345 [DEBUG] who? ref0262207.29e5 ref0262207.29e3 2017-11-14 09:45:27,345 [DEBUG] Grabbing contig between nodes ref0262207.29e5 & ref0262207.29e3 - [trim 0, 0] 2017-11-14 09:45:27,345 [DEBUG] contig 51868 to 55567 2017-11-14 09:45:27,345 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,345 [DEBUG] Moving from ref0262207.29e3 to ref0262207.30e5 (p=1) 2017-11-14 09:45:27,345 [DEBUG] unimproved gap 2017-11-14 09:45:27,345 [DEBUG] Moving from ref0262207.30e5 to ref0262207e3 (p=1) 2017-11-14 09:45:27,345 [DEBUG] contig 2017-11-14 09:45:27,345 [DEBUG] who? ref0262207.30e5 ref0262207e3 2017-11-14 09:45:27,345 [DEBUG] Grabbing contig between nodes ref0262207.30e5 & ref0262207e3 - [trim 0, 0] 2017-11-14 09:45:27,345 [DEBUG] contig 55787 to 56118 2017-11-14 09:45:27,345 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,346 [DEBUG] Contig 2 2017-11-14 09:45:27,350 [DEBUG] Moving from ref0042031e3 to ref0042031.27e5 (p=1) 2017-11-14 09:45:27,350 [DEBUG] contig 2017-11-14 09:45:27,350 [DEBUG] who? ref0042031.27e5 ref0042031e3 2017-11-14 09:45:27,350 [DEBUG] Grabbing contig between nodes ref0042031.27e5 & ref0042031e3 - [trim 0, 0] 2017-11-14 09:45:27,350 [DEBUG] contig 21926 to 21988 2017-11-14 09:45:27,350 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,350 [DEBUG] Moving from ref0042031.27e5 to ref0042031.26e3 (p=1) 2017-11-14 09:45:27,350 [DEBUG] unimproved gap 2017-11-14 09:45:27,350 [DEBUG] Moving from ref0042031.26e3 to ref0042031.26e5 (p=1) 2017-11-14 09:45:27,350 [DEBUG] contig 2017-11-14 09:45:27,351 [DEBUG] who? ref0042031.26e5 ref0042031.26e3 2017-11-14 09:45:27,351 [DEBUG] Grabbing contig between nodes ref0042031.26e5 & ref0042031.26e3 - [trim 0, 0] 2017-11-14 09:45:27,351 [DEBUG] contig 21546 to 21690 2017-11-14 09:45:27,351 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,351 [DEBUG] Moving from ref0042031.26e5 to ref0042031.25e3 (p=1) 2017-11-14 09:45:27,351 [DEBUG] unimproved gap 2017-11-14 09:45:27,351 [DEBUG] Moving from ref0042031.25e3 to ref0042031.25e5 (p=1) 2017-11-14 09:45:27,351 [DEBUG] contig 2017-11-14 09:45:27,351 [DEBUG] who? ref0042031.25e5 ref0042031.25e3 2017-11-14 09:45:27,351 [DEBUG] Grabbing contig between nodes ref0042031.25e5 & ref0042031.25e3 - [trim 0, 0] 2017-11-14 09:45:27,351 [DEBUG] contig 21301 to 21413 2017-11-14 09:45:27,351 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,351 [DEBUG] Moving from ref0042031.25e5 to ref0042031.24e3 (p=1) 2017-11-14 09:45:27,352 [DEBUG] unimproved gap 2017-11-14 09:45:27,352 [DEBUG] Moving from ref0042031.24e3 to ref0042031.24e5 (p=1) 2017-11-14 09:45:27,352 [DEBUG] contig 2017-11-14 09:45:27,352 [DEBUG] who? ref0042031.24e5 ref0042031.24e3 2017-11-14 09:45:27,352 [DEBUG] Grabbing contig between nodes ref0042031.24e5 & ref0042031.24e3 - [trim 0, 0] 2017-11-14 09:45:27,352 [DEBUG] contig 20170 to 21041 2017-11-14 09:45:27,352 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,352 [DEBUG] Moving from ref0042031.24e5 to ref0042031.23e3 (p=1) 2017-11-14 09:45:27,352 [DEBUG] unimproved gap 2017-11-14 09:45:27,352 [DEBUG] Moving from ref0042031.23e3 to ref0042031.23e5 (p=1) 2017-11-14 09:45:27,352 [DEBUG] contig 2017-11-14 09:45:27,352 [DEBUG] who? ref0042031.23e5 ref0042031.23e3 2017-11-14 09:45:27,352 [DEBUG] Grabbing contig between nodes ref0042031.23e5 & ref0042031.23e3 - [trim 0, 0] 2017-11-14 09:45:27,353 [DEBUG] contig 19017 to 19983 2017-11-14 09:45:27,353 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,353 [DEBUG] Moving from ref0042031.23e5 to ref0042031.22e3 (p=1) 2017-11-14 09:45:27,353 [DEBUG] unimproved gap 2017-11-14 09:45:27,353 [DEBUG] Moving from ref0042031.22e3 to ref0042031.22e5 (p=1) 2017-11-14 09:45:27,353 [DEBUG] contig 2017-11-14 09:45:27,353 [DEBUG] who? ref0042031.22e5 ref0042031.22e3 2017-11-14 09:45:27,353 [DEBUG] Grabbing contig between nodes ref0042031.22e5 & ref0042031.22e3 - [trim 0, 0] 2017-11-14 09:45:27,353 [DEBUG] contig 18488 to 18910 2017-11-14 09:45:27,353 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,353 [DEBUG] Moving from ref0042031.22e5 to ref0042031.21e3 (p=1) 2017-11-14 09:45:27,353 [DEBUG] unimproved gap 2017-11-14 09:45:27,353 [DEBUG] Moving from ref0042031.21e3 to ref0042031.21e5 (p=1) 2017-11-14 09:45:27,353 [DEBUG] contig 2017-11-14 09:45:27,354 [DEBUG] who? ref0042031.21e5 ref0042031.21e3 2017-11-14 09:45:27,354 [DEBUG] Grabbing contig between nodes ref0042031.21e5 & ref0042031.21e3 - [trim 0, 0] 2017-11-14 09:45:27,354 [DEBUG] contig 18019 to 18415 2017-11-14 09:45:27,354 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,354 [DEBUG] Moving from ref0042031.21e5 to ref0042031.20e3 (p=1) 2017-11-14 09:45:27,354 [DEBUG] unimproved gap 2017-11-14 09:45:27,354 [DEBUG] Moving from ref0042031.20e3 to ref0042031.20e5 (p=1) 2017-11-14 09:45:27,354 [DEBUG] contig 2017-11-14 09:45:27,354 [DEBUG] who? ref0042031.20e5 ref0042031.20e3 2017-11-14 09:45:27,354 [DEBUG] Grabbing contig between nodes ref0042031.20e5 & ref0042031.20e3 - [trim 0, 0] 2017-11-14 09:45:27,354 [DEBUG] contig 15626 to 17690 2017-11-14 09:45:27,354 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,354 [DEBUG] Moving from ref0042031.20e5 to ref0042031.19e3 (p=1) 2017-11-14 09:45:27,355 [DEBUG] unimproved gap 2017-11-14 09:45:27,355 [DEBUG] Moving from ref0042031.19e3 to ref0042031.19e5 (p=1) 2017-11-14 09:45:27,355 [DEBUG] contig 2017-11-14 09:45:27,355 [DEBUG] who? ref0042031.19e5 ref0042031.19e3 2017-11-14 09:45:27,355 [DEBUG] Grabbing contig between nodes ref0042031.19e5 & ref0042031.19e3 - [trim 0, 0] 2017-11-14 09:45:27,355 [DEBUG] contig 14974 to 15463 2017-11-14 09:45:27,355 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,355 [DEBUG] Moving from ref0042031.19e5 to ref0042031.18e3 (p=1) 2017-11-14 09:45:27,355 [DEBUG] unimproved gap 2017-11-14 09:45:27,355 [DEBUG] Moving from ref0042031.18e3 to ref0042031.18e5 (p=1) 2017-11-14 09:45:27,355 [DEBUG] contig 2017-11-14 09:45:27,355 [DEBUG] who? ref0042031.18e5 ref0042031.18e3 2017-11-14 09:45:27,355 [DEBUG] Grabbing contig between nodes ref0042031.18e5 & ref0042031.18e3 - [trim 0, 0] 2017-11-14 09:45:27,356 [DEBUG] contig 14797 to 14830 2017-11-14 09:45:27,356 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,356 [DEBUG] Moving from ref0042031.18e5 to ref0042031.17e3 (p=1) 2017-11-14 09:45:27,356 [DEBUG] unimproved gap 2017-11-14 09:45:27,356 [DEBUG] Moving from ref0042031.17e3 to ref0042031.17e5 (p=1) 2017-11-14 09:45:27,356 [DEBUG] contig 2017-11-14 09:45:27,356 [DEBUG] who? ref0042031.17e5 ref0042031.17e3 2017-11-14 09:45:27,356 [DEBUG] Grabbing contig between nodes ref0042031.17e5 & ref0042031.17e3 - [trim 0, 0] 2017-11-14 09:45:27,356 [DEBUG] contig 13365 to 14439 2017-11-14 09:45:27,356 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,356 [DEBUG] Moving from ref0042031.17e5 to ref0042031.16e3 (p=1) 2017-11-14 09:45:27,356 [DEBUG] unimproved gap 2017-11-14 09:45:27,356 [DEBUG] Moving from ref0042031.16e3 to ref0042031.16e5 (p=1) 2017-11-14 09:45:27,356 [DEBUG] contig 2017-11-14 09:45:27,357 [DEBUG] who? ref0042031.16e5 ref0042031.16e3 2017-11-14 09:45:27,357 [DEBUG] Grabbing contig between nodes ref0042031.16e5 & ref0042031.16e3 - [trim 0, 0] 2017-11-14 09:45:27,357 [DEBUG] contig 13276 to 13318 2017-11-14 09:45:27,357 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,357 [DEBUG] Moving from ref0042031.16e5 to ref0042031.15e3 (p=1) 2017-11-14 09:45:27,357 [DEBUG] unimproved gap 2017-11-14 09:45:27,357 [DEBUG] Moving from ref0042031.15e3 to ref0042031.15e5 (p=1) 2017-11-14 09:45:27,357 [DEBUG] contig 2017-11-14 09:45:27,357 [DEBUG] who? ref0042031.15e5 ref0042031.15e3 2017-11-14 09:45:27,357 [DEBUG] Grabbing contig between nodes ref0042031.15e5 & ref0042031.15e3 - [trim 0, 0] 2017-11-14 09:45:27,357 [DEBUG] contig 12983 to 13118 2017-11-14 09:45:27,357 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,357 [DEBUG] Moving from ref0042031.15e5 to ref0042031.14e3 (p=1) 2017-11-14 09:45:27,358 [DEBUG] unimproved gap 2017-11-14 09:45:27,358 [DEBUG] Moving from ref0042031.14e3 to ref0042031.14e5 (p=1) 2017-11-14 09:45:27,358 [DEBUG] contig 2017-11-14 09:45:27,358 [DEBUG] who? ref0042031.14e5 ref0042031.14e3 2017-11-14 09:45:27,358 [DEBUG] Grabbing contig between nodes ref0042031.14e5 & ref0042031.14e3 - [trim 0, 0] 2017-11-14 09:45:27,358 [DEBUG] contig 12392 to 12817 2017-11-14 09:45:27,358 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,358 [DEBUG] Moving from ref0042031.14e5 to ref0042031.13e3 (p=1) 2017-11-14 09:45:27,358 [DEBUG] unimproved gap 2017-11-14 09:45:27,358 [DEBUG] Moving from ref0042031.13e3 to ref0042031.13e5 (p=1) 2017-11-14 09:45:27,358 [DEBUG] contig 2017-11-14 09:45:27,358 [DEBUG] who? ref0042031.13e5 ref0042031.13e3 2017-11-14 09:45:27,358 [DEBUG] Grabbing contig between nodes ref0042031.13e5 & ref0042031.13e3 - [trim 0, 0] 2017-11-14 09:45:27,359 [DEBUG] contig 10691 to 12341 2017-11-14 09:45:27,359 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,359 [DEBUG] Moving from ref0042031.13e5 to ref0042031.12e3 (p=1) 2017-11-14 09:45:27,359 [DEBUG] unimproved gap 2017-11-14 09:45:27,359 [DEBUG] Moving from ref0042031.12e3 to ref0042031.12e5 (p=1) 2017-11-14 09:45:27,359 [DEBUG] contig 2017-11-14 09:45:27,359 [DEBUG] who? ref0042031.12e5 ref0042031.12e3 2017-11-14 09:45:27,359 [DEBUG] Grabbing contig between nodes ref0042031.12e5 & ref0042031.12e3 - [trim 0, 0] 2017-11-14 09:45:27,359 [DEBUG] contig 9765 to 10608 2017-11-14 09:45:27,359 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,359 [DEBUG] Moving from ref0042031.12e5 to ref0042031.11e3 (p=1) 2017-11-14 09:45:27,359 [DEBUG] unimproved gap 2017-11-14 09:45:27,359 [DEBUG] Moving from ref0042031.11e3 to ref0042031.11e5 (p=1) 2017-11-14 09:45:27,359 [DEBUG] contig 2017-11-14 09:45:27,360 [DEBUG] who? ref0042031.11e5 ref0042031.11e3 2017-11-14 09:45:27,360 [DEBUG] Grabbing contig between nodes ref0042031.11e5 & ref0042031.11e3 - [trim 0, 0] 2017-11-14 09:45:27,360 [DEBUG] contig 6961 to 9700 2017-11-14 09:45:27,360 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,360 [DEBUG] Moving from ref0042031.11e5 to ref0042031.10e3 (p=1) 2017-11-14 09:45:27,360 [DEBUG] unimproved gap 2017-11-14 09:45:27,360 [DEBUG] Moving from ref0042031.10e3 to ref0042031.10e5 (p=1) 2017-11-14 09:45:27,360 [DEBUG] contig 2017-11-14 09:45:27,360 [DEBUG] who? ref0042031.10e5 ref0042031.10e3 2017-11-14 09:45:27,360 [DEBUG] Grabbing contig between nodes ref0042031.10e5 & ref0042031.10e3 - [trim 0, 0] 2017-11-14 09:45:27,360 [DEBUG] contig 6791 to 6839 2017-11-14 09:45:27,360 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,360 [DEBUG] Moving from ref0042031.10e5 to ref0042031.9e3 (p=1) 2017-11-14 09:45:27,361 [DEBUG] unimproved gap 2017-11-14 09:45:27,361 [DEBUG] Moving from ref0042031.9e3 to ref0042031.9e5 (p=1) 2017-11-14 09:45:27,361 [DEBUG] contig 2017-11-14 09:45:27,361 [DEBUG] who? ref0042031.9e5 ref0042031.9e3 2017-11-14 09:45:27,361 [DEBUG] Grabbing contig between nodes ref0042031.9e5 & ref0042031.9e3 - [trim 0, 0] 2017-11-14 09:45:27,361 [DEBUG] contig 5199 to 6604 2017-11-14 09:45:27,361 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,361 [DEBUG] Moving from ref0042031.9e5 to ref0042031.8e3 (p=1) 2017-11-14 09:45:27,361 [DEBUG] unimproved gap 2017-11-14 09:45:27,361 [DEBUG] Moving from ref0042031.8e3 to ref0042031.8e5 (p=1) 2017-11-14 09:45:27,361 [DEBUG] contig 2017-11-14 09:45:27,361 [DEBUG] who? ref0042031.8e5 ref0042031.8e3 2017-11-14 09:45:27,361 [DEBUG] Grabbing contig between nodes ref0042031.8e5 & ref0042031.8e3 - [trim 0, 0] 2017-11-14 09:45:27,361 [DEBUG] contig 4827 to 4954 2017-11-14 09:45:27,362 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,362 [DEBUG] Moving from ref0042031.8e5 to ref0042031.7e3 (p=1) 2017-11-14 09:45:27,362 [DEBUG] unimproved gap 2017-11-14 09:45:27,362 [DEBUG] Moving from ref0042031.7e3 to ref0042031.7e5 (p=1) 2017-11-14 09:45:27,362 [DEBUG] contig 2017-11-14 09:45:27,362 [DEBUG] who? ref0042031.7e5 ref0042031.7e3 2017-11-14 09:45:27,362 [DEBUG] Grabbing contig between nodes ref0042031.7e5 & ref0042031.7e3 - [trim 0, 0] 2017-11-14 09:45:27,362 [DEBUG] contig 4570 to 4623 2017-11-14 09:45:27,362 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,362 [DEBUG] Moving from ref0042031.7e5 to ref0042031.6e3 (p=1) 2017-11-14 09:45:27,362 [DEBUG] unimproved gap 2017-11-14 09:45:27,362 [DEBUG] Moving from ref0042031.6e3 to ref0042031.6e5 (p=1) 2017-11-14 09:45:27,362 [DEBUG] contig 2017-11-14 09:45:27,363 [DEBUG] who? ref0042031.6e5 ref0042031.6e3 2017-11-14 09:45:27,363 [DEBUG] Grabbing contig between nodes ref0042031.6e5 & ref0042031.6e3 - [trim 0, 0] 2017-11-14 09:45:27,363 [DEBUG] contig 3723 to 4452 2017-11-14 09:45:27,363 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,363 [DEBUG] Moving from ref0042031.6e5 to ref0042031.5e3 (p=1) 2017-11-14 09:45:27,363 [DEBUG] unimproved gap 2017-11-14 09:45:27,363 [DEBUG] Moving from ref0042031.5e3 to ref0042031.5e5 (p=1) 2017-11-14 09:45:27,363 [DEBUG] contig 2017-11-14 09:45:27,363 [DEBUG] who? ref0042031.5e5 ref0042031.5e3 2017-11-14 09:45:27,363 [DEBUG] Grabbing contig between nodes ref0042031.5e5 & ref0042031.5e3 - [trim 0, 0] 2017-11-14 09:45:27,363 [DEBUG] contig 3572 to 3602 2017-11-14 09:45:27,363 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,363 [DEBUG] Moving from ref0042031.5e5 to ref0042031.4e3 (p=1) 2017-11-14 09:45:27,363 [DEBUG] unimproved gap 2017-11-14 09:45:27,364 [DEBUG] Moving from ref0042031.4e3 to ref0042031.4e5 (p=1) 2017-11-14 09:45:27,364 [DEBUG] contig 2017-11-14 09:45:27,364 [DEBUG] who? ref0042031.4e5 ref0042031.4e3 2017-11-14 09:45:27,364 [DEBUG] Grabbing contig between nodes ref0042031.4e5 & ref0042031.4e3 - [trim 0, 0] 2017-11-14 09:45:27,364 [DEBUG] contig 2786 to 3244 2017-11-14 09:45:27,364 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,364 [DEBUG] Moving from ref0042031.4e5 to ref0042031.3e3 (p=1) 2017-11-14 09:45:27,364 [DEBUG] unimproved gap 2017-11-14 09:45:27,364 [DEBUG] Moving from ref0042031.3e3 to ref0042031.3e5 (p=1) 2017-11-14 09:45:27,364 [DEBUG] contig 2017-11-14 09:45:27,364 [DEBUG] who? ref0042031.3e5 ref0042031.3e3 2017-11-14 09:45:27,364 [DEBUG] Grabbing contig between nodes ref0042031.3e5 & ref0042031.3e3 - [trim 0, 0] 2017-11-14 09:45:27,364 [DEBUG] contig 1696 to 2499 2017-11-14 09:45:27,365 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,365 [DEBUG] Moving from ref0042031.3e5 to ref0042031.2e3 (p=1) 2017-11-14 09:45:27,365 [DEBUG] unimproved gap 2017-11-14 09:45:27,365 [DEBUG] Moving from ref0042031.2e3 to ref0042031.2e5 (p=1) 2017-11-14 09:45:27,365 [DEBUG] contig 2017-11-14 09:45:27,365 [DEBUG] who? ref0042031.2e5 ref0042031.2e3 2017-11-14 09:45:27,365 [DEBUG] Grabbing contig between nodes ref0042031.2e5 & ref0042031.2e3 - [trim 0, 0] 2017-11-14 09:45:27,365 [DEBUG] contig 1061 to 1459 2017-11-14 09:45:27,365 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,365 [DEBUG] Moving from ref0042031.2e5 to ref0042031.1e3 (p=1) 2017-11-14 09:45:27,365 [DEBUG] unimproved gap 2017-11-14 09:45:27,365 [DEBUG] Moving from ref0042031.1e3 to ref0042031.1e5 (p=1) 2017-11-14 09:45:27,365 [DEBUG] contig 2017-11-14 09:45:27,366 [DEBUG] who? ref0042031.1e5 ref0042031.1e3 2017-11-14 09:45:27,366 [DEBUG] Grabbing contig between nodes ref0042031.1e5 & ref0042031.1e3 - [trim 0, 0] 2017-11-14 09:45:27,366 [DEBUG] contig 515 to 942 2017-11-14 09:45:27,366 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,366 [DEBUG] Moving from ref0042031.1e5 to ref0042031.0e3 (p=1) 2017-11-14 09:45:27,366 [DEBUG] unimproved gap 2017-11-14 09:45:27,366 [DEBUG] Moving from ref0042031.0e3 to ref0042031e5 (p=1) 2017-11-14 09:45:27,366 [DEBUG] contig 2017-11-14 09:45:27,366 [DEBUG] who? ref0042031e5 ref0042031.0e3 2017-11-14 09:45:27,366 [DEBUG] Grabbing contig between nodes ref0042031e5 & ref0042031.0e3 - [trim 0, 0] 2017-11-14 09:45:27,366 [DEBUG] contig 0 to 65 2017-11-14 09:45:27,366 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,366 [DEBUG] FirstFlipping 2 2017-11-14 09:45:27,367 [DEBUG] Contig 3 2017-11-14 09:45:27,371 [DEBUG] Moving from ref0305138e3 to ref0305138.26e5 (p=1) 2017-11-14 09:45:27,371 [DEBUG] contig 2017-11-14 09:45:27,371 [DEBUG] who? ref0305138.26e5 ref0305138e3 2017-11-14 09:45:27,371 [DEBUG] Grabbing contig between nodes ref0305138.26e5 & ref0305138e3 - [trim 0, 0] 2017-11-14 09:45:27,371 [DEBUG] contig 24254 to 25287 2017-11-14 09:45:27,371 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,371 [DEBUG] Moving from ref0305138.26e5 to ref0305138.25e3 (p=1) 2017-11-14 09:45:27,371 [DEBUG] unimproved gap 2017-11-14 09:45:27,371 [DEBUG] Moving from ref0305138.25e3 to ref0305138.25e5 (p=1) 2017-11-14 09:45:27,372 [DEBUG] contig 2017-11-14 09:45:27,372 [DEBUG] who? ref0305138.25e5 ref0305138.25e3 2017-11-14 09:45:27,372 [DEBUG] Grabbing contig between nodes ref0305138.25e5 & ref0305138.25e3 - [trim 0, 0] 2017-11-14 09:45:27,372 [DEBUG] contig 23981 to 24170 2017-11-14 09:45:27,372 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,372 [DEBUG] Moving from ref0305138.25e5 to ref0305138.24e3 (p=1) 2017-11-14 09:45:27,372 [DEBUG] unimproved gap 2017-11-14 09:45:27,372 [DEBUG] Moving from ref0305138.24e3 to ref0305138.24e5 (p=1) 2017-11-14 09:45:27,372 [DEBUG] contig 2017-11-14 09:45:27,372 [DEBUG] who? ref0305138.24e5 ref0305138.24e3 2017-11-14 09:45:27,372 [DEBUG] Grabbing contig between nodes ref0305138.24e5 & ref0305138.24e3 - [trim 0, 0] 2017-11-14 09:45:27,372 [DEBUG] contig 20587 to 23613 2017-11-14 09:45:27,372 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,373 [DEBUG] Moving from ref0305138.24e5 to ref0305138.23e3 (p=1) 2017-11-14 09:45:27,373 [DEBUG] unimproved gap 2017-11-14 09:45:27,373 [DEBUG] Moving from ref0305138.23e3 to ref0305138.23e5 (p=1) 2017-11-14 09:45:27,373 [DEBUG] contig 2017-11-14 09:45:27,373 [DEBUG] who? ref0305138.23e5 ref0305138.23e3 2017-11-14 09:45:27,373 [DEBUG] Grabbing contig between nodes ref0305138.23e5 & ref0305138.23e3 - [trim 0, 0] 2017-11-14 09:45:27,373 [DEBUG] contig 19462 to 19987 2017-11-14 09:45:27,373 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,373 [DEBUG] Moving from ref0305138.23e5 to ref0305138.22e3 (p=1) 2017-11-14 09:45:27,373 [DEBUG] unimproved gap 2017-11-14 09:45:27,373 [DEBUG] Moving from ref0305138.22e3 to ref0305138.22e5 (p=1) 2017-11-14 09:45:27,373 [DEBUG] contig 2017-11-14 09:45:27,373 [DEBUG] who? ref0305138.22e5 ref0305138.22e3 2017-11-14 09:45:27,374 [DEBUG] Grabbing contig between nodes ref0305138.22e5 & ref0305138.22e3 - [trim 0, 0] 2017-11-14 09:45:27,374 [DEBUG] contig 18564 to 19120 2017-11-14 09:45:27,374 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,374 [DEBUG] Moving from ref0305138.22e5 to ref0305138.21e3 (p=1) 2017-11-14 09:45:27,374 [DEBUG] unimproved gap 2017-11-14 09:45:27,374 [DEBUG] Moving from ref0305138.21e3 to ref0305138.21e5 (p=1) 2017-11-14 09:45:27,374 [DEBUG] contig 2017-11-14 09:45:27,374 [DEBUG] who? ref0305138.21e5 ref0305138.21e3 2017-11-14 09:45:27,374 [DEBUG] Grabbing contig between nodes ref0305138.21e5 & ref0305138.21e3 - [trim 0, 0] 2017-11-14 09:45:27,374 [DEBUG] contig 17565 to 18476 2017-11-14 09:45:27,374 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,374 [DEBUG] Moving from ref0305138.21e5 to ref0305138.20e3 (p=1) 2017-11-14 09:45:27,374 [DEBUG] unimproved gap 2017-11-14 09:45:27,375 [DEBUG] Moving from ref0305138.20e3 to ref0305138.20e5 (p=1) 2017-11-14 09:45:27,375 [DEBUG] contig 2017-11-14 09:45:27,375 [DEBUG] who? ref0305138.20e5 ref0305138.20e3 2017-11-14 09:45:27,375 [DEBUG] Grabbing contig between nodes ref0305138.20e5 & ref0305138.20e3 - [trim 0, 0] 2017-11-14 09:45:27,375 [DEBUG] contig 16335 to 17311 2017-11-14 09:45:27,375 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,375 [DEBUG] Moving from ref0305138.20e5 to ref0305138.19e3 (p=1) 2017-11-14 09:45:27,375 [DEBUG] unimproved gap 2017-11-14 09:45:27,375 [DEBUG] Moving from ref0305138.19e3 to ref0305138.19e5 (p=1) 2017-11-14 09:45:27,375 [DEBUG] contig 2017-11-14 09:45:27,375 [DEBUG] who? ref0305138.19e5 ref0305138.19e3 2017-11-14 09:45:27,375 [DEBUG] Grabbing contig between nodes ref0305138.19e5 & ref0305138.19e3 - [trim 0, 0] 2017-11-14 09:45:27,375 [DEBUG] contig 15803 to 16246 2017-11-14 09:45:27,375 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,376 [DEBUG] Moving from ref0305138.19e5 to ref0305138.18e3 (p=1) 2017-11-14 09:45:27,376 [DEBUG] unimproved gap 2017-11-14 09:45:27,376 [DEBUG] Moving from ref0305138.18e3 to ref0305138.18e5 (p=1) 2017-11-14 09:45:27,376 [DEBUG] contig 2017-11-14 09:45:27,376 [DEBUG] who? ref0305138.18e5 ref0305138.18e3 2017-11-14 09:45:27,376 [DEBUG] Grabbing contig between nodes ref0305138.18e5 & ref0305138.18e3 - [trim 0, 0] 2017-11-14 09:45:27,376 [DEBUG] contig 15290 to 15566 2017-11-14 09:45:27,376 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,376 [DEBUG] Moving from ref0305138.18e5 to ref0305138.17e3 (p=1) 2017-11-14 09:45:27,376 [DEBUG] unimproved gap 2017-11-14 09:45:27,376 [DEBUG] Moving from ref0305138.17e3 to ref0305138.17e5 (p=1) 2017-11-14 09:45:27,376 [DEBUG] contig 2017-11-14 09:45:27,376 [DEBUG] who? ref0305138.17e5 ref0305138.17e3 2017-11-14 09:45:27,377 [DEBUG] Grabbing contig between nodes ref0305138.17e5 & ref0305138.17e3 - [trim 0, 0] 2017-11-14 09:45:27,377 [DEBUG] contig 14886 to 14933 2017-11-14 09:45:27,377 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,377 [DEBUG] Moving from ref0305138.17e5 to ref0305138.16e3 (p=1) 2017-11-14 09:45:27,377 [DEBUG] unimproved gap 2017-11-14 09:45:27,377 [DEBUG] Moving from ref0305138.16e3 to ref0305138.16e5 (p=1) 2017-11-14 09:45:27,377 [DEBUG] contig 2017-11-14 09:45:27,377 [DEBUG] who? ref0305138.16e5 ref0305138.16e3 2017-11-14 09:45:27,377 [DEBUG] Grabbing contig between nodes ref0305138.16e5 & ref0305138.16e3 - [trim 0, 0] 2017-11-14 09:45:27,377 [DEBUG] contig 14567 to 14746 2017-11-14 09:45:27,377 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,377 [DEBUG] Moving from ref0305138.16e5 to ref0305138.15e3 (p=1) 2017-11-14 09:45:27,377 [DEBUG] unimproved gap 2017-11-14 09:45:27,378 [DEBUG] Moving from ref0305138.15e3 to ref0305138.15e5 (p=1) 2017-11-14 09:45:27,378 [DEBUG] contig 2017-11-14 09:45:27,378 [DEBUG] who? ref0305138.15e5 ref0305138.15e3 2017-11-14 09:45:27,378 [DEBUG] Grabbing contig between nodes ref0305138.15e5 & ref0305138.15e3 - [trim 0, 0] 2017-11-14 09:45:27,378 [DEBUG] contig 14239 to 14436 2017-11-14 09:45:27,378 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,378 [DEBUG] Moving from ref0305138.15e5 to ref0305138.14e3 (p=1) 2017-11-14 09:45:27,378 [DEBUG] unimproved gap 2017-11-14 09:45:27,378 [DEBUG] Moving from ref0305138.14e3 to ref0305138.14e5 (p=1) 2017-11-14 09:45:27,378 [DEBUG] contig 2017-11-14 09:45:27,378 [DEBUG] who? ref0305138.14e5 ref0305138.14e3 2017-11-14 09:45:27,378 [DEBUG] Grabbing contig between nodes ref0305138.14e5 & ref0305138.14e3 - [trim 0, 0] 2017-11-14 09:45:27,378 [DEBUG] contig 13793 to 14051 2017-11-14 09:45:27,378 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,379 [DEBUG] Moving from ref0305138.14e5 to ref0305138.13e3 (p=1) 2017-11-14 09:45:27,379 [DEBUG] unimproved gap 2017-11-14 09:45:27,379 [DEBUG] Moving from ref0305138.13e3 to ref0305138.13e5 (p=1) 2017-11-14 09:45:27,379 [DEBUG] contig 2017-11-14 09:45:27,379 [DEBUG] who? ref0305138.13e5 ref0305138.13e3 2017-11-14 09:45:27,379 [DEBUG] Grabbing contig between nodes ref0305138.13e5 & ref0305138.13e3 - [trim 0, 0] 2017-11-14 09:45:27,379 [DEBUG] contig 13315 to 13630 2017-11-14 09:45:27,379 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,379 [DEBUG] Moving from ref0305138.13e5 to ref0305138.12e3 (p=1) 2017-11-14 09:45:27,379 [DEBUG] unimproved gap 2017-11-14 09:45:27,379 [DEBUG] Moving from ref0305138.12e3 to ref0305138.12e5 (p=1) 2017-11-14 09:45:27,379 [DEBUG] contig 2017-11-14 09:45:27,379 [DEBUG] who? ref0305138.12e5 ref0305138.12e3 2017-11-14 09:45:27,380 [DEBUG] Grabbing contig between nodes ref0305138.12e5 & ref0305138.12e3 - [trim 0, 0] 2017-11-14 09:45:27,380 [DEBUG] contig 12983 to 13179 2017-11-14 09:45:27,380 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,380 [DEBUG] Moving from ref0305138.12e5 to ref0305138.11e3 (p=1) 2017-11-14 09:45:27,380 [DEBUG] unimproved gap 2017-11-14 09:45:27,380 [DEBUG] Moving from ref0305138.11e3 to ref0305138.11e5 (p=1) 2017-11-14 09:45:27,380 [DEBUG] contig 2017-11-14 09:45:27,380 [DEBUG] who? ref0305138.11e5 ref0305138.11e3 2017-11-14 09:45:27,380 [DEBUG] Grabbing contig between nodes ref0305138.11e5 & ref0305138.11e3 - [trim 0, 0] 2017-11-14 09:45:27,380 [DEBUG] contig 12290 to 12532 2017-11-14 09:45:27,380 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,380 [DEBUG] Moving from ref0305138.11e5 to ref0305138.10e3 (p=1) 2017-11-14 09:45:27,380 [DEBUG] unimproved gap 2017-11-14 09:45:27,381 [DEBUG] Moving from ref0305138.10e3 to ref0305138.10e5 (p=1) 2017-11-14 09:45:27,381 [DEBUG] contig 2017-11-14 09:45:27,381 [DEBUG] who? ref0305138.10e5 ref0305138.10e3 2017-11-14 09:45:27,381 [DEBUG] Grabbing contig between nodes ref0305138.10e5 & ref0305138.10e3 - [trim 0, 0] 2017-11-14 09:45:27,381 [DEBUG] contig 11716 to 12083 2017-11-14 09:45:27,381 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,381 [DEBUG] Moving from ref0305138.10e5 to ref0305138.9e3 (p=1) 2017-11-14 09:45:27,381 [DEBUG] unimproved gap 2017-11-14 09:45:27,381 [DEBUG] Moving from ref0305138.9e3 to ref0305138.9e5 (p=1) 2017-11-14 09:45:27,381 [DEBUG] contig 2017-11-14 09:45:27,381 [DEBUG] who? ref0305138.9e5 ref0305138.9e3 2017-11-14 09:45:27,381 [DEBUG] Grabbing contig between nodes ref0305138.9e5 & ref0305138.9e3 - [trim 0, 0] 2017-11-14 09:45:27,381 [DEBUG] contig 9498 to 11625 2017-11-14 09:45:27,381 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,382 [DEBUG] Moving from ref0305138.9e5 to ref0305138.8e3 (p=1) 2017-11-14 09:45:27,382 [DEBUG] unimproved gap 2017-11-14 09:45:27,382 [DEBUG] Moving from ref0305138.8e3 to ref0305138.8e5 (p=1) 2017-11-14 09:45:27,382 [DEBUG] contig 2017-11-14 09:45:27,382 [DEBUG] who? ref0305138.8e5 ref0305138.8e3 2017-11-14 09:45:27,382 [DEBUG] Grabbing contig between nodes ref0305138.8e5 & ref0305138.8e3 - [trim 0, 0] 2017-11-14 09:45:27,382 [DEBUG] contig 8600 to 8978 2017-11-14 09:45:27,382 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,382 [DEBUG] Moving from ref0305138.8e5 to ref0305138.7e3 (p=1) 2017-11-14 09:45:27,382 [DEBUG] unimproved gap 2017-11-14 09:45:27,382 [DEBUG] Moving from ref0305138.7e3 to ref0305138.7e5 (p=1) 2017-11-14 09:45:27,382 [DEBUG] contig 2017-11-14 09:45:27,382 [DEBUG] who? ref0305138.7e5 ref0305138.7e3 2017-11-14 09:45:27,383 [DEBUG] Grabbing contig between nodes ref0305138.7e5 & ref0305138.7e3 - [trim 0, 0] 2017-11-14 09:45:27,383 [DEBUG] contig 7745 to 8538 2017-11-14 09:45:27,383 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,383 [DEBUG] Moving from ref0305138.7e5 to ref0305138.6e3 (p=1) 2017-11-14 09:45:27,383 [DEBUG] unimproved gap 2017-11-14 09:45:27,383 [DEBUG] Moving from ref0305138.6e3 to ref0305138.6e5 (p=1) 2017-11-14 09:45:27,383 [DEBUG] contig 2017-11-14 09:45:27,383 [DEBUG] who? ref0305138.6e5 ref0305138.6e3 2017-11-14 09:45:27,383 [DEBUG] Grabbing contig between nodes ref0305138.6e5 & ref0305138.6e3 - [trim 0, 0] 2017-11-14 09:45:27,383 [DEBUG] contig 7493 to 7518 2017-11-14 09:45:27,383 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,383 [DEBUG] Moving from ref0305138.6e5 to ref0305138.5e3 (p=1) 2017-11-14 09:45:27,383 [DEBUG] unimproved gap 2017-11-14 09:45:27,383 [DEBUG] Moving from ref0305138.5e3 to ref0305138.5e5 (p=1) 2017-11-14 09:45:27,384 [DEBUG] contig 2017-11-14 09:45:27,384 [DEBUG] who? ref0305138.5e5 ref0305138.5e3 2017-11-14 09:45:27,384 [DEBUG] Grabbing contig between nodes ref0305138.5e5 & ref0305138.5e3 - [trim 0, 0] 2017-11-14 09:45:27,384 [DEBUG] contig 6834 to 7376 2017-11-14 09:45:27,384 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,384 [DEBUG] Moving from ref0305138.5e5 to ref0305138.4e3 (p=1) 2017-11-14 09:45:27,384 [DEBUG] unimproved gap 2017-11-14 09:45:27,384 [DEBUG] Moving from ref0305138.4e3 to ref0305138.4e5 (p=1) 2017-11-14 09:45:27,384 [DEBUG] contig 2017-11-14 09:45:27,384 [DEBUG] who? ref0305138.4e5 ref0305138.4e3 2017-11-14 09:45:27,384 [DEBUG] Grabbing contig between nodes ref0305138.4e5 & ref0305138.4e3 - [trim 0, 0] 2017-11-14 09:45:27,384 [DEBUG] contig 6767 to 6801 2017-11-14 09:45:27,384 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,385 [DEBUG] Moving from ref0305138.4e5 to ref0305138.3e3 (p=1) 2017-11-14 09:45:27,385 [DEBUG] unimproved gap 2017-11-14 09:45:27,385 [DEBUG] Moving from ref0305138.3e3 to ref0305138.3e5 (p=1) 2017-11-14 09:45:27,385 [DEBUG] contig 2017-11-14 09:45:27,385 [DEBUG] who? ref0305138.3e5 ref0305138.3e3 2017-11-14 09:45:27,385 [DEBUG] Grabbing contig between nodes ref0305138.3e5 & ref0305138.3e3 - [trim 0, 0] 2017-11-14 09:45:27,385 [DEBUG] contig 6636 to 6709 2017-11-14 09:45:27,385 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,385 [DEBUG] Moving from ref0305138.3e5 to ref0305138.2e3 (p=1) 2017-11-14 09:45:27,385 [DEBUG] unimproved gap 2017-11-14 09:45:27,385 [DEBUG] Moving from ref0305138.2e3 to ref0305138.2e5 (p=1) 2017-11-14 09:45:27,385 [DEBUG] contig 2017-11-14 09:45:27,385 [DEBUG] who? ref0305138.2e5 ref0305138.2e3 2017-11-14 09:45:27,386 [DEBUG] Grabbing contig between nodes ref0305138.2e5 & ref0305138.2e3 - [trim 0, 0] 2017-11-14 09:45:27,386 [DEBUG] contig 5472 to 6496 2017-11-14 09:45:27,386 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,386 [DEBUG] Moving from ref0305138.2e5 to ref0305138.1e3 (p=1) 2017-11-14 09:45:27,386 [DEBUG] unimproved gap 2017-11-14 09:45:27,386 [DEBUG] Moving from ref0305138.1e3 to ref0305138.1e5 (p=1) 2017-11-14 09:45:27,386 [DEBUG] contig 2017-11-14 09:45:27,386 [DEBUG] who? ref0305138.1e5 ref0305138.1e3 2017-11-14 09:45:27,386 [DEBUG] Grabbing contig between nodes ref0305138.1e5 & ref0305138.1e3 - [trim 0, 0] 2017-11-14 09:45:27,386 [DEBUG] contig 1291 to 5409 2017-11-14 09:45:27,386 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,386 [DEBUG] Moving from ref0305138.1e5 to ref0305138.0e3 (p=1) 2017-11-14 09:45:27,386 [DEBUG] unimproved gap 2017-11-14 09:45:27,386 [DEBUG] Moving from ref0305138.0e3 to ref0305138e5 (p=1) 2017-11-14 09:45:27,387 [DEBUG] contig 2017-11-14 09:45:27,387 [DEBUG] who? ref0305138e5 ref0305138.0e3 2017-11-14 09:45:27,387 [DEBUG] Grabbing contig between nodes ref0305138e5 & ref0305138.0e3 - [trim 0, 0] 2017-11-14 09:45:27,387 [DEBUG] contig 0 to 1010 2017-11-14 09:45:27,387 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,387 [DEBUG] FirstFlipping 3 2017-11-14 09:45:27,387 [DEBUG] Contig 4 2017-11-14 09:45:27,391 [DEBUG] Moving from ref0387590e3 to ref0387590.25e5 (p=1) 2017-11-14 09:45:27,391 [DEBUG] contig 2017-11-14 09:45:27,391 [DEBUG] who? ref0387590.25e5 ref0387590e3 2017-11-14 09:45:27,391 [DEBUG] Grabbing contig between nodes ref0387590.25e5 & ref0387590e3 - [trim 0, 0] 2017-11-14 09:45:27,391 [DEBUG] contig 31066 to 33860 2017-11-14 09:45:27,391 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,392 [DEBUG] Moving from ref0387590.25e5 to ref0387590.24e3 (p=1) 2017-11-14 09:45:27,392 [DEBUG] unimproved gap 2017-11-14 09:45:27,392 [DEBUG] Moving from ref0387590.24e3 to ref0387590.24e5 (p=1) 2017-11-14 09:45:27,392 [DEBUG] contig 2017-11-14 09:45:27,392 [DEBUG] who? ref0387590.24e5 ref0387590.24e3 2017-11-14 09:45:27,392 [DEBUG] Grabbing contig between nodes ref0387590.24e5 & ref0387590.24e3 - [trim 0, 0] 2017-11-14 09:45:27,392 [DEBUG] contig 29109 to 30962 2017-11-14 09:45:27,392 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,392 [DEBUG] Moving from ref0387590.24e5 to ref0387590.23e3 (p=1) 2017-11-14 09:45:27,392 [DEBUG] unimproved gap 2017-11-14 09:45:27,392 [DEBUG] Moving from ref0387590.23e3 to ref0387590.23e5 (p=1) 2017-11-14 09:45:27,392 [DEBUG] contig 2017-11-14 09:45:27,393 [DEBUG] who? ref0387590.23e5 ref0387590.23e3 2017-11-14 09:45:27,393 [DEBUG] Grabbing contig between nodes ref0387590.23e5 & ref0387590.23e3 - [trim 0, 0] 2017-11-14 09:45:27,393 [DEBUG] contig 24046 to 28586 2017-11-14 09:45:27,393 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,393 [DEBUG] Moving from ref0387590.23e5 to ref0387590.22e3 (p=1) 2017-11-14 09:45:27,393 [DEBUG] unimproved gap 2017-11-14 09:45:27,393 [DEBUG] Moving from ref0387590.22e3 to ref0387590.22e5 (p=1) 2017-11-14 09:45:27,393 [DEBUG] contig 2017-11-14 09:45:27,393 [DEBUG] who? ref0387590.22e5 ref0387590.22e3 2017-11-14 09:45:27,393 [DEBUG] Grabbing contig between nodes ref0387590.22e5 & ref0387590.22e3 - [trim 0, 0] 2017-11-14 09:45:27,393 [DEBUG] contig 22076 to 23502 2017-11-14 09:45:27,393 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,393 [DEBUG] Moving from ref0387590.22e5 to ref0387590.21e3 (p=1) 2017-11-14 09:45:27,393 [DEBUG] unimproved gap 2017-11-14 09:45:27,394 [DEBUG] Moving from ref0387590.21e3 to ref0387590.21e5 (p=1) 2017-11-14 09:45:27,394 [DEBUG] contig 2017-11-14 09:45:27,394 [DEBUG] who? ref0387590.21e5 ref0387590.21e3 2017-11-14 09:45:27,394 [DEBUG] Grabbing contig between nodes ref0387590.21e5 & ref0387590.21e3 - [trim 0, 0] 2017-11-14 09:45:27,394 [DEBUG] contig 20488 to 21944 2017-11-14 09:45:27,394 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,394 [DEBUG] Moving from ref0387590.21e5 to ref0387590.20e3 (p=1) 2017-11-14 09:45:27,394 [DEBUG] unimproved gap 2017-11-14 09:45:27,394 [DEBUG] Moving from ref0387590.20e3 to ref0387590.20e5 (p=1) 2017-11-14 09:45:27,394 [DEBUG] contig 2017-11-14 09:45:27,394 [DEBUG] who? ref0387590.20e5 ref0387590.20e3 2017-11-14 09:45:27,394 [DEBUG] Grabbing contig between nodes ref0387590.20e5 & ref0387590.20e3 - [trim 0, 0] 2017-11-14 09:45:27,394 [DEBUG] contig 19566 to 20355 2017-11-14 09:45:27,395 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,395 [DEBUG] Moving from ref0387590.20e5 to ref0387590.19e3 (p=1) 2017-11-14 09:45:27,395 [DEBUG] unimproved gap 2017-11-14 09:45:27,395 [DEBUG] Moving from ref0387590.19e3 to ref0387590.19e5 (p=1) 2017-11-14 09:45:27,395 [DEBUG] contig 2017-11-14 09:45:27,395 [DEBUG] who? ref0387590.19e5 ref0387590.19e3 2017-11-14 09:45:27,395 [DEBUG] Grabbing contig between nodes ref0387590.19e5 & ref0387590.19e3 - [trim 0, 0] 2017-11-14 09:45:27,395 [DEBUG] contig 19238 to 19364 2017-11-14 09:45:27,395 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,395 [DEBUG] Moving from ref0387590.19e5 to ref0387590.18e3 (p=1) 2017-11-14 09:45:27,395 [DEBUG] unimproved gap 2017-11-14 09:45:27,395 [DEBUG] Moving from ref0387590.18e3 to ref0387590.18e5 (p=1) 2017-11-14 09:45:27,395 [DEBUG] contig 2017-11-14 09:45:27,395 [DEBUG] who? ref0387590.18e5 ref0387590.18e3 2017-11-14 09:45:27,396 [DEBUG] Grabbing contig between nodes ref0387590.18e5 & ref0387590.18e3 - [trim 0, 0] 2017-11-14 09:45:27,396 [DEBUG] contig 18656 to 18951 2017-11-14 09:45:27,396 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,396 [DEBUG] Moving from ref0387590.18e5 to ref0387590.17e3 (p=1) 2017-11-14 09:45:27,396 [DEBUG] unimproved gap 2017-11-14 09:45:27,396 [DEBUG] Moving from ref0387590.17e3 to ref0387590.17e5 (p=1) 2017-11-14 09:45:27,396 [DEBUG] contig 2017-11-14 09:45:27,396 [DEBUG] who? ref0387590.17e5 ref0387590.17e3 2017-11-14 09:45:27,396 [DEBUG] Grabbing contig between nodes ref0387590.17e5 & ref0387590.17e3 - [trim 0, 0] 2017-11-14 09:45:27,396 [DEBUG] contig 18291 to 18501 2017-11-14 09:45:27,396 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,396 [DEBUG] Moving from ref0387590.17e5 to ref0387590.16e3 (p=1) 2017-11-14 09:45:27,396 [DEBUG] unimproved gap 2017-11-14 09:45:27,397 [DEBUG] Moving from ref0387590.16e3 to ref0387590.16e5 (p=1) 2017-11-14 09:45:27,397 [DEBUG] contig 2017-11-14 09:45:27,397 [DEBUG] who? ref0387590.16e5 ref0387590.16e3 2017-11-14 09:45:27,397 [DEBUG] Grabbing contig between nodes ref0387590.16e5 & ref0387590.16e3 - [trim 0, 0] 2017-11-14 09:45:27,397 [DEBUG] contig 17668 to 17727 2017-11-14 09:45:27,397 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,397 [DEBUG] Moving from ref0387590.16e5 to ref0387590.15e3 (p=1) 2017-11-14 09:45:27,397 [DEBUG] unimproved gap 2017-11-14 09:45:27,397 [DEBUG] Moving from ref0387590.15e3 to ref0387590.15e5 (p=1) 2017-11-14 09:45:27,397 [DEBUG] contig 2017-11-14 09:45:27,397 [DEBUG] who? ref0387590.15e5 ref0387590.15e3 2017-11-14 09:45:27,397 [DEBUG] Grabbing contig between nodes ref0387590.15e5 & ref0387590.15e3 - [trim 0, 0] 2017-11-14 09:45:27,397 [DEBUG] contig 16988 to 17406 2017-11-14 09:45:27,398 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,398 [DEBUG] Moving from ref0387590.15e5 to ref0387590.14e3 (p=1) 2017-11-14 09:45:27,398 [DEBUG] unimproved gap 2017-11-14 09:45:27,398 [DEBUG] Moving from ref0387590.14e3 to ref0387590.14e5 (p=1) 2017-11-14 09:45:27,398 [DEBUG] contig 2017-11-14 09:45:27,398 [DEBUG] who? ref0387590.14e5 ref0387590.14e3 2017-11-14 09:45:27,398 [DEBUG] Grabbing contig between nodes ref0387590.14e5 & ref0387590.14e3 - [trim 0, 0] 2017-11-14 09:45:27,398 [DEBUG] contig 13805 to 16677 2017-11-14 09:45:27,398 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,398 [DEBUG] Moving from ref0387590.14e5 to ref0387590.13e3 (p=1) 2017-11-14 09:45:27,398 [DEBUG] unimproved gap 2017-11-14 09:45:27,398 [DEBUG] Moving from ref0387590.13e3 to ref0387590.13e5 (p=1) 2017-11-14 09:45:27,398 [DEBUG] contig 2017-11-14 09:45:27,398 [DEBUG] who? ref0387590.13e5 ref0387590.13e3 2017-11-14 09:45:27,399 [DEBUG] Grabbing contig between nodes ref0387590.13e5 & ref0387590.13e3 - [trim 0, 0] 2017-11-14 09:45:27,399 [DEBUG] contig 11548 to 13664 2017-11-14 09:45:27,399 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,399 [DEBUG] Moving from ref0387590.13e5 to ref0387590.12e3 (p=1) 2017-11-14 09:45:27,399 [DEBUG] unimproved gap 2017-11-14 09:45:27,399 [DEBUG] Moving from ref0387590.12e3 to ref0387590.12e5 (p=1) 2017-11-14 09:45:27,399 [DEBUG] contig 2017-11-14 09:45:27,399 [DEBUG] who? ref0387590.12e5 ref0387590.12e3 2017-11-14 09:45:27,399 [DEBUG] Grabbing contig between nodes ref0387590.12e5 & ref0387590.12e3 - [trim 0, 0] 2017-11-14 09:45:27,399 [DEBUG] contig 8430 to 11373 2017-11-14 09:45:27,399 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,399 [DEBUG] Moving from ref0387590.12e5 to ref0387590.11e3 (p=1) 2017-11-14 09:45:27,399 [DEBUG] unimproved gap 2017-11-14 09:45:27,400 [DEBUG] Moving from ref0387590.11e3 to ref0387590.11e5 (p=1) 2017-11-14 09:45:27,400 [DEBUG] contig 2017-11-14 09:45:27,400 [DEBUG] who? ref0387590.11e5 ref0387590.11e3 2017-11-14 09:45:27,400 [DEBUG] Grabbing contig between nodes ref0387590.11e5 & ref0387590.11e3 - [trim 0, 0] 2017-11-14 09:45:27,400 [DEBUG] contig 7601 to 8329 2017-11-14 09:45:27,400 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,400 [DEBUG] Moving from ref0387590.11e5 to ref0387590.10e3 (p=1) 2017-11-14 09:45:27,400 [DEBUG] unimproved gap 2017-11-14 09:45:27,400 [DEBUG] Moving from ref0387590.10e3 to ref0387590.10e5 (p=1) 2017-11-14 09:45:27,400 [DEBUG] contig 2017-11-14 09:45:27,400 [DEBUG] who? ref0387590.10e5 ref0387590.10e3 2017-11-14 09:45:27,400 [DEBUG] Grabbing contig between nodes ref0387590.10e5 & ref0387590.10e3 - [trim 0, 0] 2017-11-14 09:45:27,400 [DEBUG] contig 6745 to 7294 2017-11-14 09:45:27,401 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,401 [DEBUG] Moving from ref0387590.10e5 to ref0387590.9e3 (p=1) 2017-11-14 09:45:27,401 [DEBUG] unimproved gap 2017-11-14 09:45:27,401 [DEBUG] Moving from ref0387590.9e3 to ref0387590.9e5 (p=1) 2017-11-14 09:45:27,401 [DEBUG] contig 2017-11-14 09:45:27,401 [DEBUG] who? ref0387590.9e5 ref0387590.9e3 2017-11-14 09:45:27,401 [DEBUG] Grabbing contig between nodes ref0387590.9e5 & ref0387590.9e3 - [trim 0, 0] 2017-11-14 09:45:27,401 [DEBUG] contig 6621 to 6663 2017-11-14 09:45:27,401 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,401 [DEBUG] Moving from ref0387590.9e5 to ref0387590.8e3 (p=1) 2017-11-14 09:45:27,401 [DEBUG] unimproved gap 2017-11-14 09:45:27,401 [DEBUG] Moving from ref0387590.8e3 to ref0387590.8e5 (p=1) 2017-11-14 09:45:27,401 [DEBUG] contig 2017-11-14 09:45:27,402 [DEBUG] who? ref0387590.8e5 ref0387590.8e3 2017-11-14 09:45:27,402 [DEBUG] Grabbing contig between nodes ref0387590.8e5 & ref0387590.8e3 - [trim 0, 0] 2017-11-14 09:45:27,402 [DEBUG] contig 6317 to 6371 2017-11-14 09:45:27,402 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,402 [DEBUG] Moving from ref0387590.8e5 to ref0387590.7e3 (p=1) 2017-11-14 09:45:27,402 [DEBUG] unimproved gap 2017-11-14 09:45:27,402 [DEBUG] Moving from ref0387590.7e3 to ref0387590.7e5 (p=1) 2017-11-14 09:45:27,402 [DEBUG] contig 2017-11-14 09:45:27,402 [DEBUG] who? ref0387590.7e5 ref0387590.7e3 2017-11-14 09:45:27,402 [DEBUG] Grabbing contig between nodes ref0387590.7e5 & ref0387590.7e3 - [trim 0, 0] 2017-11-14 09:45:27,402 [DEBUG] contig 6091 to 6278 2017-11-14 09:45:27,402 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,402 [DEBUG] Moving from ref0387590.7e5 to ref0387590.6e3 (p=1) 2017-11-14 09:45:27,402 [DEBUG] unimproved gap 2017-11-14 09:45:27,403 [DEBUG] Moving from ref0387590.6e3 to ref0387590.6e5 (p=1) 2017-11-14 09:45:27,403 [DEBUG] contig 2017-11-14 09:45:27,403 [DEBUG] who? ref0387590.6e5 ref0387590.6e3 2017-11-14 09:45:27,403 [DEBUG] Grabbing contig between nodes ref0387590.6e5 & ref0387590.6e3 - [trim 0, 0] 2017-11-14 09:45:27,403 [DEBUG] contig 5126 to 5618 2017-11-14 09:45:27,403 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,403 [DEBUG] Moving from ref0387590.6e5 to ref0387590.5e3 (p=1) 2017-11-14 09:45:27,403 [DEBUG] unimproved gap 2017-11-14 09:45:27,403 [DEBUG] Moving from ref0387590.5e3 to ref0387590.5e5 (p=1) 2017-11-14 09:45:27,403 [DEBUG] contig 2017-11-14 09:45:27,403 [DEBUG] who? ref0387590.5e5 ref0387590.5e3 2017-11-14 09:45:27,403 [DEBUG] Grabbing contig between nodes ref0387590.5e5 & ref0387590.5e3 - [trim 0, 0] 2017-11-14 09:45:27,403 [DEBUG] contig 4780 to 4867 2017-11-14 09:45:27,404 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,404 [DEBUG] Moving from ref0387590.5e5 to ref0387590.4e3 (p=1) 2017-11-14 09:45:27,404 [DEBUG] unimproved gap 2017-11-14 09:45:27,404 [DEBUG] Moving from ref0387590.4e3 to ref0387590.4e5 (p=1) 2017-11-14 09:45:27,404 [DEBUG] contig 2017-11-14 09:45:27,404 [DEBUG] who? ref0387590.4e5 ref0387590.4e3 2017-11-14 09:45:27,404 [DEBUG] Grabbing contig between nodes ref0387590.4e5 & ref0387590.4e3 - [trim 0, 0] 2017-11-14 09:45:27,404 [DEBUG] contig 4039 to 4559 2017-11-14 09:45:27,404 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,404 [DEBUG] Moving from ref0387590.4e5 to ref0387590.3e3 (p=1) 2017-11-14 09:45:27,404 [DEBUG] unimproved gap 2017-11-14 09:45:27,404 [DEBUG] Moving from ref0387590.3e3 to ref0387590.3e5 (p=1) 2017-11-14 09:45:27,404 [DEBUG] contig 2017-11-14 09:45:27,405 [DEBUG] who? ref0387590.3e5 ref0387590.3e3 2017-11-14 09:45:27,405 [DEBUG] Grabbing contig between nodes ref0387590.3e5 & ref0387590.3e3 - [trim 0, 0] 2017-11-14 09:45:27,405 [DEBUG] contig 3875 to 3919 2017-11-14 09:45:27,405 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,405 [DEBUG] Moving from ref0387590.3e5 to ref0387590.2e3 (p=1) 2017-11-14 09:45:27,405 [DEBUG] unimproved gap 2017-11-14 09:45:27,405 [DEBUG] Moving from ref0387590.2e3 to ref0387590.2e5 (p=1) 2017-11-14 09:45:27,405 [DEBUG] contig 2017-11-14 09:45:27,405 [DEBUG] who? ref0387590.2e5 ref0387590.2e3 2017-11-14 09:45:27,405 [DEBUG] Grabbing contig between nodes ref0387590.2e5 & ref0387590.2e3 - [trim 0, 0] 2017-11-14 09:45:27,405 [DEBUG] contig 3059 to 3487 2017-11-14 09:45:27,405 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,405 [DEBUG] Moving from ref0387590.2e5 to ref0387590.1e3 (p=1) 2017-11-14 09:45:27,405 [DEBUG] unimproved gap 2017-11-14 09:45:27,406 [DEBUG] Moving from ref0387590.1e3 to ref0387590.1e5 (p=1) 2017-11-14 09:45:27,406 [DEBUG] contig 2017-11-14 09:45:27,406 [DEBUG] who? ref0387590.1e5 ref0387590.1e3 2017-11-14 09:45:27,406 [DEBUG] Grabbing contig between nodes ref0387590.1e5 & ref0387590.1e3 - [trim 0, 0] 2017-11-14 09:45:27,406 [DEBUG] contig 857 to 2768 2017-11-14 09:45:27,406 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,406 [DEBUG] Moving from ref0387590.1e5 to ref0387590.0e3 (p=1) 2017-11-14 09:45:27,406 [DEBUG] unimproved gap 2017-11-14 09:45:27,406 [DEBUG] Moving from ref0387590.0e3 to ref0387590e5 (p=1) 2017-11-14 09:45:27,406 [DEBUG] contig 2017-11-14 09:45:27,406 [DEBUG] who? ref0387590e5 ref0387590.0e3 2017-11-14 09:45:27,406 [DEBUG] Grabbing contig between nodes ref0387590e5 & ref0387590.0e3 - [trim 0, 0] 2017-11-14 09:45:27,406 [DEBUG] contig 0 to 559 2017-11-14 09:45:27,406 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,407 [DEBUG] FirstFlipping 4 2017-11-14 09:45:27,407 [DEBUG] Contig 5 2017-11-14 09:45:27,411 [DEBUG] Moving from ref0353440e5 to ref0353440.0e3 (p=1) 2017-11-14 09:45:27,411 [DEBUG] contig 2017-11-14 09:45:27,411 [DEBUG] who? ref0353440e5 ref0353440.0e3 2017-11-14 09:45:27,411 [DEBUG] Grabbing contig between nodes ref0353440e5 & ref0353440.0e3 - [trim 0, 0] 2017-11-14 09:45:27,411 [DEBUG] contig 0 to 178 2017-11-14 09:45:27,411 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,411 [DEBUG] Moving from ref0353440.0e3 to ref0353440.1e5 (p=1) 2017-11-14 09:45:27,411 [DEBUG] unimproved gap 2017-11-14 09:45:27,411 [DEBUG] Moving from ref0353440.1e5 to ref0353440.1e3 (p=1) 2017-11-14 09:45:27,411 [DEBUG] contig 2017-11-14 09:45:27,411 [DEBUG] who? ref0353440.1e5 ref0353440.1e3 2017-11-14 09:45:27,411 [DEBUG] Grabbing contig between nodes ref0353440.1e5 & ref0353440.1e3 - [trim 0, 0] 2017-11-14 09:45:27,411 [DEBUG] contig 662 to 775 2017-11-14 09:45:27,412 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,412 [DEBUG] Moving from ref0353440.1e3 to ref0353440.2e5 (p=1) 2017-11-14 09:45:27,412 [DEBUG] unimproved gap 2017-11-14 09:45:27,412 [DEBUG] Moving from ref0353440.2e5 to ref0353440.2e3 (p=1) 2017-11-14 09:45:27,412 [DEBUG] contig 2017-11-14 09:45:27,412 [DEBUG] who? ref0353440.2e5 ref0353440.2e3 2017-11-14 09:45:27,412 [DEBUG] Grabbing contig between nodes ref0353440.2e5 & ref0353440.2e3 - [trim 0, 0] 2017-11-14 09:45:27,412 [DEBUG] contig 923 to 1164 2017-11-14 09:45:27,412 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,412 [DEBUG] Moving from ref0353440.2e3 to ref0353440.3e5 (p=1) 2017-11-14 09:45:27,412 [DEBUG] unimproved gap 2017-11-14 09:45:27,412 [DEBUG] Moving from ref0353440.3e5 to ref0353440.3e3 (p=1) 2017-11-14 09:45:27,412 [DEBUG] contig 2017-11-14 09:45:27,413 [DEBUG] who? ref0353440.3e5 ref0353440.3e3 2017-11-14 09:45:27,413 [DEBUG] Grabbing contig between nodes ref0353440.3e5 & ref0353440.3e3 - [trim 0, 0] 2017-11-14 09:45:27,413 [DEBUG] contig 1438 to 1926 2017-11-14 09:45:27,413 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,413 [DEBUG] Moving from ref0353440.3e3 to ref0353440.4e5 (p=1) 2017-11-14 09:45:27,413 [DEBUG] unimproved gap 2017-11-14 09:45:27,413 [DEBUG] Moving from ref0353440.4e5 to ref0353440.4e3 (p=1) 2017-11-14 09:45:27,413 [DEBUG] contig 2017-11-14 09:45:27,413 [DEBUG] who? ref0353440.4e5 ref0353440.4e3 2017-11-14 09:45:27,413 [DEBUG] Grabbing contig between nodes ref0353440.4e5 & ref0353440.4e3 - [trim 0, 0] 2017-11-14 09:45:27,413 [DEBUG] contig 2126 to 2686 2017-11-14 09:45:27,413 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,413 [DEBUG] Moving from ref0353440.4e3 to ref0353440.5e5 (p=1) 2017-11-14 09:45:27,414 [DEBUG] unimproved gap 2017-11-14 09:45:27,414 [DEBUG] Moving from ref0353440.5e5 to ref0353440.5e3 (p=1) 2017-11-14 09:45:27,414 [DEBUG] contig 2017-11-14 09:45:27,414 [DEBUG] who? ref0353440.5e5 ref0353440.5e3 2017-11-14 09:45:27,414 [DEBUG] Grabbing contig between nodes ref0353440.5e5 & ref0353440.5e3 - [trim 0, 0] 2017-11-14 09:45:27,414 [DEBUG] contig 2718 to 4204 2017-11-14 09:45:27,414 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,414 [DEBUG] Moving from ref0353440.5e3 to ref0353440.6e5 (p=1) 2017-11-14 09:45:27,414 [DEBUG] unimproved gap 2017-11-14 09:45:27,414 [DEBUG] Moving from ref0353440.6e5 to ref0353440.6e3 (p=1) 2017-11-14 09:45:27,414 [DEBUG] contig 2017-11-14 09:45:27,414 [DEBUG] who? ref0353440.6e5 ref0353440.6e3 2017-11-14 09:45:27,414 [DEBUG] Grabbing contig between nodes ref0353440.6e5 & ref0353440.6e3 - [trim 0, 0] 2017-11-14 09:45:27,415 [DEBUG] contig 4275 to 4394 2017-11-14 09:45:27,415 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,415 [DEBUG] Moving from ref0353440.6e3 to ref0353440.7e5 (p=1) 2017-11-14 09:45:27,415 [DEBUG] unimproved gap 2017-11-14 09:45:27,415 [DEBUG] Moving from ref0353440.7e5 to ref0353440.7e3 (p=1) 2017-11-14 09:45:27,415 [DEBUG] contig 2017-11-14 09:45:27,415 [DEBUG] who? ref0353440.7e5 ref0353440.7e3 2017-11-14 09:45:27,415 [DEBUG] Grabbing contig between nodes ref0353440.7e5 & ref0353440.7e3 - [trim 0, 0] 2017-11-14 09:45:27,415 [DEBUG] contig 4460 to 4687 2017-11-14 09:45:27,415 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,415 [DEBUG] Moving from ref0353440.7e3 to ref0353440.8e5 (p=1) 2017-11-14 09:45:27,415 [DEBUG] unimproved gap 2017-11-14 09:45:27,415 [DEBUG] Moving from ref0353440.8e5 to ref0353440.8e3 (p=1) 2017-11-14 09:45:27,416 [DEBUG] contig 2017-11-14 09:45:27,416 [DEBUG] who? ref0353440.8e5 ref0353440.8e3 2017-11-14 09:45:27,416 [DEBUG] Grabbing contig between nodes ref0353440.8e5 & ref0353440.8e3 - [trim 0, 0] 2017-11-14 09:45:27,416 [DEBUG] contig 4819 to 5254 2017-11-14 09:45:27,416 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,416 [DEBUG] Moving from ref0353440.8e3 to ref0353440.9e5 (p=1) 2017-11-14 09:45:27,416 [DEBUG] unimproved gap 2017-11-14 09:45:27,416 [DEBUG] Moving from ref0353440.9e5 to ref0353440.9e3 (p=1) 2017-11-14 09:45:27,416 [DEBUG] contig 2017-11-14 09:45:27,416 [DEBUG] who? ref0353440.9e5 ref0353440.9e3 2017-11-14 09:45:27,416 [DEBUG] Grabbing contig between nodes ref0353440.9e5 & ref0353440.9e3 - [trim 0, 0] 2017-11-14 09:45:27,416 [DEBUG] contig 5378 to 5421 2017-11-14 09:45:27,416 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,417 [DEBUG] Moving from ref0353440.9e3 to ref0353440.10e5 (p=1) 2017-11-14 09:45:27,417 [DEBUG] unimproved gap 2017-11-14 09:45:27,417 [DEBUG] Moving from ref0353440.10e5 to ref0353440.10e3 (p=1) 2017-11-14 09:45:27,417 [DEBUG] contig 2017-11-14 09:45:27,417 [DEBUG] who? ref0353440.10e5 ref0353440.10e3 2017-11-14 09:45:27,417 [DEBUG] Grabbing contig between nodes ref0353440.10e5 & ref0353440.10e3 - [trim 0, 0] 2017-11-14 09:45:27,417 [DEBUG] contig 5572 to 5600 2017-11-14 09:45:27,417 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,417 [DEBUG] Moving from ref0353440.10e3 to ref0353440.11e5 (p=1) 2017-11-14 09:45:27,417 [DEBUG] unimproved gap 2017-11-14 09:45:27,417 [DEBUG] Moving from ref0353440.11e5 to ref0353440.11e3 (p=1) 2017-11-14 09:45:27,417 [DEBUG] contig 2017-11-14 09:45:27,417 [DEBUG] who? ref0353440.11e5 ref0353440.11e3 2017-11-14 09:45:27,418 [DEBUG] Grabbing contig between nodes ref0353440.11e5 & ref0353440.11e3 - [trim 0, 0] 2017-11-14 09:45:27,418 [DEBUG] contig 5781 to 5880 2017-11-14 09:45:27,418 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,418 [DEBUG] Moving from ref0353440.11e3 to ref0353440.12e5 (p=1) 2017-11-14 09:45:27,418 [DEBUG] unimproved gap 2017-11-14 09:45:27,418 [DEBUG] Moving from ref0353440.12e5 to ref0353440.12e3 (p=1) 2017-11-14 09:45:27,418 [DEBUG] contig 2017-11-14 09:45:27,418 [DEBUG] who? ref0353440.12e5 ref0353440.12e3 2017-11-14 09:45:27,418 [DEBUG] Grabbing contig between nodes ref0353440.12e5 & ref0353440.12e3 - [trim 0, 0] 2017-11-14 09:45:27,418 [DEBUG] contig 6239 to 6749 2017-11-14 09:45:27,418 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,418 [DEBUG] Moving from ref0353440.12e3 to ref0353440.13e5 (p=1) 2017-11-14 09:45:27,419 [DEBUG] unimproved gap 2017-11-14 09:45:27,419 [DEBUG] Moving from ref0353440.13e5 to ref0353440.13e3 (p=1) 2017-11-14 09:45:27,419 [DEBUG] contig 2017-11-14 09:45:27,419 [DEBUG] who? ref0353440.13e5 ref0353440.13e3 2017-11-14 09:45:27,419 [DEBUG] Grabbing contig between nodes ref0353440.13e5 & ref0353440.13e3 - [trim 0, 0] 2017-11-14 09:45:27,419 [DEBUG] contig 6880 to 7006 2017-11-14 09:45:27,419 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,419 [DEBUG] Moving from ref0353440.13e3 to ref0353440.14e5 (p=1) 2017-11-14 09:45:27,419 [DEBUG] unimproved gap 2017-11-14 09:45:27,419 [DEBUG] Moving from ref0353440.14e5 to ref0353440.14e3 (p=1) 2017-11-14 09:45:27,419 [DEBUG] contig 2017-11-14 09:45:27,419 [DEBUG] who? ref0353440.14e5 ref0353440.14e3 2017-11-14 09:45:27,419 [DEBUG] Grabbing contig between nodes ref0353440.14e5 & ref0353440.14e3 - [trim 0, 0] 2017-11-14 09:45:27,420 [DEBUG] contig 7060 to 7217 2017-11-14 09:45:27,420 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,420 [DEBUG] Moving from ref0353440.14e3 to ref0353440.15e5 (p=1) 2017-11-14 09:45:27,420 [DEBUG] unimproved gap 2017-11-14 09:45:27,420 [DEBUG] Moving from ref0353440.15e5 to ref0353440.15e3 (p=1) 2017-11-14 09:45:27,420 [DEBUG] contig 2017-11-14 09:45:27,420 [DEBUG] who? ref0353440.15e5 ref0353440.15e3 2017-11-14 09:45:27,420 [DEBUG] Grabbing contig between nodes ref0353440.15e5 & ref0353440.15e3 - [trim 0, 0] 2017-11-14 09:45:27,420 [DEBUG] contig 7248 to 7455 2017-11-14 09:45:27,420 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,420 [DEBUG] Moving from ref0353440.15e3 to ref0353440.16e5 (p=1) 2017-11-14 09:45:27,420 [DEBUG] unimproved gap 2017-11-14 09:45:27,420 [DEBUG] Moving from ref0353440.16e5 to ref0353440.16e3 (p=1) 2017-11-14 09:45:27,421 [DEBUG] contig 2017-11-14 09:45:27,421 [DEBUG] who? ref0353440.16e5 ref0353440.16e3 2017-11-14 09:45:27,421 [DEBUG] Grabbing contig between nodes ref0353440.16e5 & ref0353440.16e3 - [trim 0, 0] 2017-11-14 09:45:27,421 [DEBUG] contig 7636 to 7680 2017-11-14 09:45:27,421 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,421 [DEBUG] Moving from ref0353440.16e3 to ref0353440.17e5 (p=1) 2017-11-14 09:45:27,421 [DEBUG] unimproved gap 2017-11-14 09:45:27,421 [DEBUG] Moving from ref0353440.17e5 to ref0353440.17e3 (p=1) 2017-11-14 09:45:27,421 [DEBUG] contig 2017-11-14 09:45:27,421 [DEBUG] who? ref0353440.17e5 ref0353440.17e3 2017-11-14 09:45:27,421 [DEBUG] Grabbing contig between nodes ref0353440.17e5 & ref0353440.17e3 - [trim 0, 0] 2017-11-14 09:45:27,421 [DEBUG] contig 7746 to 7802 2017-11-14 09:45:27,421 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,421 [DEBUG] Moving from ref0353440.17e3 to ref0353440.18e5 (p=1) 2017-11-14 09:45:27,422 [DEBUG] unimproved gap 2017-11-14 09:45:27,422 [DEBUG] Moving from ref0353440.18e5 to ref0353440.18e3 (p=1) 2017-11-14 09:45:27,422 [DEBUG] contig 2017-11-14 09:45:27,422 [DEBUG] who? ref0353440.18e5 ref0353440.18e3 2017-11-14 09:45:27,422 [DEBUG] Grabbing contig between nodes ref0353440.18e5 & ref0353440.18e3 - [trim 0, 0] 2017-11-14 09:45:27,422 [DEBUG] contig 7834 to 8175 2017-11-14 09:45:27,422 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,422 [DEBUG] Moving from ref0353440.18e3 to ref0353440.19e5 (p=1) 2017-11-14 09:45:27,422 [DEBUG] unimproved gap 2017-11-14 09:45:27,422 [DEBUG] Moving from ref0353440.19e5 to ref0353440.19e3 (p=1) 2017-11-14 09:45:27,422 [DEBUG] contig 2017-11-14 09:45:27,422 [DEBUG] who? ref0353440.19e5 ref0353440.19e3 2017-11-14 09:45:27,422 [DEBUG] Grabbing contig between nodes ref0353440.19e5 & ref0353440.19e3 - [trim 0, 0] 2017-11-14 09:45:27,423 [DEBUG] contig 8225 to 8336 2017-11-14 09:45:27,423 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,423 [DEBUG] Moving from ref0353440.19e3 to ref0353440.20e5 (p=1) 2017-11-14 09:45:27,423 [DEBUG] unimproved gap 2017-11-14 09:45:27,423 [DEBUG] Moving from ref0353440.20e5 to ref0353440.20e3 (p=1) 2017-11-14 09:45:27,423 [DEBUG] contig 2017-11-14 09:45:27,423 [DEBUG] who? ref0353440.20e5 ref0353440.20e3 2017-11-14 09:45:27,423 [DEBUG] Grabbing contig between nodes ref0353440.20e5 & ref0353440.20e3 - [trim 0, 0] 2017-11-14 09:45:27,423 [DEBUG] contig 8414 to 9353 2017-11-14 09:45:27,423 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,423 [DEBUG] Moving from ref0353440.20e3 to ref0353440.21e5 (p=1) 2017-11-14 09:45:27,423 [DEBUG] unimproved gap 2017-11-14 09:45:27,423 [DEBUG] Moving from ref0353440.21e5 to ref0353440.21e3 (p=1) 2017-11-14 09:45:27,423 [DEBUG] contig 2017-11-14 09:45:27,424 [DEBUG] who? ref0353440.21e5 ref0353440.21e3 2017-11-14 09:45:27,424 [DEBUG] Grabbing contig between nodes ref0353440.21e5 & ref0353440.21e3 - [trim 0, 0] 2017-11-14 09:45:27,424 [DEBUG] contig 9613 to 10842 2017-11-14 09:45:27,424 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,424 [DEBUG] Moving from ref0353440.21e3 to ref0353440.22e5 (p=1) 2017-11-14 09:45:27,424 [DEBUG] unimproved gap 2017-11-14 09:45:27,424 [DEBUG] Moving from ref0353440.22e5 to ref0353440.22e3 (p=1) 2017-11-14 09:45:27,424 [DEBUG] contig 2017-11-14 09:45:27,424 [DEBUG] who? ref0353440.22e5 ref0353440.22e3 2017-11-14 09:45:27,424 [DEBUG] Grabbing contig between nodes ref0353440.22e5 & ref0353440.22e3 - [trim 0, 0] 2017-11-14 09:45:27,424 [DEBUG] contig 10955 to 11248 2017-11-14 09:45:27,424 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,424 [DEBUG] Moving from ref0353440.22e3 to ref0353440.23e5 (p=1) 2017-11-14 09:45:27,425 [DEBUG] unimproved gap 2017-11-14 09:45:27,425 [DEBUG] Moving from ref0353440.23e5 to ref0353440.23e3 (p=1) 2017-11-14 09:45:27,425 [DEBUG] contig 2017-11-14 09:45:27,425 [DEBUG] who? ref0353440.23e5 ref0353440.23e3 2017-11-14 09:45:27,425 [DEBUG] Grabbing contig between nodes ref0353440.23e5 & ref0353440.23e3 - [trim 0, 0] 2017-11-14 09:45:27,425 [DEBUG] contig 11602 to 12104 2017-11-14 09:45:27,425 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,425 [DEBUG] Moving from ref0353440.23e3 to ref0353440.24e5 (p=1) 2017-11-14 09:45:27,425 [DEBUG] unimproved gap 2017-11-14 09:45:27,425 [DEBUG] Moving from ref0353440.24e5 to ref0353440e3 (p=1) 2017-11-14 09:45:27,425 [DEBUG] contig 2017-11-14 09:45:27,425 [DEBUG] who? ref0353440.24e5 ref0353440e3 2017-11-14 09:45:27,425 [DEBUG] Grabbing contig between nodes ref0353440.24e5 & ref0353440e3 - [trim 0, 0] 2017-11-14 09:45:27,426 [DEBUG] contig 12358 to 12726 2017-11-14 09:45:27,426 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,426 [DEBUG] Contig 6 2017-11-14 09:45:27,429 [DEBUG] Moving from ref0163593e5 to ref0163593.0e3 (p=1) 2017-11-14 09:45:27,429 [DEBUG] contig 2017-11-14 09:45:27,429 [DEBUG] who? ref0163593e5 ref0163593.0e3 2017-11-14 09:45:27,429 [DEBUG] Grabbing contig between nodes ref0163593e5 & ref0163593.0e3 - [trim 0, 0] 2017-11-14 09:45:27,430 [DEBUG] contig 0 to 387 2017-11-14 09:45:27,430 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,430 [DEBUG] Moving from ref0163593.0e3 to ref0163593.1e5 (p=1) 2017-11-14 09:45:27,430 [DEBUG] unimproved gap 2017-11-14 09:45:27,430 [DEBUG] Moving from ref0163593.1e5 to ref0163593.1e3 (p=1) 2017-11-14 09:45:27,430 [DEBUG] contig 2017-11-14 09:45:27,430 [DEBUG] who? ref0163593.1e5 ref0163593.1e3 2017-11-14 09:45:27,430 [DEBUG] Grabbing contig between nodes ref0163593.1e5 & ref0163593.1e3 - [trim 0, 0] 2017-11-14 09:45:27,430 [DEBUG] contig 423 to 1181 2017-11-14 09:45:27,430 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,430 [DEBUG] Moving from ref0163593.1e3 to ref0163593.2e5 (p=1) 2017-11-14 09:45:27,430 [DEBUG] unimproved gap 2017-11-14 09:45:27,430 [DEBUG] Moving from ref0163593.2e5 to ref0163593.2e3 (p=1) 2017-11-14 09:45:27,430 [DEBUG] contig 2017-11-14 09:45:27,431 [DEBUG] who? ref0163593.2e5 ref0163593.2e3 2017-11-14 09:45:27,431 [DEBUG] Grabbing contig between nodes ref0163593.2e5 & ref0163593.2e3 - [trim 0, 0] 2017-11-14 09:45:27,431 [DEBUG] contig 1312 to 3306 2017-11-14 09:45:27,431 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,431 [DEBUG] Moving from ref0163593.2e3 to ref0163593.3e5 (p=1) 2017-11-14 09:45:27,431 [DEBUG] unimproved gap 2017-11-14 09:45:27,431 [DEBUG] Moving from ref0163593.3e5 to ref0163593.3e3 (p=1) 2017-11-14 09:45:27,431 [DEBUG] contig 2017-11-14 09:45:27,431 [DEBUG] who? ref0163593.3e5 ref0163593.3e3 2017-11-14 09:45:27,431 [DEBUG] Grabbing contig between nodes ref0163593.3e5 & ref0163593.3e3 - [trim 0, 0] 2017-11-14 09:45:27,431 [DEBUG] contig 3855 to 4018 2017-11-14 09:45:27,431 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,431 [DEBUG] Moving from ref0163593.3e3 to ref0163593.4e5 (p=1) 2017-11-14 09:45:27,432 [DEBUG] unimproved gap 2017-11-14 09:45:27,432 [DEBUG] Moving from ref0163593.4e5 to ref0163593.4e3 (p=1) 2017-11-14 09:45:27,432 [DEBUG] contig 2017-11-14 09:45:27,432 [DEBUG] who? ref0163593.4e5 ref0163593.4e3 2017-11-14 09:45:27,432 [DEBUG] Grabbing contig between nodes ref0163593.4e5 & ref0163593.4e3 - [trim 0, 0] 2017-11-14 09:45:27,432 [DEBUG] contig 4399 to 5799 2017-11-14 09:45:27,432 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,432 [DEBUG] Moving from ref0163593.4e3 to ref0163593.5e5 (p=1) 2017-11-14 09:45:27,432 [DEBUG] unimproved gap 2017-11-14 09:45:27,432 [DEBUG] Moving from ref0163593.5e5 to ref0163593.5e3 (p=1) 2017-11-14 09:45:27,432 [DEBUG] contig 2017-11-14 09:45:27,432 [DEBUG] who? ref0163593.5e5 ref0163593.5e3 2017-11-14 09:45:27,432 [DEBUG] Grabbing contig between nodes ref0163593.5e5 & ref0163593.5e3 - [trim 0, 0] 2017-11-14 09:45:27,433 [DEBUG] contig 5977 to 6006 2017-11-14 09:45:27,433 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,433 [DEBUG] Moving from ref0163593.5e3 to ref0163593.6e5 (p=1) 2017-11-14 09:45:27,433 [DEBUG] unimproved gap 2017-11-14 09:45:27,433 [DEBUG] Moving from ref0163593.6e5 to ref0163593.6e3 (p=1) 2017-11-14 09:45:27,433 [DEBUG] contig 2017-11-14 09:45:27,433 [DEBUG] who? ref0163593.6e5 ref0163593.6e3 2017-11-14 09:45:27,433 [DEBUG] Grabbing contig between nodes ref0163593.6e5 & ref0163593.6e3 - [trim 0, 0] 2017-11-14 09:45:27,433 [DEBUG] contig 6150 to 6205 2017-11-14 09:45:27,433 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,433 [DEBUG] Moving from ref0163593.6e3 to ref0163593.7e5 (p=1) 2017-11-14 09:45:27,433 [DEBUG] unimproved gap 2017-11-14 09:45:27,433 [DEBUG] Moving from ref0163593.7e5 to ref0163593.7e3 (p=1) 2017-11-14 09:45:27,434 [DEBUG] contig 2017-11-14 09:45:27,434 [DEBUG] who? ref0163593.7e5 ref0163593.7e3 2017-11-14 09:45:27,434 [DEBUG] Grabbing contig between nodes ref0163593.7e5 & ref0163593.7e3 - [trim 0, 0] 2017-11-14 09:45:27,434 [DEBUG] contig 6521 to 6559 2017-11-14 09:45:27,434 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,434 [DEBUG] Moving from ref0163593.7e3 to ref0163593.8e5 (p=1) 2017-11-14 09:45:27,434 [DEBUG] unimproved gap 2017-11-14 09:45:27,434 [DEBUG] Moving from ref0163593.8e5 to ref0163593.8e3 (p=1) 2017-11-14 09:45:27,434 [DEBUG] contig 2017-11-14 09:45:27,434 [DEBUG] who? ref0163593.8e5 ref0163593.8e3 2017-11-14 09:45:27,434 [DEBUG] Grabbing contig between nodes ref0163593.8e5 & ref0163593.8e3 - [trim 0, 0] 2017-11-14 09:45:27,434 [DEBUG] contig 6789 to 7241 2017-11-14 09:45:27,434 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,435 [DEBUG] Moving from ref0163593.8e3 to ref0163593.9e5 (p=1) 2017-11-14 09:45:27,435 [DEBUG] unimproved gap 2017-11-14 09:45:27,435 [DEBUG] Moving from ref0163593.9e5 to ref0163593.9e3 (p=1) 2017-11-14 09:45:27,435 [DEBUG] contig 2017-11-14 09:45:27,435 [DEBUG] who? ref0163593.9e5 ref0163593.9e3 2017-11-14 09:45:27,435 [DEBUG] Grabbing contig between nodes ref0163593.9e5 & ref0163593.9e3 - [trim 0, 0] 2017-11-14 09:45:27,435 [DEBUG] contig 7571 to 15778 2017-11-14 09:45:27,435 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,435 [DEBUG] Moving from ref0163593.9e3 to ref0163593.10e5 (p=1) 2017-11-14 09:45:27,435 [DEBUG] unimproved gap 2017-11-14 09:45:27,435 [DEBUG] Moving from ref0163593.10e5 to ref0163593.10e3 (p=1) 2017-11-14 09:45:27,435 [DEBUG] contig 2017-11-14 09:45:27,435 [DEBUG] who? ref0163593.10e5 ref0163593.10e3 2017-11-14 09:45:27,435 [DEBUG] Grabbing contig between nodes ref0163593.10e5 & ref0163593.10e3 - [trim 0, 0] 2017-11-14 09:45:27,436 [DEBUG] contig 15942 to 17317 2017-11-14 09:45:27,436 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,436 [DEBUG] Moving from ref0163593.10e3 to ref0163593.11e5 (p=1) 2017-11-14 09:45:27,436 [DEBUG] unimproved gap 2017-11-14 09:45:27,436 [DEBUG] Moving from ref0163593.11e5 to ref0163593.11e3 (p=1) 2017-11-14 09:45:27,436 [DEBUG] contig 2017-11-14 09:45:27,436 [DEBUG] who? ref0163593.11e5 ref0163593.11e3 2017-11-14 09:45:27,436 [DEBUG] Grabbing contig between nodes ref0163593.11e5 & ref0163593.11e3 - [trim 0, 0] 2017-11-14 09:45:27,436 [DEBUG] contig 17354 to 17668 2017-11-14 09:45:27,436 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,436 [DEBUG] Moving from ref0163593.11e3 to ref0163593.12e5 (p=1) 2017-11-14 09:45:27,436 [DEBUG] unimproved gap 2017-11-14 09:45:27,437 [DEBUG] Moving from ref0163593.12e5 to ref0163593.12e3 (p=1) 2017-11-14 09:45:27,437 [DEBUG] contig 2017-11-14 09:45:27,437 [DEBUG] who? ref0163593.12e5 ref0163593.12e3 2017-11-14 09:45:27,437 [DEBUG] Grabbing contig between nodes ref0163593.12e5 & ref0163593.12e3 - [trim 0, 0] 2017-11-14 09:45:27,437 [DEBUG] contig 17949 to 19282 2017-11-14 09:45:27,437 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,437 [DEBUG] Moving from ref0163593.12e3 to ref0163593.13e5 (p=1) 2017-11-14 09:45:27,437 [DEBUG] unimproved gap 2017-11-14 09:45:27,437 [DEBUG] Moving from ref0163593.13e5 to ref0163593.13e3 (p=1) 2017-11-14 09:45:27,437 [DEBUG] contig 2017-11-14 09:45:27,437 [DEBUG] who? ref0163593.13e5 ref0163593.13e3 2017-11-14 09:45:27,437 [DEBUG] Grabbing contig between nodes ref0163593.13e5 & ref0163593.13e3 - [trim 0, 0] 2017-11-14 09:45:27,437 [DEBUG] contig 19432 to 20829 2017-11-14 09:45:27,437 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,438 [DEBUG] Moving from ref0163593.13e3 to ref0163593.14e5 (p=1) 2017-11-14 09:45:27,438 [DEBUG] unimproved gap 2017-11-14 09:45:27,438 [DEBUG] Moving from ref0163593.14e5 to ref0163593.14e3 (p=1) 2017-11-14 09:45:27,438 [DEBUG] contig 2017-11-14 09:45:27,438 [DEBUG] who? ref0163593.14e5 ref0163593.14e3 2017-11-14 09:45:27,438 [DEBUG] Grabbing contig between nodes ref0163593.14e5 & ref0163593.14e3 - [trim 0, 0] 2017-11-14 09:45:27,438 [DEBUG] contig 21315 to 23920 2017-11-14 09:45:27,438 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,438 [DEBUG] Moving from ref0163593.14e3 to ref0163593.15e5 (p=1) 2017-11-14 09:45:27,438 [DEBUG] unimproved gap 2017-11-14 09:45:27,438 [DEBUG] Moving from ref0163593.15e5 to ref0163593.15e3 (p=1) 2017-11-14 09:45:27,438 [DEBUG] contig 2017-11-14 09:45:27,438 [DEBUG] who? ref0163593.15e5 ref0163593.15e3 2017-11-14 09:45:27,438 [DEBUG] Grabbing contig between nodes ref0163593.15e5 & ref0163593.15e3 - [trim 0, 0] 2017-11-14 09:45:27,439 [DEBUG] contig 24257 to 25772 2017-11-14 09:45:27,439 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,439 [DEBUG] Moving from ref0163593.15e3 to ref0163593.16e5 (p=1) 2017-11-14 09:45:27,439 [DEBUG] unimproved gap 2017-11-14 09:45:27,439 [DEBUG] Moving from ref0163593.16e5 to ref0163593.16e3 (p=1) 2017-11-14 09:45:27,439 [DEBUG] contig 2017-11-14 09:45:27,439 [DEBUG] who? ref0163593.16e5 ref0163593.16e3 2017-11-14 09:45:27,439 [DEBUG] Grabbing contig between nodes ref0163593.16e5 & ref0163593.16e3 - [trim 0, 0] 2017-11-14 09:45:27,439 [DEBUG] contig 25849 to 25893 2017-11-14 09:45:27,439 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,439 [DEBUG] Moving from ref0163593.16e3 to ref0163593.17e5 (p=1) 2017-11-14 09:45:27,439 [DEBUG] unimproved gap 2017-11-14 09:45:27,439 [DEBUG] Moving from ref0163593.17e5 to ref0163593.17e3 (p=1) 2017-11-14 09:45:27,440 [DEBUG] contig 2017-11-14 09:45:27,440 [DEBUG] who? ref0163593.17e5 ref0163593.17e3 2017-11-14 09:45:27,440 [DEBUG] Grabbing contig between nodes ref0163593.17e5 & ref0163593.17e3 - [trim 0, 0] 2017-11-14 09:45:27,440 [DEBUG] contig 25966 to 26100 2017-11-14 09:45:27,440 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,440 [DEBUG] Moving from ref0163593.17e3 to ref0163593.18e5 (p=1) 2017-11-14 09:45:27,440 [DEBUG] unimproved gap 2017-11-14 09:45:27,440 [DEBUG] Moving from ref0163593.18e5 to ref0163593.18e3 (p=1) 2017-11-14 09:45:27,440 [DEBUG] contig 2017-11-14 09:45:27,440 [DEBUG] who? ref0163593.18e5 ref0163593.18e3 2017-11-14 09:45:27,440 [DEBUG] Grabbing contig between nodes ref0163593.18e5 & ref0163593.18e3 - [trim 0, 0] 2017-11-14 09:45:27,440 [DEBUG] contig 26372 to 26465 2017-11-14 09:45:27,440 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,441 [DEBUG] Moving from ref0163593.18e3 to ref0163593.19e5 (p=1) 2017-11-14 09:45:27,441 [DEBUG] unimproved gap 2017-11-14 09:45:27,441 [DEBUG] Moving from ref0163593.19e5 to ref0163593.19e3 (p=1) 2017-11-14 09:45:27,441 [DEBUG] contig 2017-11-14 09:45:27,441 [DEBUG] who? ref0163593.19e5 ref0163593.19e3 2017-11-14 09:45:27,441 [DEBUG] Grabbing contig between nodes ref0163593.19e5 & ref0163593.19e3 - [trim 0, 0] 2017-11-14 09:45:27,441 [DEBUG] contig 26722 to 26790 2017-11-14 09:45:27,441 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,441 [DEBUG] Moving from ref0163593.19e3 to ref0163593.20e5 (p=1) 2017-11-14 09:45:27,441 [DEBUG] unimproved gap 2017-11-14 09:45:27,441 [DEBUG] Moving from ref0163593.20e5 to ref0163593.20e3 (p=1) 2017-11-14 09:45:27,441 [DEBUG] contig 2017-11-14 09:45:27,441 [DEBUG] who? ref0163593.20e5 ref0163593.20e3 2017-11-14 09:45:27,441 [DEBUG] Grabbing contig between nodes ref0163593.20e5 & ref0163593.20e3 - [trim 0, 0] 2017-11-14 09:45:27,442 [DEBUG] contig 26881 to 26921 2017-11-14 09:45:27,442 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,442 [DEBUG] Moving from ref0163593.20e3 to ref0163593.21e5 (p=1) 2017-11-14 09:45:27,442 [DEBUG] unimproved gap 2017-11-14 09:45:27,442 [DEBUG] Moving from ref0163593.21e5 to ref0163593.21e3 (p=1) 2017-11-14 09:45:27,442 [DEBUG] contig 2017-11-14 09:45:27,442 [DEBUG] who? ref0163593.21e5 ref0163593.21e3 2017-11-14 09:45:27,442 [DEBUG] Grabbing contig between nodes ref0163593.21e5 & ref0163593.21e3 - [trim 0, 0] 2017-11-14 09:45:27,442 [DEBUG] contig 27050 to 28708 2017-11-14 09:45:27,442 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,442 [DEBUG] Moving from ref0163593.21e3 to ref0163593.22e5 (p=1) 2017-11-14 09:45:27,442 [DEBUG] unimproved gap 2017-11-14 09:45:27,442 [DEBUG] Moving from ref0163593.22e5 to ref0163593.22e3 (p=1) 2017-11-14 09:45:27,443 [DEBUG] contig 2017-11-14 09:45:27,443 [DEBUG] who? ref0163593.22e5 ref0163593.22e3 2017-11-14 09:45:27,443 [DEBUG] Grabbing contig between nodes ref0163593.22e5 & ref0163593.22e3 - [trim 0, 0] 2017-11-14 09:45:27,443 [DEBUG] contig 28784 to 29205 2017-11-14 09:45:27,443 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,443 [DEBUG] Moving from ref0163593.22e3 to ref0163593.23e5 (p=1) 2017-11-14 09:45:27,443 [DEBUG] unimproved gap 2017-11-14 09:45:27,443 [DEBUG] Moving from ref0163593.23e5 to ref0163593.23e3 (p=1) 2017-11-14 09:45:27,443 [DEBUG] contig 2017-11-14 09:45:27,443 [DEBUG] who? ref0163593.23e5 ref0163593.23e3 2017-11-14 09:45:27,443 [DEBUG] Grabbing contig between nodes ref0163593.23e5 & ref0163593.23e3 - [trim 0, 0] 2017-11-14 09:45:27,443 [DEBUG] contig 29285 to 32145 2017-11-14 09:45:27,443 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,443 [DEBUG] Moving from ref0163593.23e3 to ref0163593.24e5 (p=1) 2017-11-14 09:45:27,444 [DEBUG] unimproved gap 2017-11-14 09:45:27,444 [DEBUG] Moving from ref0163593.24e5 to ref0163593e3 (p=1) 2017-11-14 09:45:27,444 [DEBUG] contig 2017-11-14 09:45:27,444 [DEBUG] who? ref0163593.24e5 ref0163593e3 2017-11-14 09:45:27,444 [DEBUG] Grabbing contig between nodes ref0163593.24e5 & ref0163593e3 - [trim 0, 0] 2017-11-14 09:45:27,444 [DEBUG] contig 32300 to 33063 2017-11-14 09:45:27,444 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,444 [DEBUG] Contig 7 2017-11-14 09:45:27,447 [DEBUG] Moving from ref0352422e3 to ref0352422.23e5 (p=1) 2017-11-14 09:45:27,447 [DEBUG] contig 2017-11-14 09:45:27,448 [DEBUG] who? ref0352422.23e5 ref0352422e3 2017-11-14 09:45:27,448 [DEBUG] Grabbing contig between nodes ref0352422.23e5 & ref0352422e3 - [trim 0, 0] 2017-11-14 09:45:27,448 [DEBUG] contig 22535 to 23262 2017-11-14 09:45:27,448 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,448 [DEBUG] Moving from ref0352422.23e5 to ref0352422.22e3 (p=1) 2017-11-14 09:45:27,448 [DEBUG] unimproved gap 2017-11-14 09:45:27,448 [DEBUG] Moving from ref0352422.22e3 to ref0352422.22e5 (p=1) 2017-11-14 09:45:27,448 [DEBUG] contig 2017-11-14 09:45:27,448 [DEBUG] who? ref0352422.22e5 ref0352422.22e3 2017-11-14 09:45:27,448 [DEBUG] Grabbing contig between nodes ref0352422.22e5 & ref0352422.22e3 - [trim 0, 0] 2017-11-14 09:45:27,448 [DEBUG] contig 22427 to 22481 2017-11-14 09:45:27,448 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,448 [DEBUG] Moving from ref0352422.22e5 to ref0352422.21e3 (p=1) 2017-11-14 09:45:27,449 [DEBUG] unimproved gap 2017-11-14 09:45:27,449 [DEBUG] Moving from ref0352422.21e3 to ref0352422.21e5 (p=1) 2017-11-14 09:45:27,449 [DEBUG] contig 2017-11-14 09:45:27,449 [DEBUG] who? ref0352422.21e5 ref0352422.21e3 2017-11-14 09:45:27,449 [DEBUG] Grabbing contig between nodes ref0352422.21e5 & ref0352422.21e3 - [trim 0, 0] 2017-11-14 09:45:27,449 [DEBUG] contig 20533 to 22382 2017-11-14 09:45:27,449 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,449 [DEBUG] Moving from ref0352422.21e5 to ref0352422.20e3 (p=1) 2017-11-14 09:45:27,449 [DEBUG] unimproved gap 2017-11-14 09:45:27,449 [DEBUG] Moving from ref0352422.20e3 to ref0352422.20e5 (p=1) 2017-11-14 09:45:27,449 [DEBUG] contig 2017-11-14 09:45:27,449 [DEBUG] who? ref0352422.20e5 ref0352422.20e3 2017-11-14 09:45:27,449 [DEBUG] Grabbing contig between nodes ref0352422.20e5 & ref0352422.20e3 - [trim 0, 0] 2017-11-14 09:45:27,450 [DEBUG] contig 20403 to 20447 2017-11-14 09:45:27,450 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,450 [DEBUG] Moving from ref0352422.20e5 to ref0352422.19e3 (p=1) 2017-11-14 09:45:27,450 [DEBUG] unimproved gap 2017-11-14 09:45:27,450 [DEBUG] Moving from ref0352422.19e3 to ref0352422.19e5 (p=1) 2017-11-14 09:45:27,450 [DEBUG] contig 2017-11-14 09:45:27,450 [DEBUG] who? ref0352422.19e5 ref0352422.19e3 2017-11-14 09:45:27,450 [DEBUG] Grabbing contig between nodes ref0352422.19e5 & ref0352422.19e3 - [trim 0, 0] 2017-11-14 09:45:27,450 [DEBUG] contig 18204 to 20297 2017-11-14 09:45:27,450 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,450 [DEBUG] Moving from ref0352422.19e5 to ref0352422.18e3 (p=1) 2017-11-14 09:45:27,450 [DEBUG] unimproved gap 2017-11-14 09:45:27,450 [DEBUG] Moving from ref0352422.18e3 to ref0352422.18e5 (p=1) 2017-11-14 09:45:27,450 [DEBUG] contig 2017-11-14 09:45:27,451 [DEBUG] who? ref0352422.18e5 ref0352422.18e3 2017-11-14 09:45:27,451 [DEBUG] Grabbing contig between nodes ref0352422.18e5 & ref0352422.18e3 - [trim 0, 0] 2017-11-14 09:45:27,451 [DEBUG] contig 17395 to 18094 2017-11-14 09:45:27,451 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,451 [DEBUG] Moving from ref0352422.18e5 to ref0352422.17e3 (p=1) 2017-11-14 09:45:27,451 [DEBUG] unimproved gap 2017-11-14 09:45:27,451 [DEBUG] Moving from ref0352422.17e3 to ref0352422.17e5 (p=1) 2017-11-14 09:45:27,451 [DEBUG] contig 2017-11-14 09:45:27,451 [DEBUG] who? ref0352422.17e5 ref0352422.17e3 2017-11-14 09:45:27,451 [DEBUG] Grabbing contig between nodes ref0352422.17e5 & ref0352422.17e3 - [trim 0, 0] 2017-11-14 09:45:27,451 [DEBUG] contig 15790 to 17280 2017-11-14 09:45:27,451 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,451 [DEBUG] Moving from ref0352422.17e5 to ref0352422.16e3 (p=1) 2017-11-14 09:45:27,452 [DEBUG] unimproved gap 2017-11-14 09:45:27,452 [DEBUG] Moving from ref0352422.16e3 to ref0352422.16e5 (p=1) 2017-11-14 09:45:27,452 [DEBUG] contig 2017-11-14 09:45:27,452 [DEBUG] who? ref0352422.16e5 ref0352422.16e3 2017-11-14 09:45:27,452 [DEBUG] Grabbing contig between nodes ref0352422.16e5 & ref0352422.16e3 - [trim 0, 0] 2017-11-14 09:45:27,452 [DEBUG] contig 15496 to 15563 2017-11-14 09:45:27,452 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,452 [DEBUG] Moving from ref0352422.16e5 to ref0352422.15e3 (p=1) 2017-11-14 09:45:27,452 [DEBUG] unimproved gap 2017-11-14 09:45:27,452 [DEBUG] Moving from ref0352422.15e3 to ref0352422.15e5 (p=1) 2017-11-14 09:45:27,452 [DEBUG] contig 2017-11-14 09:45:27,452 [DEBUG] who? ref0352422.15e5 ref0352422.15e3 2017-11-14 09:45:27,452 [DEBUG] Grabbing contig between nodes ref0352422.15e5 & ref0352422.15e3 - [trim 0, 0] 2017-11-14 09:45:27,453 [DEBUG] contig 14186 to 15103 2017-11-14 09:45:27,453 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,453 [DEBUG] Moving from ref0352422.15e5 to ref0352422.14e3 (p=1) 2017-11-14 09:45:27,453 [DEBUG] unimproved gap 2017-11-14 09:45:27,453 [DEBUG] Moving from ref0352422.14e3 to ref0352422.14e5 (p=1) 2017-11-14 09:45:27,453 [DEBUG] contig 2017-11-14 09:45:27,453 [DEBUG] who? ref0352422.14e5 ref0352422.14e3 2017-11-14 09:45:27,453 [DEBUG] Grabbing contig between nodes ref0352422.14e5 & ref0352422.14e3 - [trim 0, 0] 2017-11-14 09:45:27,453 [DEBUG] contig 13630 to 13694 2017-11-14 09:45:27,453 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,453 [DEBUG] Moving from ref0352422.14e5 to ref0352422.13e3 (p=1) 2017-11-14 09:45:27,453 [DEBUG] unimproved gap 2017-11-14 09:45:27,453 [DEBUG] Moving from ref0352422.13e3 to ref0352422.13e5 (p=1) 2017-11-14 09:45:27,454 [DEBUG] contig 2017-11-14 09:45:27,454 [DEBUG] who? ref0352422.13e5 ref0352422.13e3 2017-11-14 09:45:27,454 [DEBUG] Grabbing contig between nodes ref0352422.13e5 & ref0352422.13e3 - [trim 0, 0] 2017-11-14 09:45:27,454 [DEBUG] contig 12310 to 13365 2017-11-14 09:45:27,454 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,454 [DEBUG] Moving from ref0352422.13e5 to ref0352422.12e3 (p=1) 2017-11-14 09:45:27,454 [DEBUG] unimproved gap 2017-11-14 09:45:27,454 [DEBUG] Moving from ref0352422.12e3 to ref0352422.12e5 (p=1) 2017-11-14 09:45:27,454 [DEBUG] contig 2017-11-14 09:45:27,454 [DEBUG] who? ref0352422.12e5 ref0352422.12e3 2017-11-14 09:45:27,454 [DEBUG] Grabbing contig between nodes ref0352422.12e5 & ref0352422.12e3 - [trim 0, 0] 2017-11-14 09:45:27,454 [DEBUG] contig 11765 to 12238 2017-11-14 09:45:27,455 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,455 [DEBUG] Moving from ref0352422.12e5 to ref0352422.11e3 (p=1) 2017-11-14 09:45:27,455 [DEBUG] unimproved gap 2017-11-14 09:45:27,455 [DEBUG] Moving from ref0352422.11e3 to ref0352422.11e5 (p=1) 2017-11-14 09:45:27,455 [DEBUG] contig 2017-11-14 09:45:27,455 [DEBUG] who? ref0352422.11e5 ref0352422.11e3 2017-11-14 09:45:27,455 [DEBUG] Grabbing contig between nodes ref0352422.11e5 & ref0352422.11e3 - [trim 0, 0] 2017-11-14 09:45:27,455 [DEBUG] contig 11533 to 11660 2017-11-14 09:45:27,455 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,455 [DEBUG] Moving from ref0352422.11e5 to ref0352422.10e3 (p=1) 2017-11-14 09:45:27,455 [DEBUG] unimproved gap 2017-11-14 09:45:27,455 [DEBUG] Moving from ref0352422.10e3 to ref0352422.10e5 (p=1) 2017-11-14 09:45:27,455 [DEBUG] contig 2017-11-14 09:45:27,456 [DEBUG] who? ref0352422.10e5 ref0352422.10e3 2017-11-14 09:45:27,456 [DEBUG] Grabbing contig between nodes ref0352422.10e5 & ref0352422.10e3 - [trim 0, 0] 2017-11-14 09:45:27,456 [DEBUG] contig 11421 to 11508 2017-11-14 09:45:27,456 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,456 [DEBUG] Moving from ref0352422.10e5 to ref0352422.9e3 (p=1) 2017-11-14 09:45:27,456 [DEBUG] unimproved gap 2017-11-14 09:45:27,456 [DEBUG] Moving from ref0352422.9e3 to ref0352422.9e5 (p=1) 2017-11-14 09:45:27,456 [DEBUG] contig 2017-11-14 09:45:27,456 [DEBUG] who? ref0352422.9e5 ref0352422.9e3 2017-11-14 09:45:27,456 [DEBUG] Grabbing contig between nodes ref0352422.9e5 & ref0352422.9e3 - [trim 0, 0] 2017-11-14 09:45:27,456 [DEBUG] contig 11056 to 11343 2017-11-14 09:45:27,456 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,456 [DEBUG] Moving from ref0352422.9e5 to ref0352422.8e3 (p=1) 2017-11-14 09:45:27,457 [DEBUG] unimproved gap 2017-11-14 09:45:27,457 [DEBUG] Moving from ref0352422.8e3 to ref0352422.8e5 (p=1) 2017-11-14 09:45:27,457 [DEBUG] contig 2017-11-14 09:45:27,457 [DEBUG] who? ref0352422.8e5 ref0352422.8e3 2017-11-14 09:45:27,457 [DEBUG] Grabbing contig between nodes ref0352422.8e5 & ref0352422.8e3 - [trim 0, 0] 2017-11-14 09:45:27,457 [DEBUG] contig 10722 to 10910 2017-11-14 09:45:27,457 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,457 [DEBUG] Moving from ref0352422.8e5 to ref0352422.7e3 (p=1) 2017-11-14 09:45:27,457 [DEBUG] unimproved gap 2017-11-14 09:45:27,457 [DEBUG] Moving from ref0352422.7e3 to ref0352422.7e5 (p=1) 2017-11-14 09:45:27,457 [DEBUG] contig 2017-11-14 09:45:27,457 [DEBUG] who? ref0352422.7e5 ref0352422.7e3 2017-11-14 09:45:27,457 [DEBUG] Grabbing contig between nodes ref0352422.7e5 & ref0352422.7e3 - [trim 0, 0] 2017-11-14 09:45:27,457 [DEBUG] contig 10062 to 10673 2017-11-14 09:45:27,458 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,458 [DEBUG] Moving from ref0352422.7e5 to ref0352422.6e3 (p=1) 2017-11-14 09:45:27,458 [DEBUG] unimproved gap 2017-11-14 09:45:27,458 [DEBUG] Moving from ref0352422.6e3 to ref0352422.6e5 (p=1) 2017-11-14 09:45:27,458 [DEBUG] contig 2017-11-14 09:45:27,458 [DEBUG] who? ref0352422.6e5 ref0352422.6e3 2017-11-14 09:45:27,458 [DEBUG] Grabbing contig between nodes ref0352422.6e5 & ref0352422.6e3 - [trim 0, 0] 2017-11-14 09:45:27,458 [DEBUG] contig 9722 to 9903 2017-11-14 09:45:27,458 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,458 [DEBUG] Moving from ref0352422.6e5 to ref0352422.5e3 (p=1) 2017-11-14 09:45:27,458 [DEBUG] unimproved gap 2017-11-14 09:45:27,458 [DEBUG] Moving from ref0352422.5e3 to ref0352422.5e5 (p=1) 2017-11-14 09:45:27,458 [DEBUG] contig 2017-11-14 09:45:27,459 [DEBUG] who? ref0352422.5e5 ref0352422.5e3 2017-11-14 09:45:27,459 [DEBUG] Grabbing contig between nodes ref0352422.5e5 & ref0352422.5e3 - [trim 0, 0] 2017-11-14 09:45:27,459 [DEBUG] contig 9361 to 9687 2017-11-14 09:45:27,459 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,459 [DEBUG] Moving from ref0352422.5e5 to ref0352422.4e3 (p=1) 2017-11-14 09:45:27,459 [DEBUG] unimproved gap 2017-11-14 09:45:27,459 [DEBUG] Moving from ref0352422.4e3 to ref0352422.4e5 (p=1) 2017-11-14 09:45:27,459 [DEBUG] contig 2017-11-14 09:45:27,459 [DEBUG] who? ref0352422.4e5 ref0352422.4e3 2017-11-14 09:45:27,459 [DEBUG] Grabbing contig between nodes ref0352422.4e5 & ref0352422.4e3 - [trim 0, 0] 2017-11-14 09:45:27,459 [DEBUG] contig 9097 to 9138 2017-11-14 09:45:27,459 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,459 [DEBUG] Moving from ref0352422.4e5 to ref0352422.3e3 (p=1) 2017-11-14 09:45:27,459 [DEBUG] unimproved gap 2017-11-14 09:45:27,460 [DEBUG] Moving from ref0352422.3e3 to ref0352422.3e5 (p=1) 2017-11-14 09:45:27,460 [DEBUG] contig 2017-11-14 09:45:27,460 [DEBUG] who? ref0352422.3e5 ref0352422.3e3 2017-11-14 09:45:27,460 [DEBUG] Grabbing contig between nodes ref0352422.3e5 & ref0352422.3e3 - [trim 0, 0] 2017-11-14 09:45:27,460 [DEBUG] contig 1143 to 8871 2017-11-14 09:45:27,460 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,460 [DEBUG] Moving from ref0352422.3e5 to ref0352422.2e3 (p=1) 2017-11-14 09:45:27,460 [DEBUG] unimproved gap 2017-11-14 09:45:27,460 [DEBUG] Moving from ref0352422.2e3 to ref0352422.2e5 (p=1) 2017-11-14 09:45:27,460 [DEBUG] contig 2017-11-14 09:45:27,460 [DEBUG] who? ref0352422.2e5 ref0352422.2e3 2017-11-14 09:45:27,460 [DEBUG] Grabbing contig between nodes ref0352422.2e5 & ref0352422.2e3 - [trim 0, 0] 2017-11-14 09:45:27,460 [DEBUG] contig 1010 to 1057 2017-11-14 09:45:27,461 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,461 [DEBUG] Moving from ref0352422.2e5 to ref0352422.1e3 (p=1) 2017-11-14 09:45:27,461 [DEBUG] unimproved gap 2017-11-14 09:45:27,461 [DEBUG] Moving from ref0352422.1e3 to ref0352422.1e5 (p=1) 2017-11-14 09:45:27,461 [DEBUG] contig 2017-11-14 09:45:27,461 [DEBUG] who? ref0352422.1e5 ref0352422.1e3 2017-11-14 09:45:27,461 [DEBUG] Grabbing contig between nodes ref0352422.1e5 & ref0352422.1e3 - [trim 0, 0] 2017-11-14 09:45:27,461 [DEBUG] contig 400 to 608 2017-11-14 09:45:27,461 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,461 [DEBUG] Moving from ref0352422.1e5 to ref0352422.0e3 (p=1) 2017-11-14 09:45:27,461 [DEBUG] unimproved gap 2017-11-14 09:45:27,461 [DEBUG] Moving from ref0352422.0e3 to ref0352422e5 (p=1) 2017-11-14 09:45:27,461 [DEBUG] contig 2017-11-14 09:45:27,462 [DEBUG] who? ref0352422e5 ref0352422.0e3 2017-11-14 09:45:27,462 [DEBUG] Grabbing contig between nodes ref0352422e5 & ref0352422.0e3 - [trim 0, 0] 2017-11-14 09:45:27,462 [DEBUG] contig 0 to 68 2017-11-14 09:45:27,462 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,462 [DEBUG] FirstFlipping 7 2017-11-14 09:45:27,462 [DEBUG] Contig 8 2017-11-14 09:45:27,465 [DEBUG] Moving from ref0218797e3 to ref0218797.23e5 (p=1) 2017-11-14 09:45:27,465 [DEBUG] contig 2017-11-14 09:45:27,466 [DEBUG] who? ref0218797.23e5 ref0218797e3 2017-11-14 09:45:27,466 [DEBUG] Grabbing contig between nodes ref0218797.23e5 & ref0218797e3 - [trim 0, 0] 2017-11-14 09:45:27,466 [DEBUG] contig 31700 to 32318 2017-11-14 09:45:27,466 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,466 [DEBUG] Moving from ref0218797.23e5 to ref0218797.22e3 (p=1) 2017-11-14 09:45:27,466 [DEBUG] unimproved gap 2017-11-14 09:45:27,466 [DEBUG] Moving from ref0218797.22e3 to ref0218797.22e5 (p=1) 2017-11-14 09:45:27,466 [DEBUG] contig 2017-11-14 09:45:27,466 [DEBUG] who? ref0218797.22e5 ref0218797.22e3 2017-11-14 09:45:27,466 [DEBUG] Grabbing contig between nodes ref0218797.22e5 & ref0218797.22e3 - [trim 0, 0] 2017-11-14 09:45:27,466 [DEBUG] contig 31210 to 31425 2017-11-14 09:45:27,466 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,466 [DEBUG] Moving from ref0218797.22e5 to ref0218797.21e3 (p=1) 2017-11-14 09:45:27,467 [DEBUG] unimproved gap 2017-11-14 09:45:27,467 [DEBUG] Moving from ref0218797.21e3 to ref0218797.21e5 (p=1) 2017-11-14 09:45:27,467 [DEBUG] contig 2017-11-14 09:45:27,467 [DEBUG] who? ref0218797.21e5 ref0218797.21e3 2017-11-14 09:45:27,467 [DEBUG] Grabbing contig between nodes ref0218797.21e5 & ref0218797.21e3 - [trim 0, 0] 2017-11-14 09:45:27,467 [DEBUG] contig 30915 to 30961 2017-11-14 09:45:27,467 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,467 [DEBUG] Moving from ref0218797.21e5 to ref0218797.20e3 (p=1) 2017-11-14 09:45:27,467 [DEBUG] unimproved gap 2017-11-14 09:45:27,467 [DEBUG] Moving from ref0218797.20e3 to ref0218797.20e5 (p=1) 2017-11-14 09:45:27,467 [DEBUG] contig 2017-11-14 09:45:27,467 [DEBUG] who? ref0218797.20e5 ref0218797.20e3 2017-11-14 09:45:27,467 [DEBUG] Grabbing contig between nodes ref0218797.20e5 & ref0218797.20e3 - [trim 0, 0] 2017-11-14 09:45:27,467 [DEBUG] contig 30639 to 30672 2017-11-14 09:45:27,468 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,468 [DEBUG] Moving from ref0218797.20e5 to ref0218797.19e3 (p=1) 2017-11-14 09:45:27,468 [DEBUG] unimproved gap 2017-11-14 09:45:27,468 [DEBUG] Moving from ref0218797.19e3 to ref0218797.19e5 (p=1) 2017-11-14 09:45:27,468 [DEBUG] contig 2017-11-14 09:45:27,468 [DEBUG] who? ref0218797.19e5 ref0218797.19e3 2017-11-14 09:45:27,468 [DEBUG] Grabbing contig between nodes ref0218797.19e5 & ref0218797.19e3 - [trim 0, 0] 2017-11-14 09:45:27,468 [DEBUG] contig 27475 to 30465 2017-11-14 09:45:27,468 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,468 [DEBUG] Moving from ref0218797.19e5 to ref0218797.18e3 (p=1) 2017-11-14 09:45:27,468 [DEBUG] unimproved gap 2017-11-14 09:45:27,468 [DEBUG] Moving from ref0218797.18e3 to ref0218797.18e5 (p=1) 2017-11-14 09:45:27,468 [DEBUG] contig 2017-11-14 09:45:27,469 [DEBUG] who? ref0218797.18e5 ref0218797.18e3 2017-11-14 09:45:27,469 [DEBUG] Grabbing contig between nodes ref0218797.18e5 & ref0218797.18e3 - [trim 0, 0] 2017-11-14 09:45:27,469 [DEBUG] contig 26148 to 26948 2017-11-14 09:45:27,469 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,469 [DEBUG] Moving from ref0218797.18e5 to ref0218797.17e3 (p=1) 2017-11-14 09:45:27,469 [DEBUG] unimproved gap 2017-11-14 09:45:27,469 [DEBUG] Moving from ref0218797.17e3 to ref0218797.17e5 (p=1) 2017-11-14 09:45:27,469 [DEBUG] contig 2017-11-14 09:45:27,469 [DEBUG] who? ref0218797.17e5 ref0218797.17e3 2017-11-14 09:45:27,469 [DEBUG] Grabbing contig between nodes ref0218797.17e5 & ref0218797.17e3 - [trim 0, 0] 2017-11-14 09:45:27,469 [DEBUG] contig 22818 to 25876 2017-11-14 09:45:27,469 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,469 [DEBUG] Moving from ref0218797.17e5 to ref0218797.16e3 (p=1) 2017-11-14 09:45:27,470 [DEBUG] unimproved gap 2017-11-14 09:45:27,470 [DEBUG] Moving from ref0218797.16e3 to ref0218797.16e5 (p=1) 2017-11-14 09:45:27,470 [DEBUG] contig 2017-11-14 09:45:27,470 [DEBUG] who? ref0218797.16e5 ref0218797.16e3 2017-11-14 09:45:27,470 [DEBUG] Grabbing contig between nodes ref0218797.16e5 & ref0218797.16e3 - [trim 0, 0] 2017-11-14 09:45:27,470 [DEBUG] contig 19021 to 22515 2017-11-14 09:45:27,470 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,470 [DEBUG] Moving from ref0218797.16e5 to ref0218797.15e3 (p=1) 2017-11-14 09:45:27,470 [DEBUG] unimproved gap 2017-11-14 09:45:27,470 [DEBUG] Moving from ref0218797.15e3 to ref0218797.15e5 (p=1) 2017-11-14 09:45:27,470 [DEBUG] contig 2017-11-14 09:45:27,470 [DEBUG] who? ref0218797.15e5 ref0218797.15e3 2017-11-14 09:45:27,470 [DEBUG] Grabbing contig between nodes ref0218797.15e5 & ref0218797.15e3 - [trim 0, 0] 2017-11-14 09:45:27,470 [DEBUG] contig 18278 to 18694 2017-11-14 09:45:27,471 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,471 [DEBUG] Moving from ref0218797.15e5 to ref0218797.14e3 (p=1) 2017-11-14 09:45:27,471 [DEBUG] unimproved gap 2017-11-14 09:45:27,471 [DEBUG] Moving from ref0218797.14e3 to ref0218797.14e5 (p=1) 2017-11-14 09:45:27,471 [DEBUG] contig 2017-11-14 09:45:27,471 [DEBUG] who? ref0218797.14e5 ref0218797.14e3 2017-11-14 09:45:27,471 [DEBUG] Grabbing contig between nodes ref0218797.14e5 & ref0218797.14e3 - [trim 0, 0] 2017-11-14 09:45:27,471 [DEBUG] contig 18076 to 18145 2017-11-14 09:45:27,471 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,471 [DEBUG] Moving from ref0218797.14e5 to ref0218797.13e3 (p=1) 2017-11-14 09:45:27,471 [DEBUG] unimproved gap 2017-11-14 09:45:27,471 [DEBUG] Moving from ref0218797.13e3 to ref0218797.13e5 (p=1) 2017-11-14 09:45:27,471 [DEBUG] contig 2017-11-14 09:45:27,472 [DEBUG] who? ref0218797.13e5 ref0218797.13e3 2017-11-14 09:45:27,472 [DEBUG] Grabbing contig between nodes ref0218797.13e5 & ref0218797.13e3 - [trim 0, 0] 2017-11-14 09:45:27,472 [DEBUG] contig 15329 to 17975 2017-11-14 09:45:27,472 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,472 [DEBUG] Moving from ref0218797.13e5 to ref0218797.12e3 (p=1) 2017-11-14 09:45:27,472 [DEBUG] unimproved gap 2017-11-14 09:45:27,472 [DEBUG] Moving from ref0218797.12e3 to ref0218797.12e5 (p=1) 2017-11-14 09:45:27,472 [DEBUG] contig 2017-11-14 09:45:27,472 [DEBUG] who? ref0218797.12e5 ref0218797.12e3 2017-11-14 09:45:27,472 [DEBUG] Grabbing contig between nodes ref0218797.12e5 & ref0218797.12e3 - [trim 0, 0] 2017-11-14 09:45:27,472 [DEBUG] contig 12689 to 14785 2017-11-14 09:45:27,472 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,472 [DEBUG] Moving from ref0218797.12e5 to ref0218797.11e3 (p=1) 2017-11-14 09:45:27,473 [DEBUG] unimproved gap 2017-11-14 09:45:27,473 [DEBUG] Moving from ref0218797.11e3 to ref0218797.11e5 (p=1) 2017-11-14 09:45:27,473 [DEBUG] contig 2017-11-14 09:45:27,473 [DEBUG] who? ref0218797.11e5 ref0218797.11e3 2017-11-14 09:45:27,473 [DEBUG] Grabbing contig between nodes ref0218797.11e5 & ref0218797.11e3 - [trim 0, 0] 2017-11-14 09:45:27,473 [DEBUG] contig 9625 to 12325 2017-11-14 09:45:27,473 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,473 [DEBUG] Moving from ref0218797.11e5 to ref0218797.10e3 (p=1) 2017-11-14 09:45:27,473 [DEBUG] unimproved gap 2017-11-14 09:45:27,473 [DEBUG] Moving from ref0218797.10e3 to ref0218797.10e5 (p=1) 2017-11-14 09:45:27,473 [DEBUG] contig 2017-11-14 09:45:27,473 [DEBUG] who? ref0218797.10e5 ref0218797.10e3 2017-11-14 09:45:27,473 [DEBUG] Grabbing contig between nodes ref0218797.10e5 & ref0218797.10e3 - [trim 0, 0] 2017-11-14 09:45:27,474 [DEBUG] contig 8958 to 9189 2017-11-14 09:45:27,474 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,474 [DEBUG] Moving from ref0218797.10e5 to ref0218797.9e3 (p=1) 2017-11-14 09:45:27,474 [DEBUG] unimproved gap 2017-11-14 09:45:27,474 [DEBUG] Moving from ref0218797.9e3 to ref0218797.9e5 (p=1) 2017-11-14 09:45:27,474 [DEBUG] contig 2017-11-14 09:45:27,474 [DEBUG] who? ref0218797.9e5 ref0218797.9e3 2017-11-14 09:45:27,474 [DEBUG] Grabbing contig between nodes ref0218797.9e5 & ref0218797.9e3 - [trim 0, 0] 2017-11-14 09:45:27,474 [DEBUG] contig 8333 to 8602 2017-11-14 09:45:27,474 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,474 [DEBUG] Moving from ref0218797.9e5 to ref0218797.8e3 (p=1) 2017-11-14 09:45:27,474 [DEBUG] unimproved gap 2017-11-14 09:45:27,474 [DEBUG] Moving from ref0218797.8e3 to ref0218797.8e5 (p=1) 2017-11-14 09:45:27,474 [DEBUG] contig 2017-11-14 09:45:27,475 [DEBUG] who? ref0218797.8e5 ref0218797.8e3 2017-11-14 09:45:27,475 [DEBUG] Grabbing contig between nodes ref0218797.8e5 & ref0218797.8e3 - [trim 0, 0] 2017-11-14 09:45:27,475 [DEBUG] contig 8034 to 8102 2017-11-14 09:45:27,475 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,475 [DEBUG] Moving from ref0218797.8e5 to ref0218797.7e3 (p=1) 2017-11-14 09:45:27,475 [DEBUG] unimproved gap 2017-11-14 09:45:27,475 [DEBUG] Moving from ref0218797.7e3 to ref0218797.7e5 (p=1) 2017-11-14 09:45:27,475 [DEBUG] contig 2017-11-14 09:45:27,475 [DEBUG] who? ref0218797.7e5 ref0218797.7e3 2017-11-14 09:45:27,475 [DEBUG] Grabbing contig between nodes ref0218797.7e5 & ref0218797.7e3 - [trim 0, 0] 2017-11-14 09:45:27,475 [DEBUG] contig 7557 to 7873 2017-11-14 09:45:27,475 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,475 [DEBUG] Moving from ref0218797.7e5 to ref0218797.6e3 (p=1) 2017-11-14 09:45:27,476 [DEBUG] unimproved gap 2017-11-14 09:45:27,476 [DEBUG] Moving from ref0218797.6e3 to ref0218797.6e5 (p=1) 2017-11-14 09:45:27,476 [DEBUG] contig 2017-11-14 09:45:27,476 [DEBUG] who? ref0218797.6e5 ref0218797.6e3 2017-11-14 09:45:27,476 [DEBUG] Grabbing contig between nodes ref0218797.6e5 & ref0218797.6e3 - [trim 0, 0] 2017-11-14 09:45:27,476 [DEBUG] contig 7002 to 7410 2017-11-14 09:45:27,476 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,476 [DEBUG] Moving from ref0218797.6e5 to ref0218797.5e3 (p=1) 2017-11-14 09:45:27,476 [DEBUG] unimproved gap 2017-11-14 09:45:27,476 [DEBUG] Moving from ref0218797.5e3 to ref0218797.5e5 (p=1) 2017-11-14 09:45:27,476 [DEBUG] contig 2017-11-14 09:45:27,476 [DEBUG] who? ref0218797.5e5 ref0218797.5e3 2017-11-14 09:45:27,477 [DEBUG] Grabbing contig between nodes ref0218797.5e5 & ref0218797.5e3 - [trim 0, 0] 2017-11-14 09:45:27,477 [DEBUG] contig 6185 to 6470 2017-11-14 09:45:27,477 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,477 [DEBUG] Moving from ref0218797.5e5 to ref0218797.4e3 (p=1) 2017-11-14 09:45:27,477 [DEBUG] unimproved gap 2017-11-14 09:45:27,477 [DEBUG] Moving from ref0218797.4e3 to ref0218797.4e5 (p=1) 2017-11-14 09:45:27,477 [DEBUG] contig 2017-11-14 09:45:27,477 [DEBUG] who? ref0218797.4e5 ref0218797.4e3 2017-11-14 09:45:27,477 [DEBUG] Grabbing contig between nodes ref0218797.4e5 & ref0218797.4e3 - [trim 0, 0] 2017-11-14 09:45:27,477 [DEBUG] contig 5511 to 5910 2017-11-14 09:45:27,477 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,477 [DEBUG] Moving from ref0218797.4e5 to ref0218797.3e3 (p=1) 2017-11-14 09:45:27,477 [DEBUG] unimproved gap 2017-11-14 09:45:27,478 [DEBUG] Moving from ref0218797.3e3 to ref0218797.3e5 (p=1) 2017-11-14 09:45:27,478 [DEBUG] contig 2017-11-14 09:45:27,478 [DEBUG] who? ref0218797.3e5 ref0218797.3e3 2017-11-14 09:45:27,478 [DEBUG] Grabbing contig between nodes ref0218797.3e5 & ref0218797.3e3 - [trim 0, 0] 2017-11-14 09:45:27,478 [DEBUG] contig 4806 to 5285 2017-11-14 09:45:27,478 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,478 [DEBUG] Moving from ref0218797.3e5 to ref0218797.2e3 (p=1) 2017-11-14 09:45:27,478 [DEBUG] unimproved gap 2017-11-14 09:45:27,478 [DEBUG] Moving from ref0218797.2e3 to ref0218797.2e5 (p=1) 2017-11-14 09:45:27,478 [DEBUG] contig 2017-11-14 09:45:27,478 [DEBUG] who? ref0218797.2e5 ref0218797.2e3 2017-11-14 09:45:27,478 [DEBUG] Grabbing contig between nodes ref0218797.2e5 & ref0218797.2e3 - [trim 0, 0] 2017-11-14 09:45:27,478 [DEBUG] contig 1919 to 4447 2017-11-14 09:45:27,478 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,479 [DEBUG] Moving from ref0218797.2e5 to ref0218797.1e3 (p=1) 2017-11-14 09:45:27,479 [DEBUG] unimproved gap 2017-11-14 09:45:27,479 [DEBUG] Moving from ref0218797.1e3 to ref0218797.1e5 (p=1) 2017-11-14 09:45:27,479 [DEBUG] contig 2017-11-14 09:45:27,479 [DEBUG] who? ref0218797.1e5 ref0218797.1e3 2017-11-14 09:45:27,479 [DEBUG] Grabbing contig between nodes ref0218797.1e5 & ref0218797.1e3 - [trim 0, 0] 2017-11-14 09:45:27,479 [DEBUG] contig 595 to 1841 2017-11-14 09:45:27,479 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,479 [DEBUG] Moving from ref0218797.1e5 to ref0218797.0e3 (p=1) 2017-11-14 09:45:27,479 [DEBUG] unimproved gap 2017-11-14 09:45:27,479 [DEBUG] Moving from ref0218797.0e3 to ref0218797e5 (p=1) 2017-11-14 09:45:27,479 [DEBUG] contig 2017-11-14 09:45:27,479 [DEBUG] who? ref0218797e5 ref0218797.0e3 2017-11-14 09:45:27,479 [DEBUG] Grabbing contig between nodes ref0218797e5 & ref0218797.0e3 - [trim 0, 0] 2017-11-14 09:45:27,480 [DEBUG] contig 0 to 65 2017-11-14 09:45:27,480 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,480 [DEBUG] FirstFlipping 8 2017-11-14 09:45:27,480 [DEBUG] Contig 9 2017-11-14 09:45:27,483 [DEBUG] Moving from ref0377966e5 to ref0377966.0e3 (p=1) 2017-11-14 09:45:27,483 [DEBUG] contig 2017-11-14 09:45:27,483 [DEBUG] who? ref0377966e5 ref0377966.0e3 2017-11-14 09:45:27,484 [DEBUG] Grabbing contig between nodes ref0377966e5 & ref0377966.0e3 - [trim 0, 0] 2017-11-14 09:45:27,484 [DEBUG] contig 0 to 2720 2017-11-14 09:45:27,484 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,484 [DEBUG] Moving from ref0377966.0e3 to ref0377966.1e5 (p=1) 2017-11-14 09:45:27,484 [DEBUG] unimproved gap 2017-11-14 09:45:27,484 [DEBUG] Moving from ref0377966.1e5 to ref0377966.1e3 (p=1) 2017-11-14 09:45:27,484 [DEBUG] contig 2017-11-14 09:45:27,484 [DEBUG] who? ref0377966.1e5 ref0377966.1e3 2017-11-14 09:45:27,484 [DEBUG] Grabbing contig between nodes ref0377966.1e5 & ref0377966.1e3 - [trim 0, 0] 2017-11-14 09:45:27,484 [DEBUG] contig 2800 to 2860 2017-11-14 09:45:27,484 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,484 [DEBUG] Moving from ref0377966.1e3 to ref0377966.2e5 (p=1) 2017-11-14 09:45:27,484 [DEBUG] unimproved gap 2017-11-14 09:45:27,485 [DEBUG] Moving from ref0377966.2e5 to ref0377966.2e3 (p=1) 2017-11-14 09:45:27,485 [DEBUG] contig 2017-11-14 09:45:27,485 [DEBUG] who? ref0377966.2e5 ref0377966.2e3 2017-11-14 09:45:27,485 [DEBUG] Grabbing contig between nodes ref0377966.2e5 & ref0377966.2e3 - [trim 0, 0] 2017-11-14 09:45:27,485 [DEBUG] contig 2987 to 3441 2017-11-14 09:45:27,485 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,485 [DEBUG] Moving from ref0377966.2e3 to ref0377966.3e5 (p=1) 2017-11-14 09:45:27,485 [DEBUG] unimproved gap 2017-11-14 09:45:27,485 [DEBUG] Moving from ref0377966.3e5 to ref0377966.3e3 (p=1) 2017-11-14 09:45:27,485 [DEBUG] contig 2017-11-14 09:45:27,485 [DEBUG] who? ref0377966.3e5 ref0377966.3e3 2017-11-14 09:45:27,485 [DEBUG] Grabbing contig between nodes ref0377966.3e5 & ref0377966.3e3 - [trim 0, 0] 2017-11-14 09:45:27,485 [DEBUG] contig 3622 to 4959 2017-11-14 09:45:27,486 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,486 [DEBUG] Moving from ref0377966.3e3 to ref0377966.4e5 (p=1) 2017-11-14 09:45:27,486 [DEBUG] unimproved gap 2017-11-14 09:45:27,486 [DEBUG] Moving from ref0377966.4e5 to ref0377966.4e3 (p=1) 2017-11-14 09:45:27,486 [DEBUG] contig 2017-11-14 09:45:27,486 [DEBUG] who? ref0377966.4e5 ref0377966.4e3 2017-11-14 09:45:27,486 [DEBUG] Grabbing contig between nodes ref0377966.4e5 & ref0377966.4e3 - [trim 0, 0] 2017-11-14 09:45:27,486 [DEBUG] contig 4994 to 7597 2017-11-14 09:45:27,486 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,486 [DEBUG] Moving from ref0377966.4e3 to ref0377966.5e5 (p=1) 2017-11-14 09:45:27,486 [DEBUG] unimproved gap 2017-11-14 09:45:27,486 [DEBUG] Moving from ref0377966.5e5 to ref0377966.5e3 (p=1) 2017-11-14 09:45:27,486 [DEBUG] contig 2017-11-14 09:45:27,486 [DEBUG] who? ref0377966.5e5 ref0377966.5e3 2017-11-14 09:45:27,487 [DEBUG] Grabbing contig between nodes ref0377966.5e5 & ref0377966.5e3 - [trim 0, 0] 2017-11-14 09:45:27,487 [DEBUG] contig 7868 to 8029 2017-11-14 09:45:27,487 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,487 [DEBUG] Moving from ref0377966.5e3 to ref0377966.6e5 (p=1) 2017-11-14 09:45:27,487 [DEBUG] unimproved gap 2017-11-14 09:45:27,487 [DEBUG] Moving from ref0377966.6e5 to ref0377966.6e3 (p=1) 2017-11-14 09:45:27,487 [DEBUG] contig 2017-11-14 09:45:27,487 [DEBUG] who? ref0377966.6e5 ref0377966.6e3 2017-11-14 09:45:27,487 [DEBUG] Grabbing contig between nodes ref0377966.6e5 & ref0377966.6e3 - [trim 0, 0] 2017-11-14 09:45:27,487 [DEBUG] contig 8080 to 9795 2017-11-14 09:45:27,487 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,487 [DEBUG] Moving from ref0377966.6e3 to ref0377966.7e5 (p=1) 2017-11-14 09:45:27,487 [DEBUG] unimproved gap 2017-11-14 09:45:27,488 [DEBUG] Moving from ref0377966.7e5 to ref0377966.7e3 (p=1) 2017-11-14 09:45:27,488 [DEBUG] contig 2017-11-14 09:45:27,488 [DEBUG] who? ref0377966.7e5 ref0377966.7e3 2017-11-14 09:45:27,488 [DEBUG] Grabbing contig between nodes ref0377966.7e5 & ref0377966.7e3 - [trim 0, 0] 2017-11-14 09:45:27,488 [DEBUG] contig 9929 to 16207 2017-11-14 09:45:27,488 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,488 [DEBUG] Moving from ref0377966.7e3 to ref0377966.8e5 (p=1) 2017-11-14 09:45:27,488 [DEBUG] unimproved gap 2017-11-14 09:45:27,488 [DEBUG] Moving from ref0377966.8e5 to ref0377966.8e3 (p=1) 2017-11-14 09:45:27,488 [DEBUG] contig 2017-11-14 09:45:27,488 [DEBUG] who? ref0377966.8e5 ref0377966.8e3 2017-11-14 09:45:27,488 [DEBUG] Grabbing contig between nodes ref0377966.8e5 & ref0377966.8e3 - [trim 0, 0] 2017-11-14 09:45:27,488 [DEBUG] contig 16310 to 16352 2017-11-14 09:45:27,489 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,489 [DEBUG] Moving from ref0377966.8e3 to ref0377966.9e5 (p=1) 2017-11-14 09:45:27,489 [DEBUG] unimproved gap 2017-11-14 09:45:27,489 [DEBUG] Moving from ref0377966.9e5 to ref0377966.9e3 (p=1) 2017-11-14 09:45:27,489 [DEBUG] contig 2017-11-14 09:45:27,489 [DEBUG] who? ref0377966.9e5 ref0377966.9e3 2017-11-14 09:45:27,489 [DEBUG] Grabbing contig between nodes ref0377966.9e5 & ref0377966.9e3 - [trim 0, 0] 2017-11-14 09:45:27,489 [DEBUG] contig 16407 to 17381 2017-11-14 09:45:27,489 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,489 [DEBUG] Moving from ref0377966.9e3 to ref0377966.10e5 (p=1) 2017-11-14 09:45:27,489 [DEBUG] unimproved gap 2017-11-14 09:45:27,489 [DEBUG] Moving from ref0377966.10e5 to ref0377966.10e3 (p=1) 2017-11-14 09:45:27,489 [DEBUG] contig 2017-11-14 09:45:27,489 [DEBUG] who? ref0377966.10e5 ref0377966.10e3 2017-11-14 09:45:27,490 [DEBUG] Grabbing contig between nodes ref0377966.10e5 & ref0377966.10e3 - [trim 0, 0] 2017-11-14 09:45:27,490 [DEBUG] contig 17502 to 17920 2017-11-14 09:45:27,490 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,490 [DEBUG] Moving from ref0377966.10e3 to ref0377966.11e5 (p=1) 2017-11-14 09:45:27,490 [DEBUG] unimproved gap 2017-11-14 09:45:27,490 [DEBUG] Moving from ref0377966.11e5 to ref0377966.11e3 (p=1) 2017-11-14 09:45:27,490 [DEBUG] contig 2017-11-14 09:45:27,490 [DEBUG] who? ref0377966.11e5 ref0377966.11e3 2017-11-14 09:45:27,490 [DEBUG] Grabbing contig between nodes ref0377966.11e5 & ref0377966.11e3 - [trim 0, 0] 2017-11-14 09:45:27,490 [DEBUG] contig 17968 to 20959 2017-11-14 09:45:27,490 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,490 [DEBUG] Moving from ref0377966.11e3 to ref0377966.12e5 (p=1) 2017-11-14 09:45:27,490 [DEBUG] unimproved gap 2017-11-14 09:45:27,491 [DEBUG] Moving from ref0377966.12e5 to ref0377966.12e3 (p=1) 2017-11-14 09:45:27,491 [DEBUG] contig 2017-11-14 09:45:27,491 [DEBUG] who? ref0377966.12e5 ref0377966.12e3 2017-11-14 09:45:27,491 [DEBUG] Grabbing contig between nodes ref0377966.12e5 & ref0377966.12e3 - [trim 0, 0] 2017-11-14 09:45:27,491 [DEBUG] contig 20996 to 25910 2017-11-14 09:45:27,491 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,491 [DEBUG] Moving from ref0377966.12e3 to ref0377966.13e5 (p=1) 2017-11-14 09:45:27,491 [DEBUG] unimproved gap 2017-11-14 09:45:27,491 [DEBUG] Moving from ref0377966.13e5 to ref0377966.13e3 (p=1) 2017-11-14 09:45:27,491 [DEBUG] contig 2017-11-14 09:45:27,491 [DEBUG] who? ref0377966.13e5 ref0377966.13e3 2017-11-14 09:45:27,491 [DEBUG] Grabbing contig between nodes ref0377966.13e5 & ref0377966.13e3 - [trim 0, 0] 2017-11-14 09:45:27,491 [DEBUG] contig 25935 to 26238 2017-11-14 09:45:27,492 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,492 [DEBUG] Moving from ref0377966.13e3 to ref0377966.14e5 (p=1) 2017-11-14 09:45:27,492 [DEBUG] unimproved gap 2017-11-14 09:45:27,492 [DEBUG] Moving from ref0377966.14e5 to ref0377966.14e3 (p=1) 2017-11-14 09:45:27,492 [DEBUG] contig 2017-11-14 09:45:27,492 [DEBUG] who? ref0377966.14e5 ref0377966.14e3 2017-11-14 09:45:27,492 [DEBUG] Grabbing contig between nodes ref0377966.14e5 & ref0377966.14e3 - [trim 0, 0] 2017-11-14 09:45:27,492 [DEBUG] contig 26497 to 28390 2017-11-14 09:45:27,492 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,492 [DEBUG] Moving from ref0377966.14e3 to ref0377966.15e5 (p=1) 2017-11-14 09:45:27,492 [DEBUG] unimproved gap 2017-11-14 09:45:27,492 [DEBUG] Moving from ref0377966.15e5 to ref0377966.15e3 (p=1) 2017-11-14 09:45:27,492 [DEBUG] contig 2017-11-14 09:45:27,493 [DEBUG] who? ref0377966.15e5 ref0377966.15e3 2017-11-14 09:45:27,493 [DEBUG] Grabbing contig between nodes ref0377966.15e5 & ref0377966.15e3 - [trim 0, 0] 2017-11-14 09:45:27,493 [DEBUG] contig 28421 to 28466 2017-11-14 09:45:27,493 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,493 [DEBUG] Moving from ref0377966.15e3 to ref0377966.16e5 (p=1) 2017-11-14 09:45:27,493 [DEBUG] unimproved gap 2017-11-14 09:45:27,493 [DEBUG] Moving from ref0377966.16e5 to ref0377966.16e3 (p=1) 2017-11-14 09:45:27,493 [DEBUG] contig 2017-11-14 09:45:27,493 [DEBUG] who? ref0377966.16e5 ref0377966.16e3 2017-11-14 09:45:27,493 [DEBUG] Grabbing contig between nodes ref0377966.16e5 & ref0377966.16e3 - [trim 0, 0] 2017-11-14 09:45:27,493 [DEBUG] contig 28540 to 30371 2017-11-14 09:45:27,493 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,493 [DEBUG] Moving from ref0377966.16e3 to ref0377966.17e5 (p=1) 2017-11-14 09:45:27,493 [DEBUG] unimproved gap 2017-11-14 09:45:27,494 [DEBUG] Moving from ref0377966.17e5 to ref0377966.17e3 (p=1) 2017-11-14 09:45:27,494 [DEBUG] contig 2017-11-14 09:45:27,494 [DEBUG] who? ref0377966.17e5 ref0377966.17e3 2017-11-14 09:45:27,494 [DEBUG] Grabbing contig between nodes ref0377966.17e5 & ref0377966.17e3 - [trim 0, 0] 2017-11-14 09:45:27,494 [DEBUG] contig 30671 to 30842 2017-11-14 09:45:27,494 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,494 [DEBUG] Moving from ref0377966.17e3 to ref0377966.18e5 (p=1) 2017-11-14 09:45:27,494 [DEBUG] unimproved gap 2017-11-14 09:45:27,494 [DEBUG] Moving from ref0377966.18e5 to ref0377966.18e3 (p=1) 2017-11-14 09:45:27,494 [DEBUG] contig 2017-11-14 09:45:27,494 [DEBUG] who? ref0377966.18e5 ref0377966.18e3 2017-11-14 09:45:27,494 [DEBUG] Grabbing contig between nodes ref0377966.18e5 & ref0377966.18e3 - [trim 0, 0] 2017-11-14 09:45:27,494 [DEBUG] contig 31539 to 33030 2017-11-14 09:45:27,495 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,495 [DEBUG] Moving from ref0377966.18e3 to ref0377966.19e5 (p=1) 2017-11-14 09:45:27,495 [DEBUG] unimproved gap 2017-11-14 09:45:27,495 [DEBUG] Moving from ref0377966.19e5 to ref0377966.19e3 (p=1) 2017-11-14 09:45:27,495 [DEBUG] contig 2017-11-14 09:45:27,495 [DEBUG] who? ref0377966.19e5 ref0377966.19e3 2017-11-14 09:45:27,495 [DEBUG] Grabbing contig between nodes ref0377966.19e5 & ref0377966.19e3 - [trim 0, 0] 2017-11-14 09:45:27,495 [DEBUG] contig 33631 to 34938 2017-11-14 09:45:27,495 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,495 [DEBUG] Moving from ref0377966.19e3 to ref0377966.20e5 (p=1) 2017-11-14 09:45:27,495 [DEBUG] unimproved gap 2017-11-14 09:45:27,495 [DEBUG] Moving from ref0377966.20e5 to ref0377966.20e3 (p=1) 2017-11-14 09:45:27,495 [DEBUG] contig 2017-11-14 09:45:27,496 [DEBUG] who? ref0377966.20e5 ref0377966.20e3 2017-11-14 09:45:27,496 [DEBUG] Grabbing contig between nodes ref0377966.20e5 & ref0377966.20e3 - [trim 0, 0] 2017-11-14 09:45:27,496 [DEBUG] contig 35003 to 35570 2017-11-14 09:45:27,496 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,496 [DEBUG] Moving from ref0377966.20e3 to ref0377966.21e5 (p=1) 2017-11-14 09:45:27,496 [DEBUG] unimproved gap 2017-11-14 09:45:27,496 [DEBUG] Moving from ref0377966.21e5 to ref0377966.21e3 (p=1) 2017-11-14 09:45:27,496 [DEBUG] contig 2017-11-14 09:45:27,496 [DEBUG] who? ref0377966.21e5 ref0377966.21e3 2017-11-14 09:45:27,496 [DEBUG] Grabbing contig between nodes ref0377966.21e5 & ref0377966.21e3 - [trim 0, 0] 2017-11-14 09:45:27,496 [DEBUG] contig 35637 to 35884 2017-11-14 09:45:27,496 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,496 [DEBUG] Moving from ref0377966.21e3 to ref0377966.22e5 (p=1) 2017-11-14 09:45:27,496 [DEBUG] unimproved gap 2017-11-14 09:45:27,497 [DEBUG] Moving from ref0377966.22e5 to ref0377966.22e3 (p=1) 2017-11-14 09:45:27,497 [DEBUG] contig 2017-11-14 09:45:27,497 [DEBUG] who? ref0377966.22e5 ref0377966.22e3 2017-11-14 09:45:27,497 [DEBUG] Grabbing contig between nodes ref0377966.22e5 & ref0377966.22e3 - [trim 0, 0] 2017-11-14 09:45:27,497 [DEBUG] contig 35913 to 35955 2017-11-14 09:45:27,497 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,497 [DEBUG] Moving from ref0377966.22e3 to ref0377966.23e5 (p=1) 2017-11-14 09:45:27,497 [DEBUG] unimproved gap 2017-11-14 09:45:27,497 [DEBUG] Moving from ref0377966.23e5 to ref0377966e3 (p=1) 2017-11-14 09:45:27,497 [DEBUG] contig 2017-11-14 09:45:27,497 [DEBUG] who? ref0377966.23e5 ref0377966e3 2017-11-14 09:45:27,497 [DEBUG] Grabbing contig between nodes ref0377966.23e5 & ref0377966e3 - [trim 0, 0] 2017-11-14 09:45:27,497 [DEBUG] contig 36019 to 36524 2017-11-14 09:45:27,498 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,498 [DEBUG] Contig 10 2017-11-14 09:45:27,501 [DEBUG] Moving from ref0055494e3 to ref0055494.22e5 (p=1) 2017-11-14 09:45:27,501 [DEBUG] contig 2017-11-14 09:45:27,501 [DEBUG] who? ref0055494.22e5 ref0055494e3 2017-11-14 09:45:27,501 [DEBUG] Grabbing contig between nodes ref0055494.22e5 & ref0055494e3 - [trim 0, 0] 2017-11-14 09:45:27,501 [DEBUG] contig 15155 to 15233 2017-11-14 09:45:27,501 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,501 [DEBUG] Moving from ref0055494.22e5 to ref0055494.21e3 (p=1) 2017-11-14 09:45:27,501 [DEBUG] unimproved gap 2017-11-14 09:45:27,501 [DEBUG] Moving from ref0055494.21e3 to ref0055494.21e5 (p=1) 2017-11-14 09:45:27,501 [DEBUG] contig 2017-11-14 09:45:27,501 [DEBUG] who? ref0055494.21e5 ref0055494.21e3 2017-11-14 09:45:27,502 [DEBUG] Grabbing contig between nodes ref0055494.21e5 & ref0055494.21e3 - [trim 0, 0] 2017-11-14 09:45:27,502 [DEBUG] contig 13943 to 14921 2017-11-14 09:45:27,502 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,502 [DEBUG] Moving from ref0055494.21e5 to ref0055494.20e3 (p=1) 2017-11-14 09:45:27,502 [DEBUG] unimproved gap 2017-11-14 09:45:27,502 [DEBUG] Moving from ref0055494.20e3 to ref0055494.20e5 (p=1) 2017-11-14 09:45:27,502 [DEBUG] contig 2017-11-14 09:45:27,502 [DEBUG] who? ref0055494.20e5 ref0055494.20e3 2017-11-14 09:45:27,502 [DEBUG] Grabbing contig between nodes ref0055494.20e5 & ref0055494.20e3 - [trim 0, 0] 2017-11-14 09:45:27,502 [DEBUG] contig 11361 to 13651 2017-11-14 09:45:27,502 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,502 [DEBUG] Moving from ref0055494.20e5 to ref0055494.19e3 (p=1) 2017-11-14 09:45:27,502 [DEBUG] unimproved gap 2017-11-14 09:45:27,503 [DEBUG] Moving from ref0055494.19e3 to ref0055494.19e5 (p=1) 2017-11-14 09:45:27,503 [DEBUG] contig 2017-11-14 09:45:27,503 [DEBUG] who? ref0055494.19e5 ref0055494.19e3 2017-11-14 09:45:27,503 [DEBUG] Grabbing contig between nodes ref0055494.19e5 & ref0055494.19e3 - [trim 0, 0] 2017-11-14 09:45:27,503 [DEBUG] contig 10988 to 11117 2017-11-14 09:45:27,503 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,503 [DEBUG] Moving from ref0055494.19e5 to ref0055494.18e3 (p=1) 2017-11-14 09:45:27,503 [DEBUG] unimproved gap 2017-11-14 09:45:27,503 [DEBUG] Moving from ref0055494.18e3 to ref0055494.18e5 (p=1) 2017-11-14 09:45:27,503 [DEBUG] contig 2017-11-14 09:45:27,503 [DEBUG] who? ref0055494.18e5 ref0055494.18e3 2017-11-14 09:45:27,503 [DEBUG] Grabbing contig between nodes ref0055494.18e5 & ref0055494.18e3 - [trim 0, 0] 2017-11-14 09:45:27,503 [DEBUG] contig 9679 to 10687 2017-11-14 09:45:27,504 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,504 [DEBUG] Moving from ref0055494.18e5 to ref0055494.17e3 (p=1) 2017-11-14 09:45:27,504 [DEBUG] unimproved gap 2017-11-14 09:45:27,504 [DEBUG] Moving from ref0055494.17e3 to ref0055494.17e5 (p=1) 2017-11-14 09:45:27,504 [DEBUG] contig 2017-11-14 09:45:27,504 [DEBUG] who? ref0055494.17e5 ref0055494.17e3 2017-11-14 09:45:27,504 [DEBUG] Grabbing contig between nodes ref0055494.17e5 & ref0055494.17e3 - [trim 0, 0] 2017-11-14 09:45:27,504 [DEBUG] contig 7567 to 9442 2017-11-14 09:45:27,504 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,504 [DEBUG] Moving from ref0055494.17e5 to ref0055494.16e3 (p=1) 2017-11-14 09:45:27,504 [DEBUG] unimproved gap 2017-11-14 09:45:27,504 [DEBUG] Moving from ref0055494.16e3 to ref0055494.16e5 (p=1) 2017-11-14 09:45:27,504 [DEBUG] contig 2017-11-14 09:45:27,504 [DEBUG] who? ref0055494.16e5 ref0055494.16e3 2017-11-14 09:45:27,505 [DEBUG] Grabbing contig between nodes ref0055494.16e5 & ref0055494.16e3 - [trim 0, 0] 2017-11-14 09:45:27,505 [DEBUG] contig 7476 to 7541 2017-11-14 09:45:27,505 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,505 [DEBUG] Moving from ref0055494.16e5 to ref0055494.15e3 (p=1) 2017-11-14 09:45:27,505 [DEBUG] unimproved gap 2017-11-14 09:45:27,505 [DEBUG] Moving from ref0055494.15e3 to ref0055494.15e5 (p=1) 2017-11-14 09:45:27,505 [DEBUG] contig 2017-11-14 09:45:27,505 [DEBUG] who? ref0055494.15e5 ref0055494.15e3 2017-11-14 09:45:27,505 [DEBUG] Grabbing contig between nodes ref0055494.15e5 & ref0055494.15e3 - [trim 0, 0] 2017-11-14 09:45:27,505 [DEBUG] contig 6559 to 7281 2017-11-14 09:45:27,505 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,505 [DEBUG] Moving from ref0055494.15e5 to ref0055494.14e3 (p=1) 2017-11-14 09:45:27,505 [DEBUG] unimproved gap 2017-11-14 09:45:27,506 [DEBUG] Moving from ref0055494.14e3 to ref0055494.14e5 (p=1) 2017-11-14 09:45:27,506 [DEBUG] contig 2017-11-14 09:45:27,506 [DEBUG] who? ref0055494.14e5 ref0055494.14e3 2017-11-14 09:45:27,506 [DEBUG] Grabbing contig between nodes ref0055494.14e5 & ref0055494.14e3 - [trim 0, 0] 2017-11-14 09:45:27,506 [DEBUG] contig 6274 to 6422 2017-11-14 09:45:27,506 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,506 [DEBUG] Moving from ref0055494.14e5 to ref0055494.13e3 (p=1) 2017-11-14 09:45:27,506 [DEBUG] unimproved gap 2017-11-14 09:45:27,506 [DEBUG] Moving from ref0055494.13e3 to ref0055494.13e5 (p=1) 2017-11-14 09:45:27,506 [DEBUG] contig 2017-11-14 09:45:27,506 [DEBUG] who? ref0055494.13e5 ref0055494.13e3 2017-11-14 09:45:27,506 [DEBUG] Grabbing contig between nodes ref0055494.13e5 & ref0055494.13e3 - [trim 0, 0] 2017-11-14 09:45:27,506 [DEBUG] contig 6053 to 6231 2017-11-14 09:45:27,506 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,507 [DEBUG] Moving from ref0055494.13e5 to ref0055494.12e3 (p=1) 2017-11-14 09:45:27,507 [DEBUG] unimproved gap 2017-11-14 09:45:27,507 [DEBUG] Moving from ref0055494.12e3 to ref0055494.12e5 (p=1) 2017-11-14 09:45:27,507 [DEBUG] contig 2017-11-14 09:45:27,507 [DEBUG] who? ref0055494.12e5 ref0055494.12e3 2017-11-14 09:45:27,507 [DEBUG] Grabbing contig between nodes ref0055494.12e5 & ref0055494.12e3 - [trim 0, 0] 2017-11-14 09:45:27,507 [DEBUG] contig 5791 to 5956 2017-11-14 09:45:27,507 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,507 [DEBUG] Moving from ref0055494.12e5 to ref0055494.11e3 (p=1) 2017-11-14 09:45:27,507 [DEBUG] unimproved gap 2017-11-14 09:45:27,507 [DEBUG] Moving from ref0055494.11e3 to ref0055494.11e5 (p=1) 2017-11-14 09:45:27,507 [DEBUG] contig 2017-11-14 09:45:27,507 [DEBUG] who? ref0055494.11e5 ref0055494.11e3 2017-11-14 09:45:27,508 [DEBUG] Grabbing contig between nodes ref0055494.11e5 & ref0055494.11e3 - [trim 0, 0] 2017-11-14 09:45:27,508 [DEBUG] contig 5085 to 5641 2017-11-14 09:45:27,508 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,508 [DEBUG] Moving from ref0055494.11e5 to ref0055494.10e3 (p=1) 2017-11-14 09:45:27,508 [DEBUG] unimproved gap 2017-11-14 09:45:27,508 [DEBUG] Moving from ref0055494.10e3 to ref0055494.10e5 (p=1) 2017-11-14 09:45:27,508 [DEBUG] contig 2017-11-14 09:45:27,508 [DEBUG] who? ref0055494.10e5 ref0055494.10e3 2017-11-14 09:45:27,508 [DEBUG] Grabbing contig between nodes ref0055494.10e5 & ref0055494.10e3 - [trim 0, 0] 2017-11-14 09:45:27,508 [DEBUG] contig 4724 to 5032 2017-11-14 09:45:27,508 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,508 [DEBUG] Moving from ref0055494.10e5 to ref0055494.9e3 (p=1) 2017-11-14 09:45:27,508 [DEBUG] unimproved gap 2017-11-14 09:45:27,509 [DEBUG] Moving from ref0055494.9e3 to ref0055494.9e5 (p=1) 2017-11-14 09:45:27,509 [DEBUG] contig 2017-11-14 09:45:27,509 [DEBUG] who? ref0055494.9e5 ref0055494.9e3 2017-11-14 09:45:27,509 [DEBUG] Grabbing contig between nodes ref0055494.9e5 & ref0055494.9e3 - [trim 0, 0] 2017-11-14 09:45:27,509 [DEBUG] contig 4594 to 4655 2017-11-14 09:45:27,509 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,509 [DEBUG] Moving from ref0055494.9e5 to ref0055494.8e3 (p=1) 2017-11-14 09:45:27,509 [DEBUG] unimproved gap 2017-11-14 09:45:27,509 [DEBUG] Moving from ref0055494.8e3 to ref0055494.8e5 (p=1) 2017-11-14 09:45:27,509 [DEBUG] contig 2017-11-14 09:45:27,509 [DEBUG] who? ref0055494.8e5 ref0055494.8e3 2017-11-14 09:45:27,509 [DEBUG] Grabbing contig between nodes ref0055494.8e5 & ref0055494.8e3 - [trim 0, 0] 2017-11-14 09:45:27,509 [DEBUG] contig 4388 to 4542 2017-11-14 09:45:27,509 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,510 [DEBUG] Moving from ref0055494.8e5 to ref0055494.7e3 (p=1) 2017-11-14 09:45:27,510 [DEBUG] unimproved gap 2017-11-14 09:45:27,510 [DEBUG] Moving from ref0055494.7e3 to ref0055494.7e5 (p=1) 2017-11-14 09:45:27,510 [DEBUG] contig 2017-11-14 09:45:27,510 [DEBUG] who? ref0055494.7e5 ref0055494.7e3 2017-11-14 09:45:27,510 [DEBUG] Grabbing contig between nodes ref0055494.7e5 & ref0055494.7e3 - [trim 0, 0] 2017-11-14 09:45:27,510 [DEBUG] contig 3990 to 4330 2017-11-14 09:45:27,510 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,510 [DEBUG] Moving from ref0055494.7e5 to ref0055494.6e3 (p=1) 2017-11-14 09:45:27,510 [DEBUG] unimproved gap 2017-11-14 09:45:27,510 [DEBUG] Moving from ref0055494.6e3 to ref0055494.6e5 (p=1) 2017-11-14 09:45:27,510 [DEBUG] contig 2017-11-14 09:45:27,510 [DEBUG] who? ref0055494.6e5 ref0055494.6e3 2017-11-14 09:45:27,511 [DEBUG] Grabbing contig between nodes ref0055494.6e5 & ref0055494.6e3 - [trim 0, 0] 2017-11-14 09:45:27,511 [DEBUG] contig 3725 to 3825 2017-11-14 09:45:27,511 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,511 [DEBUG] Moving from ref0055494.6e5 to ref0055494.5e3 (p=1) 2017-11-14 09:45:27,511 [DEBUG] unimproved gap 2017-11-14 09:45:27,511 [DEBUG] Moving from ref0055494.5e3 to ref0055494.5e5 (p=1) 2017-11-14 09:45:27,511 [DEBUG] contig 2017-11-14 09:45:27,511 [DEBUG] who? ref0055494.5e5 ref0055494.5e3 2017-11-14 09:45:27,511 [DEBUG] Grabbing contig between nodes ref0055494.5e5 & ref0055494.5e3 - [trim 0, 0] 2017-11-14 09:45:27,511 [DEBUG] contig 3315 to 3591 2017-11-14 09:45:27,511 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,511 [DEBUG] Moving from ref0055494.5e5 to ref0055494.4e3 (p=1) 2017-11-14 09:45:27,511 [DEBUG] unimproved gap 2017-11-14 09:45:27,511 [DEBUG] Moving from ref0055494.4e3 to ref0055494.4e5 (p=1) 2017-11-14 09:45:27,512 [DEBUG] contig 2017-11-14 09:45:27,512 [DEBUG] who? ref0055494.4e5 ref0055494.4e3 2017-11-14 09:45:27,512 [DEBUG] Grabbing contig between nodes ref0055494.4e5 & ref0055494.4e3 - [trim 0, 0] 2017-11-14 09:45:27,512 [DEBUG] contig 2740 to 2917 2017-11-14 09:45:27,512 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,512 [DEBUG] Moving from ref0055494.4e5 to ref0055494.3e3 (p=1) 2017-11-14 09:45:27,512 [DEBUG] unimproved gap 2017-11-14 09:45:27,512 [DEBUG] Moving from ref0055494.3e3 to ref0055494.3e5 (p=1) 2017-11-14 09:45:27,512 [DEBUG] contig 2017-11-14 09:45:27,512 [DEBUG] who? ref0055494.3e5 ref0055494.3e3 2017-11-14 09:45:27,512 [DEBUG] Grabbing contig between nodes ref0055494.3e5 & ref0055494.3e3 - [trim 0, 0] 2017-11-14 09:45:27,512 [DEBUG] contig 1797 to 2359 2017-11-14 09:45:27,512 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,513 [DEBUG] Moving from ref0055494.3e5 to ref0055494.2e3 (p=1) 2017-11-14 09:45:27,513 [DEBUG] unimproved gap 2017-11-14 09:45:27,513 [DEBUG] Moving from ref0055494.2e3 to ref0055494.2e5 (p=1) 2017-11-14 09:45:27,513 [DEBUG] contig 2017-11-14 09:45:27,513 [DEBUG] who? ref0055494.2e5 ref0055494.2e3 2017-11-14 09:45:27,513 [DEBUG] Grabbing contig between nodes ref0055494.2e5 & ref0055494.2e3 - [trim 0, 0] 2017-11-14 09:45:27,513 [DEBUG] contig 1449 to 1602 2017-11-14 09:45:27,513 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,513 [DEBUG] Moving from ref0055494.2e5 to ref0055494.1e3 (p=1) 2017-11-14 09:45:27,513 [DEBUG] unimproved gap 2017-11-14 09:45:27,513 [DEBUG] Moving from ref0055494.1e3 to ref0055494.1e5 (p=1) 2017-11-14 09:45:27,513 [DEBUG] contig 2017-11-14 09:45:27,513 [DEBUG] who? ref0055494.1e5 ref0055494.1e3 2017-11-14 09:45:27,514 [DEBUG] Grabbing contig between nodes ref0055494.1e5 & ref0055494.1e3 - [trim 0, 0] 2017-11-14 09:45:27,514 [DEBUG] contig 525 to 1252 2017-11-14 09:45:27,514 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,514 [DEBUG] Moving from ref0055494.1e5 to ref0055494.0e3 (p=1) 2017-11-14 09:45:27,514 [DEBUG] unimproved gap 2017-11-14 09:45:27,514 [DEBUG] Moving from ref0055494.0e3 to ref0055494e5 (p=1) 2017-11-14 09:45:27,514 [DEBUG] contig 2017-11-14 09:45:27,514 [DEBUG] who? ref0055494e5 ref0055494.0e3 2017-11-14 09:45:27,514 [DEBUG] Grabbing contig between nodes ref0055494e5 & ref0055494.0e3 - [trim 0, 0] 2017-11-14 09:45:27,514 [DEBUG] contig 0 to 200 2017-11-14 09:45:27,514 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,514 [DEBUG] FirstFlipping 10 2017-11-14 09:45:27,515 [DEBUG] Contig 11 2017-11-14 09:45:27,518 [DEBUG] Moving from ref0447600e5 to ref0447600.0e3 (p=1) 2017-11-14 09:45:27,518 [DEBUG] contig 2017-11-14 09:45:27,518 [DEBUG] who? ref0447600e5 ref0447600.0e3 2017-11-14 09:45:27,518 [DEBUG] Grabbing contig between nodes ref0447600e5 & ref0447600.0e3 - [trim 0, 0] 2017-11-14 09:45:27,518 [DEBUG] contig 0 to 303 2017-11-14 09:45:27,518 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,518 [DEBUG] Moving from ref0447600.0e3 to ref0447600.1e5 (p=1) 2017-11-14 09:45:27,518 [DEBUG] unimproved gap 2017-11-14 09:45:27,518 [DEBUG] Moving from ref0447600.1e5 to ref0447600.1e3 (p=1) 2017-11-14 09:45:27,518 [DEBUG] contig 2017-11-14 09:45:27,518 [DEBUG] who? ref0447600.1e5 ref0447600.1e3 2017-11-14 09:45:27,518 [DEBUG] Grabbing contig between nodes ref0447600.1e5 & ref0447600.1e3 - [trim 0, 0] 2017-11-14 09:45:27,518 [DEBUG] contig 848 to 1042 2017-11-14 09:45:27,519 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,519 [DEBUG] Moving from ref0447600.1e3 to ref0447600.2e5 (p=1) 2017-11-14 09:45:27,519 [DEBUG] unimproved gap 2017-11-14 09:45:27,519 [DEBUG] Moving from ref0447600.2e5 to ref0447600.2e3 (p=1) 2017-11-14 09:45:27,519 [DEBUG] contig 2017-11-14 09:45:27,519 [DEBUG] who? ref0447600.2e5 ref0447600.2e3 2017-11-14 09:45:27,519 [DEBUG] Grabbing contig between nodes ref0447600.2e5 & ref0447600.2e3 - [trim 0, 0] 2017-11-14 09:45:27,519 [DEBUG] contig 1106 to 1602 2017-11-14 09:45:27,519 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,519 [DEBUG] Moving from ref0447600.2e3 to ref0447600.3e5 (p=1) 2017-11-14 09:45:27,519 [DEBUG] unimproved gap 2017-11-14 09:45:27,519 [DEBUG] Moving from ref0447600.3e5 to ref0447600.3e3 (p=1) 2017-11-14 09:45:27,519 [DEBUG] contig 2017-11-14 09:45:27,519 [DEBUG] who? ref0447600.3e5 ref0447600.3e3 2017-11-14 09:45:27,520 [DEBUG] Grabbing contig between nodes ref0447600.3e5 & ref0447600.3e3 - [trim 0, 0] 2017-11-14 09:45:27,520 [DEBUG] contig 1990 to 2034 2017-11-14 09:45:27,520 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,520 [DEBUG] Moving from ref0447600.3e3 to ref0447600.4e5 (p=1) 2017-11-14 09:45:27,520 [DEBUG] unimproved gap 2017-11-14 09:45:27,520 [DEBUG] Moving from ref0447600.4e5 to ref0447600.4e3 (p=1) 2017-11-14 09:45:27,520 [DEBUG] contig 2017-11-14 09:45:27,520 [DEBUG] who? ref0447600.4e5 ref0447600.4e3 2017-11-14 09:45:27,520 [DEBUG] Grabbing contig between nodes ref0447600.4e5 & ref0447600.4e3 - [trim 0, 0] 2017-11-14 09:45:27,520 [DEBUG] contig 2348 to 2547 2017-11-14 09:45:27,520 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,520 [DEBUG] Moving from ref0447600.4e3 to ref0447600.5e5 (p=1) 2017-11-14 09:45:27,520 [DEBUG] unimproved gap 2017-11-14 09:45:27,521 [DEBUG] Moving from ref0447600.5e5 to ref0447600.5e3 (p=1) 2017-11-14 09:45:27,521 [DEBUG] contig 2017-11-14 09:45:27,521 [DEBUG] who? ref0447600.5e5 ref0447600.5e3 2017-11-14 09:45:27,521 [DEBUG] Grabbing contig between nodes ref0447600.5e5 & ref0447600.5e3 - [trim 0, 0] 2017-11-14 09:45:27,521 [DEBUG] contig 2688 to 4196 2017-11-14 09:45:27,521 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,521 [DEBUG] Moving from ref0447600.5e3 to ref0447600.6e5 (p=1) 2017-11-14 09:45:27,521 [DEBUG] unimproved gap 2017-11-14 09:45:27,521 [DEBUG] Moving from ref0447600.6e5 to ref0447600.6e3 (p=1) 2017-11-14 09:45:27,521 [DEBUG] contig 2017-11-14 09:45:27,521 [DEBUG] who? ref0447600.6e5 ref0447600.6e3 2017-11-14 09:45:27,521 [DEBUG] Grabbing contig between nodes ref0447600.6e5 & ref0447600.6e3 - [trim 0, 0] 2017-11-14 09:45:27,521 [DEBUG] contig 4556 to 5182 2017-11-14 09:45:27,522 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,522 [DEBUG] Moving from ref0447600.6e3 to ref0447600.7e5 (p=1) 2017-11-14 09:45:27,522 [DEBUG] unimproved gap 2017-11-14 09:45:27,522 [DEBUG] Moving from ref0447600.7e5 to ref0447600.7e3 (p=1) 2017-11-14 09:45:27,522 [DEBUG] contig 2017-11-14 09:45:27,522 [DEBUG] who? ref0447600.7e5 ref0447600.7e3 2017-11-14 09:45:27,522 [DEBUG] Grabbing contig between nodes ref0447600.7e5 & ref0447600.7e3 - [trim 0, 0] 2017-11-14 09:45:27,522 [DEBUG] contig 5216 to 5318 2017-11-14 09:45:27,522 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,522 [DEBUG] Moving from ref0447600.7e3 to ref0447600.8e5 (p=1) 2017-11-14 09:45:27,522 [DEBUG] unimproved gap 2017-11-14 09:45:27,522 [DEBUG] Moving from ref0447600.8e5 to ref0447600.8e3 (p=1) 2017-11-14 09:45:27,522 [DEBUG] contig 2017-11-14 09:45:27,522 [DEBUG] who? ref0447600.8e5 ref0447600.8e3 2017-11-14 09:45:27,523 [DEBUG] Grabbing contig between nodes ref0447600.8e5 & ref0447600.8e3 - [trim 0, 0] 2017-11-14 09:45:27,523 [DEBUG] contig 5421 to 6300 2017-11-14 09:45:27,523 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,523 [DEBUG] Moving from ref0447600.8e3 to ref0447600.9e5 (p=1) 2017-11-14 09:45:27,523 [DEBUG] unimproved gap 2017-11-14 09:45:27,523 [DEBUG] Moving from ref0447600.9e5 to ref0447600.9e3 (p=1) 2017-11-14 09:45:27,523 [DEBUG] contig 2017-11-14 09:45:27,523 [DEBUG] who? ref0447600.9e5 ref0447600.9e3 2017-11-14 09:45:27,523 [DEBUG] Grabbing contig between nodes ref0447600.9e5 & ref0447600.9e3 - [trim 0, 0] 2017-11-14 09:45:27,523 [DEBUG] contig 6860 to 11684 2017-11-14 09:45:27,523 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,523 [DEBUG] Moving from ref0447600.9e3 to ref0447600.10e5 (p=1) 2017-11-14 09:45:27,523 [DEBUG] unimproved gap 2017-11-14 09:45:27,524 [DEBUG] Moving from ref0447600.10e5 to ref0447600.10e3 (p=1) 2017-11-14 09:45:27,524 [DEBUG] contig 2017-11-14 09:45:27,524 [DEBUG] who? ref0447600.10e5 ref0447600.10e3 2017-11-14 09:45:27,524 [DEBUG] Grabbing contig between nodes ref0447600.10e5 & ref0447600.10e3 - [trim 0, 0] 2017-11-14 09:45:27,524 [DEBUG] contig 11810 to 11842 2017-11-14 09:45:27,524 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,524 [DEBUG] Moving from ref0447600.10e3 to ref0447600.11e5 (p=1) 2017-11-14 09:45:27,524 [DEBUG] unimproved gap 2017-11-14 09:45:27,524 [DEBUG] Moving from ref0447600.11e5 to ref0447600.11e3 (p=1) 2017-11-14 09:45:27,524 [DEBUG] contig 2017-11-14 09:45:27,524 [DEBUG] who? ref0447600.11e5 ref0447600.11e3 2017-11-14 09:45:27,524 [DEBUG] Grabbing contig between nodes ref0447600.11e5 & ref0447600.11e3 - [trim 0, 0] 2017-11-14 09:45:27,524 [DEBUG] contig 11875 to 13096 2017-11-14 09:45:27,525 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,525 [DEBUG] Moving from ref0447600.11e3 to ref0447600.12e5 (p=1) 2017-11-14 09:45:27,525 [DEBUG] unimproved gap 2017-11-14 09:45:27,525 [DEBUG] Moving from ref0447600.12e5 to ref0447600.12e3 (p=1) 2017-11-14 09:45:27,525 [DEBUG] contig 2017-11-14 09:45:27,525 [DEBUG] who? ref0447600.12e5 ref0447600.12e3 2017-11-14 09:45:27,525 [DEBUG] Grabbing contig between nodes ref0447600.12e5 & ref0447600.12e3 - [trim 0, 0] 2017-11-14 09:45:27,525 [DEBUG] contig 13529 to 14838 2017-11-14 09:45:27,525 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,525 [DEBUG] Moving from ref0447600.12e3 to ref0447600.13e5 (p=1) 2017-11-14 09:45:27,525 [DEBUG] unimproved gap 2017-11-14 09:45:27,525 [DEBUG] Moving from ref0447600.13e5 to ref0447600.13e3 (p=1) 2017-11-14 09:45:27,525 [DEBUG] contig 2017-11-14 09:45:27,525 [DEBUG] who? ref0447600.13e5 ref0447600.13e3 2017-11-14 09:45:27,526 [DEBUG] Grabbing contig between nodes ref0447600.13e5 & ref0447600.13e3 - [trim 0, 0] 2017-11-14 09:45:27,526 [DEBUG] contig 14927 to 18551 2017-11-14 09:45:27,526 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,526 [DEBUG] Moving from ref0447600.13e3 to ref0447600.14e5 (p=1) 2017-11-14 09:45:27,526 [DEBUG] unimproved gap 2017-11-14 09:45:27,526 [DEBUG] Moving from ref0447600.14e5 to ref0447600.14e3 (p=1) 2017-11-14 09:45:27,526 [DEBUG] contig 2017-11-14 09:45:27,526 [DEBUG] who? ref0447600.14e5 ref0447600.14e3 2017-11-14 09:45:27,526 [DEBUG] Grabbing contig between nodes ref0447600.14e5 & ref0447600.14e3 - [trim 0, 0] 2017-11-14 09:45:27,526 [DEBUG] contig 18711 to 21609 2017-11-14 09:45:27,526 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,526 [DEBUG] Moving from ref0447600.14e3 to ref0447600.15e5 (p=1) 2017-11-14 09:45:27,526 [DEBUG] unimproved gap 2017-11-14 09:45:27,527 [DEBUG] Moving from ref0447600.15e5 to ref0447600.15e3 (p=1) 2017-11-14 09:45:27,527 [DEBUG] contig 2017-11-14 09:45:27,527 [DEBUG] who? ref0447600.15e5 ref0447600.15e3 2017-11-14 09:45:27,527 [DEBUG] Grabbing contig between nodes ref0447600.15e5 & ref0447600.15e3 - [trim 0, 0] 2017-11-14 09:45:27,527 [DEBUG] contig 21719 to 21794 2017-11-14 09:45:27,527 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,527 [DEBUG] Moving from ref0447600.15e3 to ref0447600.16e5 (p=1) 2017-11-14 09:45:27,527 [DEBUG] unimproved gap 2017-11-14 09:45:27,527 [DEBUG] Moving from ref0447600.16e5 to ref0447600.16e3 (p=1) 2017-11-14 09:45:27,527 [DEBUG] contig 2017-11-14 09:45:27,527 [DEBUG] who? ref0447600.16e5 ref0447600.16e3 2017-11-14 09:45:27,527 [DEBUG] Grabbing contig between nodes ref0447600.16e5 & ref0447600.16e3 - [trim 0, 0] 2017-11-14 09:45:27,527 [DEBUG] contig 21943 to 22442 2017-11-14 09:45:27,527 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,528 [DEBUG] Moving from ref0447600.16e3 to ref0447600.17e5 (p=1) 2017-11-14 09:45:27,528 [DEBUG] unimproved gap 2017-11-14 09:45:27,528 [DEBUG] Moving from ref0447600.17e5 to ref0447600.17e3 (p=1) 2017-11-14 09:45:27,528 [DEBUG] contig 2017-11-14 09:45:27,528 [DEBUG] who? ref0447600.17e5 ref0447600.17e3 2017-11-14 09:45:27,528 [DEBUG] Grabbing contig between nodes ref0447600.17e5 & ref0447600.17e3 - [trim 0, 0] 2017-11-14 09:45:27,528 [DEBUG] contig 22900 to 24996 2017-11-14 09:45:27,528 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,528 [DEBUG] Moving from ref0447600.17e3 to ref0447600.18e5 (p=1) 2017-11-14 09:45:27,528 [DEBUG] unimproved gap 2017-11-14 09:45:27,528 [DEBUG] Moving from ref0447600.18e5 to ref0447600.18e3 (p=1) 2017-11-14 09:45:27,528 [DEBUG] contig 2017-11-14 09:45:27,528 [DEBUG] who? ref0447600.18e5 ref0447600.18e3 2017-11-14 09:45:27,529 [DEBUG] Grabbing contig between nodes ref0447600.18e5 & ref0447600.18e3 - [trim 0, 0] 2017-11-14 09:45:27,529 [DEBUG] contig 25203 to 25447 2017-11-14 09:45:27,529 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,529 [DEBUG] Moving from ref0447600.18e3 to ref0447600.19e5 (p=1) 2017-11-14 09:45:27,529 [DEBUG] unimproved gap 2017-11-14 09:45:27,529 [DEBUG] Moving from ref0447600.19e5 to ref0447600.19e3 (p=1) 2017-11-14 09:45:27,529 [DEBUG] contig 2017-11-14 09:45:27,529 [DEBUG] who? ref0447600.19e5 ref0447600.19e3 2017-11-14 09:45:27,529 [DEBUG] Grabbing contig between nodes ref0447600.19e5 & ref0447600.19e3 - [trim 0, 0] 2017-11-14 09:45:27,529 [DEBUG] contig 25487 to 25542 2017-11-14 09:45:27,529 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,529 [DEBUG] Moving from ref0447600.19e3 to ref0447600.20e5 (p=1) 2017-11-14 09:45:27,529 [DEBUG] unimproved gap 2017-11-14 09:45:27,530 [DEBUG] Moving from ref0447600.20e5 to ref0447600.20e3 (p=1) 2017-11-14 09:45:27,530 [DEBUG] contig 2017-11-14 09:45:27,530 [DEBUG] who? ref0447600.20e5 ref0447600.20e3 2017-11-14 09:45:27,530 [DEBUG] Grabbing contig between nodes ref0447600.20e5 & ref0447600.20e3 - [trim 0, 0] 2017-11-14 09:45:27,530 [DEBUG] contig 25668 to 25721 2017-11-14 09:45:27,530 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,530 [DEBUG] Moving from ref0447600.20e3 to ref0447600.21e5 (p=1) 2017-11-14 09:45:27,530 [DEBUG] unimproved gap 2017-11-14 09:45:27,530 [DEBUG] Moving from ref0447600.21e5 to ref0447600.21e3 (p=1) 2017-11-14 09:45:27,530 [DEBUG] contig 2017-11-14 09:45:27,530 [DEBUG] who? ref0447600.21e5 ref0447600.21e3 2017-11-14 09:45:27,530 [DEBUG] Grabbing contig between nodes ref0447600.21e5 & ref0447600.21e3 - [trim 0, 0] 2017-11-14 09:45:27,530 [DEBUG] contig 25914 to 25949 2017-11-14 09:45:27,530 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,531 [DEBUG] Moving from ref0447600.21e3 to ref0447600.22e5 (p=1) 2017-11-14 09:45:27,531 [DEBUG] unimproved gap 2017-11-14 09:45:27,531 [DEBUG] Moving from ref0447600.22e5 to ref0447600e3 (p=1) 2017-11-14 09:45:27,531 [DEBUG] contig 2017-11-14 09:45:27,531 [DEBUG] who? ref0447600.22e5 ref0447600e3 2017-11-14 09:45:27,531 [DEBUG] Grabbing contig between nodes ref0447600.22e5 & ref0447600e3 - [trim 0, 0] 2017-11-14 09:45:27,531 [DEBUG] contig 26202 to 29611 2017-11-14 09:45:27,531 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,531 [DEBUG] Contig 12 2017-11-14 09:45:27,534 [DEBUG] Moving from ref0398392e5 to ref0398392.0e3 (p=1) 2017-11-14 09:45:27,534 [DEBUG] contig 2017-11-14 09:45:27,534 [DEBUG] who? ref0398392e5 ref0398392.0e3 2017-11-14 09:45:27,534 [DEBUG] Grabbing contig between nodes ref0398392e5 & ref0398392.0e3 - [trim 0, 0] 2017-11-14 09:45:27,534 [DEBUG] contig 0 to 88 2017-11-14 09:45:27,535 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,535 [DEBUG] Moving from ref0398392.0e3 to ref0398392.1e5 (p=1) 2017-11-14 09:45:27,535 [DEBUG] unimproved gap 2017-11-14 09:45:27,535 [DEBUG] Moving from ref0398392.1e5 to ref0398392.1e3 (p=1) 2017-11-14 09:45:27,535 [DEBUG] contig 2017-11-14 09:45:27,535 [DEBUG] who? ref0398392.1e5 ref0398392.1e3 2017-11-14 09:45:27,535 [DEBUG] Grabbing contig between nodes ref0398392.1e5 & ref0398392.1e3 - [trim 0, 0] 2017-11-14 09:45:27,535 [DEBUG] contig 508 to 631 2017-11-14 09:45:27,535 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,535 [DEBUG] Moving from ref0398392.1e3 to ref0398392.2e5 (p=1) 2017-11-14 09:45:27,535 [DEBUG] unimproved gap 2017-11-14 09:45:27,535 [DEBUG] Moving from ref0398392.2e5 to ref0398392.2e3 (p=1) 2017-11-14 09:45:27,535 [DEBUG] contig 2017-11-14 09:45:27,536 [DEBUG] who? ref0398392.2e5 ref0398392.2e3 2017-11-14 09:45:27,536 [DEBUG] Grabbing contig between nodes ref0398392.2e5 & ref0398392.2e3 - [trim 0, 0] 2017-11-14 09:45:27,536 [DEBUG] contig 1046 to 4169 2017-11-14 09:45:27,536 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,536 [DEBUG] Moving from ref0398392.2e3 to ref0398392.3e5 (p=1) 2017-11-14 09:45:27,536 [DEBUG] unimproved gap 2017-11-14 09:45:27,536 [DEBUG] Moving from ref0398392.3e5 to ref0398392.3e3 (p=1) 2017-11-14 09:45:27,536 [DEBUG] contig 2017-11-14 09:45:27,536 [DEBUG] who? ref0398392.3e5 ref0398392.3e3 2017-11-14 09:45:27,536 [DEBUG] Grabbing contig between nodes ref0398392.3e5 & ref0398392.3e3 - [trim 0, 0] 2017-11-14 09:45:27,536 [DEBUG] contig 4230 to 5476 2017-11-14 09:45:27,536 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,536 [DEBUG] Moving from ref0398392.3e3 to ref0398392.4e5 (p=1) 2017-11-14 09:45:27,536 [DEBUG] unimproved gap 2017-11-14 09:45:27,537 [DEBUG] Moving from ref0398392.4e5 to ref0398392.4e3 (p=1) 2017-11-14 09:45:27,537 [DEBUG] contig 2017-11-14 09:45:27,537 [DEBUG] who? ref0398392.4e5 ref0398392.4e3 2017-11-14 09:45:27,537 [DEBUG] Grabbing contig between nodes ref0398392.4e5 & ref0398392.4e3 - [trim 0, 0] 2017-11-14 09:45:27,537 [DEBUG] contig 5629 to 8979 2017-11-14 09:45:27,537 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,537 [DEBUG] Moving from ref0398392.4e3 to ref0398392.5e5 (p=1) 2017-11-14 09:45:27,537 [DEBUG] unimproved gap 2017-11-14 09:45:27,537 [DEBUG] Moving from ref0398392.5e5 to ref0398392.5e3 (p=1) 2017-11-14 09:45:27,537 [DEBUG] contig 2017-11-14 09:45:27,537 [DEBUG] who? ref0398392.5e5 ref0398392.5e3 2017-11-14 09:45:27,537 [DEBUG] Grabbing contig between nodes ref0398392.5e5 & ref0398392.5e3 - [trim 0, 0] 2017-11-14 09:45:27,537 [DEBUG] contig 9410 to 11319 2017-11-14 09:45:27,538 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,538 [DEBUG] Moving from ref0398392.5e3 to ref0398392.6e5 (p=1) 2017-11-14 09:45:27,538 [DEBUG] unimproved gap 2017-11-14 09:45:27,538 [DEBUG] Moving from ref0398392.6e5 to ref0398392.6e3 (p=1) 2017-11-14 09:45:27,538 [DEBUG] contig 2017-11-14 09:45:27,538 [DEBUG] who? ref0398392.6e5 ref0398392.6e3 2017-11-14 09:45:27,538 [DEBUG] Grabbing contig between nodes ref0398392.6e5 & ref0398392.6e3 - [trim 0, 0] 2017-11-14 09:45:27,538 [DEBUG] contig 11906 to 13887 2017-11-14 09:45:27,538 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,538 [DEBUG] Moving from ref0398392.6e3 to ref0398392.7e5 (p=1) 2017-11-14 09:45:27,538 [DEBUG] unimproved gap 2017-11-14 09:45:27,538 [DEBUG] Moving from ref0398392.7e5 to ref0398392.7e3 (p=1) 2017-11-14 09:45:27,538 [DEBUG] contig 2017-11-14 09:45:27,538 [DEBUG] who? ref0398392.7e5 ref0398392.7e3 2017-11-14 09:45:27,539 [DEBUG] Grabbing contig between nodes ref0398392.7e5 & ref0398392.7e3 - [trim 0, 0] 2017-11-14 09:45:27,539 [DEBUG] contig 13951 to 14228 2017-11-14 09:45:27,539 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,539 [DEBUG] Moving from ref0398392.7e3 to ref0398392.8e5 (p=1) 2017-11-14 09:45:27,539 [DEBUG] unimproved gap 2017-11-14 09:45:27,539 [DEBUG] Moving from ref0398392.8e5 to ref0398392.8e3 (p=1) 2017-11-14 09:45:27,539 [DEBUG] contig 2017-11-14 09:45:27,539 [DEBUG] who? ref0398392.8e5 ref0398392.8e3 2017-11-14 09:45:27,539 [DEBUG] Grabbing contig between nodes ref0398392.8e5 & ref0398392.8e3 - [trim 0, 0] 2017-11-14 09:45:27,539 [DEBUG] contig 14492 to 16677 2017-11-14 09:45:27,539 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,539 [DEBUG] Moving from ref0398392.8e3 to ref0398392.9e5 (p=1) 2017-11-14 09:45:27,539 [DEBUG] unimproved gap 2017-11-14 09:45:27,540 [DEBUG] Moving from ref0398392.9e5 to ref0398392.9e3 (p=1) 2017-11-14 09:45:27,540 [DEBUG] contig 2017-11-14 09:45:27,540 [DEBUG] who? ref0398392.9e5 ref0398392.9e3 2017-11-14 09:45:27,540 [DEBUG] Grabbing contig between nodes ref0398392.9e5 & ref0398392.9e3 - [trim 0, 0] 2017-11-14 09:45:27,540 [DEBUG] contig 16740 to 16784 2017-11-14 09:45:27,540 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,540 [DEBUG] Moving from ref0398392.9e3 to ref0398392.10e5 (p=1) 2017-11-14 09:45:27,540 [DEBUG] unimproved gap 2017-11-14 09:45:27,540 [DEBUG] Moving from ref0398392.10e5 to ref0398392.10e3 (p=1) 2017-11-14 09:45:27,540 [DEBUG] contig 2017-11-14 09:45:27,540 [DEBUG] who? ref0398392.10e5 ref0398392.10e3 2017-11-14 09:45:27,540 [DEBUG] Grabbing contig between nodes ref0398392.10e5 & ref0398392.10e3 - [trim 0, 0] 2017-11-14 09:45:27,540 [DEBUG] contig 16814 to 19855 2017-11-14 09:45:27,541 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,541 [DEBUG] Moving from ref0398392.10e3 to ref0398392.11e5 (p=1) 2017-11-14 09:45:27,541 [DEBUG] unimproved gap 2017-11-14 09:45:27,541 [DEBUG] Moving from ref0398392.11e5 to ref0398392.11e3 (p=1) 2017-11-14 09:45:27,541 [DEBUG] contig 2017-11-14 09:45:27,541 [DEBUG] who? ref0398392.11e5 ref0398392.11e3 2017-11-14 09:45:27,541 [DEBUG] Grabbing contig between nodes ref0398392.11e5 & ref0398392.11e3 - [trim 0, 0] 2017-11-14 09:45:27,541 [DEBUG] contig 20049 to 22552 2017-11-14 09:45:27,541 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,541 [DEBUG] Moving from ref0398392.11e3 to ref0398392.12e5 (p=1) 2017-11-14 09:45:27,541 [DEBUG] unimproved gap 2017-11-14 09:45:27,541 [DEBUG] Moving from ref0398392.12e5 to ref0398392.12e3 (p=1) 2017-11-14 09:45:27,541 [DEBUG] contig 2017-11-14 09:45:27,541 [DEBUG] who? ref0398392.12e5 ref0398392.12e3 2017-11-14 09:45:27,542 [DEBUG] Grabbing contig between nodes ref0398392.12e5 & ref0398392.12e3 - [trim 0, 0] 2017-11-14 09:45:27,542 [DEBUG] contig 22731 to 22765 2017-11-14 09:45:27,542 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,542 [DEBUG] Moving from ref0398392.12e3 to ref0398392.13e5 (p=1) 2017-11-14 09:45:27,542 [DEBUG] unimproved gap 2017-11-14 09:45:27,542 [DEBUG] Moving from ref0398392.13e5 to ref0398392.13e3 (p=1) 2017-11-14 09:45:27,542 [DEBUG] contig 2017-11-14 09:45:27,542 [DEBUG] who? ref0398392.13e5 ref0398392.13e3 2017-11-14 09:45:27,542 [DEBUG] Grabbing contig between nodes ref0398392.13e5 & ref0398392.13e3 - [trim 0, 0] 2017-11-14 09:45:27,542 [DEBUG] contig 22892 to 23105 2017-11-14 09:45:27,542 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,542 [DEBUG] Moving from ref0398392.13e3 to ref0398392.14e5 (p=1) 2017-11-14 09:45:27,542 [DEBUG] unimproved gap 2017-11-14 09:45:27,543 [DEBUG] Moving from ref0398392.14e5 to ref0398392.14e3 (p=1) 2017-11-14 09:45:27,543 [DEBUG] contig 2017-11-14 09:45:27,543 [DEBUG] who? ref0398392.14e5 ref0398392.14e3 2017-11-14 09:45:27,543 [DEBUG] Grabbing contig between nodes ref0398392.14e5 & ref0398392.14e3 - [trim 0, 0] 2017-11-14 09:45:27,543 [DEBUG] contig 23358 to 25919 2017-11-14 09:45:27,543 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,543 [DEBUG] Moving from ref0398392.14e3 to ref0398392.15e5 (p=1) 2017-11-14 09:45:27,543 [DEBUG] unimproved gap 2017-11-14 09:45:27,543 [DEBUG] Moving from ref0398392.15e5 to ref0398392.15e3 (p=1) 2017-11-14 09:45:27,543 [DEBUG] contig 2017-11-14 09:45:27,543 [DEBUG] who? ref0398392.15e5 ref0398392.15e3 2017-11-14 09:45:27,543 [DEBUG] Grabbing contig between nodes ref0398392.15e5 & ref0398392.15e3 - [trim 0, 0] 2017-11-14 09:45:27,543 [DEBUG] contig 26218 to 28741 2017-11-14 09:45:27,543 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,544 [DEBUG] Moving from ref0398392.15e3 to ref0398392.16e5 (p=1) 2017-11-14 09:45:27,544 [DEBUG] unimproved gap 2017-11-14 09:45:27,544 [DEBUG] Moving from ref0398392.16e5 to ref0398392.16e3 (p=1) 2017-11-14 09:45:27,544 [DEBUG] contig 2017-11-14 09:45:27,544 [DEBUG] who? ref0398392.16e5 ref0398392.16e3 2017-11-14 09:45:27,544 [DEBUG] Grabbing contig between nodes ref0398392.16e5 & ref0398392.16e3 - [trim 0, 0] 2017-11-14 09:45:27,544 [DEBUG] contig 29122 to 29183 2017-11-14 09:45:27,544 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,544 [DEBUG] Moving from ref0398392.16e3 to ref0398392.17e5 (p=1) 2017-11-14 09:45:27,544 [DEBUG] unimproved gap 2017-11-14 09:45:27,544 [DEBUG] Moving from ref0398392.17e5 to ref0398392.17e3 (p=1) 2017-11-14 09:45:27,544 [DEBUG] contig 2017-11-14 09:45:27,544 [DEBUG] who? ref0398392.17e5 ref0398392.17e3 2017-11-14 09:45:27,545 [DEBUG] Grabbing contig between nodes ref0398392.17e5 & ref0398392.17e3 - [trim 0, 0] 2017-11-14 09:45:27,545 [DEBUG] contig 29452 to 29991 2017-11-14 09:45:27,545 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,545 [DEBUG] Moving from ref0398392.17e3 to ref0398392.18e5 (p=1) 2017-11-14 09:45:27,545 [DEBUG] unimproved gap 2017-11-14 09:45:27,545 [DEBUG] Moving from ref0398392.18e5 to ref0398392.18e3 (p=1) 2017-11-14 09:45:27,545 [DEBUG] contig 2017-11-14 09:45:27,545 [DEBUG] who? ref0398392.18e5 ref0398392.18e3 2017-11-14 09:45:27,545 [DEBUG] Grabbing contig between nodes ref0398392.18e5 & ref0398392.18e3 - [trim 0, 0] 2017-11-14 09:45:27,545 [DEBUG] contig 30038 to 33353 2017-11-14 09:45:27,545 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,545 [DEBUG] Moving from ref0398392.18e3 to ref0398392.19e5 (p=1) 2017-11-14 09:45:27,545 [DEBUG] unimproved gap 2017-11-14 09:45:27,546 [DEBUG] Moving from ref0398392.19e5 to ref0398392.19e3 (p=1) 2017-11-14 09:45:27,546 [DEBUG] contig 2017-11-14 09:45:27,546 [DEBUG] who? ref0398392.19e5 ref0398392.19e3 2017-11-14 09:45:27,546 [DEBUG] Grabbing contig between nodes ref0398392.19e5 & ref0398392.19e3 - [trim 0, 0] 2017-11-14 09:45:27,546 [DEBUG] contig 33421 to 36146 2017-11-14 09:45:27,546 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,546 [DEBUG] Moving from ref0398392.19e3 to ref0398392.20e5 (p=1) 2017-11-14 09:45:27,546 [DEBUG] unimproved gap 2017-11-14 09:45:27,546 [DEBUG] Moving from ref0398392.20e5 to ref0398392.20e3 (p=1) 2017-11-14 09:45:27,546 [DEBUG] contig 2017-11-14 09:45:27,546 [DEBUG] who? ref0398392.20e5 ref0398392.20e3 2017-11-14 09:45:27,546 [DEBUG] Grabbing contig between nodes ref0398392.20e5 & ref0398392.20e3 - [trim 0, 0] 2017-11-14 09:45:27,546 [DEBUG] contig 36519 to 37117 2017-11-14 09:45:27,546 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,547 [DEBUG] Moving from ref0398392.20e3 to ref0398392.21e5 (p=1) 2017-11-14 09:45:27,547 [DEBUG] unimproved gap 2017-11-14 09:45:27,547 [DEBUG] Moving from ref0398392.21e5 to ref0398392.21e3 (p=1) 2017-11-14 09:45:27,547 [DEBUG] contig 2017-11-14 09:45:27,547 [DEBUG] who? ref0398392.21e5 ref0398392.21e3 2017-11-14 09:45:27,547 [DEBUG] Grabbing contig between nodes ref0398392.21e5 & ref0398392.21e3 - [trim 0, 0] 2017-11-14 09:45:27,547 [DEBUG] contig 37472 to 42308 2017-11-14 09:45:27,547 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,547 [DEBUG] Moving from ref0398392.21e3 to ref0398392.22e5 (p=1) 2017-11-14 09:45:27,547 [DEBUG] unimproved gap 2017-11-14 09:45:27,547 [DEBUG] Moving from ref0398392.22e5 to ref0398392e3 (p=1) 2017-11-14 09:45:27,548 [DEBUG] contig 2017-11-14 09:45:27,548 [DEBUG] who? ref0398392.22e5 ref0398392e3 2017-11-14 09:45:27,548 [DEBUG] Grabbing contig between nodes ref0398392.22e5 & ref0398392e3 - [trim 0, 0] 2017-11-14 09:45:27,548 [DEBUG] contig 42810 to 44731 2017-11-14 09:45:27,548 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,548 [DEBUG] Contig 13 2017-11-14 09:45:27,551 [DEBUG] Moving from ref0090974e3 to ref0090974.21e5 (p=1) 2017-11-14 09:45:27,551 [DEBUG] contig 2017-11-14 09:45:27,551 [DEBUG] who? ref0090974.21e5 ref0090974e3 2017-11-14 09:45:27,551 [DEBUG] Grabbing contig between nodes ref0090974.21e5 & ref0090974e3 - [trim 0, 0] 2017-11-14 09:45:27,551 [DEBUG] contig 64420 to 65272 2017-11-14 09:45:27,551 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,551 [DEBUG] Moving from ref0090974.21e5 to ref0090974.20e3 (p=1) 2017-11-14 09:45:27,551 [DEBUG] unimproved gap 2017-11-14 09:45:27,551 [DEBUG] Moving from ref0090974.20e3 to ref0090974.20e5 (p=1) 2017-11-14 09:45:27,551 [DEBUG] contig 2017-11-14 09:45:27,551 [DEBUG] who? ref0090974.20e5 ref0090974.20e3 2017-11-14 09:45:27,552 [DEBUG] Grabbing contig between nodes ref0090974.20e5 & ref0090974.20e3 - [trim 0, 0] 2017-11-14 09:45:27,552 [DEBUG] contig 59021 to 64251 2017-11-14 09:45:27,552 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,552 [DEBUG] Moving from ref0090974.20e5 to ref0090974.19e3 (p=1) 2017-11-14 09:45:27,552 [DEBUG] unimproved gap 2017-11-14 09:45:27,552 [DEBUG] Moving from ref0090974.19e3 to ref0090974.19e5 (p=1) 2017-11-14 09:45:27,552 [DEBUG] contig 2017-11-14 09:45:27,552 [DEBUG] who? ref0090974.19e5 ref0090974.19e3 2017-11-14 09:45:27,552 [DEBUG] Grabbing contig between nodes ref0090974.19e5 & ref0090974.19e3 - [trim 0, 0] 2017-11-14 09:45:27,552 [DEBUG] contig 58907 to 58963 2017-11-14 09:45:27,552 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,552 [DEBUG] Moving from ref0090974.19e5 to ref0090974.18e3 (p=1) 2017-11-14 09:45:27,552 [DEBUG] unimproved gap 2017-11-14 09:45:27,553 [DEBUG] Moving from ref0090974.18e3 to ref0090974.18e5 (p=1) 2017-11-14 09:45:27,553 [DEBUG] contig 2017-11-14 09:45:27,553 [DEBUG] who? ref0090974.18e5 ref0090974.18e3 2017-11-14 09:45:27,553 [DEBUG] Grabbing contig between nodes ref0090974.18e5 & ref0090974.18e3 - [trim 0, 0] 2017-11-14 09:45:27,553 [DEBUG] contig 58762 to 58807 2017-11-14 09:45:27,553 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,553 [DEBUG] Moving from ref0090974.18e5 to ref0090974.17e3 (p=1) 2017-11-14 09:45:27,553 [DEBUG] unimproved gap 2017-11-14 09:45:27,553 [DEBUG] Moving from ref0090974.17e3 to ref0090974.17e5 (p=1) 2017-11-14 09:45:27,553 [DEBUG] contig 2017-11-14 09:45:27,553 [DEBUG] who? ref0090974.17e5 ref0090974.17e3 2017-11-14 09:45:27,553 [DEBUG] Grabbing contig between nodes ref0090974.17e5 & ref0090974.17e3 - [trim 0, 0] 2017-11-14 09:45:27,553 [DEBUG] contig 53388 to 58700 2017-11-14 09:45:27,554 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,554 [DEBUG] Moving from ref0090974.17e5 to ref0090974.16e3 (p=1) 2017-11-14 09:45:27,554 [DEBUG] unimproved gap 2017-11-14 09:45:27,554 [DEBUG] Moving from ref0090974.16e3 to ref0090974.16e5 (p=1) 2017-11-14 09:45:27,554 [DEBUG] contig 2017-11-14 09:45:27,554 [DEBUG] who? ref0090974.16e5 ref0090974.16e3 2017-11-14 09:45:27,554 [DEBUG] Grabbing contig between nodes ref0090974.16e5 & ref0090974.16e3 - [trim 0, 0] 2017-11-14 09:45:27,554 [DEBUG] contig 40785 to 53083 2017-11-14 09:45:27,554 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,554 [DEBUG] Moving from ref0090974.16e5 to ref0090974.15e3 (p=1) 2017-11-14 09:45:27,554 [DEBUG] unimproved gap 2017-11-14 09:45:27,554 [DEBUG] Moving from ref0090974.15e3 to ref0090974.15e5 (p=1) 2017-11-14 09:45:27,554 [DEBUG] contig 2017-11-14 09:45:27,554 [DEBUG] who? ref0090974.15e5 ref0090974.15e3 2017-11-14 09:45:27,555 [DEBUG] Grabbing contig between nodes ref0090974.15e5 & ref0090974.15e3 - [trim 0, 0] 2017-11-14 09:45:27,555 [DEBUG] contig 40576 to 40617 2017-11-14 09:45:27,555 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,555 [DEBUG] Moving from ref0090974.15e5 to ref0090974.14e3 (p=1) 2017-11-14 09:45:27,555 [DEBUG] unimproved gap 2017-11-14 09:45:27,555 [DEBUG] Moving from ref0090974.14e3 to ref0090974.14e5 (p=1) 2017-11-14 09:45:27,555 [DEBUG] contig 2017-11-14 09:45:27,555 [DEBUG] who? ref0090974.14e5 ref0090974.14e3 2017-11-14 09:45:27,555 [DEBUG] Grabbing contig between nodes ref0090974.14e5 & ref0090974.14e3 - [trim 0, 0] 2017-11-14 09:45:27,555 [DEBUG] contig 39999 to 40379 2017-11-14 09:45:27,555 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,555 [DEBUG] Moving from ref0090974.14e5 to ref0090974.13e3 (p=1) 2017-11-14 09:45:27,555 [DEBUG] unimproved gap 2017-11-14 09:45:27,556 [DEBUG] Moving from ref0090974.13e3 to ref0090974.13e5 (p=1) 2017-11-14 09:45:27,556 [DEBUG] contig 2017-11-14 09:45:27,556 [DEBUG] who? ref0090974.13e5 ref0090974.13e3 2017-11-14 09:45:27,556 [DEBUG] Grabbing contig between nodes ref0090974.13e5 & ref0090974.13e3 - [trim 0, 0] 2017-11-14 09:45:27,556 [DEBUG] contig 39597 to 39779 2017-11-14 09:45:27,556 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,556 [DEBUG] Moving from ref0090974.13e5 to ref0090974.12e3 (p=1) 2017-11-14 09:45:27,556 [DEBUG] unimproved gap 2017-11-14 09:45:27,556 [DEBUG] Moving from ref0090974.12e3 to ref0090974.12e5 (p=1) 2017-11-14 09:45:27,556 [DEBUG] contig 2017-11-14 09:45:27,556 [DEBUG] who? ref0090974.12e5 ref0090974.12e3 2017-11-14 09:45:27,556 [DEBUG] Grabbing contig between nodes ref0090974.12e5 & ref0090974.12e3 - [trim 0, 0] 2017-11-14 09:45:27,556 [DEBUG] contig 35208 to 39556 2017-11-14 09:45:27,557 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,557 [DEBUG] Moving from ref0090974.12e5 to ref0090974.11e3 (p=1) 2017-11-14 09:45:27,557 [DEBUG] unimproved gap 2017-11-14 09:45:27,557 [DEBUG] Moving from ref0090974.11e3 to ref0090974.11e5 (p=1) 2017-11-14 09:45:27,557 [DEBUG] contig 2017-11-14 09:45:27,557 [DEBUG] who? ref0090974.11e5 ref0090974.11e3 2017-11-14 09:45:27,557 [DEBUG] Grabbing contig between nodes ref0090974.11e5 & ref0090974.11e3 - [trim 0, 0] 2017-11-14 09:45:27,557 [DEBUG] contig 26008 to 35061 2017-11-14 09:45:27,557 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,557 [DEBUG] Moving from ref0090974.11e5 to ref0090974.10e3 (p=1) 2017-11-14 09:45:27,557 [DEBUG] unimproved gap 2017-11-14 09:45:27,557 [DEBUG] Moving from ref0090974.10e3 to ref0090974.10e5 (p=1) 2017-11-14 09:45:27,557 [DEBUG] contig 2017-11-14 09:45:27,558 [DEBUG] who? ref0090974.10e5 ref0090974.10e3 2017-11-14 09:45:27,558 [DEBUG] Grabbing contig between nodes ref0090974.10e5 & ref0090974.10e3 - [trim 0, 0] 2017-11-14 09:45:27,558 [DEBUG] contig 15313 to 25941 2017-11-14 09:45:27,558 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,558 [DEBUG] Moving from ref0090974.10e5 to ref0090974.9e3 (p=1) 2017-11-14 09:45:27,558 [DEBUG] unimproved gap 2017-11-14 09:45:27,558 [DEBUG] Moving from ref0090974.9e3 to ref0090974.9e5 (p=1) 2017-11-14 09:45:27,558 [DEBUG] contig 2017-11-14 09:45:27,558 [DEBUG] who? ref0090974.9e5 ref0090974.9e3 2017-11-14 09:45:27,558 [DEBUG] Grabbing contig between nodes ref0090974.9e5 & ref0090974.9e3 - [trim 0, 0] 2017-11-14 09:45:27,558 [DEBUG] contig 14836 to 15007 2017-11-14 09:45:27,558 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,558 [DEBUG] Moving from ref0090974.9e5 to ref0090974.8e3 (p=1) 2017-11-14 09:45:27,558 [DEBUG] unimproved gap 2017-11-14 09:45:27,559 [DEBUG] Moving from ref0090974.8e3 to ref0090974.8e5 (p=1) 2017-11-14 09:45:27,559 [DEBUG] contig 2017-11-14 09:45:27,559 [DEBUG] who? ref0090974.8e5 ref0090974.8e3 2017-11-14 09:45:27,559 [DEBUG] Grabbing contig between nodes ref0090974.8e5 & ref0090974.8e3 - [trim 0, 0] 2017-11-14 09:45:27,559 [DEBUG] contig 14106 to 14257 2017-11-14 09:45:27,559 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,559 [DEBUG] Moving from ref0090974.8e5 to ref0090974.7e3 (p=1) 2017-11-14 09:45:27,559 [DEBUG] unimproved gap 2017-11-14 09:45:27,559 [DEBUG] Moving from ref0090974.7e3 to ref0090974.7e5 (p=1) 2017-11-14 09:45:27,559 [DEBUG] contig 2017-11-14 09:45:27,559 [DEBUG] who? ref0090974.7e5 ref0090974.7e3 2017-11-14 09:45:27,559 [DEBUG] Grabbing contig between nodes ref0090974.7e5 & ref0090974.7e3 - [trim 0, 0] 2017-11-14 09:45:27,559 [DEBUG] contig 11124 to 13598 2017-11-14 09:45:27,560 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,560 [DEBUG] Moving from ref0090974.7e5 to ref0090974.6e3 (p=1) 2017-11-14 09:45:27,560 [DEBUG] unimproved gap 2017-11-14 09:45:27,560 [DEBUG] Moving from ref0090974.6e3 to ref0090974.6e5 (p=1) 2017-11-14 09:45:27,560 [DEBUG] contig 2017-11-14 09:45:27,560 [DEBUG] who? ref0090974.6e5 ref0090974.6e3 2017-11-14 09:45:27,560 [DEBUG] Grabbing contig between nodes ref0090974.6e5 & ref0090974.6e3 - [trim 0, 0] 2017-11-14 09:45:27,560 [DEBUG] contig 8800 to 11053 2017-11-14 09:45:27,560 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,560 [DEBUG] Moving from ref0090974.6e5 to ref0090974.5e3 (p=1) 2017-11-14 09:45:27,560 [DEBUG] unimproved gap 2017-11-14 09:45:27,560 [DEBUG] Moving from ref0090974.5e3 to ref0090974.5e5 (p=1) 2017-11-14 09:45:27,560 [DEBUG] contig 2017-11-14 09:45:27,560 [DEBUG] who? ref0090974.5e5 ref0090974.5e3 2017-11-14 09:45:27,561 [DEBUG] Grabbing contig between nodes ref0090974.5e5 & ref0090974.5e3 - [trim 0, 0] 2017-11-14 09:45:27,561 [DEBUG] contig 8133 to 8749 2017-11-14 09:45:27,561 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,561 [DEBUG] Moving from ref0090974.5e5 to ref0090974.4e3 (p=1) 2017-11-14 09:45:27,561 [DEBUG] unimproved gap 2017-11-14 09:45:27,561 [DEBUG] Moving from ref0090974.4e3 to ref0090974.4e5 (p=1) 2017-11-14 09:45:27,561 [DEBUG] contig 2017-11-14 09:45:27,561 [DEBUG] who? ref0090974.4e5 ref0090974.4e3 2017-11-14 09:45:27,561 [DEBUG] Grabbing contig between nodes ref0090974.4e5 & ref0090974.4e3 - [trim 0, 0] 2017-11-14 09:45:27,561 [DEBUG] contig 7485 to 8084 2017-11-14 09:45:27,561 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,561 [DEBUG] Moving from ref0090974.4e5 to ref0090974.3e3 (p=1) 2017-11-14 09:45:27,561 [DEBUG] unimproved gap 2017-11-14 09:45:27,562 [DEBUG] Moving from ref0090974.3e3 to ref0090974.3e5 (p=1) 2017-11-14 09:45:27,562 [DEBUG] contig 2017-11-14 09:45:27,562 [DEBUG] who? ref0090974.3e5 ref0090974.3e3 2017-11-14 09:45:27,562 [DEBUG] Grabbing contig between nodes ref0090974.3e5 & ref0090974.3e3 - [trim 0, 0] 2017-11-14 09:45:27,562 [DEBUG] contig 3298 to 7094 2017-11-14 09:45:27,562 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,562 [DEBUG] Moving from ref0090974.3e5 to ref0090974.2e3 (p=1) 2017-11-14 09:45:27,562 [DEBUG] unimproved gap 2017-11-14 09:45:27,562 [DEBUG] Moving from ref0090974.2e3 to ref0090974.2e5 (p=1) 2017-11-14 09:45:27,562 [DEBUG] contig 2017-11-14 09:45:27,562 [DEBUG] who? ref0090974.2e5 ref0090974.2e3 2017-11-14 09:45:27,562 [DEBUG] Grabbing contig between nodes ref0090974.2e5 & ref0090974.2e3 - [trim 0, 0] 2017-11-14 09:45:27,562 [DEBUG] contig 1960 to 3247 2017-11-14 09:45:27,562 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,563 [DEBUG] Moving from ref0090974.2e5 to ref0090974.1e3 (p=1) 2017-11-14 09:45:27,563 [DEBUG] unimproved gap 2017-11-14 09:45:27,563 [DEBUG] Moving from ref0090974.1e3 to ref0090974.1e5 (p=1) 2017-11-14 09:45:27,563 [DEBUG] contig 2017-11-14 09:45:27,563 [DEBUG] who? ref0090974.1e5 ref0090974.1e3 2017-11-14 09:45:27,563 [DEBUG] Grabbing contig between nodes ref0090974.1e5 & ref0090974.1e3 - [trim 0, 0] 2017-11-14 09:45:27,563 [DEBUG] contig 1469 to 1637 2017-11-14 09:45:27,563 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,563 [DEBUG] Moving from ref0090974.1e5 to ref0090974.0e3 (p=1) 2017-11-14 09:45:27,563 [DEBUG] unimproved gap 2017-11-14 09:45:27,563 [DEBUG] Moving from ref0090974.0e3 to ref0090974e5 (p=1) 2017-11-14 09:45:27,563 [DEBUG] contig 2017-11-14 09:45:27,563 [DEBUG] who? ref0090974e5 ref0090974.0e3 2017-11-14 09:45:27,564 [DEBUG] Grabbing contig between nodes ref0090974e5 & ref0090974.0e3 - [trim 0, 0] 2017-11-14 09:45:27,564 [DEBUG] contig 0 to 1154 2017-11-14 09:45:27,564 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,564 [DEBUG] FirstFlipping 13 2017-11-14 09:45:27,564 [DEBUG] Contig 14 2017-11-14 09:45:27,567 [DEBUG] Moving from ref0223690e5 to ref0223690.0e3 (p=1) 2017-11-14 09:45:27,567 [DEBUG] contig 2017-11-14 09:45:27,567 [DEBUG] who? ref0223690e5 ref0223690.0e3 2017-11-14 09:45:27,567 [DEBUG] Grabbing contig between nodes ref0223690e5 & ref0223690.0e3 - [trim 0, 0] 2017-11-14 09:45:27,567 [DEBUG] contig 0 to 781 2017-11-14 09:45:27,567 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,568 [DEBUG] Moving from ref0223690.0e3 to ref0223690.1e5 (p=1) 2017-11-14 09:45:27,568 [DEBUG] unimproved gap 2017-11-14 09:45:27,568 [DEBUG] Moving from ref0223690.1e5 to ref0223690.1e3 (p=1) 2017-11-14 09:45:27,568 [DEBUG] contig 2017-11-14 09:45:27,568 [DEBUG] who? ref0223690.1e5 ref0223690.1e3 2017-11-14 09:45:27,568 [DEBUG] Grabbing contig between nodes ref0223690.1e5 & ref0223690.1e3 - [trim 0, 0] 2017-11-14 09:45:27,568 [DEBUG] contig 807 to 848 2017-11-14 09:45:27,568 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,568 [DEBUG] Moving from ref0223690.1e3 to ref0223690.2e5 (p=1) 2017-11-14 09:45:27,568 [DEBUG] unimproved gap 2017-11-14 09:45:27,568 [DEBUG] Moving from ref0223690.2e5 to ref0223690.2e3 (p=1) 2017-11-14 09:45:27,568 [DEBUG] contig 2017-11-14 09:45:27,568 [DEBUG] who? ref0223690.2e5 ref0223690.2e3 2017-11-14 09:45:27,568 [DEBUG] Grabbing contig between nodes ref0223690.2e5 & ref0223690.2e3 - [trim 0, 0] 2017-11-14 09:45:27,569 [DEBUG] contig 900 to 937 2017-11-14 09:45:27,569 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,569 [DEBUG] Moving from ref0223690.2e3 to ref0223690.3e5 (p=1) 2017-11-14 09:45:27,569 [DEBUG] unimproved gap 2017-11-14 09:45:27,569 [DEBUG] Moving from ref0223690.3e5 to ref0223690.3e3 (p=1) 2017-11-14 09:45:27,569 [DEBUG] contig 2017-11-14 09:45:27,569 [DEBUG] who? ref0223690.3e5 ref0223690.3e3 2017-11-14 09:45:27,569 [DEBUG] Grabbing contig between nodes ref0223690.3e5 & ref0223690.3e3 - [trim 0, 0] 2017-11-14 09:45:27,569 [DEBUG] contig 1040 to 2062 2017-11-14 09:45:27,569 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,569 [DEBUG] Moving from ref0223690.3e3 to ref0223690.4e5 (p=1) 2017-11-14 09:45:27,569 [DEBUG] unimproved gap 2017-11-14 09:45:27,569 [DEBUG] Moving from ref0223690.4e5 to ref0223690.4e3 (p=1) 2017-11-14 09:45:27,570 [DEBUG] contig 2017-11-14 09:45:27,570 [DEBUG] who? ref0223690.4e5 ref0223690.4e3 2017-11-14 09:45:27,570 [DEBUG] Grabbing contig between nodes ref0223690.4e5 & ref0223690.4e3 - [trim 0, 0] 2017-11-14 09:45:27,570 [DEBUG] contig 2104 to 3092 2017-11-14 09:45:27,570 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,570 [DEBUG] Moving from ref0223690.4e3 to ref0223690.5e5 (p=1) 2017-11-14 09:45:27,570 [DEBUG] unimproved gap 2017-11-14 09:45:27,570 [DEBUG] Moving from ref0223690.5e5 to ref0223690.5e3 (p=1) 2017-11-14 09:45:27,570 [DEBUG] contig 2017-11-14 09:45:27,570 [DEBUG] who? ref0223690.5e5 ref0223690.5e3 2017-11-14 09:45:27,570 [DEBUG] Grabbing contig between nodes ref0223690.5e5 & ref0223690.5e3 - [trim 0, 0] 2017-11-14 09:45:27,570 [DEBUG] contig 3397 to 3454 2017-11-14 09:45:27,570 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,571 [DEBUG] Moving from ref0223690.5e3 to ref0223690.6e5 (p=1) 2017-11-14 09:45:27,571 [DEBUG] unimproved gap 2017-11-14 09:45:27,571 [DEBUG] Moving from ref0223690.6e5 to ref0223690.6e3 (p=1) 2017-11-14 09:45:27,571 [DEBUG] contig 2017-11-14 09:45:27,571 [DEBUG] who? ref0223690.6e5 ref0223690.6e3 2017-11-14 09:45:27,571 [DEBUG] Grabbing contig between nodes ref0223690.6e5 & ref0223690.6e3 - [trim 0, 0] 2017-11-14 09:45:27,571 [DEBUG] contig 4049 to 4136 2017-11-14 09:45:27,571 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,571 [DEBUG] Moving from ref0223690.6e3 to ref0223690.7e5 (p=1) 2017-11-14 09:45:27,571 [DEBUG] unimproved gap 2017-11-14 09:45:27,571 [DEBUG] Moving from ref0223690.7e5 to ref0223690.7e3 (p=1) 2017-11-14 09:45:27,571 [DEBUG] contig 2017-11-14 09:45:27,571 [DEBUG] who? ref0223690.7e5 ref0223690.7e3 2017-11-14 09:45:27,571 [DEBUG] Grabbing contig between nodes ref0223690.7e5 & ref0223690.7e3 - [trim 0, 0] 2017-11-14 09:45:27,572 [DEBUG] contig 4405 to 4537 2017-11-14 09:45:27,572 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,572 [DEBUG] Moving from ref0223690.7e3 to ref0223690.8e5 (p=1) 2017-11-14 09:45:27,572 [DEBUG] unimproved gap 2017-11-14 09:45:27,572 [DEBUG] Moving from ref0223690.8e5 to ref0223690.8e3 (p=1) 2017-11-14 09:45:27,572 [DEBUG] contig 2017-11-14 09:45:27,572 [DEBUG] who? ref0223690.8e5 ref0223690.8e3 2017-11-14 09:45:27,572 [DEBUG] Grabbing contig between nodes ref0223690.8e5 & ref0223690.8e3 - [trim 0, 0] 2017-11-14 09:45:27,572 [DEBUG] contig 5090 to 6185 2017-11-14 09:45:27,572 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,572 [DEBUG] Moving from ref0223690.8e3 to ref0223690.9e5 (p=1) 2017-11-14 09:45:27,572 [DEBUG] unimproved gap 2017-11-14 09:45:27,572 [DEBUG] Moving from ref0223690.9e5 to ref0223690.9e3 (p=1) 2017-11-14 09:45:27,573 [DEBUG] contig 2017-11-14 09:45:27,573 [DEBUG] who? ref0223690.9e5 ref0223690.9e3 2017-11-14 09:45:27,573 [DEBUG] Grabbing contig between nodes ref0223690.9e5 & ref0223690.9e3 - [trim 0, 0] 2017-11-14 09:45:27,573 [DEBUG] contig 6235 to 6284 2017-11-14 09:45:27,573 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,573 [DEBUG] Moving from ref0223690.9e3 to ref0223690.10e5 (p=1) 2017-11-14 09:45:27,573 [DEBUG] unimproved gap 2017-11-14 09:45:27,573 [DEBUG] Moving from ref0223690.10e5 to ref0223690.10e3 (p=1) 2017-11-14 09:45:27,573 [DEBUG] contig 2017-11-14 09:45:27,573 [DEBUG] who? ref0223690.10e5 ref0223690.10e3 2017-11-14 09:45:27,573 [DEBUG] Grabbing contig between nodes ref0223690.10e5 & ref0223690.10e3 - [trim 0, 0] 2017-11-14 09:45:27,573 [DEBUG] contig 6355 to 6556 2017-11-14 09:45:27,573 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,573 [DEBUG] Moving from ref0223690.10e3 to ref0223690.11e5 (p=1) 2017-11-14 09:45:27,574 [DEBUG] unimproved gap 2017-11-14 09:45:27,574 [DEBUG] Moving from ref0223690.11e5 to ref0223690.11e3 (p=1) 2017-11-14 09:45:27,574 [DEBUG] contig 2017-11-14 09:45:27,574 [DEBUG] who? ref0223690.11e5 ref0223690.11e3 2017-11-14 09:45:27,574 [DEBUG] Grabbing contig between nodes ref0223690.11e5 & ref0223690.11e3 - [trim 0, 0] 2017-11-14 09:45:27,574 [DEBUG] contig 6644 to 6801 2017-11-14 09:45:27,574 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,574 [DEBUG] Moving from ref0223690.11e3 to ref0223690.12e5 (p=1) 2017-11-14 09:45:27,574 [DEBUG] unimproved gap 2017-11-14 09:45:27,574 [DEBUG] Moving from ref0223690.12e5 to ref0223690.12e3 (p=1) 2017-11-14 09:45:27,574 [DEBUG] contig 2017-11-14 09:45:27,574 [DEBUG] who? ref0223690.12e5 ref0223690.12e3 2017-11-14 09:45:27,574 [DEBUG] Grabbing contig between nodes ref0223690.12e5 & ref0223690.12e3 - [trim 0, 0] 2017-11-14 09:45:27,575 [DEBUG] contig 6915 to 8188 2017-11-14 09:45:27,575 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,575 [DEBUG] Moving from ref0223690.12e3 to ref0223690.13e5 (p=1) 2017-11-14 09:45:27,575 [DEBUG] unimproved gap 2017-11-14 09:45:27,575 [DEBUG] Moving from ref0223690.13e5 to ref0223690.13e3 (p=1) 2017-11-14 09:45:27,575 [DEBUG] contig 2017-11-14 09:45:27,575 [DEBUG] who? ref0223690.13e5 ref0223690.13e3 2017-11-14 09:45:27,575 [DEBUG] Grabbing contig between nodes ref0223690.13e5 & ref0223690.13e3 - [trim 0, 0] 2017-11-14 09:45:27,575 [DEBUG] contig 8448 to 9709 2017-11-14 09:45:27,575 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,575 [DEBUG] Moving from ref0223690.13e3 to ref0223690.14e5 (p=1) 2017-11-14 09:45:27,575 [DEBUG] unimproved gap 2017-11-14 09:45:27,575 [DEBUG] Moving from ref0223690.14e5 to ref0223690.14e3 (p=1) 2017-11-14 09:45:27,576 [DEBUG] contig 2017-11-14 09:45:27,576 [DEBUG] who? ref0223690.14e5 ref0223690.14e3 2017-11-14 09:45:27,576 [DEBUG] Grabbing contig between nodes ref0223690.14e5 & ref0223690.14e3 - [trim 0, 0] 2017-11-14 09:45:27,576 [DEBUG] contig 9906 to 10349 2017-11-14 09:45:27,576 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,576 [DEBUG] Moving from ref0223690.14e3 to ref0223690.15e5 (p=1) 2017-11-14 09:45:27,576 [DEBUG] unimproved gap 2017-11-14 09:45:27,576 [DEBUG] Moving from ref0223690.15e5 to ref0223690.15e3 (p=1) 2017-11-14 09:45:27,576 [DEBUG] contig 2017-11-14 09:45:27,576 [DEBUG] who? ref0223690.15e5 ref0223690.15e3 2017-11-14 09:45:27,576 [DEBUG] Grabbing contig between nodes ref0223690.15e5 & ref0223690.15e3 - [trim 0, 0] 2017-11-14 09:45:27,576 [DEBUG] contig 10642 to 12494 2017-11-14 09:45:27,576 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,576 [DEBUG] Moving from ref0223690.15e3 to ref0223690.16e5 (p=1) 2017-11-14 09:45:27,577 [DEBUG] unimproved gap 2017-11-14 09:45:27,577 [DEBUG] Moving from ref0223690.16e5 to ref0223690.16e3 (p=1) 2017-11-14 09:45:27,577 [DEBUG] contig 2017-11-14 09:45:27,577 [DEBUG] who? ref0223690.16e5 ref0223690.16e3 2017-11-14 09:45:27,577 [DEBUG] Grabbing contig between nodes ref0223690.16e5 & ref0223690.16e3 - [trim 0, 0] 2017-11-14 09:45:27,577 [DEBUG] contig 12846 to 13531 2017-11-14 09:45:27,577 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,577 [DEBUG] Moving from ref0223690.16e3 to ref0223690.17e5 (p=1) 2017-11-14 09:45:27,577 [DEBUG] unimproved gap 2017-11-14 09:45:27,577 [DEBUG] Moving from ref0223690.17e5 to ref0223690.17e3 (p=1) 2017-11-14 09:45:27,577 [DEBUG] contig 2017-11-14 09:45:27,577 [DEBUG] who? ref0223690.17e5 ref0223690.17e3 2017-11-14 09:45:27,577 [DEBUG] Grabbing contig between nodes ref0223690.17e5 & ref0223690.17e3 - [trim 0, 0] 2017-11-14 09:45:27,578 [DEBUG] contig 13651 to 17753 2017-11-14 09:45:27,578 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,578 [DEBUG] Moving from ref0223690.17e3 to ref0223690.18e5 (p=1) 2017-11-14 09:45:27,578 [DEBUG] unimproved gap 2017-11-14 09:45:27,578 [DEBUG] Moving from ref0223690.18e5 to ref0223690.18e3 (p=1) 2017-11-14 09:45:27,578 [DEBUG] contig 2017-11-14 09:45:27,578 [DEBUG] who? ref0223690.18e5 ref0223690.18e3 2017-11-14 09:45:27,578 [DEBUG] Grabbing contig between nodes ref0223690.18e5 & ref0223690.18e3 - [trim 0, 0] 2017-11-14 09:45:27,578 [DEBUG] contig 17953 to 19065 2017-11-14 09:45:27,578 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,578 [DEBUG] Moving from ref0223690.18e3 to ref0223690.19e5 (p=1) 2017-11-14 09:45:27,578 [DEBUG] unimproved gap 2017-11-14 09:45:27,578 [DEBUG] Moving from ref0223690.19e5 to ref0223690.19e3 (p=1) 2017-11-14 09:45:27,578 [DEBUG] contig 2017-11-14 09:45:27,579 [DEBUG] who? ref0223690.19e5 ref0223690.19e3 2017-11-14 09:45:27,579 [DEBUG] Grabbing contig between nodes ref0223690.19e5 & ref0223690.19e3 - [trim 0, 0] 2017-11-14 09:45:27,579 [DEBUG] contig 19103 to 19217 2017-11-14 09:45:27,579 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,579 [DEBUG] Moving from ref0223690.19e3 to ref0223690.20e5 (p=1) 2017-11-14 09:45:27,579 [DEBUG] unimproved gap 2017-11-14 09:45:27,579 [DEBUG] Moving from ref0223690.20e5 to ref0223690.20e3 (p=1) 2017-11-14 09:45:27,579 [DEBUG] contig 2017-11-14 09:45:27,579 [DEBUG] who? ref0223690.20e5 ref0223690.20e3 2017-11-14 09:45:27,579 [DEBUG] Grabbing contig between nodes ref0223690.20e5 & ref0223690.20e3 - [trim 0, 0] 2017-11-14 09:45:27,579 [DEBUG] contig 19270 to 19418 2017-11-14 09:45:27,579 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,579 [DEBUG] Moving from ref0223690.20e3 to ref0223690.21e5 (p=1) 2017-11-14 09:45:27,580 [DEBUG] unimproved gap 2017-11-14 09:45:27,580 [DEBUG] Moving from ref0223690.21e5 to ref0223690e3 (p=1) 2017-11-14 09:45:27,580 [DEBUG] contig 2017-11-14 09:45:27,580 [DEBUG] who? ref0223690.21e5 ref0223690e3 2017-11-14 09:45:27,580 [DEBUG] Grabbing contig between nodes ref0223690.21e5 & ref0223690e3 - [trim 0, 0] 2017-11-14 09:45:27,580 [DEBUG] contig 19460 to 19590 2017-11-14 09:45:27,580 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,580 [DEBUG] Contig 15 2017-11-14 09:45:27,583 [DEBUG] Moving from ref0085797e3 to ref0085797.21e5 (p=1) 2017-11-14 09:45:27,583 [DEBUG] contig 2017-11-14 09:45:27,583 [DEBUG] who? ref0085797.21e5 ref0085797e3 2017-11-14 09:45:27,583 [DEBUG] Grabbing contig between nodes ref0085797.21e5 & ref0085797e3 - [trim 0, 0] 2017-11-14 09:45:27,583 [DEBUG] contig 14136 to 14240 2017-11-14 09:45:27,583 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,583 [DEBUG] Moving from ref0085797.21e5 to ref0085797.20e3 (p=1) 2017-11-14 09:45:27,583 [DEBUG] unimproved gap 2017-11-14 09:45:27,583 [DEBUG] Moving from ref0085797.20e3 to ref0085797.20e5 (p=1) 2017-11-14 09:45:27,583 [DEBUG] contig 2017-11-14 09:45:27,584 [DEBUG] who? ref0085797.20e5 ref0085797.20e3 2017-11-14 09:45:27,584 [DEBUG] Grabbing contig between nodes ref0085797.20e5 & ref0085797.20e3 - [trim 0, 0] 2017-11-14 09:45:27,584 [DEBUG] contig 13418 to 14088 2017-11-14 09:45:27,584 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,584 [DEBUG] Moving from ref0085797.20e5 to ref0085797.19e3 (p=1) 2017-11-14 09:45:27,584 [DEBUG] unimproved gap 2017-11-14 09:45:27,584 [DEBUG] Moving from ref0085797.19e3 to ref0085797.19e5 (p=1) 2017-11-14 09:45:27,584 [DEBUG] contig 2017-11-14 09:45:27,584 [DEBUG] who? ref0085797.19e5 ref0085797.19e3 2017-11-14 09:45:27,584 [DEBUG] Grabbing contig between nodes ref0085797.19e5 & ref0085797.19e3 - [trim 0, 0] 2017-11-14 09:45:27,584 [DEBUG] contig 12569 to 13215 2017-11-14 09:45:27,584 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,584 [DEBUG] Moving from ref0085797.19e5 to ref0085797.18e3 (p=1) 2017-11-14 09:45:27,585 [DEBUG] unimproved gap 2017-11-14 09:45:27,585 [DEBUG] Moving from ref0085797.18e3 to ref0085797.18e5 (p=1) 2017-11-14 09:45:27,585 [DEBUG] contig 2017-11-14 09:45:27,585 [DEBUG] who? ref0085797.18e5 ref0085797.18e3 2017-11-14 09:45:27,585 [DEBUG] Grabbing contig between nodes ref0085797.18e5 & ref0085797.18e3 - [trim 0, 0] 2017-11-14 09:45:27,585 [DEBUG] contig 11023 to 12440 2017-11-14 09:45:27,585 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,585 [DEBUG] Moving from ref0085797.18e5 to ref0085797.17e3 (p=1) 2017-11-14 09:45:27,585 [DEBUG] unimproved gap 2017-11-14 09:45:27,585 [DEBUG] Moving from ref0085797.17e3 to ref0085797.17e5 (p=1) 2017-11-14 09:45:27,585 [DEBUG] contig 2017-11-14 09:45:27,585 [DEBUG] who? ref0085797.17e5 ref0085797.17e3 2017-11-14 09:45:27,585 [DEBUG] Grabbing contig between nodes ref0085797.17e5 & ref0085797.17e3 - [trim 0, 0] 2017-11-14 09:45:27,585 [DEBUG] contig 10863 to 10895 2017-11-14 09:45:27,586 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,586 [DEBUG] Moving from ref0085797.17e5 to ref0085797.16e3 (p=1) 2017-11-14 09:45:27,586 [DEBUG] unimproved gap 2017-11-14 09:45:27,586 [DEBUG] Moving from ref0085797.16e3 to ref0085797.16e5 (p=1) 2017-11-14 09:45:27,586 [DEBUG] contig 2017-11-14 09:45:27,586 [DEBUG] who? ref0085797.16e5 ref0085797.16e3 2017-11-14 09:45:27,586 [DEBUG] Grabbing contig between nodes ref0085797.16e5 & ref0085797.16e3 - [trim 0, 0] 2017-11-14 09:45:27,586 [DEBUG] contig 10666 to 10735 2017-11-14 09:45:27,586 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,586 [DEBUG] Moving from ref0085797.16e5 to ref0085797.15e3 (p=1) 2017-11-14 09:45:27,586 [DEBUG] unimproved gap 2017-11-14 09:45:27,586 [DEBUG] Moving from ref0085797.15e3 to ref0085797.15e5 (p=1) 2017-11-14 09:45:27,586 [DEBUG] contig 2017-11-14 09:45:27,587 [DEBUG] who? ref0085797.15e5 ref0085797.15e3 2017-11-14 09:45:27,587 [DEBUG] Grabbing contig between nodes ref0085797.15e5 & ref0085797.15e3 - [trim 0, 0] 2017-11-14 09:45:27,587 [DEBUG] contig 10432 to 10608 2017-11-14 09:45:27,587 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,587 [DEBUG] Moving from ref0085797.15e5 to ref0085797.14e3 (p=1) 2017-11-14 09:45:27,587 [DEBUG] unimproved gap 2017-11-14 09:45:27,587 [DEBUG] Moving from ref0085797.14e3 to ref0085797.14e5 (p=1) 2017-11-14 09:45:27,587 [DEBUG] contig 2017-11-14 09:45:27,587 [DEBUG] who? ref0085797.14e5 ref0085797.14e3 2017-11-14 09:45:27,587 [DEBUG] Grabbing contig between nodes ref0085797.14e5 & ref0085797.14e3 - [trim 0, 0] 2017-11-14 09:45:27,587 [DEBUG] contig 9951 to 10223 2017-11-14 09:45:27,587 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,587 [DEBUG] Moving from ref0085797.14e5 to ref0085797.13e3 (p=1) 2017-11-14 09:45:27,587 [DEBUG] unimproved gap 2017-11-14 09:45:27,588 [DEBUG] Moving from ref0085797.13e3 to ref0085797.13e5 (p=1) 2017-11-14 09:45:27,588 [DEBUG] contig 2017-11-14 09:45:27,588 [DEBUG] who? ref0085797.13e5 ref0085797.13e3 2017-11-14 09:45:27,588 [DEBUG] Grabbing contig between nodes ref0085797.13e5 & ref0085797.13e3 - [trim 0, 0] 2017-11-14 09:45:27,588 [DEBUG] contig 8619 to 9711 2017-11-14 09:45:27,588 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,588 [DEBUG] Moving from ref0085797.13e5 to ref0085797.12e3 (p=1) 2017-11-14 09:45:27,588 [DEBUG] unimproved gap 2017-11-14 09:45:27,588 [DEBUG] Moving from ref0085797.12e3 to ref0085797.12e5 (p=1) 2017-11-14 09:45:27,588 [DEBUG] contig 2017-11-14 09:45:27,588 [DEBUG] who? ref0085797.12e5 ref0085797.12e3 2017-11-14 09:45:27,588 [DEBUG] Grabbing contig between nodes ref0085797.12e5 & ref0085797.12e3 - [trim 0, 0] 2017-11-14 09:45:27,588 [DEBUG] contig 8267 to 8403 2017-11-14 09:45:27,589 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,589 [DEBUG] Moving from ref0085797.12e5 to ref0085797.11e3 (p=1) 2017-11-14 09:45:27,589 [DEBUG] unimproved gap 2017-11-14 09:45:27,589 [DEBUG] Moving from ref0085797.11e3 to ref0085797.11e5 (p=1) 2017-11-14 09:45:27,589 [DEBUG] contig 2017-11-14 09:45:27,589 [DEBUG] who? ref0085797.11e5 ref0085797.11e3 2017-11-14 09:45:27,589 [DEBUG] Grabbing contig between nodes ref0085797.11e5 & ref0085797.11e3 - [trim 0, 0] 2017-11-14 09:45:27,589 [DEBUG] contig 7465 to 8144 2017-11-14 09:45:27,589 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,589 [DEBUG] Moving from ref0085797.11e5 to ref0085797.10e3 (p=1) 2017-11-14 09:45:27,589 [DEBUG] unimproved gap 2017-11-14 09:45:27,589 [DEBUG] Moving from ref0085797.10e3 to ref0085797.10e5 (p=1) 2017-11-14 09:45:27,589 [DEBUG] contig 2017-11-14 09:45:27,589 [DEBUG] who? ref0085797.10e5 ref0085797.10e3 2017-11-14 09:45:27,590 [DEBUG] Grabbing contig between nodes ref0085797.10e5 & ref0085797.10e3 - [trim 0, 0] 2017-11-14 09:45:27,590 [DEBUG] contig 7361 to 7395 2017-11-14 09:45:27,590 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,590 [DEBUG] Moving from ref0085797.10e5 to ref0085797.9e3 (p=1) 2017-11-14 09:45:27,590 [DEBUG] unimproved gap 2017-11-14 09:45:27,590 [DEBUG] Moving from ref0085797.9e3 to ref0085797.9e5 (p=1) 2017-11-14 09:45:27,590 [DEBUG] contig 2017-11-14 09:45:27,590 [DEBUG] who? ref0085797.9e5 ref0085797.9e3 2017-11-14 09:45:27,590 [DEBUG] Grabbing contig between nodes ref0085797.9e5 & ref0085797.9e3 - [trim 0, 0] 2017-11-14 09:45:27,590 [DEBUG] contig 6760 to 7147 2017-11-14 09:45:27,590 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,590 [DEBUG] Moving from ref0085797.9e5 to ref0085797.8e3 (p=1) 2017-11-14 09:45:27,590 [DEBUG] unimproved gap 2017-11-14 09:45:27,591 [DEBUG] Moving from ref0085797.8e3 to ref0085797.8e5 (p=1) 2017-11-14 09:45:27,591 [DEBUG] contig 2017-11-14 09:45:27,591 [DEBUG] who? ref0085797.8e5 ref0085797.8e3 2017-11-14 09:45:27,591 [DEBUG] Grabbing contig between nodes ref0085797.8e5 & ref0085797.8e3 - [trim 0, 0] 2017-11-14 09:45:27,591 [DEBUG] contig 6167 to 6438 2017-11-14 09:45:27,591 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,591 [DEBUG] Moving from ref0085797.8e5 to ref0085797.7e3 (p=1) 2017-11-14 09:45:27,591 [DEBUG] unimproved gap 2017-11-14 09:45:27,591 [DEBUG] Moving from ref0085797.7e3 to ref0085797.7e5 (p=1) 2017-11-14 09:45:27,591 [DEBUG] contig 2017-11-14 09:45:27,591 [DEBUG] who? ref0085797.7e5 ref0085797.7e3 2017-11-14 09:45:27,591 [DEBUG] Grabbing contig between nodes ref0085797.7e5 & ref0085797.7e3 - [trim 0, 0] 2017-11-14 09:45:27,591 [DEBUG] contig 6063 to 6114 2017-11-14 09:45:27,591 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,592 [DEBUG] Moving from ref0085797.7e5 to ref0085797.6e3 (p=1) 2017-11-14 09:45:27,592 [DEBUG] unimproved gap 2017-11-14 09:45:27,592 [DEBUG] Moving from ref0085797.6e3 to ref0085797.6e5 (p=1) 2017-11-14 09:45:27,592 [DEBUG] contig 2017-11-14 09:45:27,592 [DEBUG] who? ref0085797.6e5 ref0085797.6e3 2017-11-14 09:45:27,592 [DEBUG] Grabbing contig between nodes ref0085797.6e5 & ref0085797.6e3 - [trim 0, 0] 2017-11-14 09:45:27,592 [DEBUG] contig 5483 to 5904 2017-11-14 09:45:27,592 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,592 [DEBUG] Moving from ref0085797.6e5 to ref0085797.5e3 (p=1) 2017-11-14 09:45:27,592 [DEBUG] unimproved gap 2017-11-14 09:45:27,592 [DEBUG] Moving from ref0085797.5e3 to ref0085797.5e5 (p=1) 2017-11-14 09:45:27,592 [DEBUG] contig 2017-11-14 09:45:27,592 [DEBUG] who? ref0085797.5e5 ref0085797.5e3 2017-11-14 09:45:27,593 [DEBUG] Grabbing contig between nodes ref0085797.5e5 & ref0085797.5e3 - [trim 0, 0] 2017-11-14 09:45:27,593 [DEBUG] contig 5071 to 5309 2017-11-14 09:45:27,593 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,593 [DEBUG] Moving from ref0085797.5e5 to ref0085797.4e3 (p=1) 2017-11-14 09:45:27,593 [DEBUG] unimproved gap 2017-11-14 09:45:27,593 [DEBUG] Moving from ref0085797.4e3 to ref0085797.4e5 (p=1) 2017-11-14 09:45:27,593 [DEBUG] contig 2017-11-14 09:45:27,593 [DEBUG] who? ref0085797.4e5 ref0085797.4e3 2017-11-14 09:45:27,593 [DEBUG] Grabbing contig between nodes ref0085797.4e5 & ref0085797.4e3 - [trim 0, 0] 2017-11-14 09:45:27,593 [DEBUG] contig 3896 to 5044 2017-11-14 09:45:27,593 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,593 [DEBUG] Moving from ref0085797.4e5 to ref0085797.3e3 (p=1) 2017-11-14 09:45:27,593 [DEBUG] unimproved gap 2017-11-14 09:45:27,594 [DEBUG] Moving from ref0085797.3e3 to ref0085797.3e5 (p=1) 2017-11-14 09:45:27,594 [DEBUG] contig 2017-11-14 09:45:27,594 [DEBUG] who? ref0085797.3e5 ref0085797.3e3 2017-11-14 09:45:27,594 [DEBUG] Grabbing contig between nodes ref0085797.3e5 & ref0085797.3e3 - [trim 0, 0] 2017-11-14 09:45:27,594 [DEBUG] contig 2053 to 3591 2017-11-14 09:45:27,594 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,594 [DEBUG] Moving from ref0085797.3e5 to ref0085797.2e3 (p=1) 2017-11-14 09:45:27,594 [DEBUG] unimproved gap 2017-11-14 09:45:27,594 [DEBUG] Moving from ref0085797.2e3 to ref0085797.2e5 (p=1) 2017-11-14 09:45:27,594 [DEBUG] contig 2017-11-14 09:45:27,594 [DEBUG] who? ref0085797.2e5 ref0085797.2e3 2017-11-14 09:45:27,594 [DEBUG] Grabbing contig between nodes ref0085797.2e5 & ref0085797.2e3 - [trim 0, 0] 2017-11-14 09:45:27,594 [DEBUG] contig 922 to 1777 2017-11-14 09:45:27,594 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,595 [DEBUG] Moving from ref0085797.2e5 to ref0085797.1e3 (p=1) 2017-11-14 09:45:27,595 [DEBUG] unimproved gap 2017-11-14 09:45:27,595 [DEBUG] Moving from ref0085797.1e3 to ref0085797.1e5 (p=1) 2017-11-14 09:45:27,595 [DEBUG] contig 2017-11-14 09:45:27,595 [DEBUG] who? ref0085797.1e5 ref0085797.1e3 2017-11-14 09:45:27,595 [DEBUG] Grabbing contig between nodes ref0085797.1e5 & ref0085797.1e3 - [trim 0, 0] 2017-11-14 09:45:27,595 [DEBUG] contig 771 to 863 2017-11-14 09:45:27,595 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,595 [DEBUG] Moving from ref0085797.1e5 to ref0085797.0e3 (p=1) 2017-11-14 09:45:27,595 [DEBUG] unimproved gap 2017-11-14 09:45:27,595 [DEBUG] Moving from ref0085797.0e3 to ref0085797e5 (p=1) 2017-11-14 09:45:27,595 [DEBUG] contig 2017-11-14 09:45:27,595 [DEBUG] who? ref0085797e5 ref0085797.0e3 2017-11-14 09:45:27,596 [DEBUG] Grabbing contig between nodes ref0085797e5 & ref0085797.0e3 - [trim 0, 0] 2017-11-14 09:45:27,596 [DEBUG] contig 0 to 139 2017-11-14 09:45:27,596 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,596 [DEBUG] FirstFlipping 15 2017-11-14 09:45:27,596 [DEBUG] Contig 16 2017-11-14 09:45:27,599 [DEBUG] Moving from ref0661792e5 to ref0661792.0e3 (p=1) 2017-11-14 09:45:27,599 [DEBUG] contig 2017-11-14 09:45:27,599 [DEBUG] who? ref0661792e5 ref0661792.0e3 2017-11-14 09:45:27,599 [DEBUG] Grabbing contig between nodes ref0661792e5 & ref0661792.0e3 - [trim 0, 0] 2017-11-14 09:45:27,599 [DEBUG] contig 0 to 369 2017-11-14 09:45:27,599 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,599 [DEBUG] Moving from ref0661792.0e3 to ref0661792.1e5 (p=1) 2017-11-14 09:45:27,599 [DEBUG] unimproved gap 2017-11-14 09:45:27,599 [DEBUG] Moving from ref0661792.1e5 to ref0661792.1e3 (p=1) 2017-11-14 09:45:27,599 [DEBUG] contig 2017-11-14 09:45:27,599 [DEBUG] who? ref0661792.1e5 ref0661792.1e3 2017-11-14 09:45:27,599 [DEBUG] Grabbing contig between nodes ref0661792.1e5 & ref0661792.1e3 - [trim 0, 0] 2017-11-14 09:45:27,599 [DEBUG] contig 645 to 1259 2017-11-14 09:45:27,600 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,600 [DEBUG] Moving from ref0661792.1e3 to ref0661792.2e5 (p=1) 2017-11-14 09:45:27,600 [DEBUG] unimproved gap 2017-11-14 09:45:27,600 [DEBUG] Moving from ref0661792.2e5 to ref0661792.2e3 (p=1) 2017-11-14 09:45:27,600 [DEBUG] contig 2017-11-14 09:45:27,600 [DEBUG] who? ref0661792.2e5 ref0661792.2e3 2017-11-14 09:45:27,601 [DEBUG] Grabbing contig between nodes ref0661792.2e5 & ref0661792.2e3 - [trim 0, 0] 2017-11-14 09:45:27,601 [DEBUG] contig 1449 to 1634 2017-11-14 09:45:27,601 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,601 [DEBUG] Moving from ref0661792.2e3 to ref0661792.3e5 (p=1) 2017-11-14 09:45:27,601 [DEBUG] unimproved gap 2017-11-14 09:45:27,601 [DEBUG] Moving from ref0661792.3e5 to ref0661792.3e3 (p=1) 2017-11-14 09:45:27,601 [DEBUG] contig 2017-11-14 09:45:27,601 [DEBUG] who? ref0661792.3e5 ref0661792.3e3 2017-11-14 09:45:27,601 [DEBUG] Grabbing contig between nodes ref0661792.3e5 & ref0661792.3e3 - [trim 0, 0] 2017-11-14 09:45:27,601 [DEBUG] contig 1878 to 3052 2017-11-14 09:45:27,601 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,601 [DEBUG] Moving from ref0661792.3e3 to ref0661792.4e5 (p=1) 2017-11-14 09:45:27,601 [DEBUG] unimproved gap 2017-11-14 09:45:27,602 [DEBUG] Moving from ref0661792.4e5 to ref0661792.4e3 (p=1) 2017-11-14 09:45:27,602 [DEBUG] contig 2017-11-14 09:45:27,602 [DEBUG] who? ref0661792.4e5 ref0661792.4e3 2017-11-14 09:45:27,602 [DEBUG] Grabbing contig between nodes ref0661792.4e5 & ref0661792.4e3 - [trim 0, 0] 2017-11-14 09:45:27,602 [DEBUG] contig 3126 to 3203 2017-11-14 09:45:27,602 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,602 [DEBUG] Moving from ref0661792.4e3 to ref0661792.5e5 (p=1) 2017-11-14 09:45:27,602 [DEBUG] unimproved gap 2017-11-14 09:45:27,602 [DEBUG] Moving from ref0661792.5e5 to ref0661792.5e3 (p=1) 2017-11-14 09:45:27,602 [DEBUG] contig 2017-11-14 09:45:27,602 [DEBUG] who? ref0661792.5e5 ref0661792.5e3 2017-11-14 09:45:27,602 [DEBUG] Grabbing contig between nodes ref0661792.5e5 & ref0661792.5e3 - [trim 0, 0] 2017-11-14 09:45:27,602 [DEBUG] contig 3356 to 3393 2017-11-14 09:45:27,603 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,603 [DEBUG] Moving from ref0661792.5e3 to ref0661792.6e5 (p=1) 2017-11-14 09:45:27,603 [DEBUG] unimproved gap 2017-11-14 09:45:27,603 [DEBUG] Moving from ref0661792.6e5 to ref0661792.6e3 (p=1) 2017-11-14 09:45:27,603 [DEBUG] contig 2017-11-14 09:45:27,603 [DEBUG] who? ref0661792.6e5 ref0661792.6e3 2017-11-14 09:45:27,603 [DEBUG] Grabbing contig between nodes ref0661792.6e5 & ref0661792.6e3 - [trim 0, 0] 2017-11-14 09:45:27,603 [DEBUG] contig 3481 to 4104 2017-11-14 09:45:27,603 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,603 [DEBUG] Moving from ref0661792.6e3 to ref0661792.7e5 (p=1) 2017-11-14 09:45:27,603 [DEBUG] unimproved gap 2017-11-14 09:45:27,603 [DEBUG] Moving from ref0661792.7e5 to ref0661792.7e3 (p=1) 2017-11-14 09:45:27,603 [DEBUG] contig 2017-11-14 09:45:27,604 [DEBUG] who? ref0661792.7e5 ref0661792.7e3 2017-11-14 09:45:27,604 [DEBUG] Grabbing contig between nodes ref0661792.7e5 & ref0661792.7e3 - [trim 0, 0] 2017-11-14 09:45:27,604 [DEBUG] contig 4660 to 4707 2017-11-14 09:45:27,604 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,604 [DEBUG] Moving from ref0661792.7e3 to ref0661792.8e5 (p=1) 2017-11-14 09:45:27,604 [DEBUG] unimproved gap 2017-11-14 09:45:27,604 [DEBUG] Moving from ref0661792.8e5 to ref0661792.8e3 (p=1) 2017-11-14 09:45:27,604 [DEBUG] contig 2017-11-14 09:45:27,604 [DEBUG] who? ref0661792.8e5 ref0661792.8e3 2017-11-14 09:45:27,604 [DEBUG] Grabbing contig between nodes ref0661792.8e5 & ref0661792.8e3 - [trim 0, 0] 2017-11-14 09:45:27,604 [DEBUG] contig 4989 to 6342 2017-11-14 09:45:27,604 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,604 [DEBUG] Moving from ref0661792.8e3 to ref0661792.9e5 (p=1) 2017-11-14 09:45:27,605 [DEBUG] unimproved gap 2017-11-14 09:45:27,605 [DEBUG] Moving from ref0661792.9e5 to ref0661792.9e3 (p=1) 2017-11-14 09:45:27,605 [DEBUG] contig 2017-11-14 09:45:27,605 [DEBUG] who? ref0661792.9e5 ref0661792.9e3 2017-11-14 09:45:27,605 [DEBUG] Grabbing contig between nodes ref0661792.9e5 & ref0661792.9e3 - [trim 0, 0] 2017-11-14 09:45:27,605 [DEBUG] contig 6852 to 8667 2017-11-14 09:45:27,605 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,605 [DEBUG] Moving from ref0661792.9e3 to ref0661792.10e5 (p=1) 2017-11-14 09:45:27,605 [DEBUG] unimproved gap 2017-11-14 09:45:27,605 [DEBUG] Moving from ref0661792.10e5 to ref0661792.10e3 (p=1) 2017-11-14 09:45:27,605 [DEBUG] contig 2017-11-14 09:45:27,605 [DEBUG] who? ref0661792.10e5 ref0661792.10e3 2017-11-14 09:45:27,605 [DEBUG] Grabbing contig between nodes ref0661792.10e5 & ref0661792.10e3 - [trim 0, 0] 2017-11-14 09:45:27,606 [DEBUG] contig 8866 to 9492 2017-11-14 09:45:27,606 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,606 [DEBUG] Moving from ref0661792.10e3 to ref0661792.11e5 (p=1) 2017-11-14 09:45:27,606 [DEBUG] unimproved gap 2017-11-14 09:45:27,606 [DEBUG] Moving from ref0661792.11e5 to ref0661792.11e3 (p=1) 2017-11-14 09:45:27,606 [DEBUG] contig 2017-11-14 09:45:27,606 [DEBUG] who? ref0661792.11e5 ref0661792.11e3 2017-11-14 09:45:27,606 [DEBUG] Grabbing contig between nodes ref0661792.11e5 & ref0661792.11e3 - [trim 0, 0] 2017-11-14 09:45:27,606 [DEBUG] contig 9555 to 10616 2017-11-14 09:45:27,606 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,606 [DEBUG] Moving from ref0661792.11e3 to ref0661792.12e5 (p=1) 2017-11-14 09:45:27,606 [DEBUG] unimproved gap 2017-11-14 09:45:27,606 [DEBUG] Moving from ref0661792.12e5 to ref0661792.12e3 (p=1) 2017-11-14 09:45:27,606 [DEBUG] contig 2017-11-14 09:45:27,607 [DEBUG] who? ref0661792.12e5 ref0661792.12e3 2017-11-14 09:45:27,607 [DEBUG] Grabbing contig between nodes ref0661792.12e5 & ref0661792.12e3 - [trim 0, 0] 2017-11-14 09:45:27,607 [DEBUG] contig 11074 to 18855 2017-11-14 09:45:27,607 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,607 [DEBUG] Moving from ref0661792.12e3 to ref0661792.13e5 (p=1) 2017-11-14 09:45:27,607 [DEBUG] unimproved gap 2017-11-14 09:45:27,607 [DEBUG] Moving from ref0661792.13e5 to ref0661792.13e3 (p=1) 2017-11-14 09:45:27,607 [DEBUG] contig 2017-11-14 09:45:27,607 [DEBUG] who? ref0661792.13e5 ref0661792.13e3 2017-11-14 09:45:27,607 [DEBUG] Grabbing contig between nodes ref0661792.13e5 & ref0661792.13e3 - [trim 0, 0] 2017-11-14 09:45:27,607 [DEBUG] contig 19422 to 20409 2017-11-14 09:45:27,607 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,607 [DEBUG] Moving from ref0661792.13e3 to ref0661792.14e5 (p=1) 2017-11-14 09:45:27,608 [DEBUG] unimproved gap 2017-11-14 09:45:27,608 [DEBUG] Moving from ref0661792.14e5 to ref0661792.14e3 (p=1) 2017-11-14 09:45:27,608 [DEBUG] contig 2017-11-14 09:45:27,608 [DEBUG] who? ref0661792.14e5 ref0661792.14e3 2017-11-14 09:45:27,608 [DEBUG] Grabbing contig between nodes ref0661792.14e5 & ref0661792.14e3 - [trim 0, 0] 2017-11-14 09:45:27,608 [DEBUG] contig 20596 to 21165 2017-11-14 09:45:27,608 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,608 [DEBUG] Moving from ref0661792.14e3 to ref0661792.15e5 (p=1) 2017-11-14 09:45:27,608 [DEBUG] unimproved gap 2017-11-14 09:45:27,608 [DEBUG] Moving from ref0661792.15e5 to ref0661792.15e3 (p=1) 2017-11-14 09:45:27,608 [DEBUG] contig 2017-11-14 09:45:27,608 [DEBUG] who? ref0661792.15e5 ref0661792.15e3 2017-11-14 09:45:27,609 [DEBUG] Grabbing contig between nodes ref0661792.15e5 & ref0661792.15e3 - [trim 0, 0] 2017-11-14 09:45:27,609 [DEBUG] contig 21217 to 22550 2017-11-14 09:45:27,609 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,609 [DEBUG] Moving from ref0661792.15e3 to ref0661792.16e5 (p=1) 2017-11-14 09:45:27,609 [DEBUG] unimproved gap 2017-11-14 09:45:27,609 [DEBUG] Moving from ref0661792.16e5 to ref0661792.16e3 (p=1) 2017-11-14 09:45:27,609 [DEBUG] contig 2017-11-14 09:45:27,609 [DEBUG] who? ref0661792.16e5 ref0661792.16e3 2017-11-14 09:45:27,609 [DEBUG] Grabbing contig between nodes ref0661792.16e5 & ref0661792.16e3 - [trim 0, 0] 2017-11-14 09:45:27,609 [DEBUG] contig 22668 to 24006 2017-11-14 09:45:27,609 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,609 [DEBUG] Moving from ref0661792.16e3 to ref0661792.17e5 (p=1) 2017-11-14 09:45:27,609 [DEBUG] unimproved gap 2017-11-14 09:45:27,610 [DEBUG] Moving from ref0661792.17e5 to ref0661792.17e3 (p=1) 2017-11-14 09:45:27,610 [DEBUG] contig 2017-11-14 09:45:27,610 [DEBUG] who? ref0661792.17e5 ref0661792.17e3 2017-11-14 09:45:27,610 [DEBUG] Grabbing contig between nodes ref0661792.17e5 & ref0661792.17e3 - [trim 0, 0] 2017-11-14 09:45:27,610 [DEBUG] contig 24147 to 24618 2017-11-14 09:45:27,610 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,610 [DEBUG] Moving from ref0661792.17e3 to ref0661792.18e5 (p=1) 2017-11-14 09:45:27,610 [DEBUG] unimproved gap 2017-11-14 09:45:27,610 [DEBUG] Moving from ref0661792.18e5 to ref0661792.18e3 (p=1) 2017-11-14 09:45:27,610 [DEBUG] contig 2017-11-14 09:45:27,610 [DEBUG] who? ref0661792.18e5 ref0661792.18e3 2017-11-14 09:45:27,610 [DEBUG] Grabbing contig between nodes ref0661792.18e5 & ref0661792.18e3 - [trim 0, 0] 2017-11-14 09:45:27,610 [DEBUG] contig 24885 to 25186 2017-11-14 09:45:27,610 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,611 [DEBUG] Moving from ref0661792.18e3 to ref0661792.19e5 (p=1) 2017-11-14 09:45:27,611 [DEBUG] unimproved gap 2017-11-14 09:45:27,611 [DEBUG] Moving from ref0661792.19e5 to ref0661792.19e3 (p=1) 2017-11-14 09:45:27,611 [DEBUG] contig 2017-11-14 09:45:27,611 [DEBUG] who? ref0661792.19e5 ref0661792.19e3 2017-11-14 09:45:27,611 [DEBUG] Grabbing contig between nodes ref0661792.19e5 & ref0661792.19e3 - [trim 0, 0] 2017-11-14 09:45:27,611 [DEBUG] contig 25420 to 28179 2017-11-14 09:45:27,611 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,611 [DEBUG] Moving from ref0661792.19e3 to ref0661792.20e5 (p=1) 2017-11-14 09:45:27,611 [DEBUG] unimproved gap 2017-11-14 09:45:27,611 [DEBUG] Moving from ref0661792.20e5 to ref0661792e3 (p=1) 2017-11-14 09:45:27,611 [DEBUG] contig 2017-11-14 09:45:27,611 [DEBUG] who? ref0661792.20e5 ref0661792e3 2017-11-14 09:45:27,612 [DEBUG] Grabbing contig between nodes ref0661792.20e5 & ref0661792e3 - [trim 0, 0] 2017-11-14 09:45:27,612 [DEBUG] contig 28531 to 30621 2017-11-14 09:45:27,612 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,612 [DEBUG] Contig 17 2017-11-14 09:45:27,614 [DEBUG] Moving from ref0073742e5 to ref0073742.0e3 (p=1) 2017-11-14 09:45:27,614 [DEBUG] contig 2017-11-14 09:45:27,615 [DEBUG] who? ref0073742e5 ref0073742.0e3 2017-11-14 09:45:27,615 [DEBUG] Grabbing contig between nodes ref0073742e5 & ref0073742.0e3 - [trim 0, 0] 2017-11-14 09:45:27,615 [DEBUG] contig 0 to 71 2017-11-14 09:45:27,615 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,615 [DEBUG] Moving from ref0073742.0e3 to ref0073742.1e5 (p=1) 2017-11-14 09:45:27,615 [DEBUG] unimproved gap 2017-11-14 09:45:27,615 [DEBUG] Moving from ref0073742.1e5 to ref0073742.1e3 (p=1) 2017-11-14 09:45:27,615 [DEBUG] contig 2017-11-14 09:45:27,615 [DEBUG] who? ref0073742.1e5 ref0073742.1e3 2017-11-14 09:45:27,615 [DEBUG] Grabbing contig between nodes ref0073742.1e5 & ref0073742.1e3 - [trim 0, 0] 2017-11-14 09:45:27,615 [DEBUG] contig 504 to 2029 2017-11-14 09:45:27,615 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,616 [DEBUG] Moving from ref0073742.1e3 to ref0073742.2e5 (p=1) 2017-11-14 09:45:27,616 [DEBUG] unimproved gap 2017-11-14 09:45:27,616 [DEBUG] Moving from ref0073742.2e5 to ref0073742.2e3 (p=1) 2017-11-14 09:45:27,616 [DEBUG] contig 2017-11-14 09:45:27,616 [DEBUG] who? ref0073742.2e5 ref0073742.2e3 2017-11-14 09:45:27,616 [DEBUG] Grabbing contig between nodes ref0073742.2e5 & ref0073742.2e3 - [trim 0, 0] 2017-11-14 09:45:27,616 [DEBUG] contig 2413 to 5401 2017-11-14 09:45:27,616 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,616 [DEBUG] Moving from ref0073742.2e3 to ref0073742.3e5 (p=1) 2017-11-14 09:45:27,616 [DEBUG] unimproved gap 2017-11-14 09:45:27,616 [DEBUG] Moving from ref0073742.3e5 to ref0073742.3e3 (p=1) 2017-11-14 09:45:27,616 [DEBUG] contig 2017-11-14 09:45:27,616 [DEBUG] who? ref0073742.3e5 ref0073742.3e3 2017-11-14 09:45:27,617 [DEBUG] Grabbing contig between nodes ref0073742.3e5 & ref0073742.3e3 - [trim 0, 0] 2017-11-14 09:45:27,617 [DEBUG] contig 5649 to 5700 2017-11-14 09:45:27,617 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,617 [DEBUG] Moving from ref0073742.3e3 to ref0073742.4e5 (p=1) 2017-11-14 09:45:27,617 [DEBUG] unimproved gap 2017-11-14 09:45:27,617 [DEBUG] Moving from ref0073742.4e5 to ref0073742.4e3 (p=1) 2017-11-14 09:45:27,617 [DEBUG] contig 2017-11-14 09:45:27,617 [DEBUG] who? ref0073742.4e5 ref0073742.4e3 2017-11-14 09:45:27,617 [DEBUG] Grabbing contig between nodes ref0073742.4e5 & ref0073742.4e3 - [trim 0, 0] 2017-11-14 09:45:27,617 [DEBUG] contig 6196 to 8996 2017-11-14 09:45:27,617 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,617 [DEBUG] Moving from ref0073742.4e3 to ref0073742.5e5 (p=1) 2017-11-14 09:45:27,617 [DEBUG] unimproved gap 2017-11-14 09:45:27,618 [DEBUG] Moving from ref0073742.5e5 to ref0073742.5e3 (p=1) 2017-11-14 09:45:27,618 [DEBUG] contig 2017-11-14 09:45:27,618 [DEBUG] who? ref0073742.5e5 ref0073742.5e3 2017-11-14 09:45:27,618 [DEBUG] Grabbing contig between nodes ref0073742.5e5 & ref0073742.5e3 - [trim 0, 0] 2017-11-14 09:45:27,618 [DEBUG] contig 9251 to 9585 2017-11-14 09:45:27,618 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,618 [DEBUG] Moving from ref0073742.5e3 to ref0073742.6e5 (p=1) 2017-11-14 09:45:27,618 [DEBUG] unimproved gap 2017-11-14 09:45:27,618 [DEBUG] Moving from ref0073742.6e5 to ref0073742.6e3 (p=1) 2017-11-14 09:45:27,618 [DEBUG] contig 2017-11-14 09:45:27,618 [DEBUG] who? ref0073742.6e5 ref0073742.6e3 2017-11-14 09:45:27,618 [DEBUG] Grabbing contig between nodes ref0073742.6e5 & ref0073742.6e3 - [trim 0, 0] 2017-11-14 09:45:27,618 [DEBUG] contig 9822 to 10013 2017-11-14 09:45:27,618 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,619 [DEBUG] Moving from ref0073742.6e3 to ref0073742.7e5 (p=1) 2017-11-14 09:45:27,619 [DEBUG] unimproved gap 2017-11-14 09:45:27,619 [DEBUG] Moving from ref0073742.7e5 to ref0073742.7e3 (p=1) 2017-11-14 09:45:27,619 [DEBUG] contig 2017-11-14 09:45:27,619 [DEBUG] who? ref0073742.7e5 ref0073742.7e3 2017-11-14 09:45:27,619 [DEBUG] Grabbing contig between nodes ref0073742.7e5 & ref0073742.7e3 - [trim 0, 0] 2017-11-14 09:45:27,619 [DEBUG] contig 10222 to 12654 2017-11-14 09:45:27,619 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,619 [DEBUG] Moving from ref0073742.7e3 to ref0073742.8e5 (p=1) 2017-11-14 09:45:27,619 [DEBUG] unimproved gap 2017-11-14 09:45:27,619 [DEBUG] Moving from ref0073742.8e5 to ref0073742.8e3 (p=1) 2017-11-14 09:45:27,619 [DEBUG] contig 2017-11-14 09:45:27,619 [DEBUG] who? ref0073742.8e5 ref0073742.8e3 2017-11-14 09:45:27,620 [DEBUG] Grabbing contig between nodes ref0073742.8e5 & ref0073742.8e3 - [trim 0, 0] 2017-11-14 09:45:27,620 [DEBUG] contig 12967 to 13211 2017-11-14 09:45:27,620 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,620 [DEBUG] Moving from ref0073742.8e3 to ref0073742.9e5 (p=1) 2017-11-14 09:45:27,620 [DEBUG] unimproved gap 2017-11-14 09:45:27,620 [DEBUG] Moving from ref0073742.9e5 to ref0073742.9e3 (p=1) 2017-11-14 09:45:27,620 [DEBUG] contig 2017-11-14 09:45:27,620 [DEBUG] who? ref0073742.9e5 ref0073742.9e3 2017-11-14 09:45:27,620 [DEBUG] Grabbing contig between nodes ref0073742.9e5 & ref0073742.9e3 - [trim 0, 0] 2017-11-14 09:45:27,620 [DEBUG] contig 13514 to 14774 2017-11-14 09:45:27,620 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,620 [DEBUG] Moving from ref0073742.9e3 to ref0073742.10e5 (p=1) 2017-11-14 09:45:27,620 [DEBUG] unimproved gap 2017-11-14 09:45:27,621 [DEBUG] Moving from ref0073742.10e5 to ref0073742.10e3 (p=1) 2017-11-14 09:45:27,621 [DEBUG] contig 2017-11-14 09:45:27,621 [DEBUG] who? ref0073742.10e5 ref0073742.10e3 2017-11-14 09:45:27,621 [DEBUG] Grabbing contig between nodes ref0073742.10e5 & ref0073742.10e3 - [trim 0, 0] 2017-11-14 09:45:27,621 [DEBUG] contig 14922 to 18352 2017-11-14 09:45:27,621 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,621 [DEBUG] Moving from ref0073742.10e3 to ref0073742.11e5 (p=1) 2017-11-14 09:45:27,621 [DEBUG] unimproved gap 2017-11-14 09:45:27,621 [DEBUG] Moving from ref0073742.11e5 to ref0073742.11e3 (p=1) 2017-11-14 09:45:27,621 [DEBUG] contig 2017-11-14 09:45:27,621 [DEBUG] who? ref0073742.11e5 ref0073742.11e3 2017-11-14 09:45:27,621 [DEBUG] Grabbing contig between nodes ref0073742.11e5 & ref0073742.11e3 - [trim 0, 0] 2017-11-14 09:45:27,621 [DEBUG] contig 18565 to 19330 2017-11-14 09:45:27,622 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,622 [DEBUG] Moving from ref0073742.11e3 to ref0073742.12e5 (p=1) 2017-11-14 09:45:27,622 [DEBUG] unimproved gap 2017-11-14 09:45:27,622 [DEBUG] Moving from ref0073742.12e5 to ref0073742.12e3 (p=1) 2017-11-14 09:45:27,622 [DEBUG] contig 2017-11-14 09:45:27,622 [DEBUG] who? ref0073742.12e5 ref0073742.12e3 2017-11-14 09:45:27,622 [DEBUG] Grabbing contig between nodes ref0073742.12e5 & ref0073742.12e3 - [trim 0, 0] 2017-11-14 09:45:27,622 [DEBUG] contig 19432 to 20212 2017-11-14 09:45:27,622 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,622 [DEBUG] Moving from ref0073742.12e3 to ref0073742.13e5 (p=1) 2017-11-14 09:45:27,622 [DEBUG] unimproved gap 2017-11-14 09:45:27,622 [DEBUG] Moving from ref0073742.13e5 to ref0073742.13e3 (p=1) 2017-11-14 09:45:27,622 [DEBUG] contig 2017-11-14 09:45:27,623 [DEBUG] who? ref0073742.13e5 ref0073742.13e3 2017-11-14 09:45:27,623 [DEBUG] Grabbing contig between nodes ref0073742.13e5 & ref0073742.13e3 - [trim 0, 0] 2017-11-14 09:45:27,623 [DEBUG] contig 20477 to 21126 2017-11-14 09:45:27,623 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,623 [DEBUG] Moving from ref0073742.13e3 to ref0073742.14e5 (p=1) 2017-11-14 09:45:27,623 [DEBUG] unimproved gap 2017-11-14 09:45:27,623 [DEBUG] Moving from ref0073742.14e5 to ref0073742.14e3 (p=1) 2017-11-14 09:45:27,623 [DEBUG] contig 2017-11-14 09:45:27,623 [DEBUG] who? ref0073742.14e5 ref0073742.14e3 2017-11-14 09:45:27,623 [DEBUG] Grabbing contig between nodes ref0073742.14e5 & ref0073742.14e3 - [trim 0, 0] 2017-11-14 09:45:27,623 [DEBUG] contig 21423 to 24398 2017-11-14 09:45:27,623 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,623 [DEBUG] Moving from ref0073742.14e3 to ref0073742.15e5 (p=1) 2017-11-14 09:45:27,624 [DEBUG] unimproved gap 2017-11-14 09:45:27,624 [DEBUG] Moving from ref0073742.15e5 to ref0073742.15e3 (p=1) 2017-11-14 09:45:27,624 [DEBUG] contig 2017-11-14 09:45:27,624 [DEBUG] who? ref0073742.15e5 ref0073742.15e3 2017-11-14 09:45:27,624 [DEBUG] Grabbing contig between nodes ref0073742.15e5 & ref0073742.15e3 - [trim 0, 0] 2017-11-14 09:45:27,624 [DEBUG] contig 24461 to 24716 2017-11-14 09:45:27,624 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,624 [DEBUG] Moving from ref0073742.15e3 to ref0073742.16e5 (p=1) 2017-11-14 09:45:27,624 [DEBUG] unimproved gap 2017-11-14 09:45:27,624 [DEBUG] Moving from ref0073742.16e5 to ref0073742.16e3 (p=1) 2017-11-14 09:45:27,624 [DEBUG] contig 2017-11-14 09:45:27,624 [DEBUG] who? ref0073742.16e5 ref0073742.16e3 2017-11-14 09:45:27,624 [DEBUG] Grabbing contig between nodes ref0073742.16e5 & ref0073742.16e3 - [trim 0, 0] 2017-11-14 09:45:27,625 [DEBUG] contig 24846 to 25334 2017-11-14 09:45:27,625 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,625 [DEBUG] Moving from ref0073742.16e3 to ref0073742.17e5 (p=1) 2017-11-14 09:45:27,625 [DEBUG] unimproved gap 2017-11-14 09:45:27,625 [DEBUG] Moving from ref0073742.17e5 to ref0073742.17e3 (p=1) 2017-11-14 09:45:27,625 [DEBUG] contig 2017-11-14 09:45:27,625 [DEBUG] who? ref0073742.17e5 ref0073742.17e3 2017-11-14 09:45:27,625 [DEBUG] Grabbing contig between nodes ref0073742.17e5 & ref0073742.17e3 - [trim 0, 0] 2017-11-14 09:45:27,625 [DEBUG] contig 25703 to 25773 2017-11-14 09:45:27,625 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,625 [DEBUG] Moving from ref0073742.17e3 to ref0073742.18e5 (p=1) 2017-11-14 09:45:27,625 [DEBUG] unimproved gap 2017-11-14 09:45:27,625 [DEBUG] Moving from ref0073742.18e5 to ref0073742.18e3 (p=1) 2017-11-14 09:45:27,626 [DEBUG] contig 2017-11-14 09:45:27,626 [DEBUG] who? ref0073742.18e5 ref0073742.18e3 2017-11-14 09:45:27,626 [DEBUG] Grabbing contig between nodes ref0073742.18e5 & ref0073742.18e3 - [trim 0, 0] 2017-11-14 09:45:27,626 [DEBUG] contig 26071 to 26109 2017-11-14 09:45:27,626 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,626 [DEBUG] Moving from ref0073742.18e3 to ref0073742.19e5 (p=1) 2017-11-14 09:45:27,626 [DEBUG] unimproved gap 2017-11-14 09:45:27,626 [DEBUG] Moving from ref0073742.19e5 to ref0073742.19e3 (p=1) 2017-11-14 09:45:27,626 [DEBUG] contig 2017-11-14 09:45:27,626 [DEBUG] who? ref0073742.19e5 ref0073742.19e3 2017-11-14 09:45:27,626 [DEBUG] Grabbing contig between nodes ref0073742.19e5 & ref0073742.19e3 - [trim 0, 0] 2017-11-14 09:45:27,626 [DEBUG] contig 26260 to 26329 2017-11-14 09:45:27,626 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,626 [DEBUG] Moving from ref0073742.19e3 to ref0073742.20e5 (p=1) 2017-11-14 09:45:27,627 [DEBUG] unimproved gap 2017-11-14 09:45:27,627 [DEBUG] Moving from ref0073742.20e5 to ref0073742e3 (p=1) 2017-11-14 09:45:27,627 [DEBUG] contig 2017-11-14 09:45:27,627 [DEBUG] who? ref0073742.20e5 ref0073742e3 2017-11-14 09:45:27,627 [DEBUG] Grabbing contig between nodes ref0073742.20e5 & ref0073742e3 - [trim 0, 0] 2017-11-14 09:45:27,627 [DEBUG] contig 26435 to 27005 2017-11-14 09:45:27,627 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,627 [DEBUG] Contig 18 2017-11-14 09:45:27,630 [DEBUG] Moving from ref0197794e5 to ref0197794.0e3 (p=1) 2017-11-14 09:45:27,630 [DEBUG] contig 2017-11-14 09:45:27,630 [DEBUG] who? ref0197794e5 ref0197794.0e3 2017-11-14 09:45:27,630 [DEBUG] Grabbing contig between nodes ref0197794e5 & ref0197794.0e3 - [trim 0, 0] 2017-11-14 09:45:27,630 [DEBUG] contig 0 to 1053 2017-11-14 09:45:27,630 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,630 [DEBUG] Moving from ref0197794.0e3 to ref0197794.1e5 (p=1) 2017-11-14 09:45:27,630 [DEBUG] unimproved gap 2017-11-14 09:45:27,630 [DEBUG] Moving from ref0197794.1e5 to ref0197794.1e3 (p=1) 2017-11-14 09:45:27,630 [DEBUG] contig 2017-11-14 09:45:27,630 [DEBUG] who? ref0197794.1e5 ref0197794.1e3 2017-11-14 09:45:27,631 [DEBUG] Grabbing contig between nodes ref0197794.1e5 & ref0197794.1e3 - [trim 0, 0] 2017-11-14 09:45:27,631 [DEBUG] contig 1517 to 1598 2017-11-14 09:45:27,631 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,631 [DEBUG] Moving from ref0197794.1e3 to ref0197794.2e5 (p=1) 2017-11-14 09:45:27,631 [DEBUG] unimproved gap 2017-11-14 09:45:27,631 [DEBUG] Moving from ref0197794.2e5 to ref0197794.2e3 (p=1) 2017-11-14 09:45:27,631 [DEBUG] contig 2017-11-14 09:45:27,631 [DEBUG] who? ref0197794.2e5 ref0197794.2e3 2017-11-14 09:45:27,631 [DEBUG] Grabbing contig between nodes ref0197794.2e5 & ref0197794.2e3 - [trim 0, 0] 2017-11-14 09:45:27,631 [DEBUG] contig 1863 to 2616 2017-11-14 09:45:27,631 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,631 [DEBUG] Moving from ref0197794.2e3 to ref0197794.3e5 (p=1) 2017-11-14 09:45:27,632 [DEBUG] unimproved gap 2017-11-14 09:45:27,632 [DEBUG] Moving from ref0197794.3e5 to ref0197794.3e3 (p=1) 2017-11-14 09:45:27,632 [DEBUG] contig 2017-11-14 09:45:27,632 [DEBUG] who? ref0197794.3e5 ref0197794.3e3 2017-11-14 09:45:27,632 [DEBUG] Grabbing contig between nodes ref0197794.3e5 & ref0197794.3e3 - [trim 0, 0] 2017-11-14 09:45:27,632 [DEBUG] contig 2787 to 4023 2017-11-14 09:45:27,632 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,632 [DEBUG] Moving from ref0197794.3e3 to ref0197794.4e5 (p=1) 2017-11-14 09:45:27,632 [DEBUG] unimproved gap 2017-11-14 09:45:27,632 [DEBUG] Moving from ref0197794.4e5 to ref0197794.4e3 (p=1) 2017-11-14 09:45:27,632 [DEBUG] contig 2017-11-14 09:45:27,632 [DEBUG] who? ref0197794.4e5 ref0197794.4e3 2017-11-14 09:45:27,632 [DEBUG] Grabbing contig between nodes ref0197794.4e5 & ref0197794.4e3 - [trim 0, 0] 2017-11-14 09:45:27,633 [DEBUG] contig 4112 to 5145 2017-11-14 09:45:27,633 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,633 [DEBUG] Moving from ref0197794.4e3 to ref0197794.5e5 (p=1) 2017-11-14 09:45:27,633 [DEBUG] unimproved gap 2017-11-14 09:45:27,633 [DEBUG] Moving from ref0197794.5e5 to ref0197794.5e3 (p=1) 2017-11-14 09:45:27,633 [DEBUG] contig 2017-11-14 09:45:27,633 [DEBUG] who? ref0197794.5e5 ref0197794.5e3 2017-11-14 09:45:27,633 [DEBUG] Grabbing contig between nodes ref0197794.5e5 & ref0197794.5e3 - [trim 0, 0] 2017-11-14 09:45:27,633 [DEBUG] contig 5620 to 5653 2017-11-14 09:45:27,633 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,633 [DEBUG] Moving from ref0197794.5e3 to ref0197794.6e5 (p=1) 2017-11-14 09:45:27,633 [DEBUG] unimproved gap 2017-11-14 09:45:27,633 [DEBUG] Moving from ref0197794.6e5 to ref0197794.6e3 (p=1) 2017-11-14 09:45:27,633 [DEBUG] contig 2017-11-14 09:45:27,634 [DEBUG] who? ref0197794.6e5 ref0197794.6e3 2017-11-14 09:45:27,634 [DEBUG] Grabbing contig between nodes ref0197794.6e5 & ref0197794.6e3 - [trim 0, 0] 2017-11-14 09:45:27,634 [DEBUG] contig 5923 to 5976 2017-11-14 09:45:27,634 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,634 [DEBUG] Moving from ref0197794.6e3 to ref0197794.7e5 (p=1) 2017-11-14 09:45:27,634 [DEBUG] unimproved gap 2017-11-14 09:45:27,634 [DEBUG] Moving from ref0197794.7e5 to ref0197794.7e3 (p=1) 2017-11-14 09:45:27,634 [DEBUG] contig 2017-11-14 09:45:27,634 [DEBUG] who? ref0197794.7e5 ref0197794.7e3 2017-11-14 09:45:27,634 [DEBUG] Grabbing contig between nodes ref0197794.7e5 & ref0197794.7e3 - [trim 0, 0] 2017-11-14 09:45:27,634 [DEBUG] contig 6007 to 6063 2017-11-14 09:45:27,634 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,634 [DEBUG] Moving from ref0197794.7e3 to ref0197794.8e5 (p=1) 2017-11-14 09:45:27,634 [DEBUG] unimproved gap 2017-11-14 09:45:27,635 [DEBUG] Moving from ref0197794.8e5 to ref0197794.8e3 (p=1) 2017-11-14 09:45:27,635 [DEBUG] contig 2017-11-14 09:45:27,635 [DEBUG] who? ref0197794.8e5 ref0197794.8e3 2017-11-14 09:45:27,635 [DEBUG] Grabbing contig between nodes ref0197794.8e5 & ref0197794.8e3 - [trim 0, 0] 2017-11-14 09:45:27,635 [DEBUG] contig 6287 to 6443 2017-11-14 09:45:27,635 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,635 [DEBUG] Moving from ref0197794.8e3 to ref0197794.9e5 (p=1) 2017-11-14 09:45:27,635 [DEBUG] unimproved gap 2017-11-14 09:45:27,635 [DEBUG] Moving from ref0197794.9e5 to ref0197794.9e3 (p=1) 2017-11-14 09:45:27,635 [DEBUG] contig 2017-11-14 09:45:27,635 [DEBUG] who? ref0197794.9e5 ref0197794.9e3 2017-11-14 09:45:27,635 [DEBUG] Grabbing contig between nodes ref0197794.9e5 & ref0197794.9e3 - [trim 0, 0] 2017-11-14 09:45:27,635 [DEBUG] contig 6570 to 7659 2017-11-14 09:45:27,636 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,636 [DEBUG] Moving from ref0197794.9e3 to ref0197794.10e5 (p=1) 2017-11-14 09:45:27,636 [DEBUG] unimproved gap 2017-11-14 09:45:27,636 [DEBUG] Moving from ref0197794.10e5 to ref0197794.10e3 (p=1) 2017-11-14 09:45:27,636 [DEBUG] contig 2017-11-14 09:45:27,636 [DEBUG] who? ref0197794.10e5 ref0197794.10e3 2017-11-14 09:45:27,636 [DEBUG] Grabbing contig between nodes ref0197794.10e5 & ref0197794.10e3 - [trim 0, 0] 2017-11-14 09:45:27,636 [DEBUG] contig 7805 to 9149 2017-11-14 09:45:27,636 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,636 [DEBUG] Moving from ref0197794.10e3 to ref0197794.11e5 (p=1) 2017-11-14 09:45:27,636 [DEBUG] unimproved gap 2017-11-14 09:45:27,636 [DEBUG] Moving from ref0197794.11e5 to ref0197794.11e3 (p=1) 2017-11-14 09:45:27,636 [DEBUG] contig 2017-11-14 09:45:27,637 [DEBUG] who? ref0197794.11e5 ref0197794.11e3 2017-11-14 09:45:27,637 [DEBUG] Grabbing contig between nodes ref0197794.11e5 & ref0197794.11e3 - [trim 0, 0] 2017-11-14 09:45:27,637 [DEBUG] contig 9262 to 10385 2017-11-14 09:45:27,637 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,637 [DEBUG] Moving from ref0197794.11e3 to ref0197794.12e5 (p=1) 2017-11-14 09:45:27,637 [DEBUG] unimproved gap 2017-11-14 09:45:27,637 [DEBUG] Moving from ref0197794.12e5 to ref0197794.12e3 (p=1) 2017-11-14 09:45:27,637 [DEBUG] contig 2017-11-14 09:45:27,637 [DEBUG] who? ref0197794.12e5 ref0197794.12e3 2017-11-14 09:45:27,637 [DEBUG] Grabbing contig between nodes ref0197794.12e5 & ref0197794.12e3 - [trim 0, 0] 2017-11-14 09:45:27,637 [DEBUG] contig 10928 to 11139 2017-11-14 09:45:27,637 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,637 [DEBUG] Moving from ref0197794.12e3 to ref0197794.13e5 (p=1) 2017-11-14 09:45:27,638 [DEBUG] unimproved gap 2017-11-14 09:45:27,638 [DEBUG] Moving from ref0197794.13e5 to ref0197794.13e3 (p=1) 2017-11-14 09:45:27,638 [DEBUG] contig 2017-11-14 09:45:27,638 [DEBUG] who? ref0197794.13e5 ref0197794.13e3 2017-11-14 09:45:27,638 [DEBUG] Grabbing contig between nodes ref0197794.13e5 & ref0197794.13e3 - [trim 0, 0] 2017-11-14 09:45:27,638 [DEBUG] contig 11317 to 11353 2017-11-14 09:45:27,638 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,638 [DEBUG] Moving from ref0197794.13e3 to ref0197794.14e5 (p=1) 2017-11-14 09:45:27,638 [DEBUG] unimproved gap 2017-11-14 09:45:27,638 [DEBUG] Moving from ref0197794.14e5 to ref0197794.14e3 (p=1) 2017-11-14 09:45:27,638 [DEBUG] contig 2017-11-14 09:45:27,638 [DEBUG] who? ref0197794.14e5 ref0197794.14e3 2017-11-14 09:45:27,638 [DEBUG] Grabbing contig between nodes ref0197794.14e5 & ref0197794.14e3 - [trim 0, 0] 2017-11-14 09:45:27,639 [DEBUG] contig 11523 to 11565 2017-11-14 09:45:27,639 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,639 [DEBUG] Moving from ref0197794.14e3 to ref0197794.15e5 (p=1) 2017-11-14 09:45:27,639 [DEBUG] unimproved gap 2017-11-14 09:45:27,639 [DEBUG] Moving from ref0197794.15e5 to ref0197794.15e3 (p=1) 2017-11-14 09:45:27,639 [DEBUG] contig 2017-11-14 09:45:27,639 [DEBUG] who? ref0197794.15e5 ref0197794.15e3 2017-11-14 09:45:27,639 [DEBUG] Grabbing contig between nodes ref0197794.15e5 & ref0197794.15e3 - [trim 0, 0] 2017-11-14 09:45:27,639 [DEBUG] contig 11637 to 11693 2017-11-14 09:45:27,639 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,639 [DEBUG] Moving from ref0197794.15e3 to ref0197794.16e5 (p=1) 2017-11-14 09:45:27,639 [DEBUG] unimproved gap 2017-11-14 09:45:27,639 [DEBUG] Moving from ref0197794.16e5 to ref0197794.16e3 (p=1) 2017-11-14 09:45:27,640 [DEBUG] contig 2017-11-14 09:45:27,640 [DEBUG] who? ref0197794.16e5 ref0197794.16e3 2017-11-14 09:45:27,640 [DEBUG] Grabbing contig between nodes ref0197794.16e5 & ref0197794.16e3 - [trim 0, 0] 2017-11-14 09:45:27,640 [DEBUG] contig 11783 to 11838 2017-11-14 09:45:27,640 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,640 [DEBUG] Moving from ref0197794.16e3 to ref0197794.17e5 (p=1) 2017-11-14 09:45:27,640 [DEBUG] unimproved gap 2017-11-14 09:45:27,640 [DEBUG] Moving from ref0197794.17e5 to ref0197794.17e3 (p=1) 2017-11-14 09:45:27,640 [DEBUG] contig 2017-11-14 09:45:27,640 [DEBUG] who? ref0197794.17e5 ref0197794.17e3 2017-11-14 09:45:27,640 [DEBUG] Grabbing contig between nodes ref0197794.17e5 & ref0197794.17e3 - [trim 0, 0] 2017-11-14 09:45:27,640 [DEBUG] contig 12211 to 13384 2017-11-14 09:45:27,640 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,641 [DEBUG] Moving from ref0197794.17e3 to ref0197794.18e5 (p=1) 2017-11-14 09:45:27,641 [DEBUG] unimproved gap 2017-11-14 09:45:27,641 [DEBUG] Moving from ref0197794.18e5 to ref0197794.18e3 (p=1) 2017-11-14 09:45:27,641 [DEBUG] contig 2017-11-14 09:45:27,641 [DEBUG] who? ref0197794.18e5 ref0197794.18e3 2017-11-14 09:45:27,641 [DEBUG] Grabbing contig between nodes ref0197794.18e5 & ref0197794.18e3 - [trim 0, 0] 2017-11-14 09:45:27,641 [DEBUG] contig 13592 to 13626 2017-11-14 09:45:27,641 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,641 [DEBUG] Moving from ref0197794.18e3 to ref0197794.19e5 (p=1) 2017-11-14 09:45:27,641 [DEBUG] unimproved gap 2017-11-14 09:45:27,641 [DEBUG] Moving from ref0197794.19e5 to ref0197794.19e3 (p=1) 2017-11-14 09:45:27,641 [DEBUG] contig 2017-11-14 09:45:27,641 [DEBUG] who? ref0197794.19e5 ref0197794.19e3 2017-11-14 09:45:27,642 [DEBUG] Grabbing contig between nodes ref0197794.19e5 & ref0197794.19e3 - [trim 0, 0] 2017-11-14 09:45:27,642 [DEBUG] contig 13660 to 17265 2017-11-14 09:45:27,642 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,642 [DEBUG] Moving from ref0197794.19e3 to ref0197794.20e5 (p=1) 2017-11-14 09:45:27,642 [DEBUG] unimproved gap 2017-11-14 09:45:27,642 [DEBUG] Moving from ref0197794.20e5 to ref0197794e3 (p=1) 2017-11-14 09:45:27,642 [DEBUG] contig 2017-11-14 09:45:27,642 [DEBUG] who? ref0197794.20e5 ref0197794e3 2017-11-14 09:45:27,642 [DEBUG] Grabbing contig between nodes ref0197794.20e5 & ref0197794e3 - [trim 0, 0] 2017-11-14 09:45:27,642 [DEBUG] contig 17433 to 17750 2017-11-14 09:45:27,642 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,642 [DEBUG] Contig 19 2017-11-14 09:45:27,645 [DEBUG] Moving from ref0031264e3 to ref0031264.20e5 (p=1) 2017-11-14 09:45:27,645 [DEBUG] contig 2017-11-14 09:45:27,645 [DEBUG] who? ref0031264.20e5 ref0031264e3 2017-11-14 09:45:27,645 [DEBUG] Grabbing contig between nodes ref0031264.20e5 & ref0031264e3 - [trim 0, 0] 2017-11-14 09:45:27,645 [DEBUG] contig 17142 to 17507 2017-11-14 09:45:27,645 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,646 [DEBUG] Moving from ref0031264.20e5 to ref0031264.19e3 (p=1) 2017-11-14 09:45:27,646 [DEBUG] unimproved gap 2017-11-14 09:45:27,646 [DEBUG] Moving from ref0031264.19e3 to ref0031264.19e5 (p=1) 2017-11-14 09:45:27,646 [DEBUG] contig 2017-11-14 09:45:27,646 [DEBUG] who? ref0031264.19e5 ref0031264.19e3 2017-11-14 09:45:27,646 [DEBUG] Grabbing contig between nodes ref0031264.19e5 & ref0031264.19e3 - [trim 0, 0] 2017-11-14 09:45:27,646 [DEBUG] contig 15713 to 16886 2017-11-14 09:45:27,646 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,646 [DEBUG] Moving from ref0031264.19e5 to ref0031264.18e3 (p=1) 2017-11-14 09:45:27,646 [DEBUG] unimproved gap 2017-11-14 09:45:27,646 [DEBUG] Moving from ref0031264.18e3 to ref0031264.18e5 (p=1) 2017-11-14 09:45:27,646 [DEBUG] contig 2017-11-14 09:45:27,646 [DEBUG] who? ref0031264.18e5 ref0031264.18e3 2017-11-14 09:45:27,646 [DEBUG] Grabbing contig between nodes ref0031264.18e5 & ref0031264.18e3 - [trim 0, 0] 2017-11-14 09:45:27,647 [DEBUG] contig 15356 to 15539 2017-11-14 09:45:27,647 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,647 [DEBUG] Moving from ref0031264.18e5 to ref0031264.17e3 (p=1) 2017-11-14 09:45:27,647 [DEBUG] unimproved gap 2017-11-14 09:45:27,647 [DEBUG] Moving from ref0031264.17e3 to ref0031264.17e5 (p=1) 2017-11-14 09:45:27,647 [DEBUG] contig 2017-11-14 09:45:27,647 [DEBUG] who? ref0031264.17e5 ref0031264.17e3 2017-11-14 09:45:27,647 [DEBUG] Grabbing contig between nodes ref0031264.17e5 & ref0031264.17e3 - [trim 0, 0] 2017-11-14 09:45:27,647 [DEBUG] contig 14378 to 15192 2017-11-14 09:45:27,647 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,647 [DEBUG] Moving from ref0031264.17e5 to ref0031264.16e3 (p=1) 2017-11-14 09:45:27,647 [DEBUG] unimproved gap 2017-11-14 09:45:27,647 [DEBUG] Moving from ref0031264.16e3 to ref0031264.16e5 (p=1) 2017-11-14 09:45:27,648 [DEBUG] contig 2017-11-14 09:45:27,648 [DEBUG] who? ref0031264.16e5 ref0031264.16e3 2017-11-14 09:45:27,648 [DEBUG] Grabbing contig between nodes ref0031264.16e5 & ref0031264.16e3 - [trim 0, 0] 2017-11-14 09:45:27,648 [DEBUG] contig 13990 to 14119 2017-11-14 09:45:27,648 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,648 [DEBUG] Moving from ref0031264.16e5 to ref0031264.15e3 (p=1) 2017-11-14 09:45:27,648 [DEBUG] unimproved gap 2017-11-14 09:45:27,648 [DEBUG] Moving from ref0031264.15e3 to ref0031264.15e5 (p=1) 2017-11-14 09:45:27,648 [DEBUG] contig 2017-11-14 09:45:27,648 [DEBUG] who? ref0031264.15e5 ref0031264.15e3 2017-11-14 09:45:27,648 [DEBUG] Grabbing contig between nodes ref0031264.15e5 & ref0031264.15e3 - [trim 0, 0] 2017-11-14 09:45:27,648 [DEBUG] contig 13193 to 13622 2017-11-14 09:45:27,648 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,649 [DEBUG] Moving from ref0031264.15e5 to ref0031264.14e3 (p=1) 2017-11-14 09:45:27,649 [DEBUG] unimproved gap 2017-11-14 09:45:27,649 [DEBUG] Moving from ref0031264.14e3 to ref0031264.14e5 (p=1) 2017-11-14 09:45:27,649 [DEBUG] contig 2017-11-14 09:45:27,649 [DEBUG] who? ref0031264.14e5 ref0031264.14e3 2017-11-14 09:45:27,649 [DEBUG] Grabbing contig between nodes ref0031264.14e5 & ref0031264.14e3 - [trim 0, 0] 2017-11-14 09:45:27,649 [DEBUG] contig 11473 to 13028 2017-11-14 09:45:27,649 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,649 [DEBUG] Moving from ref0031264.14e5 to ref0031264.13e3 (p=1) 2017-11-14 09:45:27,649 [DEBUG] unimproved gap 2017-11-14 09:45:27,649 [DEBUG] Moving from ref0031264.13e3 to ref0031264.13e5 (p=1) 2017-11-14 09:45:27,649 [DEBUG] contig 2017-11-14 09:45:27,649 [DEBUG] who? ref0031264.13e5 ref0031264.13e3 2017-11-14 09:45:27,649 [DEBUG] Grabbing contig between nodes ref0031264.13e5 & ref0031264.13e3 - [trim 0, 0] 2017-11-14 09:45:27,650 [DEBUG] contig 11267 to 11436 2017-11-14 09:45:27,650 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,650 [DEBUG] Moving from ref0031264.13e5 to ref0031264.12e3 (p=1) 2017-11-14 09:45:27,650 [DEBUG] unimproved gap 2017-11-14 09:45:27,650 [DEBUG] Moving from ref0031264.12e3 to ref0031264.12e5 (p=1) 2017-11-14 09:45:27,650 [DEBUG] contig 2017-11-14 09:45:27,650 [DEBUG] who? ref0031264.12e5 ref0031264.12e3 2017-11-14 09:45:27,650 [DEBUG] Grabbing contig between nodes ref0031264.12e5 & ref0031264.12e3 - [trim 0, 0] 2017-11-14 09:45:27,650 [DEBUG] contig 10980 to 11233 2017-11-14 09:45:27,650 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,650 [DEBUG] Moving from ref0031264.12e5 to ref0031264.11e3 (p=1) 2017-11-14 09:45:27,650 [DEBUG] unimproved gap 2017-11-14 09:45:27,650 [DEBUG] Moving from ref0031264.11e3 to ref0031264.11e5 (p=1) 2017-11-14 09:45:27,651 [DEBUG] contig 2017-11-14 09:45:27,651 [DEBUG] who? ref0031264.11e5 ref0031264.11e3 2017-11-14 09:45:27,651 [DEBUG] Grabbing contig between nodes ref0031264.11e5 & ref0031264.11e3 - [trim 0, 0] 2017-11-14 09:45:27,651 [DEBUG] contig 10901 to 10953 2017-11-14 09:45:27,651 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,651 [DEBUG] Moving from ref0031264.11e5 to ref0031264.10e3 (p=1) 2017-11-14 09:45:27,651 [DEBUG] unimproved gap 2017-11-14 09:45:27,651 [DEBUG] Moving from ref0031264.10e3 to ref0031264.10e5 (p=1) 2017-11-14 09:45:27,651 [DEBUG] contig 2017-11-14 09:45:27,651 [DEBUG] who? ref0031264.10e5 ref0031264.10e3 2017-11-14 09:45:27,651 [DEBUG] Grabbing contig between nodes ref0031264.10e5 & ref0031264.10e3 - [trim 0, 0] 2017-11-14 09:45:27,651 [DEBUG] contig 9567 to 10836 2017-11-14 09:45:27,651 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,652 [DEBUG] Moving from ref0031264.10e5 to ref0031264.9e3 (p=1) 2017-11-14 09:45:27,652 [DEBUG] unimproved gap 2017-11-14 09:45:27,652 [DEBUG] Moving from ref0031264.9e3 to ref0031264.9e5 (p=1) 2017-11-14 09:45:27,652 [DEBUG] contig 2017-11-14 09:45:27,652 [DEBUG] who? ref0031264.9e5 ref0031264.9e3 2017-11-14 09:45:27,652 [DEBUG] Grabbing contig between nodes ref0031264.9e5 & ref0031264.9e3 - [trim 0, 0] 2017-11-14 09:45:27,652 [DEBUG] contig 9146 to 9397 2017-11-14 09:45:27,652 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,652 [DEBUG] Moving from ref0031264.9e5 to ref0031264.8e3 (p=1) 2017-11-14 09:45:27,652 [DEBUG] unimproved gap 2017-11-14 09:45:27,652 [DEBUG] Moving from ref0031264.8e3 to ref0031264.8e5 (p=1) 2017-11-14 09:45:27,652 [DEBUG] contig 2017-11-14 09:45:27,653 [DEBUG] who? ref0031264.8e5 ref0031264.8e3 2017-11-14 09:45:27,653 [DEBUG] Grabbing contig between nodes ref0031264.8e5 & ref0031264.8e3 - [trim 0, 0] 2017-11-14 09:45:27,653 [DEBUG] contig 8222 to 9022 2017-11-14 09:45:27,653 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,653 [DEBUG] Moving from ref0031264.8e5 to ref0031264.7e3 (p=1) 2017-11-14 09:45:27,653 [DEBUG] unimproved gap 2017-11-14 09:45:27,653 [DEBUG] Moving from ref0031264.7e3 to ref0031264.7e5 (p=1) 2017-11-14 09:45:27,653 [DEBUG] contig 2017-11-14 09:45:27,653 [DEBUG] who? ref0031264.7e5 ref0031264.7e3 2017-11-14 09:45:27,653 [DEBUG] Grabbing contig between nodes ref0031264.7e5 & ref0031264.7e3 - [trim 0, 0] 2017-11-14 09:45:27,653 [DEBUG] contig 7522 to 7849 2017-11-14 09:45:27,653 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,653 [DEBUG] Moving from ref0031264.7e5 to ref0031264.6e3 (p=1) 2017-11-14 09:45:27,653 [DEBUG] unimproved gap 2017-11-14 09:45:27,654 [DEBUG] Moving from ref0031264.6e3 to ref0031264.6e5 (p=1) 2017-11-14 09:45:27,654 [DEBUG] contig 2017-11-14 09:45:27,654 [DEBUG] who? ref0031264.6e5 ref0031264.6e3 2017-11-14 09:45:27,654 [DEBUG] Grabbing contig between nodes ref0031264.6e5 & ref0031264.6e3 - [trim 0, 0] 2017-11-14 09:45:27,654 [DEBUG] contig 4887 to 7301 2017-11-14 09:45:27,654 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,654 [DEBUG] Moving from ref0031264.6e5 to ref0031264.5e3 (p=1) 2017-11-14 09:45:27,654 [DEBUG] unimproved gap 2017-11-14 09:45:27,654 [DEBUG] Moving from ref0031264.5e3 to ref0031264.5e5 (p=1) 2017-11-14 09:45:27,654 [DEBUG] contig 2017-11-14 09:45:27,654 [DEBUG] who? ref0031264.5e5 ref0031264.5e3 2017-11-14 09:45:27,654 [DEBUG] Grabbing contig between nodes ref0031264.5e5 & ref0031264.5e3 - [trim 0, 0] 2017-11-14 09:45:27,654 [DEBUG] contig 4705 to 4764 2017-11-14 09:45:27,655 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,655 [DEBUG] Moving from ref0031264.5e5 to ref0031264.4e3 (p=1) 2017-11-14 09:45:27,655 [DEBUG] unimproved gap 2017-11-14 09:45:27,655 [DEBUG] Moving from ref0031264.4e3 to ref0031264.4e5 (p=1) 2017-11-14 09:45:27,655 [DEBUG] contig 2017-11-14 09:45:27,655 [DEBUG] who? ref0031264.4e5 ref0031264.4e3 2017-11-14 09:45:27,655 [DEBUG] Grabbing contig between nodes ref0031264.4e5 & ref0031264.4e3 - [trim 0, 0] 2017-11-14 09:45:27,655 [DEBUG] contig 3588 to 4400 2017-11-14 09:45:27,655 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,655 [DEBUG] Moving from ref0031264.4e5 to ref0031264.3e3 (p=1) 2017-11-14 09:45:27,655 [DEBUG] unimproved gap 2017-11-14 09:45:27,655 [DEBUG] Moving from ref0031264.3e3 to ref0031264.3e5 (p=1) 2017-11-14 09:45:27,655 [DEBUG] contig 2017-11-14 09:45:27,655 [DEBUG] who? ref0031264.3e5 ref0031264.3e3 2017-11-14 09:45:27,656 [DEBUG] Grabbing contig between nodes ref0031264.3e5 & ref0031264.3e3 - [trim 0, 0] 2017-11-14 09:45:27,656 [DEBUG] contig 2727 to 3453 2017-11-14 09:45:27,656 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,656 [DEBUG] Moving from ref0031264.3e5 to ref0031264.2e3 (p=1) 2017-11-14 09:45:27,656 [DEBUG] unimproved gap 2017-11-14 09:45:27,656 [DEBUG] Moving from ref0031264.2e3 to ref0031264.2e5 (p=1) 2017-11-14 09:45:27,656 [DEBUG] contig 2017-11-14 09:45:27,656 [DEBUG] who? ref0031264.2e5 ref0031264.2e3 2017-11-14 09:45:27,656 [DEBUG] Grabbing contig between nodes ref0031264.2e5 & ref0031264.2e3 - [trim 0, 0] 2017-11-14 09:45:27,656 [DEBUG] contig 2298 to 2444 2017-11-14 09:45:27,656 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,656 [DEBUG] Moving from ref0031264.2e5 to ref0031264.1e3 (p=1) 2017-11-14 09:45:27,656 [DEBUG] unimproved gap 2017-11-14 09:45:27,657 [DEBUG] Moving from ref0031264.1e3 to ref0031264.1e5 (p=1) 2017-11-14 09:45:27,657 [DEBUG] contig 2017-11-14 09:45:27,657 [DEBUG] who? ref0031264.1e5 ref0031264.1e3 2017-11-14 09:45:27,657 [DEBUG] Grabbing contig between nodes ref0031264.1e5 & ref0031264.1e3 - [trim 0, 0] 2017-11-14 09:45:27,657 [DEBUG] contig 2131 to 2163 2017-11-14 09:45:27,657 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,657 [DEBUG] Moving from ref0031264.1e5 to ref0031264.0e3 (p=1) 2017-11-14 09:45:27,657 [DEBUG] unimproved gap 2017-11-14 09:45:27,657 [DEBUG] Moving from ref0031264.0e3 to ref0031264e5 (p=1) 2017-11-14 09:45:27,657 [DEBUG] contig 2017-11-14 09:45:27,657 [DEBUG] who? ref0031264e5 ref0031264.0e3 2017-11-14 09:45:27,657 [DEBUG] Grabbing contig between nodes ref0031264e5 & ref0031264.0e3 - [trim 0, 0] 2017-11-14 09:45:27,657 [DEBUG] contig 0 to 2001 2017-11-14 09:45:27,658 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,658 [DEBUG] FirstFlipping 19 2017-11-14 09:45:27,658 [DEBUG] Contig 20 2017-11-14 09:45:27,661 [DEBUG] Moving from ref0517601e3 to ref0517601.20e5 (p=1) 2017-11-14 09:45:27,661 [DEBUG] contig 2017-11-14 09:45:27,661 [DEBUG] who? ref0517601.20e5 ref0517601e3 2017-11-14 09:45:27,661 [DEBUG] Grabbing contig between nodes ref0517601.20e5 & ref0517601e3 - [trim 0, 0] 2017-11-14 09:45:27,661 [DEBUG] contig 20547 to 20592 2017-11-14 09:45:27,661 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,661 [DEBUG] Moving from ref0517601.20e5 to ref0517601.19e3 (p=1) 2017-11-14 09:45:27,661 [DEBUG] unimproved gap 2017-11-14 09:45:27,661 [DEBUG] Moving from ref0517601.19e3 to ref0517601.19e5 (p=1) 2017-11-14 09:45:27,661 [DEBUG] contig 2017-11-14 09:45:27,661 [DEBUG] who? ref0517601.19e5 ref0517601.19e3 2017-11-14 09:45:27,661 [DEBUG] Grabbing contig between nodes ref0517601.19e5 & ref0517601.19e3 - [trim 0, 0] 2017-11-14 09:45:27,661 [DEBUG] contig 18994 to 20130 2017-11-14 09:45:27,662 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,662 [DEBUG] Moving from ref0517601.19e5 to ref0517601.18e3 (p=1) 2017-11-14 09:45:27,662 [DEBUG] unimproved gap 2017-11-14 09:45:27,662 [DEBUG] Moving from ref0517601.18e3 to ref0517601.18e5 (p=1) 2017-11-14 09:45:27,662 [DEBUG] contig 2017-11-14 09:45:27,662 [DEBUG] who? ref0517601.18e5 ref0517601.18e3 2017-11-14 09:45:27,662 [DEBUG] Grabbing contig between nodes ref0517601.18e5 & ref0517601.18e3 - [trim 0, 0] 2017-11-14 09:45:27,662 [DEBUG] contig 14753 to 18742 2017-11-14 09:45:27,662 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,662 [DEBUG] Moving from ref0517601.18e5 to ref0517601.17e3 (p=1) 2017-11-14 09:45:27,662 [DEBUG] unimproved gap 2017-11-14 09:45:27,662 [DEBUG] Moving from ref0517601.17e3 to ref0517601.17e5 (p=1) 2017-11-14 09:45:27,662 [DEBUG] contig 2017-11-14 09:45:27,663 [DEBUG] who? ref0517601.17e5 ref0517601.17e3 2017-11-14 09:45:27,663 [DEBUG] Grabbing contig between nodes ref0517601.17e5 & ref0517601.17e3 - [trim 0, 0] 2017-11-14 09:45:27,663 [DEBUG] contig 14436 to 14461 2017-11-14 09:45:27,663 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,663 [DEBUG] Moving from ref0517601.17e5 to ref0517601.16e3 (p=1) 2017-11-14 09:45:27,663 [DEBUG] unimproved gap 2017-11-14 09:45:27,663 [DEBUG] Moving from ref0517601.16e3 to ref0517601.16e5 (p=1) 2017-11-14 09:45:27,663 [DEBUG] contig 2017-11-14 09:45:27,663 [DEBUG] who? ref0517601.16e5 ref0517601.16e3 2017-11-14 09:45:27,663 [DEBUG] Grabbing contig between nodes ref0517601.16e5 & ref0517601.16e3 - [trim 0, 0] 2017-11-14 09:45:27,663 [DEBUG] contig 13826 to 14264 2017-11-14 09:45:27,663 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,663 [DEBUG] Moving from ref0517601.16e5 to ref0517601.15e3 (p=1) 2017-11-14 09:45:27,663 [DEBUG] unimproved gap 2017-11-14 09:45:27,664 [DEBUG] Moving from ref0517601.15e3 to ref0517601.15e5 (p=1) 2017-11-14 09:45:27,664 [DEBUG] contig 2017-11-14 09:45:27,664 [DEBUG] who? ref0517601.15e5 ref0517601.15e3 2017-11-14 09:45:27,664 [DEBUG] Grabbing contig between nodes ref0517601.15e5 & ref0517601.15e3 - [trim 0, 0] 2017-11-14 09:45:27,664 [DEBUG] contig 13154 to 13578 2017-11-14 09:45:27,664 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,664 [DEBUG] Moving from ref0517601.15e5 to ref0517601.14e3 (p=1) 2017-11-14 09:45:27,664 [DEBUG] unimproved gap 2017-11-14 09:45:27,664 [DEBUG] Moving from ref0517601.14e3 to ref0517601.14e5 (p=1) 2017-11-14 09:45:27,664 [DEBUG] contig 2017-11-14 09:45:27,664 [DEBUG] who? ref0517601.14e5 ref0517601.14e3 2017-11-14 09:45:27,664 [DEBUG] Grabbing contig between nodes ref0517601.14e5 & ref0517601.14e3 - [trim 0, 0] 2017-11-14 09:45:27,664 [DEBUG] contig 11445 to 12889 2017-11-14 09:45:27,665 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,665 [DEBUG] Moving from ref0517601.14e5 to ref0517601.13e3 (p=1) 2017-11-14 09:45:27,665 [DEBUG] unimproved gap 2017-11-14 09:45:27,665 [DEBUG] Moving from ref0517601.13e3 to ref0517601.13e5 (p=1) 2017-11-14 09:45:27,665 [DEBUG] contig 2017-11-14 09:45:27,665 [DEBUG] who? ref0517601.13e5 ref0517601.13e3 2017-11-14 09:45:27,665 [DEBUG] Grabbing contig between nodes ref0517601.13e5 & ref0517601.13e3 - [trim 0, 0] 2017-11-14 09:45:27,665 [DEBUG] contig 9801 to 11305 2017-11-14 09:45:27,665 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,665 [DEBUG] Moving from ref0517601.13e5 to ref0517601.12e3 (p=1) 2017-11-14 09:45:27,665 [DEBUG] unimproved gap 2017-11-14 09:45:27,665 [DEBUG] Moving from ref0517601.12e3 to ref0517601.12e5 (p=1) 2017-11-14 09:45:27,665 [DEBUG] contig 2017-11-14 09:45:27,666 [DEBUG] who? ref0517601.12e5 ref0517601.12e3 2017-11-14 09:45:27,666 [DEBUG] Grabbing contig between nodes ref0517601.12e5 & ref0517601.12e3 - [trim 0, 0] 2017-11-14 09:45:27,666 [DEBUG] contig 8994 to 9762 2017-11-14 09:45:27,666 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,666 [DEBUG] Moving from ref0517601.12e5 to ref0517601.11e3 (p=1) 2017-11-14 09:45:27,666 [DEBUG] unimproved gap 2017-11-14 09:45:27,666 [DEBUG] Moving from ref0517601.11e3 to ref0517601.11e5 (p=1) 2017-11-14 09:45:27,666 [DEBUG] contig 2017-11-14 09:45:27,666 [DEBUG] who? ref0517601.11e5 ref0517601.11e3 2017-11-14 09:45:27,666 [DEBUG] Grabbing contig between nodes ref0517601.11e5 & ref0517601.11e3 - [trim 0, 0] 2017-11-14 09:45:27,666 [DEBUG] contig 8186 to 8498 2017-11-14 09:45:27,666 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,666 [DEBUG] Moving from ref0517601.11e5 to ref0517601.10e3 (p=1) 2017-11-14 09:45:27,667 [DEBUG] unimproved gap 2017-11-14 09:45:27,667 [DEBUG] Moving from ref0517601.10e3 to ref0517601.10e5 (p=1) 2017-11-14 09:45:27,667 [DEBUG] contig 2017-11-14 09:45:27,667 [DEBUG] who? ref0517601.10e5 ref0517601.10e3 2017-11-14 09:45:27,667 [DEBUG] Grabbing contig between nodes ref0517601.10e5 & ref0517601.10e3 - [trim 0, 0] 2017-11-14 09:45:27,667 [DEBUG] contig 7849 to 8139 2017-11-14 09:45:27,667 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,667 [DEBUG] Moving from ref0517601.10e5 to ref0517601.9e3 (p=1) 2017-11-14 09:45:27,667 [DEBUG] unimproved gap 2017-11-14 09:45:27,667 [DEBUG] Moving from ref0517601.9e3 to ref0517601.9e5 (p=1) 2017-11-14 09:45:27,667 [DEBUG] contig 2017-11-14 09:45:27,667 [DEBUG] who? ref0517601.9e5 ref0517601.9e3 2017-11-14 09:45:27,667 [DEBUG] Grabbing contig between nodes ref0517601.9e5 & ref0517601.9e3 - [trim 0, 0] 2017-11-14 09:45:27,668 [DEBUG] contig 6963 to 7617 2017-11-14 09:45:27,668 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,668 [DEBUG] Moving from ref0517601.9e5 to ref0517601.8e3 (p=1) 2017-11-14 09:45:27,668 [DEBUG] unimproved gap 2017-11-14 09:45:27,668 [DEBUG] Moving from ref0517601.8e3 to ref0517601.8e5 (p=1) 2017-11-14 09:45:27,668 [DEBUG] contig 2017-11-14 09:45:27,668 [DEBUG] who? ref0517601.8e5 ref0517601.8e3 2017-11-14 09:45:27,668 [DEBUG] Grabbing contig between nodes ref0517601.8e5 & ref0517601.8e3 - [trim 0, 0] 2017-11-14 09:45:27,668 [DEBUG] contig 6362 to 6767 2017-11-14 09:45:27,668 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,668 [DEBUG] Moving from ref0517601.8e5 to ref0517601.7e3 (p=1) 2017-11-14 09:45:27,668 [DEBUG] unimproved gap 2017-11-14 09:45:27,668 [DEBUG] Moving from ref0517601.7e3 to ref0517601.7e5 (p=1) 2017-11-14 09:45:27,669 [DEBUG] contig 2017-11-14 09:45:27,669 [DEBUG] who? ref0517601.7e5 ref0517601.7e3 2017-11-14 09:45:27,669 [DEBUG] Grabbing contig between nodes ref0517601.7e5 & ref0517601.7e3 - [trim 0, 0] 2017-11-14 09:45:27,669 [DEBUG] contig 5728 to 6277 2017-11-14 09:45:27,669 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,669 [DEBUG] Moving from ref0517601.7e5 to ref0517601.6e3 (p=1) 2017-11-14 09:45:27,669 [DEBUG] unimproved gap 2017-11-14 09:45:27,669 [DEBUG] Moving from ref0517601.6e3 to ref0517601.6e5 (p=1) 2017-11-14 09:45:27,669 [DEBUG] contig 2017-11-14 09:45:27,669 [DEBUG] who? ref0517601.6e5 ref0517601.6e3 2017-11-14 09:45:27,669 [DEBUG] Grabbing contig between nodes ref0517601.6e5 & ref0517601.6e3 - [trim 0, 0] 2017-11-14 09:45:27,669 [DEBUG] contig 5641 to 5691 2017-11-14 09:45:27,669 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,669 [DEBUG] Moving from ref0517601.6e5 to ref0517601.5e3 (p=1) 2017-11-14 09:45:27,670 [DEBUG] unimproved gap 2017-11-14 09:45:27,670 [DEBUG] Moving from ref0517601.5e3 to ref0517601.5e5 (p=1) 2017-11-14 09:45:27,670 [DEBUG] contig 2017-11-14 09:45:27,670 [DEBUG] who? ref0517601.5e5 ref0517601.5e3 2017-11-14 09:45:27,670 [DEBUG] Grabbing contig between nodes ref0517601.5e5 & ref0517601.5e3 - [trim 0, 0] 2017-11-14 09:45:27,670 [DEBUG] contig 5125 to 5587 2017-11-14 09:45:27,670 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,670 [DEBUG] Moving from ref0517601.5e5 to ref0517601.4e3 (p=1) 2017-11-14 09:45:27,670 [DEBUG] unimproved gap 2017-11-14 09:45:27,670 [DEBUG] Moving from ref0517601.4e3 to ref0517601.4e5 (p=1) 2017-11-14 09:45:27,670 [DEBUG] contig 2017-11-14 09:45:27,670 [DEBUG] who? ref0517601.4e5 ref0517601.4e3 2017-11-14 09:45:27,670 [DEBUG] Grabbing contig between nodes ref0517601.4e5 & ref0517601.4e3 - [trim 0, 0] 2017-11-14 09:45:27,671 [DEBUG] contig 3361 to 4935 2017-11-14 09:45:27,671 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,671 [DEBUG] Moving from ref0517601.4e5 to ref0517601.3e3 (p=1) 2017-11-14 09:45:27,671 [DEBUG] unimproved gap 2017-11-14 09:45:27,671 [DEBUG] Moving from ref0517601.3e3 to ref0517601.3e5 (p=1) 2017-11-14 09:45:27,671 [DEBUG] contig 2017-11-14 09:45:27,671 [DEBUG] who? ref0517601.3e5 ref0517601.3e3 2017-11-14 09:45:27,671 [DEBUG] Grabbing contig between nodes ref0517601.3e5 & ref0517601.3e3 - [trim 0, 0] 2017-11-14 09:45:27,671 [DEBUG] contig 1255 to 3314 2017-11-14 09:45:27,671 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,671 [DEBUG] Moving from ref0517601.3e5 to ref0517601.2e3 (p=1) 2017-11-14 09:45:27,671 [DEBUG] unimproved gap 2017-11-14 09:45:27,671 [DEBUG] Moving from ref0517601.2e3 to ref0517601.2e5 (p=1) 2017-11-14 09:45:27,671 [DEBUG] contig 2017-11-14 09:45:27,672 [DEBUG] who? ref0517601.2e5 ref0517601.2e3 2017-11-14 09:45:27,672 [DEBUG] Grabbing contig between nodes ref0517601.2e5 & ref0517601.2e3 - [trim 0, 0] 2017-11-14 09:45:27,672 [DEBUG] contig 836 to 869 2017-11-14 09:45:27,672 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,672 [DEBUG] Moving from ref0517601.2e5 to ref0517601.1e3 (p=1) 2017-11-14 09:45:27,672 [DEBUG] unimproved gap 2017-11-14 09:45:27,672 [DEBUG] Moving from ref0517601.1e3 to ref0517601.1e5 (p=1) 2017-11-14 09:45:27,672 [DEBUG] contig 2017-11-14 09:45:27,672 [DEBUG] who? ref0517601.1e5 ref0517601.1e3 2017-11-14 09:45:27,672 [DEBUG] Grabbing contig between nodes ref0517601.1e5 & ref0517601.1e3 - [trim 0, 0] 2017-11-14 09:45:27,672 [DEBUG] contig 561 to 712 2017-11-14 09:45:27,672 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,672 [DEBUG] Moving from ref0517601.1e5 to ref0517601.0e3 (p=1) 2017-11-14 09:45:27,673 [DEBUG] unimproved gap 2017-11-14 09:45:27,673 [DEBUG] Moving from ref0517601.0e3 to ref0517601e5 (p=1) 2017-11-14 09:45:27,673 [DEBUG] contig 2017-11-14 09:45:27,673 [DEBUG] who? ref0517601e5 ref0517601.0e3 2017-11-14 09:45:27,673 [DEBUG] Grabbing contig between nodes ref0517601e5 & ref0517601.0e3 - [trim 0, 0] 2017-11-14 09:45:27,673 [DEBUG] contig 0 to 161 2017-11-14 09:45:27,673 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,673 [DEBUG] FirstFlipping 20 2017-11-14 09:45:27,673 [DEBUG] Contig 21 2017-11-14 09:45:27,676 [DEBUG] Moving from ref0046415e5 to ref0046415.0e3 (p=1) 2017-11-14 09:45:27,676 [DEBUG] contig 2017-11-14 09:45:27,676 [DEBUG] who? ref0046415e5 ref0046415.0e3 2017-11-14 09:45:27,676 [DEBUG] Grabbing contig between nodes ref0046415e5 & ref0046415.0e3 - [trim 0, 0] 2017-11-14 09:45:27,676 [DEBUG] contig 0 to 177 2017-11-14 09:45:27,676 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,676 [DEBUG] Moving from ref0046415.0e3 to ref0046415.1e5 (p=1) 2017-11-14 09:45:27,677 [DEBUG] unimproved gap 2017-11-14 09:45:27,677 [DEBUG] Moving from ref0046415.1e5 to ref0046415.1e3 (p=1) 2017-11-14 09:45:27,677 [DEBUG] contig 2017-11-14 09:45:27,677 [DEBUG] who? ref0046415.1e5 ref0046415.1e3 2017-11-14 09:45:27,677 [DEBUG] Grabbing contig between nodes ref0046415.1e5 & ref0046415.1e3 - [trim 0, 0] 2017-11-14 09:45:27,677 [DEBUG] contig 509 to 1519 2017-11-14 09:45:27,677 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,677 [DEBUG] Moving from ref0046415.1e3 to ref0046415.2e5 (p=1) 2017-11-14 09:45:27,677 [DEBUG] unimproved gap 2017-11-14 09:45:27,677 [DEBUG] Moving from ref0046415.2e5 to ref0046415.2e3 (p=1) 2017-11-14 09:45:27,677 [DEBUG] contig 2017-11-14 09:45:27,677 [DEBUG] who? ref0046415.2e5 ref0046415.2e3 2017-11-14 09:45:27,677 [DEBUG] Grabbing contig between nodes ref0046415.2e5 & ref0046415.2e3 - [trim 0, 0] 2017-11-14 09:45:27,678 [DEBUG] contig 1800 to 1882 2017-11-14 09:45:27,678 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,678 [DEBUG] Moving from ref0046415.2e3 to ref0046415.3e5 (p=1) 2017-11-14 09:45:27,678 [DEBUG] unimproved gap 2017-11-14 09:45:27,678 [DEBUG] Moving from ref0046415.3e5 to ref0046415.3e3 (p=1) 2017-11-14 09:45:27,678 [DEBUG] contig 2017-11-14 09:45:27,678 [DEBUG] who? ref0046415.3e5 ref0046415.3e3 2017-11-14 09:45:27,678 [DEBUG] Grabbing contig between nodes ref0046415.3e5 & ref0046415.3e3 - [trim 0, 0] 2017-11-14 09:45:27,678 [DEBUG] contig 2055 to 2315 2017-11-14 09:45:27,678 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,678 [DEBUG] Moving from ref0046415.3e3 to ref0046415.4e5 (p=1) 2017-11-14 09:45:27,678 [DEBUG] unimproved gap 2017-11-14 09:45:27,679 [DEBUG] Moving from ref0046415.4e5 to ref0046415.4e3 (p=1) 2017-11-14 09:45:27,679 [DEBUG] contig 2017-11-14 09:45:27,679 [DEBUG] who? ref0046415.4e5 ref0046415.4e3 2017-11-14 09:45:27,679 [DEBUG] Grabbing contig between nodes ref0046415.4e5 & ref0046415.4e3 - [trim 0, 0] 2017-11-14 09:45:27,679 [DEBUG] contig 2620 to 4015 2017-11-14 09:45:27,679 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,679 [DEBUG] Moving from ref0046415.4e3 to ref0046415.5e5 (p=1) 2017-11-14 09:45:27,679 [DEBUG] unimproved gap 2017-11-14 09:45:27,679 [DEBUG] Moving from ref0046415.5e5 to ref0046415.5e3 (p=1) 2017-11-14 09:45:27,679 [DEBUG] contig 2017-11-14 09:45:27,679 [DEBUG] who? ref0046415.5e5 ref0046415.5e3 2017-11-14 09:45:27,679 [DEBUG] Grabbing contig between nodes ref0046415.5e5 & ref0046415.5e3 - [trim 0, 0] 2017-11-14 09:45:27,679 [DEBUG] contig 4524 to 5153 2017-11-14 09:45:27,679 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,680 [DEBUG] Moving from ref0046415.5e3 to ref0046415.6e5 (p=1) 2017-11-14 09:45:27,680 [DEBUG] unimproved gap 2017-11-14 09:45:27,680 [DEBUG] Moving from ref0046415.6e5 to ref0046415.6e3 (p=1) 2017-11-14 09:45:27,680 [DEBUG] contig 2017-11-14 09:45:27,680 [DEBUG] who? ref0046415.6e5 ref0046415.6e3 2017-11-14 09:45:27,680 [DEBUG] Grabbing contig between nodes ref0046415.6e5 & ref0046415.6e3 - [trim 0, 0] 2017-11-14 09:45:27,680 [DEBUG] contig 5324 to 6539 2017-11-14 09:45:27,680 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,680 [DEBUG] Moving from ref0046415.6e3 to ref0046415.7e5 (p=1) 2017-11-14 09:45:27,680 [DEBUG] unimproved gap 2017-11-14 09:45:27,680 [DEBUG] Moving from ref0046415.7e5 to ref0046415.7e3 (p=1) 2017-11-14 09:45:27,680 [DEBUG] contig 2017-11-14 09:45:27,680 [DEBUG] who? ref0046415.7e5 ref0046415.7e3 2017-11-14 09:45:27,681 [DEBUG] Grabbing contig between nodes ref0046415.7e5 & ref0046415.7e3 - [trim 0, 0] 2017-11-14 09:45:27,681 [DEBUG] contig 6932 to 7280 2017-11-14 09:45:27,681 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,681 [DEBUG] Moving from ref0046415.7e3 to ref0046415.8e5 (p=1) 2017-11-14 09:45:27,681 [DEBUG] unimproved gap 2017-11-14 09:45:27,681 [DEBUG] Moving from ref0046415.8e5 to ref0046415.8e3 (p=1) 2017-11-14 09:45:27,681 [DEBUG] contig 2017-11-14 09:45:27,681 [DEBUG] who? ref0046415.8e5 ref0046415.8e3 2017-11-14 09:45:27,681 [DEBUG] Grabbing contig between nodes ref0046415.8e5 & ref0046415.8e3 - [trim 0, 0] 2017-11-14 09:45:27,681 [DEBUG] contig 7591 to 8279 2017-11-14 09:45:27,681 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,681 [DEBUG] Moving from ref0046415.8e3 to ref0046415.9e5 (p=1) 2017-11-14 09:45:27,681 [DEBUG] unimproved gap 2017-11-14 09:45:27,682 [DEBUG] Moving from ref0046415.9e5 to ref0046415.9e3 (p=1) 2017-11-14 09:45:27,682 [DEBUG] contig 2017-11-14 09:45:27,682 [DEBUG] who? ref0046415.9e5 ref0046415.9e3 2017-11-14 09:45:27,682 [DEBUG] Grabbing contig between nodes ref0046415.9e5 & ref0046415.9e3 - [trim 0, 0] 2017-11-14 09:45:27,682 [DEBUG] contig 8424 to 9368 2017-11-14 09:45:27,682 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,682 [DEBUG] Moving from ref0046415.9e3 to ref0046415.10e5 (p=1) 2017-11-14 09:45:27,682 [DEBUG] unimproved gap 2017-11-14 09:45:27,682 [DEBUG] Moving from ref0046415.10e5 to ref0046415.10e3 (p=1) 2017-11-14 09:45:27,682 [DEBUG] contig 2017-11-14 09:45:27,682 [DEBUG] who? ref0046415.10e5 ref0046415.10e3 2017-11-14 09:45:27,682 [DEBUG] Grabbing contig between nodes ref0046415.10e5 & ref0046415.10e3 - [trim 0, 0] 2017-11-14 09:45:27,682 [DEBUG] contig 9748 to 9922 2017-11-14 09:45:27,682 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,683 [DEBUG] Moving from ref0046415.10e3 to ref0046415.11e5 (p=1) 2017-11-14 09:45:27,683 [DEBUG] unimproved gap 2017-11-14 09:45:27,683 [DEBUG] Moving from ref0046415.11e5 to ref0046415.11e3 (p=1) 2017-11-14 09:45:27,683 [DEBUG] contig 2017-11-14 09:45:27,683 [DEBUG] who? ref0046415.11e5 ref0046415.11e3 2017-11-14 09:45:27,683 [DEBUG] Grabbing contig between nodes ref0046415.11e5 & ref0046415.11e3 - [trim 0, 0] 2017-11-14 09:45:27,683 [DEBUG] contig 10277 to 16164 2017-11-14 09:45:27,683 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,683 [DEBUG] Moving from ref0046415.11e3 to ref0046415.12e5 (p=1) 2017-11-14 09:45:27,683 [DEBUG] unimproved gap 2017-11-14 09:45:27,683 [DEBUG] Moving from ref0046415.12e5 to ref0046415.12e3 (p=1) 2017-11-14 09:45:27,683 [DEBUG] contig 2017-11-14 09:45:27,683 [DEBUG] who? ref0046415.12e5 ref0046415.12e3 2017-11-14 09:45:27,684 [DEBUG] Grabbing contig between nodes ref0046415.12e5 & ref0046415.12e3 - [trim 0, 0] 2017-11-14 09:45:27,684 [DEBUG] contig 16231 to 19411 2017-11-14 09:45:27,684 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,684 [DEBUG] Moving from ref0046415.12e3 to ref0046415.13e5 (p=1) 2017-11-14 09:45:27,684 [DEBUG] unimproved gap 2017-11-14 09:45:27,684 [DEBUG] Moving from ref0046415.13e5 to ref0046415.13e3 (p=1) 2017-11-14 09:45:27,684 [DEBUG] contig 2017-11-14 09:45:27,684 [DEBUG] who? ref0046415.13e5 ref0046415.13e3 2017-11-14 09:45:27,684 [DEBUG] Grabbing contig between nodes ref0046415.13e5 & ref0046415.13e3 - [trim 0, 0] 2017-11-14 09:45:27,684 [DEBUG] contig 19481 to 19946 2017-11-14 09:45:27,684 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,684 [DEBUG] Moving from ref0046415.13e3 to ref0046415.14e5 (p=1) 2017-11-14 09:45:27,684 [DEBUG] unimproved gap 2017-11-14 09:45:27,685 [DEBUG] Moving from ref0046415.14e5 to ref0046415.14e3 (p=1) 2017-11-14 09:45:27,685 [DEBUG] contig 2017-11-14 09:45:27,685 [DEBUG] who? ref0046415.14e5 ref0046415.14e3 2017-11-14 09:45:27,685 [DEBUG] Grabbing contig between nodes ref0046415.14e5 & ref0046415.14e3 - [trim 0, 0] 2017-11-14 09:45:27,685 [DEBUG] contig 20257 to 21799 2017-11-14 09:45:27,685 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,685 [DEBUG] Moving from ref0046415.14e3 to ref0046415.15e5 (p=1) 2017-11-14 09:45:27,685 [DEBUG] unimproved gap 2017-11-14 09:45:27,685 [DEBUG] Moving from ref0046415.15e5 to ref0046415.15e3 (p=1) 2017-11-14 09:45:27,685 [DEBUG] contig 2017-11-14 09:45:27,685 [DEBUG] who? ref0046415.15e5 ref0046415.15e3 2017-11-14 09:45:27,685 [DEBUG] Grabbing contig between nodes ref0046415.15e5 & ref0046415.15e3 - [trim 0, 0] 2017-11-14 09:45:27,685 [DEBUG] contig 22219 to 22301 2017-11-14 09:45:27,685 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,686 [DEBUG] Moving from ref0046415.15e3 to ref0046415.16e5 (p=1) 2017-11-14 09:45:27,686 [DEBUG] unimproved gap 2017-11-14 09:45:27,686 [DEBUG] Moving from ref0046415.16e5 to ref0046415.16e3 (p=1) 2017-11-14 09:45:27,686 [DEBUG] contig 2017-11-14 09:45:27,686 [DEBUG] who? ref0046415.16e5 ref0046415.16e3 2017-11-14 09:45:27,686 [DEBUG] Grabbing contig between nodes ref0046415.16e5 & ref0046415.16e3 - [trim 0, 0] 2017-11-14 09:45:27,686 [DEBUG] contig 22515 to 22843 2017-11-14 09:45:27,686 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,686 [DEBUG] Moving from ref0046415.16e3 to ref0046415.17e5 (p=1) 2017-11-14 09:45:27,686 [DEBUG] unimproved gap 2017-11-14 09:45:27,686 [DEBUG] Moving from ref0046415.17e5 to ref0046415.17e3 (p=1) 2017-11-14 09:45:27,686 [DEBUG] contig 2017-11-14 09:45:27,686 [DEBUG] who? ref0046415.17e5 ref0046415.17e3 2017-11-14 09:45:27,686 [DEBUG] Grabbing contig between nodes ref0046415.17e5 & ref0046415.17e3 - [trim 0, 0] 2017-11-14 09:45:27,687 [DEBUG] contig 22936 to 24595 2017-11-14 09:45:27,687 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,687 [DEBUG] Moving from ref0046415.17e3 to ref0046415.18e5 (p=1) 2017-11-14 09:45:27,687 [DEBUG] unimproved gap 2017-11-14 09:45:27,687 [DEBUG] Moving from ref0046415.18e5 to ref0046415.18e3 (p=1) 2017-11-14 09:45:27,687 [DEBUG] contig 2017-11-14 09:45:27,687 [DEBUG] who? ref0046415.18e5 ref0046415.18e3 2017-11-14 09:45:27,687 [DEBUG] Grabbing contig between nodes ref0046415.18e5 & ref0046415.18e3 - [trim 0, 0] 2017-11-14 09:45:27,687 [DEBUG] contig 24747 to 32196 2017-11-14 09:45:27,687 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,687 [DEBUG] Moving from ref0046415.18e3 to ref0046415.19e5 (p=1) 2017-11-14 09:45:27,687 [DEBUG] unimproved gap 2017-11-14 09:45:27,687 [DEBUG] Moving from ref0046415.19e5 to ref0046415.19e3 (p=1) 2017-11-14 09:45:27,688 [DEBUG] contig 2017-11-14 09:45:27,688 [DEBUG] who? ref0046415.19e5 ref0046415.19e3 2017-11-14 09:45:27,688 [DEBUG] Grabbing contig between nodes ref0046415.19e5 & ref0046415.19e3 - [trim 0, 0] 2017-11-14 09:45:27,688 [DEBUG] contig 32684 to 35559 2017-11-14 09:45:27,688 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,688 [DEBUG] Moving from ref0046415.19e3 to ref0046415.20e5 (p=1) 2017-11-14 09:45:27,688 [DEBUG] unimproved gap 2017-11-14 09:45:27,688 [DEBUG] Moving from ref0046415.20e5 to ref0046415e3 (p=1) 2017-11-14 09:45:27,688 [DEBUG] contig 2017-11-14 09:45:27,688 [DEBUG] who? ref0046415.20e5 ref0046415e3 2017-11-14 09:45:27,688 [DEBUG] Grabbing contig between nodes ref0046415.20e5 & ref0046415e3 - [trim 0, 0] 2017-11-14 09:45:27,688 [DEBUG] contig 35964 to 37672 2017-11-14 09:45:27,688 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,689 [DEBUG] Contig 22 2017-11-14 09:45:27,691 [DEBUG] Moving from ref0206467e3 to ref0206467.20e5 (p=1) 2017-11-14 09:45:27,691 [DEBUG] contig 2017-11-14 09:45:27,691 [DEBUG] who? ref0206467.20e5 ref0206467e3 2017-11-14 09:45:27,691 [DEBUG] Grabbing contig between nodes ref0206467.20e5 & ref0206467e3 - [trim 0, 0] 2017-11-14 09:45:27,692 [DEBUG] contig 12028 to 12435 2017-11-14 09:45:27,692 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,692 [DEBUG] Moving from ref0206467.20e5 to ref0206467.19e3 (p=1) 2017-11-14 09:45:27,692 [DEBUG] unimproved gap 2017-11-14 09:45:27,692 [DEBUG] Moving from ref0206467.19e3 to ref0206467.19e5 (p=1) 2017-11-14 09:45:27,692 [DEBUG] contig 2017-11-14 09:45:27,692 [DEBUG] who? ref0206467.19e5 ref0206467.19e3 2017-11-14 09:45:27,692 [DEBUG] Grabbing contig between nodes ref0206467.19e5 & ref0206467.19e3 - [trim 0, 0] 2017-11-14 09:45:27,692 [DEBUG] contig 11449 to 11779 2017-11-14 09:45:27,692 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,692 [DEBUG] Moving from ref0206467.19e5 to ref0206467.18e3 (p=1) 2017-11-14 09:45:27,692 [DEBUG] unimproved gap 2017-11-14 09:45:27,692 [DEBUG] Moving from ref0206467.18e3 to ref0206467.18e5 (p=1) 2017-11-14 09:45:27,693 [DEBUG] contig 2017-11-14 09:45:27,693 [DEBUG] who? ref0206467.18e5 ref0206467.18e3 2017-11-14 09:45:27,693 [DEBUG] Grabbing contig between nodes ref0206467.18e5 & ref0206467.18e3 - [trim 0, 0] 2017-11-14 09:45:27,693 [DEBUG] contig 10296 to 11204 2017-11-14 09:45:27,693 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,693 [DEBUG] Moving from ref0206467.18e5 to ref0206467.17e3 (p=1) 2017-11-14 09:45:27,693 [DEBUG] unimproved gap 2017-11-14 09:45:27,693 [DEBUG] Moving from ref0206467.17e3 to ref0206467.17e5 (p=1) 2017-11-14 09:45:27,693 [DEBUG] contig 2017-11-14 09:45:27,693 [DEBUG] who? ref0206467.17e5 ref0206467.17e3 2017-11-14 09:45:27,693 [DEBUG] Grabbing contig between nodes ref0206467.17e5 & ref0206467.17e3 - [trim 0, 0] 2017-11-14 09:45:27,693 [DEBUG] contig 9615 to 10056 2017-11-14 09:45:27,693 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,694 [DEBUG] Moving from ref0206467.17e5 to ref0206467.16e3 (p=1) 2017-11-14 09:45:27,694 [DEBUG] unimproved gap 2017-11-14 09:45:27,694 [DEBUG] Moving from ref0206467.16e3 to ref0206467.16e5 (p=1) 2017-11-14 09:45:27,694 [DEBUG] contig 2017-11-14 09:45:27,694 [DEBUG] who? ref0206467.16e5 ref0206467.16e3 2017-11-14 09:45:27,694 [DEBUG] Grabbing contig between nodes ref0206467.16e5 & ref0206467.16e3 - [trim 0, 0] 2017-11-14 09:45:27,694 [DEBUG] contig 9142 to 9245 2017-11-14 09:45:27,694 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,694 [DEBUG] Moving from ref0206467.16e5 to ref0206467.15e3 (p=1) 2017-11-14 09:45:27,694 [DEBUG] unimproved gap 2017-11-14 09:45:27,694 [DEBUG] Moving from ref0206467.15e3 to ref0206467.15e5 (p=1) 2017-11-14 09:45:27,694 [DEBUG] contig 2017-11-14 09:45:27,694 [DEBUG] who? ref0206467.15e5 ref0206467.15e3 2017-11-14 09:45:27,694 [DEBUG] Grabbing contig between nodes ref0206467.15e5 & ref0206467.15e3 - [trim 0, 0] 2017-11-14 09:45:27,695 [DEBUG] contig 8074 to 8778 2017-11-14 09:45:27,695 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,695 [DEBUG] Moving from ref0206467.15e5 to ref0206467.14e3 (p=1) 2017-11-14 09:45:27,695 [DEBUG] unimproved gap 2017-11-14 09:45:27,695 [DEBUG] Moving from ref0206467.14e3 to ref0206467.14e5 (p=1) 2017-11-14 09:45:27,695 [DEBUG] contig 2017-11-14 09:45:27,695 [DEBUG] who? ref0206467.14e5 ref0206467.14e3 2017-11-14 09:45:27,695 [DEBUG] Grabbing contig between nodes ref0206467.14e5 & ref0206467.14e3 - [trim 0, 0] 2017-11-14 09:45:27,695 [DEBUG] contig 7636 to 7915 2017-11-14 09:45:27,695 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,695 [DEBUG] Moving from ref0206467.14e5 to ref0206467.13e3 (p=1) 2017-11-14 09:45:27,695 [DEBUG] unimproved gap 2017-11-14 09:45:27,695 [DEBUG] Moving from ref0206467.13e3 to ref0206467.13e5 (p=1) 2017-11-14 09:45:27,696 [DEBUG] contig 2017-11-14 09:45:27,696 [DEBUG] who? ref0206467.13e5 ref0206467.13e3 2017-11-14 09:45:27,696 [DEBUG] Grabbing contig between nodes ref0206467.13e5 & ref0206467.13e3 - [trim 0, 0] 2017-11-14 09:45:27,696 [DEBUG] contig 7135 to 7362 2017-11-14 09:45:27,696 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,696 [DEBUG] Moving from ref0206467.13e5 to ref0206467.12e3 (p=1) 2017-11-14 09:45:27,696 [DEBUG] unimproved gap 2017-11-14 09:45:27,696 [DEBUG] Moving from ref0206467.12e3 to ref0206467.12e5 (p=1) 2017-11-14 09:45:27,696 [DEBUG] contig 2017-11-14 09:45:27,696 [DEBUG] who? ref0206467.12e5 ref0206467.12e3 2017-11-14 09:45:27,696 [DEBUG] Grabbing contig between nodes ref0206467.12e5 & ref0206467.12e3 - [trim 0, 0] 2017-11-14 09:45:27,696 [DEBUG] contig 6649 to 6683 2017-11-14 09:45:27,696 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,697 [DEBUG] Moving from ref0206467.12e5 to ref0206467.11e3 (p=1) 2017-11-14 09:45:27,697 [DEBUG] unimproved gap 2017-11-14 09:45:27,697 [DEBUG] Moving from ref0206467.11e3 to ref0206467.11e5 (p=1) 2017-11-14 09:45:27,697 [DEBUG] contig 2017-11-14 09:45:27,697 [DEBUG] who? ref0206467.11e5 ref0206467.11e3 2017-11-14 09:45:27,697 [DEBUG] Grabbing contig between nodes ref0206467.11e5 & ref0206467.11e3 - [trim 0, 0] 2017-11-14 09:45:27,697 [DEBUG] contig 5796 to 6083 2017-11-14 09:45:27,697 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,697 [DEBUG] Moving from ref0206467.11e5 to ref0206467.10e3 (p=1) 2017-11-14 09:45:27,697 [DEBUG] unimproved gap 2017-11-14 09:45:27,697 [DEBUG] Moving from ref0206467.10e3 to ref0206467.10e5 (p=1) 2017-11-14 09:45:27,697 [DEBUG] contig 2017-11-14 09:45:27,697 [DEBUG] who? ref0206467.10e5 ref0206467.10e3 2017-11-14 09:45:27,698 [DEBUG] Grabbing contig between nodes ref0206467.10e5 & ref0206467.10e3 - [trim 0, 0] 2017-11-14 09:45:27,698 [DEBUG] contig 4438 to 5457 2017-11-14 09:45:27,698 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,698 [DEBUG] Moving from ref0206467.10e5 to ref0206467.9e3 (p=1) 2017-11-14 09:45:27,698 [DEBUG] unimproved gap 2017-11-14 09:45:27,698 [DEBUG] Moving from ref0206467.9e3 to ref0206467.9e5 (p=1) 2017-11-14 09:45:27,698 [DEBUG] contig 2017-11-14 09:45:27,698 [DEBUG] who? ref0206467.9e5 ref0206467.9e3 2017-11-14 09:45:27,698 [DEBUG] Grabbing contig between nodes ref0206467.9e5 & ref0206467.9e3 - [trim 0, 0] 2017-11-14 09:45:27,698 [DEBUG] contig 4318 to 4401 2017-11-14 09:45:27,698 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,698 [DEBUG] Moving from ref0206467.9e5 to ref0206467.8e3 (p=1) 2017-11-14 09:45:27,698 [DEBUG] unimproved gap 2017-11-14 09:45:27,699 [DEBUG] Moving from ref0206467.8e3 to ref0206467.8e5 (p=1) 2017-11-14 09:45:27,699 [DEBUG] contig 2017-11-14 09:45:27,699 [DEBUG] who? ref0206467.8e5 ref0206467.8e3 2017-11-14 09:45:27,699 [DEBUG] Grabbing contig between nodes ref0206467.8e5 & ref0206467.8e3 - [trim 0, 0] 2017-11-14 09:45:27,699 [DEBUG] contig 2677 to 3981 2017-11-14 09:45:27,699 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,699 [DEBUG] Moving from ref0206467.8e5 to ref0206467.7e3 (p=1) 2017-11-14 09:45:27,699 [DEBUG] unimproved gap 2017-11-14 09:45:27,699 [DEBUG] Moving from ref0206467.7e3 to ref0206467.7e5 (p=1) 2017-11-14 09:45:27,699 [DEBUG] contig 2017-11-14 09:45:27,699 [DEBUG] who? ref0206467.7e5 ref0206467.7e3 2017-11-14 09:45:27,699 [DEBUG] Grabbing contig between nodes ref0206467.7e5 & ref0206467.7e3 - [trim 0, 0] 2017-11-14 09:45:27,699 [DEBUG] contig 2366 to 2459 2017-11-14 09:45:27,700 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,700 [DEBUG] Moving from ref0206467.7e5 to ref0206467.6e3 (p=1) 2017-11-14 09:45:27,700 [DEBUG] unimproved gap 2017-11-14 09:45:27,700 [DEBUG] Moving from ref0206467.6e3 to ref0206467.6e5 (p=1) 2017-11-14 09:45:27,700 [DEBUG] contig 2017-11-14 09:45:27,700 [DEBUG] who? ref0206467.6e5 ref0206467.6e3 2017-11-14 09:45:27,700 [DEBUG] Grabbing contig between nodes ref0206467.6e5 & ref0206467.6e3 - [trim 0, 0] 2017-11-14 09:45:27,700 [DEBUG] contig 2004 to 2039 2017-11-14 09:45:27,700 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,700 [DEBUG] Moving from ref0206467.6e5 to ref0206467.5e3 (p=1) 2017-11-14 09:45:27,700 [DEBUG] unimproved gap 2017-11-14 09:45:27,700 [DEBUG] Moving from ref0206467.5e3 to ref0206467.5e5 (p=1) 2017-11-14 09:45:27,701 [DEBUG] contig 2017-11-14 09:45:27,701 [DEBUG] who? ref0206467.5e5 ref0206467.5e3 2017-11-14 09:45:27,701 [DEBUG] Grabbing contig between nodes ref0206467.5e5 & ref0206467.5e3 - [trim 0, 0] 2017-11-14 09:45:27,701 [DEBUG] contig 1469 to 1849 2017-11-14 09:45:27,701 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,701 [DEBUG] Moving from ref0206467.5e5 to ref0206467.4e3 (p=1) 2017-11-14 09:45:27,701 [DEBUG] unimproved gap 2017-11-14 09:45:27,701 [DEBUG] Moving from ref0206467.4e3 to ref0206467.4e5 (p=1) 2017-11-14 09:45:27,701 [DEBUG] contig 2017-11-14 09:45:27,701 [DEBUG] who? ref0206467.4e5 ref0206467.4e3 2017-11-14 09:45:27,701 [DEBUG] Grabbing contig between nodes ref0206467.4e5 & ref0206467.4e3 - [trim 0, 0] 2017-11-14 09:45:27,701 [DEBUG] contig 1119 to 1153 2017-11-14 09:45:27,701 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,702 [DEBUG] Moving from ref0206467.4e5 to ref0206467.3e3 (p=1) 2017-11-14 09:45:27,702 [DEBUG] unimproved gap 2017-11-14 09:45:27,702 [DEBUG] Moving from ref0206467.3e3 to ref0206467.3e5 (p=1) 2017-11-14 09:45:27,702 [DEBUG] contig 2017-11-14 09:45:27,702 [DEBUG] who? ref0206467.3e5 ref0206467.3e3 2017-11-14 09:45:27,702 [DEBUG] Grabbing contig between nodes ref0206467.3e5 & ref0206467.3e3 - [trim 0, 0] 2017-11-14 09:45:27,702 [DEBUG] contig 655 to 864 2017-11-14 09:45:27,702 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,702 [DEBUG] Moving from ref0206467.3e5 to ref0206467.2e3 (p=1) 2017-11-14 09:45:27,702 [DEBUG] unimproved gap 2017-11-14 09:45:27,702 [DEBUG] Moving from ref0206467.2e3 to ref0206467.2e5 (p=1) 2017-11-14 09:45:27,702 [DEBUG] contig 2017-11-14 09:45:27,702 [DEBUG] who? ref0206467.2e5 ref0206467.2e3 2017-11-14 09:45:27,703 [DEBUG] Grabbing contig between nodes ref0206467.2e5 & ref0206467.2e3 - [trim 0, 0] 2017-11-14 09:45:27,703 [DEBUG] contig 501 to 593 2017-11-14 09:45:27,703 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,703 [DEBUG] Moving from ref0206467.2e5 to ref0206467.1e3 (p=1) 2017-11-14 09:45:27,703 [DEBUG] unimproved gap 2017-11-14 09:45:27,703 [DEBUG] Moving from ref0206467.1e3 to ref0206467.1e5 (p=1) 2017-11-14 09:45:27,703 [DEBUG] contig 2017-11-14 09:45:27,703 [DEBUG] who? ref0206467.1e5 ref0206467.1e3 2017-11-14 09:45:27,703 [DEBUG] Grabbing contig between nodes ref0206467.1e5 & ref0206467.1e3 - [trim 0, 0] 2017-11-14 09:45:27,703 [DEBUG] contig 372 to 423 2017-11-14 09:45:27,703 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,703 [DEBUG] Moving from ref0206467.1e5 to ref0206467.0e3 (p=1) 2017-11-14 09:45:27,703 [DEBUG] unimproved gap 2017-11-14 09:45:27,704 [DEBUG] Moving from ref0206467.0e3 to ref0206467e5 (p=1) 2017-11-14 09:45:27,704 [DEBUG] contig 2017-11-14 09:45:27,704 [DEBUG] who? ref0206467e5 ref0206467.0e3 2017-11-14 09:45:27,704 [DEBUG] Grabbing contig between nodes ref0206467e5 & ref0206467.0e3 - [trim 0, 0] 2017-11-14 09:45:27,704 [DEBUG] contig 0 to 194 2017-11-14 09:45:27,704 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,704 [DEBUG] FirstFlipping 22 2017-11-14 09:45:27,704 [DEBUG] Contig 23 2017-11-14 09:45:27,707 [DEBUG] Moving from ref0514055e3 to ref0514055.20e5 (p=1) 2017-11-14 09:45:27,707 [DEBUG] contig 2017-11-14 09:45:27,707 [DEBUG] who? ref0514055.20e5 ref0514055e3 2017-11-14 09:45:27,707 [DEBUG] Grabbing contig between nodes ref0514055.20e5 & ref0514055e3 - [trim 0, 0] 2017-11-14 09:45:27,707 [DEBUG] contig 30220 to 30423 2017-11-14 09:45:27,707 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,707 [DEBUG] Moving from ref0514055.20e5 to ref0514055.19e3 (p=1) 2017-11-14 09:45:27,707 [DEBUG] unimproved gap 2017-11-14 09:45:27,708 [DEBUG] Moving from ref0514055.19e3 to ref0514055.19e5 (p=1) 2017-11-14 09:45:27,708 [DEBUG] contig 2017-11-14 09:45:27,708 [DEBUG] who? ref0514055.19e5 ref0514055.19e3 2017-11-14 09:45:27,708 [DEBUG] Grabbing contig between nodes ref0514055.19e5 & ref0514055.19e3 - [trim 0, 0] 2017-11-14 09:45:27,708 [DEBUG] contig 28746 to 30103 2017-11-14 09:45:27,708 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,708 [DEBUG] Moving from ref0514055.19e5 to ref0514055.18e3 (p=1) 2017-11-14 09:45:27,708 [DEBUG] unimproved gap 2017-11-14 09:45:27,708 [DEBUG] Moving from ref0514055.18e3 to ref0514055.18e5 (p=1) 2017-11-14 09:45:27,708 [DEBUG] contig 2017-11-14 09:45:27,708 [DEBUG] who? ref0514055.18e5 ref0514055.18e3 2017-11-14 09:45:27,708 [DEBUG] Grabbing contig between nodes ref0514055.18e5 & ref0514055.18e3 - [trim 0, 0] 2017-11-14 09:45:27,709 [DEBUG] contig 28603 to 28649 2017-11-14 09:45:27,709 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,709 [DEBUG] Moving from ref0514055.18e5 to ref0514055.17e3 (p=1) 2017-11-14 09:45:27,709 [DEBUG] unimproved gap 2017-11-14 09:45:27,709 [DEBUG] Moving from ref0514055.17e3 to ref0514055.17e5 (p=1) 2017-11-14 09:45:27,709 [DEBUG] contig 2017-11-14 09:45:27,709 [DEBUG] who? ref0514055.17e5 ref0514055.17e3 2017-11-14 09:45:27,709 [DEBUG] Grabbing contig between nodes ref0514055.17e5 & ref0514055.17e3 - [trim 0, 0] 2017-11-14 09:45:27,709 [DEBUG] contig 22253 to 27957 2017-11-14 09:45:27,709 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,709 [DEBUG] Moving from ref0514055.17e5 to ref0514055.16e3 (p=1) 2017-11-14 09:45:27,709 [DEBUG] unimproved gap 2017-11-14 09:45:27,709 [DEBUG] Moving from ref0514055.16e3 to ref0514055.16e5 (p=1) 2017-11-14 09:45:27,710 [DEBUG] contig 2017-11-14 09:45:27,710 [DEBUG] who? ref0514055.16e5 ref0514055.16e3 2017-11-14 09:45:27,710 [DEBUG] Grabbing contig between nodes ref0514055.16e5 & ref0514055.16e3 - [trim 0, 0] 2017-11-14 09:45:27,710 [DEBUG] contig 20713 to 21948 2017-11-14 09:45:27,710 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,710 [DEBUG] Moving from ref0514055.16e5 to ref0514055.15e3 (p=1) 2017-11-14 09:45:27,710 [DEBUG] unimproved gap 2017-11-14 09:45:27,710 [DEBUG] Moving from ref0514055.15e3 to ref0514055.15e5 (p=1) 2017-11-14 09:45:27,710 [DEBUG] contig 2017-11-14 09:45:27,710 [DEBUG] who? ref0514055.15e5 ref0514055.15e3 2017-11-14 09:45:27,710 [DEBUG] Grabbing contig between nodes ref0514055.15e5 & ref0514055.15e3 - [trim 0, 0] 2017-11-14 09:45:27,710 [DEBUG] contig 19716 to 20207 2017-11-14 09:45:27,710 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,711 [DEBUG] Moving from ref0514055.15e5 to ref0514055.14e3 (p=1) 2017-11-14 09:45:27,711 [DEBUG] unimproved gap 2017-11-14 09:45:27,711 [DEBUG] Moving from ref0514055.14e3 to ref0514055.14e5 (p=1) 2017-11-14 09:45:27,711 [DEBUG] contig 2017-11-14 09:45:27,711 [DEBUG] who? ref0514055.14e5 ref0514055.14e3 2017-11-14 09:45:27,711 [DEBUG] Grabbing contig between nodes ref0514055.14e5 & ref0514055.14e3 - [trim 0, 0] 2017-11-14 09:45:27,711 [DEBUG] contig 18544 to 19514 2017-11-14 09:45:27,711 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,711 [DEBUG] Moving from ref0514055.14e5 to ref0514055.13e3 (p=1) 2017-11-14 09:45:27,711 [DEBUG] unimproved gap 2017-11-14 09:45:27,711 [DEBUG] Moving from ref0514055.13e3 to ref0514055.13e5 (p=1) 2017-11-14 09:45:27,711 [DEBUG] contig 2017-11-14 09:45:27,711 [DEBUG] who? ref0514055.13e5 ref0514055.13e3 2017-11-14 09:45:27,712 [DEBUG] Grabbing contig between nodes ref0514055.13e5 & ref0514055.13e3 - [trim 0, 0] 2017-11-14 09:45:27,712 [DEBUG] contig 11399 to 18166 2017-11-14 09:45:27,712 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,712 [DEBUG] Moving from ref0514055.13e5 to ref0514055.12e3 (p=1) 2017-11-14 09:45:27,712 [DEBUG] unimproved gap 2017-11-14 09:45:27,712 [DEBUG] Moving from ref0514055.12e3 to ref0514055.12e5 (p=1) 2017-11-14 09:45:27,712 [DEBUG] contig 2017-11-14 09:45:27,712 [DEBUG] who? ref0514055.12e5 ref0514055.12e3 2017-11-14 09:45:27,712 [DEBUG] Grabbing contig between nodes ref0514055.12e5 & ref0514055.12e3 - [trim 0, 0] 2017-11-14 09:45:27,712 [DEBUG] contig 10227 to 10892 2017-11-14 09:45:27,712 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,712 [DEBUG] Moving from ref0514055.12e5 to ref0514055.11e3 (p=1) 2017-11-14 09:45:27,713 [DEBUG] unimproved gap 2017-11-14 09:45:27,713 [DEBUG] Moving from ref0514055.11e3 to ref0514055.11e5 (p=1) 2017-11-14 09:45:27,713 [DEBUG] contig 2017-11-14 09:45:27,713 [DEBUG] who? ref0514055.11e5 ref0514055.11e3 2017-11-14 09:45:27,713 [DEBUG] Grabbing contig between nodes ref0514055.11e5 & ref0514055.11e3 - [trim 0, 0] 2017-11-14 09:45:27,713 [DEBUG] contig 7321 to 10048 2017-11-14 09:45:27,713 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,713 [DEBUG] Moving from ref0514055.11e5 to ref0514055.10e3 (p=1) 2017-11-14 09:45:27,713 [DEBUG] unimproved gap 2017-11-14 09:45:27,713 [DEBUG] Moving from ref0514055.10e3 to ref0514055.10e5 (p=1) 2017-11-14 09:45:27,713 [DEBUG] contig 2017-11-14 09:45:27,713 [DEBUG] who? ref0514055.10e5 ref0514055.10e3 2017-11-14 09:45:27,713 [DEBUG] Grabbing contig between nodes ref0514055.10e5 & ref0514055.10e3 - [trim 0, 0] 2017-11-14 09:45:27,714 [DEBUG] contig 6205 to 7174 2017-11-14 09:45:27,714 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,714 [DEBUG] Moving from ref0514055.10e5 to ref0514055.9e3 (p=1) 2017-11-14 09:45:27,714 [DEBUG] unimproved gap 2017-11-14 09:45:27,714 [DEBUG] Moving from ref0514055.9e3 to ref0514055.9e5 (p=1) 2017-11-14 09:45:27,714 [DEBUG] contig 2017-11-14 09:45:27,714 [DEBUG] who? ref0514055.9e5 ref0514055.9e3 2017-11-14 09:45:27,714 [DEBUG] Grabbing contig between nodes ref0514055.9e5 & ref0514055.9e3 - [trim 0, 0] 2017-11-14 09:45:27,714 [DEBUG] contig 5413 to 5706 2017-11-14 09:45:27,714 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,714 [DEBUG] Moving from ref0514055.9e5 to ref0514055.8e3 (p=1) 2017-11-14 09:45:27,714 [DEBUG] unimproved gap 2017-11-14 09:45:27,714 [DEBUG] Moving from ref0514055.8e3 to ref0514055.8e5 (p=1) 2017-11-14 09:45:27,715 [DEBUG] contig 2017-11-14 09:45:27,715 [DEBUG] who? ref0514055.8e5 ref0514055.8e3 2017-11-14 09:45:27,715 [DEBUG] Grabbing contig between nodes ref0514055.8e5 & ref0514055.8e3 - [trim 0, 0] 2017-11-14 09:45:27,715 [DEBUG] contig 4732 to 5090 2017-11-14 09:45:27,715 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,715 [DEBUG] Moving from ref0514055.8e5 to ref0514055.7e3 (p=1) 2017-11-14 09:45:27,715 [DEBUG] unimproved gap 2017-11-14 09:45:27,715 [DEBUG] Moving from ref0514055.7e3 to ref0514055.7e5 (p=1) 2017-11-14 09:45:27,715 [DEBUG] contig 2017-11-14 09:45:27,715 [DEBUG] who? ref0514055.7e5 ref0514055.7e3 2017-11-14 09:45:27,715 [DEBUG] Grabbing contig between nodes ref0514055.7e5 & ref0514055.7e3 - [trim 0, 0] 2017-11-14 09:45:27,715 [DEBUG] contig 4070 to 4612 2017-11-14 09:45:27,715 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,716 [DEBUG] Moving from ref0514055.7e5 to ref0514055.6e3 (p=1) 2017-11-14 09:45:27,716 [DEBUG] unimproved gap 2017-11-14 09:45:27,716 [DEBUG] Moving from ref0514055.6e3 to ref0514055.6e5 (p=1) 2017-11-14 09:45:27,716 [DEBUG] contig 2017-11-14 09:45:27,716 [DEBUG] who? ref0514055.6e5 ref0514055.6e3 2017-11-14 09:45:27,716 [DEBUG] Grabbing contig between nodes ref0514055.6e5 & ref0514055.6e3 - [trim 0, 0] 2017-11-14 09:45:27,716 [DEBUG] contig 3844 to 3899 2017-11-14 09:45:27,716 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,716 [DEBUG] Moving from ref0514055.6e5 to ref0514055.5e3 (p=1) 2017-11-14 09:45:27,716 [DEBUG] unimproved gap 2017-11-14 09:45:27,716 [DEBUG] Moving from ref0514055.5e3 to ref0514055.5e5 (p=1) 2017-11-14 09:45:27,716 [DEBUG] contig 2017-11-14 09:45:27,716 [DEBUG] who? ref0514055.5e5 ref0514055.5e3 2017-11-14 09:45:27,717 [DEBUG] Grabbing contig between nodes ref0514055.5e5 & ref0514055.5e3 - [trim 0, 0] 2017-11-14 09:45:27,717 [DEBUG] contig 3045 to 3701 2017-11-14 09:45:27,717 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,717 [DEBUG] Moving from ref0514055.5e5 to ref0514055.4e3 (p=1) 2017-11-14 09:45:27,717 [DEBUG] unimproved gap 2017-11-14 09:45:27,717 [DEBUG] Moving from ref0514055.4e3 to ref0514055.4e5 (p=1) 2017-11-14 09:45:27,717 [DEBUG] contig 2017-11-14 09:45:27,717 [DEBUG] who? ref0514055.4e5 ref0514055.4e3 2017-11-14 09:45:27,717 [DEBUG] Grabbing contig between nodes ref0514055.4e5 & ref0514055.4e3 - [trim 0, 0] 2017-11-14 09:45:27,717 [DEBUG] contig 2034 to 2637 2017-11-14 09:45:27,717 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,717 [DEBUG] Moving from ref0514055.4e5 to ref0514055.3e3 (p=1) 2017-11-14 09:45:27,717 [DEBUG] unimproved gap 2017-11-14 09:45:27,718 [DEBUG] Moving from ref0514055.3e3 to ref0514055.3e5 (p=1) 2017-11-14 09:45:27,718 [DEBUG] contig 2017-11-14 09:45:27,718 [DEBUG] who? ref0514055.3e5 ref0514055.3e3 2017-11-14 09:45:27,718 [DEBUG] Grabbing contig between nodes ref0514055.3e5 & ref0514055.3e3 - [trim 0, 0] 2017-11-14 09:45:27,718 [DEBUG] contig 1360 to 1624 2017-11-14 09:45:27,718 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,718 [DEBUG] Moving from ref0514055.3e5 to ref0514055.2e3 (p=1) 2017-11-14 09:45:27,718 [DEBUG] unimproved gap 2017-11-14 09:45:27,718 [DEBUG] Moving from ref0514055.2e3 to ref0514055.2e5 (p=1) 2017-11-14 09:45:27,718 [DEBUG] contig 2017-11-14 09:45:27,718 [DEBUG] who? ref0514055.2e5 ref0514055.2e3 2017-11-14 09:45:27,718 [DEBUG] Grabbing contig between nodes ref0514055.2e5 & ref0514055.2e3 - [trim 0, 0] 2017-11-14 09:45:27,718 [DEBUG] contig 1255 to 1296 2017-11-14 09:45:27,719 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,719 [DEBUG] Moving from ref0514055.2e5 to ref0514055.1e3 (p=1) 2017-11-14 09:45:27,719 [DEBUG] unimproved gap 2017-11-14 09:45:27,719 [DEBUG] Moving from ref0514055.1e3 to ref0514055.1e5 (p=1) 2017-11-14 09:45:27,719 [DEBUG] contig 2017-11-14 09:45:27,719 [DEBUG] who? ref0514055.1e5 ref0514055.1e3 2017-11-14 09:45:27,719 [DEBUG] Grabbing contig between nodes ref0514055.1e5 & ref0514055.1e3 - [trim 0, 0] 2017-11-14 09:45:27,719 [DEBUG] contig 374 to 1187 2017-11-14 09:45:27,719 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,719 [DEBUG] Moving from ref0514055.1e5 to ref0514055.0e3 (p=1) 2017-11-14 09:45:27,719 [DEBUG] unimproved gap 2017-11-14 09:45:27,719 [DEBUG] Moving from ref0514055.0e3 to ref0514055e5 (p=1) 2017-11-14 09:45:27,719 [DEBUG] contig 2017-11-14 09:45:27,720 [DEBUG] who? ref0514055e5 ref0514055.0e3 2017-11-14 09:45:27,720 [DEBUG] Grabbing contig between nodes ref0514055e5 & ref0514055.0e3 - [trim 0, 0] 2017-11-14 09:45:27,720 [DEBUG] contig 0 to 325 2017-11-14 09:45:27,720 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,720 [DEBUG] FirstFlipping 23 2017-11-14 09:45:27,720 [DEBUG] Contig 24 2017-11-14 09:45:27,723 [DEBUG] Moving from ref0704524e5 to ref0704524.0e3 (p=1) 2017-11-14 09:45:27,723 [DEBUG] contig 2017-11-14 09:45:27,723 [DEBUG] who? ref0704524e5 ref0704524.0e3 2017-11-14 09:45:27,723 [DEBUG] Grabbing contig between nodes ref0704524e5 & ref0704524.0e3 - [trim 0, 0] 2017-11-14 09:45:27,723 [DEBUG] contig 0 to 251 2017-11-14 09:45:27,723 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,723 [DEBUG] Moving from ref0704524.0e3 to ref0704524.1e5 (p=1) 2017-11-14 09:45:27,723 [DEBUG] unimproved gap 2017-11-14 09:45:27,724 [DEBUG] Moving from ref0704524.1e5 to ref0704524.1e3 (p=1) 2017-11-14 09:45:27,724 [DEBUG] contig 2017-11-14 09:45:27,724 [DEBUG] who? ref0704524.1e5 ref0704524.1e3 2017-11-14 09:45:27,724 [DEBUG] Grabbing contig between nodes ref0704524.1e5 & ref0704524.1e3 - [trim 0, 0] 2017-11-14 09:45:27,724 [DEBUG] contig 634 to 2682 2017-11-14 09:45:27,724 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,724 [DEBUG] Moving from ref0704524.1e3 to ref0704524.2e5 (p=1) 2017-11-14 09:45:27,724 [DEBUG] unimproved gap 2017-11-14 09:45:27,724 [DEBUG] Moving from ref0704524.2e5 to ref0704524.2e3 (p=1) 2017-11-14 09:45:27,724 [DEBUG] contig 2017-11-14 09:45:27,724 [DEBUG] who? ref0704524.2e5 ref0704524.2e3 2017-11-14 09:45:27,724 [DEBUG] Grabbing contig between nodes ref0704524.2e5 & ref0704524.2e3 - [trim 0, 0] 2017-11-14 09:45:27,724 [DEBUG] contig 2806 to 5286 2017-11-14 09:45:27,724 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,725 [DEBUG] Moving from ref0704524.2e3 to ref0704524.3e5 (p=1) 2017-11-14 09:45:27,725 [DEBUG] unimproved gap 2017-11-14 09:45:27,725 [DEBUG] Moving from ref0704524.3e5 to ref0704524.3e3 (p=1) 2017-11-14 09:45:27,725 [DEBUG] contig 2017-11-14 09:45:27,725 [DEBUG] who? ref0704524.3e5 ref0704524.3e3 2017-11-14 09:45:27,725 [DEBUG] Grabbing contig between nodes ref0704524.3e5 & ref0704524.3e3 - [trim 0, 0] 2017-11-14 09:45:27,725 [DEBUG] contig 5566 to 5989 2017-11-14 09:45:27,725 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,725 [DEBUG] Moving from ref0704524.3e3 to ref0704524.4e5 (p=1) 2017-11-14 09:45:27,725 [DEBUG] unimproved gap 2017-11-14 09:45:27,725 [DEBUG] Moving from ref0704524.4e5 to ref0704524.4e3 (p=1) 2017-11-14 09:45:27,725 [DEBUG] contig 2017-11-14 09:45:27,725 [DEBUG] who? ref0704524.4e5 ref0704524.4e3 2017-11-14 09:45:27,726 [DEBUG] Grabbing contig between nodes ref0704524.4e5 & ref0704524.4e3 - [trim 0, 0] 2017-11-14 09:45:27,726 [DEBUG] contig 6226 to 11018 2017-11-14 09:45:27,726 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,726 [DEBUG] Moving from ref0704524.4e3 to ref0704524.5e5 (p=1) 2017-11-14 09:45:27,726 [DEBUG] unimproved gap 2017-11-14 09:45:27,726 [DEBUG] Moving from ref0704524.5e5 to ref0704524.5e3 (p=1) 2017-11-14 09:45:27,726 [DEBUG] contig 2017-11-14 09:45:27,726 [DEBUG] who? ref0704524.5e5 ref0704524.5e3 2017-11-14 09:45:27,726 [DEBUG] Grabbing contig between nodes ref0704524.5e5 & ref0704524.5e3 - [trim 0, 0] 2017-11-14 09:45:27,726 [DEBUG] contig 11164 to 11223 2017-11-14 09:45:27,726 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,726 [DEBUG] Moving from ref0704524.5e3 to ref0704524.6e5 (p=1) 2017-11-14 09:45:27,726 [DEBUG] unimproved gap 2017-11-14 09:45:27,727 [DEBUG] Moving from ref0704524.6e5 to ref0704524.6e3 (p=1) 2017-11-14 09:45:27,727 [DEBUG] contig 2017-11-14 09:45:27,727 [DEBUG] who? ref0704524.6e5 ref0704524.6e3 2017-11-14 09:45:27,727 [DEBUG] Grabbing contig between nodes ref0704524.6e5 & ref0704524.6e3 - [trim 0, 0] 2017-11-14 09:45:27,727 [DEBUG] contig 11594 to 11950 2017-11-14 09:45:27,727 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,727 [DEBUG] Moving from ref0704524.6e3 to ref0704524.7e5 (p=1) 2017-11-14 09:45:27,727 [DEBUG] unimproved gap 2017-11-14 09:45:27,727 [DEBUG] Moving from ref0704524.7e5 to ref0704524.7e3 (p=1) 2017-11-14 09:45:27,727 [DEBUG] contig 2017-11-14 09:45:27,727 [DEBUG] who? ref0704524.7e5 ref0704524.7e3 2017-11-14 09:45:27,727 [DEBUG] Grabbing contig between nodes ref0704524.7e5 & ref0704524.7e3 - [trim 0, 0] 2017-11-14 09:45:27,727 [DEBUG] contig 12180 to 12637 2017-11-14 09:45:27,727 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,728 [DEBUG] Moving from ref0704524.7e3 to ref0704524.8e5 (p=1) 2017-11-14 09:45:27,728 [DEBUG] unimproved gap 2017-11-14 09:45:27,728 [DEBUG] Moving from ref0704524.8e5 to ref0704524.8e3 (p=1) 2017-11-14 09:45:27,728 [DEBUG] contig 2017-11-14 09:45:27,728 [DEBUG] who? ref0704524.8e5 ref0704524.8e3 2017-11-14 09:45:27,728 [DEBUG] Grabbing contig between nodes ref0704524.8e5 & ref0704524.8e3 - [trim 0, 0] 2017-11-14 09:45:27,728 [DEBUG] contig 12663 to 13038 2017-11-14 09:45:27,728 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,728 [DEBUG] Moving from ref0704524.8e3 to ref0704524.9e5 (p=1) 2017-11-14 09:45:27,728 [DEBUG] unimproved gap 2017-11-14 09:45:27,728 [DEBUG] Moving from ref0704524.9e5 to ref0704524.9e3 (p=1) 2017-11-14 09:45:27,729 [DEBUG] contig 2017-11-14 09:45:27,729 [DEBUG] who? ref0704524.9e5 ref0704524.9e3 2017-11-14 09:45:27,729 [DEBUG] Grabbing contig between nodes ref0704524.9e5 & ref0704524.9e3 - [trim 0, 0] 2017-11-14 09:45:27,729 [DEBUG] contig 13086 to 13308 2017-11-14 09:45:27,729 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,729 [DEBUG] Moving from ref0704524.9e3 to ref0704524.10e5 (p=1) 2017-11-14 09:45:27,729 [DEBUG] unimproved gap 2017-11-14 09:45:27,729 [DEBUG] Moving from ref0704524.10e5 to ref0704524.10e3 (p=1) 2017-11-14 09:45:27,729 [DEBUG] contig 2017-11-14 09:45:27,729 [DEBUG] who? ref0704524.10e5 ref0704524.10e3 2017-11-14 09:45:27,729 [DEBUG] Grabbing contig between nodes ref0704524.10e5 & ref0704524.10e3 - [trim 0, 0] 2017-11-14 09:45:27,729 [DEBUG] contig 13457 to 14065 2017-11-14 09:45:27,729 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,729 [DEBUG] Moving from ref0704524.10e3 to ref0704524.11e5 (p=1) 2017-11-14 09:45:27,730 [DEBUG] unimproved gap 2017-11-14 09:45:27,730 [DEBUG] Moving from ref0704524.11e5 to ref0704524.11e3 (p=1) 2017-11-14 09:45:27,730 [DEBUG] contig 2017-11-14 09:45:27,730 [DEBUG] who? ref0704524.11e5 ref0704524.11e3 2017-11-14 09:45:27,730 [DEBUG] Grabbing contig between nodes ref0704524.11e5 & ref0704524.11e3 - [trim 0, 0] 2017-11-14 09:45:27,730 [DEBUG] contig 14237 to 14817 2017-11-14 09:45:27,730 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,730 [DEBUG] Moving from ref0704524.11e3 to ref0704524.12e5 (p=1) 2017-11-14 09:45:27,730 [DEBUG] unimproved gap 2017-11-14 09:45:27,730 [DEBUG] Moving from ref0704524.12e5 to ref0704524.12e3 (p=1) 2017-11-14 09:45:27,730 [DEBUG] contig 2017-11-14 09:45:27,730 [DEBUG] who? ref0704524.12e5 ref0704524.12e3 2017-11-14 09:45:27,730 [DEBUG] Grabbing contig between nodes ref0704524.12e5 & ref0704524.12e3 - [trim 0, 0] 2017-11-14 09:45:27,731 [DEBUG] contig 14960 to 15707 2017-11-14 09:45:27,731 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,731 [DEBUG] Moving from ref0704524.12e3 to ref0704524.13e5 (p=1) 2017-11-14 09:45:27,731 [DEBUG] unimproved gap 2017-11-14 09:45:27,731 [DEBUG] Moving from ref0704524.13e5 to ref0704524.13e3 (p=1) 2017-11-14 09:45:27,731 [DEBUG] contig 2017-11-14 09:45:27,731 [DEBUG] who? ref0704524.13e5 ref0704524.13e3 2017-11-14 09:45:27,731 [DEBUG] Grabbing contig between nodes ref0704524.13e5 & ref0704524.13e3 - [trim 0, 0] 2017-11-14 09:45:27,731 [DEBUG] contig 16051 to 16169 2017-11-14 09:45:27,731 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,731 [DEBUG] Moving from ref0704524.13e3 to ref0704524.14e5 (p=1) 2017-11-14 09:45:27,731 [DEBUG] unimproved gap 2017-11-14 09:45:27,731 [DEBUG] Moving from ref0704524.14e5 to ref0704524.14e3 (p=1) 2017-11-14 09:45:27,732 [DEBUG] contig 2017-11-14 09:45:27,732 [DEBUG] who? ref0704524.14e5 ref0704524.14e3 2017-11-14 09:45:27,732 [DEBUG] Grabbing contig between nodes ref0704524.14e5 & ref0704524.14e3 - [trim 0, 0] 2017-11-14 09:45:27,732 [DEBUG] contig 16331 to 16695 2017-11-14 09:45:27,732 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,732 [DEBUG] Moving from ref0704524.14e3 to ref0704524.15e5 (p=1) 2017-11-14 09:45:27,732 [DEBUG] unimproved gap 2017-11-14 09:45:27,732 [DEBUG] Moving from ref0704524.15e5 to ref0704524.15e3 (p=1) 2017-11-14 09:45:27,732 [DEBUG] contig 2017-11-14 09:45:27,732 [DEBUG] who? ref0704524.15e5 ref0704524.15e3 2017-11-14 09:45:27,732 [DEBUG] Grabbing contig between nodes ref0704524.15e5 & ref0704524.15e3 - [trim 0, 0] 2017-11-14 09:45:27,732 [DEBUG] contig 17103 to 26392 2017-11-14 09:45:27,732 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,733 [DEBUG] Moving from ref0704524.15e3 to ref0704524.16e5 (p=1) 2017-11-14 09:45:27,733 [DEBUG] unimproved gap 2017-11-14 09:45:27,733 [DEBUG] Moving from ref0704524.16e5 to ref0704524.16e3 (p=1) 2017-11-14 09:45:27,733 [DEBUG] contig 2017-11-14 09:45:27,733 [DEBUG] who? ref0704524.16e5 ref0704524.16e3 2017-11-14 09:45:27,733 [DEBUG] Grabbing contig between nodes ref0704524.16e5 & ref0704524.16e3 - [trim 0, 0] 2017-11-14 09:45:27,733 [DEBUG] contig 26700 to 28355 2017-11-14 09:45:27,733 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,733 [DEBUG] Moving from ref0704524.16e3 to ref0704524.17e5 (p=1) 2017-11-14 09:45:27,733 [DEBUG] unimproved gap 2017-11-14 09:45:27,733 [DEBUG] Moving from ref0704524.17e5 to ref0704524.17e3 (p=1) 2017-11-14 09:45:27,733 [DEBUG] contig 2017-11-14 09:45:27,733 [DEBUG] who? ref0704524.17e5 ref0704524.17e3 2017-11-14 09:45:27,734 [DEBUG] Grabbing contig between nodes ref0704524.17e5 & ref0704524.17e3 - [trim 0, 0] 2017-11-14 09:45:27,734 [DEBUG] contig 28412 to 29743 2017-11-14 09:45:27,734 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,734 [DEBUG] Moving from ref0704524.17e3 to ref0704524.18e5 (p=1) 2017-11-14 09:45:27,734 [DEBUG] unimproved gap 2017-11-14 09:45:27,734 [DEBUG] Moving from ref0704524.18e5 to ref0704524.18e3 (p=1) 2017-11-14 09:45:27,734 [DEBUG] contig 2017-11-14 09:45:27,734 [DEBUG] who? ref0704524.18e5 ref0704524.18e3 2017-11-14 09:45:27,734 [DEBUG] Grabbing contig between nodes ref0704524.18e5 & ref0704524.18e3 - [trim 0, 0] 2017-11-14 09:45:27,734 [DEBUG] contig 29958 to 31127 2017-11-14 09:45:27,734 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,734 [DEBUG] Moving from ref0704524.18e3 to ref0704524.19e5 (p=1) 2017-11-14 09:45:27,734 [DEBUG] unimproved gap 2017-11-14 09:45:27,734 [DEBUG] Moving from ref0704524.19e5 to ref0704524.19e3 (p=1) 2017-11-14 09:45:27,735 [DEBUG] contig 2017-11-14 09:45:27,735 [DEBUG] who? ref0704524.19e5 ref0704524.19e3 2017-11-14 09:45:27,735 [DEBUG] Grabbing contig between nodes ref0704524.19e5 & ref0704524.19e3 - [trim 0, 0] 2017-11-14 09:45:27,735 [DEBUG] contig 31259 to 32023 2017-11-14 09:45:27,735 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,735 [DEBUG] Moving from ref0704524.19e3 to ref0704524.20e5 (p=1) 2017-11-14 09:45:27,735 [DEBUG] unimproved gap 2017-11-14 09:45:27,735 [DEBUG] Moving from ref0704524.20e5 to ref0704524e3 (p=1) 2017-11-14 09:45:27,735 [DEBUG] contig 2017-11-14 09:45:27,735 [DEBUG] who? ref0704524.20e5 ref0704524e3 2017-11-14 09:45:27,735 [DEBUG] Grabbing contig between nodes ref0704524.20e5 & ref0704524e3 - [trim 0, 0] 2017-11-14 09:45:27,735 [DEBUG] contig 32307 to 32660 2017-11-14 09:45:27,735 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,736 [DEBUG] Contig 25 2017-11-14 09:45:27,738 [DEBUG] Moving from ref0623457e3 to ref0623457.20e5 (p=1) 2017-11-14 09:45:27,738 [DEBUG] contig 2017-11-14 09:45:27,738 [DEBUG] who? ref0623457.20e5 ref0623457e3 2017-11-14 09:45:27,739 [DEBUG] Grabbing contig between nodes ref0623457.20e5 & ref0623457e3 - [trim 0, 0] 2017-11-14 09:45:27,739 [DEBUG] contig 15111 to 17988 2017-11-14 09:45:27,739 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,739 [DEBUG] Moving from ref0623457.20e5 to ref0623457.19e3 (p=1) 2017-11-14 09:45:27,739 [DEBUG] unimproved gap 2017-11-14 09:45:27,739 [DEBUG] Moving from ref0623457.19e3 to ref0623457.19e5 (p=1) 2017-11-14 09:45:27,739 [DEBUG] contig 2017-11-14 09:45:27,739 [DEBUG] who? ref0623457.19e5 ref0623457.19e3 2017-11-14 09:45:27,739 [DEBUG] Grabbing contig between nodes ref0623457.19e5 & ref0623457.19e3 - [trim 0, 0] 2017-11-14 09:45:27,739 [DEBUG] contig 14803 to 14986 2017-11-14 09:45:27,739 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,739 [DEBUG] Moving from ref0623457.19e5 to ref0623457.18e3 (p=1) 2017-11-14 09:45:27,739 [DEBUG] unimproved gap 2017-11-14 09:45:27,739 [DEBUG] Moving from ref0623457.18e3 to ref0623457.18e5 (p=1) 2017-11-14 09:45:27,740 [DEBUG] contig 2017-11-14 09:45:27,740 [DEBUG] who? ref0623457.18e5 ref0623457.18e3 2017-11-14 09:45:27,740 [DEBUG] Grabbing contig between nodes ref0623457.18e5 & ref0623457.18e3 - [trim 0, 0] 2017-11-14 09:45:27,740 [DEBUG] contig 14464 to 14600 2017-11-14 09:45:27,740 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,740 [DEBUG] Moving from ref0623457.18e5 to ref0623457.17e3 (p=1) 2017-11-14 09:45:27,740 [DEBUG] unimproved gap 2017-11-14 09:45:27,740 [DEBUG] Moving from ref0623457.17e3 to ref0623457.17e5 (p=1) 2017-11-14 09:45:27,740 [DEBUG] contig 2017-11-14 09:45:27,740 [DEBUG] who? ref0623457.17e5 ref0623457.17e3 2017-11-14 09:45:27,740 [DEBUG] Grabbing contig between nodes ref0623457.17e5 & ref0623457.17e3 - [trim 0, 0] 2017-11-14 09:45:27,740 [DEBUG] contig 13879 to 14254 2017-11-14 09:45:27,741 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,741 [DEBUG] Moving from ref0623457.17e5 to ref0623457.16e3 (p=1) 2017-11-14 09:45:27,741 [DEBUG] unimproved gap 2017-11-14 09:45:27,741 [DEBUG] Moving from ref0623457.16e3 to ref0623457.16e5 (p=1) 2017-11-14 09:45:27,741 [DEBUG] contig 2017-11-14 09:45:27,741 [DEBUG] who? ref0623457.16e5 ref0623457.16e3 2017-11-14 09:45:27,741 [DEBUG] Grabbing contig between nodes ref0623457.16e5 & ref0623457.16e3 - [trim 0, 0] 2017-11-14 09:45:27,741 [DEBUG] contig 13086 to 13494 2017-11-14 09:45:27,741 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,741 [DEBUG] Moving from ref0623457.16e5 to ref0623457.15e3 (p=1) 2017-11-14 09:45:27,741 [DEBUG] unimproved gap 2017-11-14 09:45:27,741 [DEBUG] Moving from ref0623457.15e3 to ref0623457.15e5 (p=1) 2017-11-14 09:45:27,741 [DEBUG] contig 2017-11-14 09:45:27,742 [DEBUG] who? ref0623457.15e5 ref0623457.15e3 2017-11-14 09:45:27,742 [DEBUG] Grabbing contig between nodes ref0623457.15e5 & ref0623457.15e3 - [trim 0, 0] 2017-11-14 09:45:27,742 [DEBUG] contig 10617 to 13036 2017-11-14 09:45:27,742 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,742 [DEBUG] Moving from ref0623457.15e5 to ref0623457.14e3 (p=1) 2017-11-14 09:45:27,742 [DEBUG] unimproved gap 2017-11-14 09:45:27,742 [DEBUG] Moving from ref0623457.14e3 to ref0623457.14e5 (p=1) 2017-11-14 09:45:27,742 [DEBUG] contig 2017-11-14 09:45:27,742 [DEBUG] who? ref0623457.14e5 ref0623457.14e3 2017-11-14 09:45:27,742 [DEBUG] Grabbing contig between nodes ref0623457.14e5 & ref0623457.14e3 - [trim 0, 0] 2017-11-14 09:45:27,742 [DEBUG] contig 10081 to 10353 2017-11-14 09:45:27,742 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,742 [DEBUG] Moving from ref0623457.14e5 to ref0623457.13e3 (p=1) 2017-11-14 09:45:27,743 [DEBUG] unimproved gap 2017-11-14 09:45:27,743 [DEBUG] Moving from ref0623457.13e3 to ref0623457.13e5 (p=1) 2017-11-14 09:45:27,743 [DEBUG] contig 2017-11-14 09:45:27,743 [DEBUG] who? ref0623457.13e5 ref0623457.13e3 2017-11-14 09:45:27,743 [DEBUG] Grabbing contig between nodes ref0623457.13e5 & ref0623457.13e3 - [trim 0, 0] 2017-11-14 09:45:27,743 [DEBUG] contig 8891 to 9660 2017-11-14 09:45:27,743 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,743 [DEBUG] Moving from ref0623457.13e5 to ref0623457.12e3 (p=1) 2017-11-14 09:45:27,743 [DEBUG] unimproved gap 2017-11-14 09:45:27,743 [DEBUG] Moving from ref0623457.12e3 to ref0623457.12e5 (p=1) 2017-11-14 09:45:27,743 [DEBUG] contig 2017-11-14 09:45:27,743 [DEBUG] who? ref0623457.12e5 ref0623457.12e3 2017-11-14 09:45:27,743 [DEBUG] Grabbing contig between nodes ref0623457.12e5 & ref0623457.12e3 - [trim 0, 0] 2017-11-14 09:45:27,743 [DEBUG] contig 6377 to 8656 2017-11-14 09:45:27,744 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,744 [DEBUG] Moving from ref0623457.12e5 to ref0623457.11e3 (p=1) 2017-11-14 09:45:27,744 [DEBUG] unimproved gap 2017-11-14 09:45:27,744 [DEBUG] Moving from ref0623457.11e3 to ref0623457.11e5 (p=1) 2017-11-14 09:45:27,744 [DEBUG] contig 2017-11-14 09:45:27,744 [DEBUG] who? ref0623457.11e5 ref0623457.11e3 2017-11-14 09:45:27,744 [DEBUG] Grabbing contig between nodes ref0623457.11e5 & ref0623457.11e3 - [trim 0, 0] 2017-11-14 09:45:27,744 [DEBUG] contig 6117 to 6235 2017-11-14 09:45:27,744 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,744 [DEBUG] Moving from ref0623457.11e5 to ref0623457.10e3 (p=1) 2017-11-14 09:45:27,744 [DEBUG] unimproved gap 2017-11-14 09:45:27,744 [DEBUG] Moving from ref0623457.10e3 to ref0623457.10e5 (p=1) 2017-11-14 09:45:27,745 [DEBUG] contig 2017-11-14 09:45:27,745 [DEBUG] who? ref0623457.10e5 ref0623457.10e3 2017-11-14 09:45:27,745 [DEBUG] Grabbing contig between nodes ref0623457.10e5 & ref0623457.10e3 - [trim 0, 0] 2017-11-14 09:45:27,745 [DEBUG] contig 6054 to 6089 2017-11-14 09:45:27,745 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,745 [DEBUG] Moving from ref0623457.10e5 to ref0623457.9e3 (p=1) 2017-11-14 09:45:27,745 [DEBUG] unimproved gap 2017-11-14 09:45:27,745 [DEBUG] Moving from ref0623457.9e3 to ref0623457.9e5 (p=1) 2017-11-14 09:45:27,745 [DEBUG] contig 2017-11-14 09:45:27,745 [DEBUG] who? ref0623457.9e5 ref0623457.9e3 2017-11-14 09:45:27,745 [DEBUG] Grabbing contig between nodes ref0623457.9e5 & ref0623457.9e3 - [trim 0, 0] 2017-11-14 09:45:27,745 [DEBUG] contig 5874 to 5911 2017-11-14 09:45:27,745 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,746 [DEBUG] Moving from ref0623457.9e5 to ref0623457.8e3 (p=1) 2017-11-14 09:45:27,746 [DEBUG] unimproved gap 2017-11-14 09:45:27,746 [DEBUG] Moving from ref0623457.8e3 to ref0623457.8e5 (p=1) 2017-11-14 09:45:27,746 [DEBUG] contig 2017-11-14 09:45:27,746 [DEBUG] who? ref0623457.8e5 ref0623457.8e3 2017-11-14 09:45:27,746 [DEBUG] Grabbing contig between nodes ref0623457.8e5 & ref0623457.8e3 - [trim 0, 0] 2017-11-14 09:45:27,746 [DEBUG] contig 5052 to 5833 2017-11-14 09:45:27,746 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,746 [DEBUG] Moving from ref0623457.8e5 to ref0623457.7e3 (p=1) 2017-11-14 09:45:27,746 [DEBUG] unimproved gap 2017-11-14 09:45:27,746 [DEBUG] Moving from ref0623457.7e3 to ref0623457.7e5 (p=1) 2017-11-14 09:45:27,746 [DEBUG] contig 2017-11-14 09:45:27,746 [DEBUG] who? ref0623457.7e5 ref0623457.7e3 2017-11-14 09:45:27,747 [DEBUG] Grabbing contig between nodes ref0623457.7e5 & ref0623457.7e3 - [trim 0, 0] 2017-11-14 09:45:27,747 [DEBUG] contig 4581 to 4906 2017-11-14 09:45:27,747 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,747 [DEBUG] Moving from ref0623457.7e5 to ref0623457.6e3 (p=1) 2017-11-14 09:45:27,747 [DEBUG] unimproved gap 2017-11-14 09:45:27,747 [DEBUG] Moving from ref0623457.6e3 to ref0623457.6e5 (p=1) 2017-11-14 09:45:27,747 [DEBUG] contig 2017-11-14 09:45:27,747 [DEBUG] who? ref0623457.6e5 ref0623457.6e3 2017-11-14 09:45:27,747 [DEBUG] Grabbing contig between nodes ref0623457.6e5 & ref0623457.6e3 - [trim 0, 0] 2017-11-14 09:45:27,747 [DEBUG] contig 4421 to 4497 2017-11-14 09:45:27,747 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,747 [DEBUG] Moving from ref0623457.6e5 to ref0623457.5e3 (p=1) 2017-11-14 09:45:27,747 [DEBUG] unimproved gap 2017-11-14 09:45:27,747 [DEBUG] Moving from ref0623457.5e3 to ref0623457.5e5 (p=1) 2017-11-14 09:45:27,748 [DEBUG] contig 2017-11-14 09:45:27,748 [DEBUG] who? ref0623457.5e5 ref0623457.5e3 2017-11-14 09:45:27,748 [DEBUG] Grabbing contig between nodes ref0623457.5e5 & ref0623457.5e3 - [trim 0, 0] 2017-11-14 09:45:27,748 [DEBUG] contig 4302 to 4371 2017-11-14 09:45:27,748 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,748 [DEBUG] Moving from ref0623457.5e5 to ref0623457.4e3 (p=1) 2017-11-14 09:45:27,748 [DEBUG] unimproved gap 2017-11-14 09:45:27,748 [DEBUG] Moving from ref0623457.4e3 to ref0623457.4e5 (p=1) 2017-11-14 09:45:27,748 [DEBUG] contig 2017-11-14 09:45:27,748 [DEBUG] who? ref0623457.4e5 ref0623457.4e3 2017-11-14 09:45:27,748 [DEBUG] Grabbing contig between nodes ref0623457.4e5 & ref0623457.4e3 - [trim 0, 0] 2017-11-14 09:45:27,748 [DEBUG] contig 3910 to 3959 2017-11-14 09:45:27,749 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,749 [DEBUG] Moving from ref0623457.4e5 to ref0623457.3e3 (p=1) 2017-11-14 09:45:27,749 [DEBUG] unimproved gap 2017-11-14 09:45:27,749 [DEBUG] Moving from ref0623457.3e3 to ref0623457.3e5 (p=1) 2017-11-14 09:45:27,749 [DEBUG] contig 2017-11-14 09:45:27,749 [DEBUG] who? ref0623457.3e5 ref0623457.3e3 2017-11-14 09:45:27,749 [DEBUG] Grabbing contig between nodes ref0623457.3e5 & ref0623457.3e3 - [trim 0, 0] 2017-11-14 09:45:27,749 [DEBUG] contig 3516 to 3607 2017-11-14 09:45:27,749 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,749 [DEBUG] Moving from ref0623457.3e5 to ref0623457.2e3 (p=1) 2017-11-14 09:45:27,749 [DEBUG] unimproved gap 2017-11-14 09:45:27,749 [DEBUG] Moving from ref0623457.2e3 to ref0623457.2e5 (p=1) 2017-11-14 09:45:27,749 [DEBUG] contig 2017-11-14 09:45:27,750 [DEBUG] who? ref0623457.2e5 ref0623457.2e3 2017-11-14 09:45:27,750 [DEBUG] Grabbing contig between nodes ref0623457.2e5 & ref0623457.2e3 - [trim 0, 0] 2017-11-14 09:45:27,750 [DEBUG] contig 3199 to 3402 2017-11-14 09:45:27,750 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,750 [DEBUG] Moving from ref0623457.2e5 to ref0623457.1e3 (p=1) 2017-11-14 09:45:27,750 [DEBUG] unimproved gap 2017-11-14 09:45:27,750 [DEBUG] Moving from ref0623457.1e3 to ref0623457.1e5 (p=1) 2017-11-14 09:45:27,750 [DEBUG] contig 2017-11-14 09:45:27,750 [DEBUG] who? ref0623457.1e5 ref0623457.1e3 2017-11-14 09:45:27,750 [DEBUG] Grabbing contig between nodes ref0623457.1e5 & ref0623457.1e3 - [trim 0, 0] 2017-11-14 09:45:27,750 [DEBUG] contig 2597 to 2657 2017-11-14 09:45:27,750 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,750 [DEBUG] Moving from ref0623457.1e5 to ref0623457.0e3 (p=1) 2017-11-14 09:45:27,750 [DEBUG] unimproved gap 2017-11-14 09:45:27,751 [DEBUG] Moving from ref0623457.0e3 to ref0623457e5 (p=1) 2017-11-14 09:45:27,751 [DEBUG] contig 2017-11-14 09:45:27,751 [DEBUG] who? ref0623457e5 ref0623457.0e3 2017-11-14 09:45:27,751 [DEBUG] Grabbing contig between nodes ref0623457e5 & ref0623457.0e3 - [trim 0, 0] 2017-11-14 09:45:27,751 [DEBUG] contig 0 to 2082 2017-11-14 09:45:27,751 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,751 [DEBUG] FirstFlipping 25 2017-11-14 09:45:27,751 [DEBUG] Contig 26 2017-11-14 09:45:27,754 [DEBUG] Moving from ref0087128e5 to ref0087128.0e3 (p=1) 2017-11-14 09:45:27,754 [DEBUG] contig 2017-11-14 09:45:27,754 [DEBUG] who? ref0087128e5 ref0087128.0e3 2017-11-14 09:45:27,754 [DEBUG] Grabbing contig between nodes ref0087128e5 & ref0087128.0e3 - [trim 0, 0] 2017-11-14 09:45:27,754 [DEBUG] contig 0 to 68 2017-11-14 09:45:27,754 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,754 [DEBUG] Moving from ref0087128.0e3 to ref0087128.1e5 (p=1) 2017-11-14 09:45:27,754 [DEBUG] unimproved gap 2017-11-14 09:45:27,754 [DEBUG] Moving from ref0087128.1e5 to ref0087128.1e3 (p=1) 2017-11-14 09:45:27,754 [DEBUG] contig 2017-11-14 09:45:27,754 [DEBUG] who? ref0087128.1e5 ref0087128.1e3 2017-11-14 09:45:27,755 [DEBUG] Grabbing contig between nodes ref0087128.1e5 & ref0087128.1e3 - [trim 0, 0] 2017-11-14 09:45:27,755 [DEBUG] contig 128 to 163 2017-11-14 09:45:27,755 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,755 [DEBUG] Moving from ref0087128.1e3 to ref0087128.2e5 (p=1) 2017-11-14 09:45:27,755 [DEBUG] unimproved gap 2017-11-14 09:45:27,755 [DEBUG] Moving from ref0087128.2e5 to ref0087128.2e3 (p=1) 2017-11-14 09:45:27,755 [DEBUG] contig 2017-11-14 09:45:27,755 [DEBUG] who? ref0087128.2e5 ref0087128.2e3 2017-11-14 09:45:27,755 [DEBUG] Grabbing contig between nodes ref0087128.2e5 & ref0087128.2e3 - [trim 0, 0] 2017-11-14 09:45:27,755 [DEBUG] contig 529 to 569 2017-11-14 09:45:27,755 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,755 [DEBUG] Moving from ref0087128.2e3 to ref0087128.3e5 (p=1) 2017-11-14 09:45:27,755 [DEBUG] unimproved gap 2017-11-14 09:45:27,756 [DEBUG] Moving from ref0087128.3e5 to ref0087128.3e3 (p=1) 2017-11-14 09:45:27,756 [DEBUG] contig 2017-11-14 09:45:27,756 [DEBUG] who? ref0087128.3e5 ref0087128.3e3 2017-11-14 09:45:27,756 [DEBUG] Grabbing contig between nodes ref0087128.3e5 & ref0087128.3e3 - [trim 0, 0] 2017-11-14 09:45:27,756 [DEBUG] contig 675 to 1070 2017-11-14 09:45:27,756 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,756 [DEBUG] Moving from ref0087128.3e3 to ref0087128.4e5 (p=1) 2017-11-14 09:45:27,756 [DEBUG] unimproved gap 2017-11-14 09:45:27,756 [DEBUG] Moving from ref0087128.4e5 to ref0087128.4e3 (p=1) 2017-11-14 09:45:27,756 [DEBUG] contig 2017-11-14 09:45:27,756 [DEBUG] who? ref0087128.4e5 ref0087128.4e3 2017-11-14 09:45:27,756 [DEBUG] Grabbing contig between nodes ref0087128.4e5 & ref0087128.4e3 - [trim 0, 0] 2017-11-14 09:45:27,756 [DEBUG] contig 1403 to 6244 2017-11-14 09:45:27,756 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,757 [DEBUG] Moving from ref0087128.4e3 to ref0087128.5e5 (p=1) 2017-11-14 09:45:27,757 [DEBUG] unimproved gap 2017-11-14 09:45:27,757 [DEBUG] Moving from ref0087128.5e5 to ref0087128.5e3 (p=1) 2017-11-14 09:45:27,757 [DEBUG] contig 2017-11-14 09:45:27,757 [DEBUG] who? ref0087128.5e5 ref0087128.5e3 2017-11-14 09:45:27,757 [DEBUG] Grabbing contig between nodes ref0087128.5e5 & ref0087128.5e3 - [trim 0, 0] 2017-11-14 09:45:27,757 [DEBUG] contig 6456 to 7433 2017-11-14 09:45:27,757 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,757 [DEBUG] Moving from ref0087128.5e3 to ref0087128.6e5 (p=1) 2017-11-14 09:45:27,757 [DEBUG] unimproved gap 2017-11-14 09:45:27,757 [DEBUG] Moving from ref0087128.6e5 to ref0087128.6e3 (p=1) 2017-11-14 09:45:27,757 [DEBUG] contig 2017-11-14 09:45:27,757 [DEBUG] who? ref0087128.6e5 ref0087128.6e3 2017-11-14 09:45:27,758 [DEBUG] Grabbing contig between nodes ref0087128.6e5 & ref0087128.6e3 - [trim 0, 0] 2017-11-14 09:45:27,758 [DEBUG] contig 7588 to 18638 2017-11-14 09:45:27,758 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,758 [DEBUG] Moving from ref0087128.6e3 to ref0087128.7e5 (p=1) 2017-11-14 09:45:27,758 [DEBUG] unimproved gap 2017-11-14 09:45:27,758 [DEBUG] Moving from ref0087128.7e5 to ref0087128.7e3 (p=1) 2017-11-14 09:45:27,758 [DEBUG] contig 2017-11-14 09:45:27,758 [DEBUG] who? ref0087128.7e5 ref0087128.7e3 2017-11-14 09:45:27,758 [DEBUG] Grabbing contig between nodes ref0087128.7e5 & ref0087128.7e3 - [trim 0, 0] 2017-11-14 09:45:27,758 [DEBUG] contig 19306 to 21071 2017-11-14 09:45:27,758 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,758 [DEBUG] Moving from ref0087128.7e3 to ref0087128.8e5 (p=1) 2017-11-14 09:45:27,758 [DEBUG] unimproved gap 2017-11-14 09:45:27,759 [DEBUG] Moving from ref0087128.8e5 to ref0087128.8e3 (p=1) 2017-11-14 09:45:27,759 [DEBUG] contig 2017-11-14 09:45:27,759 [DEBUG] who? ref0087128.8e5 ref0087128.8e3 2017-11-14 09:45:27,759 [DEBUG] Grabbing contig between nodes ref0087128.8e5 & ref0087128.8e3 - [trim 0, 0] 2017-11-14 09:45:27,759 [DEBUG] contig 21763 to 22297 2017-11-14 09:45:27,759 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,759 [DEBUG] Moving from ref0087128.8e3 to ref0087128.9e5 (p=1) 2017-11-14 09:45:27,759 [DEBUG] unimproved gap 2017-11-14 09:45:27,759 [DEBUG] Moving from ref0087128.9e5 to ref0087128.9e3 (p=1) 2017-11-14 09:45:27,759 [DEBUG] contig 2017-11-14 09:45:27,759 [DEBUG] who? ref0087128.9e5 ref0087128.9e3 2017-11-14 09:45:27,759 [DEBUG] Grabbing contig between nodes ref0087128.9e5 & ref0087128.9e3 - [trim 0, 0] 2017-11-14 09:45:27,760 [DEBUG] contig 22391 to 23214 2017-11-14 09:45:27,760 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,760 [DEBUG] Moving from ref0087128.9e3 to ref0087128.10e5 (p=1) 2017-11-14 09:45:27,760 [DEBUG] unimproved gap 2017-11-14 09:45:27,760 [DEBUG] Moving from ref0087128.10e5 to ref0087128.10e3 (p=1) 2017-11-14 09:45:27,760 [DEBUG] contig 2017-11-14 09:45:27,760 [DEBUG] who? ref0087128.10e5 ref0087128.10e3 2017-11-14 09:45:27,760 [DEBUG] Grabbing contig between nodes ref0087128.10e5 & ref0087128.10e3 - [trim 0, 0] 2017-11-14 09:45:27,760 [DEBUG] contig 23318 to 23362 2017-11-14 09:45:27,760 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,760 [DEBUG] Moving from ref0087128.10e3 to ref0087128.11e5 (p=1) 2017-11-14 09:45:27,760 [DEBUG] unimproved gap 2017-11-14 09:45:27,760 [DEBUG] Moving from ref0087128.11e5 to ref0087128.11e3 (p=1) 2017-11-14 09:45:27,761 [DEBUG] contig 2017-11-14 09:45:27,761 [DEBUG] who? ref0087128.11e5 ref0087128.11e3 2017-11-14 09:45:27,761 [DEBUG] Grabbing contig between nodes ref0087128.11e5 & ref0087128.11e3 - [trim 0, 0] 2017-11-14 09:45:27,761 [DEBUG] contig 23523 to 23587 2017-11-14 09:45:27,761 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,761 [DEBUG] Moving from ref0087128.11e3 to ref0087128.12e5 (p=1) 2017-11-14 09:45:27,761 [DEBUG] unimproved gap 2017-11-14 09:45:27,761 [DEBUG] Moving from ref0087128.12e5 to ref0087128.12e3 (p=1) 2017-11-14 09:45:27,761 [DEBUG] contig 2017-11-14 09:45:27,761 [DEBUG] who? ref0087128.12e5 ref0087128.12e3 2017-11-14 09:45:27,761 [DEBUG] Grabbing contig between nodes ref0087128.12e5 & ref0087128.12e3 - [trim 0, 0] 2017-11-14 09:45:27,761 [DEBUG] contig 23680 to 24316 2017-11-14 09:45:27,761 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,761 [DEBUG] Moving from ref0087128.12e3 to ref0087128.13e5 (p=1) 2017-11-14 09:45:27,762 [DEBUG] unimproved gap 2017-11-14 09:45:27,762 [DEBUG] Moving from ref0087128.13e5 to ref0087128.13e3 (p=1) 2017-11-14 09:45:27,762 [DEBUG] contig 2017-11-14 09:45:27,762 [DEBUG] who? ref0087128.13e5 ref0087128.13e3 2017-11-14 09:45:27,762 [DEBUG] Grabbing contig between nodes ref0087128.13e5 & ref0087128.13e3 - [trim 0, 0] 2017-11-14 09:45:27,762 [DEBUG] contig 24369 to 26174 2017-11-14 09:45:27,762 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,762 [DEBUG] Moving from ref0087128.13e3 to ref0087128.14e5 (p=1) 2017-11-14 09:45:27,762 [DEBUG] unimproved gap 2017-11-14 09:45:27,762 [DEBUG] Moving from ref0087128.14e5 to ref0087128.14e3 (p=1) 2017-11-14 09:45:27,762 [DEBUG] contig 2017-11-14 09:45:27,762 [DEBUG] who? ref0087128.14e5 ref0087128.14e3 2017-11-14 09:45:27,762 [DEBUG] Grabbing contig between nodes ref0087128.14e5 & ref0087128.14e3 - [trim 0, 0] 2017-11-14 09:45:27,763 [DEBUG] contig 26687 to 29027 2017-11-14 09:45:27,763 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,763 [DEBUG] Moving from ref0087128.14e3 to ref0087128.15e5 (p=1) 2017-11-14 09:45:27,763 [DEBUG] unimproved gap 2017-11-14 09:45:27,763 [DEBUG] Moving from ref0087128.15e5 to ref0087128.15e3 (p=1) 2017-11-14 09:45:27,763 [DEBUG] contig 2017-11-14 09:45:27,763 [DEBUG] who? ref0087128.15e5 ref0087128.15e3 2017-11-14 09:45:27,763 [DEBUG] Grabbing contig between nodes ref0087128.15e5 & ref0087128.15e3 - [trim 0, 0] 2017-11-14 09:45:27,763 [DEBUG] contig 29437 to 31213 2017-11-14 09:45:27,763 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,763 [DEBUG] Moving from ref0087128.15e3 to ref0087128.16e5 (p=1) 2017-11-14 09:45:27,763 [DEBUG] unimproved gap 2017-11-14 09:45:27,763 [DEBUG] Moving from ref0087128.16e5 to ref0087128.16e3 (p=1) 2017-11-14 09:45:27,763 [DEBUG] contig 2017-11-14 09:45:27,764 [DEBUG] who? ref0087128.16e5 ref0087128.16e3 2017-11-14 09:45:27,764 [DEBUG] Grabbing contig between nodes ref0087128.16e5 & ref0087128.16e3 - [trim 0, 0] 2017-11-14 09:45:27,764 [DEBUG] contig 31501 to 33706 2017-11-14 09:45:27,764 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,764 [DEBUG] Moving from ref0087128.16e3 to ref0087128.17e5 (p=1) 2017-11-14 09:45:27,764 [DEBUG] unimproved gap 2017-11-14 09:45:27,764 [DEBUG] Moving from ref0087128.17e5 to ref0087128.17e3 (p=1) 2017-11-14 09:45:27,764 [DEBUG] contig 2017-11-14 09:45:27,764 [DEBUG] who? ref0087128.17e5 ref0087128.17e3 2017-11-14 09:45:27,764 [DEBUG] Grabbing contig between nodes ref0087128.17e5 & ref0087128.17e3 - [trim 0, 0] 2017-11-14 09:45:27,764 [DEBUG] contig 33779 to 33894 2017-11-14 09:45:27,765 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,765 [DEBUG] Moving from ref0087128.17e3 to ref0087128.18e5 (p=1) 2017-11-14 09:45:27,765 [DEBUG] unimproved gap 2017-11-14 09:45:27,765 [DEBUG] Moving from ref0087128.18e5 to ref0087128.18e3 (p=1) 2017-11-14 09:45:27,765 [DEBUG] contig 2017-11-14 09:45:27,765 [DEBUG] who? ref0087128.18e5 ref0087128.18e3 2017-11-14 09:45:27,765 [DEBUG] Grabbing contig between nodes ref0087128.18e5 & ref0087128.18e3 - [trim 0, 0] 2017-11-14 09:45:27,765 [DEBUG] contig 34402 to 35504 2017-11-14 09:45:27,765 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,765 [DEBUG] Moving from ref0087128.18e3 to ref0087128.19e5 (p=1) 2017-11-14 09:45:27,765 [DEBUG] unimproved gap 2017-11-14 09:45:27,765 [DEBUG] Moving from ref0087128.19e5 to ref0087128e3 (p=1) 2017-11-14 09:45:27,765 [DEBUG] contig 2017-11-14 09:45:27,765 [DEBUG] who? ref0087128.19e5 ref0087128e3 2017-11-14 09:45:27,766 [DEBUG] Grabbing contig between nodes ref0087128.19e5 & ref0087128e3 - [trim 0, 0] 2017-11-14 09:45:27,766 [DEBUG] contig 35672 to 36847 2017-11-14 09:45:27,766 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,766 [DEBUG] Contig 27 2017-11-14 09:45:27,768 [DEBUG] Moving from ref0565288e5 to ref0565288.0e3 (p=1) 2017-11-14 09:45:27,768 [DEBUG] contig 2017-11-14 09:45:27,768 [DEBUG] who? ref0565288e5 ref0565288.0e3 2017-11-14 09:45:27,769 [DEBUG] Grabbing contig between nodes ref0565288e5 & ref0565288.0e3 - [trim 0, 0] 2017-11-14 09:45:27,769 [DEBUG] contig 0 to 2133 2017-11-14 09:45:27,769 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,769 [DEBUG] Moving from ref0565288.0e3 to ref0565288.1e5 (p=1) 2017-11-14 09:45:27,769 [DEBUG] unimproved gap 2017-11-14 09:45:27,769 [DEBUG] Moving from ref0565288.1e5 to ref0565288.1e3 (p=1) 2017-11-14 09:45:27,769 [DEBUG] contig 2017-11-14 09:45:27,769 [DEBUG] who? ref0565288.1e5 ref0565288.1e3 2017-11-14 09:45:27,769 [DEBUG] Grabbing contig between nodes ref0565288.1e5 & ref0565288.1e3 - [trim 0, 0] 2017-11-14 09:45:27,769 [DEBUG] contig 2384 to 5580 2017-11-14 09:45:27,769 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,769 [DEBUG] Moving from ref0565288.1e3 to ref0565288.2e5 (p=1) 2017-11-14 09:45:27,769 [DEBUG] unimproved gap 2017-11-14 09:45:27,770 [DEBUG] Moving from ref0565288.2e5 to ref0565288.2e3 (p=1) 2017-11-14 09:45:27,770 [DEBUG] contig 2017-11-14 09:45:27,770 [DEBUG] who? ref0565288.2e5 ref0565288.2e3 2017-11-14 09:45:27,770 [DEBUG] Grabbing contig between nodes ref0565288.2e5 & ref0565288.2e3 - [trim 0, 0] 2017-11-14 09:45:27,770 [DEBUG] contig 5795 to 5836 2017-11-14 09:45:27,770 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,770 [DEBUG] Moving from ref0565288.2e3 to ref0565288.3e5 (p=1) 2017-11-14 09:45:27,770 [DEBUG] unimproved gap 2017-11-14 09:45:27,770 [DEBUG] Moving from ref0565288.3e5 to ref0565288.3e3 (p=1) 2017-11-14 09:45:27,770 [DEBUG] contig 2017-11-14 09:45:27,770 [DEBUG] who? ref0565288.3e5 ref0565288.3e3 2017-11-14 09:45:27,770 [DEBUG] Grabbing contig between nodes ref0565288.3e5 & ref0565288.3e3 - [trim 0, 0] 2017-11-14 09:45:27,770 [DEBUG] contig 6128 to 8203 2017-11-14 09:45:27,771 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,771 [DEBUG] Moving from ref0565288.3e3 to ref0565288.4e5 (p=1) 2017-11-14 09:45:27,771 [DEBUG] unimproved gap 2017-11-14 09:45:27,771 [DEBUG] Moving from ref0565288.4e5 to ref0565288.4e3 (p=1) 2017-11-14 09:45:27,771 [DEBUG] contig 2017-11-14 09:45:27,771 [DEBUG] who? ref0565288.4e5 ref0565288.4e3 2017-11-14 09:45:27,771 [DEBUG] Grabbing contig between nodes ref0565288.4e5 & ref0565288.4e3 - [trim 0, 0] 2017-11-14 09:45:27,771 [DEBUG] contig 8419 to 12170 2017-11-14 09:45:27,771 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,771 [DEBUG] Moving from ref0565288.4e3 to ref0565288.5e5 (p=1) 2017-11-14 09:45:27,771 [DEBUG] unimproved gap 2017-11-14 09:45:27,771 [DEBUG] Moving from ref0565288.5e5 to ref0565288.5e3 (p=1) 2017-11-14 09:45:27,771 [DEBUG] contig 2017-11-14 09:45:27,772 [DEBUG] who? ref0565288.5e5 ref0565288.5e3 2017-11-14 09:45:27,772 [DEBUG] Grabbing contig between nodes ref0565288.5e5 & ref0565288.5e3 - [trim 0, 0] 2017-11-14 09:45:27,772 [DEBUG] contig 12208 to 14245 2017-11-14 09:45:27,772 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,772 [DEBUG] Moving from ref0565288.5e3 to ref0565288.6e5 (p=1) 2017-11-14 09:45:27,772 [DEBUG] unimproved gap 2017-11-14 09:45:27,772 [DEBUG] Moving from ref0565288.6e5 to ref0565288.6e3 (p=1) 2017-11-14 09:45:27,772 [DEBUG] contig 2017-11-14 09:45:27,772 [DEBUG] who? ref0565288.6e5 ref0565288.6e3 2017-11-14 09:45:27,772 [DEBUG] Grabbing contig between nodes ref0565288.6e5 & ref0565288.6e3 - [trim 0, 0] 2017-11-14 09:45:27,772 [DEBUG] contig 14592 to 14624 2017-11-14 09:45:27,772 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,772 [DEBUG] Moving from ref0565288.6e3 to ref0565288.7e5 (p=1) 2017-11-14 09:45:27,773 [DEBUG] unimproved gap 2017-11-14 09:45:27,773 [DEBUG] Moving from ref0565288.7e5 to ref0565288.7e3 (p=1) 2017-11-14 09:45:27,773 [DEBUG] contig 2017-11-14 09:45:27,773 [DEBUG] who? ref0565288.7e5 ref0565288.7e3 2017-11-14 09:45:27,773 [DEBUG] Grabbing contig between nodes ref0565288.7e5 & ref0565288.7e3 - [trim 0, 0] 2017-11-14 09:45:27,773 [DEBUG] contig 14694 to 14744 2017-11-14 09:45:27,773 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,773 [DEBUG] Moving from ref0565288.7e3 to ref0565288.8e5 (p=1) 2017-11-14 09:45:27,773 [DEBUG] unimproved gap 2017-11-14 09:45:27,773 [DEBUG] Moving from ref0565288.8e5 to ref0565288.8e3 (p=1) 2017-11-14 09:45:27,773 [DEBUG] contig 2017-11-14 09:45:27,773 [DEBUG] who? ref0565288.8e5 ref0565288.8e3 2017-11-14 09:45:27,774 [DEBUG] Grabbing contig between nodes ref0565288.8e5 & ref0565288.8e3 - [trim 0, 0] 2017-11-14 09:45:27,774 [DEBUG] contig 15003 to 15550 2017-11-14 09:45:27,774 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,774 [DEBUG] Moving from ref0565288.8e3 to ref0565288.9e5 (p=1) 2017-11-14 09:45:27,774 [DEBUG] unimproved gap 2017-11-14 09:45:27,774 [DEBUG] Moving from ref0565288.9e5 to ref0565288.9e3 (p=1) 2017-11-14 09:45:27,774 [DEBUG] contig 2017-11-14 09:45:27,774 [DEBUG] who? ref0565288.9e5 ref0565288.9e3 2017-11-14 09:45:27,774 [DEBUG] Grabbing contig between nodes ref0565288.9e5 & ref0565288.9e3 - [trim 0, 0] 2017-11-14 09:45:27,774 [DEBUG] contig 15581 to 15724 2017-11-14 09:45:27,774 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,774 [DEBUG] Moving from ref0565288.9e3 to ref0565288.10e5 (p=1) 2017-11-14 09:45:27,774 [DEBUG] unimproved gap 2017-11-14 09:45:27,775 [DEBUG] Moving from ref0565288.10e5 to ref0565288.10e3 (p=1) 2017-11-14 09:45:27,775 [DEBUG] contig 2017-11-14 09:45:27,775 [DEBUG] who? ref0565288.10e5 ref0565288.10e3 2017-11-14 09:45:27,775 [DEBUG] Grabbing contig between nodes ref0565288.10e5 & ref0565288.10e3 - [trim 0, 0] 2017-11-14 09:45:27,775 [DEBUG] contig 15921 to 15961 2017-11-14 09:45:27,775 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,775 [DEBUG] Moving from ref0565288.10e3 to ref0565288.11e5 (p=1) 2017-11-14 09:45:27,775 [DEBUG] unimproved gap 2017-11-14 09:45:27,775 [DEBUG] Moving from ref0565288.11e5 to ref0565288.11e3 (p=1) 2017-11-14 09:45:27,775 [DEBUG] contig 2017-11-14 09:45:27,775 [DEBUG] who? ref0565288.11e5 ref0565288.11e3 2017-11-14 09:45:27,775 [DEBUG] Grabbing contig between nodes ref0565288.11e5 & ref0565288.11e3 - [trim 0, 0] 2017-11-14 09:45:27,775 [DEBUG] contig 16040 to 16537 2017-11-14 09:45:27,776 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,776 [DEBUG] Moving from ref0565288.11e3 to ref0565288.12e5 (p=1) 2017-11-14 09:45:27,776 [DEBUG] unimproved gap 2017-11-14 09:45:27,776 [DEBUG] Moving from ref0565288.12e5 to ref0565288.12e3 (p=1) 2017-11-14 09:45:27,776 [DEBUG] contig 2017-11-14 09:45:27,776 [DEBUG] who? ref0565288.12e5 ref0565288.12e3 2017-11-14 09:45:27,776 [DEBUG] Grabbing contig between nodes ref0565288.12e5 & ref0565288.12e3 - [trim 0, 0] 2017-11-14 09:45:27,776 [DEBUG] contig 16667 to 17419 2017-11-14 09:45:27,776 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,776 [DEBUG] Moving from ref0565288.12e3 to ref0565288.13e5 (p=1) 2017-11-14 09:45:27,776 [DEBUG] unimproved gap 2017-11-14 09:45:27,776 [DEBUG] Moving from ref0565288.13e5 to ref0565288.13e3 (p=1) 2017-11-14 09:45:27,776 [DEBUG] contig 2017-11-14 09:45:27,777 [DEBUG] who? ref0565288.13e5 ref0565288.13e3 2017-11-14 09:45:27,777 [DEBUG] Grabbing contig between nodes ref0565288.13e5 & ref0565288.13e3 - [trim 0, 0] 2017-11-14 09:45:27,777 [DEBUG] contig 17465 to 22620 2017-11-14 09:45:27,777 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,777 [DEBUG] Moving from ref0565288.13e3 to ref0565288.14e5 (p=1) 2017-11-14 09:45:27,777 [DEBUG] unimproved gap 2017-11-14 09:45:27,777 [DEBUG] Moving from ref0565288.14e5 to ref0565288.14e3 (p=1) 2017-11-14 09:45:27,777 [DEBUG] contig 2017-11-14 09:45:27,777 [DEBUG] who? ref0565288.14e5 ref0565288.14e3 2017-11-14 09:45:27,777 [DEBUG] Grabbing contig between nodes ref0565288.14e5 & ref0565288.14e3 - [trim 0, 0] 2017-11-14 09:45:27,777 [DEBUG] contig 22790 to 23225 2017-11-14 09:45:27,777 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,777 [DEBUG] Moving from ref0565288.14e3 to ref0565288.15e5 (p=1) 2017-11-14 09:45:27,778 [DEBUG] unimproved gap 2017-11-14 09:45:27,778 [DEBUG] Moving from ref0565288.15e5 to ref0565288.15e3 (p=1) 2017-11-14 09:45:27,778 [DEBUG] contig 2017-11-14 09:45:27,778 [DEBUG] who? ref0565288.15e5 ref0565288.15e3 2017-11-14 09:45:27,778 [DEBUG] Grabbing contig between nodes ref0565288.15e5 & ref0565288.15e3 - [trim 0, 0] 2017-11-14 09:45:27,778 [DEBUG] contig 23333 to 23727 2017-11-14 09:45:27,778 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,778 [DEBUG] Moving from ref0565288.15e3 to ref0565288.16e5 (p=1) 2017-11-14 09:45:27,778 [DEBUG] unimproved gap 2017-11-14 09:45:27,778 [DEBUG] Moving from ref0565288.16e5 to ref0565288.16e3 (p=1) 2017-11-14 09:45:27,778 [DEBUG] contig 2017-11-14 09:45:27,778 [DEBUG] who? ref0565288.16e5 ref0565288.16e3 2017-11-14 09:45:27,778 [DEBUG] Grabbing contig between nodes ref0565288.16e5 & ref0565288.16e3 - [trim 0, 0] 2017-11-14 09:45:27,779 [DEBUG] contig 23822 to 25961 2017-11-14 09:45:27,779 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,779 [DEBUG] Moving from ref0565288.16e3 to ref0565288.17e5 (p=1) 2017-11-14 09:45:27,779 [DEBUG] unimproved gap 2017-11-14 09:45:27,779 [DEBUG] Moving from ref0565288.17e5 to ref0565288.17e3 (p=1) 2017-11-14 09:45:27,779 [DEBUG] contig 2017-11-14 09:45:27,779 [DEBUG] who? ref0565288.17e5 ref0565288.17e3 2017-11-14 09:45:27,779 [DEBUG] Grabbing contig between nodes ref0565288.17e5 & ref0565288.17e3 - [trim 0, 0] 2017-11-14 09:45:27,779 [DEBUG] contig 26316 to 28184 2017-11-14 09:45:27,779 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,779 [DEBUG] Moving from ref0565288.17e3 to ref0565288.18e5 (p=1) 2017-11-14 09:45:27,779 [DEBUG] unimproved gap 2017-11-14 09:45:27,780 [DEBUG] Moving from ref0565288.18e5 to ref0565288.18e3 (p=1) 2017-11-14 09:45:27,780 [DEBUG] contig 2017-11-14 09:45:27,780 [DEBUG] who? ref0565288.18e5 ref0565288.18e3 2017-11-14 09:45:27,780 [DEBUG] Grabbing contig between nodes ref0565288.18e5 & ref0565288.18e3 - [trim 0, 0] 2017-11-14 09:45:27,780 [DEBUG] contig 28519 to 28558 2017-11-14 09:45:27,780 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,780 [DEBUG] Moving from ref0565288.18e3 to ref0565288.19e5 (p=1) 2017-11-14 09:45:27,780 [DEBUG] unimproved gap 2017-11-14 09:45:27,780 [DEBUG] Moving from ref0565288.19e5 to ref0565288e3 (p=1) 2017-11-14 09:45:27,780 [DEBUG] contig 2017-11-14 09:45:27,780 [DEBUG] who? ref0565288.19e5 ref0565288e3 2017-11-14 09:45:27,780 [DEBUG] Grabbing contig between nodes ref0565288.19e5 & ref0565288e3 - [trim 0, 0] 2017-11-14 09:45:27,780 [DEBUG] contig 28866 to 30101 2017-11-14 09:45:27,781 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,781 [DEBUG] Contig 28 2017-11-14 09:45:27,783 [DEBUG] Moving from ref0405394e5 to ref0405394.0e3 (p=1) 2017-11-14 09:45:27,783 [DEBUG] contig 2017-11-14 09:45:27,783 [DEBUG] who? ref0405394e5 ref0405394.0e3 2017-11-14 09:45:27,783 [DEBUG] Grabbing contig between nodes ref0405394e5 & ref0405394.0e3 - [trim 0, 0] 2017-11-14 09:45:27,783 [DEBUG] contig 0 to 819 2017-11-14 09:45:27,783 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,783 [DEBUG] Moving from ref0405394.0e3 to ref0405394.1e5 (p=1) 2017-11-14 09:45:27,784 [DEBUG] unimproved gap 2017-11-14 09:45:27,784 [DEBUG] Moving from ref0405394.1e5 to ref0405394.1e3 (p=1) 2017-11-14 09:45:27,784 [DEBUG] contig 2017-11-14 09:45:27,784 [DEBUG] who? ref0405394.1e5 ref0405394.1e3 2017-11-14 09:45:27,784 [DEBUG] Grabbing contig between nodes ref0405394.1e5 & ref0405394.1e3 - [trim 0, 0] 2017-11-14 09:45:27,784 [DEBUG] contig 1270 to 1727 2017-11-14 09:45:27,784 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,784 [DEBUG] Moving from ref0405394.1e3 to ref0405394.2e5 (p=1) 2017-11-14 09:45:27,784 [DEBUG] unimproved gap 2017-11-14 09:45:27,784 [DEBUG] Moving from ref0405394.2e5 to ref0405394.2e3 (p=1) 2017-11-14 09:45:27,784 [DEBUG] contig 2017-11-14 09:45:27,784 [DEBUG] who? ref0405394.2e5 ref0405394.2e3 2017-11-14 09:45:27,784 [DEBUG] Grabbing contig between nodes ref0405394.2e5 & ref0405394.2e3 - [trim 0, 0] 2017-11-14 09:45:27,785 [DEBUG] contig 1923 to 1969 2017-11-14 09:45:27,785 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,785 [DEBUG] Moving from ref0405394.2e3 to ref0405394.3e5 (p=1) 2017-11-14 09:45:27,785 [DEBUG] unimproved gap 2017-11-14 09:45:27,785 [DEBUG] Moving from ref0405394.3e5 to ref0405394.3e3 (p=1) 2017-11-14 09:45:27,785 [DEBUG] contig 2017-11-14 09:45:27,785 [DEBUG] who? ref0405394.3e5 ref0405394.3e3 2017-11-14 09:45:27,785 [DEBUG] Grabbing contig between nodes ref0405394.3e5 & ref0405394.3e3 - [trim 0, 0] 2017-11-14 09:45:27,785 [DEBUG] contig 2114 to 2734 2017-11-14 09:45:27,785 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,785 [DEBUG] Moving from ref0405394.3e3 to ref0405394.4e5 (p=1) 2017-11-14 09:45:27,785 [DEBUG] unimproved gap 2017-11-14 09:45:27,785 [DEBUG] Moving from ref0405394.4e5 to ref0405394.4e3 (p=1) 2017-11-14 09:45:27,786 [DEBUG] contig 2017-11-14 09:45:27,786 [DEBUG] who? ref0405394.4e5 ref0405394.4e3 2017-11-14 09:45:27,786 [DEBUG] Grabbing contig between nodes ref0405394.4e5 & ref0405394.4e3 - [trim 0, 0] 2017-11-14 09:45:27,786 [DEBUG] contig 3072 to 3596 2017-11-14 09:45:27,786 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,786 [DEBUG] Moving from ref0405394.4e3 to ref0405394.5e5 (p=1) 2017-11-14 09:45:27,786 [DEBUG] unimproved gap 2017-11-14 09:45:27,786 [DEBUG] Moving from ref0405394.5e5 to ref0405394.5e3 (p=1) 2017-11-14 09:45:27,786 [DEBUG] contig 2017-11-14 09:45:27,786 [DEBUG] who? ref0405394.5e5 ref0405394.5e3 2017-11-14 09:45:27,786 [DEBUG] Grabbing contig between nodes ref0405394.5e5 & ref0405394.5e3 - [trim 0, 0] 2017-11-14 09:45:27,786 [DEBUG] contig 3884 to 3950 2017-11-14 09:45:27,786 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,787 [DEBUG] Moving from ref0405394.5e3 to ref0405394.6e5 (p=1) 2017-11-14 09:45:27,787 [DEBUG] unimproved gap 2017-11-14 09:45:27,787 [DEBUG] Moving from ref0405394.6e5 to ref0405394.6e3 (p=1) 2017-11-14 09:45:27,787 [DEBUG] contig 2017-11-14 09:45:27,787 [DEBUG] who? ref0405394.6e5 ref0405394.6e3 2017-11-14 09:45:27,787 [DEBUG] Grabbing contig between nodes ref0405394.6e5 & ref0405394.6e3 - [trim 0, 0] 2017-11-14 09:45:27,787 [DEBUG] contig 4447 to 5448 2017-11-14 09:45:27,787 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,787 [DEBUG] Moving from ref0405394.6e3 to ref0405394.7e5 (p=1) 2017-11-14 09:45:27,787 [DEBUG] unimproved gap 2017-11-14 09:45:27,787 [DEBUG] Moving from ref0405394.7e5 to ref0405394.7e3 (p=1) 2017-11-14 09:45:27,787 [DEBUG] contig 2017-11-14 09:45:27,787 [DEBUG] who? ref0405394.7e5 ref0405394.7e3 2017-11-14 09:45:27,788 [DEBUG] Grabbing contig between nodes ref0405394.7e5 & ref0405394.7e3 - [trim 0, 0] 2017-11-14 09:45:27,788 [DEBUG] contig 5861 to 6018 2017-11-14 09:45:27,788 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,788 [DEBUG] Moving from ref0405394.7e3 to ref0405394.8e5 (p=1) 2017-11-14 09:45:27,788 [DEBUG] unimproved gap 2017-11-14 09:45:27,788 [DEBUG] Moving from ref0405394.8e5 to ref0405394.8e3 (p=1) 2017-11-14 09:45:27,788 [DEBUG] contig 2017-11-14 09:45:27,788 [DEBUG] who? ref0405394.8e5 ref0405394.8e3 2017-11-14 09:45:27,788 [DEBUG] Grabbing contig between nodes ref0405394.8e5 & ref0405394.8e3 - [trim 0, 0] 2017-11-14 09:45:27,788 [DEBUG] contig 6193 to 7249 2017-11-14 09:45:27,788 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,788 [DEBUG] Moving from ref0405394.8e3 to ref0405394.9e5 (p=1) 2017-11-14 09:45:27,788 [DEBUG] unimproved gap 2017-11-14 09:45:27,789 [DEBUG] Moving from ref0405394.9e5 to ref0405394.9e3 (p=1) 2017-11-14 09:45:27,789 [DEBUG] contig 2017-11-14 09:45:27,789 [DEBUG] who? ref0405394.9e5 ref0405394.9e3 2017-11-14 09:45:27,789 [DEBUG] Grabbing contig between nodes ref0405394.9e5 & ref0405394.9e3 - [trim 0, 0] 2017-11-14 09:45:27,789 [DEBUG] contig 7370 to 7486 2017-11-14 09:45:27,789 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,789 [DEBUG] Moving from ref0405394.9e3 to ref0405394.10e5 (p=1) 2017-11-14 09:45:27,789 [DEBUG] unimproved gap 2017-11-14 09:45:27,789 [DEBUG] Moving from ref0405394.10e5 to ref0405394.10e3 (p=1) 2017-11-14 09:45:27,789 [DEBUG] contig 2017-11-14 09:45:27,789 [DEBUG] who? ref0405394.10e5 ref0405394.10e3 2017-11-14 09:45:27,789 [DEBUG] Grabbing contig between nodes ref0405394.10e5 & ref0405394.10e3 - [trim 0, 0] 2017-11-14 09:45:27,789 [DEBUG] contig 7613 to 7665 2017-11-14 09:45:27,789 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,790 [DEBUG] Moving from ref0405394.10e3 to ref0405394.11e5 (p=1) 2017-11-14 09:45:27,790 [DEBUG] unimproved gap 2017-11-14 09:45:27,790 [DEBUG] Moving from ref0405394.11e5 to ref0405394.11e3 (p=1) 2017-11-14 09:45:27,790 [DEBUG] contig 2017-11-14 09:45:27,790 [DEBUG] who? ref0405394.11e5 ref0405394.11e3 2017-11-14 09:45:27,790 [DEBUG] Grabbing contig between nodes ref0405394.11e5 & ref0405394.11e3 - [trim 0, 0] 2017-11-14 09:45:27,790 [DEBUG] contig 8197 to 9540 2017-11-14 09:45:27,790 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,790 [DEBUG] Moving from ref0405394.11e3 to ref0405394.12e5 (p=1) 2017-11-14 09:45:27,790 [DEBUG] unimproved gap 2017-11-14 09:45:27,790 [DEBUG] Moving from ref0405394.12e5 to ref0405394.12e3 (p=1) 2017-11-14 09:45:27,790 [DEBUG] contig 2017-11-14 09:45:27,790 [DEBUG] who? ref0405394.12e5 ref0405394.12e3 2017-11-14 09:45:27,791 [DEBUG] Grabbing contig between nodes ref0405394.12e5 & ref0405394.12e3 - [trim 0, 0] 2017-11-14 09:45:27,791 [DEBUG] contig 9782 to 10177 2017-11-14 09:45:27,791 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,791 [DEBUG] Moving from ref0405394.12e3 to ref0405394.13e5 (p=1) 2017-11-14 09:45:27,791 [DEBUG] unimproved gap 2017-11-14 09:45:27,791 [DEBUG] Moving from ref0405394.13e5 to ref0405394.13e3 (p=1) 2017-11-14 09:45:27,791 [DEBUG] contig 2017-11-14 09:45:27,791 [DEBUG] who? ref0405394.13e5 ref0405394.13e3 2017-11-14 09:45:27,791 [DEBUG] Grabbing contig between nodes ref0405394.13e5 & ref0405394.13e3 - [trim 0, 0] 2017-11-14 09:45:27,791 [DEBUG] contig 10389 to 10467 2017-11-14 09:45:27,791 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,791 [DEBUG] Moving from ref0405394.13e3 to ref0405394.14e5 (p=1) 2017-11-14 09:45:27,791 [DEBUG] unimproved gap 2017-11-14 09:45:27,792 [DEBUG] Moving from ref0405394.14e5 to ref0405394.14e3 (p=1) 2017-11-14 09:45:27,792 [DEBUG] contig 2017-11-14 09:45:27,792 [DEBUG] who? ref0405394.14e5 ref0405394.14e3 2017-11-14 09:45:27,792 [DEBUG] Grabbing contig between nodes ref0405394.14e5 & ref0405394.14e3 - [trim 0, 0] 2017-11-14 09:45:27,792 [DEBUG] contig 10492 to 11377 2017-11-14 09:45:27,792 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,792 [DEBUG] Moving from ref0405394.14e3 to ref0405394.15e5 (p=1) 2017-11-14 09:45:27,792 [DEBUG] unimproved gap 2017-11-14 09:45:27,792 [DEBUG] Moving from ref0405394.15e5 to ref0405394.15e3 (p=1) 2017-11-14 09:45:27,792 [DEBUG] contig 2017-11-14 09:45:27,792 [DEBUG] who? ref0405394.15e5 ref0405394.15e3 2017-11-14 09:45:27,792 [DEBUG] Grabbing contig between nodes ref0405394.15e5 & ref0405394.15e3 - [trim 0, 0] 2017-11-14 09:45:27,793 [DEBUG] contig 11441 to 11802 2017-11-14 09:45:27,793 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,793 [DEBUG] Moving from ref0405394.15e3 to ref0405394.16e5 (p=1) 2017-11-14 09:45:27,793 [DEBUG] unimproved gap 2017-11-14 09:45:27,793 [DEBUG] Moving from ref0405394.16e5 to ref0405394.16e3 (p=1) 2017-11-14 09:45:27,793 [DEBUG] contig 2017-11-14 09:45:27,793 [DEBUG] who? ref0405394.16e5 ref0405394.16e3 2017-11-14 09:45:27,793 [DEBUG] Grabbing contig between nodes ref0405394.16e5 & ref0405394.16e3 - [trim 0, 0] 2017-11-14 09:45:27,793 [DEBUG] contig 12061 to 12160 2017-11-14 09:45:27,793 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,793 [DEBUG] Moving from ref0405394.16e3 to ref0405394.17e5 (p=1) 2017-11-14 09:45:27,793 [DEBUG] unimproved gap 2017-11-14 09:45:27,793 [DEBUG] Moving from ref0405394.17e5 to ref0405394.17e3 (p=1) 2017-11-14 09:45:27,794 [DEBUG] contig 2017-11-14 09:45:27,794 [DEBUG] who? ref0405394.17e5 ref0405394.17e3 2017-11-14 09:45:27,794 [DEBUG] Grabbing contig between nodes ref0405394.17e5 & ref0405394.17e3 - [trim 0, 0] 2017-11-14 09:45:27,794 [DEBUG] contig 12194 to 12320 2017-11-14 09:45:27,794 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,794 [DEBUG] Moving from ref0405394.17e3 to ref0405394.18e5 (p=1) 2017-11-14 09:45:27,794 [DEBUG] unimproved gap 2017-11-14 09:45:27,794 [DEBUG] Moving from ref0405394.18e5 to ref0405394.18e3 (p=1) 2017-11-14 09:45:27,794 [DEBUG] contig 2017-11-14 09:45:27,794 [DEBUG] who? ref0405394.18e5 ref0405394.18e3 2017-11-14 09:45:27,794 [DEBUG] Grabbing contig between nodes ref0405394.18e5 & ref0405394.18e3 - [trim 0, 0] 2017-11-14 09:45:27,794 [DEBUG] contig 12586 to 13157 2017-11-14 09:45:27,794 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,795 [DEBUG] Moving from ref0405394.18e3 to ref0405394.19e5 (p=1) 2017-11-14 09:45:27,795 [DEBUG] unimproved gap 2017-11-14 09:45:27,795 [DEBUG] Moving from ref0405394.19e5 to ref0405394e3 (p=1) 2017-11-14 09:45:27,795 [DEBUG] contig 2017-11-14 09:45:27,795 [DEBUG] who? ref0405394.19e5 ref0405394e3 2017-11-14 09:45:27,795 [DEBUG] Grabbing contig between nodes ref0405394.19e5 & ref0405394e3 - [trim 0, 0] 2017-11-14 09:45:27,795 [DEBUG] contig 13336 to 13825 2017-11-14 09:45:27,795 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,795 [DEBUG] Contig 29 2017-11-14 09:45:27,798 [DEBUG] Moving from ref0136693e5 to ref0136693.0e3 (p=1) 2017-11-14 09:45:27,798 [DEBUG] contig 2017-11-14 09:45:27,798 [DEBUG] who? ref0136693e5 ref0136693.0e3 2017-11-14 09:45:27,798 [DEBUG] Grabbing contig between nodes ref0136693e5 & ref0136693.0e3 - [trim 0, 0] 2017-11-14 09:45:27,798 [DEBUG] contig 0 to 98 2017-11-14 09:45:27,798 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,798 [DEBUG] Moving from ref0136693.0e3 to ref0136693.1e5 (p=1) 2017-11-14 09:45:27,798 [DEBUG] unimproved gap 2017-11-14 09:45:27,798 [DEBUG] Moving from ref0136693.1e5 to ref0136693.1e3 (p=1) 2017-11-14 09:45:27,798 [DEBUG] contig 2017-11-14 09:45:27,798 [DEBUG] who? ref0136693.1e5 ref0136693.1e3 2017-11-14 09:45:27,799 [DEBUG] Grabbing contig between nodes ref0136693.1e5 & ref0136693.1e3 - [trim 0, 0] 2017-11-14 09:45:27,799 [DEBUG] contig 228 to 936 2017-11-14 09:45:27,799 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,799 [DEBUG] Moving from ref0136693.1e3 to ref0136693.2e5 (p=1) 2017-11-14 09:45:27,799 [DEBUG] unimproved gap 2017-11-14 09:45:27,799 [DEBUG] Moving from ref0136693.2e5 to ref0136693.2e3 (p=1) 2017-11-14 09:45:27,799 [DEBUG] contig 2017-11-14 09:45:27,799 [DEBUG] who? ref0136693.2e5 ref0136693.2e3 2017-11-14 09:45:27,799 [DEBUG] Grabbing contig between nodes ref0136693.2e5 & ref0136693.2e3 - [trim 0, 0] 2017-11-14 09:45:27,799 [DEBUG] contig 1230 to 1533 2017-11-14 09:45:27,799 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,799 [DEBUG] Moving from ref0136693.2e3 to ref0136693.3e5 (p=1) 2017-11-14 09:45:27,800 [DEBUG] unimproved gap 2017-11-14 09:45:27,800 [DEBUG] Moving from ref0136693.3e5 to ref0136693.3e3 (p=1) 2017-11-14 09:45:27,800 [DEBUG] contig 2017-11-14 09:45:27,800 [DEBUG] who? ref0136693.3e5 ref0136693.3e3 2017-11-14 09:45:27,800 [DEBUG] Grabbing contig between nodes ref0136693.3e5 & ref0136693.3e3 - [trim 0, 0] 2017-11-14 09:45:27,800 [DEBUG] contig 1938 to 1976 2017-11-14 09:45:27,800 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,800 [DEBUG] Moving from ref0136693.3e3 to ref0136693.4e5 (p=1) 2017-11-14 09:45:27,800 [DEBUG] unimproved gap 2017-11-14 09:45:27,800 [DEBUG] Moving from ref0136693.4e5 to ref0136693.4e3 (p=1) 2017-11-14 09:45:27,800 [DEBUG] contig 2017-11-14 09:45:27,800 [DEBUG] who? ref0136693.4e5 ref0136693.4e3 2017-11-14 09:45:27,800 [DEBUG] Grabbing contig between nodes ref0136693.4e5 & ref0136693.4e3 - [trim 0, 0] 2017-11-14 09:45:27,801 [DEBUG] contig 2169 to 2439 2017-11-14 09:45:27,801 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,801 [DEBUG] Moving from ref0136693.4e3 to ref0136693.5e5 (p=1) 2017-11-14 09:45:27,801 [DEBUG] unimproved gap 2017-11-14 09:45:27,801 [DEBUG] Moving from ref0136693.5e5 to ref0136693.5e3 (p=1) 2017-11-14 09:45:27,801 [DEBUG] contig 2017-11-14 09:45:27,801 [DEBUG] who? ref0136693.5e5 ref0136693.5e3 2017-11-14 09:45:27,801 [DEBUG] Grabbing contig between nodes ref0136693.5e5 & ref0136693.5e3 - [trim 0, 0] 2017-11-14 09:45:27,801 [DEBUG] contig 2519 to 2664 2017-11-14 09:45:27,801 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,801 [DEBUG] Moving from ref0136693.5e3 to ref0136693.6e5 (p=1) 2017-11-14 09:45:27,801 [DEBUG] unimproved gap 2017-11-14 09:45:27,801 [DEBUG] Moving from ref0136693.6e5 to ref0136693.6e3 (p=1) 2017-11-14 09:45:27,802 [DEBUG] contig 2017-11-14 09:45:27,802 [DEBUG] who? ref0136693.6e5 ref0136693.6e3 2017-11-14 09:45:27,802 [DEBUG] Grabbing contig between nodes ref0136693.6e5 & ref0136693.6e3 - [trim 0, 0] 2017-11-14 09:45:27,802 [DEBUG] contig 2689 to 3056 2017-11-14 09:45:27,802 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,802 [DEBUG] Moving from ref0136693.6e3 to ref0136693.7e5 (p=1) 2017-11-14 09:45:27,802 [DEBUG] unimproved gap 2017-11-14 09:45:27,802 [DEBUG] Moving from ref0136693.7e5 to ref0136693.7e3 (p=1) 2017-11-14 09:45:27,802 [DEBUG] contig 2017-11-14 09:45:27,802 [DEBUG] who? ref0136693.7e5 ref0136693.7e3 2017-11-14 09:45:27,802 [DEBUG] Grabbing contig between nodes ref0136693.7e5 & ref0136693.7e3 - [trim 0, 0] 2017-11-14 09:45:27,802 [DEBUG] contig 3166 to 3212 2017-11-14 09:45:27,802 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,803 [DEBUG] Moving from ref0136693.7e3 to ref0136693.8e5 (p=1) 2017-11-14 09:45:27,803 [DEBUG] unimproved gap 2017-11-14 09:45:27,803 [DEBUG] Moving from ref0136693.8e5 to ref0136693.8e3 (p=1) 2017-11-14 09:45:27,803 [DEBUG] contig 2017-11-14 09:45:27,803 [DEBUG] who? ref0136693.8e5 ref0136693.8e3 2017-11-14 09:45:27,803 [DEBUG] Grabbing contig between nodes ref0136693.8e5 & ref0136693.8e3 - [trim 0, 0] 2017-11-14 09:45:27,803 [DEBUG] contig 3688 to 4956 2017-11-14 09:45:27,803 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,803 [DEBUG] Moving from ref0136693.8e3 to ref0136693.9e5 (p=1) 2017-11-14 09:45:27,803 [DEBUG] unimproved gap 2017-11-14 09:45:27,803 [DEBUG] Moving from ref0136693.9e5 to ref0136693.9e3 (p=1) 2017-11-14 09:45:27,803 [DEBUG] contig 2017-11-14 09:45:27,803 [DEBUG] who? ref0136693.9e5 ref0136693.9e3 2017-11-14 09:45:27,804 [DEBUG] Grabbing contig between nodes ref0136693.9e5 & ref0136693.9e3 - [trim 0, 0] 2017-11-14 09:45:27,804 [DEBUG] contig 5238 to 6560 2017-11-14 09:45:27,804 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,804 [DEBUG] Moving from ref0136693.9e3 to ref0136693.10e5 (p=1) 2017-11-14 09:45:27,804 [DEBUG] unimproved gap 2017-11-14 09:45:27,804 [DEBUG] Moving from ref0136693.10e5 to ref0136693.10e3 (p=1) 2017-11-14 09:45:27,804 [DEBUG] contig 2017-11-14 09:45:27,804 [DEBUG] who? ref0136693.10e5 ref0136693.10e3 2017-11-14 09:45:27,804 [DEBUG] Grabbing contig between nodes ref0136693.10e5 & ref0136693.10e3 - [trim 0, 0] 2017-11-14 09:45:27,804 [DEBUG] contig 7282 to 8087 2017-11-14 09:45:27,804 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,804 [DEBUG] Moving from ref0136693.10e3 to ref0136693.11e5 (p=1) 2017-11-14 09:45:27,805 [DEBUG] unimproved gap 2017-11-14 09:45:27,805 [DEBUG] Moving from ref0136693.11e5 to ref0136693.11e3 (p=1) 2017-11-14 09:45:27,805 [DEBUG] contig 2017-11-14 09:45:27,805 [DEBUG] who? ref0136693.11e5 ref0136693.11e3 2017-11-14 09:45:27,805 [DEBUG] Grabbing contig between nodes ref0136693.11e5 & ref0136693.11e3 - [trim 0, 0] 2017-11-14 09:45:27,805 [DEBUG] contig 8510 to 8896 2017-11-14 09:45:27,805 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,805 [DEBUG] Moving from ref0136693.11e3 to ref0136693.12e5 (p=1) 2017-11-14 09:45:27,805 [DEBUG] unimproved gap 2017-11-14 09:45:27,805 [DEBUG] Moving from ref0136693.12e5 to ref0136693.12e3 (p=1) 2017-11-14 09:45:27,805 [DEBUG] contig 2017-11-14 09:45:27,805 [DEBUG] who? ref0136693.12e5 ref0136693.12e3 2017-11-14 09:45:27,805 [DEBUG] Grabbing contig between nodes ref0136693.12e5 & ref0136693.12e3 - [trim 0, 0] 2017-11-14 09:45:27,805 [DEBUG] contig 8936 to 8972 2017-11-14 09:45:27,806 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,806 [DEBUG] Moving from ref0136693.12e3 to ref0136693.13e5 (p=1) 2017-11-14 09:45:27,806 [DEBUG] unimproved gap 2017-11-14 09:45:27,806 [DEBUG] Moving from ref0136693.13e5 to ref0136693.13e3 (p=1) 2017-11-14 09:45:27,806 [DEBUG] contig 2017-11-14 09:45:27,806 [DEBUG] who? ref0136693.13e5 ref0136693.13e3 2017-11-14 09:45:27,806 [DEBUG] Grabbing contig between nodes ref0136693.13e5 & ref0136693.13e3 - [trim 0, 0] 2017-11-14 09:45:27,806 [DEBUG] contig 9077 to 9136 2017-11-14 09:45:27,806 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,806 [DEBUG] Moving from ref0136693.13e3 to ref0136693.14e5 (p=1) 2017-11-14 09:45:27,806 [DEBUG] unimproved gap 2017-11-14 09:45:27,806 [DEBUG] Moving from ref0136693.14e5 to ref0136693.14e3 (p=1) 2017-11-14 09:45:27,806 [DEBUG] contig 2017-11-14 09:45:27,807 [DEBUG] who? ref0136693.14e5 ref0136693.14e3 2017-11-14 09:45:27,807 [DEBUG] Grabbing contig between nodes ref0136693.14e5 & ref0136693.14e3 - [trim 0, 0] 2017-11-14 09:45:27,807 [DEBUG] contig 9179 to 11290 2017-11-14 09:45:27,807 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,807 [DEBUG] Moving from ref0136693.14e3 to ref0136693.15e5 (p=1) 2017-11-14 09:45:27,807 [DEBUG] unimproved gap 2017-11-14 09:45:27,807 [DEBUG] Moving from ref0136693.15e5 to ref0136693.15e3 (p=1) 2017-11-14 09:45:27,807 [DEBUG] contig 2017-11-14 09:45:27,807 [DEBUG] who? ref0136693.15e5 ref0136693.15e3 2017-11-14 09:45:27,807 [DEBUG] Grabbing contig between nodes ref0136693.15e5 & ref0136693.15e3 - [trim 0, 0] 2017-11-14 09:45:27,807 [DEBUG] contig 11333 to 11361 2017-11-14 09:45:27,807 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,807 [DEBUG] Moving from ref0136693.15e3 to ref0136693.16e5 (p=1) 2017-11-14 09:45:27,808 [DEBUG] unimproved gap 2017-11-14 09:45:27,808 [DEBUG] Moving from ref0136693.16e5 to ref0136693.16e3 (p=1) 2017-11-14 09:45:27,808 [DEBUG] contig 2017-11-14 09:45:27,808 [DEBUG] who? ref0136693.16e5 ref0136693.16e3 2017-11-14 09:45:27,808 [DEBUG] Grabbing contig between nodes ref0136693.16e5 & ref0136693.16e3 - [trim 0, 0] 2017-11-14 09:45:27,808 [DEBUG] contig 11397 to 12126 2017-11-14 09:45:27,808 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,808 [DEBUG] Moving from ref0136693.16e3 to ref0136693.17e5 (p=1) 2017-11-14 09:45:27,808 [DEBUG] unimproved gap 2017-11-14 09:45:27,808 [DEBUG] Moving from ref0136693.17e5 to ref0136693.17e3 (p=1) 2017-11-14 09:45:27,808 [DEBUG] contig 2017-11-14 09:45:27,808 [DEBUG] who? ref0136693.17e5 ref0136693.17e3 2017-11-14 09:45:27,808 [DEBUG] Grabbing contig between nodes ref0136693.17e5 & ref0136693.17e3 - [trim 0, 0] 2017-11-14 09:45:27,809 [DEBUG] contig 12384 to 13207 2017-11-14 09:45:27,809 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,809 [DEBUG] Moving from ref0136693.17e3 to ref0136693.18e5 (p=1) 2017-11-14 09:45:27,809 [DEBUG] unimproved gap 2017-11-14 09:45:27,809 [DEBUG] Moving from ref0136693.18e5 to ref0136693.18e3 (p=1) 2017-11-14 09:45:27,809 [DEBUG] contig 2017-11-14 09:45:27,809 [DEBUG] who? ref0136693.18e5 ref0136693.18e3 2017-11-14 09:45:27,809 [DEBUG] Grabbing contig between nodes ref0136693.18e5 & ref0136693.18e3 - [trim 0, 0] 2017-11-14 09:45:27,809 [DEBUG] contig 13293 to 13740 2017-11-14 09:45:27,809 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,809 [DEBUG] Moving from ref0136693.18e3 to ref0136693.19e5 (p=1) 2017-11-14 09:45:27,809 [DEBUG] unimproved gap 2017-11-14 09:45:27,809 [DEBUG] Moving from ref0136693.19e5 to ref0136693e3 (p=1) 2017-11-14 09:45:27,810 [DEBUG] contig 2017-11-14 09:45:27,810 [DEBUG] who? ref0136693.19e5 ref0136693e3 2017-11-14 09:45:27,810 [DEBUG] Grabbing contig between nodes ref0136693.19e5 & ref0136693e3 - [trim 0, 0] 2017-11-14 09:45:27,810 [DEBUG] contig 14217 to 16252 2017-11-14 09:45:27,810 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,810 [DEBUG] Contig 30 2017-11-14 09:45:27,812 [DEBUG] Moving from ref0659141e5 to ref0659141.0e3 (p=1) 2017-11-14 09:45:27,812 [DEBUG] contig 2017-11-14 09:45:27,813 [DEBUG] who? ref0659141e5 ref0659141.0e3 2017-11-14 09:45:27,813 [DEBUG] Grabbing contig between nodes ref0659141e5 & ref0659141.0e3 - [trim 0, 0] 2017-11-14 09:45:27,813 [DEBUG] contig 0 to 70 2017-11-14 09:45:27,813 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,813 [DEBUG] Moving from ref0659141.0e3 to ref0659141.1e5 (p=1) 2017-11-14 09:45:27,813 [DEBUG] unimproved gap 2017-11-14 09:45:27,813 [DEBUG] Moving from ref0659141.1e5 to ref0659141.1e3 (p=1) 2017-11-14 09:45:27,813 [DEBUG] contig 2017-11-14 09:45:27,813 [DEBUG] who? ref0659141.1e5 ref0659141.1e3 2017-11-14 09:45:27,813 [DEBUG] Grabbing contig between nodes ref0659141.1e5 & ref0659141.1e3 - [trim 0, 0] 2017-11-14 09:45:27,813 [DEBUG] contig 417 to 731 2017-11-14 09:45:27,813 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,813 [DEBUG] Moving from ref0659141.1e3 to ref0659141.2e5 (p=1) 2017-11-14 09:45:27,813 [DEBUG] unimproved gap 2017-11-14 09:45:27,814 [DEBUG] Moving from ref0659141.2e5 to ref0659141.2e3 (p=1) 2017-11-14 09:45:27,814 [DEBUG] contig 2017-11-14 09:45:27,814 [DEBUG] who? ref0659141.2e5 ref0659141.2e3 2017-11-14 09:45:27,814 [DEBUG] Grabbing contig between nodes ref0659141.2e5 & ref0659141.2e3 - [trim 0, 0] 2017-11-14 09:45:27,814 [DEBUG] contig 1106 to 1149 2017-11-14 09:45:27,814 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,814 [DEBUG] Moving from ref0659141.2e3 to ref0659141.3e5 (p=1) 2017-11-14 09:45:27,814 [DEBUG] unimproved gap 2017-11-14 09:45:27,814 [DEBUG] Moving from ref0659141.3e5 to ref0659141.3e3 (p=1) 2017-11-14 09:45:27,814 [DEBUG] contig 2017-11-14 09:45:27,814 [DEBUG] who? ref0659141.3e5 ref0659141.3e3 2017-11-14 09:45:27,814 [DEBUG] Grabbing contig between nodes ref0659141.3e5 & ref0659141.3e3 - [trim 0, 0] 2017-11-14 09:45:27,814 [DEBUG] contig 1457 to 1732 2017-11-14 09:45:27,815 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,815 [DEBUG] Moving from ref0659141.3e3 to ref0659141.4e5 (p=1) 2017-11-14 09:45:27,815 [DEBUG] unimproved gap 2017-11-14 09:45:27,815 [DEBUG] Moving from ref0659141.4e5 to ref0659141.4e3 (p=1) 2017-11-14 09:45:27,815 [DEBUG] contig 2017-11-14 09:45:27,815 [DEBUG] who? ref0659141.4e5 ref0659141.4e3 2017-11-14 09:45:27,815 [DEBUG] Grabbing contig between nodes ref0659141.4e5 & ref0659141.4e3 - [trim 0, 0] 2017-11-14 09:45:27,815 [DEBUG] contig 1974 to 2673 2017-11-14 09:45:27,815 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,815 [DEBUG] Moving from ref0659141.4e3 to ref0659141.5e5 (p=1) 2017-11-14 09:45:27,815 [DEBUG] unimproved gap 2017-11-14 09:45:27,815 [DEBUG] Moving from ref0659141.5e5 to ref0659141.5e3 (p=1) 2017-11-14 09:45:27,815 [DEBUG] contig 2017-11-14 09:45:27,816 [DEBUG] who? ref0659141.5e5 ref0659141.5e3 2017-11-14 09:45:27,816 [DEBUG] Grabbing contig between nodes ref0659141.5e5 & ref0659141.5e3 - [trim 0, 0] 2017-11-14 09:45:27,816 [DEBUG] contig 3369 to 4234 2017-11-14 09:45:27,816 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,816 [DEBUG] Moving from ref0659141.5e3 to ref0659141.6e5 (p=1) 2017-11-14 09:45:27,816 [DEBUG] unimproved gap 2017-11-14 09:45:27,816 [DEBUG] Moving from ref0659141.6e5 to ref0659141.6e3 (p=1) 2017-11-14 09:45:27,816 [DEBUG] contig 2017-11-14 09:45:27,816 [DEBUG] who? ref0659141.6e5 ref0659141.6e3 2017-11-14 09:45:27,816 [DEBUG] Grabbing contig between nodes ref0659141.6e5 & ref0659141.6e3 - [trim 0, 0] 2017-11-14 09:45:27,816 [DEBUG] contig 4372 to 4931 2017-11-14 09:45:27,816 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,816 [DEBUG] Moving from ref0659141.6e3 to ref0659141.7e5 (p=1) 2017-11-14 09:45:27,817 [DEBUG] unimproved gap 2017-11-14 09:45:27,817 [DEBUG] Moving from ref0659141.7e5 to ref0659141.7e3 (p=1) 2017-11-14 09:45:27,817 [DEBUG] contig 2017-11-14 09:45:27,817 [DEBUG] who? ref0659141.7e5 ref0659141.7e3 2017-11-14 09:45:27,817 [DEBUG] Grabbing contig between nodes ref0659141.7e5 & ref0659141.7e3 - [trim 0, 0] 2017-11-14 09:45:27,817 [DEBUG] contig 4976 to 5030 2017-11-14 09:45:27,817 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,817 [DEBUG] Moving from ref0659141.7e3 to ref0659141.8e5 (p=1) 2017-11-14 09:45:27,817 [DEBUG] unimproved gap 2017-11-14 09:45:27,817 [DEBUG] Moving from ref0659141.8e5 to ref0659141.8e3 (p=1) 2017-11-14 09:45:27,817 [DEBUG] contig 2017-11-14 09:45:27,817 [DEBUG] who? ref0659141.8e5 ref0659141.8e3 2017-11-14 09:45:27,817 [DEBUG] Grabbing contig between nodes ref0659141.8e5 & ref0659141.8e3 - [trim 0, 0] 2017-11-14 09:45:27,818 [DEBUG] contig 5130 to 5168 2017-11-14 09:45:27,818 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,818 [DEBUG] Moving from ref0659141.8e3 to ref0659141.9e5 (p=1) 2017-11-14 09:45:27,818 [DEBUG] unimproved gap 2017-11-14 09:45:27,818 [DEBUG] Moving from ref0659141.9e5 to ref0659141.9e3 (p=1) 2017-11-14 09:45:27,818 [DEBUG] contig 2017-11-14 09:45:27,818 [DEBUG] who? ref0659141.9e5 ref0659141.9e3 2017-11-14 09:45:27,818 [DEBUG] Grabbing contig between nodes ref0659141.9e5 & ref0659141.9e3 - [trim 0, 0] 2017-11-14 09:45:27,818 [DEBUG] contig 5225 to 5449 2017-11-14 09:45:27,818 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,818 [DEBUG] Moving from ref0659141.9e3 to ref0659141.10e5 (p=1) 2017-11-14 09:45:27,818 [DEBUG] unimproved gap 2017-11-14 09:45:27,818 [DEBUG] Moving from ref0659141.10e5 to ref0659141.10e3 (p=1) 2017-11-14 09:45:27,818 [DEBUG] contig 2017-11-14 09:45:27,819 [DEBUG] who? ref0659141.10e5 ref0659141.10e3 2017-11-14 09:45:27,819 [DEBUG] Grabbing contig between nodes ref0659141.10e5 & ref0659141.10e3 - [trim 0, 0] 2017-11-14 09:45:27,819 [DEBUG] contig 5681 to 9917 2017-11-14 09:45:27,819 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,819 [DEBUG] Moving from ref0659141.10e3 to ref0659141.11e5 (p=1) 2017-11-14 09:45:27,819 [DEBUG] unimproved gap 2017-11-14 09:45:27,819 [DEBUG] Moving from ref0659141.11e5 to ref0659141.11e3 (p=1) 2017-11-14 09:45:27,819 [DEBUG] contig 2017-11-14 09:45:27,819 [DEBUG] who? ref0659141.11e5 ref0659141.11e3 2017-11-14 09:45:27,819 [DEBUG] Grabbing contig between nodes ref0659141.11e5 & ref0659141.11e3 - [trim 0, 0] 2017-11-14 09:45:27,819 [DEBUG] contig 9982 to 10229 2017-11-14 09:45:27,819 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,819 [DEBUG] Moving from ref0659141.11e3 to ref0659141.12e5 (p=1) 2017-11-14 09:45:27,820 [DEBUG] unimproved gap 2017-11-14 09:45:27,820 [DEBUG] Moving from ref0659141.12e5 to ref0659141.12e3 (p=1) 2017-11-14 09:45:27,820 [DEBUG] contig 2017-11-14 09:45:27,820 [DEBUG] who? ref0659141.12e5 ref0659141.12e3 2017-11-14 09:45:27,820 [DEBUG] Grabbing contig between nodes ref0659141.12e5 & ref0659141.12e3 - [trim 0, 0] 2017-11-14 09:45:27,820 [DEBUG] contig 10699 to 10746 2017-11-14 09:45:27,820 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,820 [DEBUG] Moving from ref0659141.12e3 to ref0659141.13e5 (p=1) 2017-11-14 09:45:27,820 [DEBUG] unimproved gap 2017-11-14 09:45:27,820 [DEBUG] Moving from ref0659141.13e5 to ref0659141.13e3 (p=1) 2017-11-14 09:45:27,820 [DEBUG] contig 2017-11-14 09:45:27,820 [DEBUG] who? ref0659141.13e5 ref0659141.13e3 2017-11-14 09:45:27,820 [DEBUG] Grabbing contig between nodes ref0659141.13e5 & ref0659141.13e3 - [trim 0, 0] 2017-11-14 09:45:27,821 [DEBUG] contig 10824 to 11050 2017-11-14 09:45:27,821 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,821 [DEBUG] Moving from ref0659141.13e3 to ref0659141.14e5 (p=1) 2017-11-14 09:45:27,821 [DEBUG] unimproved gap 2017-11-14 09:45:27,821 [DEBUG] Moving from ref0659141.14e5 to ref0659141.14e3 (p=1) 2017-11-14 09:45:27,821 [DEBUG] contig 2017-11-14 09:45:27,821 [DEBUG] who? ref0659141.14e5 ref0659141.14e3 2017-11-14 09:45:27,821 [DEBUG] Grabbing contig between nodes ref0659141.14e5 & ref0659141.14e3 - [trim 0, 0] 2017-11-14 09:45:27,821 [DEBUG] contig 11148 to 11385 2017-11-14 09:45:27,821 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,821 [DEBUG] Moving from ref0659141.14e3 to ref0659141.15e5 (p=1) 2017-11-14 09:45:27,821 [DEBUG] unimproved gap 2017-11-14 09:45:27,821 [DEBUG] Moving from ref0659141.15e5 to ref0659141.15e3 (p=1) 2017-11-14 09:45:27,822 [DEBUG] contig 2017-11-14 09:45:27,822 [DEBUG] who? ref0659141.15e5 ref0659141.15e3 2017-11-14 09:45:27,822 [DEBUG] Grabbing contig between nodes ref0659141.15e5 & ref0659141.15e3 - [trim 0, 0] 2017-11-14 09:45:27,822 [DEBUG] contig 11460 to 12000 2017-11-14 09:45:27,822 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,822 [DEBUG] Moving from ref0659141.15e3 to ref0659141.16e5 (p=1) 2017-11-14 09:45:27,822 [DEBUG] unimproved gap 2017-11-14 09:45:27,822 [DEBUG] Moving from ref0659141.16e5 to ref0659141.16e3 (p=1) 2017-11-14 09:45:27,822 [DEBUG] contig 2017-11-14 09:45:27,822 [DEBUG] who? ref0659141.16e5 ref0659141.16e3 2017-11-14 09:45:27,822 [DEBUG] Grabbing contig between nodes ref0659141.16e5 & ref0659141.16e3 - [trim 0, 0] 2017-11-14 09:45:27,822 [DEBUG] contig 12094 to 14675 2017-11-14 09:45:27,822 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,823 [DEBUG] Moving from ref0659141.16e3 to ref0659141.17e5 (p=1) 2017-11-14 09:45:27,823 [DEBUG] unimproved gap 2017-11-14 09:45:27,823 [DEBUG] Moving from ref0659141.17e5 to ref0659141.17e3 (p=1) 2017-11-14 09:45:27,823 [DEBUG] contig 2017-11-14 09:45:27,823 [DEBUG] who? ref0659141.17e5 ref0659141.17e3 2017-11-14 09:45:27,823 [DEBUG] Grabbing contig between nodes ref0659141.17e5 & ref0659141.17e3 - [trim 0, 0] 2017-11-14 09:45:27,823 [DEBUG] contig 15060 to 15293 2017-11-14 09:45:27,823 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,823 [DEBUG] Moving from ref0659141.17e3 to ref0659141.18e5 (p=1) 2017-11-14 09:45:27,823 [DEBUG] unimproved gap 2017-11-14 09:45:27,823 [DEBUG] Moving from ref0659141.18e5 to ref0659141.18e3 (p=1) 2017-11-14 09:45:27,823 [DEBUG] contig 2017-11-14 09:45:27,823 [DEBUG] who? ref0659141.18e5 ref0659141.18e3 2017-11-14 09:45:27,823 [DEBUG] Grabbing contig between nodes ref0659141.18e5 & ref0659141.18e3 - [trim 0, 0] 2017-11-14 09:45:27,824 [DEBUG] contig 15383 to 16717 2017-11-14 09:45:27,824 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,824 [DEBUG] Moving from ref0659141.18e3 to ref0659141.19e5 (p=1) 2017-11-14 09:45:27,824 [DEBUG] unimproved gap 2017-11-14 09:45:27,824 [DEBUG] Moving from ref0659141.19e5 to ref0659141e3 (p=1) 2017-11-14 09:45:27,824 [DEBUG] contig 2017-11-14 09:45:27,824 [DEBUG] who? ref0659141.19e5 ref0659141e3 2017-11-14 09:45:27,824 [DEBUG] Grabbing contig between nodes ref0659141.19e5 & ref0659141e3 - [trim 0, 0] 2017-11-14 09:45:27,824 [DEBUG] contig 16793 to 16871 2017-11-14 09:45:27,824 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,824 [DEBUG] Contig 31 2017-11-14 09:45:27,827 [DEBUG] Moving from ref0590445e3 to ref0590445.19e5 (p=1) 2017-11-14 09:45:27,827 [DEBUG] contig 2017-11-14 09:45:27,827 [DEBUG] who? ref0590445.19e5 ref0590445e3 2017-11-14 09:45:27,827 [DEBUG] Grabbing contig between nodes ref0590445.19e5 & ref0590445e3 - [trim 0, 0] 2017-11-14 09:45:27,827 [DEBUG] contig 20941 to 20999 2017-11-14 09:45:27,827 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,827 [DEBUG] Moving from ref0590445.19e5 to ref0590445.18e3 (p=1) 2017-11-14 09:45:27,827 [DEBUG] unimproved gap 2017-11-14 09:45:27,827 [DEBUG] Moving from ref0590445.18e3 to ref0590445.18e5 (p=1) 2017-11-14 09:45:27,827 [DEBUG] contig 2017-11-14 09:45:27,828 [DEBUG] who? ref0590445.18e5 ref0590445.18e3 2017-11-14 09:45:27,828 [DEBUG] Grabbing contig between nodes ref0590445.18e5 & ref0590445.18e3 - [trim 0, 0] 2017-11-14 09:45:27,828 [DEBUG] contig 20338 to 20476 2017-11-14 09:45:27,828 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,828 [DEBUG] Moving from ref0590445.18e5 to ref0590445.17e3 (p=1) 2017-11-14 09:45:27,828 [DEBUG] unimproved gap 2017-11-14 09:45:27,828 [DEBUG] Moving from ref0590445.17e3 to ref0590445.17e5 (p=1) 2017-11-14 09:45:27,828 [DEBUG] contig 2017-11-14 09:45:27,828 [DEBUG] who? ref0590445.17e5 ref0590445.17e3 2017-11-14 09:45:27,828 [DEBUG] Grabbing contig between nodes ref0590445.17e5 & ref0590445.17e3 - [trim 0, 0] 2017-11-14 09:45:27,828 [DEBUG] contig 20043 to 20114 2017-11-14 09:45:27,828 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,828 [DEBUG] Moving from ref0590445.17e5 to ref0590445.16e3 (p=1) 2017-11-14 09:45:27,829 [DEBUG] unimproved gap 2017-11-14 09:45:27,829 [DEBUG] Moving from ref0590445.16e3 to ref0590445.16e5 (p=1) 2017-11-14 09:45:27,829 [DEBUG] contig 2017-11-14 09:45:27,829 [DEBUG] who? ref0590445.16e5 ref0590445.16e3 2017-11-14 09:45:27,829 [DEBUG] Grabbing contig between nodes ref0590445.16e5 & ref0590445.16e3 - [trim 0, 0] 2017-11-14 09:45:27,829 [DEBUG] contig 18922 to 19682 2017-11-14 09:45:27,829 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,829 [DEBUG] Moving from ref0590445.16e5 to ref0590445.15e3 (p=1) 2017-11-14 09:45:27,829 [DEBUG] unimproved gap 2017-11-14 09:45:27,829 [DEBUG] Moving from ref0590445.15e3 to ref0590445.15e5 (p=1) 2017-11-14 09:45:27,829 [DEBUG] contig 2017-11-14 09:45:27,829 [DEBUG] who? ref0590445.15e5 ref0590445.15e3 2017-11-14 09:45:27,829 [DEBUG] Grabbing contig between nodes ref0590445.15e5 & ref0590445.15e3 - [trim 0, 0] 2017-11-14 09:45:27,830 [DEBUG] contig 18715 to 18793 2017-11-14 09:45:27,830 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,830 [DEBUG] Moving from ref0590445.15e5 to ref0590445.14e3 (p=1) 2017-11-14 09:45:27,830 [DEBUG] unimproved gap 2017-11-14 09:45:27,830 [DEBUG] Moving from ref0590445.14e3 to ref0590445.14e5 (p=1) 2017-11-14 09:45:27,830 [DEBUG] contig 2017-11-14 09:45:27,830 [DEBUG] who? ref0590445.14e5 ref0590445.14e3 2017-11-14 09:45:27,830 [DEBUG] Grabbing contig between nodes ref0590445.14e5 & ref0590445.14e3 - [trim 0, 0] 2017-11-14 09:45:27,830 [DEBUG] contig 18560 to 18596 2017-11-14 09:45:27,830 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,830 [DEBUG] Moving from ref0590445.14e5 to ref0590445.13e3 (p=1) 2017-11-14 09:45:27,830 [DEBUG] unimproved gap 2017-11-14 09:45:27,830 [DEBUG] Moving from ref0590445.13e3 to ref0590445.13e5 (p=1) 2017-11-14 09:45:27,830 [DEBUG] contig 2017-11-14 09:45:27,831 [DEBUG] who? ref0590445.13e5 ref0590445.13e3 2017-11-14 09:45:27,831 [DEBUG] Grabbing contig between nodes ref0590445.13e5 & ref0590445.13e3 - [trim 0, 0] 2017-11-14 09:45:27,831 [DEBUG] contig 18452 to 18503 2017-11-14 09:45:27,831 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,831 [DEBUG] Moving from ref0590445.13e5 to ref0590445.12e3 (p=1) 2017-11-14 09:45:27,831 [DEBUG] unimproved gap 2017-11-14 09:45:27,831 [DEBUG] Moving from ref0590445.12e3 to ref0590445.12e5 (p=1) 2017-11-14 09:45:27,831 [DEBUG] contig 2017-11-14 09:45:27,831 [DEBUG] who? ref0590445.12e5 ref0590445.12e3 2017-11-14 09:45:27,831 [DEBUG] Grabbing contig between nodes ref0590445.12e5 & ref0590445.12e3 - [trim 0, 0] 2017-11-14 09:45:27,831 [DEBUG] contig 15638 to 18212 2017-11-14 09:45:27,831 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,831 [DEBUG] Moving from ref0590445.12e5 to ref0590445.11e3 (p=1) 2017-11-14 09:45:27,832 [DEBUG] unimproved gap 2017-11-14 09:45:27,832 [DEBUG] Moving from ref0590445.11e3 to ref0590445.11e5 (p=1) 2017-11-14 09:45:27,832 [DEBUG] contig 2017-11-14 09:45:27,832 [DEBUG] who? ref0590445.11e5 ref0590445.11e3 2017-11-14 09:45:27,832 [DEBUG] Grabbing contig between nodes ref0590445.11e5 & ref0590445.11e3 - [trim 0, 0] 2017-11-14 09:45:27,832 [DEBUG] contig 12983 to 15360 2017-11-14 09:45:27,832 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,832 [DEBUG] Moving from ref0590445.11e5 to ref0590445.10e3 (p=1) 2017-11-14 09:45:27,832 [DEBUG] unimproved gap 2017-11-14 09:45:27,832 [DEBUG] Moving from ref0590445.10e3 to ref0590445.10e5 (p=1) 2017-11-14 09:45:27,832 [DEBUG] contig 2017-11-14 09:45:27,832 [DEBUG] who? ref0590445.10e5 ref0590445.10e3 2017-11-14 09:45:27,832 [DEBUG] Grabbing contig between nodes ref0590445.10e5 & ref0590445.10e3 - [trim 0, 0] 2017-11-14 09:45:27,833 [DEBUG] contig 12563 to 12632 2017-11-14 09:45:27,833 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,833 [DEBUG] Moving from ref0590445.10e5 to ref0590445.9e3 (p=1) 2017-11-14 09:45:27,833 [DEBUG] unimproved gap 2017-11-14 09:45:27,833 [DEBUG] Moving from ref0590445.9e3 to ref0590445.9e5 (p=1) 2017-11-14 09:45:27,833 [DEBUG] contig 2017-11-14 09:45:27,833 [DEBUG] who? ref0590445.9e5 ref0590445.9e3 2017-11-14 09:45:27,833 [DEBUG] Grabbing contig between nodes ref0590445.9e5 & ref0590445.9e3 - [trim 0, 0] 2017-11-14 09:45:27,833 [DEBUG] contig 11946 to 11981 2017-11-14 09:45:27,833 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,833 [DEBUG] Moving from ref0590445.9e5 to ref0590445.8e3 (p=1) 2017-11-14 09:45:27,833 [DEBUG] unimproved gap 2017-11-14 09:45:27,833 [DEBUG] Moving from ref0590445.8e3 to ref0590445.8e5 (p=1) 2017-11-14 09:45:27,833 [DEBUG] contig 2017-11-14 09:45:27,834 [DEBUG] who? ref0590445.8e5 ref0590445.8e3 2017-11-14 09:45:27,834 [DEBUG] Grabbing contig between nodes ref0590445.8e5 & ref0590445.8e3 - [trim 0, 0] 2017-11-14 09:45:27,834 [DEBUG] contig 11592 to 11622 2017-11-14 09:45:27,834 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,834 [DEBUG] Moving from ref0590445.8e5 to ref0590445.7e3 (p=1) 2017-11-14 09:45:27,834 [DEBUG] unimproved gap 2017-11-14 09:45:27,834 [DEBUG] Moving from ref0590445.7e3 to ref0590445.7e5 (p=1) 2017-11-14 09:45:27,834 [DEBUG] contig 2017-11-14 09:45:27,834 [DEBUG] who? ref0590445.7e5 ref0590445.7e3 2017-11-14 09:45:27,834 [DEBUG] Grabbing contig between nodes ref0590445.7e5 & ref0590445.7e3 - [trim 0, 0] 2017-11-14 09:45:27,834 [DEBUG] contig 11221 to 11374 2017-11-14 09:45:27,834 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,834 [DEBUG] Moving from ref0590445.7e5 to ref0590445.6e3 (p=1) 2017-11-14 09:45:27,835 [DEBUG] unimproved gap 2017-11-14 09:45:27,835 [DEBUG] Moving from ref0590445.6e3 to ref0590445.6e5 (p=1) 2017-11-14 09:45:27,835 [DEBUG] contig 2017-11-14 09:45:27,835 [DEBUG] who? ref0590445.6e5 ref0590445.6e3 2017-11-14 09:45:27,835 [DEBUG] Grabbing contig between nodes ref0590445.6e5 & ref0590445.6e3 - [trim 0, 0] 2017-11-14 09:45:27,835 [DEBUG] contig 10789 to 11051 2017-11-14 09:45:27,835 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,835 [DEBUG] Moving from ref0590445.6e5 to ref0590445.5e3 (p=1) 2017-11-14 09:45:27,835 [DEBUG] unimproved gap 2017-11-14 09:45:27,835 [DEBUG] Moving from ref0590445.5e3 to ref0590445.5e5 (p=1) 2017-11-14 09:45:27,835 [DEBUG] contig 2017-11-14 09:45:27,835 [DEBUG] who? ref0590445.5e5 ref0590445.5e3 2017-11-14 09:45:27,835 [DEBUG] Grabbing contig between nodes ref0590445.5e5 & ref0590445.5e3 - [trim 0, 0] 2017-11-14 09:45:27,836 [DEBUG] contig 7449 to 10232 2017-11-14 09:45:27,836 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,836 [DEBUG] Moving from ref0590445.5e5 to ref0590445.4e3 (p=1) 2017-11-14 09:45:27,836 [DEBUG] unimproved gap 2017-11-14 09:45:27,836 [DEBUG] Moving from ref0590445.4e3 to ref0590445.4e5 (p=1) 2017-11-14 09:45:27,836 [DEBUG] contig 2017-11-14 09:45:27,836 [DEBUG] who? ref0590445.4e5 ref0590445.4e3 2017-11-14 09:45:27,836 [DEBUG] Grabbing contig between nodes ref0590445.4e5 & ref0590445.4e3 - [trim 0, 0] 2017-11-14 09:45:27,836 [DEBUG] contig 5008 to 7004 2017-11-14 09:45:27,836 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,836 [DEBUG] Moving from ref0590445.4e5 to ref0590445.3e3 (p=1) 2017-11-14 09:45:27,836 [DEBUG] unimproved gap 2017-11-14 09:45:27,836 [DEBUG] Moving from ref0590445.3e3 to ref0590445.3e5 (p=1) 2017-11-14 09:45:27,837 [DEBUG] contig 2017-11-14 09:45:27,837 [DEBUG] who? ref0590445.3e5 ref0590445.3e3 2017-11-14 09:45:27,837 [DEBUG] Grabbing contig between nodes ref0590445.3e5 & ref0590445.3e3 - [trim 0, 0] 2017-11-14 09:45:27,837 [DEBUG] contig 4660 to 4793 2017-11-14 09:45:27,837 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,837 [DEBUG] Moving from ref0590445.3e5 to ref0590445.2e3 (p=1) 2017-11-14 09:45:27,837 [DEBUG] unimproved gap 2017-11-14 09:45:27,837 [DEBUG] Moving from ref0590445.2e3 to ref0590445.2e5 (p=1) 2017-11-14 09:45:27,837 [DEBUG] contig 2017-11-14 09:45:27,837 [DEBUG] who? ref0590445.2e5 ref0590445.2e3 2017-11-14 09:45:27,837 [DEBUG] Grabbing contig between nodes ref0590445.2e5 & ref0590445.2e3 - [trim 0, 0] 2017-11-14 09:45:27,837 [DEBUG] contig 1836 to 4531 2017-11-14 09:45:27,837 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,837 [DEBUG] Moving from ref0590445.2e5 to ref0590445.1e3 (p=1) 2017-11-14 09:45:27,838 [DEBUG] unimproved gap 2017-11-14 09:45:27,838 [DEBUG] Moving from ref0590445.1e3 to ref0590445.1e5 (p=1) 2017-11-14 09:45:27,838 [DEBUG] contig 2017-11-14 09:45:27,838 [DEBUG] who? ref0590445.1e5 ref0590445.1e3 2017-11-14 09:45:27,838 [DEBUG] Grabbing contig between nodes ref0590445.1e5 & ref0590445.1e3 - [trim 0, 0] 2017-11-14 09:45:27,838 [DEBUG] contig 1676 to 1751 2017-11-14 09:45:27,838 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,838 [DEBUG] Moving from ref0590445.1e5 to ref0590445.0e3 (p=1) 2017-11-14 09:45:27,838 [DEBUG] unimproved gap 2017-11-14 09:45:27,838 [DEBUG] Moving from ref0590445.0e3 to ref0590445e5 (p=1) 2017-11-14 09:45:27,838 [DEBUG] contig 2017-11-14 09:45:27,838 [DEBUG] who? ref0590445e5 ref0590445.0e3 2017-11-14 09:45:27,838 [DEBUG] Grabbing contig between nodes ref0590445e5 & ref0590445.0e3 - [trim 0, 0] 2017-11-14 09:45:27,838 [DEBUG] contig 0 to 1021 2017-11-14 09:45:27,839 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,839 [DEBUG] FirstFlipping 31 2017-11-14 09:45:27,839 [DEBUG] Contig 32 2017-11-14 09:45:27,841 [DEBUG] Moving from ref0588695e5 to ref0588695.0e3 (p=1) 2017-11-14 09:45:27,841 [DEBUG] contig 2017-11-14 09:45:27,842 [DEBUG] who? ref0588695e5 ref0588695.0e3 2017-11-14 09:45:27,842 [DEBUG] Grabbing contig between nodes ref0588695e5 & ref0588695.0e3 - [trim 0, 0] 2017-11-14 09:45:27,842 [DEBUG] contig 0 to 94 2017-11-14 09:45:27,842 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,842 [DEBUG] Moving from ref0588695.0e3 to ref0588695.1e5 (p=1) 2017-11-14 09:45:27,842 [DEBUG] unimproved gap 2017-11-14 09:45:27,842 [DEBUG] Moving from ref0588695.1e5 to ref0588695.1e3 (p=1) 2017-11-14 09:45:27,842 [DEBUG] contig 2017-11-14 09:45:27,842 [DEBUG] who? ref0588695.1e5 ref0588695.1e3 2017-11-14 09:45:27,842 [DEBUG] Grabbing contig between nodes ref0588695.1e5 & ref0588695.1e3 - [trim 0, 0] 2017-11-14 09:45:27,842 [DEBUG] contig 469 to 2670 2017-11-14 09:45:27,842 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,842 [DEBUG] Moving from ref0588695.1e3 to ref0588695.2e5 (p=1) 2017-11-14 09:45:27,842 [DEBUG] unimproved gap 2017-11-14 09:45:27,843 [DEBUG] Moving from ref0588695.2e5 to ref0588695.2e3 (p=1) 2017-11-14 09:45:27,843 [DEBUG] contig 2017-11-14 09:45:27,843 [DEBUG] who? ref0588695.2e5 ref0588695.2e3 2017-11-14 09:45:27,843 [DEBUG] Grabbing contig between nodes ref0588695.2e5 & ref0588695.2e3 - [trim 0, 0] 2017-11-14 09:45:27,843 [DEBUG] contig 2945 to 5666 2017-11-14 09:45:27,843 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,843 [DEBUG] Moving from ref0588695.2e3 to ref0588695.3e5 (p=1) 2017-11-14 09:45:27,843 [DEBUG] unimproved gap 2017-11-14 09:45:27,843 [DEBUG] Moving from ref0588695.3e5 to ref0588695.3e3 (p=1) 2017-11-14 09:45:27,843 [DEBUG] contig 2017-11-14 09:45:27,843 [DEBUG] who? ref0588695.3e5 ref0588695.3e3 2017-11-14 09:45:27,843 [DEBUG] Grabbing contig between nodes ref0588695.3e5 & ref0588695.3e3 - [trim 0, 0] 2017-11-14 09:45:27,843 [DEBUG] contig 5872 to 5918 2017-11-14 09:45:27,844 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,844 [DEBUG] Moving from ref0588695.3e3 to ref0588695.4e5 (p=1) 2017-11-14 09:45:27,844 [DEBUG] unimproved gap 2017-11-14 09:45:27,844 [DEBUG] Moving from ref0588695.4e5 to ref0588695.4e3 (p=1) 2017-11-14 09:45:27,844 [DEBUG] contig 2017-11-14 09:45:27,844 [DEBUG] who? ref0588695.4e5 ref0588695.4e3 2017-11-14 09:45:27,844 [DEBUG] Grabbing contig between nodes ref0588695.4e5 & ref0588695.4e3 - [trim 0, 0] 2017-11-14 09:45:27,844 [DEBUG] contig 6222 to 6605 2017-11-14 09:45:27,844 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,844 [DEBUG] Moving from ref0588695.4e3 to ref0588695.5e5 (p=1) 2017-11-14 09:45:27,844 [DEBUG] unimproved gap 2017-11-14 09:45:27,844 [DEBUG] Moving from ref0588695.5e5 to ref0588695.5e3 (p=1) 2017-11-14 09:45:27,844 [DEBUG] contig 2017-11-14 09:45:27,845 [DEBUG] who? ref0588695.5e5 ref0588695.5e3 2017-11-14 09:45:27,845 [DEBUG] Grabbing contig between nodes ref0588695.5e5 & ref0588695.5e3 - [trim 0, 0] 2017-11-14 09:45:27,845 [DEBUG] contig 7002 to 8314 2017-11-14 09:45:27,845 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,845 [DEBUG] Moving from ref0588695.5e3 to ref0588695.6e5 (p=1) 2017-11-14 09:45:27,845 [DEBUG] unimproved gap 2017-11-14 09:45:27,845 [DEBUG] Moving from ref0588695.6e5 to ref0588695.6e3 (p=1) 2017-11-14 09:45:27,845 [DEBUG] contig 2017-11-14 09:45:27,845 [DEBUG] who? ref0588695.6e5 ref0588695.6e3 2017-11-14 09:45:27,845 [DEBUG] Grabbing contig between nodes ref0588695.6e5 & ref0588695.6e3 - [trim 0, 0] 2017-11-14 09:45:27,845 [DEBUG] contig 8561 to 8843 2017-11-14 09:45:27,845 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,845 [DEBUG] Moving from ref0588695.6e3 to ref0588695.7e5 (p=1) 2017-11-14 09:45:27,845 [DEBUG] unimproved gap 2017-11-14 09:45:27,846 [DEBUG] Moving from ref0588695.7e5 to ref0588695.7e3 (p=1) 2017-11-14 09:45:27,846 [DEBUG] contig 2017-11-14 09:45:27,846 [DEBUG] who? ref0588695.7e5 ref0588695.7e3 2017-11-14 09:45:27,846 [DEBUG] Grabbing contig between nodes ref0588695.7e5 & ref0588695.7e3 - [trim 0, 0] 2017-11-14 09:45:27,846 [DEBUG] contig 9014 to 9325 2017-11-14 09:45:27,846 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,846 [DEBUG] Moving from ref0588695.7e3 to ref0588695.8e5 (p=1) 2017-11-14 09:45:27,846 [DEBUG] unimproved gap 2017-11-14 09:45:27,846 [DEBUG] Moving from ref0588695.8e5 to ref0588695.8e3 (p=1) 2017-11-14 09:45:27,846 [DEBUG] contig 2017-11-14 09:45:27,846 [DEBUG] who? ref0588695.8e5 ref0588695.8e3 2017-11-14 09:45:27,846 [DEBUG] Grabbing contig between nodes ref0588695.8e5 & ref0588695.8e3 - [trim 0, 0] 2017-11-14 09:45:27,846 [DEBUG] contig 9404 to 10866 2017-11-14 09:45:27,847 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,847 [DEBUG] Moving from ref0588695.8e3 to ref0588695.9e5 (p=1) 2017-11-14 09:45:27,847 [DEBUG] unimproved gap 2017-11-14 09:45:27,847 [DEBUG] Moving from ref0588695.9e5 to ref0588695.9e3 (p=1) 2017-11-14 09:45:27,847 [DEBUG] contig 2017-11-14 09:45:27,847 [DEBUG] who? ref0588695.9e5 ref0588695.9e3 2017-11-14 09:45:27,847 [DEBUG] Grabbing contig between nodes ref0588695.9e5 & ref0588695.9e3 - [trim 0, 0] 2017-11-14 09:45:27,847 [DEBUG] contig 11007 to 11058 2017-11-14 09:45:27,847 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,847 [DEBUG] Moving from ref0588695.9e3 to ref0588695.10e5 (p=1) 2017-11-14 09:45:27,847 [DEBUG] unimproved gap 2017-11-14 09:45:27,847 [DEBUG] Moving from ref0588695.10e5 to ref0588695.10e3 (p=1) 2017-11-14 09:45:27,847 [DEBUG] contig 2017-11-14 09:45:27,848 [DEBUG] who? ref0588695.10e5 ref0588695.10e3 2017-11-14 09:45:27,848 [DEBUG] Grabbing contig between nodes ref0588695.10e5 & ref0588695.10e3 - [trim 0, 0] 2017-11-14 09:45:27,848 [DEBUG] contig 11158 to 11205 2017-11-14 09:45:27,848 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,848 [DEBUG] Moving from ref0588695.10e3 to ref0588695.11e5 (p=1) 2017-11-14 09:45:27,848 [DEBUG] unimproved gap 2017-11-14 09:45:27,848 [DEBUG] Moving from ref0588695.11e5 to ref0588695.11e3 (p=1) 2017-11-14 09:45:27,848 [DEBUG] contig 2017-11-14 09:45:27,848 [DEBUG] who? ref0588695.11e5 ref0588695.11e3 2017-11-14 09:45:27,848 [DEBUG] Grabbing contig between nodes ref0588695.11e5 & ref0588695.11e3 - [trim 0, 0] 2017-11-14 09:45:27,848 [DEBUG] contig 11322 to 11360 2017-11-14 09:45:27,848 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,848 [DEBUG] Moving from ref0588695.11e3 to ref0588695.12e5 (p=1) 2017-11-14 09:45:27,849 [DEBUG] unimproved gap 2017-11-14 09:45:27,849 [DEBUG] Moving from ref0588695.12e5 to ref0588695.12e3 (p=1) 2017-11-14 09:45:27,849 [DEBUG] contig 2017-11-14 09:45:27,849 [DEBUG] who? ref0588695.12e5 ref0588695.12e3 2017-11-14 09:45:27,849 [DEBUG] Grabbing contig between nodes ref0588695.12e5 & ref0588695.12e3 - [trim 0, 0] 2017-11-14 09:45:27,849 [DEBUG] contig 11534 to 11573 2017-11-14 09:45:27,849 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,849 [DEBUG] Moving from ref0588695.12e3 to ref0588695.13e5 (p=1) 2017-11-14 09:45:27,849 [DEBUG] unimproved gap 2017-11-14 09:45:27,849 [DEBUG] Moving from ref0588695.13e5 to ref0588695.13e3 (p=1) 2017-11-14 09:45:27,849 [DEBUG] contig 2017-11-14 09:45:27,849 [DEBUG] who? ref0588695.13e5 ref0588695.13e3 2017-11-14 09:45:27,849 [DEBUG] Grabbing contig between nodes ref0588695.13e5 & ref0588695.13e3 - [trim 0, 0] 2017-11-14 09:45:27,849 [DEBUG] contig 11625 to 11726 2017-11-14 09:45:27,850 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,850 [DEBUG] Moving from ref0588695.13e3 to ref0588695.14e5 (p=1) 2017-11-14 09:45:27,850 [DEBUG] unimproved gap 2017-11-14 09:45:27,850 [DEBUG] Moving from ref0588695.14e5 to ref0588695.14e3 (p=1) 2017-11-14 09:45:27,850 [DEBUG] contig 2017-11-14 09:45:27,850 [DEBUG] who? ref0588695.14e5 ref0588695.14e3 2017-11-14 09:45:27,850 [DEBUG] Grabbing contig between nodes ref0588695.14e5 & ref0588695.14e3 - [trim 0, 0] 2017-11-14 09:45:27,850 [DEBUG] contig 12076 to 12160 2017-11-14 09:45:27,850 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,850 [DEBUG] Moving from ref0588695.14e3 to ref0588695.15e5 (p=1) 2017-11-14 09:45:27,850 [DEBUG] unimproved gap 2017-11-14 09:45:27,850 [DEBUG] Moving from ref0588695.15e5 to ref0588695.15e3 (p=1) 2017-11-14 09:45:27,850 [DEBUG] contig 2017-11-14 09:45:27,851 [DEBUG] who? ref0588695.15e5 ref0588695.15e3 2017-11-14 09:45:27,851 [DEBUG] Grabbing contig between nodes ref0588695.15e5 & ref0588695.15e3 - [trim 0, 0] 2017-11-14 09:45:27,851 [DEBUG] contig 12362 to 13932 2017-11-14 09:45:27,851 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,851 [DEBUG] Moving from ref0588695.15e3 to ref0588695.16e5 (p=1) 2017-11-14 09:45:27,851 [DEBUG] unimproved gap 2017-11-14 09:45:27,851 [DEBUG] Moving from ref0588695.16e5 to ref0588695.16e3 (p=1) 2017-11-14 09:45:27,851 [DEBUG] contig 2017-11-14 09:45:27,851 [DEBUG] who? ref0588695.16e5 ref0588695.16e3 2017-11-14 09:45:27,851 [DEBUG] Grabbing contig between nodes ref0588695.16e5 & ref0588695.16e3 - [trim 0, 0] 2017-11-14 09:45:27,851 [DEBUG] contig 14188 to 14222 2017-11-14 09:45:27,851 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,851 [DEBUG] Moving from ref0588695.16e3 to ref0588695.17e5 (p=1) 2017-11-14 09:45:27,851 [DEBUG] unimproved gap 2017-11-14 09:45:27,852 [DEBUG] Moving from ref0588695.17e5 to ref0588695.17e3 (p=1) 2017-11-14 09:45:27,852 [DEBUG] contig 2017-11-14 09:45:27,852 [DEBUG] who? ref0588695.17e5 ref0588695.17e3 2017-11-14 09:45:27,852 [DEBUG] Grabbing contig between nodes ref0588695.17e5 & ref0588695.17e3 - [trim 0, 0] 2017-11-14 09:45:27,852 [DEBUG] contig 14485 to 15063 2017-11-14 09:45:27,852 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,852 [DEBUG] Moving from ref0588695.17e3 to ref0588695.18e5 (p=1) 2017-11-14 09:45:27,852 [DEBUG] unimproved gap 2017-11-14 09:45:27,852 [DEBUG] Moving from ref0588695.18e5 to ref0588695.18e3 (p=1) 2017-11-14 09:45:27,852 [DEBUG] contig 2017-11-14 09:45:27,852 [DEBUG] who? ref0588695.18e5 ref0588695.18e3 2017-11-14 09:45:27,852 [DEBUG] Grabbing contig between nodes ref0588695.18e5 & ref0588695.18e3 - [trim 0, 0] 2017-11-14 09:45:27,853 [DEBUG] contig 15303 to 15898 2017-11-14 09:45:27,853 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,853 [DEBUG] Moving from ref0588695.18e3 to ref0588695.19e5 (p=1) 2017-11-14 09:45:27,853 [DEBUG] unimproved gap 2017-11-14 09:45:27,853 [DEBUG] Moving from ref0588695.19e5 to ref0588695e3 (p=1) 2017-11-14 09:45:27,853 [DEBUG] contig 2017-11-14 09:45:27,853 [DEBUG] who? ref0588695.19e5 ref0588695e3 2017-11-14 09:45:27,853 [DEBUG] Grabbing contig between nodes ref0588695.19e5 & ref0588695e3 - [trim 0, 0] 2017-11-14 09:45:27,853 [DEBUG] contig 16006 to 17201 2017-11-14 09:45:27,853 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,853 [DEBUG] Contig 33 2017-11-14 09:45:27,856 [DEBUG] Moving from ref0703773e3 to ref0703773.19e5 (p=1) 2017-11-14 09:45:27,856 [DEBUG] contig 2017-11-14 09:45:27,856 [DEBUG] who? ref0703773.19e5 ref0703773e3 2017-11-14 09:45:27,856 [DEBUG] Grabbing contig between nodes ref0703773.19e5 & ref0703773e3 - [trim 0, 0] 2017-11-14 09:45:27,856 [DEBUG] contig 51409 to 51932 2017-11-14 09:45:27,856 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,856 [DEBUG] Moving from ref0703773.19e5 to ref0703773.18e3 (p=1) 2017-11-14 09:45:27,856 [DEBUG] unimproved gap 2017-11-14 09:45:27,856 [DEBUG] Moving from ref0703773.18e3 to ref0703773.18e5 (p=1) 2017-11-14 09:45:27,856 [DEBUG] contig 2017-11-14 09:45:27,856 [DEBUG] who? ref0703773.18e5 ref0703773.18e3 2017-11-14 09:45:27,856 [DEBUG] Grabbing contig between nodes ref0703773.18e5 & ref0703773.18e3 - [trim 0, 0] 2017-11-14 09:45:27,857 [DEBUG] contig 45254 to 51295 2017-11-14 09:45:27,857 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,857 [DEBUG] Moving from ref0703773.18e5 to ref0703773.17e3 (p=1) 2017-11-14 09:45:27,857 [DEBUG] unimproved gap 2017-11-14 09:45:27,857 [DEBUG] Moving from ref0703773.17e3 to ref0703773.17e5 (p=1) 2017-11-14 09:45:27,857 [DEBUG] contig 2017-11-14 09:45:27,857 [DEBUG] who? ref0703773.17e5 ref0703773.17e3 2017-11-14 09:45:27,857 [DEBUG] Grabbing contig between nodes ref0703773.17e5 & ref0703773.17e3 - [trim 0, 0] 2017-11-14 09:45:27,857 [DEBUG] contig 42289 to 45132 2017-11-14 09:45:27,857 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,857 [DEBUG] Moving from ref0703773.17e5 to ref0703773.16e3 (p=1) 2017-11-14 09:45:27,857 [DEBUG] unimproved gap 2017-11-14 09:45:27,857 [DEBUG] Moving from ref0703773.16e3 to ref0703773.16e5 (p=1) 2017-11-14 09:45:27,858 [DEBUG] contig 2017-11-14 09:45:27,858 [DEBUG] who? ref0703773.16e5 ref0703773.16e3 2017-11-14 09:45:27,858 [DEBUG] Grabbing contig between nodes ref0703773.16e5 & ref0703773.16e3 - [trim 0, 0] 2017-11-14 09:45:27,858 [DEBUG] contig 41562 to 42116 2017-11-14 09:45:27,858 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,858 [DEBUG] Moving from ref0703773.16e5 to ref0703773.15e3 (p=1) 2017-11-14 09:45:27,858 [DEBUG] unimproved gap 2017-11-14 09:45:27,858 [DEBUG] Moving from ref0703773.15e3 to ref0703773.15e5 (p=1) 2017-11-14 09:45:27,858 [DEBUG] contig 2017-11-14 09:45:27,858 [DEBUG] who? ref0703773.15e5 ref0703773.15e3 2017-11-14 09:45:27,858 [DEBUG] Grabbing contig between nodes ref0703773.15e5 & ref0703773.15e3 - [trim 0, 0] 2017-11-14 09:45:27,858 [DEBUG] contig 36790 to 41128 2017-11-14 09:45:27,858 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,859 [DEBUG] Moving from ref0703773.15e5 to ref0703773.14e3 (p=1) 2017-11-14 09:45:27,859 [DEBUG] unimproved gap 2017-11-14 09:45:27,859 [DEBUG] Moving from ref0703773.14e3 to ref0703773.14e5 (p=1) 2017-11-14 09:45:27,859 [DEBUG] contig 2017-11-14 09:45:27,859 [DEBUG] who? ref0703773.14e5 ref0703773.14e3 2017-11-14 09:45:27,859 [DEBUG] Grabbing contig between nodes ref0703773.14e5 & ref0703773.14e3 - [trim 0, 0] 2017-11-14 09:45:27,859 [DEBUG] contig 35517 to 36725 2017-11-14 09:45:27,859 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,859 [DEBUG] Moving from ref0703773.14e5 to ref0703773.13e3 (p=1) 2017-11-14 09:45:27,859 [DEBUG] unimproved gap 2017-11-14 09:45:27,859 [DEBUG] Moving from ref0703773.13e3 to ref0703773.13e5 (p=1) 2017-11-14 09:45:27,859 [DEBUG] contig 2017-11-14 09:45:27,859 [DEBUG] who? ref0703773.13e5 ref0703773.13e3 2017-11-14 09:45:27,860 [DEBUG] Grabbing contig between nodes ref0703773.13e5 & ref0703773.13e3 - [trim 0, 0] 2017-11-14 09:45:27,860 [DEBUG] contig 28889 to 35409 2017-11-14 09:45:27,860 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,860 [DEBUG] Moving from ref0703773.13e5 to ref0703773.12e3 (p=1) 2017-11-14 09:45:27,860 [DEBUG] unimproved gap 2017-11-14 09:45:27,860 [DEBUG] Moving from ref0703773.12e3 to ref0703773.12e5 (p=1) 2017-11-14 09:45:27,860 [DEBUG] contig 2017-11-14 09:45:27,860 [DEBUG] who? ref0703773.12e5 ref0703773.12e3 2017-11-14 09:45:27,860 [DEBUG] Grabbing contig between nodes ref0703773.12e5 & ref0703773.12e3 - [trim 0, 0] 2017-11-14 09:45:27,860 [DEBUG] contig 26449 to 28514 2017-11-14 09:45:27,860 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,860 [DEBUG] Moving from ref0703773.12e5 to ref0703773.11e3 (p=1) 2017-11-14 09:45:27,860 [DEBUG] unimproved gap 2017-11-14 09:45:27,861 [DEBUG] Moving from ref0703773.11e3 to ref0703773.11e5 (p=1) 2017-11-14 09:45:27,861 [DEBUG] contig 2017-11-14 09:45:27,861 [DEBUG] who? ref0703773.11e5 ref0703773.11e3 2017-11-14 09:45:27,861 [DEBUG] Grabbing contig between nodes ref0703773.11e5 & ref0703773.11e3 - [trim 0, 0] 2017-11-14 09:45:27,861 [DEBUG] contig 22133 to 26131 2017-11-14 09:45:27,861 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,861 [DEBUG] Moving from ref0703773.11e5 to ref0703773.10e3 (p=1) 2017-11-14 09:45:27,861 [DEBUG] unimproved gap 2017-11-14 09:45:27,861 [DEBUG] Moving from ref0703773.10e3 to ref0703773.10e5 (p=1) 2017-11-14 09:45:27,861 [DEBUG] contig 2017-11-14 09:45:27,861 [DEBUG] who? ref0703773.10e5 ref0703773.10e3 2017-11-14 09:45:27,861 [DEBUG] Grabbing contig between nodes ref0703773.10e5 & ref0703773.10e3 - [trim 0, 0] 2017-11-14 09:45:27,861 [DEBUG] contig 19703 to 21793 2017-11-14 09:45:27,861 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,862 [DEBUG] Moving from ref0703773.10e5 to ref0703773.9e3 (p=1) 2017-11-14 09:45:27,862 [DEBUG] unimproved gap 2017-11-14 09:45:27,862 [DEBUG] Moving from ref0703773.9e3 to ref0703773.9e5 (p=1) 2017-11-14 09:45:27,862 [DEBUG] contig 2017-11-14 09:45:27,862 [DEBUG] who? ref0703773.9e5 ref0703773.9e3 2017-11-14 09:45:27,862 [DEBUG] Grabbing contig between nodes ref0703773.9e5 & ref0703773.9e3 - [trim 0, 0] 2017-11-14 09:45:27,862 [DEBUG] contig 18103 to 19644 2017-11-14 09:45:27,862 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,862 [DEBUG] Moving from ref0703773.9e5 to ref0703773.8e3 (p=1) 2017-11-14 09:45:27,862 [DEBUG] unimproved gap 2017-11-14 09:45:27,862 [DEBUG] Moving from ref0703773.8e3 to ref0703773.8e5 (p=1) 2017-11-14 09:45:27,862 [DEBUG] contig 2017-11-14 09:45:27,862 [DEBUG] who? ref0703773.8e5 ref0703773.8e3 2017-11-14 09:45:27,863 [DEBUG] Grabbing contig between nodes ref0703773.8e5 & ref0703773.8e3 - [trim 0, 0] 2017-11-14 09:45:27,863 [DEBUG] contig 14990 to 17488 2017-11-14 09:45:27,863 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,863 [DEBUG] Moving from ref0703773.8e5 to ref0703773.7e3 (p=1) 2017-11-14 09:45:27,863 [DEBUG] unimproved gap 2017-11-14 09:45:27,863 [DEBUG] Moving from ref0703773.7e3 to ref0703773.7e5 (p=1) 2017-11-14 09:45:27,863 [DEBUG] contig 2017-11-14 09:45:27,863 [DEBUG] who? ref0703773.7e5 ref0703773.7e3 2017-11-14 09:45:27,863 [DEBUG] Grabbing contig between nodes ref0703773.7e5 & ref0703773.7e3 - [trim 0, 0] 2017-11-14 09:45:27,863 [DEBUG] contig 10103 to 14867 2017-11-14 09:45:27,863 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,863 [DEBUG] Moving from ref0703773.7e5 to ref0703773.6e3 (p=1) 2017-11-14 09:45:27,863 [DEBUG] unimproved gap 2017-11-14 09:45:27,864 [DEBUG] Moving from ref0703773.6e3 to ref0703773.6e5 (p=1) 2017-11-14 09:45:27,864 [DEBUG] contig 2017-11-14 09:45:27,864 [DEBUG] who? ref0703773.6e5 ref0703773.6e3 2017-11-14 09:45:27,864 [DEBUG] Grabbing contig between nodes ref0703773.6e5 & ref0703773.6e3 - [trim 0, 0] 2017-11-14 09:45:27,864 [DEBUG] contig 7792 to 10012 2017-11-14 09:45:27,864 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,864 [DEBUG] Moving from ref0703773.6e5 to ref0703773.5e3 (p=1) 2017-11-14 09:45:27,864 [DEBUG] unimproved gap 2017-11-14 09:45:27,864 [DEBUG] Moving from ref0703773.5e3 to ref0703773.5e5 (p=1) 2017-11-14 09:45:27,864 [DEBUG] contig 2017-11-14 09:45:27,864 [DEBUG] who? ref0703773.5e5 ref0703773.5e3 2017-11-14 09:45:27,864 [DEBUG] Grabbing contig between nodes ref0703773.5e5 & ref0703773.5e3 - [trim 0, 0] 2017-11-14 09:45:27,864 [DEBUG] contig 7461 to 7618 2017-11-14 09:45:27,864 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,865 [DEBUG] Moving from ref0703773.5e5 to ref0703773.4e3 (p=1) 2017-11-14 09:45:27,865 [DEBUG] unimproved gap 2017-11-14 09:45:27,865 [DEBUG] Moving from ref0703773.4e3 to ref0703773.4e5 (p=1) 2017-11-14 09:45:27,865 [DEBUG] contig 2017-11-14 09:45:27,865 [DEBUG] who? ref0703773.4e5 ref0703773.4e3 2017-11-14 09:45:27,865 [DEBUG] Grabbing contig between nodes ref0703773.4e5 & ref0703773.4e3 - [trim 0, 0] 2017-11-14 09:45:27,865 [DEBUG] contig 7217 to 7248 2017-11-14 09:45:27,865 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,865 [DEBUG] Moving from ref0703773.4e5 to ref0703773.3e3 (p=1) 2017-11-14 09:45:27,865 [DEBUG] unimproved gap 2017-11-14 09:45:27,865 [DEBUG] Moving from ref0703773.3e3 to ref0703773.3e5 (p=1) 2017-11-14 09:45:27,865 [DEBUG] contig 2017-11-14 09:45:27,865 [DEBUG] who? ref0703773.3e5 ref0703773.3e3 2017-11-14 09:45:27,866 [DEBUG] Grabbing contig between nodes ref0703773.3e5 & ref0703773.3e3 - [trim 0, 0] 2017-11-14 09:45:27,866 [DEBUG] contig 5604 to 6915 2017-11-14 09:45:27,866 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,866 [DEBUG] Moving from ref0703773.3e5 to ref0703773.2e3 (p=1) 2017-11-14 09:45:27,866 [DEBUG] unimproved gap 2017-11-14 09:45:27,866 [DEBUG] Moving from ref0703773.2e3 to ref0703773.2e5 (p=1) 2017-11-14 09:45:27,866 [DEBUG] contig 2017-11-14 09:45:27,866 [DEBUG] who? ref0703773.2e5 ref0703773.2e3 2017-11-14 09:45:27,866 [DEBUG] Grabbing contig between nodes ref0703773.2e5 & ref0703773.2e3 - [trim 0, 0] 2017-11-14 09:45:27,866 [DEBUG] contig 5390 to 5417 2017-11-14 09:45:27,866 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,866 [DEBUG] Moving from ref0703773.2e5 to ref0703773.1e3 (p=1) 2017-11-14 09:45:27,866 [DEBUG] unimproved gap 2017-11-14 09:45:27,866 [DEBUG] Moving from ref0703773.1e3 to ref0703773.1e5 (p=1) 2017-11-14 09:45:27,867 [DEBUG] contig 2017-11-14 09:45:27,867 [DEBUG] who? ref0703773.1e5 ref0703773.1e3 2017-11-14 09:45:27,867 [DEBUG] Grabbing contig between nodes ref0703773.1e5 & ref0703773.1e3 - [trim 0, 0] 2017-11-14 09:45:27,867 [DEBUG] contig 4633 to 5249 2017-11-14 09:45:27,867 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,867 [DEBUG] Moving from ref0703773.1e5 to ref0703773.0e3 (p=1) 2017-11-14 09:45:27,867 [DEBUG] unimproved gap 2017-11-14 09:45:27,867 [DEBUG] Moving from ref0703773.0e3 to ref0703773e5 (p=1) 2017-11-14 09:45:27,867 [DEBUG] contig 2017-11-14 09:45:27,867 [DEBUG] who? ref0703773e5 ref0703773.0e3 2017-11-14 09:45:27,867 [DEBUG] Grabbing contig between nodes ref0703773e5 & ref0703773.0e3 - [trim 0, 0] 2017-11-14 09:45:27,867 [DEBUG] contig 0 to 4285 2017-11-14 09:45:27,867 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,868 [DEBUG] FirstFlipping 33 2017-11-14 09:45:27,868 [DEBUG] Contig 34 2017-11-14 09:45:27,870 [DEBUG] Moving from ref0050030e3 to ref0050030.19e5 (p=1) 2017-11-14 09:45:27,871 [DEBUG] contig 2017-11-14 09:45:27,871 [DEBUG] who? ref0050030.19e5 ref0050030e3 2017-11-14 09:45:27,871 [DEBUG] Grabbing contig between nodes ref0050030.19e5 & ref0050030e3 - [trim 0, 0] 2017-11-14 09:45:27,871 [DEBUG] contig 21345 to 21625 2017-11-14 09:45:27,871 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,871 [DEBUG] Moving from ref0050030.19e5 to ref0050030.18e3 (p=1) 2017-11-14 09:45:27,871 [DEBUG] unimproved gap 2017-11-14 09:45:27,871 [DEBUG] Moving from ref0050030.18e3 to ref0050030.18e5 (p=1) 2017-11-14 09:45:27,871 [DEBUG] contig 2017-11-14 09:45:27,871 [DEBUG] who? ref0050030.18e5 ref0050030.18e3 2017-11-14 09:45:27,871 [DEBUG] Grabbing contig between nodes ref0050030.18e5 & ref0050030.18e3 - [trim 0, 0] 2017-11-14 09:45:27,871 [DEBUG] contig 21077 to 21233 2017-11-14 09:45:27,871 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,871 [DEBUG] Moving from ref0050030.18e5 to ref0050030.17e3 (p=1) 2017-11-14 09:45:27,872 [DEBUG] unimproved gap 2017-11-14 09:45:27,872 [DEBUG] Moving from ref0050030.17e3 to ref0050030.17e5 (p=1) 2017-11-14 09:45:27,872 [DEBUG] contig 2017-11-14 09:45:27,872 [DEBUG] who? ref0050030.17e5 ref0050030.17e3 2017-11-14 09:45:27,872 [DEBUG] Grabbing contig between nodes ref0050030.17e5 & ref0050030.17e3 - [trim 0, 0] 2017-11-14 09:45:27,872 [DEBUG] contig 20182 to 20843 2017-11-14 09:45:27,872 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,872 [DEBUG] Moving from ref0050030.17e5 to ref0050030.16e3 (p=1) 2017-11-14 09:45:27,872 [DEBUG] unimproved gap 2017-11-14 09:45:27,872 [DEBUG] Moving from ref0050030.16e3 to ref0050030.16e5 (p=1) 2017-11-14 09:45:27,872 [DEBUG] contig 2017-11-14 09:45:27,872 [DEBUG] who? ref0050030.16e5 ref0050030.16e3 2017-11-14 09:45:27,872 [DEBUG] Grabbing contig between nodes ref0050030.16e5 & ref0050030.16e3 - [trim 0, 0] 2017-11-14 09:45:27,873 [DEBUG] contig 19671 to 19936 2017-11-14 09:45:27,873 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,873 [DEBUG] Moving from ref0050030.16e5 to ref0050030.15e3 (p=1) 2017-11-14 09:45:27,873 [DEBUG] unimproved gap 2017-11-14 09:45:27,873 [DEBUG] Moving from ref0050030.15e3 to ref0050030.15e5 (p=1) 2017-11-14 09:45:27,873 [DEBUG] contig 2017-11-14 09:45:27,873 [DEBUG] who? ref0050030.15e5 ref0050030.15e3 2017-11-14 09:45:27,873 [DEBUG] Grabbing contig between nodes ref0050030.15e5 & ref0050030.15e3 - [trim 0, 0] 2017-11-14 09:45:27,873 [DEBUG] contig 19091 to 19363 2017-11-14 09:45:27,873 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,873 [DEBUG] Moving from ref0050030.15e5 to ref0050030.14e3 (p=1) 2017-11-14 09:45:27,873 [DEBUG] unimproved gap 2017-11-14 09:45:27,873 [DEBUG] Moving from ref0050030.14e3 to ref0050030.14e5 (p=1) 2017-11-14 09:45:27,874 [DEBUG] contig 2017-11-14 09:45:27,874 [DEBUG] who? ref0050030.14e5 ref0050030.14e3 2017-11-14 09:45:27,874 [DEBUG] Grabbing contig between nodes ref0050030.14e5 & ref0050030.14e3 - [trim 0, 0] 2017-11-14 09:45:27,874 [DEBUG] contig 17122 to 18792 2017-11-14 09:45:27,874 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,874 [DEBUG] Moving from ref0050030.14e5 to ref0050030.13e3 (p=1) 2017-11-14 09:45:27,874 [DEBUG] unimproved gap 2017-11-14 09:45:27,874 [DEBUG] Moving from ref0050030.13e3 to ref0050030.13e5 (p=1) 2017-11-14 09:45:27,874 [DEBUG] contig 2017-11-14 09:45:27,874 [DEBUG] who? ref0050030.13e5 ref0050030.13e3 2017-11-14 09:45:27,874 [DEBUG] Grabbing contig between nodes ref0050030.13e5 & ref0050030.13e3 - [trim 0, 0] 2017-11-14 09:45:27,874 [DEBUG] contig 16801 to 16838 2017-11-14 09:45:27,874 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,874 [DEBUG] Moving from ref0050030.13e5 to ref0050030.12e3 (p=1) 2017-11-14 09:45:27,875 [DEBUG] unimproved gap 2017-11-14 09:45:27,875 [DEBUG] Moving from ref0050030.12e3 to ref0050030.12e5 (p=1) 2017-11-14 09:45:27,875 [DEBUG] contig 2017-11-14 09:45:27,875 [DEBUG] who? ref0050030.12e5 ref0050030.12e3 2017-11-14 09:45:27,875 [DEBUG] Grabbing contig between nodes ref0050030.12e5 & ref0050030.12e3 - [trim 0, 0] 2017-11-14 09:45:27,875 [DEBUG] contig 14434 to 16214 2017-11-14 09:45:27,875 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,875 [DEBUG] Moving from ref0050030.12e5 to ref0050030.11e3 (p=1) 2017-11-14 09:45:27,875 [DEBUG] unimproved gap 2017-11-14 09:45:27,875 [DEBUG] Moving from ref0050030.11e3 to ref0050030.11e5 (p=1) 2017-11-14 09:45:27,875 [DEBUG] contig 2017-11-14 09:45:27,875 [DEBUG] who? ref0050030.11e5 ref0050030.11e3 2017-11-14 09:45:27,876 [DEBUG] Grabbing contig between nodes ref0050030.11e5 & ref0050030.11e3 - [trim 0, 0] 2017-11-14 09:45:27,876 [DEBUG] contig 14018 to 14050 2017-11-14 09:45:27,876 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,876 [DEBUG] Moving from ref0050030.11e5 to ref0050030.10e3 (p=1) 2017-11-14 09:45:27,876 [DEBUG] unimproved gap 2017-11-14 09:45:27,876 [DEBUG] Moving from ref0050030.10e3 to ref0050030.10e5 (p=1) 2017-11-14 09:45:27,876 [DEBUG] contig 2017-11-14 09:45:27,876 [DEBUG] who? ref0050030.10e5 ref0050030.10e3 2017-11-14 09:45:27,876 [DEBUG] Grabbing contig between nodes ref0050030.10e5 & ref0050030.10e3 - [trim 0, 0] 2017-11-14 09:45:27,876 [DEBUG] contig 12419 to 13934 2017-11-14 09:45:27,876 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,876 [DEBUG] Moving from ref0050030.10e5 to ref0050030.9e3 (p=1) 2017-11-14 09:45:27,877 [DEBUG] unimproved gap 2017-11-14 09:45:27,877 [DEBUG] Moving from ref0050030.9e3 to ref0050030.9e5 (p=1) 2017-11-14 09:45:27,877 [DEBUG] contig 2017-11-14 09:45:27,877 [DEBUG] who? ref0050030.9e5 ref0050030.9e3 2017-11-14 09:45:27,877 [DEBUG] Grabbing contig between nodes ref0050030.9e5 & ref0050030.9e3 - [trim 0, 0] 2017-11-14 09:45:27,877 [DEBUG] contig 11714 to 12267 2017-11-14 09:45:27,877 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,877 [DEBUG] Moving from ref0050030.9e5 to ref0050030.8e3 (p=1) 2017-11-14 09:45:27,877 [DEBUG] unimproved gap 2017-11-14 09:45:27,877 [DEBUG] Moving from ref0050030.8e3 to ref0050030.8e5 (p=1) 2017-11-14 09:45:27,877 [DEBUG] contig 2017-11-14 09:45:27,877 [DEBUG] who? ref0050030.8e5 ref0050030.8e3 2017-11-14 09:45:27,877 [DEBUG] Grabbing contig between nodes ref0050030.8e5 & ref0050030.8e3 - [trim 0, 0] 2017-11-14 09:45:27,877 [DEBUG] contig 10699 to 11332 2017-11-14 09:45:27,878 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,878 [DEBUG] Moving from ref0050030.8e5 to ref0050030.7e3 (p=1) 2017-11-14 09:45:27,878 [DEBUG] unimproved gap 2017-11-14 09:45:27,878 [DEBUG] Moving from ref0050030.7e3 to ref0050030.7e5 (p=1) 2017-11-14 09:45:27,878 [DEBUG] contig 2017-11-14 09:45:27,878 [DEBUG] who? ref0050030.7e5 ref0050030.7e3 2017-11-14 09:45:27,878 [DEBUG] Grabbing contig between nodes ref0050030.7e5 & ref0050030.7e3 - [trim 0, 0] 2017-11-14 09:45:27,878 [DEBUG] contig 10196 to 10235 2017-11-14 09:45:27,878 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,878 [DEBUG] Moving from ref0050030.7e5 to ref0050030.6e3 (p=1) 2017-11-14 09:45:27,878 [DEBUG] unimproved gap 2017-11-14 09:45:27,878 [DEBUG] Moving from ref0050030.6e3 to ref0050030.6e5 (p=1) 2017-11-14 09:45:27,878 [DEBUG] contig 2017-11-14 09:45:27,879 [DEBUG] who? ref0050030.6e5 ref0050030.6e3 2017-11-14 09:45:27,879 [DEBUG] Grabbing contig between nodes ref0050030.6e5 & ref0050030.6e3 - [trim 0, 0] 2017-11-14 09:45:27,879 [DEBUG] contig 9095 to 9848 2017-11-14 09:45:27,879 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,879 [DEBUG] Moving from ref0050030.6e5 to ref0050030.5e3 (p=1) 2017-11-14 09:45:27,879 [DEBUG] unimproved gap 2017-11-14 09:45:27,879 [DEBUG] Moving from ref0050030.5e3 to ref0050030.5e5 (p=1) 2017-11-14 09:45:27,879 [DEBUG] contig 2017-11-14 09:45:27,879 [DEBUG] who? ref0050030.5e5 ref0050030.5e3 2017-11-14 09:45:27,879 [DEBUG] Grabbing contig between nodes ref0050030.5e5 & ref0050030.5e3 - [trim 0, 0] 2017-11-14 09:45:27,879 [DEBUG] contig 6653 to 8742 2017-11-14 09:45:27,879 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,879 [DEBUG] Moving from ref0050030.5e5 to ref0050030.4e3 (p=1) 2017-11-14 09:45:27,879 [DEBUG] unimproved gap 2017-11-14 09:45:27,880 [DEBUG] Moving from ref0050030.4e3 to ref0050030.4e5 (p=1) 2017-11-14 09:45:27,880 [DEBUG] contig 2017-11-14 09:45:27,880 [DEBUG] who? ref0050030.4e5 ref0050030.4e3 2017-11-14 09:45:27,880 [DEBUG] Grabbing contig between nodes ref0050030.4e5 & ref0050030.4e3 - [trim 0, 0] 2017-11-14 09:45:27,880 [DEBUG] contig 3223 to 6391 2017-11-14 09:45:27,880 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,880 [DEBUG] Moving from ref0050030.4e5 to ref0050030.3e3 (p=1) 2017-11-14 09:45:27,880 [DEBUG] unimproved gap 2017-11-14 09:45:27,880 [DEBUG] Moving from ref0050030.3e3 to ref0050030.3e5 (p=1) 2017-11-14 09:45:27,880 [DEBUG] contig 2017-11-14 09:45:27,880 [DEBUG] who? ref0050030.3e5 ref0050030.3e3 2017-11-14 09:45:27,880 [DEBUG] Grabbing contig between nodes ref0050030.3e5 & ref0050030.3e3 - [trim 0, 0] 2017-11-14 09:45:27,880 [DEBUG] contig 2255 to 2822 2017-11-14 09:45:27,881 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,881 [DEBUG] Moving from ref0050030.3e5 to ref0050030.2e3 (p=1) 2017-11-14 09:45:27,881 [DEBUG] unimproved gap 2017-11-14 09:45:27,881 [DEBUG] Moving from ref0050030.2e3 to ref0050030.2e5 (p=1) 2017-11-14 09:45:27,881 [DEBUG] contig 2017-11-14 09:45:27,881 [DEBUG] who? ref0050030.2e5 ref0050030.2e3 2017-11-14 09:45:27,881 [DEBUG] Grabbing contig between nodes ref0050030.2e5 & ref0050030.2e3 - [trim 0, 0] 2017-11-14 09:45:27,881 [DEBUG] contig 1970 to 1995 2017-11-14 09:45:27,881 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,881 [DEBUG] Moving from ref0050030.2e5 to ref0050030.1e3 (p=1) 2017-11-14 09:45:27,881 [DEBUG] unimproved gap 2017-11-14 09:45:27,881 [DEBUG] Moving from ref0050030.1e3 to ref0050030.1e5 (p=1) 2017-11-14 09:45:27,881 [DEBUG] contig 2017-11-14 09:45:27,882 [DEBUG] who? ref0050030.1e5 ref0050030.1e3 2017-11-14 09:45:27,882 [DEBUG] Grabbing contig between nodes ref0050030.1e5 & ref0050030.1e3 - [trim 0, 0] 2017-11-14 09:45:27,882 [DEBUG] contig 676 to 1764 2017-11-14 09:45:27,882 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,882 [DEBUG] Moving from ref0050030.1e5 to ref0050030.0e3 (p=1) 2017-11-14 09:45:27,882 [DEBUG] unimproved gap 2017-11-14 09:45:27,882 [DEBUG] Moving from ref0050030.0e3 to ref0050030e5 (p=1) 2017-11-14 09:45:27,882 [DEBUG] contig 2017-11-14 09:45:27,882 [DEBUG] who? ref0050030e5 ref0050030.0e3 2017-11-14 09:45:27,882 [DEBUG] Grabbing contig between nodes ref0050030e5 & ref0050030.0e3 - [trim 0, 0] 2017-11-14 09:45:27,882 [DEBUG] contig 0 to 374 2017-11-14 09:45:27,882 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,882 [DEBUG] FirstFlipping 34 2017-11-14 09:45:27,883 [DEBUG] Contig 35 2017-11-14 09:45:27,885 [DEBUG] Moving from ref0314358e5 to ref0314358.0e3 (p=1) 2017-11-14 09:45:27,885 [DEBUG] contig 2017-11-14 09:45:27,885 [DEBUG] who? ref0314358e5 ref0314358.0e3 2017-11-14 09:45:27,885 [DEBUG] Grabbing contig between nodes ref0314358e5 & ref0314358.0e3 - [trim 0, 0] 2017-11-14 09:45:27,885 [DEBUG] contig 0 to 986 2017-11-14 09:45:27,885 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,886 [DEBUG] Moving from ref0314358.0e3 to ref0314358.1e5 (p=1) 2017-11-14 09:45:27,886 [DEBUG] unimproved gap 2017-11-14 09:45:27,886 [DEBUG] Moving from ref0314358.1e5 to ref0314358.1e3 (p=1) 2017-11-14 09:45:27,886 [DEBUG] contig 2017-11-14 09:45:27,886 [DEBUG] who? ref0314358.1e5 ref0314358.1e3 2017-11-14 09:45:27,886 [DEBUG] Grabbing contig between nodes ref0314358.1e5 & ref0314358.1e3 - [trim 0, 0] 2017-11-14 09:45:27,886 [DEBUG] contig 1076 to 3809 2017-11-14 09:45:27,886 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,886 [DEBUG] Moving from ref0314358.1e3 to ref0314358.2e5 (p=1) 2017-11-14 09:45:27,886 [DEBUG] unimproved gap 2017-11-14 09:45:27,886 [DEBUG] Moving from ref0314358.2e5 to ref0314358.2e3 (p=1) 2017-11-14 09:45:27,886 [DEBUG] contig 2017-11-14 09:45:27,886 [DEBUG] who? ref0314358.2e5 ref0314358.2e3 2017-11-14 09:45:27,887 [DEBUG] Grabbing contig between nodes ref0314358.2e5 & ref0314358.2e3 - [trim 0, 0] 2017-11-14 09:45:27,887 [DEBUG] contig 3885 to 9476 2017-11-14 09:45:27,887 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,887 [DEBUG] Moving from ref0314358.2e3 to ref0314358.3e5 (p=1) 2017-11-14 09:45:27,887 [DEBUG] unimproved gap 2017-11-14 09:45:27,887 [DEBUG] Moving from ref0314358.3e5 to ref0314358.3e3 (p=1) 2017-11-14 09:45:27,887 [DEBUG] contig 2017-11-14 09:45:27,887 [DEBUG] who? ref0314358.3e5 ref0314358.3e3 2017-11-14 09:45:27,887 [DEBUG] Grabbing contig between nodes ref0314358.3e5 & ref0314358.3e3 - [trim 0, 0] 2017-11-14 09:45:27,887 [DEBUG] contig 9885 to 9927 2017-11-14 09:45:27,887 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,887 [DEBUG] Moving from ref0314358.3e3 to ref0314358.4e5 (p=1) 2017-11-14 09:45:27,887 [DEBUG] unimproved gap 2017-11-14 09:45:27,888 [DEBUG] Moving from ref0314358.4e5 to ref0314358.4e3 (p=1) 2017-11-14 09:45:27,888 [DEBUG] contig 2017-11-14 09:45:27,888 [DEBUG] who? ref0314358.4e5 ref0314358.4e3 2017-11-14 09:45:27,888 [DEBUG] Grabbing contig between nodes ref0314358.4e5 & ref0314358.4e3 - [trim 0, 0] 2017-11-14 09:45:27,888 [DEBUG] contig 10275 to 11865 2017-11-14 09:45:27,888 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,888 [DEBUG] Moving from ref0314358.4e3 to ref0314358.5e5 (p=1) 2017-11-14 09:45:27,888 [DEBUG] unimproved gap 2017-11-14 09:45:27,888 [DEBUG] Moving from ref0314358.5e5 to ref0314358.5e3 (p=1) 2017-11-14 09:45:27,888 [DEBUG] contig 2017-11-14 09:45:27,888 [DEBUG] who? ref0314358.5e5 ref0314358.5e3 2017-11-14 09:45:27,888 [DEBUG] Grabbing contig between nodes ref0314358.5e5 & ref0314358.5e3 - [trim 0, 0] 2017-11-14 09:45:27,888 [DEBUG] contig 11949 to 14585 2017-11-14 09:45:27,888 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,889 [DEBUG] Moving from ref0314358.5e3 to ref0314358.6e5 (p=1) 2017-11-14 09:45:27,889 [DEBUG] unimproved gap 2017-11-14 09:45:27,889 [DEBUG] Moving from ref0314358.6e5 to ref0314358.6e3 (p=1) 2017-11-14 09:45:27,889 [DEBUG] contig 2017-11-14 09:45:27,889 [DEBUG] who? ref0314358.6e5 ref0314358.6e3 2017-11-14 09:45:27,889 [DEBUG] Grabbing contig between nodes ref0314358.6e5 & ref0314358.6e3 - [trim 0, 0] 2017-11-14 09:45:27,889 [DEBUG] contig 14935 to 16355 2017-11-14 09:45:27,889 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,889 [DEBUG] Moving from ref0314358.6e3 to ref0314358.7e5 (p=1) 2017-11-14 09:45:27,889 [DEBUG] unimproved gap 2017-11-14 09:45:27,889 [DEBUG] Moving from ref0314358.7e5 to ref0314358.7e3 (p=1) 2017-11-14 09:45:27,889 [DEBUG] contig 2017-11-14 09:45:27,889 [DEBUG] who? ref0314358.7e5 ref0314358.7e3 2017-11-14 09:45:27,890 [DEBUG] Grabbing contig between nodes ref0314358.7e5 & ref0314358.7e3 - [trim 0, 0] 2017-11-14 09:45:27,890 [DEBUG] contig 16464 to 19870 2017-11-14 09:45:27,890 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,890 [DEBUG] Moving from ref0314358.7e3 to ref0314358.8e5 (p=1) 2017-11-14 09:45:27,890 [DEBUG] unimproved gap 2017-11-14 09:45:27,890 [DEBUG] Moving from ref0314358.8e5 to ref0314358.8e3 (p=1) 2017-11-14 09:45:27,890 [DEBUG] contig 2017-11-14 09:45:27,890 [DEBUG] who? ref0314358.8e5 ref0314358.8e3 2017-11-14 09:45:27,890 [DEBUG] Grabbing contig between nodes ref0314358.8e5 & ref0314358.8e3 - [trim 0, 0] 2017-11-14 09:45:27,890 [DEBUG] contig 20162 to 21751 2017-11-14 09:45:27,890 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,890 [DEBUG] Moving from ref0314358.8e3 to ref0314358.9e5 (p=1) 2017-11-14 09:45:27,890 [DEBUG] unimproved gap 2017-11-14 09:45:27,890 [DEBUG] Moving from ref0314358.9e5 to ref0314358.9e3 (p=1) 2017-11-14 09:45:27,891 [DEBUG] contig 2017-11-14 09:45:27,891 [DEBUG] who? ref0314358.9e5 ref0314358.9e3 2017-11-14 09:45:27,891 [DEBUG] Grabbing contig between nodes ref0314358.9e5 & ref0314358.9e3 - [trim 0, 0] 2017-11-14 09:45:27,891 [DEBUG] contig 21835 to 21862 2017-11-14 09:45:27,891 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,891 [DEBUG] Moving from ref0314358.9e3 to ref0314358.10e5 (p=1) 2017-11-14 09:45:27,891 [DEBUG] unimproved gap 2017-11-14 09:45:27,891 [DEBUG] Moving from ref0314358.10e5 to ref0314358.10e3 (p=1) 2017-11-14 09:45:27,891 [DEBUG] contig 2017-11-14 09:45:27,891 [DEBUG] who? ref0314358.10e5 ref0314358.10e3 2017-11-14 09:45:27,891 [DEBUG] Grabbing contig between nodes ref0314358.10e5 & ref0314358.10e3 - [trim 0, 0] 2017-11-14 09:45:27,891 [DEBUG] contig 22002 to 26106 2017-11-14 09:45:27,891 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,892 [DEBUG] Moving from ref0314358.10e3 to ref0314358.11e5 (p=1) 2017-11-14 09:45:27,892 [DEBUG] unimproved gap 2017-11-14 09:45:27,892 [DEBUG] Moving from ref0314358.11e5 to ref0314358.11e3 (p=1) 2017-11-14 09:45:27,892 [DEBUG] contig 2017-11-14 09:45:27,892 [DEBUG] who? ref0314358.11e5 ref0314358.11e3 2017-11-14 09:45:27,892 [DEBUG] Grabbing contig between nodes ref0314358.11e5 & ref0314358.11e3 - [trim 0, 0] 2017-11-14 09:45:27,892 [DEBUG] contig 26261 to 26293 2017-11-14 09:45:27,892 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,892 [DEBUG] Moving from ref0314358.11e3 to ref0314358.12e5 (p=1) 2017-11-14 09:45:27,892 [DEBUG] unimproved gap 2017-11-14 09:45:27,892 [DEBUG] Moving from ref0314358.12e5 to ref0314358.12e3 (p=1) 2017-11-14 09:45:27,892 [DEBUG] contig 2017-11-14 09:45:27,893 [DEBUG] who? ref0314358.12e5 ref0314358.12e3 2017-11-14 09:45:27,893 [DEBUG] Grabbing contig between nodes ref0314358.12e5 & ref0314358.12e3 - [trim 0, 0] 2017-11-14 09:45:27,893 [DEBUG] contig 26429 to 26591 2017-11-14 09:45:27,893 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,893 [DEBUG] Moving from ref0314358.12e3 to ref0314358.13e5 (p=1) 2017-11-14 09:45:27,893 [DEBUG] unimproved gap 2017-11-14 09:45:27,893 [DEBUG] Moving from ref0314358.13e5 to ref0314358.13e3 (p=1) 2017-11-14 09:45:27,893 [DEBUG] contig 2017-11-14 09:45:27,893 [DEBUG] who? ref0314358.13e5 ref0314358.13e3 2017-11-14 09:45:27,893 [DEBUG] Grabbing contig between nodes ref0314358.13e5 & ref0314358.13e3 - [trim 0, 0] 2017-11-14 09:45:27,893 [DEBUG] contig 26950 to 27960 2017-11-14 09:45:27,893 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,893 [DEBUG] Moving from ref0314358.13e3 to ref0314358.14e5 (p=1) 2017-11-14 09:45:27,893 [DEBUG] unimproved gap 2017-11-14 09:45:27,894 [DEBUG] Moving from ref0314358.14e5 to ref0314358.14e3 (p=1) 2017-11-14 09:45:27,894 [DEBUG] contig 2017-11-14 09:45:27,894 [DEBUG] who? ref0314358.14e5 ref0314358.14e3 2017-11-14 09:45:27,894 [DEBUG] Grabbing contig between nodes ref0314358.14e5 & ref0314358.14e3 - [trim 0, 0] 2017-11-14 09:45:27,894 [DEBUG] contig 28028 to 32188 2017-11-14 09:45:27,894 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,894 [DEBUG] Moving from ref0314358.14e3 to ref0314358.15e5 (p=1) 2017-11-14 09:45:27,894 [DEBUG] unimproved gap 2017-11-14 09:45:27,894 [DEBUG] Moving from ref0314358.15e5 to ref0314358.15e3 (p=1) 2017-11-14 09:45:27,894 [DEBUG] contig 2017-11-14 09:45:27,894 [DEBUG] who? ref0314358.15e5 ref0314358.15e3 2017-11-14 09:45:27,894 [DEBUG] Grabbing contig between nodes ref0314358.15e5 & ref0314358.15e3 - [trim 0, 0] 2017-11-14 09:45:27,894 [DEBUG] contig 32324 to 33650 2017-11-14 09:45:27,895 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,895 [DEBUG] Moving from ref0314358.15e3 to ref0314358.16e5 (p=1) 2017-11-14 09:45:27,895 [DEBUG] unimproved gap 2017-11-14 09:45:27,895 [DEBUG] Moving from ref0314358.16e5 to ref0314358.16e3 (p=1) 2017-11-14 09:45:27,895 [DEBUG] contig 2017-11-14 09:45:27,895 [DEBUG] who? ref0314358.16e5 ref0314358.16e3 2017-11-14 09:45:27,895 [DEBUG] Grabbing contig between nodes ref0314358.16e5 & ref0314358.16e3 - [trim 0, 0] 2017-11-14 09:45:27,895 [DEBUG] contig 33961 to 40225 2017-11-14 09:45:27,895 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,895 [DEBUG] Moving from ref0314358.16e3 to ref0314358.17e5 (p=1) 2017-11-14 09:45:27,895 [DEBUG] unimproved gap 2017-11-14 09:45:27,895 [DEBUG] Moving from ref0314358.17e5 to ref0314358.17e3 (p=1) 2017-11-14 09:45:27,895 [DEBUG] contig 2017-11-14 09:45:27,895 [DEBUG] who? ref0314358.17e5 ref0314358.17e3 2017-11-14 09:45:27,896 [DEBUG] Grabbing contig between nodes ref0314358.17e5 & ref0314358.17e3 - [trim 0, 0] 2017-11-14 09:45:27,896 [DEBUG] contig 40673 to 42804 2017-11-14 09:45:27,896 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,896 [DEBUG] Moving from ref0314358.17e3 to ref0314358.18e5 (p=1) 2017-11-14 09:45:27,896 [DEBUG] unimproved gap 2017-11-14 09:45:27,896 [DEBUG] Moving from ref0314358.18e5 to ref0314358.18e3 (p=1) 2017-11-14 09:45:27,896 [DEBUG] contig 2017-11-14 09:45:27,896 [DEBUG] who? ref0314358.18e5 ref0314358.18e3 2017-11-14 09:45:27,896 [DEBUG] Grabbing contig between nodes ref0314358.18e5 & ref0314358.18e3 - [trim 0, 0] 2017-11-14 09:45:27,896 [DEBUG] contig 42853 to 42885 2017-11-14 09:45:27,896 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,896 [DEBUG] Moving from ref0314358.18e3 to ref0314358.19e5 (p=1) 2017-11-14 09:45:27,896 [DEBUG] unimproved gap 2017-11-14 09:45:27,897 [DEBUG] Moving from ref0314358.19e5 to ref0314358e3 (p=1) 2017-11-14 09:45:27,897 [DEBUG] contig 2017-11-14 09:45:27,897 [DEBUG] who? ref0314358.19e5 ref0314358e3 2017-11-14 09:45:27,897 [DEBUG] Grabbing contig between nodes ref0314358.19e5 & ref0314358e3 - [trim 0, 0] 2017-11-14 09:45:27,897 [DEBUG] contig 43008 to 43619 2017-11-14 09:45:27,897 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,897 [DEBUG] Contig 36 2017-11-14 09:45:27,899 [DEBUG] Moving from ref0092619e5 to ref0092619.0e3 (p=1) 2017-11-14 09:45:27,900 [DEBUG] contig 2017-11-14 09:45:27,900 [DEBUG] who? ref0092619e5 ref0092619.0e3 2017-11-14 09:45:27,900 [DEBUG] Grabbing contig between nodes ref0092619e5 & ref0092619.0e3 - [trim 0, 0] 2017-11-14 09:45:27,900 [DEBUG] contig 0 to 184 2017-11-14 09:45:27,900 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,900 [DEBUG] Moving from ref0092619.0e3 to ref0092619.1e5 (p=1) 2017-11-14 09:45:27,900 [DEBUG] unimproved gap 2017-11-14 09:45:27,900 [DEBUG] Moving from ref0092619.1e5 to ref0092619.1e3 (p=1) 2017-11-14 09:45:27,900 [DEBUG] contig 2017-11-14 09:45:27,900 [DEBUG] who? ref0092619.1e5 ref0092619.1e3 2017-11-14 09:45:27,900 [DEBUG] Grabbing contig between nodes ref0092619.1e5 & ref0092619.1e3 - [trim 0, 0] 2017-11-14 09:45:27,900 [DEBUG] contig 432 to 1871 2017-11-14 09:45:27,901 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,901 [DEBUG] Moving from ref0092619.1e3 to ref0092619.2e5 (p=1) 2017-11-14 09:45:27,901 [DEBUG] unimproved gap 2017-11-14 09:45:27,901 [DEBUG] Moving from ref0092619.2e5 to ref0092619.2e3 (p=1) 2017-11-14 09:45:27,901 [DEBUG] contig 2017-11-14 09:45:27,901 [DEBUG] who? ref0092619.2e5 ref0092619.2e3 2017-11-14 09:45:27,901 [DEBUG] Grabbing contig between nodes ref0092619.2e5 & ref0092619.2e3 - [trim 0, 0] 2017-11-14 09:45:27,901 [DEBUG] contig 1972 to 2247 2017-11-14 09:45:27,901 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,901 [DEBUG] Moving from ref0092619.2e3 to ref0092619.3e5 (p=1) 2017-11-14 09:45:27,901 [DEBUG] unimproved gap 2017-11-14 09:45:27,901 [DEBUG] Moving from ref0092619.3e5 to ref0092619.3e3 (p=1) 2017-11-14 09:45:27,901 [DEBUG] contig 2017-11-14 09:45:27,901 [DEBUG] who? ref0092619.3e5 ref0092619.3e3 2017-11-14 09:45:27,902 [DEBUG] Grabbing contig between nodes ref0092619.3e5 & ref0092619.3e3 - [trim 0, 0] 2017-11-14 09:45:27,902 [DEBUG] contig 2374 to 2916 2017-11-14 09:45:27,902 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,902 [DEBUG] Moving from ref0092619.3e3 to ref0092619.4e5 (p=1) 2017-11-14 09:45:27,902 [DEBUG] unimproved gap 2017-11-14 09:45:27,902 [DEBUG] Moving from ref0092619.4e5 to ref0092619.4e3 (p=1) 2017-11-14 09:45:27,902 [DEBUG] contig 2017-11-14 09:45:27,902 [DEBUG] who? ref0092619.4e5 ref0092619.4e3 2017-11-14 09:45:27,902 [DEBUG] Grabbing contig between nodes ref0092619.4e5 & ref0092619.4e3 - [trim 0, 0] 2017-11-14 09:45:27,902 [DEBUG] contig 3148 to 3198 2017-11-14 09:45:27,902 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,902 [DEBUG] Moving from ref0092619.4e3 to ref0092619.5e5 (p=1) 2017-11-14 09:45:27,902 [DEBUG] unimproved gap 2017-11-14 09:45:27,903 [DEBUG] Moving from ref0092619.5e5 to ref0092619.5e3 (p=1) 2017-11-14 09:45:27,903 [DEBUG] contig 2017-11-14 09:45:27,903 [DEBUG] who? ref0092619.5e5 ref0092619.5e3 2017-11-14 09:45:27,903 [DEBUG] Grabbing contig between nodes ref0092619.5e5 & ref0092619.5e3 - [trim 0, 0] 2017-11-14 09:45:27,903 [DEBUG] contig 3229 to 3262 2017-11-14 09:45:27,903 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,903 [DEBUG] Moving from ref0092619.5e3 to ref0092619.6e5 (p=1) 2017-11-14 09:45:27,903 [DEBUG] unimproved gap 2017-11-14 09:45:27,903 [DEBUG] Moving from ref0092619.6e5 to ref0092619.6e3 (p=1) 2017-11-14 09:45:27,903 [DEBUG] contig 2017-11-14 09:45:27,903 [DEBUG] who? ref0092619.6e5 ref0092619.6e3 2017-11-14 09:45:27,903 [DEBUG] Grabbing contig between nodes ref0092619.6e5 & ref0092619.6e3 - [trim 0, 0] 2017-11-14 09:45:27,903 [DEBUG] contig 3320 to 3378 2017-11-14 09:45:27,903 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,904 [DEBUG] Moving from ref0092619.6e3 to ref0092619.7e5 (p=1) 2017-11-14 09:45:27,904 [DEBUG] unimproved gap 2017-11-14 09:45:27,904 [DEBUG] Moving from ref0092619.7e5 to ref0092619.7e3 (p=1) 2017-11-14 09:45:27,904 [DEBUG] contig 2017-11-14 09:45:27,904 [DEBUG] who? ref0092619.7e5 ref0092619.7e3 2017-11-14 09:45:27,904 [DEBUG] Grabbing contig between nodes ref0092619.7e5 & ref0092619.7e3 - [trim 0, 0] 2017-11-14 09:45:27,904 [DEBUG] contig 3467 to 6042 2017-11-14 09:45:27,904 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,904 [DEBUG] Moving from ref0092619.7e3 to ref0092619.8e5 (p=1) 2017-11-14 09:45:27,904 [DEBUG] unimproved gap 2017-11-14 09:45:27,904 [DEBUG] Moving from ref0092619.8e5 to ref0092619.8e3 (p=1) 2017-11-14 09:45:27,904 [DEBUG] contig 2017-11-14 09:45:27,904 [DEBUG] who? ref0092619.8e5 ref0092619.8e3 2017-11-14 09:45:27,905 [DEBUG] Grabbing contig between nodes ref0092619.8e5 & ref0092619.8e3 - [trim 0, 0] 2017-11-14 09:45:27,905 [DEBUG] contig 6096 to 8340 2017-11-14 09:45:27,905 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,905 [DEBUG] Moving from ref0092619.8e3 to ref0092619.9e5 (p=1) 2017-11-14 09:45:27,905 [DEBUG] unimproved gap 2017-11-14 09:45:27,905 [DEBUG] Moving from ref0092619.9e5 to ref0092619.9e3 (p=1) 2017-11-14 09:45:27,905 [DEBUG] contig 2017-11-14 09:45:27,905 [DEBUG] who? ref0092619.9e5 ref0092619.9e3 2017-11-14 09:45:27,905 [DEBUG] Grabbing contig between nodes ref0092619.9e5 & ref0092619.9e3 - [trim 0, 0] 2017-11-14 09:45:27,905 [DEBUG] contig 8377 to 10512 2017-11-14 09:45:27,905 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,905 [DEBUG] Moving from ref0092619.9e3 to ref0092619.10e5 (p=1) 2017-11-14 09:45:27,905 [DEBUG] unimproved gap 2017-11-14 09:45:27,906 [DEBUG] Moving from ref0092619.10e5 to ref0092619.10e3 (p=1) 2017-11-14 09:45:27,906 [DEBUG] contig 2017-11-14 09:45:27,906 [DEBUG] who? ref0092619.10e5 ref0092619.10e3 2017-11-14 09:45:27,906 [DEBUG] Grabbing contig between nodes ref0092619.10e5 & ref0092619.10e3 - [trim 0, 0] 2017-11-14 09:45:27,906 [DEBUG] contig 10794 to 12755 2017-11-14 09:45:27,906 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,906 [DEBUG] Moving from ref0092619.10e3 to ref0092619.11e5 (p=1) 2017-11-14 09:45:27,906 [DEBUG] unimproved gap 2017-11-14 09:45:27,906 [DEBUG] Moving from ref0092619.11e5 to ref0092619.11e3 (p=1) 2017-11-14 09:45:27,906 [DEBUG] contig 2017-11-14 09:45:27,906 [DEBUG] who? ref0092619.11e5 ref0092619.11e3 2017-11-14 09:45:27,906 [DEBUG] Grabbing contig between nodes ref0092619.11e5 & ref0092619.11e3 - [trim 0, 0] 2017-11-14 09:45:27,906 [DEBUG] contig 12798 to 13008 2017-11-14 09:45:27,907 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,907 [DEBUG] Moving from ref0092619.11e3 to ref0092619.12e5 (p=1) 2017-11-14 09:45:27,907 [DEBUG] unimproved gap 2017-11-14 09:45:27,907 [DEBUG] Moving from ref0092619.12e5 to ref0092619.12e3 (p=1) 2017-11-14 09:45:27,907 [DEBUG] contig 2017-11-14 09:45:27,907 [DEBUG] who? ref0092619.12e5 ref0092619.12e3 2017-11-14 09:45:27,907 [DEBUG] Grabbing contig between nodes ref0092619.12e5 & ref0092619.12e3 - [trim 0, 0] 2017-11-14 09:45:27,907 [DEBUG] contig 13409 to 13613 2017-11-14 09:45:27,907 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,907 [DEBUG] Moving from ref0092619.12e3 to ref0092619.13e5 (p=1) 2017-11-14 09:45:27,907 [DEBUG] unimproved gap 2017-11-14 09:45:27,907 [DEBUG] Moving from ref0092619.13e5 to ref0092619.13e3 (p=1) 2017-11-14 09:45:27,907 [DEBUG] contig 2017-11-14 09:45:27,907 [DEBUG] who? ref0092619.13e5 ref0092619.13e3 2017-11-14 09:45:27,908 [DEBUG] Grabbing contig between nodes ref0092619.13e5 & ref0092619.13e3 - [trim 0, 0] 2017-11-14 09:45:27,908 [DEBUG] contig 13760 to 15227 2017-11-14 09:45:27,908 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,908 [DEBUG] Moving from ref0092619.13e3 to ref0092619.14e5 (p=1) 2017-11-14 09:45:27,908 [DEBUG] unimproved gap 2017-11-14 09:45:27,908 [DEBUG] Moving from ref0092619.14e5 to ref0092619.14e3 (p=1) 2017-11-14 09:45:27,908 [DEBUG] contig 2017-11-14 09:45:27,908 [DEBUG] who? ref0092619.14e5 ref0092619.14e3 2017-11-14 09:45:27,908 [DEBUG] Grabbing contig between nodes ref0092619.14e5 & ref0092619.14e3 - [trim 0, 0] 2017-11-14 09:45:27,908 [DEBUG] contig 15305 to 16140 2017-11-14 09:45:27,908 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,908 [DEBUG] Moving from ref0092619.14e3 to ref0092619.15e5 (p=1) 2017-11-14 09:45:27,909 [DEBUG] unimproved gap 2017-11-14 09:45:27,909 [DEBUG] Moving from ref0092619.15e5 to ref0092619.15e3 (p=1) 2017-11-14 09:45:27,909 [DEBUG] contig 2017-11-14 09:45:27,909 [DEBUG] who? ref0092619.15e5 ref0092619.15e3 2017-11-14 09:45:27,909 [DEBUG] Grabbing contig between nodes ref0092619.15e5 & ref0092619.15e3 - [trim 0, 0] 2017-11-14 09:45:27,909 [DEBUG] contig 16229 to 16449 2017-11-14 09:45:27,909 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,909 [DEBUG] Moving from ref0092619.15e3 to ref0092619.16e5 (p=1) 2017-11-14 09:45:27,909 [DEBUG] unimproved gap 2017-11-14 09:45:27,909 [DEBUG] Moving from ref0092619.16e5 to ref0092619.16e3 (p=1) 2017-11-14 09:45:27,909 [DEBUG] contig 2017-11-14 09:45:27,909 [DEBUG] who? ref0092619.16e5 ref0092619.16e3 2017-11-14 09:45:27,909 [DEBUG] Grabbing contig between nodes ref0092619.16e5 & ref0092619.16e3 - [trim 0, 0] 2017-11-14 09:45:27,909 [DEBUG] contig 16568 to 17080 2017-11-14 09:45:27,910 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,910 [DEBUG] Moving from ref0092619.16e3 to ref0092619.17e5 (p=1) 2017-11-14 09:45:27,910 [DEBUG] unimproved gap 2017-11-14 09:45:27,910 [DEBUG] Moving from ref0092619.17e5 to ref0092619.17e3 (p=1) 2017-11-14 09:45:27,910 [DEBUG] contig 2017-11-14 09:45:27,910 [DEBUG] who? ref0092619.17e5 ref0092619.17e3 2017-11-14 09:45:27,910 [DEBUG] Grabbing contig between nodes ref0092619.17e5 & ref0092619.17e3 - [trim 0, 0] 2017-11-14 09:45:27,910 [DEBUG] contig 17250 to 17847 2017-11-14 09:45:27,910 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,910 [DEBUG] Moving from ref0092619.17e3 to ref0092619.18e5 (p=1) 2017-11-14 09:45:27,910 [DEBUG] unimproved gap 2017-11-14 09:45:27,910 [DEBUG] Moving from ref0092619.18e5 to ref0092619.18e3 (p=1) 2017-11-14 09:45:27,910 [DEBUG] contig 2017-11-14 09:45:27,910 [DEBUG] who? ref0092619.18e5 ref0092619.18e3 2017-11-14 09:45:27,911 [DEBUG] Grabbing contig between nodes ref0092619.18e5 & ref0092619.18e3 - [trim 0, 0] 2017-11-14 09:45:27,911 [DEBUG] contig 17931 to 19369 2017-11-14 09:45:27,911 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,911 [DEBUG] Moving from ref0092619.18e3 to ref0092619.19e5 (p=1) 2017-11-14 09:45:27,911 [DEBUG] unimproved gap 2017-11-14 09:45:27,911 [DEBUG] Moving from ref0092619.19e5 to ref0092619e3 (p=1) 2017-11-14 09:45:27,911 [DEBUG] contig 2017-11-14 09:45:27,911 [DEBUG] who? ref0092619.19e5 ref0092619e3 2017-11-14 09:45:27,911 [DEBUG] Grabbing contig between nodes ref0092619.19e5 & ref0092619e3 - [trim 0, 0] 2017-11-14 09:45:27,911 [DEBUG] contig 19540 to 19648 2017-11-14 09:45:27,911 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,911 [DEBUG] Contig 37 2017-11-14 09:45:27,914 [DEBUG] Moving from ref0062152e3 to ref0062152.19e5 (p=1) 2017-11-14 09:45:27,914 [DEBUG] contig 2017-11-14 09:45:27,914 [DEBUG] who? ref0062152.19e5 ref0062152e3 2017-11-14 09:45:27,914 [DEBUG] Grabbing contig between nodes ref0062152.19e5 & ref0062152e3 - [trim 0, 0] 2017-11-14 09:45:27,914 [DEBUG] contig 25482 to 25915 2017-11-14 09:45:27,914 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,914 [DEBUG] Moving from ref0062152.19e5 to ref0062152.18e3 (p=1) 2017-11-14 09:45:27,914 [DEBUG] unimproved gap 2017-11-14 09:45:27,914 [DEBUG] Moving from ref0062152.18e3 to ref0062152.18e5 (p=1) 2017-11-14 09:45:27,915 [DEBUG] contig 2017-11-14 09:45:27,915 [DEBUG] who? ref0062152.18e5 ref0062152.18e3 2017-11-14 09:45:27,915 [DEBUG] Grabbing contig between nodes ref0062152.18e5 & ref0062152.18e3 - [trim 0, 0] 2017-11-14 09:45:27,915 [DEBUG] contig 25240 to 25364 2017-11-14 09:45:27,915 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,915 [DEBUG] Moving from ref0062152.18e5 to ref0062152.17e3 (p=1) 2017-11-14 09:45:27,915 [DEBUG] unimproved gap 2017-11-14 09:45:27,915 [DEBUG] Moving from ref0062152.17e3 to ref0062152.17e5 (p=1) 2017-11-14 09:45:27,915 [DEBUG] contig 2017-11-14 09:45:27,915 [DEBUG] who? ref0062152.17e5 ref0062152.17e3 2017-11-14 09:45:27,915 [DEBUG] Grabbing contig between nodes ref0062152.17e5 & ref0062152.17e3 - [trim 0, 0] 2017-11-14 09:45:27,915 [DEBUG] contig 25090 to 25163 2017-11-14 09:45:27,915 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,915 [DEBUG] Moving from ref0062152.17e5 to ref0062152.16e3 (p=1) 2017-11-14 09:45:27,916 [DEBUG] unimproved gap 2017-11-14 09:45:27,916 [DEBUG] Moving from ref0062152.16e3 to ref0062152.16e5 (p=1) 2017-11-14 09:45:27,916 [DEBUG] contig 2017-11-14 09:45:27,916 [DEBUG] who? ref0062152.16e5 ref0062152.16e3 2017-11-14 09:45:27,916 [DEBUG] Grabbing contig between nodes ref0062152.16e5 & ref0062152.16e3 - [trim 0, 0] 2017-11-14 09:45:27,916 [DEBUG] contig 24228 to 24797 2017-11-14 09:45:27,916 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,916 [DEBUG] Moving from ref0062152.16e5 to ref0062152.15e3 (p=1) 2017-11-14 09:45:27,916 [DEBUG] unimproved gap 2017-11-14 09:45:27,916 [DEBUG] Moving from ref0062152.15e3 to ref0062152.15e5 (p=1) 2017-11-14 09:45:27,916 [DEBUG] contig 2017-11-14 09:45:27,916 [DEBUG] who? ref0062152.15e5 ref0062152.15e3 2017-11-14 09:45:27,917 [DEBUG] Grabbing contig between nodes ref0062152.15e5 & ref0062152.15e3 - [trim 0, 0] 2017-11-14 09:45:27,917 [DEBUG] contig 23880 to 24091 2017-11-14 09:45:27,917 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,917 [DEBUG] Moving from ref0062152.15e5 to ref0062152.14e3 (p=1) 2017-11-14 09:45:27,917 [DEBUG] unimproved gap 2017-11-14 09:45:27,917 [DEBUG] Moving from ref0062152.14e3 to ref0062152.14e5 (p=1) 2017-11-14 09:45:27,917 [DEBUG] contig 2017-11-14 09:45:27,917 [DEBUG] who? ref0062152.14e5 ref0062152.14e3 2017-11-14 09:45:27,917 [DEBUG] Grabbing contig between nodes ref0062152.14e5 & ref0062152.14e3 - [trim 0, 0] 2017-11-14 09:45:27,917 [DEBUG] contig 21991 to 23789 2017-11-14 09:45:27,917 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,917 [DEBUG] Moving from ref0062152.14e5 to ref0062152.13e3 (p=1) 2017-11-14 09:45:27,917 [DEBUG] unimproved gap 2017-11-14 09:45:27,917 [DEBUG] Moving from ref0062152.13e3 to ref0062152.13e5 (p=1) 2017-11-14 09:45:27,918 [DEBUG] contig 2017-11-14 09:45:27,918 [DEBUG] who? ref0062152.13e5 ref0062152.13e3 2017-11-14 09:45:27,918 [DEBUG] Grabbing contig between nodes ref0062152.13e5 & ref0062152.13e3 - [trim 0, 0] 2017-11-14 09:45:27,918 [DEBUG] contig 20072 to 21912 2017-11-14 09:45:27,918 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,918 [DEBUG] Moving from ref0062152.13e5 to ref0062152.12e3 (p=1) 2017-11-14 09:45:27,918 [DEBUG] unimproved gap 2017-11-14 09:45:27,918 [DEBUG] Moving from ref0062152.12e3 to ref0062152.12e5 (p=1) 2017-11-14 09:45:27,918 [DEBUG] contig 2017-11-14 09:45:27,918 [DEBUG] who? ref0062152.12e5 ref0062152.12e3 2017-11-14 09:45:27,918 [DEBUG] Grabbing contig between nodes ref0062152.12e5 & ref0062152.12e3 - [trim 0, 0] 2017-11-14 09:45:27,918 [DEBUG] contig 19969 to 20025 2017-11-14 09:45:27,918 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,919 [DEBUG] Moving from ref0062152.12e5 to ref0062152.11e3 (p=1) 2017-11-14 09:45:27,919 [DEBUG] unimproved gap 2017-11-14 09:45:27,919 [DEBUG] Moving from ref0062152.11e3 to ref0062152.11e5 (p=1) 2017-11-14 09:45:27,919 [DEBUG] contig 2017-11-14 09:45:27,919 [DEBUG] who? ref0062152.11e5 ref0062152.11e3 2017-11-14 09:45:27,919 [DEBUG] Grabbing contig between nodes ref0062152.11e5 & ref0062152.11e3 - [trim 0, 0] 2017-11-14 09:45:27,919 [DEBUG] contig 18201 to 19769 2017-11-14 09:45:27,919 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,919 [DEBUG] Moving from ref0062152.11e5 to ref0062152.10e3 (p=1) 2017-11-14 09:45:27,919 [DEBUG] unimproved gap 2017-11-14 09:45:27,919 [DEBUG] Moving from ref0062152.10e3 to ref0062152.10e5 (p=1) 2017-11-14 09:45:27,919 [DEBUG] contig 2017-11-14 09:45:27,919 [DEBUG] who? ref0062152.10e5 ref0062152.10e3 2017-11-14 09:45:27,919 [DEBUG] Grabbing contig between nodes ref0062152.10e5 & ref0062152.10e3 - [trim 0, 0] 2017-11-14 09:45:27,920 [DEBUG] contig 16571 to 17799 2017-11-14 09:45:27,920 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,920 [DEBUG] Moving from ref0062152.10e5 to ref0062152.9e3 (p=1) 2017-11-14 09:45:27,920 [DEBUG] unimproved gap 2017-11-14 09:45:27,920 [DEBUG] Moving from ref0062152.9e3 to ref0062152.9e5 (p=1) 2017-11-14 09:45:27,920 [DEBUG] contig 2017-11-14 09:45:27,920 [DEBUG] who? ref0062152.9e5 ref0062152.9e3 2017-11-14 09:45:27,920 [DEBUG] Grabbing contig between nodes ref0062152.9e5 & ref0062152.9e3 - [trim 0, 0] 2017-11-14 09:45:27,920 [DEBUG] contig 11777 to 16480 2017-11-14 09:45:27,920 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,920 [DEBUG] Moving from ref0062152.9e5 to ref0062152.8e3 (p=1) 2017-11-14 09:45:27,920 [DEBUG] unimproved gap 2017-11-14 09:45:27,920 [DEBUG] Moving from ref0062152.8e3 to ref0062152.8e5 (p=1) 2017-11-14 09:45:27,921 [DEBUG] contig 2017-11-14 09:45:27,921 [DEBUG] who? ref0062152.8e5 ref0062152.8e3 2017-11-14 09:45:27,921 [DEBUG] Grabbing contig between nodes ref0062152.8e5 & ref0062152.8e3 - [trim 0, 0] 2017-11-14 09:45:27,921 [DEBUG] contig 11463 to 11504 2017-11-14 09:45:27,921 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,921 [DEBUG] Moving from ref0062152.8e5 to ref0062152.7e3 (p=1) 2017-11-14 09:45:27,921 [DEBUG] unimproved gap 2017-11-14 09:45:27,921 [DEBUG] Moving from ref0062152.7e3 to ref0062152.7e5 (p=1) 2017-11-14 09:45:27,921 [DEBUG] contig 2017-11-14 09:45:27,921 [DEBUG] who? ref0062152.7e5 ref0062152.7e3 2017-11-14 09:45:27,921 [DEBUG] Grabbing contig between nodes ref0062152.7e5 & ref0062152.7e3 - [trim 0, 0] 2017-11-14 09:45:27,921 [DEBUG] contig 8255 to 11231 2017-11-14 09:45:27,921 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,921 [DEBUG] Moving from ref0062152.7e5 to ref0062152.6e3 (p=1) 2017-11-14 09:45:27,922 [DEBUG] unimproved gap 2017-11-14 09:45:27,922 [DEBUG] Moving from ref0062152.6e3 to ref0062152.6e5 (p=1) 2017-11-14 09:45:27,922 [DEBUG] contig 2017-11-14 09:45:27,922 [DEBUG] who? ref0062152.6e5 ref0062152.6e3 2017-11-14 09:45:27,922 [DEBUG] Grabbing contig between nodes ref0062152.6e5 & ref0062152.6e3 - [trim 0, 0] 2017-11-14 09:45:27,922 [DEBUG] contig 7516 to 7787 2017-11-14 09:45:27,922 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,922 [DEBUG] Moving from ref0062152.6e5 to ref0062152.5e3 (p=1) 2017-11-14 09:45:27,922 [DEBUG] unimproved gap 2017-11-14 09:45:27,922 [DEBUG] Moving from ref0062152.5e3 to ref0062152.5e5 (p=1) 2017-11-14 09:45:27,922 [DEBUG] contig 2017-11-14 09:45:27,922 [DEBUG] who? ref0062152.5e5 ref0062152.5e3 2017-11-14 09:45:27,922 [DEBUG] Grabbing contig between nodes ref0062152.5e5 & ref0062152.5e3 - [trim 0, 0] 2017-11-14 09:45:27,923 [DEBUG] contig 6882 to 6958 2017-11-14 09:45:27,923 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,923 [DEBUG] Moving from ref0062152.5e5 to ref0062152.4e3 (p=1) 2017-11-14 09:45:27,923 [DEBUG] unimproved gap 2017-11-14 09:45:27,923 [DEBUG] Moving from ref0062152.4e3 to ref0062152.4e5 (p=1) 2017-11-14 09:45:27,923 [DEBUG] contig 2017-11-14 09:45:27,923 [DEBUG] who? ref0062152.4e5 ref0062152.4e3 2017-11-14 09:45:27,923 [DEBUG] Grabbing contig between nodes ref0062152.4e5 & ref0062152.4e3 - [trim 0, 0] 2017-11-14 09:45:27,923 [DEBUG] contig 6588 to 6641 2017-11-14 09:45:27,923 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,923 [DEBUG] Moving from ref0062152.4e5 to ref0062152.3e3 (p=1) 2017-11-14 09:45:27,923 [DEBUG] unimproved gap 2017-11-14 09:45:27,923 [DEBUG] Moving from ref0062152.3e3 to ref0062152.3e5 (p=1) 2017-11-14 09:45:27,923 [DEBUG] contig 2017-11-14 09:45:27,924 [DEBUG] who? ref0062152.3e5 ref0062152.3e3 2017-11-14 09:45:27,924 [DEBUG] Grabbing contig between nodes ref0062152.3e5 & ref0062152.3e3 - [trim 0, 0] 2017-11-14 09:45:27,924 [DEBUG] contig 6109 to 6256 2017-11-14 09:45:27,924 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,924 [DEBUG] Moving from ref0062152.3e5 to ref0062152.2e3 (p=1) 2017-11-14 09:45:27,924 [DEBUG] unimproved gap 2017-11-14 09:45:27,924 [DEBUG] Moving from ref0062152.2e3 to ref0062152.2e5 (p=1) 2017-11-14 09:45:27,924 [DEBUG] contig 2017-11-14 09:45:27,924 [DEBUG] who? ref0062152.2e5 ref0062152.2e3 2017-11-14 09:45:27,924 [DEBUG] Grabbing contig between nodes ref0062152.2e5 & ref0062152.2e3 - [trim 0, 0] 2017-11-14 09:45:27,924 [DEBUG] contig 1958 to 5636 2017-11-14 09:45:27,924 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,924 [DEBUG] Moving from ref0062152.2e5 to ref0062152.1e3 (p=1) 2017-11-14 09:45:27,925 [DEBUG] unimproved gap 2017-11-14 09:45:27,925 [DEBUG] Moving from ref0062152.1e3 to ref0062152.1e5 (p=1) 2017-11-14 09:45:27,925 [DEBUG] contig 2017-11-14 09:45:27,925 [DEBUG] who? ref0062152.1e5 ref0062152.1e3 2017-11-14 09:45:27,925 [DEBUG] Grabbing contig between nodes ref0062152.1e5 & ref0062152.1e3 - [trim 0, 0] 2017-11-14 09:45:27,925 [DEBUG] contig 940 to 1838 2017-11-14 09:45:27,925 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,925 [DEBUG] Moving from ref0062152.1e5 to ref0062152.0e3 (p=1) 2017-11-14 09:45:27,925 [DEBUG] unimproved gap 2017-11-14 09:45:27,925 [DEBUG] Moving from ref0062152.0e3 to ref0062152e5 (p=1) 2017-11-14 09:45:27,925 [DEBUG] contig 2017-11-14 09:45:27,925 [DEBUG] who? ref0062152e5 ref0062152.0e3 2017-11-14 09:45:27,925 [DEBUG] Grabbing contig between nodes ref0062152e5 & ref0062152.0e3 - [trim 0, 0] 2017-11-14 09:45:27,926 [DEBUG] contig 0 to 507 2017-11-14 09:45:27,926 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,926 [DEBUG] FirstFlipping 37 2017-11-14 09:45:27,926 [DEBUG] Contig 38 2017-11-14 09:45:27,928 [DEBUG] Moving from ref0177672e5 to ref0177672.0e3 (p=1) 2017-11-14 09:45:27,929 [DEBUG] contig 2017-11-14 09:45:27,929 [DEBUG] who? ref0177672e5 ref0177672.0e3 2017-11-14 09:45:27,929 [DEBUG] Grabbing contig between nodes ref0177672e5 & ref0177672.0e3 - [trim 0, 0] 2017-11-14 09:45:27,929 [DEBUG] contig 0 to 2642 2017-11-14 09:45:27,929 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,929 [DEBUG] Moving from ref0177672.0e3 to ref0177672.1e5 (p=1) 2017-11-14 09:45:27,929 [DEBUG] unimproved gap 2017-11-14 09:45:27,929 [DEBUG] Moving from ref0177672.1e5 to ref0177672.1e3 (p=1) 2017-11-14 09:45:27,929 [DEBUG] contig 2017-11-14 09:45:27,929 [DEBUG] who? ref0177672.1e5 ref0177672.1e3 2017-11-14 09:45:27,929 [DEBUG] Grabbing contig between nodes ref0177672.1e5 & ref0177672.1e3 - [trim 0, 0] 2017-11-14 09:45:27,929 [DEBUG] contig 2916 to 3263 2017-11-14 09:45:27,929 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,929 [DEBUG] Moving from ref0177672.1e3 to ref0177672.2e5 (p=1) 2017-11-14 09:45:27,930 [DEBUG] unimproved gap 2017-11-14 09:45:27,930 [DEBUG] Moving from ref0177672.2e5 to ref0177672.2e3 (p=1) 2017-11-14 09:45:27,930 [DEBUG] contig 2017-11-14 09:45:27,930 [DEBUG] who? ref0177672.2e5 ref0177672.2e3 2017-11-14 09:45:27,930 [DEBUG] Grabbing contig between nodes ref0177672.2e5 & ref0177672.2e3 - [trim 0, 0] 2017-11-14 09:45:27,930 [DEBUG] contig 3467 to 5319 2017-11-14 09:45:27,930 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,930 [DEBUG] Moving from ref0177672.2e3 to ref0177672.3e5 (p=1) 2017-11-14 09:45:27,930 [DEBUG] unimproved gap 2017-11-14 09:45:27,930 [DEBUG] Moving from ref0177672.3e5 to ref0177672.3e3 (p=1) 2017-11-14 09:45:27,930 [DEBUG] contig 2017-11-14 09:45:27,930 [DEBUG] who? ref0177672.3e5 ref0177672.3e3 2017-11-14 09:45:27,930 [DEBUG] Grabbing contig between nodes ref0177672.3e5 & ref0177672.3e3 - [trim 0, 0] 2017-11-14 09:45:27,931 [DEBUG] contig 5882 to 5925 2017-11-14 09:45:27,931 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,931 [DEBUG] Moving from ref0177672.3e3 to ref0177672.4e5 (p=1) 2017-11-14 09:45:27,931 [DEBUG] unimproved gap 2017-11-14 09:45:27,931 [DEBUG] Moving from ref0177672.4e5 to ref0177672.4e3 (p=1) 2017-11-14 09:45:27,931 [DEBUG] contig 2017-11-14 09:45:27,931 [DEBUG] who? ref0177672.4e5 ref0177672.4e3 2017-11-14 09:45:27,931 [DEBUG] Grabbing contig between nodes ref0177672.4e5 & ref0177672.4e3 - [trim 0, 0] 2017-11-14 09:45:27,931 [DEBUG] contig 6075 to 6450 2017-11-14 09:45:27,931 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,931 [DEBUG] Moving from ref0177672.4e3 to ref0177672.5e5 (p=1) 2017-11-14 09:45:27,931 [DEBUG] unimproved gap 2017-11-14 09:45:27,931 [DEBUG] Moving from ref0177672.5e5 to ref0177672.5e3 (p=1) 2017-11-14 09:45:27,932 [DEBUG] contig 2017-11-14 09:45:27,932 [DEBUG] who? ref0177672.5e5 ref0177672.5e3 2017-11-14 09:45:27,932 [DEBUG] Grabbing contig between nodes ref0177672.5e5 & ref0177672.5e3 - [trim 0, 0] 2017-11-14 09:45:27,932 [DEBUG] contig 6809 to 7645 2017-11-14 09:45:27,932 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,932 [DEBUG] Moving from ref0177672.5e3 to ref0177672.6e5 (p=1) 2017-11-14 09:45:27,932 [DEBUG] unimproved gap 2017-11-14 09:45:27,932 [DEBUG] Moving from ref0177672.6e5 to ref0177672.6e3 (p=1) 2017-11-14 09:45:27,932 [DEBUG] contig 2017-11-14 09:45:27,932 [DEBUG] who? ref0177672.6e5 ref0177672.6e3 2017-11-14 09:45:27,932 [DEBUG] Grabbing contig between nodes ref0177672.6e5 & ref0177672.6e3 - [trim 0, 0] 2017-11-14 09:45:27,932 [DEBUG] contig 8190 to 8393 2017-11-14 09:45:27,932 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,933 [DEBUG] Moving from ref0177672.6e3 to ref0177672.7e5 (p=1) 2017-11-14 09:45:27,933 [DEBUG] unimproved gap 2017-11-14 09:45:27,933 [DEBUG] Moving from ref0177672.7e5 to ref0177672.7e3 (p=1) 2017-11-14 09:45:27,933 [DEBUG] contig 2017-11-14 09:45:27,933 [DEBUG] who? ref0177672.7e5 ref0177672.7e3 2017-11-14 09:45:27,933 [DEBUG] Grabbing contig between nodes ref0177672.7e5 & ref0177672.7e3 - [trim 0, 0] 2017-11-14 09:45:27,933 [DEBUG] contig 8760 to 8973 2017-11-14 09:45:27,933 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,933 [DEBUG] Moving from ref0177672.7e3 to ref0177672.8e5 (p=1) 2017-11-14 09:45:27,933 [DEBUG] unimproved gap 2017-11-14 09:45:27,933 [DEBUG] Moving from ref0177672.8e5 to ref0177672.8e3 (p=1) 2017-11-14 09:45:27,933 [DEBUG] contig 2017-11-14 09:45:27,933 [DEBUG] who? ref0177672.8e5 ref0177672.8e3 2017-11-14 09:45:27,934 [DEBUG] Grabbing contig between nodes ref0177672.8e5 & ref0177672.8e3 - [trim 0, 0] 2017-11-14 09:45:27,934 [DEBUG] contig 9002 to 15591 2017-11-14 09:45:27,934 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,934 [DEBUG] Moving from ref0177672.8e3 to ref0177672.9e5 (p=1) 2017-11-14 09:45:27,934 [DEBUG] unimproved gap 2017-11-14 09:45:27,934 [DEBUG] Moving from ref0177672.9e5 to ref0177672.9e3 (p=1) 2017-11-14 09:45:27,934 [DEBUG] contig 2017-11-14 09:45:27,934 [DEBUG] who? ref0177672.9e5 ref0177672.9e3 2017-11-14 09:45:27,934 [DEBUG] Grabbing contig between nodes ref0177672.9e5 & ref0177672.9e3 - [trim 0, 0] 2017-11-14 09:45:27,934 [DEBUG] contig 16172 to 16880 2017-11-14 09:45:27,934 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,934 [DEBUG] Moving from ref0177672.9e3 to ref0177672.10e5 (p=1) 2017-11-14 09:45:27,934 [DEBUG] unimproved gap 2017-11-14 09:45:27,934 [DEBUG] Moving from ref0177672.10e5 to ref0177672.10e3 (p=1) 2017-11-14 09:45:27,935 [DEBUG] contig 2017-11-14 09:45:27,935 [DEBUG] who? ref0177672.10e5 ref0177672.10e3 2017-11-14 09:45:27,935 [DEBUG] Grabbing contig between nodes ref0177672.10e5 & ref0177672.10e3 - [trim 0, 0] 2017-11-14 09:45:27,935 [DEBUG] contig 17238 to 17301 2017-11-14 09:45:27,935 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,935 [DEBUG] Moving from ref0177672.10e3 to ref0177672.11e5 (p=1) 2017-11-14 09:45:27,935 [DEBUG] unimproved gap 2017-11-14 09:45:27,935 [DEBUG] Moving from ref0177672.11e5 to ref0177672.11e3 (p=1) 2017-11-14 09:45:27,935 [DEBUG] contig 2017-11-14 09:45:27,935 [DEBUG] who? ref0177672.11e5 ref0177672.11e3 2017-11-14 09:45:27,935 [DEBUG] Grabbing contig between nodes ref0177672.11e5 & ref0177672.11e3 - [trim 0, 0] 2017-11-14 09:45:27,935 [DEBUG] contig 17588 to 18610 2017-11-14 09:45:27,935 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,936 [DEBUG] Moving from ref0177672.11e3 to ref0177672.12e5 (p=1) 2017-11-14 09:45:27,936 [DEBUG] unimproved gap 2017-11-14 09:45:27,936 [DEBUG] Moving from ref0177672.12e5 to ref0177672.12e3 (p=1) 2017-11-14 09:45:27,936 [DEBUG] contig 2017-11-14 09:45:27,936 [DEBUG] who? ref0177672.12e5 ref0177672.12e3 2017-11-14 09:45:27,936 [DEBUG] Grabbing contig between nodes ref0177672.12e5 & ref0177672.12e3 - [trim 0, 0] 2017-11-14 09:45:27,936 [DEBUG] contig 18854 to 20791 2017-11-14 09:45:27,936 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,936 [DEBUG] Moving from ref0177672.12e3 to ref0177672.13e5 (p=1) 2017-11-14 09:45:27,936 [DEBUG] unimproved gap 2017-11-14 09:45:27,936 [DEBUG] Moving from ref0177672.13e5 to ref0177672.13e3 (p=1) 2017-11-14 09:45:27,936 [DEBUG] contig 2017-11-14 09:45:27,936 [DEBUG] who? ref0177672.13e5 ref0177672.13e3 2017-11-14 09:45:27,937 [DEBUG] Grabbing contig between nodes ref0177672.13e5 & ref0177672.13e3 - [trim 0, 0] 2017-11-14 09:45:27,937 [DEBUG] contig 21170 to 22086 2017-11-14 09:45:27,937 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,937 [DEBUG] Moving from ref0177672.13e3 to ref0177672.14e5 (p=1) 2017-11-14 09:45:27,937 [DEBUG] unimproved gap 2017-11-14 09:45:27,937 [DEBUG] Moving from ref0177672.14e5 to ref0177672.14e3 (p=1) 2017-11-14 09:45:27,937 [DEBUG] contig 2017-11-14 09:45:27,937 [DEBUG] who? ref0177672.14e5 ref0177672.14e3 2017-11-14 09:45:27,937 [DEBUG] Grabbing contig between nodes ref0177672.14e5 & ref0177672.14e3 - [trim 0, 0] 2017-11-14 09:45:27,937 [DEBUG] contig 22617 to 23105 2017-11-14 09:45:27,937 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,937 [DEBUG] Moving from ref0177672.14e3 to ref0177672.15e5 (p=1) 2017-11-14 09:45:27,937 [DEBUG] unimproved gap 2017-11-14 09:45:27,937 [DEBUG] Moving from ref0177672.15e5 to ref0177672.15e3 (p=1) 2017-11-14 09:45:27,938 [DEBUG] contig 2017-11-14 09:45:27,938 [DEBUG] who? ref0177672.15e5 ref0177672.15e3 2017-11-14 09:45:27,938 [DEBUG] Grabbing contig between nodes ref0177672.15e5 & ref0177672.15e3 - [trim 0, 0] 2017-11-14 09:45:27,938 [DEBUG] contig 23598 to 23901 2017-11-14 09:45:27,938 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,938 [DEBUG] Moving from ref0177672.15e3 to ref0177672.16e5 (p=1) 2017-11-14 09:45:27,938 [DEBUG] unimproved gap 2017-11-14 09:45:27,938 [DEBUG] Moving from ref0177672.16e5 to ref0177672.16e3 (p=1) 2017-11-14 09:45:27,938 [DEBUG] contig 2017-11-14 09:45:27,938 [DEBUG] who? ref0177672.16e5 ref0177672.16e3 2017-11-14 09:45:27,938 [DEBUG] Grabbing contig between nodes ref0177672.16e5 & ref0177672.16e3 - [trim 0, 0] 2017-11-14 09:45:27,938 [DEBUG] contig 24040 to 24177 2017-11-14 09:45:27,938 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,939 [DEBUG] Moving from ref0177672.16e3 to ref0177672.17e5 (p=1) 2017-11-14 09:45:27,939 [DEBUG] unimproved gap 2017-11-14 09:45:27,939 [DEBUG] Moving from ref0177672.17e5 to ref0177672.17e3 (p=1) 2017-11-14 09:45:27,939 [DEBUG] contig 2017-11-14 09:45:27,939 [DEBUG] who? ref0177672.17e5 ref0177672.17e3 2017-11-14 09:45:27,939 [DEBUG] Grabbing contig between nodes ref0177672.17e5 & ref0177672.17e3 - [trim 0, 0] 2017-11-14 09:45:27,939 [DEBUG] contig 24245 to 24396 2017-11-14 09:45:27,939 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,939 [DEBUG] Moving from ref0177672.17e3 to ref0177672.18e5 (p=1) 2017-11-14 09:45:27,939 [DEBUG] unimproved gap 2017-11-14 09:45:27,939 [DEBUG] Moving from ref0177672.18e5 to ref0177672.18e3 (p=1) 2017-11-14 09:45:27,939 [DEBUG] contig 2017-11-14 09:45:27,939 [DEBUG] who? ref0177672.18e5 ref0177672.18e3 2017-11-14 09:45:27,939 [DEBUG] Grabbing contig between nodes ref0177672.18e5 & ref0177672.18e3 - [trim 0, 0] 2017-11-14 09:45:27,940 [DEBUG] contig 24480 to 24619 2017-11-14 09:45:27,940 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,940 [DEBUG] Moving from ref0177672.18e3 to ref0177672.19e5 (p=1) 2017-11-14 09:45:27,940 [DEBUG] unimproved gap 2017-11-14 09:45:27,940 [DEBUG] Moving from ref0177672.19e5 to ref0177672e3 (p=1) 2017-11-14 09:45:27,940 [DEBUG] contig 2017-11-14 09:45:27,940 [DEBUG] who? ref0177672.19e5 ref0177672e3 2017-11-14 09:45:27,940 [DEBUG] Grabbing contig between nodes ref0177672.19e5 & ref0177672e3 - [trim 0, 0] 2017-11-14 09:45:27,940 [DEBUG] contig 24850 to 33089 2017-11-14 09:45:27,940 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,940 [DEBUG] Contig 39 2017-11-14 09:45:27,943 [DEBUG] Moving from ref0445941e5 to ref0445941.0e3 (p=1) 2017-11-14 09:45:27,943 [DEBUG] contig 2017-11-14 09:45:27,943 [DEBUG] who? ref0445941e5 ref0445941.0e3 2017-11-14 09:45:27,943 [DEBUG] Grabbing contig between nodes ref0445941e5 & ref0445941.0e3 - [trim 0, 0] 2017-11-14 09:45:27,943 [DEBUG] contig 0 to 1515 2017-11-14 09:45:27,943 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,943 [DEBUG] Moving from ref0445941.0e3 to ref0445941.1e5 (p=1) 2017-11-14 09:45:27,943 [DEBUG] unimproved gap 2017-11-14 09:45:27,943 [DEBUG] Moving from ref0445941.1e5 to ref0445941.1e3 (p=1) 2017-11-14 09:45:27,943 [DEBUG] contig 2017-11-14 09:45:27,944 [DEBUG] who? ref0445941.1e5 ref0445941.1e3 2017-11-14 09:45:27,944 [DEBUG] Grabbing contig between nodes ref0445941.1e5 & ref0445941.1e3 - [trim 0, 0] 2017-11-14 09:45:27,944 [DEBUG] contig 1576 to 5088 2017-11-14 09:45:27,944 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,944 [DEBUG] Moving from ref0445941.1e3 to ref0445941.2e5 (p=1) 2017-11-14 09:45:27,944 [DEBUG] unimproved gap 2017-11-14 09:45:27,944 [DEBUG] Moving from ref0445941.2e5 to ref0445941.2e3 (p=1) 2017-11-14 09:45:27,944 [DEBUG] contig 2017-11-14 09:45:27,944 [DEBUG] who? ref0445941.2e5 ref0445941.2e3 2017-11-14 09:45:27,944 [DEBUG] Grabbing contig between nodes ref0445941.2e5 & ref0445941.2e3 - [trim 0, 0] 2017-11-14 09:45:27,944 [DEBUG] contig 5692 to 7344 2017-11-14 09:45:27,944 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,944 [DEBUG] Moving from ref0445941.2e3 to ref0445941.3e5 (p=1) 2017-11-14 09:45:27,945 [DEBUG] unimproved gap 2017-11-14 09:45:27,945 [DEBUG] Moving from ref0445941.3e5 to ref0445941.3e3 (p=1) 2017-11-14 09:45:27,945 [DEBUG] contig 2017-11-14 09:45:27,945 [DEBUG] who? ref0445941.3e5 ref0445941.3e3 2017-11-14 09:45:27,945 [DEBUG] Grabbing contig between nodes ref0445941.3e5 & ref0445941.3e3 - [trim 0, 0] 2017-11-14 09:45:27,945 [DEBUG] contig 7411 to 7690 2017-11-14 09:45:27,945 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,945 [DEBUG] Moving from ref0445941.3e3 to ref0445941.4e5 (p=1) 2017-11-14 09:45:27,945 [DEBUG] unimproved gap 2017-11-14 09:45:27,945 [DEBUG] Moving from ref0445941.4e5 to ref0445941.4e3 (p=1) 2017-11-14 09:45:27,945 [DEBUG] contig 2017-11-14 09:45:27,945 [DEBUG] who? ref0445941.4e5 ref0445941.4e3 2017-11-14 09:45:27,945 [DEBUG] Grabbing contig between nodes ref0445941.4e5 & ref0445941.4e3 - [trim 0, 0] 2017-11-14 09:45:27,946 [DEBUG] contig 7725 to 11019 2017-11-14 09:45:27,946 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,946 [DEBUG] Moving from ref0445941.4e3 to ref0445941.5e5 (p=1) 2017-11-14 09:45:27,946 [DEBUG] unimproved gap 2017-11-14 09:45:27,946 [DEBUG] Moving from ref0445941.5e5 to ref0445941.5e3 (p=1) 2017-11-14 09:45:27,946 [DEBUG] contig 2017-11-14 09:45:27,946 [DEBUG] who? ref0445941.5e5 ref0445941.5e3 2017-11-14 09:45:27,946 [DEBUG] Grabbing contig between nodes ref0445941.5e5 & ref0445941.5e3 - [trim 0, 0] 2017-11-14 09:45:27,946 [DEBUG] contig 11276 to 14188 2017-11-14 09:45:27,946 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,946 [DEBUG] Moving from ref0445941.5e3 to ref0445941.6e5 (p=1) 2017-11-14 09:45:27,946 [DEBUG] unimproved gap 2017-11-14 09:45:27,946 [DEBUG] Moving from ref0445941.6e5 to ref0445941.6e3 (p=1) 2017-11-14 09:45:27,946 [DEBUG] contig 2017-11-14 09:45:27,947 [DEBUG] who? ref0445941.6e5 ref0445941.6e3 2017-11-14 09:45:27,947 [DEBUG] Grabbing contig between nodes ref0445941.6e5 & ref0445941.6e3 - [trim 0, 0] 2017-11-14 09:45:27,947 [DEBUG] contig 14310 to 17341 2017-11-14 09:45:27,947 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,947 [DEBUG] Moving from ref0445941.6e3 to ref0445941.7e5 (p=1) 2017-11-14 09:45:27,947 [DEBUG] unimproved gap 2017-11-14 09:45:27,947 [DEBUG] Moving from ref0445941.7e5 to ref0445941.7e3 (p=1) 2017-11-14 09:45:27,947 [DEBUG] contig 2017-11-14 09:45:27,947 [DEBUG] who? ref0445941.7e5 ref0445941.7e3 2017-11-14 09:45:27,947 [DEBUG] Grabbing contig between nodes ref0445941.7e5 & ref0445941.7e3 - [trim 0, 0] 2017-11-14 09:45:27,947 [DEBUG] contig 17519 to 17950 2017-11-14 09:45:27,947 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,947 [DEBUG] Moving from ref0445941.7e3 to ref0445941.8e5 (p=1) 2017-11-14 09:45:27,947 [DEBUG] unimproved gap 2017-11-14 09:45:27,948 [DEBUG] Moving from ref0445941.8e5 to ref0445941.8e3 (p=1) 2017-11-14 09:45:27,948 [DEBUG] contig 2017-11-14 09:45:27,948 [DEBUG] who? ref0445941.8e5 ref0445941.8e3 2017-11-14 09:45:27,948 [DEBUG] Grabbing contig between nodes ref0445941.8e5 & ref0445941.8e3 - [trim 0, 0] 2017-11-14 09:45:27,948 [DEBUG] contig 18505 to 19175 2017-11-14 09:45:27,948 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,948 [DEBUG] Moving from ref0445941.8e3 to ref0445941.9e5 (p=1) 2017-11-14 09:45:27,948 [DEBUG] unimproved gap 2017-11-14 09:45:27,948 [DEBUG] Moving from ref0445941.9e5 to ref0445941.9e3 (p=1) 2017-11-14 09:45:27,948 [DEBUG] contig 2017-11-14 09:45:27,948 [DEBUG] who? ref0445941.9e5 ref0445941.9e3 2017-11-14 09:45:27,948 [DEBUG] Grabbing contig between nodes ref0445941.9e5 & ref0445941.9e3 - [trim 0, 0] 2017-11-14 09:45:27,949 [DEBUG] contig 19411 to 20366 2017-11-14 09:45:27,949 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,949 [DEBUG] Moving from ref0445941.9e3 to ref0445941.10e5 (p=1) 2017-11-14 09:45:27,949 [DEBUG] unimproved gap 2017-11-14 09:45:27,949 [DEBUG] Moving from ref0445941.10e5 to ref0445941.10e3 (p=1) 2017-11-14 09:45:27,949 [DEBUG] contig 2017-11-14 09:45:27,949 [DEBUG] who? ref0445941.10e5 ref0445941.10e3 2017-11-14 09:45:27,949 [DEBUG] Grabbing contig between nodes ref0445941.10e5 & ref0445941.10e3 - [trim 0, 0] 2017-11-14 09:45:27,949 [DEBUG] contig 20421 to 20971 2017-11-14 09:45:27,949 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,949 [DEBUG] Moving from ref0445941.10e3 to ref0445941.11e5 (p=1) 2017-11-14 09:45:27,949 [DEBUG] unimproved gap 2017-11-14 09:45:27,949 [DEBUG] Moving from ref0445941.11e5 to ref0445941.11e3 (p=1) 2017-11-14 09:45:27,949 [DEBUG] contig 2017-11-14 09:45:27,950 [DEBUG] who? ref0445941.11e5 ref0445941.11e3 2017-11-14 09:45:27,950 [DEBUG] Grabbing contig between nodes ref0445941.11e5 & ref0445941.11e3 - [trim 0, 0] 2017-11-14 09:45:27,950 [DEBUG] contig 21491 to 21524 2017-11-14 09:45:27,950 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,950 [DEBUG] Moving from ref0445941.11e3 to ref0445941.12e5 (p=1) 2017-11-14 09:45:27,950 [DEBUG] unimproved gap 2017-11-14 09:45:27,950 [DEBUG] Moving from ref0445941.12e5 to ref0445941.12e3 (p=1) 2017-11-14 09:45:27,950 [DEBUG] contig 2017-11-14 09:45:27,950 [DEBUG] who? ref0445941.12e5 ref0445941.12e3 2017-11-14 09:45:27,950 [DEBUG] Grabbing contig between nodes ref0445941.12e5 & ref0445941.12e3 - [trim 0, 0] 2017-11-14 09:45:27,950 [DEBUG] contig 21619 to 30229 2017-11-14 09:45:27,950 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,950 [DEBUG] Moving from ref0445941.12e3 to ref0445941.13e5 (p=1) 2017-11-14 09:45:27,951 [DEBUG] unimproved gap 2017-11-14 09:45:27,951 [DEBUG] Moving from ref0445941.13e5 to ref0445941.13e3 (p=1) 2017-11-14 09:45:27,951 [DEBUG] contig 2017-11-14 09:45:27,951 [DEBUG] who? ref0445941.13e5 ref0445941.13e3 2017-11-14 09:45:27,951 [DEBUG] Grabbing contig between nodes ref0445941.13e5 & ref0445941.13e3 - [trim 0, 0] 2017-11-14 09:45:27,951 [DEBUG] contig 30355 to 31605 2017-11-14 09:45:27,951 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,951 [DEBUG] Moving from ref0445941.13e3 to ref0445941.14e5 (p=1) 2017-11-14 09:45:27,951 [DEBUG] unimproved gap 2017-11-14 09:45:27,951 [DEBUG] Moving from ref0445941.14e5 to ref0445941.14e3 (p=1) 2017-11-14 09:45:27,951 [DEBUG] contig 2017-11-14 09:45:27,951 [DEBUG] who? ref0445941.14e5 ref0445941.14e3 2017-11-14 09:45:27,951 [DEBUG] Grabbing contig between nodes ref0445941.14e5 & ref0445941.14e3 - [trim 0, 0] 2017-11-14 09:45:27,951 [DEBUG] contig 31643 to 31690 2017-11-14 09:45:27,952 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,952 [DEBUG] Moving from ref0445941.14e3 to ref0445941.15e5 (p=1) 2017-11-14 09:45:27,952 [DEBUG] unimproved gap 2017-11-14 09:45:27,952 [DEBUG] Moving from ref0445941.15e5 to ref0445941.15e3 (p=1) 2017-11-14 09:45:27,952 [DEBUG] contig 2017-11-14 09:45:27,952 [DEBUG] who? ref0445941.15e5 ref0445941.15e3 2017-11-14 09:45:27,952 [DEBUG] Grabbing contig between nodes ref0445941.15e5 & ref0445941.15e3 - [trim 0, 0] 2017-11-14 09:45:27,952 [DEBUG] contig 31806 to 31861 2017-11-14 09:45:27,952 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,952 [DEBUG] Moving from ref0445941.15e3 to ref0445941.16e5 (p=1) 2017-11-14 09:45:27,952 [DEBUG] unimproved gap 2017-11-14 09:45:27,952 [DEBUG] Moving from ref0445941.16e5 to ref0445941.16e3 (p=1) 2017-11-14 09:45:27,953 [DEBUG] contig 2017-11-14 09:45:27,953 [DEBUG] who? ref0445941.16e5 ref0445941.16e3 2017-11-14 09:45:27,953 [DEBUG] Grabbing contig between nodes ref0445941.16e5 & ref0445941.16e3 - [trim 0, 0] 2017-11-14 09:45:27,953 [DEBUG] contig 31998 to 32088 2017-11-14 09:45:27,953 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,953 [DEBUG] Moving from ref0445941.16e3 to ref0445941.17e5 (p=1) 2017-11-14 09:45:27,953 [DEBUG] unimproved gap 2017-11-14 09:45:27,953 [DEBUG] Moving from ref0445941.17e5 to ref0445941.17e3 (p=1) 2017-11-14 09:45:27,953 [DEBUG] contig 2017-11-14 09:45:27,953 [DEBUG] who? ref0445941.17e5 ref0445941.17e3 2017-11-14 09:45:27,953 [DEBUG] Grabbing contig between nodes ref0445941.17e5 & ref0445941.17e3 - [trim 0, 0] 2017-11-14 09:45:27,953 [DEBUG] contig 32266 to 32302 2017-11-14 09:45:27,953 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,953 [DEBUG] Moving from ref0445941.17e3 to ref0445941.18e5 (p=1) 2017-11-14 09:45:27,954 [DEBUG] unimproved gap 2017-11-14 09:45:27,954 [DEBUG] Moving from ref0445941.18e5 to ref0445941.18e3 (p=1) 2017-11-14 09:45:27,954 [DEBUG] contig 2017-11-14 09:45:27,954 [DEBUG] who? ref0445941.18e5 ref0445941.18e3 2017-11-14 09:45:27,954 [DEBUG] Grabbing contig between nodes ref0445941.18e5 & ref0445941.18e3 - [trim 0, 0] 2017-11-14 09:45:27,954 [DEBUG] contig 32441 to 32569 2017-11-14 09:45:27,954 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,954 [DEBUG] Moving from ref0445941.18e3 to ref0445941.19e5 (p=1) 2017-11-14 09:45:27,954 [DEBUG] unimproved gap 2017-11-14 09:45:27,954 [DEBUG] Moving from ref0445941.19e5 to ref0445941e3 (p=1) 2017-11-14 09:45:27,954 [DEBUG] contig 2017-11-14 09:45:27,954 [DEBUG] who? ref0445941.19e5 ref0445941e3 2017-11-14 09:45:27,954 [DEBUG] Grabbing contig between nodes ref0445941.19e5 & ref0445941e3 - [trim 0, 0] 2017-11-14 09:45:27,955 [DEBUG] contig 32631 to 37179 2017-11-14 09:45:27,955 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,955 [DEBUG] Contig 40 2017-11-14 09:45:27,957 [DEBUG] Moving from ref0163600e5 to ref0163600.0e3 (p=1) 2017-11-14 09:45:27,957 [DEBUG] contig 2017-11-14 09:45:27,957 [DEBUG] who? ref0163600e5 ref0163600.0e3 2017-11-14 09:45:27,957 [DEBUG] Grabbing contig between nodes ref0163600e5 & ref0163600.0e3 - [trim 0, 0] 2017-11-14 09:45:27,957 [DEBUG] contig 0 to 205 2017-11-14 09:45:27,957 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,958 [DEBUG] Moving from ref0163600.0e3 to ref0163600.1e5 (p=1) 2017-11-14 09:45:27,958 [DEBUG] unimproved gap 2017-11-14 09:45:27,958 [DEBUG] Moving from ref0163600.1e5 to ref0163600.1e3 (p=1) 2017-11-14 09:45:27,958 [DEBUG] contig 2017-11-14 09:45:27,958 [DEBUG] who? ref0163600.1e5 ref0163600.1e3 2017-11-14 09:45:27,958 [DEBUG] Grabbing contig between nodes ref0163600.1e5 & ref0163600.1e3 - [trim 0, 0] 2017-11-14 09:45:27,958 [DEBUG] contig 409 to 1281 2017-11-14 09:45:27,958 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,958 [DEBUG] Moving from ref0163600.1e3 to ref0163600.2e5 (p=1) 2017-11-14 09:45:27,958 [DEBUG] unimproved gap 2017-11-14 09:45:27,958 [DEBUG] Moving from ref0163600.2e5 to ref0163600.2e3 (p=1) 2017-11-14 09:45:27,958 [DEBUG] contig 2017-11-14 09:45:27,958 [DEBUG] who? ref0163600.2e5 ref0163600.2e3 2017-11-14 09:45:27,959 [DEBUG] Grabbing contig between nodes ref0163600.2e5 & ref0163600.2e3 - [trim 0, 0] 2017-11-14 09:45:27,959 [DEBUG] contig 1426 to 1478 2017-11-14 09:45:27,959 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,959 [DEBUG] Moving from ref0163600.2e3 to ref0163600.3e5 (p=1) 2017-11-14 09:45:27,959 [DEBUG] unimproved gap 2017-11-14 09:45:27,959 [DEBUG] Moving from ref0163600.3e5 to ref0163600.3e3 (p=1) 2017-11-14 09:45:27,959 [DEBUG] contig 2017-11-14 09:45:27,959 [DEBUG] who? ref0163600.3e5 ref0163600.3e3 2017-11-14 09:45:27,959 [DEBUG] Grabbing contig between nodes ref0163600.3e5 & ref0163600.3e3 - [trim 0, 0] 2017-11-14 09:45:27,959 [DEBUG] contig 1539 to 1583 2017-11-14 09:45:27,959 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,959 [DEBUG] Moving from ref0163600.3e3 to ref0163600.4e5 (p=1) 2017-11-14 09:45:27,959 [DEBUG] unimproved gap 2017-11-14 09:45:27,960 [DEBUG] Moving from ref0163600.4e5 to ref0163600.4e3 (p=1) 2017-11-14 09:45:27,960 [DEBUG] contig 2017-11-14 09:45:27,960 [DEBUG] who? ref0163600.4e5 ref0163600.4e3 2017-11-14 09:45:27,960 [DEBUG] Grabbing contig between nodes ref0163600.4e5 & ref0163600.4e3 - [trim 0, 0] 2017-11-14 09:45:27,960 [DEBUG] contig 1670 to 5845 2017-11-14 09:45:27,960 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,960 [DEBUG] Moving from ref0163600.4e3 to ref0163600.5e5 (p=1) 2017-11-14 09:45:27,960 [DEBUG] unimproved gap 2017-11-14 09:45:27,960 [DEBUG] Moving from ref0163600.5e5 to ref0163600.5e3 (p=1) 2017-11-14 09:45:27,960 [DEBUG] contig 2017-11-14 09:45:27,960 [DEBUG] who? ref0163600.5e5 ref0163600.5e3 2017-11-14 09:45:27,960 [DEBUG] Grabbing contig between nodes ref0163600.5e5 & ref0163600.5e3 - [trim 0, 0] 2017-11-14 09:45:27,961 [DEBUG] contig 6116 to 6157 2017-11-14 09:45:27,961 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,961 [DEBUG] Moving from ref0163600.5e3 to ref0163600.6e5 (p=1) 2017-11-14 09:45:27,961 [DEBUG] unimproved gap 2017-11-14 09:45:27,961 [DEBUG] Moving from ref0163600.6e5 to ref0163600.6e3 (p=1) 2017-11-14 09:45:27,961 [DEBUG] contig 2017-11-14 09:45:27,961 [DEBUG] who? ref0163600.6e5 ref0163600.6e3 2017-11-14 09:45:27,961 [DEBUG] Grabbing contig between nodes ref0163600.6e5 & ref0163600.6e3 - [trim 0, 0] 2017-11-14 09:45:27,961 [DEBUG] contig 6438 to 6791 2017-11-14 09:45:27,961 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,961 [DEBUG] Moving from ref0163600.6e3 to ref0163600.7e5 (p=1) 2017-11-14 09:45:27,961 [DEBUG] unimproved gap 2017-11-14 09:45:27,961 [DEBUG] Moving from ref0163600.7e5 to ref0163600.7e3 (p=1) 2017-11-14 09:45:27,961 [DEBUG] contig 2017-11-14 09:45:27,962 [DEBUG] who? ref0163600.7e5 ref0163600.7e3 2017-11-14 09:45:27,962 [DEBUG] Grabbing contig between nodes ref0163600.7e5 & ref0163600.7e3 - [trim 0, 0] 2017-11-14 09:45:27,962 [DEBUG] contig 6973 to 7050 2017-11-14 09:45:27,962 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,962 [DEBUG] Moving from ref0163600.7e3 to ref0163600.8e5 (p=1) 2017-11-14 09:45:27,962 [DEBUG] unimproved gap 2017-11-14 09:45:27,962 [DEBUG] Moving from ref0163600.8e5 to ref0163600.8e3 (p=1) 2017-11-14 09:45:27,962 [DEBUG] contig 2017-11-14 09:45:27,962 [DEBUG] who? ref0163600.8e5 ref0163600.8e3 2017-11-14 09:45:27,962 [DEBUG] Grabbing contig between nodes ref0163600.8e5 & ref0163600.8e3 - [trim 0, 0] 2017-11-14 09:45:27,962 [DEBUG] contig 7205 to 7619 2017-11-14 09:45:27,962 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,962 [DEBUG] Moving from ref0163600.8e3 to ref0163600.9e5 (p=1) 2017-11-14 09:45:27,963 [DEBUG] unimproved gap 2017-11-14 09:45:27,963 [DEBUG] Moving from ref0163600.9e5 to ref0163600.9e3 (p=1) 2017-11-14 09:45:27,963 [DEBUG] contig 2017-11-14 09:45:27,963 [DEBUG] who? ref0163600.9e5 ref0163600.9e3 2017-11-14 09:45:27,963 [DEBUG] Grabbing contig between nodes ref0163600.9e5 & ref0163600.9e3 - [trim 0, 0] 2017-11-14 09:45:27,963 [DEBUG] contig 7755 to 7839 2017-11-14 09:45:27,963 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,963 [DEBUG] Moving from ref0163600.9e3 to ref0163600.10e5 (p=1) 2017-11-14 09:45:27,963 [DEBUG] unimproved gap 2017-11-14 09:45:27,963 [DEBUG] Moving from ref0163600.10e5 to ref0163600.10e3 (p=1) 2017-11-14 09:45:27,963 [DEBUG] contig 2017-11-14 09:45:27,963 [DEBUG] who? ref0163600.10e5 ref0163600.10e3 2017-11-14 09:45:27,963 [DEBUG] Grabbing contig between nodes ref0163600.10e5 & ref0163600.10e3 - [trim 0, 0] 2017-11-14 09:45:27,964 [DEBUG] contig 7946 to 8358 2017-11-14 09:45:27,964 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,964 [DEBUG] Moving from ref0163600.10e3 to ref0163600.11e5 (p=1) 2017-11-14 09:45:27,964 [DEBUG] unimproved gap 2017-11-14 09:45:27,964 [DEBUG] Moving from ref0163600.11e5 to ref0163600.11e3 (p=1) 2017-11-14 09:45:27,964 [DEBUG] contig 2017-11-14 09:45:27,964 [DEBUG] who? ref0163600.11e5 ref0163600.11e3 2017-11-14 09:45:27,964 [DEBUG] Grabbing contig between nodes ref0163600.11e5 & ref0163600.11e3 - [trim 0, 0] 2017-11-14 09:45:27,964 [DEBUG] contig 8401 to 8846 2017-11-14 09:45:27,964 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,964 [DEBUG] Moving from ref0163600.11e3 to ref0163600.12e5 (p=1) 2017-11-14 09:45:27,964 [DEBUG] unimproved gap 2017-11-14 09:45:27,965 [DEBUG] Moving from ref0163600.12e5 to ref0163600.12e3 (p=1) 2017-11-14 09:45:27,965 [DEBUG] contig 2017-11-14 09:45:27,965 [DEBUG] who? ref0163600.12e5 ref0163600.12e3 2017-11-14 09:45:27,965 [DEBUG] Grabbing contig between nodes ref0163600.12e5 & ref0163600.12e3 - [trim 0, 0] 2017-11-14 09:45:27,965 [DEBUG] contig 9440 to 10506 2017-11-14 09:45:27,965 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,965 [DEBUG] Moving from ref0163600.12e3 to ref0163600.13e5 (p=1) 2017-11-14 09:45:27,965 [DEBUG] unimproved gap 2017-11-14 09:45:27,965 [DEBUG] Moving from ref0163600.13e5 to ref0163600.13e3 (p=1) 2017-11-14 09:45:27,965 [DEBUG] contig 2017-11-14 09:45:27,965 [DEBUG] who? ref0163600.13e5 ref0163600.13e3 2017-11-14 09:45:27,965 [DEBUG] Grabbing contig between nodes ref0163600.13e5 & ref0163600.13e3 - [trim 0, 0] 2017-11-14 09:45:27,965 [DEBUG] contig 10738 to 10875 2017-11-14 09:45:27,965 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,966 [DEBUG] Moving from ref0163600.13e3 to ref0163600.14e5 (p=1) 2017-11-14 09:45:27,966 [DEBUG] unimproved gap 2017-11-14 09:45:27,966 [DEBUG] Moving from ref0163600.14e5 to ref0163600.14e3 (p=1) 2017-11-14 09:45:27,966 [DEBUG] contig 2017-11-14 09:45:27,966 [DEBUG] who? ref0163600.14e5 ref0163600.14e3 2017-11-14 09:45:27,966 [DEBUG] Grabbing contig between nodes ref0163600.14e5 & ref0163600.14e3 - [trim 0, 0] 2017-11-14 09:45:27,966 [DEBUG] contig 10959 to 11560 2017-11-14 09:45:27,966 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,966 [DEBUG] Moving from ref0163600.14e3 to ref0163600.15e5 (p=1) 2017-11-14 09:45:27,966 [DEBUG] unimproved gap 2017-11-14 09:45:27,966 [DEBUG] Moving from ref0163600.15e5 to ref0163600.15e3 (p=1) 2017-11-14 09:45:27,966 [DEBUG] contig 2017-11-14 09:45:27,966 [DEBUG] who? ref0163600.15e5 ref0163600.15e3 2017-11-14 09:45:27,966 [DEBUG] Grabbing contig between nodes ref0163600.15e5 & ref0163600.15e3 - [trim 0, 0] 2017-11-14 09:45:27,967 [DEBUG] contig 11643 to 13601 2017-11-14 09:45:27,967 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,967 [DEBUG] Moving from ref0163600.15e3 to ref0163600.16e5 (p=1) 2017-11-14 09:45:27,967 [DEBUG] unimproved gap 2017-11-14 09:45:27,967 [DEBUG] Moving from ref0163600.16e5 to ref0163600.16e3 (p=1) 2017-11-14 09:45:27,967 [DEBUG] contig 2017-11-14 09:45:27,967 [DEBUG] who? ref0163600.16e5 ref0163600.16e3 2017-11-14 09:45:27,967 [DEBUG] Grabbing contig between nodes ref0163600.16e5 & ref0163600.16e3 - [trim 0, 0] 2017-11-14 09:45:27,967 [DEBUG] contig 13976 to 15116 2017-11-14 09:45:27,967 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,967 [DEBUG] Moving from ref0163600.16e3 to ref0163600.17e5 (p=1) 2017-11-14 09:45:27,967 [DEBUG] unimproved gap 2017-11-14 09:45:27,967 [DEBUG] Moving from ref0163600.17e5 to ref0163600.17e3 (p=1) 2017-11-14 09:45:27,968 [DEBUG] contig 2017-11-14 09:45:27,968 [DEBUG] who? ref0163600.17e5 ref0163600.17e3 2017-11-14 09:45:27,968 [DEBUG] Grabbing contig between nodes ref0163600.17e5 & ref0163600.17e3 - [trim 0, 0] 2017-11-14 09:45:27,968 [DEBUG] contig 15170 to 16716 2017-11-14 09:45:27,968 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,968 [DEBUG] Moving from ref0163600.17e3 to ref0163600.18e5 (p=1) 2017-11-14 09:45:27,968 [DEBUG] unimproved gap 2017-11-14 09:45:27,968 [DEBUG] Moving from ref0163600.18e5 to ref0163600.18e3 (p=1) 2017-11-14 09:45:27,968 [DEBUG] contig 2017-11-14 09:45:27,968 [DEBUG] who? ref0163600.18e5 ref0163600.18e3 2017-11-14 09:45:27,968 [DEBUG] Grabbing contig between nodes ref0163600.18e5 & ref0163600.18e3 - [trim 0, 0] 2017-11-14 09:45:27,968 [DEBUG] contig 16967 to 18110 2017-11-14 09:45:27,969 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,969 [DEBUG] Moving from ref0163600.18e3 to ref0163600.19e5 (p=1) 2017-11-14 09:45:27,969 [DEBUG] unimproved gap 2017-11-14 09:45:27,969 [DEBUG] Moving from ref0163600.19e5 to ref0163600e3 (p=1) 2017-11-14 09:45:27,969 [DEBUG] contig 2017-11-14 09:45:27,969 [DEBUG] who? ref0163600.19e5 ref0163600e3 2017-11-14 09:45:27,969 [DEBUG] Grabbing contig between nodes ref0163600.19e5 & ref0163600e3 - [trim 0, 0] 2017-11-14 09:45:27,969 [DEBUG] contig 18224 to 18637 2017-11-14 09:45:27,969 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,969 [DEBUG] Contig 41 2017-11-14 09:45:27,972 [DEBUG] Moving from ref0621742e3 to ref0621742.19e5 (p=1) 2017-11-14 09:45:27,972 [DEBUG] contig 2017-11-14 09:45:27,972 [DEBUG] who? ref0621742.19e5 ref0621742e3 2017-11-14 09:45:27,972 [DEBUG] Grabbing contig between nodes ref0621742.19e5 & ref0621742e3 - [trim 0, 0] 2017-11-14 09:45:27,972 [DEBUG] contig 30075 to 30689 2017-11-14 09:45:27,972 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,972 [DEBUG] Moving from ref0621742.19e5 to ref0621742.18e3 (p=1) 2017-11-14 09:45:27,972 [DEBUG] unimproved gap 2017-11-14 09:45:27,972 [DEBUG] Moving from ref0621742.18e3 to ref0621742.18e5 (p=1) 2017-11-14 09:45:27,972 [DEBUG] contig 2017-11-14 09:45:27,972 [DEBUG] who? ref0621742.18e5 ref0621742.18e3 2017-11-14 09:45:27,973 [DEBUG] Grabbing contig between nodes ref0621742.18e5 & ref0621742.18e3 - [trim 0, 0] 2017-11-14 09:45:27,973 [DEBUG] contig 27028 to 30021 2017-11-14 09:45:27,973 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,973 [DEBUG] Moving from ref0621742.18e5 to ref0621742.17e3 (p=1) 2017-11-14 09:45:27,973 [DEBUG] unimproved gap 2017-11-14 09:45:27,973 [DEBUG] Moving from ref0621742.17e3 to ref0621742.17e5 (p=1) 2017-11-14 09:45:27,973 [DEBUG] contig 2017-11-14 09:45:27,973 [DEBUG] who? ref0621742.17e5 ref0621742.17e3 2017-11-14 09:45:27,973 [DEBUG] Grabbing contig between nodes ref0621742.17e5 & ref0621742.17e3 - [trim 0, 0] 2017-11-14 09:45:27,973 [DEBUG] contig 26063 to 26529 2017-11-14 09:45:27,973 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,973 [DEBUG] Moving from ref0621742.17e5 to ref0621742.16e3 (p=1) 2017-11-14 09:45:27,973 [DEBUG] unimproved gap 2017-11-14 09:45:27,974 [DEBUG] Moving from ref0621742.16e3 to ref0621742.16e5 (p=1) 2017-11-14 09:45:27,974 [DEBUG] contig 2017-11-14 09:45:27,974 [DEBUG] who? ref0621742.16e5 ref0621742.16e3 2017-11-14 09:45:27,974 [DEBUG] Grabbing contig between nodes ref0621742.16e5 & ref0621742.16e3 - [trim 0, 0] 2017-11-14 09:45:27,974 [DEBUG] contig 25752 to 25820 2017-11-14 09:45:27,974 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,974 [DEBUG] Moving from ref0621742.16e5 to ref0621742.15e3 (p=1) 2017-11-14 09:45:27,974 [DEBUG] unimproved gap 2017-11-14 09:45:27,974 [DEBUG] Moving from ref0621742.15e3 to ref0621742.15e5 (p=1) 2017-11-14 09:45:27,974 [DEBUG] contig 2017-11-14 09:45:27,974 [DEBUG] who? ref0621742.15e5 ref0621742.15e3 2017-11-14 09:45:27,974 [DEBUG] Grabbing contig between nodes ref0621742.15e5 & ref0621742.15e3 - [trim 0, 0] 2017-11-14 09:45:27,974 [DEBUG] contig 23682 to 25660 2017-11-14 09:45:27,975 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,975 [DEBUG] Moving from ref0621742.15e5 to ref0621742.14e3 (p=1) 2017-11-14 09:45:27,975 [DEBUG] unimproved gap 2017-11-14 09:45:27,975 [DEBUG] Moving from ref0621742.14e3 to ref0621742.14e5 (p=1) 2017-11-14 09:45:27,975 [DEBUG] contig 2017-11-14 09:45:27,975 [DEBUG] who? ref0621742.14e5 ref0621742.14e3 2017-11-14 09:45:27,975 [DEBUG] Grabbing contig between nodes ref0621742.14e5 & ref0621742.14e3 - [trim 0, 0] 2017-11-14 09:45:27,975 [DEBUG] contig 20228 to 23226 2017-11-14 09:45:27,975 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,975 [DEBUG] Moving from ref0621742.14e5 to ref0621742.13e3 (p=1) 2017-11-14 09:45:27,975 [DEBUG] unimproved gap 2017-11-14 09:45:27,975 [DEBUG] Moving from ref0621742.13e3 to ref0621742.13e5 (p=1) 2017-11-14 09:45:27,975 [DEBUG] contig 2017-11-14 09:45:27,976 [DEBUG] who? ref0621742.13e5 ref0621742.13e3 2017-11-14 09:45:27,976 [DEBUG] Grabbing contig between nodes ref0621742.13e5 & ref0621742.13e3 - [trim 0, 0] 2017-11-14 09:45:27,976 [DEBUG] contig 17452 to 19981 2017-11-14 09:45:27,976 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,976 [DEBUG] Moving from ref0621742.13e5 to ref0621742.12e3 (p=1) 2017-11-14 09:45:27,976 [DEBUG] unimproved gap 2017-11-14 09:45:27,976 [DEBUG] Moving from ref0621742.12e3 to ref0621742.12e5 (p=1) 2017-11-14 09:45:27,976 [DEBUG] contig 2017-11-14 09:45:27,976 [DEBUG] who? ref0621742.12e5 ref0621742.12e3 2017-11-14 09:45:27,976 [DEBUG] Grabbing contig between nodes ref0621742.12e5 & ref0621742.12e3 - [trim 0, 0] 2017-11-14 09:45:27,976 [DEBUG] contig 16589 to 17303 2017-11-14 09:45:27,976 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,976 [DEBUG] Moving from ref0621742.12e5 to ref0621742.11e3 (p=1) 2017-11-14 09:45:27,977 [DEBUG] unimproved gap 2017-11-14 09:45:27,977 [DEBUG] Moving from ref0621742.11e3 to ref0621742.11e5 (p=1) 2017-11-14 09:45:27,977 [DEBUG] contig 2017-11-14 09:45:27,977 [DEBUG] who? ref0621742.11e5 ref0621742.11e3 2017-11-14 09:45:27,977 [DEBUG] Grabbing contig between nodes ref0621742.11e5 & ref0621742.11e3 - [trim 0, 0] 2017-11-14 09:45:27,977 [DEBUG] contig 16208 to 16241 2017-11-14 09:45:27,977 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,977 [DEBUG] Moving from ref0621742.11e5 to ref0621742.10e3 (p=1) 2017-11-14 09:45:27,977 [DEBUG] unimproved gap 2017-11-14 09:45:27,977 [DEBUG] Moving from ref0621742.10e3 to ref0621742.10e5 (p=1) 2017-11-14 09:45:27,977 [DEBUG] contig 2017-11-14 09:45:27,977 [DEBUG] who? ref0621742.10e5 ref0621742.10e3 2017-11-14 09:45:27,977 [DEBUG] Grabbing contig between nodes ref0621742.10e5 & ref0621742.10e3 - [trim 0, 0] 2017-11-14 09:45:27,978 [DEBUG] contig 13982 to 15932 2017-11-14 09:45:27,978 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,978 [DEBUG] Moving from ref0621742.10e5 to ref0621742.9e3 (p=1) 2017-11-14 09:45:27,978 [DEBUG] unimproved gap 2017-11-14 09:45:27,978 [DEBUG] Moving from ref0621742.9e3 to ref0621742.9e5 (p=1) 2017-11-14 09:45:27,978 [DEBUG] contig 2017-11-14 09:45:27,978 [DEBUG] who? ref0621742.9e5 ref0621742.9e3 2017-11-14 09:45:27,978 [DEBUG] Grabbing contig between nodes ref0621742.9e5 & ref0621742.9e3 - [trim 0, 0] 2017-11-14 09:45:27,978 [DEBUG] contig 13324 to 13449 2017-11-14 09:45:27,978 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,978 [DEBUG] Moving from ref0621742.9e5 to ref0621742.8e3 (p=1) 2017-11-14 09:45:27,978 [DEBUG] unimproved gap 2017-11-14 09:45:27,978 [DEBUG] Moving from ref0621742.8e3 to ref0621742.8e5 (p=1) 2017-11-14 09:45:27,978 [DEBUG] contig 2017-11-14 09:45:27,979 [DEBUG] who? ref0621742.8e5 ref0621742.8e3 2017-11-14 09:45:27,979 [DEBUG] Grabbing contig between nodes ref0621742.8e5 & ref0621742.8e3 - [trim 0, 0] 2017-11-14 09:45:27,979 [DEBUG] contig 12851 to 13095 2017-11-14 09:45:27,979 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,979 [DEBUG] Moving from ref0621742.8e5 to ref0621742.7e3 (p=1) 2017-11-14 09:45:27,979 [DEBUG] unimproved gap 2017-11-14 09:45:27,979 [DEBUG] Moving from ref0621742.7e3 to ref0621742.7e5 (p=1) 2017-11-14 09:45:27,979 [DEBUG] contig 2017-11-14 09:45:27,979 [DEBUG] who? ref0621742.7e5 ref0621742.7e3 2017-11-14 09:45:27,979 [DEBUG] Grabbing contig between nodes ref0621742.7e5 & ref0621742.7e3 - [trim 0, 0] 2017-11-14 09:45:27,979 [DEBUG] contig 10756 to 12402 2017-11-14 09:45:27,979 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,979 [DEBUG] Moving from ref0621742.7e5 to ref0621742.6e3 (p=1) 2017-11-14 09:45:27,980 [DEBUG] unimproved gap 2017-11-14 09:45:27,980 [DEBUG] Moving from ref0621742.6e3 to ref0621742.6e5 (p=1) 2017-11-14 09:45:27,980 [DEBUG] contig 2017-11-14 09:45:27,980 [DEBUG] who? ref0621742.6e5 ref0621742.6e3 2017-11-14 09:45:27,980 [DEBUG] Grabbing contig between nodes ref0621742.6e5 & ref0621742.6e3 - [trim 0, 0] 2017-11-14 09:45:27,980 [DEBUG] contig 10350 to 10514 2017-11-14 09:45:27,980 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,980 [DEBUG] Moving from ref0621742.6e5 to ref0621742.5e3 (p=1) 2017-11-14 09:45:27,980 [DEBUG] unimproved gap 2017-11-14 09:45:27,980 [DEBUG] Moving from ref0621742.5e3 to ref0621742.5e5 (p=1) 2017-11-14 09:45:27,980 [DEBUG] contig 2017-11-14 09:45:27,980 [DEBUG] who? ref0621742.5e5 ref0621742.5e3 2017-11-14 09:45:27,980 [DEBUG] Grabbing contig between nodes ref0621742.5e5 & ref0621742.5e3 - [trim 0, 0] 2017-11-14 09:45:27,981 [DEBUG] contig 8908 to 9782 2017-11-14 09:45:27,981 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,981 [DEBUG] Moving from ref0621742.5e5 to ref0621742.4e3 (p=1) 2017-11-14 09:45:27,981 [DEBUG] unimproved gap 2017-11-14 09:45:27,981 [DEBUG] Moving from ref0621742.4e3 to ref0621742.4e5 (p=1) 2017-11-14 09:45:27,981 [DEBUG] contig 2017-11-14 09:45:27,981 [DEBUG] who? ref0621742.4e5 ref0621742.4e3 2017-11-14 09:45:27,981 [DEBUG] Grabbing contig between nodes ref0621742.4e5 & ref0621742.4e3 - [trim 0, 0] 2017-11-14 09:45:27,981 [DEBUG] contig 4747 to 8557 2017-11-14 09:45:27,981 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,981 [DEBUG] Moving from ref0621742.4e5 to ref0621742.3e3 (p=1) 2017-11-14 09:45:27,981 [DEBUG] unimproved gap 2017-11-14 09:45:27,981 [DEBUG] Moving from ref0621742.3e3 to ref0621742.3e5 (p=1) 2017-11-14 09:45:27,982 [DEBUG] contig 2017-11-14 09:45:27,982 [DEBUG] who? ref0621742.3e5 ref0621742.3e3 2017-11-14 09:45:27,982 [DEBUG] Grabbing contig between nodes ref0621742.3e5 & ref0621742.3e3 - [trim 0, 0] 2017-11-14 09:45:27,982 [DEBUG] contig 3345 to 4328 2017-11-14 09:45:27,982 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,982 [DEBUG] Moving from ref0621742.3e5 to ref0621742.2e3 (p=1) 2017-11-14 09:45:27,982 [DEBUG] unimproved gap 2017-11-14 09:45:27,982 [DEBUG] Moving from ref0621742.2e3 to ref0621742.2e5 (p=1) 2017-11-14 09:45:27,982 [DEBUG] contig 2017-11-14 09:45:27,982 [DEBUG] who? ref0621742.2e5 ref0621742.2e3 2017-11-14 09:45:27,982 [DEBUG] Grabbing contig between nodes ref0621742.2e5 & ref0621742.2e3 - [trim 0, 0] 2017-11-14 09:45:27,982 [DEBUG] contig 1447 to 3101 2017-11-14 09:45:27,982 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,983 [DEBUG] Moving from ref0621742.2e5 to ref0621742.1e3 (p=1) 2017-11-14 09:45:27,983 [DEBUG] unimproved gap 2017-11-14 09:45:27,983 [DEBUG] Moving from ref0621742.1e3 to ref0621742.1e5 (p=1) 2017-11-14 09:45:27,983 [DEBUG] contig 2017-11-14 09:45:27,983 [DEBUG] who? ref0621742.1e5 ref0621742.1e3 2017-11-14 09:45:27,983 [DEBUG] Grabbing contig between nodes ref0621742.1e5 & ref0621742.1e3 - [trim 0, 0] 2017-11-14 09:45:27,983 [DEBUG] contig 1110 to 1376 2017-11-14 09:45:27,983 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,983 [DEBUG] Moving from ref0621742.1e5 to ref0621742.0e3 (p=1) 2017-11-14 09:45:27,983 [DEBUG] unimproved gap 2017-11-14 09:45:27,983 [DEBUG] Moving from ref0621742.0e3 to ref0621742e5 (p=1) 2017-11-14 09:45:27,983 [DEBUG] contig 2017-11-14 09:45:27,983 [DEBUG] who? ref0621742e5 ref0621742.0e3 2017-11-14 09:45:27,984 [DEBUG] Grabbing contig between nodes ref0621742e5 & ref0621742.0e3 - [trim 0, 0] 2017-11-14 09:45:27,984 [DEBUG] contig 0 to 778 2017-11-14 09:45:27,984 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,984 [DEBUG] FirstFlipping 41 2017-11-14 09:45:27,984 [DEBUG] Contig 42 2017-11-14 09:45:27,987 [DEBUG] Moving from ref0517657e5 to ref0517657.0e3 (p=1) 2017-11-14 09:45:27,987 [DEBUG] contig 2017-11-14 09:45:27,987 [DEBUG] who? ref0517657e5 ref0517657.0e3 2017-11-14 09:45:27,987 [DEBUG] Grabbing contig between nodes ref0517657e5 & ref0517657.0e3 - [trim 0, 0] 2017-11-14 09:45:27,987 [DEBUG] contig 0 to 99 2017-11-14 09:45:27,987 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,987 [DEBUG] Moving from ref0517657.0e3 to ref0517657.1e5 (p=1) 2017-11-14 09:45:27,987 [DEBUG] unimproved gap 2017-11-14 09:45:27,987 [DEBUG] Moving from ref0517657.1e5 to ref0517657.1e3 (p=1) 2017-11-14 09:45:27,987 [DEBUG] contig 2017-11-14 09:45:27,987 [DEBUG] who? ref0517657.1e5 ref0517657.1e3 2017-11-14 09:45:27,987 [DEBUG] Grabbing contig between nodes ref0517657.1e5 & ref0517657.1e3 - [trim 0, 0] 2017-11-14 09:45:27,987 [DEBUG] contig 179 to 512 2017-11-14 09:45:27,988 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,988 [DEBUG] Moving from ref0517657.1e3 to ref0517657.2e5 (p=1) 2017-11-14 09:45:27,988 [DEBUG] unimproved gap 2017-11-14 09:45:27,988 [DEBUG] Moving from ref0517657.2e5 to ref0517657.2e3 (p=1) 2017-11-14 09:45:27,988 [DEBUG] contig 2017-11-14 09:45:27,988 [DEBUG] who? ref0517657.2e5 ref0517657.2e3 2017-11-14 09:45:27,988 [DEBUG] Grabbing contig between nodes ref0517657.2e5 & ref0517657.2e3 - [trim 0, 0] 2017-11-14 09:45:27,988 [DEBUG] contig 930 to 978 2017-11-14 09:45:27,988 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,988 [DEBUG] Moving from ref0517657.2e3 to ref0517657.3e5 (p=1) 2017-11-14 09:45:27,988 [DEBUG] unimproved gap 2017-11-14 09:45:27,988 [DEBUG] Moving from ref0517657.3e5 to ref0517657.3e3 (p=1) 2017-11-14 09:45:27,989 [DEBUG] contig 2017-11-14 09:45:27,989 [DEBUG] who? ref0517657.3e5 ref0517657.3e3 2017-11-14 09:45:27,989 [DEBUG] Grabbing contig between nodes ref0517657.3e5 & ref0517657.3e3 - [trim 0, 0] 2017-11-14 09:45:27,989 [DEBUG] contig 1216 to 1730 2017-11-14 09:45:27,989 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,989 [DEBUG] Moving from ref0517657.3e3 to ref0517657.4e5 (p=1) 2017-11-14 09:45:27,989 [DEBUG] unimproved gap 2017-11-14 09:45:27,989 [DEBUG] Moving from ref0517657.4e5 to ref0517657.4e3 (p=1) 2017-11-14 09:45:27,989 [DEBUG] contig 2017-11-14 09:45:27,989 [DEBUG] who? ref0517657.4e5 ref0517657.4e3 2017-11-14 09:45:27,989 [DEBUG] Grabbing contig between nodes ref0517657.4e5 & ref0517657.4e3 - [trim 0, 0] 2017-11-14 09:45:27,989 [DEBUG] contig 1889 to 6440 2017-11-14 09:45:27,989 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,990 [DEBUG] Moving from ref0517657.4e3 to ref0517657.5e5 (p=1) 2017-11-14 09:45:27,990 [DEBUG] unimproved gap 2017-11-14 09:45:27,990 [DEBUG] Moving from ref0517657.5e5 to ref0517657.5e3 (p=1) 2017-11-14 09:45:27,990 [DEBUG] contig 2017-11-14 09:45:27,990 [DEBUG] who? ref0517657.5e5 ref0517657.5e3 2017-11-14 09:45:27,990 [DEBUG] Grabbing contig between nodes ref0517657.5e5 & ref0517657.5e3 - [trim 0, 0] 2017-11-14 09:45:27,990 [DEBUG] contig 6546 to 7550 2017-11-14 09:45:27,990 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,990 [DEBUG] Moving from ref0517657.5e3 to ref0517657.6e5 (p=1) 2017-11-14 09:45:27,990 [DEBUG] unimproved gap 2017-11-14 09:45:27,990 [DEBUG] Moving from ref0517657.6e5 to ref0517657.6e3 (p=1) 2017-11-14 09:45:27,990 [DEBUG] contig 2017-11-14 09:45:27,990 [DEBUG] who? ref0517657.6e5 ref0517657.6e3 2017-11-14 09:45:27,990 [DEBUG] Grabbing contig between nodes ref0517657.6e5 & ref0517657.6e3 - [trim 0, 0] 2017-11-14 09:45:27,991 [DEBUG] contig 7606 to 7655 2017-11-14 09:45:27,991 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,991 [DEBUG] Moving from ref0517657.6e3 to ref0517657.7e5 (p=1) 2017-11-14 09:45:27,991 [DEBUG] unimproved gap 2017-11-14 09:45:27,991 [DEBUG] Moving from ref0517657.7e5 to ref0517657.7e3 (p=1) 2017-11-14 09:45:27,991 [DEBUG] contig 2017-11-14 09:45:27,991 [DEBUG] who? ref0517657.7e5 ref0517657.7e3 2017-11-14 09:45:27,991 [DEBUG] Grabbing contig between nodes ref0517657.7e5 & ref0517657.7e3 - [trim 0, 0] 2017-11-14 09:45:27,991 [DEBUG] contig 7748 to 8035 2017-11-14 09:45:27,991 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,991 [DEBUG] Moving from ref0517657.7e3 to ref0517657.8e5 (p=1) 2017-11-14 09:45:27,991 [DEBUG] unimproved gap 2017-11-14 09:45:27,991 [DEBUG] Moving from ref0517657.8e5 to ref0517657.8e3 (p=1) 2017-11-14 09:45:27,992 [DEBUG] contig 2017-11-14 09:45:27,992 [DEBUG] who? ref0517657.8e5 ref0517657.8e3 2017-11-14 09:45:27,992 [DEBUG] Grabbing contig between nodes ref0517657.8e5 & ref0517657.8e3 - [trim 0, 0] 2017-11-14 09:45:27,992 [DEBUG] contig 8150 to 8497 2017-11-14 09:45:27,992 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,992 [DEBUG] Moving from ref0517657.8e3 to ref0517657.9e5 (p=1) 2017-11-14 09:45:27,992 [DEBUG] unimproved gap 2017-11-14 09:45:27,992 [DEBUG] Moving from ref0517657.9e5 to ref0517657.9e3 (p=1) 2017-11-14 09:45:27,992 [DEBUG] contig 2017-11-14 09:45:27,992 [DEBUG] who? ref0517657.9e5 ref0517657.9e3 2017-11-14 09:45:27,992 [DEBUG] Grabbing contig between nodes ref0517657.9e5 & ref0517657.9e3 - [trim 0, 0] 2017-11-14 09:45:27,992 [DEBUG] contig 8623 to 8757 2017-11-14 09:45:27,993 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,993 [DEBUG] Moving from ref0517657.9e3 to ref0517657.10e5 (p=1) 2017-11-14 09:45:27,993 [DEBUG] unimproved gap 2017-11-14 09:45:27,993 [DEBUG] Moving from ref0517657.10e5 to ref0517657.10e3 (p=1) 2017-11-14 09:45:27,993 [DEBUG] contig 2017-11-14 09:45:27,993 [DEBUG] who? ref0517657.10e5 ref0517657.10e3 2017-11-14 09:45:27,993 [DEBUG] Grabbing contig between nodes ref0517657.10e5 & ref0517657.10e3 - [trim 0, 0] 2017-11-14 09:45:27,993 [DEBUG] contig 8988 to 9061 2017-11-14 09:45:27,993 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,993 [DEBUG] Moving from ref0517657.10e3 to ref0517657.11e5 (p=1) 2017-11-14 09:45:27,993 [DEBUG] unimproved gap 2017-11-14 09:45:27,993 [DEBUG] Moving from ref0517657.11e5 to ref0517657.11e3 (p=1) 2017-11-14 09:45:27,993 [DEBUG] contig 2017-11-14 09:45:27,993 [DEBUG] who? ref0517657.11e5 ref0517657.11e3 2017-11-14 09:45:27,994 [DEBUG] Grabbing contig between nodes ref0517657.11e5 & ref0517657.11e3 - [trim 0, 0] 2017-11-14 09:45:27,994 [DEBUG] contig 9293 to 9824 2017-11-14 09:45:27,994 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,994 [DEBUG] Moving from ref0517657.11e3 to ref0517657.12e5 (p=1) 2017-11-14 09:45:27,994 [DEBUG] unimproved gap 2017-11-14 09:45:27,994 [DEBUG] Moving from ref0517657.12e5 to ref0517657.12e3 (p=1) 2017-11-14 09:45:27,994 [DEBUG] contig 2017-11-14 09:45:27,994 [DEBUG] who? ref0517657.12e5 ref0517657.12e3 2017-11-14 09:45:27,994 [DEBUG] Grabbing contig between nodes ref0517657.12e5 & ref0517657.12e3 - [trim 0, 0] 2017-11-14 09:45:27,994 [DEBUG] contig 10067 to 10703 2017-11-14 09:45:27,994 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,994 [DEBUG] Moving from ref0517657.12e3 to ref0517657.13e5 (p=1) 2017-11-14 09:45:27,994 [DEBUG] unimproved gap 2017-11-14 09:45:27,995 [DEBUG] Moving from ref0517657.13e5 to ref0517657.13e3 (p=1) 2017-11-14 09:45:27,995 [DEBUG] contig 2017-11-14 09:45:27,995 [DEBUG] who? ref0517657.13e5 ref0517657.13e3 2017-11-14 09:45:27,995 [DEBUG] Grabbing contig between nodes ref0517657.13e5 & ref0517657.13e3 - [trim 0, 0] 2017-11-14 09:45:27,995 [DEBUG] contig 11070 to 11102 2017-11-14 09:45:27,995 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,995 [DEBUG] Moving from ref0517657.13e3 to ref0517657.14e5 (p=1) 2017-11-14 09:45:27,995 [DEBUG] unimproved gap 2017-11-14 09:45:27,995 [DEBUG] Moving from ref0517657.14e5 to ref0517657.14e3 (p=1) 2017-11-14 09:45:27,995 [DEBUG] contig 2017-11-14 09:45:27,995 [DEBUG] who? ref0517657.14e5 ref0517657.14e3 2017-11-14 09:45:27,995 [DEBUG] Grabbing contig between nodes ref0517657.14e5 & ref0517657.14e3 - [trim 0, 0] 2017-11-14 09:45:27,995 [DEBUG] contig 11290 to 11347 2017-11-14 09:45:27,996 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,996 [DEBUG] Moving from ref0517657.14e3 to ref0517657.15e5 (p=1) 2017-11-14 09:45:27,996 [DEBUG] unimproved gap 2017-11-14 09:45:27,996 [DEBUG] Moving from ref0517657.15e5 to ref0517657.15e3 (p=1) 2017-11-14 09:45:27,996 [DEBUG] contig 2017-11-14 09:45:27,996 [DEBUG] who? ref0517657.15e5 ref0517657.15e3 2017-11-14 09:45:27,996 [DEBUG] Grabbing contig between nodes ref0517657.15e5 & ref0517657.15e3 - [trim 0, 0] 2017-11-14 09:45:27,996 [DEBUG] contig 11654 to 11744 2017-11-14 09:45:27,996 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,996 [DEBUG] Moving from ref0517657.15e3 to ref0517657.16e5 (p=1) 2017-11-14 09:45:27,996 [DEBUG] unimproved gap 2017-11-14 09:45:27,996 [DEBUG] Moving from ref0517657.16e5 to ref0517657.16e3 (p=1) 2017-11-14 09:45:27,997 [DEBUG] contig 2017-11-14 09:45:27,997 [DEBUG] who? ref0517657.16e5 ref0517657.16e3 2017-11-14 09:45:27,997 [DEBUG] Grabbing contig between nodes ref0517657.16e5 & ref0517657.16e3 - [trim 0, 0] 2017-11-14 09:45:27,997 [DEBUG] contig 12175 to 12709 2017-11-14 09:45:27,997 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,997 [DEBUG] Moving from ref0517657.16e3 to ref0517657.17e5 (p=1) 2017-11-14 09:45:27,997 [DEBUG] unimproved gap 2017-11-14 09:45:27,997 [DEBUG] Moving from ref0517657.17e5 to ref0517657.17e3 (p=1) 2017-11-14 09:45:27,997 [DEBUG] contig 2017-11-14 09:45:27,997 [DEBUG] who? ref0517657.17e5 ref0517657.17e3 2017-11-14 09:45:27,997 [DEBUG] Grabbing contig between nodes ref0517657.17e5 & ref0517657.17e3 - [trim 0, 0] 2017-11-14 09:45:27,997 [DEBUG] contig 12759 to 12799 2017-11-14 09:45:27,997 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,997 [DEBUG] Moving from ref0517657.17e3 to ref0517657.18e5 (p=1) 2017-11-14 09:45:27,998 [DEBUG] unimproved gap 2017-11-14 09:45:27,998 [DEBUG] Moving from ref0517657.18e5 to ref0517657.18e3 (p=1) 2017-11-14 09:45:27,998 [DEBUG] contig 2017-11-14 09:45:27,998 [DEBUG] who? ref0517657.18e5 ref0517657.18e3 2017-11-14 09:45:27,998 [DEBUG] Grabbing contig between nodes ref0517657.18e5 & ref0517657.18e3 - [trim 0, 0] 2017-11-14 09:45:27,998 [DEBUG] contig 13323 to 13563 2017-11-14 09:45:27,998 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,998 [DEBUG] Moving from ref0517657.18e3 to ref0517657.19e5 (p=1) 2017-11-14 09:45:27,998 [DEBUG] unimproved gap 2017-11-14 09:45:27,998 [DEBUG] Moving from ref0517657.19e5 to ref0517657e3 (p=1) 2017-11-14 09:45:27,998 [DEBUG] contig 2017-11-14 09:45:27,998 [DEBUG] who? ref0517657.19e5 ref0517657e3 2017-11-14 09:45:27,998 [DEBUG] Grabbing contig between nodes ref0517657.19e5 & ref0517657e3 - [trim 0, 0] 2017-11-14 09:45:27,999 [DEBUG] contig 13676 to 13770 2017-11-14 09:45:27,999 [DEBUG] trimming 0 and 0 2017-11-14 09:45:27,999 [DEBUG] Contig 43 2017-11-14 09:45:28,001 [DEBUG] Moving from ref0606503e5 to ref0606503.0e3 (p=1) 2017-11-14 09:45:28,001 [DEBUG] contig 2017-11-14 09:45:28,001 [DEBUG] who? ref0606503e5 ref0606503.0e3 2017-11-14 09:45:28,001 [DEBUG] Grabbing contig between nodes ref0606503e5 & ref0606503.0e3 - [trim 0, 0] 2017-11-14 09:45:28,001 [DEBUG] contig 0 to 78 2017-11-14 09:45:28,001 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,001 [DEBUG] Moving from ref0606503.0e3 to ref0606503.1e5 (p=1) 2017-11-14 09:45:28,002 [DEBUG] unimproved gap 2017-11-14 09:45:28,002 [DEBUG] Moving from ref0606503.1e5 to ref0606503.1e3 (p=1) 2017-11-14 09:45:28,002 [DEBUG] contig 2017-11-14 09:45:28,002 [DEBUG] who? ref0606503.1e5 ref0606503.1e3 2017-11-14 09:45:28,002 [DEBUG] Grabbing contig between nodes ref0606503.1e5 & ref0606503.1e3 - [trim 0, 0] 2017-11-14 09:45:28,002 [DEBUG] contig 477 to 792 2017-11-14 09:45:28,002 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,002 [DEBUG] Moving from ref0606503.1e3 to ref0606503.2e5 (p=1) 2017-11-14 09:45:28,002 [DEBUG] unimproved gap 2017-11-14 09:45:28,002 [DEBUG] Moving from ref0606503.2e5 to ref0606503.2e3 (p=1) 2017-11-14 09:45:28,002 [DEBUG] contig 2017-11-14 09:45:28,002 [DEBUG] who? ref0606503.2e5 ref0606503.2e3 2017-11-14 09:45:28,002 [DEBUG] Grabbing contig between nodes ref0606503.2e5 & ref0606503.2e3 - [trim 0, 0] 2017-11-14 09:45:28,003 [DEBUG] contig 1161 to 1371 2017-11-14 09:45:28,003 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,003 [DEBUG] Moving from ref0606503.2e3 to ref0606503.3e5 (p=1) 2017-11-14 09:45:28,003 [DEBUG] unimproved gap 2017-11-14 09:45:28,003 [DEBUG] Moving from ref0606503.3e5 to ref0606503.3e3 (p=1) 2017-11-14 09:45:28,003 [DEBUG] contig 2017-11-14 09:45:28,003 [DEBUG] who? ref0606503.3e5 ref0606503.3e3 2017-11-14 09:45:28,003 [DEBUG] Grabbing contig between nodes ref0606503.3e5 & ref0606503.3e3 - [trim 0, 0] 2017-11-14 09:45:28,003 [DEBUG] contig 1491 to 7478 2017-11-14 09:45:28,003 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,003 [DEBUG] Moving from ref0606503.3e3 to ref0606503.4e5 (p=1) 2017-11-14 09:45:28,003 [DEBUG] unimproved gap 2017-11-14 09:45:28,003 [DEBUG] Moving from ref0606503.4e5 to ref0606503.4e3 (p=1) 2017-11-14 09:45:28,004 [DEBUG] contig 2017-11-14 09:45:28,004 [DEBUG] who? ref0606503.4e5 ref0606503.4e3 2017-11-14 09:45:28,004 [DEBUG] Grabbing contig between nodes ref0606503.4e5 & ref0606503.4e3 - [trim 0, 0] 2017-11-14 09:45:28,004 [DEBUG] contig 7782 to 16074 2017-11-14 09:45:28,004 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,004 [DEBUG] Moving from ref0606503.4e3 to ref0606503.5e5 (p=1) 2017-11-14 09:45:28,004 [DEBUG] unimproved gap 2017-11-14 09:45:28,004 [DEBUG] Moving from ref0606503.5e5 to ref0606503.5e3 (p=1) 2017-11-14 09:45:28,004 [DEBUG] contig 2017-11-14 09:45:28,004 [DEBUG] who? ref0606503.5e5 ref0606503.5e3 2017-11-14 09:45:28,004 [DEBUG] Grabbing contig between nodes ref0606503.5e5 & ref0606503.5e3 - [trim 0, 0] 2017-11-14 09:45:28,004 [DEBUG] contig 16215 to 17332 2017-11-14 09:45:28,004 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,005 [DEBUG] Moving from ref0606503.5e3 to ref0606503.6e5 (p=1) 2017-11-14 09:45:28,005 [DEBUG] unimproved gap 2017-11-14 09:45:28,005 [DEBUG] Moving from ref0606503.6e5 to ref0606503.6e3 (p=1) 2017-11-14 09:45:28,005 [DEBUG] contig 2017-11-14 09:45:28,005 [DEBUG] who? ref0606503.6e5 ref0606503.6e3 2017-11-14 09:45:28,005 [DEBUG] Grabbing contig between nodes ref0606503.6e5 & ref0606503.6e3 - [trim 0, 0] 2017-11-14 09:45:28,005 [DEBUG] contig 17542 to 21755 2017-11-14 09:45:28,005 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,005 [DEBUG] Moving from ref0606503.6e3 to ref0606503.7e5 (p=1) 2017-11-14 09:45:28,005 [DEBUG] unimproved gap 2017-11-14 09:45:28,005 [DEBUG] Moving from ref0606503.7e5 to ref0606503.7e3 (p=1) 2017-11-14 09:45:28,005 [DEBUG] contig 2017-11-14 09:45:28,005 [DEBUG] who? ref0606503.7e5 ref0606503.7e3 2017-11-14 09:45:28,005 [DEBUG] Grabbing contig between nodes ref0606503.7e5 & ref0606503.7e3 - [trim 0, 0] 2017-11-14 09:45:28,006 [DEBUG] contig 22317 to 22433 2017-11-14 09:45:28,006 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,006 [DEBUG] Moving from ref0606503.7e3 to ref0606503.8e5 (p=1) 2017-11-14 09:45:28,006 [DEBUG] unimproved gap 2017-11-14 09:45:28,006 [DEBUG] Moving from ref0606503.8e5 to ref0606503.8e3 (p=1) 2017-11-14 09:45:28,006 [DEBUG] contig 2017-11-14 09:45:28,006 [DEBUG] who? ref0606503.8e5 ref0606503.8e3 2017-11-14 09:45:28,006 [DEBUG] Grabbing contig between nodes ref0606503.8e5 & ref0606503.8e3 - [trim 0, 0] 2017-11-14 09:45:28,006 [DEBUG] contig 22919 to 23008 2017-11-14 09:45:28,006 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,006 [DEBUG] Moving from ref0606503.8e3 to ref0606503.9e5 (p=1) 2017-11-14 09:45:28,006 [DEBUG] unimproved gap 2017-11-14 09:45:28,006 [DEBUG] Moving from ref0606503.9e5 to ref0606503.9e3 (p=1) 2017-11-14 09:45:28,007 [DEBUG] contig 2017-11-14 09:45:28,007 [DEBUG] who? ref0606503.9e5 ref0606503.9e3 2017-11-14 09:45:28,007 [DEBUG] Grabbing contig between nodes ref0606503.9e5 & ref0606503.9e3 - [trim 0, 0] 2017-11-14 09:45:28,007 [DEBUG] contig 23227 to 24184 2017-11-14 09:45:28,007 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,007 [DEBUG] Moving from ref0606503.9e3 to ref0606503.10e5 (p=1) 2017-11-14 09:45:28,007 [DEBUG] unimproved gap 2017-11-14 09:45:28,007 [DEBUG] Moving from ref0606503.10e5 to ref0606503.10e3 (p=1) 2017-11-14 09:45:28,007 [DEBUG] contig 2017-11-14 09:45:28,007 [DEBUG] who? ref0606503.10e5 ref0606503.10e3 2017-11-14 09:45:28,007 [DEBUG] Grabbing contig between nodes ref0606503.10e5 & ref0606503.10e3 - [trim 0, 0] 2017-11-14 09:45:28,007 [DEBUG] contig 24290 to 24897 2017-11-14 09:45:28,007 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,007 [DEBUG] Moving from ref0606503.10e3 to ref0606503.11e5 (p=1) 2017-11-14 09:45:28,008 [DEBUG] unimproved gap 2017-11-14 09:45:28,008 [DEBUG] Moving from ref0606503.11e5 to ref0606503.11e3 (p=1) 2017-11-14 09:45:28,008 [DEBUG] contig 2017-11-14 09:45:28,008 [DEBUG] who? ref0606503.11e5 ref0606503.11e3 2017-11-14 09:45:28,008 [DEBUG] Grabbing contig between nodes ref0606503.11e5 & ref0606503.11e3 - [trim 0, 0] 2017-11-14 09:45:28,008 [DEBUG] contig 25010 to 31092 2017-11-14 09:45:28,008 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,008 [DEBUG] Moving from ref0606503.11e3 to ref0606503.12e5 (p=1) 2017-11-14 09:45:28,008 [DEBUG] unimproved gap 2017-11-14 09:45:28,008 [DEBUG] Moving from ref0606503.12e5 to ref0606503.12e3 (p=1) 2017-11-14 09:45:28,008 [DEBUG] contig 2017-11-14 09:45:28,008 [DEBUG] who? ref0606503.12e5 ref0606503.12e3 2017-11-14 09:45:28,009 [DEBUG] Grabbing contig between nodes ref0606503.12e5 & ref0606503.12e3 - [trim 0, 0] 2017-11-14 09:45:28,009 [DEBUG] contig 31149 to 32189 2017-11-14 09:45:28,009 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,009 [DEBUG] Moving from ref0606503.12e3 to ref0606503.13e5 (p=1) 2017-11-14 09:45:28,009 [DEBUG] unimproved gap 2017-11-14 09:45:28,009 [DEBUG] Moving from ref0606503.13e5 to ref0606503.13e3 (p=1) 2017-11-14 09:45:28,009 [DEBUG] contig 2017-11-14 09:45:28,009 [DEBUG] who? ref0606503.13e5 ref0606503.13e3 2017-11-14 09:45:28,009 [DEBUG] Grabbing contig between nodes ref0606503.13e5 & ref0606503.13e3 - [trim 0, 0] 2017-11-14 09:45:28,009 [DEBUG] contig 32478 to 34148 2017-11-14 09:45:28,009 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,009 [DEBUG] Moving from ref0606503.13e3 to ref0606503.14e5 (p=1) 2017-11-14 09:45:28,009 [DEBUG] unimproved gap 2017-11-14 09:45:28,010 [DEBUG] Moving from ref0606503.14e5 to ref0606503.14e3 (p=1) 2017-11-14 09:45:28,010 [DEBUG] contig 2017-11-14 09:45:28,010 [DEBUG] who? ref0606503.14e5 ref0606503.14e3 2017-11-14 09:45:28,010 [DEBUG] Grabbing contig between nodes ref0606503.14e5 & ref0606503.14e3 - [trim 0, 0] 2017-11-14 09:45:28,010 [DEBUG] contig 34424 to 36221 2017-11-14 09:45:28,010 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,010 [DEBUG] Moving from ref0606503.14e3 to ref0606503.15e5 (p=1) 2017-11-14 09:45:28,010 [DEBUG] unimproved gap 2017-11-14 09:45:28,010 [DEBUG] Moving from ref0606503.15e5 to ref0606503.15e3 (p=1) 2017-11-14 09:45:28,010 [DEBUG] contig 2017-11-14 09:45:28,010 [DEBUG] who? ref0606503.15e5 ref0606503.15e3 2017-11-14 09:45:28,010 [DEBUG] Grabbing contig between nodes ref0606503.15e5 & ref0606503.15e3 - [trim 0, 0] 2017-11-14 09:45:28,010 [DEBUG] contig 36712 to 39680 2017-11-14 09:45:28,011 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,011 [DEBUG] Moving from ref0606503.15e3 to ref0606503.16e5 (p=1) 2017-11-14 09:45:28,011 [DEBUG] unimproved gap 2017-11-14 09:45:28,011 [DEBUG] Moving from ref0606503.16e5 to ref0606503.16e3 (p=1) 2017-11-14 09:45:28,011 [DEBUG] contig 2017-11-14 09:45:28,011 [DEBUG] who? ref0606503.16e5 ref0606503.16e3 2017-11-14 09:45:28,011 [DEBUG] Grabbing contig between nodes ref0606503.16e5 & ref0606503.16e3 - [trim 0, 0] 2017-11-14 09:45:28,011 [DEBUG] contig 39948 to 41221 2017-11-14 09:45:28,011 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,011 [DEBUG] Moving from ref0606503.16e3 to ref0606503.17e5 (p=1) 2017-11-14 09:45:28,011 [DEBUG] unimproved gap 2017-11-14 09:45:28,011 [DEBUG] Moving from ref0606503.17e5 to ref0606503.17e3 (p=1) 2017-11-14 09:45:28,011 [DEBUG] contig 2017-11-14 09:45:28,011 [DEBUG] who? ref0606503.17e5 ref0606503.17e3 2017-11-14 09:45:28,012 [DEBUG] Grabbing contig between nodes ref0606503.17e5 & ref0606503.17e3 - [trim 0, 0] 2017-11-14 09:45:28,012 [DEBUG] contig 41541 to 41575 2017-11-14 09:45:28,012 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,012 [DEBUG] Moving from ref0606503.17e3 to ref0606503.18e5 (p=1) 2017-11-14 09:45:28,012 [DEBUG] unimproved gap 2017-11-14 09:45:28,012 [DEBUG] Moving from ref0606503.18e5 to ref0606503e3 (p=1) 2017-11-14 09:45:28,012 [DEBUG] contig 2017-11-14 09:45:28,012 [DEBUG] who? ref0606503.18e5 ref0606503e3 2017-11-14 09:45:28,012 [DEBUG] Grabbing contig between nodes ref0606503.18e5 & ref0606503e3 - [trim 0, 0] 2017-11-14 09:45:28,012 [DEBUG] contig 41846 to 43508 2017-11-14 09:45:28,012 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,013 [DEBUG] Contig 44 2017-11-14 09:45:28,015 [DEBUG] Moving from ref0729766e5 to ref0729766.0e3 (p=1) 2017-11-14 09:45:28,015 [DEBUG] contig 2017-11-14 09:45:28,015 [DEBUG] who? ref0729766e5 ref0729766.0e3 2017-11-14 09:45:28,015 [DEBUG] Grabbing contig between nodes ref0729766e5 & ref0729766.0e3 - [trim 0, 0] 2017-11-14 09:45:28,015 [DEBUG] contig 0 to 640 2017-11-14 09:45:28,015 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,015 [DEBUG] Moving from ref0729766.0e3 to ref0729766.1e5 (p=1) 2017-11-14 09:45:28,015 [DEBUG] unimproved gap 2017-11-14 09:45:28,015 [DEBUG] Moving from ref0729766.1e5 to ref0729766.1e3 (p=1) 2017-11-14 09:45:28,015 [DEBUG] contig 2017-11-14 09:45:28,015 [DEBUG] who? ref0729766.1e5 ref0729766.1e3 2017-11-14 09:45:28,016 [DEBUG] Grabbing contig between nodes ref0729766.1e5 & ref0729766.1e3 - [trim 0, 0] 2017-11-14 09:45:28,016 [DEBUG] contig 783 to 1261 2017-11-14 09:45:28,016 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,016 [DEBUG] Moving from ref0729766.1e3 to ref0729766.2e5 (p=1) 2017-11-14 09:45:28,016 [DEBUG] unimproved gap 2017-11-14 09:45:28,016 [DEBUG] Moving from ref0729766.2e5 to ref0729766.2e3 (p=1) 2017-11-14 09:45:28,016 [DEBUG] contig 2017-11-14 09:45:28,016 [DEBUG] who? ref0729766.2e5 ref0729766.2e3 2017-11-14 09:45:28,016 [DEBUG] Grabbing contig between nodes ref0729766.2e5 & ref0729766.2e3 - [trim 0, 0] 2017-11-14 09:45:28,016 [DEBUG] contig 1397 to 2643 2017-11-14 09:45:28,016 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,016 [DEBUG] Moving from ref0729766.2e3 to ref0729766.3e5 (p=1) 2017-11-14 09:45:28,016 [DEBUG] unimproved gap 2017-11-14 09:45:28,017 [DEBUG] Moving from ref0729766.3e5 to ref0729766.3e3 (p=1) 2017-11-14 09:45:28,017 [DEBUG] contig 2017-11-14 09:45:28,017 [DEBUG] who? ref0729766.3e5 ref0729766.3e3 2017-11-14 09:45:28,017 [DEBUG] Grabbing contig between nodes ref0729766.3e5 & ref0729766.3e3 - [trim 0, 0] 2017-11-14 09:45:28,017 [DEBUG] contig 2862 to 3468 2017-11-14 09:45:28,017 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,017 [DEBUG] Moving from ref0729766.3e3 to ref0729766.4e5 (p=1) 2017-11-14 09:45:28,017 [DEBUG] unimproved gap 2017-11-14 09:45:28,017 [DEBUG] Moving from ref0729766.4e5 to ref0729766.4e3 (p=1) 2017-11-14 09:45:28,017 [DEBUG] contig 2017-11-14 09:45:28,017 [DEBUG] who? ref0729766.4e5 ref0729766.4e3 2017-11-14 09:45:28,017 [DEBUG] Grabbing contig between nodes ref0729766.4e5 & ref0729766.4e3 - [trim 0, 0] 2017-11-14 09:45:28,017 [DEBUG] contig 3810 to 10174 2017-11-14 09:45:28,018 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,018 [DEBUG] Moving from ref0729766.4e3 to ref0729766.5e5 (p=1) 2017-11-14 09:45:28,018 [DEBUG] unimproved gap 2017-11-14 09:45:28,018 [DEBUG] Moving from ref0729766.5e5 to ref0729766.5e3 (p=1) 2017-11-14 09:45:28,018 [DEBUG] contig 2017-11-14 09:45:28,018 [DEBUG] who? ref0729766.5e5 ref0729766.5e3 2017-11-14 09:45:28,018 [DEBUG] Grabbing contig between nodes ref0729766.5e5 & ref0729766.5e3 - [trim 0, 0] 2017-11-14 09:45:28,018 [DEBUG] contig 10251 to 10332 2017-11-14 09:45:28,018 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,018 [DEBUG] Moving from ref0729766.5e3 to ref0729766.6e5 (p=1) 2017-11-14 09:45:28,018 [DEBUG] unimproved gap 2017-11-14 09:45:28,018 [DEBUG] Moving from ref0729766.6e5 to ref0729766.6e3 (p=1) 2017-11-14 09:45:28,018 [DEBUG] contig 2017-11-14 09:45:28,019 [DEBUG] who? ref0729766.6e5 ref0729766.6e3 2017-11-14 09:45:28,019 [DEBUG] Grabbing contig between nodes ref0729766.6e5 & ref0729766.6e3 - [trim 0, 0] 2017-11-14 09:45:28,019 [DEBUG] contig 10420 to 10572 2017-11-14 09:45:28,019 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,019 [DEBUG] Moving from ref0729766.6e3 to ref0729766.7e5 (p=1) 2017-11-14 09:45:28,019 [DEBUG] unimproved gap 2017-11-14 09:45:28,019 [DEBUG] Moving from ref0729766.7e5 to ref0729766.7e3 (p=1) 2017-11-14 09:45:28,019 [DEBUG] contig 2017-11-14 09:45:28,019 [DEBUG] who? ref0729766.7e5 ref0729766.7e3 2017-11-14 09:45:28,019 [DEBUG] Grabbing contig between nodes ref0729766.7e5 & ref0729766.7e3 - [trim 0, 0] 2017-11-14 09:45:28,019 [DEBUG] contig 10741 to 12618 2017-11-14 09:45:28,019 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,019 [DEBUG] Moving from ref0729766.7e3 to ref0729766.8e5 (p=1) 2017-11-14 09:45:28,019 [DEBUG] unimproved gap 2017-11-14 09:45:28,020 [DEBUG] Moving from ref0729766.8e5 to ref0729766.8e3 (p=1) 2017-11-14 09:45:28,020 [DEBUG] contig 2017-11-14 09:45:28,020 [DEBUG] who? ref0729766.8e5 ref0729766.8e3 2017-11-14 09:45:28,020 [DEBUG] Grabbing contig between nodes ref0729766.8e5 & ref0729766.8e3 - [trim 0, 0] 2017-11-14 09:45:28,020 [DEBUG] contig 12689 to 14513 2017-11-14 09:45:28,020 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,020 [DEBUG] Moving from ref0729766.8e3 to ref0729766.9e5 (p=1) 2017-11-14 09:45:28,020 [DEBUG] unimproved gap 2017-11-14 09:45:28,020 [DEBUG] Moving from ref0729766.9e5 to ref0729766.9e3 (p=1) 2017-11-14 09:45:28,020 [DEBUG] contig 2017-11-14 09:45:28,020 [DEBUG] who? ref0729766.9e5 ref0729766.9e3 2017-11-14 09:45:28,020 [DEBUG] Grabbing contig between nodes ref0729766.9e5 & ref0729766.9e3 - [trim 0, 0] 2017-11-14 09:45:28,020 [DEBUG] contig 14700 to 15046 2017-11-14 09:45:28,021 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,021 [DEBUG] Moving from ref0729766.9e3 to ref0729766.10e5 (p=1) 2017-11-14 09:45:28,021 [DEBUG] unimproved gap 2017-11-14 09:45:28,021 [DEBUG] Moving from ref0729766.10e5 to ref0729766.10e3 (p=1) 2017-11-14 09:45:28,021 [DEBUG] contig 2017-11-14 09:45:28,021 [DEBUG] who? ref0729766.10e5 ref0729766.10e3 2017-11-14 09:45:28,021 [DEBUG] Grabbing contig between nodes ref0729766.10e5 & ref0729766.10e3 - [trim 0, 0] 2017-11-14 09:45:28,021 [DEBUG] contig 15237 to 15892 2017-11-14 09:45:28,021 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,021 [DEBUG] Moving from ref0729766.10e3 to ref0729766.11e5 (p=1) 2017-11-14 09:45:28,021 [DEBUG] unimproved gap 2017-11-14 09:45:28,021 [DEBUG] Moving from ref0729766.11e5 to ref0729766.11e3 (p=1) 2017-11-14 09:45:28,021 [DEBUG] contig 2017-11-14 09:45:28,022 [DEBUG] who? ref0729766.11e5 ref0729766.11e3 2017-11-14 09:45:28,022 [DEBUG] Grabbing contig between nodes ref0729766.11e5 & ref0729766.11e3 - [trim 0, 0] 2017-11-14 09:45:28,022 [DEBUG] contig 15945 to 16008 2017-11-14 09:45:28,022 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,022 [DEBUG] Moving from ref0729766.11e3 to ref0729766.12e5 (p=1) 2017-11-14 09:45:28,022 [DEBUG] unimproved gap 2017-11-14 09:45:28,022 [DEBUG] Moving from ref0729766.12e5 to ref0729766.12e3 (p=1) 2017-11-14 09:45:28,022 [DEBUG] contig 2017-11-14 09:45:28,022 [DEBUG] who? ref0729766.12e5 ref0729766.12e3 2017-11-14 09:45:28,022 [DEBUG] Grabbing contig between nodes ref0729766.12e5 & ref0729766.12e3 - [trim 0, 0] 2017-11-14 09:45:28,022 [DEBUG] contig 16081 to 16293 2017-11-14 09:45:28,022 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,022 [DEBUG] Moving from ref0729766.12e3 to ref0729766.13e5 (p=1) 2017-11-14 09:45:28,022 [DEBUG] unimproved gap 2017-11-14 09:45:28,023 [DEBUG] Moving from ref0729766.13e5 to ref0729766.13e3 (p=1) 2017-11-14 09:45:28,023 [DEBUG] contig 2017-11-14 09:45:28,023 [DEBUG] who? ref0729766.13e5 ref0729766.13e3 2017-11-14 09:45:28,023 [DEBUG] Grabbing contig between nodes ref0729766.13e5 & ref0729766.13e3 - [trim 0, 0] 2017-11-14 09:45:28,023 [DEBUG] contig 16387 to 23600 2017-11-14 09:45:28,023 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,023 [DEBUG] Moving from ref0729766.13e3 to ref0729766.14e5 (p=1) 2017-11-14 09:45:28,023 [DEBUG] unimproved gap 2017-11-14 09:45:28,023 [DEBUG] Moving from ref0729766.14e5 to ref0729766.14e3 (p=1) 2017-11-14 09:45:28,023 [DEBUG] contig 2017-11-14 09:45:28,023 [DEBUG] who? ref0729766.14e5 ref0729766.14e3 2017-11-14 09:45:28,023 [DEBUG] Grabbing contig between nodes ref0729766.14e5 & ref0729766.14e3 - [trim 0, 0] 2017-11-14 09:45:28,023 [DEBUG] contig 23791 to 23879 2017-11-14 09:45:28,024 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,024 [DEBUG] Moving from ref0729766.14e3 to ref0729766.15e5 (p=1) 2017-11-14 09:45:28,024 [DEBUG] unimproved gap 2017-11-14 09:45:28,024 [DEBUG] Moving from ref0729766.15e5 to ref0729766.15e3 (p=1) 2017-11-14 09:45:28,024 [DEBUG] contig 2017-11-14 09:45:28,024 [DEBUG] who? ref0729766.15e5 ref0729766.15e3 2017-11-14 09:45:28,024 [DEBUG] Grabbing contig between nodes ref0729766.15e5 & ref0729766.15e3 - [trim 0, 0] 2017-11-14 09:45:28,024 [DEBUG] contig 23975 to 24205 2017-11-14 09:45:28,024 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,024 [DEBUG] Moving from ref0729766.15e3 to ref0729766.16e5 (p=1) 2017-11-14 09:45:28,024 [DEBUG] unimproved gap 2017-11-14 09:45:28,024 [DEBUG] Moving from ref0729766.16e5 to ref0729766.16e3 (p=1) 2017-11-14 09:45:28,024 [DEBUG] contig 2017-11-14 09:45:28,025 [DEBUG] who? ref0729766.16e5 ref0729766.16e3 2017-11-14 09:45:28,025 [DEBUG] Grabbing contig between nodes ref0729766.16e5 & ref0729766.16e3 - [trim 0, 0] 2017-11-14 09:45:28,025 [DEBUG] contig 24436 to 24635 2017-11-14 09:45:28,025 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,025 [DEBUG] Moving from ref0729766.16e3 to ref0729766.17e5 (p=1) 2017-11-14 09:45:28,025 [DEBUG] unimproved gap 2017-11-14 09:45:28,025 [DEBUG] Moving from ref0729766.17e5 to ref0729766.17e3 (p=1) 2017-11-14 09:45:28,025 [DEBUG] contig 2017-11-14 09:45:28,025 [DEBUG] who? ref0729766.17e5 ref0729766.17e3 2017-11-14 09:45:28,025 [DEBUG] Grabbing contig between nodes ref0729766.17e5 & ref0729766.17e3 - [trim 0, 0] 2017-11-14 09:45:28,025 [DEBUG] contig 24769 to 25235 2017-11-14 09:45:28,025 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,026 [DEBUG] Moving from ref0729766.17e3 to ref0729766.18e5 (p=1) 2017-11-14 09:45:28,026 [DEBUG] unimproved gap 2017-11-14 09:45:28,026 [DEBUG] Moving from ref0729766.18e5 to ref0729766e3 (p=1) 2017-11-14 09:45:28,026 [DEBUG] contig 2017-11-14 09:45:28,026 [DEBUG] who? ref0729766.18e5 ref0729766e3 2017-11-14 09:45:28,026 [DEBUG] Grabbing contig between nodes ref0729766.18e5 & ref0729766e3 - [trim 0, 0] 2017-11-14 09:45:28,026 [DEBUG] contig 25284 to 25955 2017-11-14 09:45:28,026 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,026 [DEBUG] Contig 45 2017-11-14 09:45:28,028 [DEBUG] Moving from ref0478526e5 to ref0478526.0e3 (p=1) 2017-11-14 09:45:28,028 [DEBUG] contig 2017-11-14 09:45:28,029 [DEBUG] who? ref0478526e5 ref0478526.0e3 2017-11-14 09:45:28,029 [DEBUG] Grabbing contig between nodes ref0478526e5 & ref0478526.0e3 - [trim 0, 0] 2017-11-14 09:45:28,029 [DEBUG] contig 0 to 885 2017-11-14 09:45:28,029 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,029 [DEBUG] Moving from ref0478526.0e3 to ref0478526.1e5 (p=1) 2017-11-14 09:45:28,029 [DEBUG] unimproved gap 2017-11-14 09:45:28,029 [DEBUG] Moving from ref0478526.1e5 to ref0478526.1e3 (p=1) 2017-11-14 09:45:28,029 [DEBUG] contig 2017-11-14 09:45:28,029 [DEBUG] who? ref0478526.1e5 ref0478526.1e3 2017-11-14 09:45:28,029 [DEBUG] Grabbing contig between nodes ref0478526.1e5 & ref0478526.1e3 - [trim 0, 0] 2017-11-14 09:45:28,029 [DEBUG] contig 925 to 1980 2017-11-14 09:45:28,029 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,029 [DEBUG] Moving from ref0478526.1e3 to ref0478526.2e5 (p=1) 2017-11-14 09:45:28,029 [DEBUG] unimproved gap 2017-11-14 09:45:28,030 [DEBUG] Moving from ref0478526.2e5 to ref0478526.2e3 (p=1) 2017-11-14 09:45:28,030 [DEBUG] contig 2017-11-14 09:45:28,030 [DEBUG] who? ref0478526.2e5 ref0478526.2e3 2017-11-14 09:45:28,030 [DEBUG] Grabbing contig between nodes ref0478526.2e5 & ref0478526.2e3 - [trim 0, 0] 2017-11-14 09:45:28,030 [DEBUG] contig 2423 to 5934 2017-11-14 09:45:28,030 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,030 [DEBUG] Moving from ref0478526.2e3 to ref0478526.3e5 (p=1) 2017-11-14 09:45:28,030 [DEBUG] unimproved gap 2017-11-14 09:45:28,030 [DEBUG] Moving from ref0478526.3e5 to ref0478526.3e3 (p=1) 2017-11-14 09:45:28,030 [DEBUG] contig 2017-11-14 09:45:28,030 [DEBUG] who? ref0478526.3e5 ref0478526.3e3 2017-11-14 09:45:28,030 [DEBUG] Grabbing contig between nodes ref0478526.3e5 & ref0478526.3e3 - [trim 0, 0] 2017-11-14 09:45:28,030 [DEBUG] contig 6247 to 7181 2017-11-14 09:45:28,031 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,031 [DEBUG] Moving from ref0478526.3e3 to ref0478526.4e5 (p=1) 2017-11-14 09:45:28,031 [DEBUG] unimproved gap 2017-11-14 09:45:28,031 [DEBUG] Moving from ref0478526.4e5 to ref0478526.4e3 (p=1) 2017-11-14 09:45:28,031 [DEBUG] contig 2017-11-14 09:45:28,031 [DEBUG] who? ref0478526.4e5 ref0478526.4e3 2017-11-14 09:45:28,031 [DEBUG] Grabbing contig between nodes ref0478526.4e5 & ref0478526.4e3 - [trim 0, 0] 2017-11-14 09:45:28,031 [DEBUG] contig 7255 to 8881 2017-11-14 09:45:28,031 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,031 [DEBUG] Moving from ref0478526.4e3 to ref0478526.5e5 (p=1) 2017-11-14 09:45:28,031 [DEBUG] unimproved gap 2017-11-14 09:45:28,031 [DEBUG] Moving from ref0478526.5e5 to ref0478526.5e3 (p=1) 2017-11-14 09:45:28,031 [DEBUG] contig 2017-11-14 09:45:28,032 [DEBUG] who? ref0478526.5e5 ref0478526.5e3 2017-11-14 09:45:28,032 [DEBUG] Grabbing contig between nodes ref0478526.5e5 & ref0478526.5e3 - [trim 0, 0] 2017-11-14 09:45:28,032 [DEBUG] contig 8915 to 9017 2017-11-14 09:45:28,032 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,032 [DEBUG] Moving from ref0478526.5e3 to ref0478526.6e5 (p=1) 2017-11-14 09:45:28,032 [DEBUG] unimproved gap 2017-11-14 09:45:28,032 [DEBUG] Moving from ref0478526.6e5 to ref0478526.6e3 (p=1) 2017-11-14 09:45:28,032 [DEBUG] contig 2017-11-14 09:45:28,032 [DEBUG] who? ref0478526.6e5 ref0478526.6e3 2017-11-14 09:45:28,032 [DEBUG] Grabbing contig between nodes ref0478526.6e5 & ref0478526.6e3 - [trim 0, 0] 2017-11-14 09:45:28,032 [DEBUG] contig 9259 to 9399 2017-11-14 09:45:28,032 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,032 [DEBUG] Moving from ref0478526.6e3 to ref0478526.7e5 (p=1) 2017-11-14 09:45:28,033 [DEBUG] unimproved gap 2017-11-14 09:45:28,033 [DEBUG] Moving from ref0478526.7e5 to ref0478526.7e3 (p=1) 2017-11-14 09:45:28,033 [DEBUG] contig 2017-11-14 09:45:28,033 [DEBUG] who? ref0478526.7e5 ref0478526.7e3 2017-11-14 09:45:28,033 [DEBUG] Grabbing contig between nodes ref0478526.7e5 & ref0478526.7e3 - [trim 0, 0] 2017-11-14 09:45:28,033 [DEBUG] contig 9445 to 9494 2017-11-14 09:45:28,033 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,033 [DEBUG] Moving from ref0478526.7e3 to ref0478526.8e5 (p=1) 2017-11-14 09:45:28,033 [DEBUG] unimproved gap 2017-11-14 09:45:28,033 [DEBUG] Moving from ref0478526.8e5 to ref0478526.8e3 (p=1) 2017-11-14 09:45:28,033 [DEBUG] contig 2017-11-14 09:45:28,033 [DEBUG] who? ref0478526.8e5 ref0478526.8e3 2017-11-14 09:45:28,033 [DEBUG] Grabbing contig between nodes ref0478526.8e5 & ref0478526.8e3 - [trim 0, 0] 2017-11-14 09:45:28,034 [DEBUG] contig 9536 to 9593 2017-11-14 09:45:28,034 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,034 [DEBUG] Moving from ref0478526.8e3 to ref0478526.9e5 (p=1) 2017-11-14 09:45:28,034 [DEBUG] unimproved gap 2017-11-14 09:45:28,034 [DEBUG] Moving from ref0478526.9e5 to ref0478526.9e3 (p=1) 2017-11-14 09:45:28,034 [DEBUG] contig 2017-11-14 09:45:28,034 [DEBUG] who? ref0478526.9e5 ref0478526.9e3 2017-11-14 09:45:28,034 [DEBUG] Grabbing contig between nodes ref0478526.9e5 & ref0478526.9e3 - [trim 0, 0] 2017-11-14 09:45:28,034 [DEBUG] contig 9692 to 10597 2017-11-14 09:45:28,034 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,034 [DEBUG] Moving from ref0478526.9e3 to ref0478526.10e5 (p=1) 2017-11-14 09:45:28,034 [DEBUG] unimproved gap 2017-11-14 09:45:28,034 [DEBUG] Moving from ref0478526.10e5 to ref0478526.10e3 (p=1) 2017-11-14 09:45:28,034 [DEBUG] contig 2017-11-14 09:45:28,035 [DEBUG] who? ref0478526.10e5 ref0478526.10e3 2017-11-14 09:45:28,035 [DEBUG] Grabbing contig between nodes ref0478526.10e5 & ref0478526.10e3 - [trim 0, 0] 2017-11-14 09:45:28,035 [DEBUG] contig 10638 to 10711 2017-11-14 09:45:28,035 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,035 [DEBUG] Moving from ref0478526.10e3 to ref0478526.11e5 (p=1) 2017-11-14 09:45:28,035 [DEBUG] unimproved gap 2017-11-14 09:45:28,035 [DEBUG] Moving from ref0478526.11e5 to ref0478526.11e3 (p=1) 2017-11-14 09:45:28,035 [DEBUG] contig 2017-11-14 09:45:28,035 [DEBUG] who? ref0478526.11e5 ref0478526.11e3 2017-11-14 09:45:28,035 [DEBUG] Grabbing contig between nodes ref0478526.11e5 & ref0478526.11e3 - [trim 0, 0] 2017-11-14 09:45:28,035 [DEBUG] contig 10745 to 10812 2017-11-14 09:45:28,035 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,035 [DEBUG] Moving from ref0478526.11e3 to ref0478526.12e5 (p=1) 2017-11-14 09:45:28,035 [DEBUG] unimproved gap 2017-11-14 09:45:28,036 [DEBUG] Moving from ref0478526.12e5 to ref0478526.12e3 (p=1) 2017-11-14 09:45:28,036 [DEBUG] contig 2017-11-14 09:45:28,036 [DEBUG] who? ref0478526.12e5 ref0478526.12e3 2017-11-14 09:45:28,036 [DEBUG] Grabbing contig between nodes ref0478526.12e5 & ref0478526.12e3 - [trim 0, 0] 2017-11-14 09:45:28,036 [DEBUG] contig 10884 to 10954 2017-11-14 09:45:28,036 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,036 [DEBUG] Moving from ref0478526.12e3 to ref0478526.13e5 (p=1) 2017-11-14 09:45:28,036 [DEBUG] unimproved gap 2017-11-14 09:45:28,036 [DEBUG] Moving from ref0478526.13e5 to ref0478526.13e3 (p=1) 2017-11-14 09:45:28,036 [DEBUG] contig 2017-11-14 09:45:28,036 [DEBUG] who? ref0478526.13e5 ref0478526.13e3 2017-11-14 09:45:28,036 [DEBUG] Grabbing contig between nodes ref0478526.13e5 & ref0478526.13e3 - [trim 0, 0] 2017-11-14 09:45:28,036 [DEBUG] contig 11019 to 11318 2017-11-14 09:45:28,037 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,037 [DEBUG] Moving from ref0478526.13e3 to ref0478526.14e5 (p=1) 2017-11-14 09:45:28,037 [DEBUG] unimproved gap 2017-11-14 09:45:28,037 [DEBUG] Moving from ref0478526.14e5 to ref0478526.14e3 (p=1) 2017-11-14 09:45:28,037 [DEBUG] contig 2017-11-14 09:45:28,037 [DEBUG] who? ref0478526.14e5 ref0478526.14e3 2017-11-14 09:45:28,037 [DEBUG] Grabbing contig between nodes ref0478526.14e5 & ref0478526.14e3 - [trim 0, 0] 2017-11-14 09:45:28,037 [DEBUG] contig 11384 to 13570 2017-11-14 09:45:28,037 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,037 [DEBUG] Moving from ref0478526.14e3 to ref0478526.15e5 (p=1) 2017-11-14 09:45:28,037 [DEBUG] unimproved gap 2017-11-14 09:45:28,037 [DEBUG] Moving from ref0478526.15e5 to ref0478526.15e3 (p=1) 2017-11-14 09:45:28,037 [DEBUG] contig 2017-11-14 09:45:28,038 [DEBUG] who? ref0478526.15e5 ref0478526.15e3 2017-11-14 09:45:28,038 [DEBUG] Grabbing contig between nodes ref0478526.15e5 & ref0478526.15e3 - [trim 0, 0] 2017-11-14 09:45:28,038 [DEBUG] contig 13614 to 18424 2017-11-14 09:45:28,038 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,038 [DEBUG] Moving from ref0478526.15e3 to ref0478526.16e5 (p=1) 2017-11-14 09:45:28,038 [DEBUG] unimproved gap 2017-11-14 09:45:28,038 [DEBUG] Moving from ref0478526.16e5 to ref0478526.16e3 (p=1) 2017-11-14 09:45:28,038 [DEBUG] contig 2017-11-14 09:45:28,038 [DEBUG] who? ref0478526.16e5 ref0478526.16e3 2017-11-14 09:45:28,038 [DEBUG] Grabbing contig between nodes ref0478526.16e5 & ref0478526.16e3 - [trim 0, 0] 2017-11-14 09:45:28,038 [DEBUG] contig 18490 to 24637 2017-11-14 09:45:28,038 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,038 [DEBUG] Moving from ref0478526.16e3 to ref0478526.17e5 (p=1) 2017-11-14 09:45:28,039 [DEBUG] unimproved gap 2017-11-14 09:45:28,039 [DEBUG] Moving from ref0478526.17e5 to ref0478526.17e3 (p=1) 2017-11-14 09:45:28,039 [DEBUG] contig 2017-11-14 09:45:28,039 [DEBUG] who? ref0478526.17e5 ref0478526.17e3 2017-11-14 09:45:28,039 [DEBUG] Grabbing contig between nodes ref0478526.17e5 & ref0478526.17e3 - [trim 0, 0] 2017-11-14 09:45:28,039 [DEBUG] contig 24803 to 24862 2017-11-14 09:45:28,039 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,039 [DEBUG] Moving from ref0478526.17e3 to ref0478526.18e5 (p=1) 2017-11-14 09:45:28,039 [DEBUG] unimproved gap 2017-11-14 09:45:28,039 [DEBUG] Moving from ref0478526.18e5 to ref0478526e3 (p=1) 2017-11-14 09:45:28,039 [DEBUG] contig 2017-11-14 09:45:28,039 [DEBUG] who? ref0478526.18e5 ref0478526e3 2017-11-14 09:45:28,039 [DEBUG] Grabbing contig between nodes ref0478526.18e5 & ref0478526e3 - [trim 0, 0] 2017-11-14 09:45:28,040 [DEBUG] contig 24959 to 25734 2017-11-14 09:45:28,040 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,040 [DEBUG] Contig 46 2017-11-14 09:45:28,042 [DEBUG] Moving from ref0574658e3 to ref0574658.18e5 (p=1) 2017-11-14 09:45:28,042 [DEBUG] contig 2017-11-14 09:45:28,042 [DEBUG] who? ref0574658.18e5 ref0574658e3 2017-11-14 09:45:28,042 [DEBUG] Grabbing contig between nodes ref0574658.18e5 & ref0574658e3 - [trim 0, 0] 2017-11-14 09:45:28,042 [DEBUG] contig 31873 to 31911 2017-11-14 09:45:28,042 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,042 [DEBUG] Moving from ref0574658.18e5 to ref0574658.17e3 (p=1) 2017-11-14 09:45:28,042 [DEBUG] unimproved gap 2017-11-14 09:45:28,043 [DEBUG] Moving from ref0574658.17e3 to ref0574658.17e5 (p=1) 2017-11-14 09:45:28,043 [DEBUG] contig 2017-11-14 09:45:28,043 [DEBUG] who? ref0574658.17e5 ref0574658.17e3 2017-11-14 09:45:28,043 [DEBUG] Grabbing contig between nodes ref0574658.17e5 & ref0574658.17e3 - [trim 0, 0] 2017-11-14 09:45:28,043 [DEBUG] contig 31654 to 31698 2017-11-14 09:45:28,043 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,043 [DEBUG] Moving from ref0574658.17e5 to ref0574658.16e3 (p=1) 2017-11-14 09:45:28,043 [DEBUG] unimproved gap 2017-11-14 09:45:28,043 [DEBUG] Moving from ref0574658.16e3 to ref0574658.16e5 (p=1) 2017-11-14 09:45:28,043 [DEBUG] contig 2017-11-14 09:45:28,043 [DEBUG] who? ref0574658.16e5 ref0574658.16e3 2017-11-14 09:45:28,043 [DEBUG] Grabbing contig between nodes ref0574658.16e5 & ref0574658.16e3 - [trim 0, 0] 2017-11-14 09:45:28,043 [DEBUG] contig 30262 to 31291 2017-11-14 09:45:28,044 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,044 [DEBUG] Moving from ref0574658.16e5 to ref0574658.15e3 (p=1) 2017-11-14 09:45:28,044 [DEBUG] unimproved gap 2017-11-14 09:45:28,044 [DEBUG] Moving from ref0574658.15e3 to ref0574658.15e5 (p=1) 2017-11-14 09:45:28,044 [DEBUG] contig 2017-11-14 09:45:28,044 [DEBUG] who? ref0574658.15e5 ref0574658.15e3 2017-11-14 09:45:28,044 [DEBUG] Grabbing contig between nodes ref0574658.15e5 & ref0574658.15e3 - [trim 0, 0] 2017-11-14 09:45:28,044 [DEBUG] contig 30157 to 30212 2017-11-14 09:45:28,044 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,044 [DEBUG] Moving from ref0574658.15e5 to ref0574658.14e3 (p=1) 2017-11-14 09:45:28,044 [DEBUG] unimproved gap 2017-11-14 09:45:28,044 [DEBUG] Moving from ref0574658.14e3 to ref0574658.14e5 (p=1) 2017-11-14 09:45:28,044 [DEBUG] contig 2017-11-14 09:45:28,045 [DEBUG] who? ref0574658.14e5 ref0574658.14e3 2017-11-14 09:45:28,045 [DEBUG] Grabbing contig between nodes ref0574658.14e5 & ref0574658.14e3 - [trim 0, 0] 2017-11-14 09:45:28,045 [DEBUG] contig 25406 to 30116 2017-11-14 09:45:28,045 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,045 [DEBUG] Moving from ref0574658.14e5 to ref0574658.13e3 (p=1) 2017-11-14 09:45:28,045 [DEBUG] unimproved gap 2017-11-14 09:45:28,045 [DEBUG] Moving from ref0574658.13e3 to ref0574658.13e5 (p=1) 2017-11-14 09:45:28,045 [DEBUG] contig 2017-11-14 09:45:28,045 [DEBUG] who? ref0574658.13e5 ref0574658.13e3 2017-11-14 09:45:28,045 [DEBUG] Grabbing contig between nodes ref0574658.13e5 & ref0574658.13e3 - [trim 0, 0] 2017-11-14 09:45:28,045 [DEBUG] contig 24466 to 25254 2017-11-14 09:45:28,045 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,045 [DEBUG] Moving from ref0574658.13e5 to ref0574658.12e3 (p=1) 2017-11-14 09:45:28,046 [DEBUG] unimproved gap 2017-11-14 09:45:28,046 [DEBUG] Moving from ref0574658.12e3 to ref0574658.12e5 (p=1) 2017-11-14 09:45:28,046 [DEBUG] contig 2017-11-14 09:45:28,046 [DEBUG] who? ref0574658.12e5 ref0574658.12e3 2017-11-14 09:45:28,046 [DEBUG] Grabbing contig between nodes ref0574658.12e5 & ref0574658.12e3 - [trim 0, 0] 2017-11-14 09:45:28,046 [DEBUG] contig 23688 to 24160 2017-11-14 09:45:28,046 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,046 [DEBUG] Moving from ref0574658.12e5 to ref0574658.11e3 (p=1) 2017-11-14 09:45:28,046 [DEBUG] unimproved gap 2017-11-14 09:45:28,046 [DEBUG] Moving from ref0574658.11e3 to ref0574658.11e5 (p=1) 2017-11-14 09:45:28,046 [DEBUG] contig 2017-11-14 09:45:28,046 [DEBUG] who? ref0574658.11e5 ref0574658.11e3 2017-11-14 09:45:28,046 [DEBUG] Grabbing contig between nodes ref0574658.11e5 & ref0574658.11e3 - [trim 0, 0] 2017-11-14 09:45:28,047 [DEBUG] contig 18452 to 23580 2017-11-14 09:45:28,047 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,047 [DEBUG] Moving from ref0574658.11e5 to ref0574658.10e3 (p=1) 2017-11-14 09:45:28,047 [DEBUG] unimproved gap 2017-11-14 09:45:28,047 [DEBUG] Moving from ref0574658.10e3 to ref0574658.10e5 (p=1) 2017-11-14 09:45:28,047 [DEBUG] contig 2017-11-14 09:45:28,047 [DEBUG] who? ref0574658.10e5 ref0574658.10e3 2017-11-14 09:45:28,047 [DEBUG] Grabbing contig between nodes ref0574658.10e5 & ref0574658.10e3 - [trim 0, 0] 2017-11-14 09:45:28,047 [DEBUG] contig 17666 to 18409 2017-11-14 09:45:28,047 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,047 [DEBUG] Moving from ref0574658.10e5 to ref0574658.9e3 (p=1) 2017-11-14 09:45:28,047 [DEBUG] unimproved gap 2017-11-14 09:45:28,047 [DEBUG] Moving from ref0574658.9e3 to ref0574658.9e5 (p=1) 2017-11-14 09:45:28,047 [DEBUG] contig 2017-11-14 09:45:28,048 [DEBUG] who? ref0574658.9e5 ref0574658.9e3 2017-11-14 09:45:28,048 [DEBUG] Grabbing contig between nodes ref0574658.9e5 & ref0574658.9e3 - [trim 0, 0] 2017-11-14 09:45:28,048 [DEBUG] contig 16933 to 17166 2017-11-14 09:45:28,048 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,048 [DEBUG] Moving from ref0574658.9e5 to ref0574658.8e3 (p=1) 2017-11-14 09:45:28,048 [DEBUG] unimproved gap 2017-11-14 09:45:28,048 [DEBUG] Moving from ref0574658.8e3 to ref0574658.8e5 (p=1) 2017-11-14 09:45:28,048 [DEBUG] contig 2017-11-14 09:45:28,048 [DEBUG] who? ref0574658.8e5 ref0574658.8e3 2017-11-14 09:45:28,048 [DEBUG] Grabbing contig between nodes ref0574658.8e5 & ref0574658.8e3 - [trim 0, 0] 2017-11-14 09:45:28,048 [DEBUG] contig 13552 to 16678 2017-11-14 09:45:28,048 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,048 [DEBUG] Moving from ref0574658.8e5 to ref0574658.7e3 (p=1) 2017-11-14 09:45:28,049 [DEBUG] unimproved gap 2017-11-14 09:45:28,049 [DEBUG] Moving from ref0574658.7e3 to ref0574658.7e5 (p=1) 2017-11-14 09:45:28,049 [DEBUG] contig 2017-11-14 09:45:28,049 [DEBUG] who? ref0574658.7e5 ref0574658.7e3 2017-11-14 09:45:28,049 [DEBUG] Grabbing contig between nodes ref0574658.7e5 & ref0574658.7e3 - [trim 0, 0] 2017-11-14 09:45:28,049 [DEBUG] contig 7004 to 13485 2017-11-14 09:45:28,049 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,049 [DEBUG] Moving from ref0574658.7e5 to ref0574658.6e3 (p=1) 2017-11-14 09:45:28,049 [DEBUG] unimproved gap 2017-11-14 09:45:28,049 [DEBUG] Moving from ref0574658.6e3 to ref0574658.6e5 (p=1) 2017-11-14 09:45:28,049 [DEBUG] contig 2017-11-14 09:45:28,049 [DEBUG] who? ref0574658.6e5 ref0574658.6e3 2017-11-14 09:45:28,049 [DEBUG] Grabbing contig between nodes ref0574658.6e5 & ref0574658.6e3 - [trim 0, 0] 2017-11-14 09:45:28,050 [DEBUG] contig 6845 to 6945 2017-11-14 09:45:28,050 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,050 [DEBUG] Moving from ref0574658.6e5 to ref0574658.5e3 (p=1) 2017-11-14 09:45:28,050 [DEBUG] unimproved gap 2017-11-14 09:45:28,050 [DEBUG] Moving from ref0574658.5e3 to ref0574658.5e5 (p=1) 2017-11-14 09:45:28,050 [DEBUG] contig 2017-11-14 09:45:28,050 [DEBUG] who? ref0574658.5e5 ref0574658.5e3 2017-11-14 09:45:28,050 [DEBUG] Grabbing contig between nodes ref0574658.5e5 & ref0574658.5e3 - [trim 0, 0] 2017-11-14 09:45:28,050 [DEBUG] contig 6438 to 6757 2017-11-14 09:45:28,050 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,050 [DEBUG] Moving from ref0574658.5e5 to ref0574658.4e3 (p=1) 2017-11-14 09:45:28,050 [DEBUG] unimproved gap 2017-11-14 09:45:28,050 [DEBUG] Moving from ref0574658.4e3 to ref0574658.4e5 (p=1) 2017-11-14 09:45:28,050 [DEBUG] contig 2017-11-14 09:45:28,051 [DEBUG] who? ref0574658.4e5 ref0574658.4e3 2017-11-14 09:45:28,051 [DEBUG] Grabbing contig between nodes ref0574658.4e5 & ref0574658.4e3 - [trim 0, 0] 2017-11-14 09:45:28,051 [DEBUG] contig 5736 to 6329 2017-11-14 09:45:28,051 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,051 [DEBUG] Moving from ref0574658.4e5 to ref0574658.3e3 (p=1) 2017-11-14 09:45:28,051 [DEBUG] unimproved gap 2017-11-14 09:45:28,051 [DEBUG] Moving from ref0574658.3e3 to ref0574658.3e5 (p=1) 2017-11-14 09:45:28,051 [DEBUG] contig 2017-11-14 09:45:28,051 [DEBUG] who? ref0574658.3e5 ref0574658.3e3 2017-11-14 09:45:28,051 [DEBUG] Grabbing contig between nodes ref0574658.3e5 & ref0574658.3e3 - [trim 0, 0] 2017-11-14 09:45:28,051 [DEBUG] contig 5578 to 5611 2017-11-14 09:45:28,051 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,051 [DEBUG] Moving from ref0574658.3e5 to ref0574658.2e3 (p=1) 2017-11-14 09:45:28,052 [DEBUG] unimproved gap 2017-11-14 09:45:28,052 [DEBUG] Moving from ref0574658.2e3 to ref0574658.2e5 (p=1) 2017-11-14 09:45:28,052 [DEBUG] contig 2017-11-14 09:45:28,052 [DEBUG] who? ref0574658.2e5 ref0574658.2e3 2017-11-14 09:45:28,052 [DEBUG] Grabbing contig between nodes ref0574658.2e5 & ref0574658.2e3 - [trim 0, 0] 2017-11-14 09:45:28,052 [DEBUG] contig 5262 to 5304 2017-11-14 09:45:28,052 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,052 [DEBUG] Moving from ref0574658.2e5 to ref0574658.1e3 (p=1) 2017-11-14 09:45:28,052 [DEBUG] unimproved gap 2017-11-14 09:45:28,052 [DEBUG] Moving from ref0574658.1e3 to ref0574658.1e5 (p=1) 2017-11-14 09:45:28,052 [DEBUG] contig 2017-11-14 09:45:28,052 [DEBUG] who? ref0574658.1e5 ref0574658.1e3 2017-11-14 09:45:28,052 [DEBUG] Grabbing contig between nodes ref0574658.1e5 & ref0574658.1e3 - [trim 0, 0] 2017-11-14 09:45:28,053 [DEBUG] contig 4377 to 5036 2017-11-14 09:45:28,053 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,053 [DEBUG] Moving from ref0574658.1e5 to ref0574658.0e3 (p=1) 2017-11-14 09:45:28,053 [DEBUG] unimproved gap 2017-11-14 09:45:28,053 [DEBUG] Moving from ref0574658.0e3 to ref0574658e5 (p=1) 2017-11-14 09:45:28,053 [DEBUG] contig 2017-11-14 09:45:28,053 [DEBUG] who? ref0574658e5 ref0574658.0e3 2017-11-14 09:45:28,053 [DEBUG] Grabbing contig between nodes ref0574658e5 & ref0574658.0e3 - [trim 0, 0] 2017-11-14 09:45:28,053 [DEBUG] contig 0 to 4215 2017-11-14 09:45:28,053 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,053 [DEBUG] FirstFlipping 46 2017-11-14 09:45:28,054 [DEBUG] Contig 47 2017-11-14 09:45:28,056 [DEBUG] Moving from ref0538143e5 to ref0538143.0e3 (p=1) 2017-11-14 09:45:28,056 [DEBUG] contig 2017-11-14 09:45:28,056 [DEBUG] who? ref0538143e5 ref0538143.0e3 2017-11-14 09:45:28,056 [DEBUG] Grabbing contig between nodes ref0538143e5 & ref0538143.0e3 - [trim 0, 0] 2017-11-14 09:45:28,056 [DEBUG] contig 0 to 402 2017-11-14 09:45:28,056 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,056 [DEBUG] Moving from ref0538143.0e3 to ref0538143.1e5 (p=1) 2017-11-14 09:45:28,056 [DEBUG] unimproved gap 2017-11-14 09:45:28,057 [DEBUG] Moving from ref0538143.1e5 to ref0538143.1e3 (p=1) 2017-11-14 09:45:28,057 [DEBUG] contig 2017-11-14 09:45:28,057 [DEBUG] who? ref0538143.1e5 ref0538143.1e3 2017-11-14 09:45:28,057 [DEBUG] Grabbing contig between nodes ref0538143.1e5 & ref0538143.1e3 - [trim 0, 0] 2017-11-14 09:45:28,057 [DEBUG] contig 430 to 467 2017-11-14 09:45:28,057 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,057 [DEBUG] Moving from ref0538143.1e3 to ref0538143.2e5 (p=1) 2017-11-14 09:45:28,057 [DEBUG] unimproved gap 2017-11-14 09:45:28,057 [DEBUG] Moving from ref0538143.2e5 to ref0538143.2e3 (p=1) 2017-11-14 09:45:28,057 [DEBUG] contig 2017-11-14 09:45:28,057 [DEBUG] who? ref0538143.2e5 ref0538143.2e3 2017-11-14 09:45:28,057 [DEBUG] Grabbing contig between nodes ref0538143.2e5 & ref0538143.2e3 - [trim 0, 0] 2017-11-14 09:45:28,057 [DEBUG] contig 502 to 1600 2017-11-14 09:45:28,057 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,058 [DEBUG] Moving from ref0538143.2e3 to ref0538143.3e5 (p=1) 2017-11-14 09:45:28,058 [DEBUG] unimproved gap 2017-11-14 09:45:28,058 [DEBUG] Moving from ref0538143.3e5 to ref0538143.3e3 (p=1) 2017-11-14 09:45:28,058 [DEBUG] contig 2017-11-14 09:45:28,058 [DEBUG] who? ref0538143.3e5 ref0538143.3e3 2017-11-14 09:45:28,058 [DEBUG] Grabbing contig between nodes ref0538143.3e5 & ref0538143.3e3 - [trim 0, 0] 2017-11-14 09:45:28,058 [DEBUG] contig 1733 to 1766 2017-11-14 09:45:28,058 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,058 [DEBUG] Moving from ref0538143.3e3 to ref0538143.4e5 (p=1) 2017-11-14 09:45:28,058 [DEBUG] unimproved gap 2017-11-14 09:45:28,058 [DEBUG] Moving from ref0538143.4e5 to ref0538143.4e3 (p=1) 2017-11-14 09:45:28,058 [DEBUG] contig 2017-11-14 09:45:28,058 [DEBUG] who? ref0538143.4e5 ref0538143.4e3 2017-11-14 09:45:28,059 [DEBUG] Grabbing contig between nodes ref0538143.4e5 & ref0538143.4e3 - [trim 0, 0] 2017-11-14 09:45:28,059 [DEBUG] contig 1885 to 1995 2017-11-14 09:45:28,059 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,059 [DEBUG] Moving from ref0538143.4e3 to ref0538143.5e5 (p=1) 2017-11-14 09:45:28,059 [DEBUG] unimproved gap 2017-11-14 09:45:28,059 [DEBUG] Moving from ref0538143.5e5 to ref0538143.5e3 (p=1) 2017-11-14 09:45:28,059 [DEBUG] contig 2017-11-14 09:45:28,059 [DEBUG] who? ref0538143.5e5 ref0538143.5e3 2017-11-14 09:45:28,059 [DEBUG] Grabbing contig between nodes ref0538143.5e5 & ref0538143.5e3 - [trim 0, 0] 2017-11-14 09:45:28,059 [DEBUG] contig 2129 to 2293 2017-11-14 09:45:28,059 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,059 [DEBUG] Moving from ref0538143.5e3 to ref0538143.6e5 (p=1) 2017-11-14 09:45:28,059 [DEBUG] unimproved gap 2017-11-14 09:45:28,060 [DEBUG] Moving from ref0538143.6e5 to ref0538143.6e3 (p=1) 2017-11-14 09:45:28,060 [DEBUG] contig 2017-11-14 09:45:28,060 [DEBUG] who? ref0538143.6e5 ref0538143.6e3 2017-11-14 09:45:28,060 [DEBUG] Grabbing contig between nodes ref0538143.6e5 & ref0538143.6e3 - [trim 0, 0] 2017-11-14 09:45:28,060 [DEBUG] contig 2550 to 3496 2017-11-14 09:45:28,060 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,060 [DEBUG] Moving from ref0538143.6e3 to ref0538143.7e5 (p=1) 2017-11-14 09:45:28,060 [DEBUG] unimproved gap 2017-11-14 09:45:28,060 [DEBUG] Moving from ref0538143.7e5 to ref0538143.7e3 (p=1) 2017-11-14 09:45:28,060 [DEBUG] contig 2017-11-14 09:45:28,060 [DEBUG] who? ref0538143.7e5 ref0538143.7e3 2017-11-14 09:45:28,060 [DEBUG] Grabbing contig between nodes ref0538143.7e5 & ref0538143.7e3 - [trim 0, 0] 2017-11-14 09:45:28,061 [DEBUG] contig 3830 to 4111 2017-11-14 09:45:28,061 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,061 [DEBUG] Moving from ref0538143.7e3 to ref0538143.8e5 (p=1) 2017-11-14 09:45:28,061 [DEBUG] unimproved gap 2017-11-14 09:45:28,061 [DEBUG] Moving from ref0538143.8e5 to ref0538143.8e3 (p=1) 2017-11-14 09:45:28,061 [DEBUG] contig 2017-11-14 09:45:28,061 [DEBUG] who? ref0538143.8e5 ref0538143.8e3 2017-11-14 09:45:28,061 [DEBUG] Grabbing contig between nodes ref0538143.8e5 & ref0538143.8e3 - [trim 0, 0] 2017-11-14 09:45:28,061 [DEBUG] contig 4182 to 5872 2017-11-14 09:45:28,061 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,061 [DEBUG] Moving from ref0538143.8e3 to ref0538143.9e5 (p=1) 2017-11-14 09:45:28,061 [DEBUG] unimproved gap 2017-11-14 09:45:28,061 [DEBUG] Moving from ref0538143.9e5 to ref0538143.9e3 (p=1) 2017-11-14 09:45:28,062 [DEBUG] contig 2017-11-14 09:45:28,062 [DEBUG] who? ref0538143.9e5 ref0538143.9e3 2017-11-14 09:45:28,062 [DEBUG] Grabbing contig between nodes ref0538143.9e5 & ref0538143.9e3 - [trim 0, 0] 2017-11-14 09:45:28,062 [DEBUG] contig 6048 to 9081 2017-11-14 09:45:28,062 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,062 [DEBUG] Moving from ref0538143.9e3 to ref0538143.10e5 (p=1) 2017-11-14 09:45:28,062 [DEBUG] unimproved gap 2017-11-14 09:45:28,062 [DEBUG] Moving from ref0538143.10e5 to ref0538143.10e3 (p=1) 2017-11-14 09:45:28,062 [DEBUG] contig 2017-11-14 09:45:28,062 [DEBUG] who? ref0538143.10e5 ref0538143.10e3 2017-11-14 09:45:28,062 [DEBUG] Grabbing contig between nodes ref0538143.10e5 & ref0538143.10e3 - [trim 0, 0] 2017-11-14 09:45:28,062 [DEBUG] contig 9290 to 13720 2017-11-14 09:45:28,062 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,063 [DEBUG] Moving from ref0538143.10e3 to ref0538143.11e5 (p=1) 2017-11-14 09:45:28,063 [DEBUG] unimproved gap 2017-11-14 09:45:28,063 [DEBUG] Moving from ref0538143.11e5 to ref0538143.11e3 (p=1) 2017-11-14 09:45:28,063 [DEBUG] contig 2017-11-14 09:45:28,063 [DEBUG] who? ref0538143.11e5 ref0538143.11e3 2017-11-14 09:45:28,063 [DEBUG] Grabbing contig between nodes ref0538143.11e5 & ref0538143.11e3 - [trim 0, 0] 2017-11-14 09:45:28,063 [DEBUG] contig 14325 to 14490 2017-11-14 09:45:28,063 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,063 [DEBUG] Moving from ref0538143.11e3 to ref0538143.12e5 (p=1) 2017-11-14 09:45:28,063 [DEBUG] unimproved gap 2017-11-14 09:45:28,063 [DEBUG] Moving from ref0538143.12e5 to ref0538143.12e3 (p=1) 2017-11-14 09:45:28,063 [DEBUG] contig 2017-11-14 09:45:28,063 [DEBUG] who? ref0538143.12e5 ref0538143.12e3 2017-11-14 09:45:28,064 [DEBUG] Grabbing contig between nodes ref0538143.12e5 & ref0538143.12e3 - [trim 0, 0] 2017-11-14 09:45:28,064 [DEBUG] contig 14533 to 14938 2017-11-14 09:45:28,064 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,064 [DEBUG] Moving from ref0538143.12e3 to ref0538143.13e5 (p=1) 2017-11-14 09:45:28,064 [DEBUG] unimproved gap 2017-11-14 09:45:28,064 [DEBUG] Moving from ref0538143.13e5 to ref0538143.13e3 (p=1) 2017-11-14 09:45:28,064 [DEBUG] contig 2017-11-14 09:45:28,064 [DEBUG] who? ref0538143.13e5 ref0538143.13e3 2017-11-14 09:45:28,064 [DEBUG] Grabbing contig between nodes ref0538143.13e5 & ref0538143.13e3 - [trim 0, 0] 2017-11-14 09:45:28,064 [DEBUG] contig 15293 to 15338 2017-11-14 09:45:28,064 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,064 [DEBUG] Moving from ref0538143.13e3 to ref0538143.14e5 (p=1) 2017-11-14 09:45:28,064 [DEBUG] unimproved gap 2017-11-14 09:45:28,065 [DEBUG] Moving from ref0538143.14e5 to ref0538143.14e3 (p=1) 2017-11-14 09:45:28,065 [DEBUG] contig 2017-11-14 09:45:28,065 [DEBUG] who? ref0538143.14e5 ref0538143.14e3 2017-11-14 09:45:28,065 [DEBUG] Grabbing contig between nodes ref0538143.14e5 & ref0538143.14e3 - [trim 0, 0] 2017-11-14 09:45:28,065 [DEBUG] contig 15989 to 16890 2017-11-14 09:45:28,065 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,065 [DEBUG] Moving from ref0538143.14e3 to ref0538143.15e5 (p=1) 2017-11-14 09:45:28,065 [DEBUG] unimproved gap 2017-11-14 09:45:28,065 [DEBUG] Moving from ref0538143.15e5 to ref0538143.15e3 (p=1) 2017-11-14 09:45:28,065 [DEBUG] contig 2017-11-14 09:45:28,065 [DEBUG] who? ref0538143.15e5 ref0538143.15e3 2017-11-14 09:45:28,065 [DEBUG] Grabbing contig between nodes ref0538143.15e5 & ref0538143.15e3 - [trim 0, 0] 2017-11-14 09:45:28,065 [DEBUG] contig 17523 to 18372 2017-11-14 09:45:28,066 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,066 [DEBUG] Moving from ref0538143.15e3 to ref0538143.16e5 (p=1) 2017-11-14 09:45:28,066 [DEBUG] unimproved gap 2017-11-14 09:45:28,066 [DEBUG] Moving from ref0538143.16e5 to ref0538143.16e3 (p=1) 2017-11-14 09:45:28,066 [DEBUG] contig 2017-11-14 09:45:28,066 [DEBUG] who? ref0538143.16e5 ref0538143.16e3 2017-11-14 09:45:28,066 [DEBUG] Grabbing contig between nodes ref0538143.16e5 & ref0538143.16e3 - [trim 0, 0] 2017-11-14 09:45:28,066 [DEBUG] contig 18881 to 19300 2017-11-14 09:45:28,066 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,066 [DEBUG] Moving from ref0538143.16e3 to ref0538143.17e5 (p=1) 2017-11-14 09:45:28,066 [DEBUG] unimproved gap 2017-11-14 09:45:28,066 [DEBUG] Moving from ref0538143.17e5 to ref0538143.17e3 (p=1) 2017-11-14 09:45:28,066 [DEBUG] contig 2017-11-14 09:45:28,067 [DEBUG] who? ref0538143.17e5 ref0538143.17e3 2017-11-14 09:45:28,067 [DEBUG] Grabbing contig between nodes ref0538143.17e5 & ref0538143.17e3 - [trim 0, 0] 2017-11-14 09:45:28,067 [DEBUG] contig 19470 to 19525 2017-11-14 09:45:28,067 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,067 [DEBUG] Moving from ref0538143.17e3 to ref0538143.18e5 (p=1) 2017-11-14 09:45:28,067 [DEBUG] unimproved gap 2017-11-14 09:45:28,067 [DEBUG] Moving from ref0538143.18e5 to ref0538143e3 (p=1) 2017-11-14 09:45:28,067 [DEBUG] contig 2017-11-14 09:45:28,067 [DEBUG] who? ref0538143.18e5 ref0538143e3 2017-11-14 09:45:28,067 [DEBUG] Grabbing contig between nodes ref0538143.18e5 & ref0538143e3 - [trim 0, 0] 2017-11-14 09:45:28,067 [DEBUG] contig 19810 to 20593 2017-11-14 09:45:28,067 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,068 [DEBUG] Contig 48 2017-11-14 09:45:28,070 [DEBUG] Moving from ref0246383e5 to ref0246383.0e3 (p=1) 2017-11-14 09:45:28,070 [DEBUG] contig 2017-11-14 09:45:28,070 [DEBUG] who? ref0246383e5 ref0246383.0e3 2017-11-14 09:45:28,070 [DEBUG] Grabbing contig between nodes ref0246383e5 & ref0246383.0e3 - [trim 0, 0] 2017-11-14 09:45:28,070 [DEBUG] contig 0 to 2305 2017-11-14 09:45:28,070 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,070 [DEBUG] Moving from ref0246383.0e3 to ref0246383.1e5 (p=1) 2017-11-14 09:45:28,070 [DEBUG] unimproved gap 2017-11-14 09:45:28,070 [DEBUG] Moving from ref0246383.1e5 to ref0246383.1e3 (p=1) 2017-11-14 09:45:28,071 [DEBUG] contig 2017-11-14 09:45:28,071 [DEBUG] who? ref0246383.1e5 ref0246383.1e3 2017-11-14 09:45:28,071 [DEBUG] Grabbing contig between nodes ref0246383.1e5 & ref0246383.1e3 - [trim 0, 0] 2017-11-14 09:45:28,071 [DEBUG] contig 2380 to 2614 2017-11-14 09:45:28,071 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,071 [DEBUG] Moving from ref0246383.1e3 to ref0246383.2e5 (p=1) 2017-11-14 09:45:28,071 [DEBUG] unimproved gap 2017-11-14 09:45:28,071 [DEBUG] Moving from ref0246383.2e5 to ref0246383.2e3 (p=1) 2017-11-14 09:45:28,071 [DEBUG] contig 2017-11-14 09:45:28,071 [DEBUG] who? ref0246383.2e5 ref0246383.2e3 2017-11-14 09:45:28,071 [DEBUG] Grabbing contig between nodes ref0246383.2e5 & ref0246383.2e3 - [trim 0, 0] 2017-11-14 09:45:28,071 [DEBUG] contig 2757 to 7529 2017-11-14 09:45:28,071 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,072 [DEBUG] Moving from ref0246383.2e3 to ref0246383.3e5 (p=1) 2017-11-14 09:45:28,072 [DEBUG] unimproved gap 2017-11-14 09:45:28,072 [DEBUG] Moving from ref0246383.3e5 to ref0246383.3e3 (p=1) 2017-11-14 09:45:28,072 [DEBUG] contig 2017-11-14 09:45:28,072 [DEBUG] who? ref0246383.3e5 ref0246383.3e3 2017-11-14 09:45:28,072 [DEBUG] Grabbing contig between nodes ref0246383.3e5 & ref0246383.3e3 - [trim 0, 0] 2017-11-14 09:45:28,072 [DEBUG] contig 8085 to 8361 2017-11-14 09:45:28,072 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,072 [DEBUG] Moving from ref0246383.3e3 to ref0246383.4e5 (p=1) 2017-11-14 09:45:28,072 [DEBUG] unimproved gap 2017-11-14 09:45:28,072 [DEBUG] Moving from ref0246383.4e5 to ref0246383.4e3 (p=1) 2017-11-14 09:45:28,072 [DEBUG] contig 2017-11-14 09:45:28,072 [DEBUG] who? ref0246383.4e5 ref0246383.4e3 2017-11-14 09:45:28,073 [DEBUG] Grabbing contig between nodes ref0246383.4e5 & ref0246383.4e3 - [trim 0, 0] 2017-11-14 09:45:28,073 [DEBUG] contig 8968 to 11796 2017-11-14 09:45:28,073 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,073 [DEBUG] Moving from ref0246383.4e3 to ref0246383.5e5 (p=1) 2017-11-14 09:45:28,073 [DEBUG] unimproved gap 2017-11-14 09:45:28,073 [DEBUG] Moving from ref0246383.5e5 to ref0246383.5e3 (p=1) 2017-11-14 09:45:28,073 [DEBUG] contig 2017-11-14 09:45:28,073 [DEBUG] who? ref0246383.5e5 ref0246383.5e3 2017-11-14 09:45:28,073 [DEBUG] Grabbing contig between nodes ref0246383.5e5 & ref0246383.5e3 - [trim 0, 0] 2017-11-14 09:45:28,073 [DEBUG] contig 11985 to 14549 2017-11-14 09:45:28,073 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,073 [DEBUG] Moving from ref0246383.5e3 to ref0246383.6e5 (p=1) 2017-11-14 09:45:28,073 [DEBUG] unimproved gap 2017-11-14 09:45:28,074 [DEBUG] Moving from ref0246383.6e5 to ref0246383.6e3 (p=1) 2017-11-14 09:45:28,074 [DEBUG] contig 2017-11-14 09:45:28,074 [DEBUG] who? ref0246383.6e5 ref0246383.6e3 2017-11-14 09:45:28,074 [DEBUG] Grabbing contig between nodes ref0246383.6e5 & ref0246383.6e3 - [trim 0, 0] 2017-11-14 09:45:28,074 [DEBUG] contig 14651 to 15275 2017-11-14 09:45:28,074 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,074 [DEBUG] Moving from ref0246383.6e3 to ref0246383.7e5 (p=1) 2017-11-14 09:45:28,074 [DEBUG] unimproved gap 2017-11-14 09:45:28,074 [DEBUG] Moving from ref0246383.7e5 to ref0246383.7e3 (p=1) 2017-11-14 09:45:28,074 [DEBUG] contig 2017-11-14 09:45:28,074 [DEBUG] who? ref0246383.7e5 ref0246383.7e3 2017-11-14 09:45:28,074 [DEBUG] Grabbing contig between nodes ref0246383.7e5 & ref0246383.7e3 - [trim 0, 0] 2017-11-14 09:45:28,074 [DEBUG] contig 15359 to 16846 2017-11-14 09:45:28,075 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,075 [DEBUG] Moving from ref0246383.7e3 to ref0246383.8e5 (p=1) 2017-11-14 09:45:28,075 [DEBUG] unimproved gap 2017-11-14 09:45:28,075 [DEBUG] Moving from ref0246383.8e5 to ref0246383.8e3 (p=1) 2017-11-14 09:45:28,075 [DEBUG] contig 2017-11-14 09:45:28,075 [DEBUG] who? ref0246383.8e5 ref0246383.8e3 2017-11-14 09:45:28,075 [DEBUG] Grabbing contig between nodes ref0246383.8e5 & ref0246383.8e3 - [trim 0, 0] 2017-11-14 09:45:28,075 [DEBUG] contig 16898 to 20127 2017-11-14 09:45:28,075 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,075 [DEBUG] Moving from ref0246383.8e3 to ref0246383.9e5 (p=1) 2017-11-14 09:45:28,075 [DEBUG] unimproved gap 2017-11-14 09:45:28,075 [DEBUG] Moving from ref0246383.9e5 to ref0246383.9e3 (p=1) 2017-11-14 09:45:28,076 [DEBUG] contig 2017-11-14 09:45:28,076 [DEBUG] who? ref0246383.9e5 ref0246383.9e3 2017-11-14 09:45:28,076 [DEBUG] Grabbing contig between nodes ref0246383.9e5 & ref0246383.9e3 - [trim 0, 0] 2017-11-14 09:45:28,076 [DEBUG] contig 20294 to 20550 2017-11-14 09:45:28,076 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,076 [DEBUG] Moving from ref0246383.9e3 to ref0246383.10e5 (p=1) 2017-11-14 09:45:28,076 [DEBUG] unimproved gap 2017-11-14 09:45:28,076 [DEBUG] Moving from ref0246383.10e5 to ref0246383.10e3 (p=1) 2017-11-14 09:45:28,076 [DEBUG] contig 2017-11-14 09:45:28,076 [DEBUG] who? ref0246383.10e5 ref0246383.10e3 2017-11-14 09:45:28,076 [DEBUG] Grabbing contig between nodes ref0246383.10e5 & ref0246383.10e3 - [trim 0, 0] 2017-11-14 09:45:28,076 [DEBUG] contig 20599 to 25754 2017-11-14 09:45:28,076 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,077 [DEBUG] Moving from ref0246383.10e3 to ref0246383.11e5 (p=1) 2017-11-14 09:45:28,077 [DEBUG] unimproved gap 2017-11-14 09:45:28,077 [DEBUG] Moving from ref0246383.11e5 to ref0246383.11e3 (p=1) 2017-11-14 09:45:28,077 [DEBUG] contig 2017-11-14 09:45:28,077 [DEBUG] who? ref0246383.11e5 ref0246383.11e3 2017-11-14 09:45:28,077 [DEBUG] Grabbing contig between nodes ref0246383.11e5 & ref0246383.11e3 - [trim 0, 0] 2017-11-14 09:45:28,077 [DEBUG] contig 26287 to 26347 2017-11-14 09:45:28,077 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,077 [DEBUG] Moving from ref0246383.11e3 to ref0246383.12e5 (p=1) 2017-11-14 09:45:28,077 [DEBUG] unimproved gap 2017-11-14 09:45:28,077 [DEBUG] Moving from ref0246383.12e5 to ref0246383.12e3 (p=1) 2017-11-14 09:45:28,077 [DEBUG] contig 2017-11-14 09:45:28,077 [DEBUG] who? ref0246383.12e5 ref0246383.12e3 2017-11-14 09:45:28,078 [DEBUG] Grabbing contig between nodes ref0246383.12e5 & ref0246383.12e3 - [trim 0, 0] 2017-11-14 09:45:28,078 [DEBUG] contig 26489 to 27554 2017-11-14 09:45:28,078 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,078 [DEBUG] Moving from ref0246383.12e3 to ref0246383.13e5 (p=1) 2017-11-14 09:45:28,078 [DEBUG] unimproved gap 2017-11-14 09:45:28,078 [DEBUG] Moving from ref0246383.13e5 to ref0246383.13e3 (p=1) 2017-11-14 09:45:28,078 [DEBUG] contig 2017-11-14 09:45:28,078 [DEBUG] who? ref0246383.13e5 ref0246383.13e3 2017-11-14 09:45:28,078 [DEBUG] Grabbing contig between nodes ref0246383.13e5 & ref0246383.13e3 - [trim 0, 0] 2017-11-14 09:45:28,078 [DEBUG] contig 27805 to 33065 2017-11-14 09:45:28,078 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,078 [DEBUG] Moving from ref0246383.13e3 to ref0246383.14e5 (p=1) 2017-11-14 09:45:28,078 [DEBUG] unimproved gap 2017-11-14 09:45:28,079 [DEBUG] Moving from ref0246383.14e5 to ref0246383.14e3 (p=1) 2017-11-14 09:45:28,079 [DEBUG] contig 2017-11-14 09:45:28,079 [DEBUG] who? ref0246383.14e5 ref0246383.14e3 2017-11-14 09:45:28,079 [DEBUG] Grabbing contig between nodes ref0246383.14e5 & ref0246383.14e3 - [trim 0, 0] 2017-11-14 09:45:28,079 [DEBUG] contig 33286 to 33482 2017-11-14 09:45:28,079 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,079 [DEBUG] Moving from ref0246383.14e3 to ref0246383.15e5 (p=1) 2017-11-14 09:45:28,079 [DEBUG] unimproved gap 2017-11-14 09:45:28,079 [DEBUG] Moving from ref0246383.15e5 to ref0246383.15e3 (p=1) 2017-11-14 09:45:28,079 [DEBUG] contig 2017-11-14 09:45:28,079 [DEBUG] who? ref0246383.15e5 ref0246383.15e3 2017-11-14 09:45:28,079 [DEBUG] Grabbing contig between nodes ref0246383.15e5 & ref0246383.15e3 - [trim 0, 0] 2017-11-14 09:45:28,080 [DEBUG] contig 33600 to 35905 2017-11-14 09:45:28,080 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,080 [DEBUG] Moving from ref0246383.15e3 to ref0246383.16e5 (p=1) 2017-11-14 09:45:28,080 [DEBUG] unimproved gap 2017-11-14 09:45:28,080 [DEBUG] Moving from ref0246383.16e5 to ref0246383.16e3 (p=1) 2017-11-14 09:45:28,080 [DEBUG] contig 2017-11-14 09:45:28,080 [DEBUG] who? ref0246383.16e5 ref0246383.16e3 2017-11-14 09:45:28,080 [DEBUG] Grabbing contig between nodes ref0246383.16e5 & ref0246383.16e3 - [trim 0, 0] 2017-11-14 09:45:28,080 [DEBUG] contig 35996 to 43083 2017-11-14 09:45:28,080 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,080 [DEBUG] Moving from ref0246383.16e3 to ref0246383.17e5 (p=1) 2017-11-14 09:45:28,080 [DEBUG] unimproved gap 2017-11-14 09:45:28,080 [DEBUG] Moving from ref0246383.17e5 to ref0246383.17e3 (p=1) 2017-11-14 09:45:28,081 [DEBUG] contig 2017-11-14 09:45:28,081 [DEBUG] who? ref0246383.17e5 ref0246383.17e3 2017-11-14 09:45:28,081 [DEBUG] Grabbing contig between nodes ref0246383.17e5 & ref0246383.17e3 - [trim 0, 0] 2017-11-14 09:45:28,081 [DEBUG] contig 43381 to 43737 2017-11-14 09:45:28,081 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,081 [DEBUG] Moving from ref0246383.17e3 to ref0246383.18e5 (p=1) 2017-11-14 09:45:28,081 [DEBUG] unimproved gap 2017-11-14 09:45:28,081 [DEBUG] Moving from ref0246383.18e5 to ref0246383e3 (p=1) 2017-11-14 09:45:28,081 [DEBUG] contig 2017-11-14 09:45:28,081 [DEBUG] who? ref0246383.18e5 ref0246383e3 2017-11-14 09:45:28,081 [DEBUG] Grabbing contig between nodes ref0246383.18e5 & ref0246383e3 - [trim 0, 0] 2017-11-14 09:45:28,081 [DEBUG] contig 44032 to 45578 2017-11-14 09:45:28,081 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,082 [DEBUG] Contig 49 2017-11-14 09:45:28,084 [DEBUG] Moving from ref0056526e5 to ref0056526.0e3 (p=1) 2017-11-14 09:45:28,084 [DEBUG] contig 2017-11-14 09:45:28,084 [DEBUG] who? ref0056526e5 ref0056526.0e3 2017-11-14 09:45:28,084 [DEBUG] Grabbing contig between nodes ref0056526e5 & ref0056526.0e3 - [trim 0, 0] 2017-11-14 09:45:28,084 [DEBUG] contig 0 to 146 2017-11-14 09:45:28,084 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,084 [DEBUG] Moving from ref0056526.0e3 to ref0056526.1e5 (p=1) 2017-11-14 09:45:28,084 [DEBUG] unimproved gap 2017-11-14 09:45:28,084 [DEBUG] Moving from ref0056526.1e5 to ref0056526.1e3 (p=1) 2017-11-14 09:45:28,085 [DEBUG] contig 2017-11-14 09:45:28,085 [DEBUG] who? ref0056526.1e5 ref0056526.1e3 2017-11-14 09:45:28,085 [DEBUG] Grabbing contig between nodes ref0056526.1e5 & ref0056526.1e3 - [trim 0, 0] 2017-11-14 09:45:28,085 [DEBUG] contig 395 to 450 2017-11-14 09:45:28,085 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,085 [DEBUG] Moving from ref0056526.1e3 to ref0056526.2e5 (p=1) 2017-11-14 09:45:28,085 [DEBUG] unimproved gap 2017-11-14 09:45:28,085 [DEBUG] Moving from ref0056526.2e5 to ref0056526.2e3 (p=1) 2017-11-14 09:45:28,085 [DEBUG] contig 2017-11-14 09:45:28,085 [DEBUG] who? ref0056526.2e5 ref0056526.2e3 2017-11-14 09:45:28,085 [DEBUG] Grabbing contig between nodes ref0056526.2e5 & ref0056526.2e3 - [trim 0, 0] 2017-11-14 09:45:28,085 [DEBUG] contig 751 to 1445 2017-11-14 09:45:28,085 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,086 [DEBUG] Moving from ref0056526.2e3 to ref0056526.3e5 (p=1) 2017-11-14 09:45:28,086 [DEBUG] unimproved gap 2017-11-14 09:45:28,086 [DEBUG] Moving from ref0056526.3e5 to ref0056526.3e3 (p=1) 2017-11-14 09:45:28,086 [DEBUG] contig 2017-11-14 09:45:28,086 [DEBUG] who? ref0056526.3e5 ref0056526.3e3 2017-11-14 09:45:28,086 [DEBUG] Grabbing contig between nodes ref0056526.3e5 & ref0056526.3e3 - [trim 0, 0] 2017-11-14 09:45:28,086 [DEBUG] contig 1563 to 3035 2017-11-14 09:45:28,086 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,086 [DEBUG] Moving from ref0056526.3e3 to ref0056526.4e5 (p=1) 2017-11-14 09:45:28,086 [DEBUG] unimproved gap 2017-11-14 09:45:28,086 [DEBUG] Moving from ref0056526.4e5 to ref0056526.4e3 (p=1) 2017-11-14 09:45:28,086 [DEBUG] contig 2017-11-14 09:45:28,086 [DEBUG] who? ref0056526.4e5 ref0056526.4e3 2017-11-14 09:45:28,086 [DEBUG] Grabbing contig between nodes ref0056526.4e5 & ref0056526.4e3 - [trim 0, 0] 2017-11-14 09:45:28,087 [DEBUG] contig 3185 to 4077 2017-11-14 09:45:28,087 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,087 [DEBUG] Moving from ref0056526.4e3 to ref0056526.5e5 (p=1) 2017-11-14 09:45:28,087 [DEBUG] unimproved gap 2017-11-14 09:45:28,087 [DEBUG] Moving from ref0056526.5e5 to ref0056526.5e3 (p=1) 2017-11-14 09:45:28,087 [DEBUG] contig 2017-11-14 09:45:28,087 [DEBUG] who? ref0056526.5e5 ref0056526.5e3 2017-11-14 09:45:28,087 [DEBUG] Grabbing contig between nodes ref0056526.5e5 & ref0056526.5e3 - [trim 0, 0] 2017-11-14 09:45:28,087 [DEBUG] contig 4467 to 4513 2017-11-14 09:45:28,087 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,087 [DEBUG] Moving from ref0056526.5e3 to ref0056526.6e5 (p=1) 2017-11-14 09:45:28,087 [DEBUG] unimproved gap 2017-11-14 09:45:28,087 [DEBUG] Moving from ref0056526.6e5 to ref0056526.6e3 (p=1) 2017-11-14 09:45:28,088 [DEBUG] contig 2017-11-14 09:45:28,088 [DEBUG] who? ref0056526.6e5 ref0056526.6e3 2017-11-14 09:45:28,088 [DEBUG] Grabbing contig between nodes ref0056526.6e5 & ref0056526.6e3 - [trim 0, 0] 2017-11-14 09:45:28,088 [DEBUG] contig 4734 to 11434 2017-11-14 09:45:28,088 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,088 [DEBUG] Moving from ref0056526.6e3 to ref0056526.7e5 (p=1) 2017-11-14 09:45:28,088 [DEBUG] unimproved gap 2017-11-14 09:45:28,088 [DEBUG] Moving from ref0056526.7e5 to ref0056526.7e3 (p=1) 2017-11-14 09:45:28,088 [DEBUG] contig 2017-11-14 09:45:28,088 [DEBUG] who? ref0056526.7e5 ref0056526.7e3 2017-11-14 09:45:28,088 [DEBUG] Grabbing contig between nodes ref0056526.7e5 & ref0056526.7e3 - [trim 0, 0] 2017-11-14 09:45:28,088 [DEBUG] contig 11539 to 12833 2017-11-14 09:45:28,088 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,089 [DEBUG] Moving from ref0056526.7e3 to ref0056526.8e5 (p=1) 2017-11-14 09:45:28,089 [DEBUG] unimproved gap 2017-11-14 09:45:28,089 [DEBUG] Moving from ref0056526.8e5 to ref0056526.8e3 (p=1) 2017-11-14 09:45:28,089 [DEBUG] contig 2017-11-14 09:45:28,089 [DEBUG] who? ref0056526.8e5 ref0056526.8e3 2017-11-14 09:45:28,089 [DEBUG] Grabbing contig between nodes ref0056526.8e5 & ref0056526.8e3 - [trim 0, 0] 2017-11-14 09:45:28,089 [DEBUG] contig 13025 to 14269 2017-11-14 09:45:28,089 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,089 [DEBUG] Moving from ref0056526.8e3 to ref0056526.9e5 (p=1) 2017-11-14 09:45:28,089 [DEBUG] unimproved gap 2017-11-14 09:45:28,089 [DEBUG] Moving from ref0056526.9e5 to ref0056526.9e3 (p=1) 2017-11-14 09:45:28,089 [DEBUG] contig 2017-11-14 09:45:28,089 [DEBUG] who? ref0056526.9e5 ref0056526.9e3 2017-11-14 09:45:28,090 [DEBUG] Grabbing contig between nodes ref0056526.9e5 & ref0056526.9e3 - [trim 0, 0] 2017-11-14 09:45:28,090 [DEBUG] contig 14373 to 15070 2017-11-14 09:45:28,090 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,090 [DEBUG] Moving from ref0056526.9e3 to ref0056526.10e5 (p=1) 2017-11-14 09:45:28,090 [DEBUG] unimproved gap 2017-11-14 09:45:28,090 [DEBUG] Moving from ref0056526.10e5 to ref0056526.10e3 (p=1) 2017-11-14 09:45:28,090 [DEBUG] contig 2017-11-14 09:45:28,090 [DEBUG] who? ref0056526.10e5 ref0056526.10e3 2017-11-14 09:45:28,090 [DEBUG] Grabbing contig between nodes ref0056526.10e5 & ref0056526.10e3 - [trim 0, 0] 2017-11-14 09:45:28,090 [DEBUG] contig 15260 to 15293 2017-11-14 09:45:28,090 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,090 [DEBUG] Moving from ref0056526.10e3 to ref0056526.11e5 (p=1) 2017-11-14 09:45:28,091 [DEBUG] unimproved gap 2017-11-14 09:45:28,091 [DEBUG] Moving from ref0056526.11e5 to ref0056526.11e3 (p=1) 2017-11-14 09:45:28,091 [DEBUG] contig 2017-11-14 09:45:28,091 [DEBUG] who? ref0056526.11e5 ref0056526.11e3 2017-11-14 09:45:28,091 [DEBUG] Grabbing contig between nodes ref0056526.11e5 & ref0056526.11e3 - [trim 0, 0] 2017-11-14 09:45:28,091 [DEBUG] contig 15630 to 16029 2017-11-14 09:45:28,091 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,091 [DEBUG] Moving from ref0056526.11e3 to ref0056526.12e5 (p=1) 2017-11-14 09:45:28,091 [DEBUG] unimproved gap 2017-11-14 09:45:28,091 [DEBUG] Moving from ref0056526.12e5 to ref0056526.12e3 (p=1) 2017-11-14 09:45:28,091 [DEBUG] contig 2017-11-14 09:45:28,091 [DEBUG] who? ref0056526.12e5 ref0056526.12e3 2017-11-14 09:45:28,091 [DEBUG] Grabbing contig between nodes ref0056526.12e5 & ref0056526.12e3 - [trim 0, 0] 2017-11-14 09:45:28,092 [DEBUG] contig 16168 to 20389 2017-11-14 09:45:28,092 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,092 [DEBUG] Moving from ref0056526.12e3 to ref0056526.13e5 (p=1) 2017-11-14 09:45:28,092 [DEBUG] unimproved gap 2017-11-14 09:45:28,092 [DEBUG] Moving from ref0056526.13e5 to ref0056526.13e3 (p=1) 2017-11-14 09:45:28,092 [DEBUG] contig 2017-11-14 09:45:28,092 [DEBUG] who? ref0056526.13e5 ref0056526.13e3 2017-11-14 09:45:28,092 [DEBUG] Grabbing contig between nodes ref0056526.13e5 & ref0056526.13e3 - [trim 0, 0] 2017-11-14 09:45:28,092 [DEBUG] contig 20659 to 21019 2017-11-14 09:45:28,092 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,092 [DEBUG] Moving from ref0056526.13e3 to ref0056526.14e5 (p=1) 2017-11-14 09:45:28,092 [DEBUG] unimproved gap 2017-11-14 09:45:28,092 [DEBUG] Moving from ref0056526.14e5 to ref0056526.14e3 (p=1) 2017-11-14 09:45:28,093 [DEBUG] contig 2017-11-14 09:45:28,093 [DEBUG] who? ref0056526.14e5 ref0056526.14e3 2017-11-14 09:45:28,093 [DEBUG] Grabbing contig between nodes ref0056526.14e5 & ref0056526.14e3 - [trim 0, 0] 2017-11-14 09:45:28,093 [DEBUG] contig 21187 to 22309 2017-11-14 09:45:28,093 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,093 [DEBUG] Moving from ref0056526.14e3 to ref0056526.15e5 (p=1) 2017-11-14 09:45:28,093 [DEBUG] unimproved gap 2017-11-14 09:45:28,093 [DEBUG] Moving from ref0056526.15e5 to ref0056526.15e3 (p=1) 2017-11-14 09:45:28,093 [DEBUG] contig 2017-11-14 09:45:28,093 [DEBUG] who? ref0056526.15e5 ref0056526.15e3 2017-11-14 09:45:28,093 [DEBUG] Grabbing contig between nodes ref0056526.15e5 & ref0056526.15e3 - [trim 0, 0] 2017-11-14 09:45:28,093 [DEBUG] contig 22471 to 22498 2017-11-14 09:45:28,094 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,094 [DEBUG] Moving from ref0056526.15e3 to ref0056526.16e5 (p=1) 2017-11-14 09:45:28,094 [DEBUG] unimproved gap 2017-11-14 09:45:28,094 [DEBUG] Moving from ref0056526.16e5 to ref0056526.16e3 (p=1) 2017-11-14 09:45:28,094 [DEBUG] contig 2017-11-14 09:45:28,094 [DEBUG] who? ref0056526.16e5 ref0056526.16e3 2017-11-14 09:45:28,094 [DEBUG] Grabbing contig between nodes ref0056526.16e5 & ref0056526.16e3 - [trim 0, 0] 2017-11-14 09:45:28,094 [DEBUG] contig 22737 to 27301 2017-11-14 09:45:28,094 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,094 [DEBUG] Moving from ref0056526.16e3 to ref0056526.17e5 (p=1) 2017-11-14 09:45:28,094 [DEBUG] unimproved gap 2017-11-14 09:45:28,094 [DEBUG] Moving from ref0056526.17e5 to ref0056526.17e3 (p=1) 2017-11-14 09:45:28,094 [DEBUG] contig 2017-11-14 09:45:28,095 [DEBUG] who? ref0056526.17e5 ref0056526.17e3 2017-11-14 09:45:28,095 [DEBUG] Grabbing contig between nodes ref0056526.17e5 & ref0056526.17e3 - [trim 0, 0] 2017-11-14 09:45:28,095 [DEBUG] contig 27515 to 28302 2017-11-14 09:45:28,095 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,095 [DEBUG] Moving from ref0056526.17e3 to ref0056526.18e5 (p=1) 2017-11-14 09:45:28,095 [DEBUG] unimproved gap 2017-11-14 09:45:28,095 [DEBUG] Moving from ref0056526.18e5 to ref0056526e3 (p=1) 2017-11-14 09:45:28,095 [DEBUG] contig 2017-11-14 09:45:28,095 [DEBUG] who? ref0056526.18e5 ref0056526e3 2017-11-14 09:45:28,095 [DEBUG] Grabbing contig between nodes ref0056526.18e5 & ref0056526e3 - [trim 0, 0] 2017-11-14 09:45:28,095 [DEBUG] contig 28637 to 29222 2017-11-14 09:45:28,095 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,096 [DEBUG] Contig 50 2017-11-14 09:45:28,098 [DEBUG] Moving from ref0763264e5 to ref0763264.0e3 (p=1) 2017-11-14 09:45:28,098 [DEBUG] contig 2017-11-14 09:45:28,098 [DEBUG] who? ref0763264e5 ref0763264.0e3 2017-11-14 09:45:28,098 [DEBUG] Grabbing contig between nodes ref0763264e5 & ref0763264.0e3 - [trim 0, 0] 2017-11-14 09:45:28,098 [DEBUG] contig 0 to 144 2017-11-14 09:45:28,098 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,098 [DEBUG] Moving from ref0763264.0e3 to ref0763264.1e5 (p=1) 2017-11-14 09:45:28,098 [DEBUG] unimproved gap 2017-11-14 09:45:28,098 [DEBUG] Moving from ref0763264.1e5 to ref0763264.1e3 (p=1) 2017-11-14 09:45:28,098 [DEBUG] contig 2017-11-14 09:45:28,099 [DEBUG] who? ref0763264.1e5 ref0763264.1e3 2017-11-14 09:45:28,099 [DEBUG] Grabbing contig between nodes ref0763264.1e5 & ref0763264.1e3 - [trim 0, 0] 2017-11-14 09:45:28,099 [DEBUG] contig 196 to 1128 2017-11-14 09:45:28,099 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,099 [DEBUG] Moving from ref0763264.1e3 to ref0763264.2e5 (p=1) 2017-11-14 09:45:28,099 [DEBUG] unimproved gap 2017-11-14 09:45:28,099 [DEBUG] Moving from ref0763264.2e5 to ref0763264.2e3 (p=1) 2017-11-14 09:45:28,099 [DEBUG] contig 2017-11-14 09:45:28,099 [DEBUG] who? ref0763264.2e5 ref0763264.2e3 2017-11-14 09:45:28,099 [DEBUG] Grabbing contig between nodes ref0763264.2e5 & ref0763264.2e3 - [trim 0, 0] 2017-11-14 09:45:28,099 [DEBUG] contig 1574 to 1638 2017-11-14 09:45:28,099 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,099 [DEBUG] Moving from ref0763264.2e3 to ref0763264.3e5 (p=1) 2017-11-14 09:45:28,100 [DEBUG] unimproved gap 2017-11-14 09:45:28,100 [DEBUG] Moving from ref0763264.3e5 to ref0763264.3e3 (p=1) 2017-11-14 09:45:28,100 [DEBUG] contig 2017-11-14 09:45:28,100 [DEBUG] who? ref0763264.3e5 ref0763264.3e3 2017-11-14 09:45:28,100 [DEBUG] Grabbing contig between nodes ref0763264.3e5 & ref0763264.3e3 - [trim 0, 0] 2017-11-14 09:45:28,100 [DEBUG] contig 1977 to 2012 2017-11-14 09:45:28,100 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,100 [DEBUG] Moving from ref0763264.3e3 to ref0763264.4e5 (p=1) 2017-11-14 09:45:28,100 [DEBUG] unimproved gap 2017-11-14 09:45:28,100 [DEBUG] Moving from ref0763264.4e5 to ref0763264.4e3 (p=1) 2017-11-14 09:45:28,100 [DEBUG] contig 2017-11-14 09:45:28,100 [DEBUG] who? ref0763264.4e5 ref0763264.4e3 2017-11-14 09:45:28,100 [DEBUG] Grabbing contig between nodes ref0763264.4e5 & ref0763264.4e3 - [trim 0, 0] 2017-11-14 09:45:28,101 [DEBUG] contig 2161 to 3834 2017-11-14 09:45:28,101 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,101 [DEBUG] Moving from ref0763264.4e3 to ref0763264.5e5 (p=1) 2017-11-14 09:45:28,101 [DEBUG] unimproved gap 2017-11-14 09:45:28,101 [DEBUG] Moving from ref0763264.5e5 to ref0763264.5e3 (p=1) 2017-11-14 09:45:28,101 [DEBUG] contig 2017-11-14 09:45:28,101 [DEBUG] who? ref0763264.5e5 ref0763264.5e3 2017-11-14 09:45:28,101 [DEBUG] Grabbing contig between nodes ref0763264.5e5 & ref0763264.5e3 - [trim 0, 0] 2017-11-14 09:45:28,101 [DEBUG] contig 4082 to 4354 2017-11-14 09:45:28,101 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,101 [DEBUG] Moving from ref0763264.5e3 to ref0763264.6e5 (p=1) 2017-11-14 09:45:28,101 [DEBUG] unimproved gap 2017-11-14 09:45:28,101 [DEBUG] Moving from ref0763264.6e5 to ref0763264.6e3 (p=1) 2017-11-14 09:45:28,102 [DEBUG] contig 2017-11-14 09:45:28,102 [DEBUG] who? ref0763264.6e5 ref0763264.6e3 2017-11-14 09:45:28,102 [DEBUG] Grabbing contig between nodes ref0763264.6e5 & ref0763264.6e3 - [trim 0, 0] 2017-11-14 09:45:28,102 [DEBUG] contig 4837 to 5097 2017-11-14 09:45:28,102 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,102 [DEBUG] Moving from ref0763264.6e3 to ref0763264.7e5 (p=1) 2017-11-14 09:45:28,102 [DEBUG] unimproved gap 2017-11-14 09:45:28,102 [DEBUG] Moving from ref0763264.7e5 to ref0763264.7e3 (p=1) 2017-11-14 09:45:28,102 [DEBUG] contig 2017-11-14 09:45:28,102 [DEBUG] who? ref0763264.7e5 ref0763264.7e3 2017-11-14 09:45:28,102 [DEBUG] Grabbing contig between nodes ref0763264.7e5 & ref0763264.7e3 - [trim 0, 0] 2017-11-14 09:45:28,102 [DEBUG] contig 5533 to 8088 2017-11-14 09:45:28,102 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,102 [DEBUG] Moving from ref0763264.7e3 to ref0763264.8e5 (p=1) 2017-11-14 09:45:28,103 [DEBUG] unimproved gap 2017-11-14 09:45:28,103 [DEBUG] Moving from ref0763264.8e5 to ref0763264.8e3 (p=1) 2017-11-14 09:45:28,103 [DEBUG] contig 2017-11-14 09:45:28,103 [DEBUG] who? ref0763264.8e5 ref0763264.8e3 2017-11-14 09:45:28,103 [DEBUG] Grabbing contig between nodes ref0763264.8e5 & ref0763264.8e3 - [trim 0, 0] 2017-11-14 09:45:28,103 [DEBUG] contig 8302 to 8580 2017-11-14 09:45:28,103 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,103 [DEBUG] Moving from ref0763264.8e3 to ref0763264.9e5 (p=1) 2017-11-14 09:45:28,103 [DEBUG] unimproved gap 2017-11-14 09:45:28,103 [DEBUG] Moving from ref0763264.9e5 to ref0763264.9e3 (p=1) 2017-11-14 09:45:28,103 [DEBUG] contig 2017-11-14 09:45:28,103 [DEBUG] who? ref0763264.9e5 ref0763264.9e3 2017-11-14 09:45:28,103 [DEBUG] Grabbing contig between nodes ref0763264.9e5 & ref0763264.9e3 - [trim 0, 0] 2017-11-14 09:45:28,104 [DEBUG] contig 8752 to 9152 2017-11-14 09:45:28,104 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,104 [DEBUG] Moving from ref0763264.9e3 to ref0763264.10e5 (p=1) 2017-11-14 09:45:28,104 [DEBUG] unimproved gap 2017-11-14 09:45:28,104 [DEBUG] Moving from ref0763264.10e5 to ref0763264.10e3 (p=1) 2017-11-14 09:45:28,104 [DEBUG] contig 2017-11-14 09:45:28,104 [DEBUG] who? ref0763264.10e5 ref0763264.10e3 2017-11-14 09:45:28,104 [DEBUG] Grabbing contig between nodes ref0763264.10e5 & ref0763264.10e3 - [trim 0, 0] 2017-11-14 09:45:28,104 [DEBUG] contig 9681 to 9759 2017-11-14 09:45:28,104 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,104 [DEBUG] Moving from ref0763264.10e3 to ref0763264.11e5 (p=1) 2017-11-14 09:45:28,104 [DEBUG] unimproved gap 2017-11-14 09:45:28,105 [DEBUG] Moving from ref0763264.11e5 to ref0763264.11e3 (p=1) 2017-11-14 09:45:28,105 [DEBUG] contig 2017-11-14 09:45:28,105 [DEBUG] who? ref0763264.11e5 ref0763264.11e3 2017-11-14 09:45:28,105 [DEBUG] Grabbing contig between nodes ref0763264.11e5 & ref0763264.11e3 - [trim 0, 0] 2017-11-14 09:45:28,105 [DEBUG] contig 10239 to 11708 2017-11-14 09:45:28,105 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,105 [DEBUG] Moving from ref0763264.11e3 to ref0763264.12e5 (p=1) 2017-11-14 09:45:28,105 [DEBUG] unimproved gap 2017-11-14 09:45:28,105 [DEBUG] Moving from ref0763264.12e5 to ref0763264.12e3 (p=1) 2017-11-14 09:45:28,105 [DEBUG] contig 2017-11-14 09:45:28,105 [DEBUG] who? ref0763264.12e5 ref0763264.12e3 2017-11-14 09:45:28,105 [DEBUG] Grabbing contig between nodes ref0763264.12e5 & ref0763264.12e3 - [trim 0, 0] 2017-11-14 09:45:28,105 [DEBUG] contig 11916 to 12729 2017-11-14 09:45:28,106 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,106 [DEBUG] Moving from ref0763264.12e3 to ref0763264.13e5 (p=1) 2017-11-14 09:45:28,106 [DEBUG] unimproved gap 2017-11-14 09:45:28,106 [DEBUG] Moving from ref0763264.13e5 to ref0763264.13e3 (p=1) 2017-11-14 09:45:28,106 [DEBUG] contig 2017-11-14 09:45:28,106 [DEBUG] who? ref0763264.13e5 ref0763264.13e3 2017-11-14 09:45:28,106 [DEBUG] Grabbing contig between nodes ref0763264.13e5 & ref0763264.13e3 - [trim 0, 0] 2017-11-14 09:45:28,106 [DEBUG] contig 13069 to 13148 2017-11-14 09:45:28,106 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,106 [DEBUG] Moving from ref0763264.13e3 to ref0763264.14e5 (p=1) 2017-11-14 09:45:28,106 [DEBUG] unimproved gap 2017-11-14 09:45:28,106 [DEBUG] Moving from ref0763264.14e5 to ref0763264.14e3 (p=1) 2017-11-14 09:45:28,106 [DEBUG] contig 2017-11-14 09:45:28,106 [DEBUG] who? ref0763264.14e5 ref0763264.14e3 2017-11-14 09:45:28,107 [DEBUG] Grabbing contig between nodes ref0763264.14e5 & ref0763264.14e3 - [trim 0, 0] 2017-11-14 09:45:28,107 [DEBUG] contig 13736 to 13834 2017-11-14 09:45:28,107 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,107 [DEBUG] Moving from ref0763264.14e3 to ref0763264.15e5 (p=1) 2017-11-14 09:45:28,107 [DEBUG] unimproved gap 2017-11-14 09:45:28,107 [DEBUG] Moving from ref0763264.15e5 to ref0763264.15e3 (p=1) 2017-11-14 09:45:28,107 [DEBUG] contig 2017-11-14 09:45:28,107 [DEBUG] who? ref0763264.15e5 ref0763264.15e3 2017-11-14 09:45:28,107 [DEBUG] Grabbing contig between nodes ref0763264.15e5 & ref0763264.15e3 - [trim 0, 0] 2017-11-14 09:45:28,107 [DEBUG] contig 14270 to 14453 2017-11-14 09:45:28,107 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,107 [DEBUG] Moving from ref0763264.15e3 to ref0763264.16e5 (p=1) 2017-11-14 09:45:28,107 [DEBUG] unimproved gap 2017-11-14 09:45:28,108 [DEBUG] Moving from ref0763264.16e5 to ref0763264.16e3 (p=1) 2017-11-14 09:45:28,108 [DEBUG] contig 2017-11-14 09:45:28,108 [DEBUG] who? ref0763264.16e5 ref0763264.16e3 2017-11-14 09:45:28,108 [DEBUG] Grabbing contig between nodes ref0763264.16e5 & ref0763264.16e3 - [trim 0, 0] 2017-11-14 09:45:28,108 [DEBUG] contig 14646 to 14997 2017-11-14 09:45:28,108 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,108 [DEBUG] Moving from ref0763264.16e3 to ref0763264.17e5 (p=1) 2017-11-14 09:45:28,108 [DEBUG] unimproved gap 2017-11-14 09:45:28,108 [DEBUG] Moving from ref0763264.17e5 to ref0763264.17e3 (p=1) 2017-11-14 09:45:28,108 [DEBUG] contig 2017-11-14 09:45:28,108 [DEBUG] who? ref0763264.17e5 ref0763264.17e3 2017-11-14 09:45:28,108 [DEBUG] Grabbing contig between nodes ref0763264.17e5 & ref0763264.17e3 - [trim 0, 0] 2017-11-14 09:45:28,108 [DEBUG] contig 15169 to 15490 2017-11-14 09:45:28,109 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,109 [DEBUG] Moving from ref0763264.17e3 to ref0763264.18e5 (p=1) 2017-11-14 09:45:28,109 [DEBUG] unimproved gap 2017-11-14 09:45:28,109 [DEBUG] Moving from ref0763264.18e5 to ref0763264e3 (p=1) 2017-11-14 09:45:28,109 [DEBUG] contig 2017-11-14 09:45:28,109 [DEBUG] who? ref0763264.18e5 ref0763264e3 2017-11-14 09:45:28,109 [DEBUG] Grabbing contig between nodes ref0763264.18e5 & ref0763264e3 - [trim 0, 0] 2017-11-14 09:45:28,109 [DEBUG] contig 15723 to 15801 2017-11-14 09:45:28,109 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,109 [DEBUG] Contig 51 2017-11-14 09:45:28,112 [DEBUG] Moving from ref0740265e3 to ref0740265.18e5 (p=1) 2017-11-14 09:45:28,112 [DEBUG] contig 2017-11-14 09:45:28,112 [DEBUG] who? ref0740265.18e5 ref0740265e3 2017-11-14 09:45:28,112 [DEBUG] Grabbing contig between nodes ref0740265.18e5 & ref0740265e3 - [trim 0, 0] 2017-11-14 09:45:28,112 [DEBUG] contig 24594 to 24809 2017-11-14 09:45:28,112 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,112 [DEBUG] Moving from ref0740265.18e5 to ref0740265.17e3 (p=1) 2017-11-14 09:45:28,112 [DEBUG] unimproved gap 2017-11-14 09:45:28,112 [DEBUG] Moving from ref0740265.17e3 to ref0740265.17e5 (p=1) 2017-11-14 09:45:28,112 [DEBUG] contig 2017-11-14 09:45:28,112 [DEBUG] who? ref0740265.17e5 ref0740265.17e3 2017-11-14 09:45:28,112 [DEBUG] Grabbing contig between nodes ref0740265.17e5 & ref0740265.17e3 - [trim 0, 0] 2017-11-14 09:45:28,112 [DEBUG] contig 23371 to 24340 2017-11-14 09:45:28,113 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,113 [DEBUG] Moving from ref0740265.17e5 to ref0740265.16e3 (p=1) 2017-11-14 09:45:28,113 [DEBUG] unimproved gap 2017-11-14 09:45:28,113 [DEBUG] Moving from ref0740265.16e3 to ref0740265.16e5 (p=1) 2017-11-14 09:45:28,113 [DEBUG] contig 2017-11-14 09:45:28,113 [DEBUG] who? ref0740265.16e5 ref0740265.16e3 2017-11-14 09:45:28,113 [DEBUG] Grabbing contig between nodes ref0740265.16e5 & ref0740265.16e3 - [trim 0, 0] 2017-11-14 09:45:28,113 [DEBUG] contig 22763 to 23086 2017-11-14 09:45:28,113 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,113 [DEBUG] Moving from ref0740265.16e5 to ref0740265.15e3 (p=1) 2017-11-14 09:45:28,113 [DEBUG] unimproved gap 2017-11-14 09:45:28,113 [DEBUG] Moving from ref0740265.15e3 to ref0740265.15e5 (p=1) 2017-11-14 09:45:28,113 [DEBUG] contig 2017-11-14 09:45:28,113 [DEBUG] who? ref0740265.15e5 ref0740265.15e3 2017-11-14 09:45:28,114 [DEBUG] Grabbing contig between nodes ref0740265.15e5 & ref0740265.15e3 - [trim 0, 0] 2017-11-14 09:45:28,114 [DEBUG] contig 21302 to 22615 2017-11-14 09:45:28,114 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,114 [DEBUG] Moving from ref0740265.15e5 to ref0740265.14e3 (p=1) 2017-11-14 09:45:28,114 [DEBUG] unimproved gap 2017-11-14 09:45:28,114 [DEBUG] Moving from ref0740265.14e3 to ref0740265.14e5 (p=1) 2017-11-14 09:45:28,114 [DEBUG] contig 2017-11-14 09:45:28,114 [DEBUG] who? ref0740265.14e5 ref0740265.14e3 2017-11-14 09:45:28,114 [DEBUG] Grabbing contig between nodes ref0740265.14e5 & ref0740265.14e3 - [trim 0, 0] 2017-11-14 09:45:28,114 [DEBUG] contig 21048 to 21146 2017-11-14 09:45:28,114 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,114 [DEBUG] Moving from ref0740265.14e5 to ref0740265.13e3 (p=1) 2017-11-14 09:45:28,114 [DEBUG] unimproved gap 2017-11-14 09:45:28,115 [DEBUG] Moving from ref0740265.13e3 to ref0740265.13e5 (p=1) 2017-11-14 09:45:28,115 [DEBUG] contig 2017-11-14 09:45:28,115 [DEBUG] who? ref0740265.13e5 ref0740265.13e3 2017-11-14 09:45:28,115 [DEBUG] Grabbing contig between nodes ref0740265.13e5 & ref0740265.13e3 - [trim 0, 0] 2017-11-14 09:45:28,115 [DEBUG] contig 15622 to 20755 2017-11-14 09:45:28,115 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,115 [DEBUG] Moving from ref0740265.13e5 to ref0740265.12e3 (p=1) 2017-11-14 09:45:28,115 [DEBUG] unimproved gap 2017-11-14 09:45:28,115 [DEBUG] Moving from ref0740265.12e3 to ref0740265.12e5 (p=1) 2017-11-14 09:45:28,115 [DEBUG] contig 2017-11-14 09:45:28,115 [DEBUG] who? ref0740265.12e5 ref0740265.12e3 2017-11-14 09:45:28,115 [DEBUG] Grabbing contig between nodes ref0740265.12e5 & ref0740265.12e3 - [trim 0, 0] 2017-11-14 09:45:28,115 [DEBUG] contig 13265 to 15259 2017-11-14 09:45:28,115 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,116 [DEBUG] Moving from ref0740265.12e5 to ref0740265.11e3 (p=1) 2017-11-14 09:45:28,116 [DEBUG] unimproved gap 2017-11-14 09:45:28,116 [DEBUG] Moving from ref0740265.11e3 to ref0740265.11e5 (p=1) 2017-11-14 09:45:28,116 [DEBUG] contig 2017-11-14 09:45:28,116 [DEBUG] who? ref0740265.11e5 ref0740265.11e3 2017-11-14 09:45:28,116 [DEBUG] Grabbing contig between nodes ref0740265.11e5 & ref0740265.11e3 - [trim 0, 0] 2017-11-14 09:45:28,116 [DEBUG] contig 13012 to 13124 2017-11-14 09:45:28,116 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,116 [DEBUG] Moving from ref0740265.11e5 to ref0740265.10e3 (p=1) 2017-11-14 09:45:28,116 [DEBUG] unimproved gap 2017-11-14 09:45:28,116 [DEBUG] Moving from ref0740265.10e3 to ref0740265.10e5 (p=1) 2017-11-14 09:45:28,116 [DEBUG] contig 2017-11-14 09:45:28,116 [DEBUG] who? ref0740265.10e5 ref0740265.10e3 2017-11-14 09:45:28,117 [DEBUG] Grabbing contig between nodes ref0740265.10e5 & ref0740265.10e3 - [trim 0, 0] 2017-11-14 09:45:28,117 [DEBUG] contig 11706 to 12804 2017-11-14 09:45:28,117 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,117 [DEBUG] Moving from ref0740265.10e5 to ref0740265.9e3 (p=1) 2017-11-14 09:45:28,117 [DEBUG] unimproved gap 2017-11-14 09:45:28,117 [DEBUG] Moving from ref0740265.9e3 to ref0740265.9e5 (p=1) 2017-11-14 09:45:28,117 [DEBUG] contig 2017-11-14 09:45:28,117 [DEBUG] who? ref0740265.9e5 ref0740265.9e3 2017-11-14 09:45:28,117 [DEBUG] Grabbing contig between nodes ref0740265.9e5 & ref0740265.9e3 - [trim 0, 0] 2017-11-14 09:45:28,117 [DEBUG] contig 10100 to 11404 2017-11-14 09:45:28,117 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,117 [DEBUG] Moving from ref0740265.9e5 to ref0740265.8e3 (p=1) 2017-11-14 09:45:28,117 [DEBUG] unimproved gap 2017-11-14 09:45:28,118 [DEBUG] Moving from ref0740265.8e3 to ref0740265.8e5 (p=1) 2017-11-14 09:45:28,118 [DEBUG] contig 2017-11-14 09:45:28,118 [DEBUG] who? ref0740265.8e5 ref0740265.8e3 2017-11-14 09:45:28,118 [DEBUG] Grabbing contig between nodes ref0740265.8e5 & ref0740265.8e3 - [trim 0, 0] 2017-11-14 09:45:28,118 [DEBUG] contig 6831 to 10024 2017-11-14 09:45:28,118 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,118 [DEBUG] Moving from ref0740265.8e5 to ref0740265.7e3 (p=1) 2017-11-14 09:45:28,118 [DEBUG] unimproved gap 2017-11-14 09:45:28,118 [DEBUG] Moving from ref0740265.7e3 to ref0740265.7e5 (p=1) 2017-11-14 09:45:28,118 [DEBUG] contig 2017-11-14 09:45:28,118 [DEBUG] who? ref0740265.7e5 ref0740265.7e3 2017-11-14 09:45:28,118 [DEBUG] Grabbing contig between nodes ref0740265.7e5 & ref0740265.7e3 - [trim 0, 0] 2017-11-14 09:45:28,119 [DEBUG] contig 6013 to 6709 2017-11-14 09:45:28,119 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,119 [DEBUG] Moving from ref0740265.7e5 to ref0740265.6e3 (p=1) 2017-11-14 09:45:28,119 [DEBUG] unimproved gap 2017-11-14 09:45:28,119 [DEBUG] Moving from ref0740265.6e3 to ref0740265.6e5 (p=1) 2017-11-14 09:45:28,119 [DEBUG] contig 2017-11-14 09:45:28,119 [DEBUG] who? ref0740265.6e5 ref0740265.6e3 2017-11-14 09:45:28,119 [DEBUG] Grabbing contig between nodes ref0740265.6e5 & ref0740265.6e3 - [trim 0, 0] 2017-11-14 09:45:28,119 [DEBUG] contig 4812 to 5438 2017-11-14 09:45:28,119 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,119 [DEBUG] Moving from ref0740265.6e5 to ref0740265.5e3 (p=1) 2017-11-14 09:45:28,119 [DEBUG] unimproved gap 2017-11-14 09:45:28,119 [DEBUG] Moving from ref0740265.5e3 to ref0740265.5e5 (p=1) 2017-11-14 09:45:28,119 [DEBUG] contig 2017-11-14 09:45:28,120 [DEBUG] who? ref0740265.5e5 ref0740265.5e3 2017-11-14 09:45:28,120 [DEBUG] Grabbing contig between nodes ref0740265.5e5 & ref0740265.5e3 - [trim 0, 0] 2017-11-14 09:45:28,120 [DEBUG] contig 4490 to 4518 2017-11-14 09:45:28,120 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,120 [DEBUG] Moving from ref0740265.5e5 to ref0740265.4e3 (p=1) 2017-11-14 09:45:28,120 [DEBUG] unimproved gap 2017-11-14 09:45:28,120 [DEBUG] Moving from ref0740265.4e3 to ref0740265.4e5 (p=1) 2017-11-14 09:45:28,120 [DEBUG] contig 2017-11-14 09:45:28,120 [DEBUG] who? ref0740265.4e5 ref0740265.4e3 2017-11-14 09:45:28,120 [DEBUG] Grabbing contig between nodes ref0740265.4e5 & ref0740265.4e3 - [trim 0, 0] 2017-11-14 09:45:28,120 [DEBUG] contig 1496 to 4314 2017-11-14 09:45:28,120 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,120 [DEBUG] Moving from ref0740265.4e5 to ref0740265.3e3 (p=1) 2017-11-14 09:45:28,121 [DEBUG] unimproved gap 2017-11-14 09:45:28,121 [DEBUG] Moving from ref0740265.3e3 to ref0740265.3e5 (p=1) 2017-11-14 09:45:28,121 [DEBUG] contig 2017-11-14 09:45:28,121 [DEBUG] who? ref0740265.3e5 ref0740265.3e3 2017-11-14 09:45:28,121 [DEBUG] Grabbing contig between nodes ref0740265.3e5 & ref0740265.3e3 - [trim 0, 0] 2017-11-14 09:45:28,121 [DEBUG] contig 1004 to 1427 2017-11-14 09:45:28,121 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,121 [DEBUG] Moving from ref0740265.3e5 to ref0740265.2e3 (p=1) 2017-11-14 09:45:28,121 [DEBUG] unimproved gap 2017-11-14 09:45:28,121 [DEBUG] Moving from ref0740265.2e3 to ref0740265.2e5 (p=1) 2017-11-14 09:45:28,121 [DEBUG] contig 2017-11-14 09:45:28,121 [DEBUG] who? ref0740265.2e5 ref0740265.2e3 2017-11-14 09:45:28,121 [DEBUG] Grabbing contig between nodes ref0740265.2e5 & ref0740265.2e3 - [trim 0, 0] 2017-11-14 09:45:28,122 [DEBUG] contig 537 to 931 2017-11-14 09:45:28,122 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,122 [DEBUG] Moving from ref0740265.2e5 to ref0740265.1e3 (p=1) 2017-11-14 09:45:28,122 [DEBUG] unimproved gap 2017-11-14 09:45:28,122 [DEBUG] Moving from ref0740265.1e3 to ref0740265.1e5 (p=1) 2017-11-14 09:45:28,122 [DEBUG] contig 2017-11-14 09:45:28,122 [DEBUG] who? ref0740265.1e5 ref0740265.1e3 2017-11-14 09:45:28,122 [DEBUG] Grabbing contig between nodes ref0740265.1e5 & ref0740265.1e3 - [trim 0, 0] 2017-11-14 09:45:28,122 [DEBUG] contig 303 to 355 2017-11-14 09:45:28,122 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,122 [DEBUG] Moving from ref0740265.1e5 to ref0740265.0e3 (p=1) 2017-11-14 09:45:28,122 [DEBUG] unimproved gap 2017-11-14 09:45:28,122 [DEBUG] Moving from ref0740265.0e3 to ref0740265e5 (p=1) 2017-11-14 09:45:28,123 [DEBUG] contig 2017-11-14 09:45:28,123 [DEBUG] who? ref0740265e5 ref0740265.0e3 2017-11-14 09:45:28,123 [DEBUG] Grabbing contig between nodes ref0740265e5 & ref0740265.0e3 - [trim 0, 0] 2017-11-14 09:45:28,123 [DEBUG] contig 0 to 155 2017-11-14 09:45:28,123 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,123 [DEBUG] FirstFlipping 51 2017-11-14 09:45:28,123 [DEBUG] Contig 52 2017-11-14 09:45:28,125 [DEBUG] Moving from ref0603153e5 to ref0603153.0e3 (p=1) 2017-11-14 09:45:28,126 [DEBUG] contig 2017-11-14 09:45:28,126 [DEBUG] who? ref0603153e5 ref0603153.0e3 2017-11-14 09:45:28,126 [DEBUG] Grabbing contig between nodes ref0603153e5 & ref0603153.0e3 - [trim 0, 0] 2017-11-14 09:45:28,126 [DEBUG] contig 0 to 6180 2017-11-14 09:45:28,126 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,126 [DEBUG] Moving from ref0603153.0e3 to ref0603153.1e5 (p=1) 2017-11-14 09:45:28,126 [DEBUG] unimproved gap 2017-11-14 09:45:28,126 [DEBUG] Moving from ref0603153.1e5 to ref0603153.1e3 (p=1) 2017-11-14 09:45:28,126 [DEBUG] contig 2017-11-14 09:45:28,126 [DEBUG] who? ref0603153.1e5 ref0603153.1e3 2017-11-14 09:45:28,126 [DEBUG] Grabbing contig between nodes ref0603153.1e5 & ref0603153.1e3 - [trim 0, 0] 2017-11-14 09:45:28,126 [DEBUG] contig 6339 to 7154 2017-11-14 09:45:28,126 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,127 [DEBUG] Moving from ref0603153.1e3 to ref0603153.2e5 (p=1) 2017-11-14 09:45:28,127 [DEBUG] unimproved gap 2017-11-14 09:45:28,127 [DEBUG] Moving from ref0603153.2e5 to ref0603153.2e3 (p=1) 2017-11-14 09:45:28,127 [DEBUG] contig 2017-11-14 09:45:28,127 [DEBUG] who? ref0603153.2e5 ref0603153.2e3 2017-11-14 09:45:28,127 [DEBUG] Grabbing contig between nodes ref0603153.2e5 & ref0603153.2e3 - [trim 0, 0] 2017-11-14 09:45:28,127 [DEBUG] contig 7207 to 9125 2017-11-14 09:45:28,127 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,127 [DEBUG] Moving from ref0603153.2e3 to ref0603153.3e5 (p=1) 2017-11-14 09:45:28,127 [DEBUG] unimproved gap 2017-11-14 09:45:28,127 [DEBUG] Moving from ref0603153.3e5 to ref0603153.3e3 (p=1) 2017-11-14 09:45:28,127 [DEBUG] contig 2017-11-14 09:45:28,127 [DEBUG] who? ref0603153.3e5 ref0603153.3e3 2017-11-14 09:45:28,128 [DEBUG] Grabbing contig between nodes ref0603153.3e5 & ref0603153.3e3 - [trim 0, 0] 2017-11-14 09:45:28,128 [DEBUG] contig 9274 to 15054 2017-11-14 09:45:28,128 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,128 [DEBUG] Moving from ref0603153.3e3 to ref0603153.4e5 (p=1) 2017-11-14 09:45:28,128 [DEBUG] unimproved gap 2017-11-14 09:45:28,128 [DEBUG] Moving from ref0603153.4e5 to ref0603153.4e3 (p=1) 2017-11-14 09:45:28,128 [DEBUG] contig 2017-11-14 09:45:28,128 [DEBUG] who? ref0603153.4e5 ref0603153.4e3 2017-11-14 09:45:28,128 [DEBUG] Grabbing contig between nodes ref0603153.4e5 & ref0603153.4e3 - [trim 0, 0] 2017-11-14 09:45:28,128 [DEBUG] contig 15187 to 16242 2017-11-14 09:45:28,128 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,128 [DEBUG] Moving from ref0603153.4e3 to ref0603153.5e5 (p=1) 2017-11-14 09:45:28,128 [DEBUG] unimproved gap 2017-11-14 09:45:28,129 [DEBUG] Moving from ref0603153.5e5 to ref0603153.5e3 (p=1) 2017-11-14 09:45:28,129 [DEBUG] contig 2017-11-14 09:45:28,129 [DEBUG] who? ref0603153.5e5 ref0603153.5e3 2017-11-14 09:45:28,129 [DEBUG] Grabbing contig between nodes ref0603153.5e5 & ref0603153.5e3 - [trim 0, 0] 2017-11-14 09:45:28,129 [DEBUG] contig 16568 to 16721 2017-11-14 09:45:28,129 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,129 [DEBUG] Moving from ref0603153.5e3 to ref0603153.6e5 (p=1) 2017-11-14 09:45:28,129 [DEBUG] unimproved gap 2017-11-14 09:45:28,129 [DEBUG] Moving from ref0603153.6e5 to ref0603153.6e3 (p=1) 2017-11-14 09:45:28,129 [DEBUG] contig 2017-11-14 09:45:28,129 [DEBUG] who? ref0603153.6e5 ref0603153.6e3 2017-11-14 09:45:28,129 [DEBUG] Grabbing contig between nodes ref0603153.6e5 & ref0603153.6e3 - [trim 0, 0] 2017-11-14 09:45:28,129 [DEBUG] contig 16819 to 17475 2017-11-14 09:45:28,129 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,130 [DEBUG] Moving from ref0603153.6e3 to ref0603153.7e5 (p=1) 2017-11-14 09:45:28,130 [DEBUG] unimproved gap 2017-11-14 09:45:28,130 [DEBUG] Moving from ref0603153.7e5 to ref0603153.7e3 (p=1) 2017-11-14 09:45:28,130 [DEBUG] contig 2017-11-14 09:45:28,130 [DEBUG] who? ref0603153.7e5 ref0603153.7e3 2017-11-14 09:45:28,130 [DEBUG] Grabbing contig between nodes ref0603153.7e5 & ref0603153.7e3 - [trim 0, 0] 2017-11-14 09:45:28,130 [DEBUG] contig 17881 to 17924 2017-11-14 09:45:28,130 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,130 [DEBUG] Moving from ref0603153.7e3 to ref0603153.8e5 (p=1) 2017-11-14 09:45:28,130 [DEBUG] unimproved gap 2017-11-14 09:45:28,130 [DEBUG] Moving from ref0603153.8e5 to ref0603153.8e3 (p=1) 2017-11-14 09:45:28,130 [DEBUG] contig 2017-11-14 09:45:28,130 [DEBUG] who? ref0603153.8e5 ref0603153.8e3 2017-11-14 09:45:28,131 [DEBUG] Grabbing contig between nodes ref0603153.8e5 & ref0603153.8e3 - [trim 0, 0] 2017-11-14 09:45:28,131 [DEBUG] contig 18096 to 18237 2017-11-14 09:45:28,131 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,131 [DEBUG] Moving from ref0603153.8e3 to ref0603153.9e5 (p=1) 2017-11-14 09:45:28,131 [DEBUG] unimproved gap 2017-11-14 09:45:28,131 [DEBUG] Moving from ref0603153.9e5 to ref0603153.9e3 (p=1) 2017-11-14 09:45:28,131 [DEBUG] contig 2017-11-14 09:45:28,131 [DEBUG] who? ref0603153.9e5 ref0603153.9e3 2017-11-14 09:45:28,131 [DEBUG] Grabbing contig between nodes ref0603153.9e5 & ref0603153.9e3 - [trim 0, 0] 2017-11-14 09:45:28,131 [DEBUG] contig 18772 to 19475 2017-11-14 09:45:28,131 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,131 [DEBUG] Moving from ref0603153.9e3 to ref0603153.10e5 (p=1) 2017-11-14 09:45:28,131 [DEBUG] unimproved gap 2017-11-14 09:45:28,132 [DEBUG] Moving from ref0603153.10e5 to ref0603153.10e3 (p=1) 2017-11-14 09:45:28,132 [DEBUG] contig 2017-11-14 09:45:28,132 [DEBUG] who? ref0603153.10e5 ref0603153.10e3 2017-11-14 09:45:28,132 [DEBUG] Grabbing contig between nodes ref0603153.10e5 & ref0603153.10e3 - [trim 0, 0] 2017-11-14 09:45:28,132 [DEBUG] contig 19559 to 21497 2017-11-14 09:45:28,132 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,132 [DEBUG] Moving from ref0603153.10e3 to ref0603153.11e5 (p=1) 2017-11-14 09:45:28,132 [DEBUG] unimproved gap 2017-11-14 09:45:28,132 [DEBUG] Moving from ref0603153.11e5 to ref0603153.11e3 (p=1) 2017-11-14 09:45:28,132 [DEBUG] contig 2017-11-14 09:45:28,132 [DEBUG] who? ref0603153.11e5 ref0603153.11e3 2017-11-14 09:45:28,132 [DEBUG] Grabbing contig between nodes ref0603153.11e5 & ref0603153.11e3 - [trim 0, 0] 2017-11-14 09:45:28,132 [DEBUG] contig 21814 to 21839 2017-11-14 09:45:28,133 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,133 [DEBUG] Moving from ref0603153.11e3 to ref0603153.12e5 (p=1) 2017-11-14 09:45:28,133 [DEBUG] unimproved gap 2017-11-14 09:45:28,133 [DEBUG] Moving from ref0603153.12e5 to ref0603153.12e3 (p=1) 2017-11-14 09:45:28,133 [DEBUG] contig 2017-11-14 09:45:28,133 [DEBUG] who? ref0603153.12e5 ref0603153.12e3 2017-11-14 09:45:28,133 [DEBUG] Grabbing contig between nodes ref0603153.12e5 & ref0603153.12e3 - [trim 0, 0] 2017-11-14 09:45:28,133 [DEBUG] contig 21971 to 22998 2017-11-14 09:45:28,133 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,133 [DEBUG] Moving from ref0603153.12e3 to ref0603153.13e5 (p=1) 2017-11-14 09:45:28,133 [DEBUG] unimproved gap 2017-11-14 09:45:28,133 [DEBUG] Moving from ref0603153.13e5 to ref0603153.13e3 (p=1) 2017-11-14 09:45:28,133 [DEBUG] contig 2017-11-14 09:45:28,134 [DEBUG] who? ref0603153.13e5 ref0603153.13e3 2017-11-14 09:45:28,134 [DEBUG] Grabbing contig between nodes ref0603153.13e5 & ref0603153.13e3 - [trim 0, 0] 2017-11-14 09:45:28,134 [DEBUG] contig 23125 to 24105 2017-11-14 09:45:28,134 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,134 [DEBUG] Moving from ref0603153.13e3 to ref0603153.14e5 (p=1) 2017-11-14 09:45:28,134 [DEBUG] unimproved gap 2017-11-14 09:45:28,134 [DEBUG] Moving from ref0603153.14e5 to ref0603153.14e3 (p=1) 2017-11-14 09:45:28,134 [DEBUG] contig 2017-11-14 09:45:28,134 [DEBUG] who? ref0603153.14e5 ref0603153.14e3 2017-11-14 09:45:28,134 [DEBUG] Grabbing contig between nodes ref0603153.14e5 & ref0603153.14e3 - [trim 0, 0] 2017-11-14 09:45:28,134 [DEBUG] contig 24347 to 24387 2017-11-14 09:45:28,134 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,134 [DEBUG] Moving from ref0603153.14e3 to ref0603153.15e5 (p=1) 2017-11-14 09:45:28,134 [DEBUG] unimproved gap 2017-11-14 09:45:28,135 [DEBUG] Moving from ref0603153.15e5 to ref0603153.15e3 (p=1) 2017-11-14 09:45:28,135 [DEBUG] contig 2017-11-14 09:45:28,135 [DEBUG] who? ref0603153.15e5 ref0603153.15e3 2017-11-14 09:45:28,135 [DEBUG] Grabbing contig between nodes ref0603153.15e5 & ref0603153.15e3 - [trim 0, 0] 2017-11-14 09:45:28,135 [DEBUG] contig 24976 to 25246 2017-11-14 09:45:28,135 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,135 [DEBUG] Moving from ref0603153.15e3 to ref0603153.16e5 (p=1) 2017-11-14 09:45:28,135 [DEBUG] unimproved gap 2017-11-14 09:45:28,135 [DEBUG] Moving from ref0603153.16e5 to ref0603153.16e3 (p=1) 2017-11-14 09:45:28,135 [DEBUG] contig 2017-11-14 09:45:28,135 [DEBUG] who? ref0603153.16e5 ref0603153.16e3 2017-11-14 09:45:28,135 [DEBUG] Grabbing contig between nodes ref0603153.16e5 & ref0603153.16e3 - [trim 0, 0] 2017-11-14 09:45:28,135 [DEBUG] contig 25393 to 25583 2017-11-14 09:45:28,136 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,136 [DEBUG] Moving from ref0603153.16e3 to ref0603153.17e5 (p=1) 2017-11-14 09:45:28,136 [DEBUG] unimproved gap 2017-11-14 09:45:28,136 [DEBUG] Moving from ref0603153.17e5 to ref0603153.17e3 (p=1) 2017-11-14 09:45:28,136 [DEBUG] contig 2017-11-14 09:45:28,136 [DEBUG] who? ref0603153.17e5 ref0603153.17e3 2017-11-14 09:45:28,136 [DEBUG] Grabbing contig between nodes ref0603153.17e5 & ref0603153.17e3 - [trim 0, 0] 2017-11-14 09:45:28,136 [DEBUG] contig 25726 to 26171 2017-11-14 09:45:28,136 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,136 [DEBUG] Moving from ref0603153.17e3 to ref0603153.18e5 (p=1) 2017-11-14 09:45:28,136 [DEBUG] unimproved gap 2017-11-14 09:45:28,136 [DEBUG] Moving from ref0603153.18e5 to ref0603153e3 (p=1) 2017-11-14 09:45:28,136 [DEBUG] contig 2017-11-14 09:45:28,137 [DEBUG] who? ref0603153.18e5 ref0603153e3 2017-11-14 09:45:28,137 [DEBUG] Grabbing contig between nodes ref0603153.18e5 & ref0603153e3 - [trim 0, 0] 2017-11-14 09:45:28,137 [DEBUG] contig 26360 to 26529 2017-11-14 09:45:28,137 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,137 [DEBUG] Contig 53 2017-11-14 09:45:28,139 [DEBUG] Moving from ref0201798e5 to ref0201798.0e3 (p=1) 2017-11-14 09:45:28,139 [DEBUG] contig 2017-11-14 09:45:28,139 [DEBUG] who? ref0201798e5 ref0201798.0e3 2017-11-14 09:45:28,139 [DEBUG] Grabbing contig between nodes ref0201798e5 & ref0201798.0e3 - [trim 0, 0] 2017-11-14 09:45:28,139 [DEBUG] contig 0 to 93 2017-11-14 09:45:28,139 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,140 [DEBUG] Moving from ref0201798.0e3 to ref0201798.1e5 (p=1) 2017-11-14 09:45:28,140 [DEBUG] unimproved gap 2017-11-14 09:45:28,140 [DEBUG] Moving from ref0201798.1e5 to ref0201798.1e3 (p=1) 2017-11-14 09:45:28,140 [DEBUG] contig 2017-11-14 09:45:28,140 [DEBUG] who? ref0201798.1e5 ref0201798.1e3 2017-11-14 09:45:28,140 [DEBUG] Grabbing contig between nodes ref0201798.1e5 & ref0201798.1e3 - [trim 0, 0] 2017-11-14 09:45:28,140 [DEBUG] contig 352 to 488 2017-11-14 09:45:28,140 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,140 [DEBUG] Moving from ref0201798.1e3 to ref0201798.2e5 (p=1) 2017-11-14 09:45:28,140 [DEBUG] unimproved gap 2017-11-14 09:45:28,140 [DEBUG] Moving from ref0201798.2e5 to ref0201798.2e3 (p=1) 2017-11-14 09:45:28,140 [DEBUG] contig 2017-11-14 09:45:28,140 [DEBUG] who? ref0201798.2e5 ref0201798.2e3 2017-11-14 09:45:28,141 [DEBUG] Grabbing contig between nodes ref0201798.2e5 & ref0201798.2e3 - [trim 0, 0] 2017-11-14 09:45:28,141 [DEBUG] contig 758 to 834 2017-11-14 09:45:28,141 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,141 [DEBUG] Moving from ref0201798.2e3 to ref0201798.3e5 (p=1) 2017-11-14 09:45:28,141 [DEBUG] unimproved gap 2017-11-14 09:45:28,141 [DEBUG] Moving from ref0201798.3e5 to ref0201798.3e3 (p=1) 2017-11-14 09:45:28,141 [DEBUG] contig 2017-11-14 09:45:28,141 [DEBUG] who? ref0201798.3e5 ref0201798.3e3 2017-11-14 09:45:28,141 [DEBUG] Grabbing contig between nodes ref0201798.3e5 & ref0201798.3e3 - [trim 0, 0] 2017-11-14 09:45:28,141 [DEBUG] contig 999 to 1116 2017-11-14 09:45:28,141 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,141 [DEBUG] Moving from ref0201798.3e3 to ref0201798.4e5 (p=1) 2017-11-14 09:45:28,141 [DEBUG] unimproved gap 2017-11-14 09:45:28,142 [DEBUG] Moving from ref0201798.4e5 to ref0201798.4e3 (p=1) 2017-11-14 09:45:28,142 [DEBUG] contig 2017-11-14 09:45:28,142 [DEBUG] who? ref0201798.4e5 ref0201798.4e3 2017-11-14 09:45:28,142 [DEBUG] Grabbing contig between nodes ref0201798.4e5 & ref0201798.4e3 - [trim 0, 0] 2017-11-14 09:45:28,142 [DEBUG] contig 1223 to 1384 2017-11-14 09:45:28,142 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,142 [DEBUG] Moving from ref0201798.4e3 to ref0201798.5e5 (p=1) 2017-11-14 09:45:28,142 [DEBUG] unimproved gap 2017-11-14 09:45:28,142 [DEBUG] Moving from ref0201798.5e5 to ref0201798.5e3 (p=1) 2017-11-14 09:45:28,142 [DEBUG] contig 2017-11-14 09:45:28,142 [DEBUG] who? ref0201798.5e5 ref0201798.5e3 2017-11-14 09:45:28,142 [DEBUG] Grabbing contig between nodes ref0201798.5e5 & ref0201798.5e3 - [trim 0, 0] 2017-11-14 09:45:28,142 [DEBUG] contig 1630 to 1694 2017-11-14 09:45:28,143 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,143 [DEBUG] Moving from ref0201798.5e3 to ref0201798.6e5 (p=1) 2017-11-14 09:45:28,143 [DEBUG] unimproved gap 2017-11-14 09:45:28,143 [DEBUG] Moving from ref0201798.6e5 to ref0201798.6e3 (p=1) 2017-11-14 09:45:28,143 [DEBUG] contig 2017-11-14 09:45:28,143 [DEBUG] who? ref0201798.6e5 ref0201798.6e3 2017-11-14 09:45:28,143 [DEBUG] Grabbing contig between nodes ref0201798.6e5 & ref0201798.6e3 - [trim 0, 0] 2017-11-14 09:45:28,143 [DEBUG] contig 1973 to 2304 2017-11-14 09:45:28,143 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,143 [DEBUG] Moving from ref0201798.6e3 to ref0201798.7e5 (p=1) 2017-11-14 09:45:28,143 [DEBUG] unimproved gap 2017-11-14 09:45:28,143 [DEBUG] Moving from ref0201798.7e5 to ref0201798.7e3 (p=1) 2017-11-14 09:45:28,143 [DEBUG] contig 2017-11-14 09:45:28,143 [DEBUG] who? ref0201798.7e5 ref0201798.7e3 2017-11-14 09:45:28,144 [DEBUG] Grabbing contig between nodes ref0201798.7e5 & ref0201798.7e3 - [trim 0, 0] 2017-11-14 09:45:28,144 [DEBUG] contig 2696 to 3106 2017-11-14 09:45:28,144 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,144 [DEBUG] Moving from ref0201798.7e3 to ref0201798.8e5 (p=1) 2017-11-14 09:45:28,144 [DEBUG] unimproved gap 2017-11-14 09:45:28,144 [DEBUG] Moving from ref0201798.8e5 to ref0201798.8e3 (p=1) 2017-11-14 09:45:28,144 [DEBUG] contig 2017-11-14 09:45:28,144 [DEBUG] who? ref0201798.8e5 ref0201798.8e3 2017-11-14 09:45:28,144 [DEBUG] Grabbing contig between nodes ref0201798.8e5 & ref0201798.8e3 - [trim 0, 0] 2017-11-14 09:45:28,144 [DEBUG] contig 3243 to 3405 2017-11-14 09:45:28,144 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,144 [DEBUG] Moving from ref0201798.8e3 to ref0201798.9e5 (p=1) 2017-11-14 09:45:28,144 [DEBUG] unimproved gap 2017-11-14 09:45:28,145 [DEBUG] Moving from ref0201798.9e5 to ref0201798.9e3 (p=1) 2017-11-14 09:45:28,145 [DEBUG] contig 2017-11-14 09:45:28,145 [DEBUG] who? ref0201798.9e5 ref0201798.9e3 2017-11-14 09:45:28,145 [DEBUG] Grabbing contig between nodes ref0201798.9e5 & ref0201798.9e3 - [trim 0, 0] 2017-11-14 09:45:28,145 [DEBUG] contig 3619 to 3724 2017-11-14 09:45:28,145 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,145 [DEBUG] Moving from ref0201798.9e3 to ref0201798.10e5 (p=1) 2017-11-14 09:45:28,145 [DEBUG] unimproved gap 2017-11-14 09:45:28,145 [DEBUG] Moving from ref0201798.10e5 to ref0201798.10e3 (p=1) 2017-11-14 09:45:28,145 [DEBUG] contig 2017-11-14 09:45:28,145 [DEBUG] who? ref0201798.10e5 ref0201798.10e3 2017-11-14 09:45:28,145 [DEBUG] Grabbing contig between nodes ref0201798.10e5 & ref0201798.10e3 - [trim 0, 0] 2017-11-14 09:45:28,145 [DEBUG] contig 3995 to 4194 2017-11-14 09:45:28,146 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,146 [DEBUG] Moving from ref0201798.10e3 to ref0201798.11e5 (p=1) 2017-11-14 09:45:28,146 [DEBUG] unimproved gap 2017-11-14 09:45:28,146 [DEBUG] Moving from ref0201798.11e5 to ref0201798.11e3 (p=1) 2017-11-14 09:45:28,146 [DEBUG] contig 2017-11-14 09:45:28,146 [DEBUG] who? ref0201798.11e5 ref0201798.11e3 2017-11-14 09:45:28,146 [DEBUG] Grabbing contig between nodes ref0201798.11e5 & ref0201798.11e3 - [trim 0, 0] 2017-11-14 09:45:28,146 [DEBUG] contig 4414 to 4485 2017-11-14 09:45:28,146 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,146 [DEBUG] Moving from ref0201798.11e3 to ref0201798.12e5 (p=1) 2017-11-14 09:45:28,146 [DEBUG] unimproved gap 2017-11-14 09:45:28,146 [DEBUG] Moving from ref0201798.12e5 to ref0201798.12e3 (p=1) 2017-11-14 09:45:28,146 [DEBUG] contig 2017-11-14 09:45:28,147 [DEBUG] who? ref0201798.12e5 ref0201798.12e3 2017-11-14 09:45:28,147 [DEBUG] Grabbing contig between nodes ref0201798.12e5 & ref0201798.12e3 - [trim 0, 0] 2017-11-14 09:45:28,147 [DEBUG] contig 4688 to 5388 2017-11-14 09:45:28,147 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,147 [DEBUG] Moving from ref0201798.12e3 to ref0201798.13e5 (p=1) 2017-11-14 09:45:28,147 [DEBUG] unimproved gap 2017-11-14 09:45:28,147 [DEBUG] Moving from ref0201798.13e5 to ref0201798.13e3 (p=1) 2017-11-14 09:45:28,147 [DEBUG] contig 2017-11-14 09:45:28,147 [DEBUG] who? ref0201798.13e5 ref0201798.13e3 2017-11-14 09:45:28,147 [DEBUG] Grabbing contig between nodes ref0201798.13e5 & ref0201798.13e3 - [trim 0, 0] 2017-11-14 09:45:28,147 [DEBUG] contig 5644 to 8830 2017-11-14 09:45:28,147 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,147 [DEBUG] Moving from ref0201798.13e3 to ref0201798.14e5 (p=1) 2017-11-14 09:45:28,148 [DEBUG] unimproved gap 2017-11-14 09:45:28,148 [DEBUG] Moving from ref0201798.14e5 to ref0201798.14e3 (p=1) 2017-11-14 09:45:28,148 [DEBUG] contig 2017-11-14 09:45:28,148 [DEBUG] who? ref0201798.14e5 ref0201798.14e3 2017-11-14 09:45:28,148 [DEBUG] Grabbing contig between nodes ref0201798.14e5 & ref0201798.14e3 - [trim 0, 0] 2017-11-14 09:45:28,148 [DEBUG] contig 9156 to 9194 2017-11-14 09:45:28,148 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,148 [DEBUG] Moving from ref0201798.14e3 to ref0201798.15e5 (p=1) 2017-11-14 09:45:28,148 [DEBUG] unimproved gap 2017-11-14 09:45:28,148 [DEBUG] Moving from ref0201798.15e5 to ref0201798.15e3 (p=1) 2017-11-14 09:45:28,148 [DEBUG] contig 2017-11-14 09:45:28,148 [DEBUG] who? ref0201798.15e5 ref0201798.15e3 2017-11-14 09:45:28,148 [DEBUG] Grabbing contig between nodes ref0201798.15e5 & ref0201798.15e3 - [trim 0, 0] 2017-11-14 09:45:28,149 [DEBUG] contig 9472 to 9629 2017-11-14 09:45:28,149 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,149 [DEBUG] Moving from ref0201798.15e3 to ref0201798.16e5 (p=1) 2017-11-14 09:45:28,149 [DEBUG] unimproved gap 2017-11-14 09:45:28,149 [DEBUG] Moving from ref0201798.16e5 to ref0201798.16e3 (p=1) 2017-11-14 09:45:28,149 [DEBUG] contig 2017-11-14 09:45:28,149 [DEBUG] who? ref0201798.16e5 ref0201798.16e3 2017-11-14 09:45:28,149 [DEBUG] Grabbing contig between nodes ref0201798.16e5 & ref0201798.16e3 - [trim 0, 0] 2017-11-14 09:45:28,149 [DEBUG] contig 9810 to 10014 2017-11-14 09:45:28,149 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,149 [DEBUG] Moving from ref0201798.16e3 to ref0201798.17e5 (p=1) 2017-11-14 09:45:28,149 [DEBUG] unimproved gap 2017-11-14 09:45:28,149 [DEBUG] Moving from ref0201798.17e5 to ref0201798.17e3 (p=1) 2017-11-14 09:45:28,149 [DEBUG] contig 2017-11-14 09:45:28,150 [DEBUG] who? ref0201798.17e5 ref0201798.17e3 2017-11-14 09:45:28,150 [DEBUG] Grabbing contig between nodes ref0201798.17e5 & ref0201798.17e3 - [trim 0, 0] 2017-11-14 09:45:28,150 [DEBUG] contig 10214 to 10371 2017-11-14 09:45:28,150 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,150 [DEBUG] Moving from ref0201798.17e3 to ref0201798.18e5 (p=1) 2017-11-14 09:45:28,150 [DEBUG] unimproved gap 2017-11-14 09:45:28,150 [DEBUG] Moving from ref0201798.18e5 to ref0201798e3 (p=1) 2017-11-14 09:45:28,150 [DEBUG] contig 2017-11-14 09:45:28,150 [DEBUG] who? ref0201798.18e5 ref0201798e3 2017-11-14 09:45:28,150 [DEBUG] Grabbing contig between nodes ref0201798.18e5 & ref0201798e3 - [trim 0, 0] 2017-11-14 09:45:28,150 [DEBUG] contig 10817 to 13420 2017-11-14 09:45:28,150 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,151 [DEBUG] Contig 54 2017-11-14 09:45:28,153 [DEBUG] Moving from ref0318241e3 to ref0318241.18e5 (p=1) 2017-11-14 09:45:28,153 [DEBUG] contig 2017-11-14 09:45:28,153 [DEBUG] who? ref0318241.18e5 ref0318241e3 2017-11-14 09:45:28,153 [DEBUG] Grabbing contig between nodes ref0318241.18e5 & ref0318241e3 - [trim 0, 0] 2017-11-14 09:45:28,153 [DEBUG] contig 16963 to 17000 2017-11-14 09:45:28,153 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,153 [DEBUG] Moving from ref0318241.18e5 to ref0318241.17e3 (p=1) 2017-11-14 09:45:28,153 [DEBUG] unimproved gap 2017-11-14 09:45:28,153 [DEBUG] Moving from ref0318241.17e3 to ref0318241.17e5 (p=1) 2017-11-14 09:45:28,153 [DEBUG] contig 2017-11-14 09:45:28,153 [DEBUG] who? ref0318241.17e5 ref0318241.17e3 2017-11-14 09:45:28,154 [DEBUG] Grabbing contig between nodes ref0318241.17e5 & ref0318241.17e3 - [trim 0, 0] 2017-11-14 09:45:28,154 [DEBUG] contig 16490 to 16626 2017-11-14 09:45:28,154 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,154 [DEBUG] Moving from ref0318241.17e5 to ref0318241.16e3 (p=1) 2017-11-14 09:45:28,154 [DEBUG] unimproved gap 2017-11-14 09:45:28,154 [DEBUG] Moving from ref0318241.16e3 to ref0318241.16e5 (p=1) 2017-11-14 09:45:28,154 [DEBUG] contig 2017-11-14 09:45:28,154 [DEBUG] who? ref0318241.16e5 ref0318241.16e3 2017-11-14 09:45:28,154 [DEBUG] Grabbing contig between nodes ref0318241.16e5 & ref0318241.16e3 - [trim 0, 0] 2017-11-14 09:45:28,154 [DEBUG] contig 15666 to 16342 2017-11-14 09:45:28,154 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,154 [DEBUG] Moving from ref0318241.16e5 to ref0318241.15e3 (p=1) 2017-11-14 09:45:28,154 [DEBUG] unimproved gap 2017-11-14 09:45:28,155 [DEBUG] Moving from ref0318241.15e3 to ref0318241.15e5 (p=1) 2017-11-14 09:45:28,155 [DEBUG] contig 2017-11-14 09:45:28,155 [DEBUG] who? ref0318241.15e5 ref0318241.15e3 2017-11-14 09:45:28,155 [DEBUG] Grabbing contig between nodes ref0318241.15e5 & ref0318241.15e3 - [trim 0, 0] 2017-11-14 09:45:28,155 [DEBUG] contig 15060 to 15422 2017-11-14 09:45:28,155 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,155 [DEBUG] Moving from ref0318241.15e5 to ref0318241.14e3 (p=1) 2017-11-14 09:45:28,155 [DEBUG] unimproved gap 2017-11-14 09:45:28,155 [DEBUG] Moving from ref0318241.14e3 to ref0318241.14e5 (p=1) 2017-11-14 09:45:28,155 [DEBUG] contig 2017-11-14 09:45:28,155 [DEBUG] who? ref0318241.14e5 ref0318241.14e3 2017-11-14 09:45:28,155 [DEBUG] Grabbing contig between nodes ref0318241.14e5 & ref0318241.14e3 - [trim 0, 0] 2017-11-14 09:45:28,155 [DEBUG] contig 11333 to 14979 2017-11-14 09:45:28,156 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,156 [DEBUG] Moving from ref0318241.14e5 to ref0318241.13e3 (p=1) 2017-11-14 09:45:28,156 [DEBUG] unimproved gap 2017-11-14 09:45:28,156 [DEBUG] Moving from ref0318241.13e3 to ref0318241.13e5 (p=1) 2017-11-14 09:45:28,156 [DEBUG] contig 2017-11-14 09:45:28,156 [DEBUG] who? ref0318241.13e5 ref0318241.13e3 2017-11-14 09:45:28,156 [DEBUG] Grabbing contig between nodes ref0318241.13e5 & ref0318241.13e3 - [trim 0, 0] 2017-11-14 09:45:28,156 [DEBUG] contig 10657 to 10991 2017-11-14 09:45:28,156 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,156 [DEBUG] Moving from ref0318241.13e5 to ref0318241.12e3 (p=1) 2017-11-14 09:45:28,156 [DEBUG] unimproved gap 2017-11-14 09:45:28,156 [DEBUG] Moving from ref0318241.12e3 to ref0318241.12e5 (p=1) 2017-11-14 09:45:28,156 [DEBUG] contig 2017-11-14 09:45:28,157 [DEBUG] who? ref0318241.12e5 ref0318241.12e3 2017-11-14 09:45:28,157 [DEBUG] Grabbing contig between nodes ref0318241.12e5 & ref0318241.12e3 - [trim 0, 0] 2017-11-14 09:45:28,157 [DEBUG] contig 10361 to 10395 2017-11-14 09:45:28,157 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,157 [DEBUG] Moving from ref0318241.12e5 to ref0318241.11e3 (p=1) 2017-11-14 09:45:28,157 [DEBUG] unimproved gap 2017-11-14 09:45:28,157 [DEBUG] Moving from ref0318241.11e3 to ref0318241.11e5 (p=1) 2017-11-14 09:45:28,157 [DEBUG] contig 2017-11-14 09:45:28,157 [DEBUG] who? ref0318241.11e5 ref0318241.11e3 2017-11-14 09:45:28,157 [DEBUG] Grabbing contig between nodes ref0318241.11e5 & ref0318241.11e3 - [trim 0, 0] 2017-11-14 09:45:28,157 [DEBUG] contig 8891 to 10078 2017-11-14 09:45:28,157 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,157 [DEBUG] Moving from ref0318241.11e5 to ref0318241.10e3 (p=1) 2017-11-14 09:45:28,157 [DEBUG] unimproved gap 2017-11-14 09:45:28,158 [DEBUG] Moving from ref0318241.10e3 to ref0318241.10e5 (p=1) 2017-11-14 09:45:28,158 [DEBUG] contig 2017-11-14 09:45:28,158 [DEBUG] who? ref0318241.10e5 ref0318241.10e3 2017-11-14 09:45:28,158 [DEBUG] Grabbing contig between nodes ref0318241.10e5 & ref0318241.10e3 - [trim 0, 0] 2017-11-14 09:45:28,158 [DEBUG] contig 8281 to 8657 2017-11-14 09:45:28,158 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,158 [DEBUG] Moving from ref0318241.10e5 to ref0318241.9e3 (p=1) 2017-11-14 09:45:28,158 [DEBUG] unimproved gap 2017-11-14 09:45:28,158 [DEBUG] Moving from ref0318241.9e3 to ref0318241.9e5 (p=1) 2017-11-14 09:45:28,158 [DEBUG] contig 2017-11-14 09:45:28,158 [DEBUG] who? ref0318241.9e5 ref0318241.9e3 2017-11-14 09:45:28,158 [DEBUG] Grabbing contig between nodes ref0318241.9e5 & ref0318241.9e3 - [trim 0, 0] 2017-11-14 09:45:28,158 [DEBUG] contig 6034 to 7758 2017-11-14 09:45:28,159 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,159 [DEBUG] Moving from ref0318241.9e5 to ref0318241.8e3 (p=1) 2017-11-14 09:45:28,159 [DEBUG] unimproved gap 2017-11-14 09:45:28,159 [DEBUG] Moving from ref0318241.8e3 to ref0318241.8e5 (p=1) 2017-11-14 09:45:28,159 [DEBUG] contig 2017-11-14 09:45:28,159 [DEBUG] who? ref0318241.8e5 ref0318241.8e3 2017-11-14 09:45:28,159 [DEBUG] Grabbing contig between nodes ref0318241.8e5 & ref0318241.8e3 - [trim 0, 0] 2017-11-14 09:45:28,159 [DEBUG] contig 5759 to 5803 2017-11-14 09:45:28,159 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,159 [DEBUG] Moving from ref0318241.8e5 to ref0318241.7e3 (p=1) 2017-11-14 09:45:28,159 [DEBUG] unimproved gap 2017-11-14 09:45:28,159 [DEBUG] Moving from ref0318241.7e3 to ref0318241.7e5 (p=1) 2017-11-14 09:45:28,159 [DEBUG] contig 2017-11-14 09:45:28,160 [DEBUG] who? ref0318241.7e5 ref0318241.7e3 2017-11-14 09:45:28,160 [DEBUG] Grabbing contig between nodes ref0318241.7e5 & ref0318241.7e3 - [trim 0, 0] 2017-11-14 09:45:28,160 [DEBUG] contig 5350 to 5528 2017-11-14 09:45:28,160 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,160 [DEBUG] Moving from ref0318241.7e5 to ref0318241.6e3 (p=1) 2017-11-14 09:45:28,160 [DEBUG] unimproved gap 2017-11-14 09:45:28,160 [DEBUG] Moving from ref0318241.6e3 to ref0318241.6e5 (p=1) 2017-11-14 09:45:28,160 [DEBUG] contig 2017-11-14 09:45:28,160 [DEBUG] who? ref0318241.6e5 ref0318241.6e3 2017-11-14 09:45:28,160 [DEBUG] Grabbing contig between nodes ref0318241.6e5 & ref0318241.6e3 - [trim 0, 0] 2017-11-14 09:45:28,160 [DEBUG] contig 5087 to 5156 2017-11-14 09:45:28,160 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,160 [DEBUG] Moving from ref0318241.6e5 to ref0318241.5e3 (p=1) 2017-11-14 09:45:28,161 [DEBUG] unimproved gap 2017-11-14 09:45:28,161 [DEBUG] Moving from ref0318241.5e3 to ref0318241.5e5 (p=1) 2017-11-14 09:45:28,161 [DEBUG] contig 2017-11-14 09:45:28,161 [DEBUG] who? ref0318241.5e5 ref0318241.5e3 2017-11-14 09:45:28,161 [DEBUG] Grabbing contig between nodes ref0318241.5e5 & ref0318241.5e3 - [trim 0, 0] 2017-11-14 09:45:28,161 [DEBUG] contig 4899 to 4950 2017-11-14 09:45:28,161 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,161 [DEBUG] Moving from ref0318241.5e5 to ref0318241.4e3 (p=1) 2017-11-14 09:45:28,161 [DEBUG] unimproved gap 2017-11-14 09:45:28,161 [DEBUG] Moving from ref0318241.4e3 to ref0318241.4e5 (p=1) 2017-11-14 09:45:28,161 [DEBUG] contig 2017-11-14 09:45:28,161 [DEBUG] who? ref0318241.4e5 ref0318241.4e3 2017-11-14 09:45:28,162 [DEBUG] Grabbing contig between nodes ref0318241.4e5 & ref0318241.4e3 - [trim 0, 0] 2017-11-14 09:45:28,162 [DEBUG] contig 3970 to 4787 2017-11-14 09:45:28,162 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,162 [DEBUG] Moving from ref0318241.4e5 to ref0318241.3e3 (p=1) 2017-11-14 09:45:28,162 [DEBUG] unimproved gap 2017-11-14 09:45:28,162 [DEBUG] Moving from ref0318241.3e3 to ref0318241.3e5 (p=1) 2017-11-14 09:45:28,162 [DEBUG] contig 2017-11-14 09:45:28,162 [DEBUG] who? ref0318241.3e5 ref0318241.3e3 2017-11-14 09:45:28,162 [DEBUG] Grabbing contig between nodes ref0318241.3e5 & ref0318241.3e3 - [trim 0, 0] 2017-11-14 09:45:28,162 [DEBUG] contig 3528 to 3748 2017-11-14 09:45:28,162 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,162 [DEBUG] Moving from ref0318241.3e5 to ref0318241.2e3 (p=1) 2017-11-14 09:45:28,162 [DEBUG] unimproved gap 2017-11-14 09:45:28,163 [DEBUG] Moving from ref0318241.2e3 to ref0318241.2e5 (p=1) 2017-11-14 09:45:28,163 [DEBUG] contig 2017-11-14 09:45:28,163 [DEBUG] who? ref0318241.2e5 ref0318241.2e3 2017-11-14 09:45:28,163 [DEBUG] Grabbing contig between nodes ref0318241.2e5 & ref0318241.2e3 - [trim 0, 0] 2017-11-14 09:45:28,163 [DEBUG] contig 1891 to 3479 2017-11-14 09:45:28,163 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,163 [DEBUG] Moving from ref0318241.2e5 to ref0318241.1e3 (p=1) 2017-11-14 09:45:28,163 [DEBUG] unimproved gap 2017-11-14 09:45:28,163 [DEBUG] Moving from ref0318241.1e3 to ref0318241.1e5 (p=1) 2017-11-14 09:45:28,163 [DEBUG] contig 2017-11-14 09:45:28,163 [DEBUG] who? ref0318241.1e5 ref0318241.1e3 2017-11-14 09:45:28,163 [DEBUG] Grabbing contig between nodes ref0318241.1e5 & ref0318241.1e3 - [trim 0, 0] 2017-11-14 09:45:28,163 [DEBUG] contig 1136 to 1442 2017-11-14 09:45:28,164 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,164 [DEBUG] Moving from ref0318241.1e5 to ref0318241.0e3 (p=1) 2017-11-14 09:45:28,164 [DEBUG] unimproved gap 2017-11-14 09:45:28,164 [DEBUG] Moving from ref0318241.0e3 to ref0318241e5 (p=1) 2017-11-14 09:45:28,164 [DEBUG] contig 2017-11-14 09:45:28,164 [DEBUG] who? ref0318241e5 ref0318241.0e3 2017-11-14 09:45:28,164 [DEBUG] Grabbing contig between nodes ref0318241e5 & ref0318241.0e3 - [trim 0, 0] 2017-11-14 09:45:28,164 [DEBUG] contig 0 to 847 2017-11-14 09:45:28,164 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,164 [DEBUG] FirstFlipping 54 2017-11-14 09:45:28,165 [DEBUG] Contig 55 2017-11-14 09:45:28,167 [DEBUG] Moving from ref0201942e5 to ref0201942.0e3 (p=1) 2017-11-14 09:45:28,167 [DEBUG] contig 2017-11-14 09:45:28,167 [DEBUG] who? ref0201942e5 ref0201942.0e3 2017-11-14 09:45:28,167 [DEBUG] Grabbing contig between nodes ref0201942e5 & ref0201942.0e3 - [trim 0, 0] 2017-11-14 09:45:28,167 [DEBUG] contig 0 to 1728 2017-11-14 09:45:28,167 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,167 [DEBUG] Moving from ref0201942.0e3 to ref0201942.1e5 (p=1) 2017-11-14 09:45:28,167 [DEBUG] unimproved gap 2017-11-14 09:45:28,167 [DEBUG] Moving from ref0201942.1e5 to ref0201942.1e3 (p=1) 2017-11-14 09:45:28,168 [DEBUG] contig 2017-11-14 09:45:28,168 [DEBUG] who? ref0201942.1e5 ref0201942.1e3 2017-11-14 09:45:28,168 [DEBUG] Grabbing contig between nodes ref0201942.1e5 & ref0201942.1e3 - [trim 0, 0] 2017-11-14 09:45:28,168 [DEBUG] contig 2278 to 3407 2017-11-14 09:45:28,168 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,168 [DEBUG] Moving from ref0201942.1e3 to ref0201942.2e5 (p=1) 2017-11-14 09:45:28,168 [DEBUG] unimproved gap 2017-11-14 09:45:28,168 [DEBUG] Moving from ref0201942.2e5 to ref0201942.2e3 (p=1) 2017-11-14 09:45:28,168 [DEBUG] contig 2017-11-14 09:45:28,168 [DEBUG] who? ref0201942.2e5 ref0201942.2e3 2017-11-14 09:45:28,168 [DEBUG] Grabbing contig between nodes ref0201942.2e5 & ref0201942.2e3 - [trim 0, 0] 2017-11-14 09:45:28,168 [DEBUG] contig 3607 to 3722 2017-11-14 09:45:28,168 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,169 [DEBUG] Moving from ref0201942.2e3 to ref0201942.3e5 (p=1) 2017-11-14 09:45:28,169 [DEBUG] unimproved gap 2017-11-14 09:45:28,169 [DEBUG] Moving from ref0201942.3e5 to ref0201942.3e3 (p=1) 2017-11-14 09:45:28,169 [DEBUG] contig 2017-11-14 09:45:28,169 [DEBUG] who? ref0201942.3e5 ref0201942.3e3 2017-11-14 09:45:28,169 [DEBUG] Grabbing contig between nodes ref0201942.3e5 & ref0201942.3e3 - [trim 0, 0] 2017-11-14 09:45:28,169 [DEBUG] contig 4330 to 4399 2017-11-14 09:45:28,169 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,169 [DEBUG] Moving from ref0201942.3e3 to ref0201942.4e5 (p=1) 2017-11-14 09:45:28,169 [DEBUG] unimproved gap 2017-11-14 09:45:28,169 [DEBUG] Moving from ref0201942.4e5 to ref0201942.4e3 (p=1) 2017-11-14 09:45:28,169 [DEBUG] contig 2017-11-14 09:45:28,169 [DEBUG] who? ref0201942.4e5 ref0201942.4e3 2017-11-14 09:45:28,170 [DEBUG] Grabbing contig between nodes ref0201942.4e5 & ref0201942.4e3 - [trim 0, 0] 2017-11-14 09:45:28,170 [DEBUG] contig 4605 to 5464 2017-11-14 09:45:28,170 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,170 [DEBUG] Moving from ref0201942.4e3 to ref0201942.5e5 (p=1) 2017-11-14 09:45:28,170 [DEBUG] unimproved gap 2017-11-14 09:45:28,170 [DEBUG] Moving from ref0201942.5e5 to ref0201942.5e3 (p=1) 2017-11-14 09:45:28,170 [DEBUG] contig 2017-11-14 09:45:28,170 [DEBUG] who? ref0201942.5e5 ref0201942.5e3 2017-11-14 09:45:28,170 [DEBUG] Grabbing contig between nodes ref0201942.5e5 & ref0201942.5e3 - [trim 0, 0] 2017-11-14 09:45:28,170 [DEBUG] contig 5717 to 7208 2017-11-14 09:45:28,170 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,171 [DEBUG] Moving from ref0201942.5e3 to ref0201942.6e5 (p=1) 2017-11-14 09:45:28,171 [DEBUG] unimproved gap 2017-11-14 09:45:28,171 [DEBUG] Moving from ref0201942.6e5 to ref0201942.6e3 (p=1) 2017-11-14 09:45:28,171 [DEBUG] contig 2017-11-14 09:45:28,171 [DEBUG] who? ref0201942.6e5 ref0201942.6e3 2017-11-14 09:45:28,171 [DEBUG] Grabbing contig between nodes ref0201942.6e5 & ref0201942.6e3 - [trim 0, 0] 2017-11-14 09:45:28,171 [DEBUG] contig 7285 to 8001 2017-11-14 09:45:28,171 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,171 [DEBUG] Moving from ref0201942.6e3 to ref0201942.7e5 (p=1) 2017-11-14 09:45:28,171 [DEBUG] unimproved gap 2017-11-14 09:45:28,171 [DEBUG] Moving from ref0201942.7e5 to ref0201942.7e3 (p=1) 2017-11-14 09:45:28,171 [DEBUG] contig 2017-11-14 09:45:28,171 [DEBUG] who? ref0201942.7e5 ref0201942.7e3 2017-11-14 09:45:28,172 [DEBUG] Grabbing contig between nodes ref0201942.7e5 & ref0201942.7e3 - [trim 0, 0] 2017-11-14 09:45:28,172 [DEBUG] contig 8221 to 8463 2017-11-14 09:45:28,172 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,172 [DEBUG] Moving from ref0201942.7e3 to ref0201942.8e5 (p=1) 2017-11-14 09:45:28,172 [DEBUG] unimproved gap 2017-11-14 09:45:28,172 [DEBUG] Moving from ref0201942.8e5 to ref0201942.8e3 (p=1) 2017-11-14 09:45:28,172 [DEBUG] contig 2017-11-14 09:45:28,172 [DEBUG] who? ref0201942.8e5 ref0201942.8e3 2017-11-14 09:45:28,172 [DEBUG] Grabbing contig between nodes ref0201942.8e5 & ref0201942.8e3 - [trim 0, 0] 2017-11-14 09:45:28,172 [DEBUG] contig 9029 to 9070 2017-11-14 09:45:28,172 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,172 [DEBUG] Moving from ref0201942.8e3 to ref0201942.9e5 (p=1) 2017-11-14 09:45:28,173 [DEBUG] unimproved gap 2017-11-14 09:45:28,173 [DEBUG] Moving from ref0201942.9e5 to ref0201942.9e3 (p=1) 2017-11-14 09:45:28,173 [DEBUG] contig 2017-11-14 09:45:28,173 [DEBUG] who? ref0201942.9e5 ref0201942.9e3 2017-11-14 09:45:28,173 [DEBUG] Grabbing contig between nodes ref0201942.9e5 & ref0201942.9e3 - [trim 0, 0] 2017-11-14 09:45:28,173 [DEBUG] contig 9246 to 10079 2017-11-14 09:45:28,173 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,173 [DEBUG] Moving from ref0201942.9e3 to ref0201942.10e5 (p=1) 2017-11-14 09:45:28,173 [DEBUG] unimproved gap 2017-11-14 09:45:28,173 [DEBUG] Moving from ref0201942.10e5 to ref0201942.10e3 (p=1) 2017-11-14 09:45:28,173 [DEBUG] contig 2017-11-14 09:45:28,173 [DEBUG] who? ref0201942.10e5 ref0201942.10e3 2017-11-14 09:45:28,173 [DEBUG] Grabbing contig between nodes ref0201942.10e5 & ref0201942.10e3 - [trim 0, 0] 2017-11-14 09:45:28,174 [DEBUG] contig 10130 to 11212 2017-11-14 09:45:28,174 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,174 [DEBUG] Moving from ref0201942.10e3 to ref0201942.11e5 (p=1) 2017-11-14 09:45:28,174 [DEBUG] unimproved gap 2017-11-14 09:45:28,174 [DEBUG] Moving from ref0201942.11e5 to ref0201942.11e3 (p=1) 2017-11-14 09:45:28,174 [DEBUG] contig 2017-11-14 09:45:28,174 [DEBUG] who? ref0201942.11e5 ref0201942.11e3 2017-11-14 09:45:28,174 [DEBUG] Grabbing contig between nodes ref0201942.11e5 & ref0201942.11e3 - [trim 0, 0] 2017-11-14 09:45:28,174 [DEBUG] contig 11702 to 12710 2017-11-14 09:45:28,174 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,174 [DEBUG] Moving from ref0201942.11e3 to ref0201942.12e5 (p=1) 2017-11-14 09:45:28,174 [DEBUG] unimproved gap 2017-11-14 09:45:28,174 [DEBUG] Moving from ref0201942.12e5 to ref0201942.12e3 (p=1) 2017-11-14 09:45:28,175 [DEBUG] contig 2017-11-14 09:45:28,175 [DEBUG] who? ref0201942.12e5 ref0201942.12e3 2017-11-14 09:45:28,175 [DEBUG] Grabbing contig between nodes ref0201942.12e5 & ref0201942.12e3 - [trim 0, 0] 2017-11-14 09:45:28,175 [DEBUG] contig 12809 to 12910 2017-11-14 09:45:28,175 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,175 [DEBUG] Moving from ref0201942.12e3 to ref0201942.13e5 (p=1) 2017-11-14 09:45:28,175 [DEBUG] unimproved gap 2017-11-14 09:45:28,175 [DEBUG] Moving from ref0201942.13e5 to ref0201942.13e3 (p=1) 2017-11-14 09:45:28,175 [DEBUG] contig 2017-11-14 09:45:28,175 [DEBUG] who? ref0201942.13e5 ref0201942.13e3 2017-11-14 09:45:28,175 [DEBUG] Grabbing contig between nodes ref0201942.13e5 & ref0201942.13e3 - [trim 0, 0] 2017-11-14 09:45:28,175 [DEBUG] contig 13031 to 13355 2017-11-14 09:45:28,176 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,176 [DEBUG] Moving from ref0201942.13e3 to ref0201942.14e5 (p=1) 2017-11-14 09:45:28,176 [DEBUG] unimproved gap 2017-11-14 09:45:28,176 [DEBUG] Moving from ref0201942.14e5 to ref0201942.14e3 (p=1) 2017-11-14 09:45:28,176 [DEBUG] contig 2017-11-14 09:45:28,176 [DEBUG] who? ref0201942.14e5 ref0201942.14e3 2017-11-14 09:45:28,176 [DEBUG] Grabbing contig between nodes ref0201942.14e5 & ref0201942.14e3 - [trim 0, 0] 2017-11-14 09:45:28,176 [DEBUG] contig 13505 to 16876 2017-11-14 09:45:28,176 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,176 [DEBUG] Moving from ref0201942.14e3 to ref0201942.15e5 (p=1) 2017-11-14 09:45:28,176 [DEBUG] unimproved gap 2017-11-14 09:45:28,176 [DEBUG] Moving from ref0201942.15e5 to ref0201942.15e3 (p=1) 2017-11-14 09:45:28,176 [DEBUG] contig 2017-11-14 09:45:28,177 [DEBUG] who? ref0201942.15e5 ref0201942.15e3 2017-11-14 09:45:28,177 [DEBUG] Grabbing contig between nodes ref0201942.15e5 & ref0201942.15e3 - [trim 0, 0] 2017-11-14 09:45:28,177 [DEBUG] contig 17190 to 17760 2017-11-14 09:45:28,177 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,177 [DEBUG] Moving from ref0201942.15e3 to ref0201942.16e5 (p=1) 2017-11-14 09:45:28,177 [DEBUG] unimproved gap 2017-11-14 09:45:28,177 [DEBUG] Moving from ref0201942.16e5 to ref0201942.16e3 (p=1) 2017-11-14 09:45:28,177 [DEBUG] contig 2017-11-14 09:45:28,177 [DEBUG] who? ref0201942.16e5 ref0201942.16e3 2017-11-14 09:45:28,177 [DEBUG] Grabbing contig between nodes ref0201942.16e5 & ref0201942.16e3 - [trim 0, 0] 2017-11-14 09:45:28,177 [DEBUG] contig 17898 to 17960 2017-11-14 09:45:28,177 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,177 [DEBUG] Moving from ref0201942.16e3 to ref0201942.17e5 (p=1) 2017-11-14 09:45:28,178 [DEBUG] unimproved gap 2017-11-14 09:45:28,178 [DEBUG] Moving from ref0201942.17e5 to ref0201942.17e3 (p=1) 2017-11-14 09:45:28,178 [DEBUG] contig 2017-11-14 09:45:28,178 [DEBUG] who? ref0201942.17e5 ref0201942.17e3 2017-11-14 09:45:28,178 [DEBUG] Grabbing contig between nodes ref0201942.17e5 & ref0201942.17e3 - [trim 0, 0] 2017-11-14 09:45:28,178 [DEBUG] contig 18269 to 18814 2017-11-14 09:45:28,178 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,178 [DEBUG] Moving from ref0201942.17e3 to ref0201942.18e5 (p=1) 2017-11-14 09:45:28,178 [DEBUG] unimproved gap 2017-11-14 09:45:28,178 [DEBUG] Moving from ref0201942.18e5 to ref0201942e3 (p=1) 2017-11-14 09:45:28,178 [DEBUG] contig 2017-11-14 09:45:28,178 [DEBUG] who? ref0201942.18e5 ref0201942e3 2017-11-14 09:45:28,178 [DEBUG] Grabbing contig between nodes ref0201942.18e5 & ref0201942e3 - [trim 0, 0] 2017-11-14 09:45:28,179 [DEBUG] contig 18939 to 18973 2017-11-14 09:45:28,179 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,179 [DEBUG] Contig 56 2017-11-14 09:45:28,181 [DEBUG] Moving from ref0598517e5 to ref0598517.0e3 (p=1) 2017-11-14 09:45:28,181 [DEBUG] contig 2017-11-14 09:45:28,181 [DEBUG] who? ref0598517e5 ref0598517.0e3 2017-11-14 09:45:28,181 [DEBUG] Grabbing contig between nodes ref0598517e5 & ref0598517.0e3 - [trim 0, 0] 2017-11-14 09:45:28,181 [DEBUG] contig 0 to 336 2017-11-14 09:45:28,182 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,182 [DEBUG] Moving from ref0598517.0e3 to ref0598517.1e5 (p=1) 2017-11-14 09:45:28,182 [DEBUG] unimproved gap 2017-11-14 09:45:28,182 [DEBUG] Moving from ref0598517.1e5 to ref0598517.1e3 (p=1) 2017-11-14 09:45:28,182 [DEBUG] contig 2017-11-14 09:45:28,182 [DEBUG] who? ref0598517.1e5 ref0598517.1e3 2017-11-14 09:45:28,182 [DEBUG] Grabbing contig between nodes ref0598517.1e5 & ref0598517.1e3 - [trim 0, 0] 2017-11-14 09:45:28,182 [DEBUG] contig 422 to 1180 2017-11-14 09:45:28,182 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,182 [DEBUG] Moving from ref0598517.1e3 to ref0598517.2e5 (p=1) 2017-11-14 09:45:28,182 [DEBUG] unimproved gap 2017-11-14 09:45:28,182 [DEBUG] Moving from ref0598517.2e5 to ref0598517.2e3 (p=1) 2017-11-14 09:45:28,182 [DEBUG] contig 2017-11-14 09:45:28,183 [DEBUG] who? ref0598517.2e5 ref0598517.2e3 2017-11-14 09:45:28,183 [DEBUG] Grabbing contig between nodes ref0598517.2e5 & ref0598517.2e3 - [trim 0, 0] 2017-11-14 09:45:28,183 [DEBUG] contig 1416 to 1477 2017-11-14 09:45:28,183 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,183 [DEBUG] Moving from ref0598517.2e3 to ref0598517.3e5 (p=1) 2017-11-14 09:45:28,183 [DEBUG] unimproved gap 2017-11-14 09:45:28,183 [DEBUG] Moving from ref0598517.3e5 to ref0598517.3e3 (p=1) 2017-11-14 09:45:28,183 [DEBUG] contig 2017-11-14 09:45:28,183 [DEBUG] who? ref0598517.3e5 ref0598517.3e3 2017-11-14 09:45:28,183 [DEBUG] Grabbing contig between nodes ref0598517.3e5 & ref0598517.3e3 - [trim 0, 0] 2017-11-14 09:45:28,183 [DEBUG] contig 1713 to 1771 2017-11-14 09:45:28,183 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,183 [DEBUG] Moving from ref0598517.3e3 to ref0598517.4e5 (p=1) 2017-11-14 09:45:28,184 [DEBUG] unimproved gap 2017-11-14 09:45:28,184 [DEBUG] Moving from ref0598517.4e5 to ref0598517.4e3 (p=1) 2017-11-14 09:45:28,184 [DEBUG] contig 2017-11-14 09:45:28,184 [DEBUG] who? ref0598517.4e5 ref0598517.4e3 2017-11-14 09:45:28,184 [DEBUG] Grabbing contig between nodes ref0598517.4e5 & ref0598517.4e3 - [trim 0, 0] 2017-11-14 09:45:28,184 [DEBUG] contig 2091 to 2141 2017-11-14 09:45:28,184 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,184 [DEBUG] Moving from ref0598517.4e3 to ref0598517.5e5 (p=1) 2017-11-14 09:45:28,184 [DEBUG] unimproved gap 2017-11-14 09:45:28,184 [DEBUG] Moving from ref0598517.5e5 to ref0598517.5e3 (p=1) 2017-11-14 09:45:28,184 [DEBUG] contig 2017-11-14 09:45:28,184 [DEBUG] who? ref0598517.5e5 ref0598517.5e3 2017-11-14 09:45:28,185 [DEBUG] Grabbing contig between nodes ref0598517.5e5 & ref0598517.5e3 - [trim 0, 0] 2017-11-14 09:45:28,185 [DEBUG] contig 2371 to 2526 2017-11-14 09:45:28,185 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,185 [DEBUG] Moving from ref0598517.5e3 to ref0598517.6e5 (p=1) 2017-11-14 09:45:28,185 [DEBUG] unimproved gap 2017-11-14 09:45:28,185 [DEBUG] Moving from ref0598517.6e5 to ref0598517.6e3 (p=1) 2017-11-14 09:45:28,185 [DEBUG] contig 2017-11-14 09:45:28,185 [DEBUG] who? ref0598517.6e5 ref0598517.6e3 2017-11-14 09:45:28,185 [DEBUG] Grabbing contig between nodes ref0598517.6e5 & ref0598517.6e3 - [trim 0, 0] 2017-11-14 09:45:28,185 [DEBUG] contig 2920 to 3136 2017-11-14 09:45:28,185 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,185 [DEBUG] Moving from ref0598517.6e3 to ref0598517.7e5 (p=1) 2017-11-14 09:45:28,185 [DEBUG] unimproved gap 2017-11-14 09:45:28,186 [DEBUG] Moving from ref0598517.7e5 to ref0598517.7e3 (p=1) 2017-11-14 09:45:28,186 [DEBUG] contig 2017-11-14 09:45:28,186 [DEBUG] who? ref0598517.7e5 ref0598517.7e3 2017-11-14 09:45:28,186 [DEBUG] Grabbing contig between nodes ref0598517.7e5 & ref0598517.7e3 - [trim 0, 0] 2017-11-14 09:45:28,186 [DEBUG] contig 3439 to 5520 2017-11-14 09:45:28,186 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,186 [DEBUG] Moving from ref0598517.7e3 to ref0598517.8e5 (p=1) 2017-11-14 09:45:28,186 [DEBUG] unimproved gap 2017-11-14 09:45:28,186 [DEBUG] Moving from ref0598517.8e5 to ref0598517.8e3 (p=1) 2017-11-14 09:45:28,186 [DEBUG] contig 2017-11-14 09:45:28,186 [DEBUG] who? ref0598517.8e5 ref0598517.8e3 2017-11-14 09:45:28,186 [DEBUG] Grabbing contig between nodes ref0598517.8e5 & ref0598517.8e3 - [trim 0, 0] 2017-11-14 09:45:28,186 [DEBUG] contig 5856 to 8128 2017-11-14 09:45:28,187 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,187 [DEBUG] Moving from ref0598517.8e3 to ref0598517.9e5 (p=1) 2017-11-14 09:45:28,187 [DEBUG] unimproved gap 2017-11-14 09:45:28,187 [DEBUG] Moving from ref0598517.9e5 to ref0598517.9e3 (p=1) 2017-11-14 09:45:28,187 [DEBUG] contig 2017-11-14 09:45:28,187 [DEBUG] who? ref0598517.9e5 ref0598517.9e3 2017-11-14 09:45:28,187 [DEBUG] Grabbing contig between nodes ref0598517.9e5 & ref0598517.9e3 - [trim 0, 0] 2017-11-14 09:45:28,187 [DEBUG] contig 8356 to 8404 2017-11-14 09:45:28,187 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,187 [DEBUG] Moving from ref0598517.9e3 to ref0598517.10e5 (p=1) 2017-11-14 09:45:28,187 [DEBUG] unimproved gap 2017-11-14 09:45:28,187 [DEBUG] Moving from ref0598517.10e5 to ref0598517.10e3 (p=1) 2017-11-14 09:45:28,187 [DEBUG] contig 2017-11-14 09:45:28,188 [DEBUG] who? ref0598517.10e5 ref0598517.10e3 2017-11-14 09:45:28,188 [DEBUG] Grabbing contig between nodes ref0598517.10e5 & ref0598517.10e3 - [trim 0, 0] 2017-11-14 09:45:28,188 [DEBUG] contig 8471 to 8507 2017-11-14 09:45:28,188 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,188 [DEBUG] Moving from ref0598517.10e3 to ref0598517.11e5 (p=1) 2017-11-14 09:45:28,188 [DEBUG] unimproved gap 2017-11-14 09:45:28,188 [DEBUG] Moving from ref0598517.11e5 to ref0598517.11e3 (p=1) 2017-11-14 09:45:28,188 [DEBUG] contig 2017-11-14 09:45:28,188 [DEBUG] who? ref0598517.11e5 ref0598517.11e3 2017-11-14 09:45:28,188 [DEBUG] Grabbing contig between nodes ref0598517.11e5 & ref0598517.11e3 - [trim 0, 0] 2017-11-14 09:45:28,188 [DEBUG] contig 8574 to 9437 2017-11-14 09:45:28,188 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,188 [DEBUG] Moving from ref0598517.11e3 to ref0598517.12e5 (p=1) 2017-11-14 09:45:28,189 [DEBUG] unimproved gap 2017-11-14 09:45:28,189 [DEBUG] Moving from ref0598517.12e5 to ref0598517.12e3 (p=1) 2017-11-14 09:45:28,189 [DEBUG] contig 2017-11-14 09:45:28,189 [DEBUG] who? ref0598517.12e5 ref0598517.12e3 2017-11-14 09:45:28,189 [DEBUG] Grabbing contig between nodes ref0598517.12e5 & ref0598517.12e3 - [trim 0, 0] 2017-11-14 09:45:28,189 [DEBUG] contig 9552 to 9594 2017-11-14 09:45:28,189 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,189 [DEBUG] Moving from ref0598517.12e3 to ref0598517.13e5 (p=1) 2017-11-14 09:45:28,189 [DEBUG] unimproved gap 2017-11-14 09:45:28,189 [DEBUG] Moving from ref0598517.13e5 to ref0598517.13e3 (p=1) 2017-11-14 09:45:28,189 [DEBUG] contig 2017-11-14 09:45:28,189 [DEBUG] who? ref0598517.13e5 ref0598517.13e3 2017-11-14 09:45:28,189 [DEBUG] Grabbing contig between nodes ref0598517.13e5 & ref0598517.13e3 - [trim 0, 0] 2017-11-14 09:45:28,190 [DEBUG] contig 9751 to 10564 2017-11-14 09:45:28,190 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,190 [DEBUG] Moving from ref0598517.13e3 to ref0598517.14e5 (p=1) 2017-11-14 09:45:28,190 [DEBUG] unimproved gap 2017-11-14 09:45:28,190 [DEBUG] Moving from ref0598517.14e5 to ref0598517.14e3 (p=1) 2017-11-14 09:45:28,190 [DEBUG] contig 2017-11-14 09:45:28,190 [DEBUG] who? ref0598517.14e5 ref0598517.14e3 2017-11-14 09:45:28,190 [DEBUG] Grabbing contig between nodes ref0598517.14e5 & ref0598517.14e3 - [trim 0, 0] 2017-11-14 09:45:28,190 [DEBUG] contig 10717 to 13854 2017-11-14 09:45:28,190 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,190 [DEBUG] Moving from ref0598517.14e3 to ref0598517.15e5 (p=1) 2017-11-14 09:45:28,190 [DEBUG] unimproved gap 2017-11-14 09:45:28,190 [DEBUG] Moving from ref0598517.15e5 to ref0598517.15e3 (p=1) 2017-11-14 09:45:28,191 [DEBUG] contig 2017-11-14 09:45:28,191 [DEBUG] who? ref0598517.15e5 ref0598517.15e3 2017-11-14 09:45:28,191 [DEBUG] Grabbing contig between nodes ref0598517.15e5 & ref0598517.15e3 - [trim 0, 0] 2017-11-14 09:45:28,191 [DEBUG] contig 14148 to 15575 2017-11-14 09:45:28,191 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,191 [DEBUG] Moving from ref0598517.15e3 to ref0598517.16e5 (p=1) 2017-11-14 09:45:28,191 [DEBUG] unimproved gap 2017-11-14 09:45:28,191 [DEBUG] Moving from ref0598517.16e5 to ref0598517.16e3 (p=1) 2017-11-14 09:45:28,191 [DEBUG] contig 2017-11-14 09:45:28,191 [DEBUG] who? ref0598517.16e5 ref0598517.16e3 2017-11-14 09:45:28,191 [DEBUG] Grabbing contig between nodes ref0598517.16e5 & ref0598517.16e3 - [trim 0, 0] 2017-11-14 09:45:28,191 [DEBUG] contig 15837 to 16031 2017-11-14 09:45:28,192 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,192 [DEBUG] Moving from ref0598517.16e3 to ref0598517.17e5 (p=1) 2017-11-14 09:45:28,192 [DEBUG] unimproved gap 2017-11-14 09:45:28,192 [DEBUG] Moving from ref0598517.17e5 to ref0598517.17e3 (p=1) 2017-11-14 09:45:28,192 [DEBUG] contig 2017-11-14 09:45:28,192 [DEBUG] who? ref0598517.17e5 ref0598517.17e3 2017-11-14 09:45:28,192 [DEBUG] Grabbing contig between nodes ref0598517.17e5 & ref0598517.17e3 - [trim 0, 0] 2017-11-14 09:45:28,192 [DEBUG] contig 16427 to 16482 2017-11-14 09:45:28,192 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,192 [DEBUG] Moving from ref0598517.17e3 to ref0598517.18e5 (p=1) 2017-11-14 09:45:28,192 [DEBUG] unimproved gap 2017-11-14 09:45:28,192 [DEBUG] Moving from ref0598517.18e5 to ref0598517e3 (p=1) 2017-11-14 09:45:28,192 [DEBUG] contig 2017-11-14 09:45:28,193 [DEBUG] who? ref0598517.18e5 ref0598517e3 2017-11-14 09:45:28,193 [DEBUG] Grabbing contig between nodes ref0598517.18e5 & ref0598517e3 - [trim 0, 0] 2017-11-14 09:45:28,193 [DEBUG] contig 16706 to 16972 2017-11-14 09:45:28,193 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,193 [DEBUG] Contig 57 2017-11-14 09:45:28,195 [DEBUG] Moving from ref0160888e3 to ref0160888.18e5 (p=1) 2017-11-14 09:45:28,195 [DEBUG] contig 2017-11-14 09:45:28,195 [DEBUG] who? ref0160888.18e5 ref0160888e3 2017-11-14 09:45:28,195 [DEBUG] Grabbing contig between nodes ref0160888.18e5 & ref0160888e3 - [trim 0, 0] 2017-11-14 09:45:28,195 [DEBUG] contig 8002 to 8466 2017-11-14 09:45:28,196 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,196 [DEBUG] Moving from ref0160888.18e5 to ref0160888.17e3 (p=1) 2017-11-14 09:45:28,196 [DEBUG] unimproved gap 2017-11-14 09:45:28,196 [DEBUG] Moving from ref0160888.17e3 to ref0160888.17e5 (p=1) 2017-11-14 09:45:28,196 [DEBUG] contig 2017-11-14 09:45:28,196 [DEBUG] who? ref0160888.17e5 ref0160888.17e3 2017-11-14 09:45:28,196 [DEBUG] Grabbing contig between nodes ref0160888.17e5 & ref0160888.17e3 - [trim 0, 0] 2017-11-14 09:45:28,196 [DEBUG] contig 7305 to 7478 2017-11-14 09:45:28,196 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,196 [DEBUG] Moving from ref0160888.17e5 to ref0160888.16e3 (p=1) 2017-11-14 09:45:28,196 [DEBUG] unimproved gap 2017-11-14 09:45:28,196 [DEBUG] Moving from ref0160888.16e3 to ref0160888.16e5 (p=1) 2017-11-14 09:45:28,197 [DEBUG] contig 2017-11-14 09:45:28,197 [DEBUG] who? ref0160888.16e5 ref0160888.16e3 2017-11-14 09:45:28,197 [DEBUG] Grabbing contig between nodes ref0160888.16e5 & ref0160888.16e3 - [trim 0, 0] 2017-11-14 09:45:28,197 [DEBUG] contig 6963 to 7006 2017-11-14 09:45:28,197 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,197 [DEBUG] Moving from ref0160888.16e5 to ref0160888.15e3 (p=1) 2017-11-14 09:45:28,197 [DEBUG] unimproved gap 2017-11-14 09:45:28,197 [DEBUG] Moving from ref0160888.15e3 to ref0160888.15e5 (p=1) 2017-11-14 09:45:28,197 [DEBUG] contig 2017-11-14 09:45:28,197 [DEBUG] who? ref0160888.15e5 ref0160888.15e3 2017-11-14 09:45:28,197 [DEBUG] Grabbing contig between nodes ref0160888.15e5 & ref0160888.15e3 - [trim 0, 0] 2017-11-14 09:45:28,197 [DEBUG] contig 6063 to 6701 2017-11-14 09:45:28,197 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,198 [DEBUG] Moving from ref0160888.15e5 to ref0160888.14e3 (p=1) 2017-11-14 09:45:28,198 [DEBUG] unimproved gap 2017-11-14 09:45:28,198 [DEBUG] Moving from ref0160888.14e3 to ref0160888.14e5 (p=1) 2017-11-14 09:45:28,198 [DEBUG] contig 2017-11-14 09:45:28,198 [DEBUG] who? ref0160888.14e5 ref0160888.14e3 2017-11-14 09:45:28,198 [DEBUG] Grabbing contig between nodes ref0160888.14e5 & ref0160888.14e3 - [trim 0, 0] 2017-11-14 09:45:28,198 [DEBUG] contig 5491 to 5575 2017-11-14 09:45:28,198 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,198 [DEBUG] Moving from ref0160888.14e5 to ref0160888.13e3 (p=1) 2017-11-14 09:45:28,198 [DEBUG] unimproved gap 2017-11-14 09:45:28,198 [DEBUG] Moving from ref0160888.13e3 to ref0160888.13e5 (p=1) 2017-11-14 09:45:28,198 [DEBUG] contig 2017-11-14 09:45:28,198 [DEBUG] who? ref0160888.13e5 ref0160888.13e3 2017-11-14 09:45:28,199 [DEBUG] Grabbing contig between nodes ref0160888.13e5 & ref0160888.13e3 - [trim 0, 0] 2017-11-14 09:45:28,199 [DEBUG] contig 4842 to 4930 2017-11-14 09:45:28,199 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,199 [DEBUG] Moving from ref0160888.13e5 to ref0160888.12e3 (p=1) 2017-11-14 09:45:28,199 [DEBUG] unimproved gap 2017-11-14 09:45:28,199 [DEBUG] Moving from ref0160888.12e3 to ref0160888.12e5 (p=1) 2017-11-14 09:45:28,199 [DEBUG] contig 2017-11-14 09:45:28,199 [DEBUG] who? ref0160888.12e5 ref0160888.12e3 2017-11-14 09:45:28,199 [DEBUG] Grabbing contig between nodes ref0160888.12e5 & ref0160888.12e3 - [trim 0, 0] 2017-11-14 09:45:28,199 [DEBUG] contig 4036 to 4558 2017-11-14 09:45:28,199 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,199 [DEBUG] Moving from ref0160888.12e5 to ref0160888.11e3 (p=1) 2017-11-14 09:45:28,199 [DEBUG] unimproved gap 2017-11-14 09:45:28,200 [DEBUG] Moving from ref0160888.11e3 to ref0160888.11e5 (p=1) 2017-11-14 09:45:28,200 [DEBUG] contig 2017-11-14 09:45:28,200 [DEBUG] who? ref0160888.11e5 ref0160888.11e3 2017-11-14 09:45:28,200 [DEBUG] Grabbing contig between nodes ref0160888.11e5 & ref0160888.11e3 - [trim 0, 0] 2017-11-14 09:45:28,200 [DEBUG] contig 3685 to 3943 2017-11-14 09:45:28,200 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,200 [DEBUG] Moving from ref0160888.11e5 to ref0160888.10e3 (p=1) 2017-11-14 09:45:28,200 [DEBUG] unimproved gap 2017-11-14 09:45:28,200 [DEBUG] Moving from ref0160888.10e3 to ref0160888.10e5 (p=1) 2017-11-14 09:45:28,200 [DEBUG] contig 2017-11-14 09:45:28,200 [DEBUG] who? ref0160888.10e5 ref0160888.10e3 2017-11-14 09:45:28,200 [DEBUG] Grabbing contig between nodes ref0160888.10e5 & ref0160888.10e3 - [trim 0, 0] 2017-11-14 09:45:28,200 [DEBUG] contig 3453 to 3543 2017-11-14 09:45:28,201 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,201 [DEBUG] Moving from ref0160888.10e5 to ref0160888.9e3 (p=1) 2017-11-14 09:45:28,201 [DEBUG] unimproved gap 2017-11-14 09:45:28,201 [DEBUG] Moving from ref0160888.9e3 to ref0160888.9e5 (p=1) 2017-11-14 09:45:28,201 [DEBUG] contig 2017-11-14 09:45:28,201 [DEBUG] who? ref0160888.9e5 ref0160888.9e3 2017-11-14 09:45:28,201 [DEBUG] Grabbing contig between nodes ref0160888.9e5 & ref0160888.9e3 - [trim 0, 0] 2017-11-14 09:45:28,201 [DEBUG] contig 3353 to 3409 2017-11-14 09:45:28,201 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,201 [DEBUG] Moving from ref0160888.9e5 to ref0160888.8e3 (p=1) 2017-11-14 09:45:28,201 [DEBUG] unimproved gap 2017-11-14 09:45:28,201 [DEBUG] Moving from ref0160888.8e3 to ref0160888.8e5 (p=1) 2017-11-14 09:45:28,201 [DEBUG] contig 2017-11-14 09:45:28,202 [DEBUG] who? ref0160888.8e5 ref0160888.8e3 2017-11-14 09:45:28,202 [DEBUG] Grabbing contig between nodes ref0160888.8e5 & ref0160888.8e3 - [trim 0, 0] 2017-11-14 09:45:28,202 [DEBUG] contig 2841 to 3286 2017-11-14 09:45:28,202 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,202 [DEBUG] Moving from ref0160888.8e5 to ref0160888.7e3 (p=1) 2017-11-14 09:45:28,202 [DEBUG] unimproved gap 2017-11-14 09:45:28,202 [DEBUG] Moving from ref0160888.7e3 to ref0160888.7e5 (p=1) 2017-11-14 09:45:28,202 [DEBUG] contig 2017-11-14 09:45:28,202 [DEBUG] who? ref0160888.7e5 ref0160888.7e3 2017-11-14 09:45:28,202 [DEBUG] Grabbing contig between nodes ref0160888.7e5 & ref0160888.7e3 - [trim 0, 0] 2017-11-14 09:45:28,202 [DEBUG] contig 2666 to 2742 2017-11-14 09:45:28,202 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,202 [DEBUG] Moving from ref0160888.7e5 to ref0160888.6e3 (p=1) 2017-11-14 09:45:28,203 [DEBUG] unimproved gap 2017-11-14 09:45:28,203 [DEBUG] Moving from ref0160888.6e3 to ref0160888.6e5 (p=1) 2017-11-14 09:45:28,203 [DEBUG] contig 2017-11-14 09:45:28,203 [DEBUG] who? ref0160888.6e5 ref0160888.6e3 2017-11-14 09:45:28,203 [DEBUG] Grabbing contig between nodes ref0160888.6e5 & ref0160888.6e3 - [trim 0, 0] 2017-11-14 09:45:28,203 [DEBUG] contig 2564 to 2625 2017-11-14 09:45:28,203 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,203 [DEBUG] Moving from ref0160888.6e5 to ref0160888.5e3 (p=1) 2017-11-14 09:45:28,203 [DEBUG] unimproved gap 2017-11-14 09:45:28,203 [DEBUG] Moving from ref0160888.5e3 to ref0160888.5e5 (p=1) 2017-11-14 09:45:28,203 [DEBUG] contig 2017-11-14 09:45:28,203 [DEBUG] who? ref0160888.5e5 ref0160888.5e3 2017-11-14 09:45:28,203 [DEBUG] Grabbing contig between nodes ref0160888.5e5 & ref0160888.5e3 - [trim 0, 0] 2017-11-14 09:45:28,204 [DEBUG] contig 2421 to 2491 2017-11-14 09:45:28,204 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,204 [DEBUG] Moving from ref0160888.5e5 to ref0160888.4e3 (p=1) 2017-11-14 09:45:28,204 [DEBUG] unimproved gap 2017-11-14 09:45:28,204 [DEBUG] Moving from ref0160888.4e3 to ref0160888.4e5 (p=1) 2017-11-14 09:45:28,204 [DEBUG] contig 2017-11-14 09:45:28,204 [DEBUG] who? ref0160888.4e5 ref0160888.4e3 2017-11-14 09:45:28,204 [DEBUG] Grabbing contig between nodes ref0160888.4e5 & ref0160888.4e3 - [trim 0, 0] 2017-11-14 09:45:28,204 [DEBUG] contig 1821 to 2385 2017-11-14 09:45:28,204 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,204 [DEBUG] Moving from ref0160888.4e5 to ref0160888.3e3 (p=1) 2017-11-14 09:45:28,204 [DEBUG] unimproved gap 2017-11-14 09:45:28,205 [DEBUG] Moving from ref0160888.3e3 to ref0160888.3e5 (p=1) 2017-11-14 09:45:28,205 [DEBUG] contig 2017-11-14 09:45:28,205 [DEBUG] who? ref0160888.3e5 ref0160888.3e3 2017-11-14 09:45:28,205 [DEBUG] Grabbing contig between nodes ref0160888.3e5 & ref0160888.3e3 - [trim 0, 0] 2017-11-14 09:45:28,205 [DEBUG] contig 1588 to 1686 2017-11-14 09:45:28,205 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,205 [DEBUG] Moving from ref0160888.3e5 to ref0160888.2e3 (p=1) 2017-11-14 09:45:28,205 [DEBUG] unimproved gap 2017-11-14 09:45:28,205 [DEBUG] Moving from ref0160888.2e3 to ref0160888.2e5 (p=1) 2017-11-14 09:45:28,205 [DEBUG] contig 2017-11-14 09:45:28,205 [DEBUG] who? ref0160888.2e5 ref0160888.2e3 2017-11-14 09:45:28,205 [DEBUG] Grabbing contig between nodes ref0160888.2e5 & ref0160888.2e3 - [trim 0, 0] 2017-11-14 09:45:28,205 [DEBUG] contig 1323 to 1375 2017-11-14 09:45:28,206 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,206 [DEBUG] Moving from ref0160888.2e5 to ref0160888.1e3 (p=1) 2017-11-14 09:45:28,206 [DEBUG] unimproved gap 2017-11-14 09:45:28,206 [DEBUG] Moving from ref0160888.1e3 to ref0160888.1e5 (p=1) 2017-11-14 09:45:28,206 [DEBUG] contig 2017-11-14 09:45:28,206 [DEBUG] who? ref0160888.1e5 ref0160888.1e3 2017-11-14 09:45:28,206 [DEBUG] Grabbing contig between nodes ref0160888.1e5 & ref0160888.1e3 - [trim 0, 0] 2017-11-14 09:45:28,206 [DEBUG] contig 905 to 1272 2017-11-14 09:45:28,206 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,206 [DEBUG] Moving from ref0160888.1e5 to ref0160888.0e3 (p=1) 2017-11-14 09:45:28,206 [DEBUG] unimproved gap 2017-11-14 09:45:28,206 [DEBUG] Moving from ref0160888.0e3 to ref0160888e5 (p=1) 2017-11-14 09:45:28,206 [DEBUG] contig 2017-11-14 09:45:28,207 [DEBUG] who? ref0160888e5 ref0160888.0e3 2017-11-14 09:45:28,207 [DEBUG] Grabbing contig between nodes ref0160888e5 & ref0160888.0e3 - [trim 0, 0] 2017-11-14 09:45:28,207 [DEBUG] contig 0 to 724 2017-11-14 09:45:28,207 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,207 [DEBUG] FirstFlipping 57 2017-11-14 09:45:28,207 [DEBUG] Contig 58 2017-11-14 09:45:28,209 [DEBUG] Moving from ref0520864e3 to ref0520864.18e5 (p=1) 2017-11-14 09:45:28,209 [DEBUG] contig 2017-11-14 09:45:28,210 [DEBUG] who? ref0520864.18e5 ref0520864e3 2017-11-14 09:45:28,210 [DEBUG] Grabbing contig between nodes ref0520864.18e5 & ref0520864e3 - [trim 0, 0] 2017-11-14 09:45:28,210 [DEBUG] contig 29237 to 29363 2017-11-14 09:45:28,210 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,210 [DEBUG] Moving from ref0520864.18e5 to ref0520864.17e3 (p=1) 2017-11-14 09:45:28,210 [DEBUG] unimproved gap 2017-11-14 09:45:28,210 [DEBUG] Moving from ref0520864.17e3 to ref0520864.17e5 (p=1) 2017-11-14 09:45:28,210 [DEBUG] contig 2017-11-14 09:45:28,210 [DEBUG] who? ref0520864.17e5 ref0520864.17e3 2017-11-14 09:45:28,210 [DEBUG] Grabbing contig between nodes ref0520864.17e5 & ref0520864.17e3 - [trim 0, 0] 2017-11-14 09:45:28,210 [DEBUG] contig 28671 to 29093 2017-11-14 09:45:28,210 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,210 [DEBUG] Moving from ref0520864.17e5 to ref0520864.16e3 (p=1) 2017-11-14 09:45:28,211 [DEBUG] unimproved gap 2017-11-14 09:45:28,211 [DEBUG] Moving from ref0520864.16e3 to ref0520864.16e5 (p=1) 2017-11-14 09:45:28,211 [DEBUG] contig 2017-11-14 09:45:28,211 [DEBUG] who? ref0520864.16e5 ref0520864.16e3 2017-11-14 09:45:28,211 [DEBUG] Grabbing contig between nodes ref0520864.16e5 & ref0520864.16e3 - [trim 0, 0] 2017-11-14 09:45:28,211 [DEBUG] contig 27954 to 28549 2017-11-14 09:45:28,211 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,211 [DEBUG] Moving from ref0520864.16e5 to ref0520864.15e3 (p=1) 2017-11-14 09:45:28,211 [DEBUG] unimproved gap 2017-11-14 09:45:28,211 [DEBUG] Moving from ref0520864.15e3 to ref0520864.15e5 (p=1) 2017-11-14 09:45:28,211 [DEBUG] contig 2017-11-14 09:45:28,211 [DEBUG] who? ref0520864.15e5 ref0520864.15e3 2017-11-14 09:45:28,211 [DEBUG] Grabbing contig between nodes ref0520864.15e5 & ref0520864.15e3 - [trim 0, 0] 2017-11-14 09:45:28,212 [DEBUG] contig 24942 to 27802 2017-11-14 09:45:28,212 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,212 [DEBUG] Moving from ref0520864.15e5 to ref0520864.14e3 (p=1) 2017-11-14 09:45:28,212 [DEBUG] unimproved gap 2017-11-14 09:45:28,212 [DEBUG] Moving from ref0520864.14e3 to ref0520864.14e5 (p=1) 2017-11-14 09:45:28,212 [DEBUG] contig 2017-11-14 09:45:28,212 [DEBUG] who? ref0520864.14e5 ref0520864.14e3 2017-11-14 09:45:28,212 [DEBUG] Grabbing contig between nodes ref0520864.14e5 & ref0520864.14e3 - [trim 0, 0] 2017-11-14 09:45:28,212 [DEBUG] contig 23840 to 24879 2017-11-14 09:45:28,212 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,212 [DEBUG] Moving from ref0520864.14e5 to ref0520864.13e3 (p=1) 2017-11-14 09:45:28,212 [DEBUG] unimproved gap 2017-11-14 09:45:28,212 [DEBUG] Moving from ref0520864.13e3 to ref0520864.13e5 (p=1) 2017-11-14 09:45:28,213 [DEBUG] contig 2017-11-14 09:45:28,213 [DEBUG] who? ref0520864.13e5 ref0520864.13e3 2017-11-14 09:45:28,213 [DEBUG] Grabbing contig between nodes ref0520864.13e5 & ref0520864.13e3 - [trim 0, 0] 2017-11-14 09:45:28,213 [DEBUG] contig 20915 to 23185 2017-11-14 09:45:28,213 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,213 [DEBUG] Moving from ref0520864.13e5 to ref0520864.12e3 (p=1) 2017-11-14 09:45:28,213 [DEBUG] unimproved gap 2017-11-14 09:45:28,213 [DEBUG] Moving from ref0520864.12e3 to ref0520864.12e5 (p=1) 2017-11-14 09:45:28,213 [DEBUG] contig 2017-11-14 09:45:28,213 [DEBUG] who? ref0520864.12e5 ref0520864.12e3 2017-11-14 09:45:28,213 [DEBUG] Grabbing contig between nodes ref0520864.12e5 & ref0520864.12e3 - [trim 0, 0] 2017-11-14 09:45:28,213 [DEBUG] contig 19143 to 20396 2017-11-14 09:45:28,213 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,214 [DEBUG] Moving from ref0520864.12e5 to ref0520864.11e3 (p=1) 2017-11-14 09:45:28,214 [DEBUG] unimproved gap 2017-11-14 09:45:28,214 [DEBUG] Moving from ref0520864.11e3 to ref0520864.11e5 (p=1) 2017-11-14 09:45:28,214 [DEBUG] contig 2017-11-14 09:45:28,214 [DEBUG] who? ref0520864.11e5 ref0520864.11e3 2017-11-14 09:45:28,214 [DEBUG] Grabbing contig between nodes ref0520864.11e5 & ref0520864.11e3 - [trim 0, 0] 2017-11-14 09:45:28,214 [DEBUG] contig 17260 to 18980 2017-11-14 09:45:28,214 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,214 [DEBUG] Moving from ref0520864.11e5 to ref0520864.10e3 (p=1) 2017-11-14 09:45:28,214 [DEBUG] unimproved gap 2017-11-14 09:45:28,214 [DEBUG] Moving from ref0520864.10e3 to ref0520864.10e5 (p=1) 2017-11-14 09:45:28,214 [DEBUG] contig 2017-11-14 09:45:28,214 [DEBUG] who? ref0520864.10e5 ref0520864.10e3 2017-11-14 09:45:28,215 [DEBUG] Grabbing contig between nodes ref0520864.10e5 & ref0520864.10e3 - [trim 0, 0] 2017-11-14 09:45:28,215 [DEBUG] contig 16510 to 16961 2017-11-14 09:45:28,215 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,215 [DEBUG] Moving from ref0520864.10e5 to ref0520864.9e3 (p=1) 2017-11-14 09:45:28,215 [DEBUG] unimproved gap 2017-11-14 09:45:28,215 [DEBUG] Moving from ref0520864.9e3 to ref0520864.9e5 (p=1) 2017-11-14 09:45:28,215 [DEBUG] contig 2017-11-14 09:45:28,215 [DEBUG] who? ref0520864.9e5 ref0520864.9e3 2017-11-14 09:45:28,215 [DEBUG] Grabbing contig between nodes ref0520864.9e5 & ref0520864.9e3 - [trim 0, 0] 2017-11-14 09:45:28,215 [DEBUG] contig 10617 to 16143 2017-11-14 09:45:28,215 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,215 [DEBUG] Moving from ref0520864.9e5 to ref0520864.8e3 (p=1) 2017-11-14 09:45:28,216 [DEBUG] unimproved gap 2017-11-14 09:45:28,216 [DEBUG] Moving from ref0520864.8e3 to ref0520864.8e5 (p=1) 2017-11-14 09:45:28,216 [DEBUG] contig 2017-11-14 09:45:28,216 [DEBUG] who? ref0520864.8e5 ref0520864.8e3 2017-11-14 09:45:28,216 [DEBUG] Grabbing contig between nodes ref0520864.8e5 & ref0520864.8e3 - [trim 0, 0] 2017-11-14 09:45:28,216 [DEBUG] contig 10206 to 10309 2017-11-14 09:45:28,216 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,216 [DEBUG] Moving from ref0520864.8e5 to ref0520864.7e3 (p=1) 2017-11-14 09:45:28,216 [DEBUG] unimproved gap 2017-11-14 09:45:28,216 [DEBUG] Moving from ref0520864.7e3 to ref0520864.7e5 (p=1) 2017-11-14 09:45:28,216 [DEBUG] contig 2017-11-14 09:45:28,216 [DEBUG] who? ref0520864.7e5 ref0520864.7e3 2017-11-14 09:45:28,216 [DEBUG] Grabbing contig between nodes ref0520864.7e5 & ref0520864.7e3 - [trim 0, 0] 2017-11-14 09:45:28,217 [DEBUG] contig 8183 to 9596 2017-11-14 09:45:28,217 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,217 [DEBUG] Moving from ref0520864.7e5 to ref0520864.6e3 (p=1) 2017-11-14 09:45:28,217 [DEBUG] unimproved gap 2017-11-14 09:45:28,217 [DEBUG] Moving from ref0520864.6e3 to ref0520864.6e5 (p=1) 2017-11-14 09:45:28,217 [DEBUG] contig 2017-11-14 09:45:28,217 [DEBUG] who? ref0520864.6e5 ref0520864.6e3 2017-11-14 09:45:28,217 [DEBUG] Grabbing contig between nodes ref0520864.6e5 & ref0520864.6e3 - [trim 0, 0] 2017-11-14 09:45:28,217 [DEBUG] contig 5049 to 8153 2017-11-14 09:45:28,217 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,217 [DEBUG] Moving from ref0520864.6e5 to ref0520864.5e3 (p=1) 2017-11-14 09:45:28,217 [DEBUG] unimproved gap 2017-11-14 09:45:28,217 [DEBUG] Moving from ref0520864.5e3 to ref0520864.5e5 (p=1) 2017-11-14 09:45:28,218 [DEBUG] contig 2017-11-14 09:45:28,218 [DEBUG] who? ref0520864.5e5 ref0520864.5e3 2017-11-14 09:45:28,218 [DEBUG] Grabbing contig between nodes ref0520864.5e5 & ref0520864.5e3 - [trim 0, 0] 2017-11-14 09:45:28,218 [DEBUG] contig 3348 to 4827 2017-11-14 09:45:28,218 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,218 [DEBUG] Moving from ref0520864.5e5 to ref0520864.4e3 (p=1) 2017-11-14 09:45:28,218 [DEBUG] unimproved gap 2017-11-14 09:45:28,218 [DEBUG] Moving from ref0520864.4e3 to ref0520864.4e5 (p=1) 2017-11-14 09:45:28,218 [DEBUG] contig 2017-11-14 09:45:28,218 [DEBUG] who? ref0520864.4e5 ref0520864.4e3 2017-11-14 09:45:28,218 [DEBUG] Grabbing contig between nodes ref0520864.4e5 & ref0520864.4e3 - [trim 0, 0] 2017-11-14 09:45:28,218 [DEBUG] contig 2660 to 3224 2017-11-14 09:45:28,218 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,219 [DEBUG] Moving from ref0520864.4e5 to ref0520864.3e3 (p=1) 2017-11-14 09:45:28,219 [DEBUG] unimproved gap 2017-11-14 09:45:28,219 [DEBUG] Moving from ref0520864.3e3 to ref0520864.3e5 (p=1) 2017-11-14 09:45:28,219 [DEBUG] contig 2017-11-14 09:45:28,219 [DEBUG] who? ref0520864.3e5 ref0520864.3e3 2017-11-14 09:45:28,219 [DEBUG] Grabbing contig between nodes ref0520864.3e5 & ref0520864.3e3 - [trim 0, 0] 2017-11-14 09:45:28,219 [DEBUG] contig 2560 to 2596 2017-11-14 09:45:28,219 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,219 [DEBUG] Moving from ref0520864.3e5 to ref0520864.2e3 (p=1) 2017-11-14 09:45:28,219 [DEBUG] unimproved gap 2017-11-14 09:45:28,219 [DEBUG] Moving from ref0520864.2e3 to ref0520864.2e5 (p=1) 2017-11-14 09:45:28,219 [DEBUG] contig 2017-11-14 09:45:28,219 [DEBUG] who? ref0520864.2e5 ref0520864.2e3 2017-11-14 09:45:28,219 [DEBUG] Grabbing contig between nodes ref0520864.2e5 & ref0520864.2e3 - [trim 0, 0] 2017-11-14 09:45:28,220 [DEBUG] contig 1346 to 2448 2017-11-14 09:45:28,220 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,220 [DEBUG] Moving from ref0520864.2e5 to ref0520864.1e3 (p=1) 2017-11-14 09:45:28,220 [DEBUG] unimproved gap 2017-11-14 09:45:28,220 [DEBUG] Moving from ref0520864.1e3 to ref0520864.1e5 (p=1) 2017-11-14 09:45:28,220 [DEBUG] contig 2017-11-14 09:45:28,220 [DEBUG] who? ref0520864.1e5 ref0520864.1e3 2017-11-14 09:45:28,220 [DEBUG] Grabbing contig between nodes ref0520864.1e5 & ref0520864.1e3 - [trim 0, 0] 2017-11-14 09:45:28,220 [DEBUG] contig 372 to 1029 2017-11-14 09:45:28,220 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,220 [DEBUG] Moving from ref0520864.1e5 to ref0520864.0e3 (p=1) 2017-11-14 09:45:28,220 [DEBUG] unimproved gap 2017-11-14 09:45:28,220 [DEBUG] Moving from ref0520864.0e3 to ref0520864e5 (p=1) 2017-11-14 09:45:28,221 [DEBUG] contig 2017-11-14 09:45:28,221 [DEBUG] who? ref0520864e5 ref0520864.0e3 2017-11-14 09:45:28,221 [DEBUG] Grabbing contig between nodes ref0520864e5 & ref0520864.0e3 - [trim 0, 0] 2017-11-14 09:45:28,221 [DEBUG] contig 0 to 80 2017-11-14 09:45:28,221 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,221 [DEBUG] FirstFlipping 58 2017-11-14 09:45:28,221 [DEBUG] Contig 59 2017-11-14 09:45:28,223 [DEBUG] Moving from ref0022513e5 to ref0022513.0e3 (p=1) 2017-11-14 09:45:28,224 [DEBUG] contig 2017-11-14 09:45:28,224 [DEBUG] who? ref0022513e5 ref0022513.0e3 2017-11-14 09:45:28,224 [DEBUG] Grabbing contig between nodes ref0022513e5 & ref0022513.0e3 - [trim 0, 0] 2017-11-14 09:45:28,224 [DEBUG] contig 0 to 2635 2017-11-14 09:45:28,224 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,224 [DEBUG] Moving from ref0022513.0e3 to ref0022513.1e5 (p=1) 2017-11-14 09:45:28,224 [DEBUG] unimproved gap 2017-11-14 09:45:28,224 [DEBUG] Moving from ref0022513.1e5 to ref0022513.1e3 (p=1) 2017-11-14 09:45:28,224 [DEBUG] contig 2017-11-14 09:45:28,224 [DEBUG] who? ref0022513.1e5 ref0022513.1e3 2017-11-14 09:45:28,224 [DEBUG] Grabbing contig between nodes ref0022513.1e5 & ref0022513.1e3 - [trim 0, 0] 2017-11-14 09:45:28,224 [DEBUG] contig 2690 to 3423 2017-11-14 09:45:28,225 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,225 [DEBUG] Moving from ref0022513.1e3 to ref0022513.2e5 (p=1) 2017-11-14 09:45:28,225 [DEBUG] unimproved gap 2017-11-14 09:45:28,225 [DEBUG] Moving from ref0022513.2e5 to ref0022513.2e3 (p=1) 2017-11-14 09:45:28,225 [DEBUG] contig 2017-11-14 09:45:28,225 [DEBUG] who? ref0022513.2e5 ref0022513.2e3 2017-11-14 09:45:28,225 [DEBUG] Grabbing contig between nodes ref0022513.2e5 & ref0022513.2e3 - [trim 0, 0] 2017-11-14 09:45:28,225 [DEBUG] contig 4067 to 4119 2017-11-14 09:45:28,225 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,225 [DEBUG] Moving from ref0022513.2e3 to ref0022513.3e5 (p=1) 2017-11-14 09:45:28,225 [DEBUG] unimproved gap 2017-11-14 09:45:28,225 [DEBUG] Moving from ref0022513.3e5 to ref0022513.3e3 (p=1) 2017-11-14 09:45:28,225 [DEBUG] contig 2017-11-14 09:45:28,226 [DEBUG] who? ref0022513.3e5 ref0022513.3e3 2017-11-14 09:45:28,226 [DEBUG] Grabbing contig between nodes ref0022513.3e5 & ref0022513.3e3 - [trim 0, 0] 2017-11-14 09:45:28,226 [DEBUG] contig 4740 to 4805 2017-11-14 09:45:28,226 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,226 [DEBUG] Moving from ref0022513.3e3 to ref0022513.4e5 (p=1) 2017-11-14 09:45:28,226 [DEBUG] unimproved gap 2017-11-14 09:45:28,226 [DEBUG] Moving from ref0022513.4e5 to ref0022513.4e3 (p=1) 2017-11-14 09:45:28,226 [DEBUG] contig 2017-11-14 09:45:28,226 [DEBUG] who? ref0022513.4e5 ref0022513.4e3 2017-11-14 09:45:28,226 [DEBUG] Grabbing contig between nodes ref0022513.4e5 & ref0022513.4e3 - [trim 0, 0] 2017-11-14 09:45:28,226 [DEBUG] contig 4845 to 5776 2017-11-14 09:45:28,226 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,226 [DEBUG] Moving from ref0022513.4e3 to ref0022513.5e5 (p=1) 2017-11-14 09:45:28,226 [DEBUG] unimproved gap 2017-11-14 09:45:28,227 [DEBUG] Moving from ref0022513.5e5 to ref0022513.5e3 (p=1) 2017-11-14 09:45:28,227 [DEBUG] contig 2017-11-14 09:45:28,227 [DEBUG] who? ref0022513.5e5 ref0022513.5e3 2017-11-14 09:45:28,227 [DEBUG] Grabbing contig between nodes ref0022513.5e5 & ref0022513.5e3 - [trim 0, 0] 2017-11-14 09:45:28,227 [DEBUG] contig 6083 to 7003 2017-11-14 09:45:28,227 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,227 [DEBUG] Moving from ref0022513.5e3 to ref0022513.6e5 (p=1) 2017-11-14 09:45:28,227 [DEBUG] unimproved gap 2017-11-14 09:45:28,227 [DEBUG] Moving from ref0022513.6e5 to ref0022513.6e3 (p=1) 2017-11-14 09:45:28,227 [DEBUG] contig 2017-11-14 09:45:28,227 [DEBUG] who? ref0022513.6e5 ref0022513.6e3 2017-11-14 09:45:28,227 [DEBUG] Grabbing contig between nodes ref0022513.6e5 & ref0022513.6e3 - [trim 0, 0] 2017-11-14 09:45:28,227 [DEBUG] contig 7319 to 7484 2017-11-14 09:45:28,228 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,228 [DEBUG] Moving from ref0022513.6e3 to ref0022513.7e5 (p=1) 2017-11-14 09:45:28,228 [DEBUG] unimproved gap 2017-11-14 09:45:28,228 [DEBUG] Moving from ref0022513.7e5 to ref0022513.7e3 (p=1) 2017-11-14 09:45:28,228 [DEBUG] contig 2017-11-14 09:45:28,228 [DEBUG] who? ref0022513.7e5 ref0022513.7e3 2017-11-14 09:45:28,228 [DEBUG] Grabbing contig between nodes ref0022513.7e5 & ref0022513.7e3 - [trim 0, 0] 2017-11-14 09:45:28,228 [DEBUG] contig 7540 to 8245 2017-11-14 09:45:28,228 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,228 [DEBUG] Moving from ref0022513.7e3 to ref0022513.8e5 (p=1) 2017-11-14 09:45:28,228 [DEBUG] unimproved gap 2017-11-14 09:45:28,228 [DEBUG] Moving from ref0022513.8e5 to ref0022513.8e3 (p=1) 2017-11-14 09:45:28,228 [DEBUG] contig 2017-11-14 09:45:28,229 [DEBUG] who? ref0022513.8e5 ref0022513.8e3 2017-11-14 09:45:28,229 [DEBUG] Grabbing contig between nodes ref0022513.8e5 & ref0022513.8e3 - [trim 0, 0] 2017-11-14 09:45:28,229 [DEBUG] contig 8784 to 9342 2017-11-14 09:45:28,229 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,229 [DEBUG] Moving from ref0022513.8e3 to ref0022513.9e5 (p=1) 2017-11-14 09:45:28,229 [DEBUG] unimproved gap 2017-11-14 09:45:28,229 [DEBUG] Moving from ref0022513.9e5 to ref0022513.9e3 (p=1) 2017-11-14 09:45:28,229 [DEBUG] contig 2017-11-14 09:45:28,229 [DEBUG] who? ref0022513.9e5 ref0022513.9e3 2017-11-14 09:45:28,229 [DEBUG] Grabbing contig between nodes ref0022513.9e5 & ref0022513.9e3 - [trim 0, 0] 2017-11-14 09:45:28,229 [DEBUG] contig 9489 to 10081 2017-11-14 09:45:28,229 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,229 [DEBUG] Moving from ref0022513.9e3 to ref0022513.10e5 (p=1) 2017-11-14 09:45:28,230 [DEBUG] unimproved gap 2017-11-14 09:45:28,230 [DEBUG] Moving from ref0022513.10e5 to ref0022513.10e3 (p=1) 2017-11-14 09:45:28,230 [DEBUG] contig 2017-11-14 09:45:28,230 [DEBUG] who? ref0022513.10e5 ref0022513.10e3 2017-11-14 09:45:28,230 [DEBUG] Grabbing contig between nodes ref0022513.10e5 & ref0022513.10e3 - [trim 0, 0] 2017-11-14 09:45:28,230 [DEBUG] contig 10130 to 10609 2017-11-14 09:45:28,230 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,230 [DEBUG] Moving from ref0022513.10e3 to ref0022513.11e5 (p=1) 2017-11-14 09:45:28,230 [DEBUG] unimproved gap 2017-11-14 09:45:28,230 [DEBUG] Moving from ref0022513.11e5 to ref0022513.11e3 (p=1) 2017-11-14 09:45:28,230 [DEBUG] contig 2017-11-14 09:45:28,230 [DEBUG] who? ref0022513.11e5 ref0022513.11e3 2017-11-14 09:45:28,230 [DEBUG] Grabbing contig between nodes ref0022513.11e5 & ref0022513.11e3 - [trim 0, 0] 2017-11-14 09:45:28,231 [DEBUG] contig 10681 to 10732 2017-11-14 09:45:28,231 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,231 [DEBUG] Moving from ref0022513.11e3 to ref0022513.12e5 (p=1) 2017-11-14 09:45:28,231 [DEBUG] unimproved gap 2017-11-14 09:45:28,231 [DEBUG] Moving from ref0022513.12e5 to ref0022513.12e3 (p=1) 2017-11-14 09:45:28,231 [DEBUG] contig 2017-11-14 09:45:28,231 [DEBUG] who? ref0022513.12e5 ref0022513.12e3 2017-11-14 09:45:28,231 [DEBUG] Grabbing contig between nodes ref0022513.12e5 & ref0022513.12e3 - [trim 0, 0] 2017-11-14 09:45:28,231 [DEBUG] contig 10827 to 10863 2017-11-14 09:45:28,231 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,231 [DEBUG] Moving from ref0022513.12e3 to ref0022513.13e5 (p=1) 2017-11-14 09:45:28,231 [DEBUG] unimproved gap 2017-11-14 09:45:28,231 [DEBUG] Moving from ref0022513.13e5 to ref0022513.13e3 (p=1) 2017-11-14 09:45:28,232 [DEBUG] contig 2017-11-14 09:45:28,232 [DEBUG] who? ref0022513.13e5 ref0022513.13e3 2017-11-14 09:45:28,232 [DEBUG] Grabbing contig between nodes ref0022513.13e5 & ref0022513.13e3 - [trim 0, 0] 2017-11-14 09:45:28,232 [DEBUG] contig 10993 to 11128 2017-11-14 09:45:28,232 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,232 [DEBUG] Moving from ref0022513.13e3 to ref0022513.14e5 (p=1) 2017-11-14 09:45:28,232 [DEBUG] unimproved gap 2017-11-14 09:45:28,232 [DEBUG] Moving from ref0022513.14e5 to ref0022513.14e3 (p=1) 2017-11-14 09:45:28,232 [DEBUG] contig 2017-11-14 09:45:28,232 [DEBUG] who? ref0022513.14e5 ref0022513.14e3 2017-11-14 09:45:28,232 [DEBUG] Grabbing contig between nodes ref0022513.14e5 & ref0022513.14e3 - [trim 0, 0] 2017-11-14 09:45:28,232 [DEBUG] contig 11347 to 11384 2017-11-14 09:45:28,232 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,233 [DEBUG] Moving from ref0022513.14e3 to ref0022513.15e5 (p=1) 2017-11-14 09:45:28,233 [DEBUG] unimproved gap 2017-11-14 09:45:28,233 [DEBUG] Moving from ref0022513.15e5 to ref0022513.15e3 (p=1) 2017-11-14 09:45:28,233 [DEBUG] contig 2017-11-14 09:45:28,233 [DEBUG] who? ref0022513.15e5 ref0022513.15e3 2017-11-14 09:45:28,233 [DEBUG] Grabbing contig between nodes ref0022513.15e5 & ref0022513.15e3 - [trim 0, 0] 2017-11-14 09:45:28,233 [DEBUG] contig 12000 to 13274 2017-11-14 09:45:28,233 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,233 [DEBUG] Moving from ref0022513.15e3 to ref0022513.16e5 (p=1) 2017-11-14 09:45:28,233 [DEBUG] unimproved gap 2017-11-14 09:45:28,233 [DEBUG] Moving from ref0022513.16e5 to ref0022513.16e3 (p=1) 2017-11-14 09:45:28,233 [DEBUG] contig 2017-11-14 09:45:28,233 [DEBUG] who? ref0022513.16e5 ref0022513.16e3 2017-11-14 09:45:28,233 [DEBUG] Grabbing contig between nodes ref0022513.16e5 & ref0022513.16e3 - [trim 0, 0] 2017-11-14 09:45:28,234 [DEBUG] contig 13393 to 13440 2017-11-14 09:45:28,234 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,234 [DEBUG] Moving from ref0022513.16e3 to ref0022513.17e5 (p=1) 2017-11-14 09:45:28,234 [DEBUG] unimproved gap 2017-11-14 09:45:28,234 [DEBUG] Moving from ref0022513.17e5 to ref0022513.17e3 (p=1) 2017-11-14 09:45:28,234 [DEBUG] contig 2017-11-14 09:45:28,234 [DEBUG] who? ref0022513.17e5 ref0022513.17e3 2017-11-14 09:45:28,234 [DEBUG] Grabbing contig between nodes ref0022513.17e5 & ref0022513.17e3 - [trim 0, 0] 2017-11-14 09:45:28,234 [DEBUG] contig 13750 to 13792 2017-11-14 09:45:28,234 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,234 [DEBUG] Moving from ref0022513.17e3 to ref0022513.18e5 (p=1) 2017-11-14 09:45:28,234 [DEBUG] unimproved gap 2017-11-14 09:45:28,234 [DEBUG] Moving from ref0022513.18e5 to ref0022513e3 (p=1) 2017-11-14 09:45:28,235 [DEBUG] contig 2017-11-14 09:45:28,235 [DEBUG] who? ref0022513.18e5 ref0022513e3 2017-11-14 09:45:28,235 [DEBUG] Grabbing contig between nodes ref0022513.18e5 & ref0022513e3 - [trim 0, 0] 2017-11-14 09:45:28,235 [DEBUG] contig 13933 to 15354 2017-11-14 09:45:28,235 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,235 [DEBUG] Contig 60 2017-11-14 09:45:28,237 [DEBUG] Moving from ref0631664e3 to ref0631664.18e5 (p=1) 2017-11-14 09:45:28,237 [DEBUG] contig 2017-11-14 09:45:28,237 [DEBUG] who? ref0631664.18e5 ref0631664e3 2017-11-14 09:45:28,237 [DEBUG] Grabbing contig between nodes ref0631664.18e5 & ref0631664e3 - [trim 0, 0] 2017-11-14 09:45:28,237 [DEBUG] contig 12022 to 12343 2017-11-14 09:45:28,237 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,238 [DEBUG] Moving from ref0631664.18e5 to ref0631664.17e3 (p=1) 2017-11-14 09:45:28,238 [DEBUG] unimproved gap 2017-11-14 09:45:28,238 [DEBUG] Moving from ref0631664.17e3 to ref0631664.17e5 (p=1) 2017-11-14 09:45:28,238 [DEBUG] contig 2017-11-14 09:45:28,238 [DEBUG] who? ref0631664.17e5 ref0631664.17e3 2017-11-14 09:45:28,238 [DEBUG] Grabbing contig between nodes ref0631664.17e5 & ref0631664.17e3 - [trim 0, 0] 2017-11-14 09:45:28,238 [DEBUG] contig 11665 to 11693 2017-11-14 09:45:28,238 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,238 [DEBUG] Moving from ref0631664.17e5 to ref0631664.16e3 (p=1) 2017-11-14 09:45:28,238 [DEBUG] unimproved gap 2017-11-14 09:45:28,238 [DEBUG] Moving from ref0631664.16e3 to ref0631664.16e5 (p=1) 2017-11-14 09:45:28,238 [DEBUG] contig 2017-11-14 09:45:28,239 [DEBUG] who? ref0631664.16e5 ref0631664.16e3 2017-11-14 09:45:28,239 [DEBUG] Grabbing contig between nodes ref0631664.16e5 & ref0631664.16e3 - [trim 0, 0] 2017-11-14 09:45:28,239 [DEBUG] contig 10430 to 11454 2017-11-14 09:45:28,239 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,239 [DEBUG] Moving from ref0631664.16e5 to ref0631664.15e3 (p=1) 2017-11-14 09:45:28,239 [DEBUG] unimproved gap 2017-11-14 09:45:28,239 [DEBUG] Moving from ref0631664.15e3 to ref0631664.15e5 (p=1) 2017-11-14 09:45:28,239 [DEBUG] contig 2017-11-14 09:45:28,239 [DEBUG] who? ref0631664.15e5 ref0631664.15e3 2017-11-14 09:45:28,239 [DEBUG] Grabbing contig between nodes ref0631664.15e5 & ref0631664.15e3 - [trim 0, 0] 2017-11-14 09:45:28,239 [DEBUG] contig 9975 to 10054 2017-11-14 09:45:28,239 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,239 [DEBUG] Moving from ref0631664.15e5 to ref0631664.14e3 (p=1) 2017-11-14 09:45:28,239 [DEBUG] unimproved gap 2017-11-14 09:45:28,240 [DEBUG] Moving from ref0631664.14e3 to ref0631664.14e5 (p=1) 2017-11-14 09:45:28,240 [DEBUG] contig 2017-11-14 09:45:28,240 [DEBUG] who? ref0631664.14e5 ref0631664.14e3 2017-11-14 09:45:28,240 [DEBUG] Grabbing contig between nodes ref0631664.14e5 & ref0631664.14e3 - [trim 0, 0] 2017-11-14 09:45:28,240 [DEBUG] contig 9374 to 9682 2017-11-14 09:45:28,240 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,240 [DEBUG] Moving from ref0631664.14e5 to ref0631664.13e3 (p=1) 2017-11-14 09:45:28,240 [DEBUG] unimproved gap 2017-11-14 09:45:28,240 [DEBUG] Moving from ref0631664.13e3 to ref0631664.13e5 (p=1) 2017-11-14 09:45:28,240 [DEBUG] contig 2017-11-14 09:45:28,240 [DEBUG] who? ref0631664.13e5 ref0631664.13e3 2017-11-14 09:45:28,240 [DEBUG] Grabbing contig between nodes ref0631664.13e5 & ref0631664.13e3 - [trim 0, 0] 2017-11-14 09:45:28,241 [DEBUG] contig 8368 to 9027 2017-11-14 09:45:28,241 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,241 [DEBUG] Moving from ref0631664.13e5 to ref0631664.12e3 (p=1) 2017-11-14 09:45:28,241 [DEBUG] unimproved gap 2017-11-14 09:45:28,241 [DEBUG] Moving from ref0631664.12e3 to ref0631664.12e5 (p=1) 2017-11-14 09:45:28,241 [DEBUG] contig 2017-11-14 09:45:28,241 [DEBUG] who? ref0631664.12e5 ref0631664.12e3 2017-11-14 09:45:28,241 [DEBUG] Grabbing contig between nodes ref0631664.12e5 & ref0631664.12e3 - [trim 0, 0] 2017-11-14 09:45:28,241 [DEBUG] contig 7513 to 7899 2017-11-14 09:45:28,241 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,241 [DEBUG] Moving from ref0631664.12e5 to ref0631664.11e3 (p=1) 2017-11-14 09:45:28,241 [DEBUG] unimproved gap 2017-11-14 09:45:28,241 [DEBUG] Moving from ref0631664.11e3 to ref0631664.11e5 (p=1) 2017-11-14 09:45:28,242 [DEBUG] contig 2017-11-14 09:45:28,242 [DEBUG] who? ref0631664.11e5 ref0631664.11e3 2017-11-14 09:45:28,242 [DEBUG] Grabbing contig between nodes ref0631664.11e5 & ref0631664.11e3 - [trim 0, 0] 2017-11-14 09:45:28,242 [DEBUG] contig 6952 to 7231 2017-11-14 09:45:28,242 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,242 [DEBUG] Moving from ref0631664.11e5 to ref0631664.10e3 (p=1) 2017-11-14 09:45:28,242 [DEBUG] unimproved gap 2017-11-14 09:45:28,242 [DEBUG] Moving from ref0631664.10e3 to ref0631664.10e5 (p=1) 2017-11-14 09:45:28,242 [DEBUG] contig 2017-11-14 09:45:28,242 [DEBUG] who? ref0631664.10e5 ref0631664.10e3 2017-11-14 09:45:28,242 [DEBUG] Grabbing contig between nodes ref0631664.10e5 & ref0631664.10e3 - [trim 0, 0] 2017-11-14 09:45:28,242 [DEBUG] contig 6369 to 6528 2017-11-14 09:45:28,242 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,242 [DEBUG] Moving from ref0631664.10e5 to ref0631664.9e3 (p=1) 2017-11-14 09:45:28,243 [DEBUG] unimproved gap 2017-11-14 09:45:28,243 [DEBUG] Moving from ref0631664.9e3 to ref0631664.9e5 (p=1) 2017-11-14 09:45:28,243 [DEBUG] contig 2017-11-14 09:45:28,243 [DEBUG] who? ref0631664.9e5 ref0631664.9e3 2017-11-14 09:45:28,243 [DEBUG] Grabbing contig between nodes ref0631664.9e5 & ref0631664.9e3 - [trim 0, 0] 2017-11-14 09:45:28,243 [DEBUG] contig 6174 to 6232 2017-11-14 09:45:28,243 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,243 [DEBUG] Moving from ref0631664.9e5 to ref0631664.8e3 (p=1) 2017-11-14 09:45:28,243 [DEBUG] unimproved gap 2017-11-14 09:45:28,243 [DEBUG] Moving from ref0631664.8e3 to ref0631664.8e5 (p=1) 2017-11-14 09:45:28,243 [DEBUG] contig 2017-11-14 09:45:28,243 [DEBUG] who? ref0631664.8e5 ref0631664.8e3 2017-11-14 09:45:28,243 [DEBUG] Grabbing contig between nodes ref0631664.8e5 & ref0631664.8e3 - [trim 0, 0] 2017-11-14 09:45:28,244 [DEBUG] contig 5653 to 5882 2017-11-14 09:45:28,244 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,244 [DEBUG] Moving from ref0631664.8e5 to ref0631664.7e3 (p=1) 2017-11-14 09:45:28,244 [DEBUG] unimproved gap 2017-11-14 09:45:28,244 [DEBUG] Moving from ref0631664.7e3 to ref0631664.7e5 (p=1) 2017-11-14 09:45:28,244 [DEBUG] contig 2017-11-14 09:45:28,244 [DEBUG] who? ref0631664.7e5 ref0631664.7e3 2017-11-14 09:45:28,244 [DEBUG] Grabbing contig between nodes ref0631664.7e5 & ref0631664.7e3 - [trim 0, 0] 2017-11-14 09:45:28,244 [DEBUG] contig 4938 to 5283 2017-11-14 09:45:28,244 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,244 [DEBUG] Moving from ref0631664.7e5 to ref0631664.6e3 (p=1) 2017-11-14 09:45:28,244 [DEBUG] unimproved gap 2017-11-14 09:45:28,244 [DEBUG] Moving from ref0631664.6e3 to ref0631664.6e5 (p=1) 2017-11-14 09:45:28,245 [DEBUG] contig 2017-11-14 09:45:28,245 [DEBUG] who? ref0631664.6e5 ref0631664.6e3 2017-11-14 09:45:28,245 [DEBUG] Grabbing contig between nodes ref0631664.6e5 & ref0631664.6e3 - [trim 0, 0] 2017-11-14 09:45:28,245 [DEBUG] contig 4430 to 4826 2017-11-14 09:45:28,245 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,245 [DEBUG] Moving from ref0631664.6e5 to ref0631664.5e3 (p=1) 2017-11-14 09:45:28,245 [DEBUG] unimproved gap 2017-11-14 09:45:28,245 [DEBUG] Moving from ref0631664.5e3 to ref0631664.5e5 (p=1) 2017-11-14 09:45:28,245 [DEBUG] contig 2017-11-14 09:45:28,245 [DEBUG] who? ref0631664.5e5 ref0631664.5e3 2017-11-14 09:45:28,245 [DEBUG] Grabbing contig between nodes ref0631664.5e5 & ref0631664.5e3 - [trim 0, 0] 2017-11-14 09:45:28,245 [DEBUG] contig 3407 to 4309 2017-11-14 09:45:28,245 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,246 [DEBUG] Moving from ref0631664.5e5 to ref0631664.4e3 (p=1) 2017-11-14 09:45:28,246 [DEBUG] unimproved gap 2017-11-14 09:45:28,246 [DEBUG] Moving from ref0631664.4e3 to ref0631664.4e5 (p=1) 2017-11-14 09:45:28,246 [DEBUG] contig 2017-11-14 09:45:28,246 [DEBUG] who? ref0631664.4e5 ref0631664.4e3 2017-11-14 09:45:28,246 [DEBUG] Grabbing contig between nodes ref0631664.4e5 & ref0631664.4e3 - [trim 0, 0] 2017-11-14 09:45:28,246 [DEBUG] contig 2875 to 3055 2017-11-14 09:45:28,246 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,246 [DEBUG] Moving from ref0631664.4e5 to ref0631664.3e3 (p=1) 2017-11-14 09:45:28,246 [DEBUG] unimproved gap 2017-11-14 09:45:28,246 [DEBUG] Moving from ref0631664.3e3 to ref0631664.3e5 (p=1) 2017-11-14 09:45:28,246 [DEBUG] contig 2017-11-14 09:45:28,246 [DEBUG] who? ref0631664.3e5 ref0631664.3e3 2017-11-14 09:45:28,247 [DEBUG] Grabbing contig between nodes ref0631664.3e5 & ref0631664.3e3 - [trim 0, 0] 2017-11-14 09:45:28,247 [DEBUG] contig 2428 to 2726 2017-11-14 09:45:28,247 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,247 [DEBUG] Moving from ref0631664.3e5 to ref0631664.2e3 (p=1) 2017-11-14 09:45:28,247 [DEBUG] unimproved gap 2017-11-14 09:45:28,247 [DEBUG] Moving from ref0631664.2e3 to ref0631664.2e5 (p=1) 2017-11-14 09:45:28,247 [DEBUG] contig 2017-11-14 09:45:28,247 [DEBUG] who? ref0631664.2e5 ref0631664.2e3 2017-11-14 09:45:28,247 [DEBUG] Grabbing contig between nodes ref0631664.2e5 & ref0631664.2e3 - [trim 0, 0] 2017-11-14 09:45:28,247 [DEBUG] contig 2118 to 2150 2017-11-14 09:45:28,247 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,247 [DEBUG] Moving from ref0631664.2e5 to ref0631664.1e3 (p=1) 2017-11-14 09:45:28,247 [DEBUG] unimproved gap 2017-11-14 09:45:28,247 [DEBUG] Moving from ref0631664.1e3 to ref0631664.1e5 (p=1) 2017-11-14 09:45:28,248 [DEBUG] contig 2017-11-14 09:45:28,248 [DEBUG] who? ref0631664.1e5 ref0631664.1e3 2017-11-14 09:45:28,248 [DEBUG] Grabbing contig between nodes ref0631664.1e5 & ref0631664.1e3 - [trim 0, 0] 2017-11-14 09:45:28,248 [DEBUG] contig 1733 to 1814 2017-11-14 09:45:28,248 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,248 [DEBUG] Moving from ref0631664.1e5 to ref0631664.0e3 (p=1) 2017-11-14 09:45:28,248 [DEBUG] unimproved gap 2017-11-14 09:45:28,248 [DEBUG] Moving from ref0631664.0e3 to ref0631664e5 (p=1) 2017-11-14 09:45:28,248 [DEBUG] contig 2017-11-14 09:45:28,248 [DEBUG] who? ref0631664e5 ref0631664.0e3 2017-11-14 09:45:28,248 [DEBUG] Grabbing contig between nodes ref0631664e5 & ref0631664.0e3 - [trim 0, 0] 2017-11-14 09:45:28,248 [DEBUG] contig 0 to 1196 2017-11-14 09:45:28,248 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,249 [DEBUG] FirstFlipping 60 2017-11-14 09:45:28,249 [DEBUG] Contig 61 2017-11-14 09:45:28,251 [DEBUG] Moving from ref0181530e3 to ref0181530.18e5 (p=1) 2017-11-14 09:45:28,251 [DEBUG] contig 2017-11-14 09:45:28,251 [DEBUG] who? ref0181530.18e5 ref0181530e3 2017-11-14 09:45:28,251 [DEBUG] Grabbing contig between nodes ref0181530.18e5 & ref0181530e3 - [trim 0, 0] 2017-11-14 09:45:28,251 [DEBUG] contig 21609 to 21711 2017-11-14 09:45:28,251 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,251 [DEBUG] Moving from ref0181530.18e5 to ref0181530.17e3 (p=1) 2017-11-14 09:45:28,251 [DEBUG] unimproved gap 2017-11-14 09:45:28,252 [DEBUG] Moving from ref0181530.17e3 to ref0181530.17e5 (p=1) 2017-11-14 09:45:28,252 [DEBUG] contig 2017-11-14 09:45:28,252 [DEBUG] who? ref0181530.17e5 ref0181530.17e3 2017-11-14 09:45:28,252 [DEBUG] Grabbing contig between nodes ref0181530.17e5 & ref0181530.17e3 - [trim 0, 0] 2017-11-14 09:45:28,252 [DEBUG] contig 21183 to 21278 2017-11-14 09:45:28,252 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,252 [DEBUG] Moving from ref0181530.17e5 to ref0181530.16e3 (p=1) 2017-11-14 09:45:28,252 [DEBUG] unimproved gap 2017-11-14 09:45:28,252 [DEBUG] Moving from ref0181530.16e3 to ref0181530.16e5 (p=1) 2017-11-14 09:45:28,252 [DEBUG] contig 2017-11-14 09:45:28,252 [DEBUG] who? ref0181530.16e5 ref0181530.16e3 2017-11-14 09:45:28,252 [DEBUG] Grabbing contig between nodes ref0181530.16e5 & ref0181530.16e3 - [trim 0, 0] 2017-11-14 09:45:28,252 [DEBUG] contig 20603 to 20649 2017-11-14 09:45:28,253 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,253 [DEBUG] Moving from ref0181530.16e5 to ref0181530.15e3 (p=1) 2017-11-14 09:45:28,253 [DEBUG] unimproved gap 2017-11-14 09:45:28,253 [DEBUG] Moving from ref0181530.15e3 to ref0181530.15e5 (p=1) 2017-11-14 09:45:28,253 [DEBUG] contig 2017-11-14 09:45:28,253 [DEBUG] who? ref0181530.15e5 ref0181530.15e3 2017-11-14 09:45:28,253 [DEBUG] Grabbing contig between nodes ref0181530.15e5 & ref0181530.15e3 - [trim 0, 0] 2017-11-14 09:45:28,253 [DEBUG] contig 20176 to 20433 2017-11-14 09:45:28,253 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,253 [DEBUG] Moving from ref0181530.15e5 to ref0181530.14e3 (p=1) 2017-11-14 09:45:28,253 [DEBUG] unimproved gap 2017-11-14 09:45:28,253 [DEBUG] Moving from ref0181530.14e3 to ref0181530.14e5 (p=1) 2017-11-14 09:45:28,253 [DEBUG] contig 2017-11-14 09:45:28,254 [DEBUG] who? ref0181530.14e5 ref0181530.14e3 2017-11-14 09:45:28,254 [DEBUG] Grabbing contig between nodes ref0181530.14e5 & ref0181530.14e3 - [trim 0, 0] 2017-11-14 09:45:28,254 [DEBUG] contig 19452 to 19951 2017-11-14 09:45:28,254 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,254 [DEBUG] Moving from ref0181530.14e5 to ref0181530.13e3 (p=1) 2017-11-14 09:45:28,254 [DEBUG] unimproved gap 2017-11-14 09:45:28,254 [DEBUG] Moving from ref0181530.13e3 to ref0181530.13e5 (p=1) 2017-11-14 09:45:28,254 [DEBUG] contig 2017-11-14 09:45:28,254 [DEBUG] who? ref0181530.13e5 ref0181530.13e3 2017-11-14 09:45:28,254 [DEBUG] Grabbing contig between nodes ref0181530.13e5 & ref0181530.13e3 - [trim 0, 0] 2017-11-14 09:45:28,254 [DEBUG] contig 19018 to 19187 2017-11-14 09:45:28,254 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,254 [DEBUG] Moving from ref0181530.13e5 to ref0181530.12e3 (p=1) 2017-11-14 09:45:28,255 [DEBUG] unimproved gap 2017-11-14 09:45:28,255 [DEBUG] Moving from ref0181530.12e3 to ref0181530.12e5 (p=1) 2017-11-14 09:45:28,255 [DEBUG] contig 2017-11-14 09:45:28,255 [DEBUG] who? ref0181530.12e5 ref0181530.12e3 2017-11-14 09:45:28,255 [DEBUG] Grabbing contig between nodes ref0181530.12e5 & ref0181530.12e3 - [trim 0, 0] 2017-11-14 09:45:28,255 [DEBUG] contig 18382 to 18425 2017-11-14 09:45:28,255 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,255 [DEBUG] Moving from ref0181530.12e5 to ref0181530.11e3 (p=1) 2017-11-14 09:45:28,255 [DEBUG] unimproved gap 2017-11-14 09:45:28,255 [DEBUG] Moving from ref0181530.11e3 to ref0181530.11e5 (p=1) 2017-11-14 09:45:28,255 [DEBUG] contig 2017-11-14 09:45:28,255 [DEBUG] who? ref0181530.11e5 ref0181530.11e3 2017-11-14 09:45:28,255 [DEBUG] Grabbing contig between nodes ref0181530.11e5 & ref0181530.11e3 - [trim 0, 0] 2017-11-14 09:45:28,255 [DEBUG] contig 18023 to 18071 2017-11-14 09:45:28,256 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,256 [DEBUG] Moving from ref0181530.11e5 to ref0181530.10e3 (p=1) 2017-11-14 09:45:28,256 [DEBUG] unimproved gap 2017-11-14 09:45:28,256 [DEBUG] Moving from ref0181530.10e3 to ref0181530.10e5 (p=1) 2017-11-14 09:45:28,256 [DEBUG] contig 2017-11-14 09:45:28,256 [DEBUG] who? ref0181530.10e5 ref0181530.10e3 2017-11-14 09:45:28,256 [DEBUG] Grabbing contig between nodes ref0181530.10e5 & ref0181530.10e3 - [trim 0, 0] 2017-11-14 09:45:28,256 [DEBUG] contig 16220 to 17626 2017-11-14 09:45:28,256 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,256 [DEBUG] Moving from ref0181530.10e5 to ref0181530.9e3 (p=1) 2017-11-14 09:45:28,256 [DEBUG] unimproved gap 2017-11-14 09:45:28,256 [DEBUG] Moving from ref0181530.9e3 to ref0181530.9e5 (p=1) 2017-11-14 09:45:28,256 [DEBUG] contig 2017-11-14 09:45:28,257 [DEBUG] who? ref0181530.9e5 ref0181530.9e3 2017-11-14 09:45:28,257 [DEBUG] Grabbing contig between nodes ref0181530.9e5 & ref0181530.9e3 - [trim 0, 0] 2017-11-14 09:45:28,257 [DEBUG] contig 10952 to 15629 2017-11-14 09:45:28,257 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,257 [DEBUG] Moving from ref0181530.9e5 to ref0181530.8e3 (p=1) 2017-11-14 09:45:28,257 [DEBUG] unimproved gap 2017-11-14 09:45:28,257 [DEBUG] Moving from ref0181530.8e3 to ref0181530.8e5 (p=1) 2017-11-14 09:45:28,257 [DEBUG] contig 2017-11-14 09:45:28,257 [DEBUG] who? ref0181530.8e5 ref0181530.8e3 2017-11-14 09:45:28,257 [DEBUG] Grabbing contig between nodes ref0181530.8e5 & ref0181530.8e3 - [trim 0, 0] 2017-11-14 09:45:28,257 [DEBUG] contig 10756 to 10835 2017-11-14 09:45:28,257 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,257 [DEBUG] Moving from ref0181530.8e5 to ref0181530.7e3 (p=1) 2017-11-14 09:45:28,257 [DEBUG] unimproved gap 2017-11-14 09:45:28,258 [DEBUG] Moving from ref0181530.7e3 to ref0181530.7e5 (p=1) 2017-11-14 09:45:28,258 [DEBUG] contig 2017-11-14 09:45:28,258 [DEBUG] who? ref0181530.7e5 ref0181530.7e3 2017-11-14 09:45:28,258 [DEBUG] Grabbing contig between nodes ref0181530.7e5 & ref0181530.7e3 - [trim 0, 0] 2017-11-14 09:45:28,258 [DEBUG] contig 10412 to 10448 2017-11-14 09:45:28,258 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,258 [DEBUG] Moving from ref0181530.7e5 to ref0181530.6e3 (p=1) 2017-11-14 09:45:28,258 [DEBUG] unimproved gap 2017-11-14 09:45:28,258 [DEBUG] Moving from ref0181530.6e3 to ref0181530.6e5 (p=1) 2017-11-14 09:45:28,258 [DEBUG] contig 2017-11-14 09:45:28,258 [DEBUG] who? ref0181530.6e5 ref0181530.6e3 2017-11-14 09:45:28,258 [DEBUG] Grabbing contig between nodes ref0181530.6e5 & ref0181530.6e3 - [trim 0, 0] 2017-11-14 09:45:28,259 [DEBUG] contig 7458 to 10276 2017-11-14 09:45:28,259 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,259 [DEBUG] Moving from ref0181530.6e5 to ref0181530.5e3 (p=1) 2017-11-14 09:45:28,259 [DEBUG] unimproved gap 2017-11-14 09:45:28,259 [DEBUG] Moving from ref0181530.5e3 to ref0181530.5e5 (p=1) 2017-11-14 09:45:28,259 [DEBUG] contig 2017-11-14 09:45:28,259 [DEBUG] who? ref0181530.5e5 ref0181530.5e3 2017-11-14 09:45:28,259 [DEBUG] Grabbing contig between nodes ref0181530.5e5 & ref0181530.5e3 - [trim 0, 0] 2017-11-14 09:45:28,259 [DEBUG] contig 7201 to 7239 2017-11-14 09:45:28,259 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,259 [DEBUG] Moving from ref0181530.5e5 to ref0181530.4e3 (p=1) 2017-11-14 09:45:28,259 [DEBUG] unimproved gap 2017-11-14 09:45:28,259 [DEBUG] Moving from ref0181530.4e3 to ref0181530.4e5 (p=1) 2017-11-14 09:45:28,260 [DEBUG] contig 2017-11-14 09:45:28,260 [DEBUG] who? ref0181530.4e5 ref0181530.4e3 2017-11-14 09:45:28,260 [DEBUG] Grabbing contig between nodes ref0181530.4e5 & ref0181530.4e3 - [trim 0, 0] 2017-11-14 09:45:28,260 [DEBUG] contig 5651 to 6932 2017-11-14 09:45:28,260 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,260 [DEBUG] Moving from ref0181530.4e5 to ref0181530.3e3 (p=1) 2017-11-14 09:45:28,260 [DEBUG] unimproved gap 2017-11-14 09:45:28,260 [DEBUG] Moving from ref0181530.3e3 to ref0181530.3e5 (p=1) 2017-11-14 09:45:28,260 [DEBUG] contig 2017-11-14 09:45:28,260 [DEBUG] who? ref0181530.3e5 ref0181530.3e3 2017-11-14 09:45:28,260 [DEBUG] Grabbing contig between nodes ref0181530.3e5 & ref0181530.3e3 - [trim 0, 0] 2017-11-14 09:45:28,260 [DEBUG] contig 5122 to 5596 2017-11-14 09:45:28,260 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,261 [DEBUG] Moving from ref0181530.3e5 to ref0181530.2e3 (p=1) 2017-11-14 09:45:28,261 [DEBUG] unimproved gap 2017-11-14 09:45:28,261 [DEBUG] Moving from ref0181530.2e3 to ref0181530.2e5 (p=1) 2017-11-14 09:45:28,261 [DEBUG] contig 2017-11-14 09:45:28,261 [DEBUG] who? ref0181530.2e5 ref0181530.2e3 2017-11-14 09:45:28,261 [DEBUG] Grabbing contig between nodes ref0181530.2e5 & ref0181530.2e3 - [trim 0, 0] 2017-11-14 09:45:28,261 [DEBUG] contig 1423 to 4881 2017-11-14 09:45:28,261 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,261 [DEBUG] Moving from ref0181530.2e5 to ref0181530.1e3 (p=1) 2017-11-14 09:45:28,261 [DEBUG] unimproved gap 2017-11-14 09:45:28,261 [DEBUG] Moving from ref0181530.1e3 to ref0181530.1e5 (p=1) 2017-11-14 09:45:28,261 [DEBUG] contig 2017-11-14 09:45:28,262 [DEBUG] who? ref0181530.1e5 ref0181530.1e3 2017-11-14 09:45:28,262 [DEBUG] Grabbing contig between nodes ref0181530.1e5 & ref0181530.1e3 - [trim 0, 0] 2017-11-14 09:45:28,262 [DEBUG] contig 1098 to 1171 2017-11-14 09:45:28,262 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,262 [DEBUG] Moving from ref0181530.1e5 to ref0181530.0e3 (p=1) 2017-11-14 09:45:28,262 [DEBUG] unimproved gap 2017-11-14 09:45:28,262 [DEBUG] Moving from ref0181530.0e3 to ref0181530e5 (p=1) 2017-11-14 09:45:28,262 [DEBUG] contig 2017-11-14 09:45:28,262 [DEBUG] who? ref0181530e5 ref0181530.0e3 2017-11-14 09:45:28,262 [DEBUG] Grabbing contig between nodes ref0181530e5 & ref0181530.0e3 - [trim 0, 0] 2017-11-14 09:45:28,262 [DEBUG] contig 0 to 831 2017-11-14 09:45:28,262 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,262 [DEBUG] FirstFlipping 61 2017-11-14 09:45:28,263 [DEBUG] Contig 62 2017-11-14 09:45:28,265 [DEBUG] Moving from ref0515254e5 to ref0515254.0e3 (p=1) 2017-11-14 09:45:28,265 [DEBUG] contig 2017-11-14 09:45:28,265 [DEBUG] who? ref0515254e5 ref0515254.0e3 2017-11-14 09:45:28,265 [DEBUG] Grabbing contig between nodes ref0515254e5 & ref0515254.0e3 - [trim 0, 0] 2017-11-14 09:45:28,265 [DEBUG] contig 0 to 98 2017-11-14 09:45:28,265 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,265 [DEBUG] Moving from ref0515254.0e3 to ref0515254.1e5 (p=1) 2017-11-14 09:45:28,266 [DEBUG] unimproved gap 2017-11-14 09:45:28,266 [DEBUG] Moving from ref0515254.1e5 to ref0515254.1e3 (p=1) 2017-11-14 09:45:28,266 [DEBUG] contig 2017-11-14 09:45:28,266 [DEBUG] who? ref0515254.1e5 ref0515254.1e3 2017-11-14 09:45:28,266 [DEBUG] Grabbing contig between nodes ref0515254.1e5 & ref0515254.1e3 - [trim 0, 0] 2017-11-14 09:45:28,266 [DEBUG] contig 654 to 1106 2017-11-14 09:45:28,266 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,266 [DEBUG] Moving from ref0515254.1e3 to ref0515254.2e5 (p=1) 2017-11-14 09:45:28,266 [DEBUG] unimproved gap 2017-11-14 09:45:28,266 [DEBUG] Moving from ref0515254.2e5 to ref0515254.2e3 (p=1) 2017-11-14 09:45:28,266 [DEBUG] contig 2017-11-14 09:45:28,266 [DEBUG] who? ref0515254.2e5 ref0515254.2e3 2017-11-14 09:45:28,266 [DEBUG] Grabbing contig between nodes ref0515254.2e5 & ref0515254.2e3 - [trim 0, 0] 2017-11-14 09:45:28,267 [DEBUG] contig 1191 to 1463 2017-11-14 09:45:28,267 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,267 [DEBUG] Moving from ref0515254.2e3 to ref0515254.3e5 (p=1) 2017-11-14 09:45:28,267 [DEBUG] unimproved gap 2017-11-14 09:45:28,267 [DEBUG] Moving from ref0515254.3e5 to ref0515254.3e3 (p=1) 2017-11-14 09:45:28,267 [DEBUG] contig 2017-11-14 09:45:28,267 [DEBUG] who? ref0515254.3e5 ref0515254.3e3 2017-11-14 09:45:28,267 [DEBUG] Grabbing contig between nodes ref0515254.3e5 & ref0515254.3e3 - [trim 0, 0] 2017-11-14 09:45:28,267 [DEBUG] contig 1649 to 3641 2017-11-14 09:45:28,267 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,267 [DEBUG] Moving from ref0515254.3e3 to ref0515254.4e5 (p=1) 2017-11-14 09:45:28,267 [DEBUG] unimproved gap 2017-11-14 09:45:28,267 [DEBUG] Moving from ref0515254.4e5 to ref0515254.4e3 (p=1) 2017-11-14 09:45:28,268 [DEBUG] contig 2017-11-14 09:45:28,268 [DEBUG] who? ref0515254.4e5 ref0515254.4e3 2017-11-14 09:45:28,268 [DEBUG] Grabbing contig between nodes ref0515254.4e5 & ref0515254.4e3 - [trim 0, 0] 2017-11-14 09:45:28,268 [DEBUG] contig 3846 to 4187 2017-11-14 09:45:28,268 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,268 [DEBUG] Moving from ref0515254.4e3 to ref0515254.5e5 (p=1) 2017-11-14 09:45:28,268 [DEBUG] unimproved gap 2017-11-14 09:45:28,268 [DEBUG] Moving from ref0515254.5e5 to ref0515254.5e3 (p=1) 2017-11-14 09:45:28,268 [DEBUG] contig 2017-11-14 09:45:28,268 [DEBUG] who? ref0515254.5e5 ref0515254.5e3 2017-11-14 09:45:28,268 [DEBUG] Grabbing contig between nodes ref0515254.5e5 & ref0515254.5e3 - [trim 0, 0] 2017-11-14 09:45:28,268 [DEBUG] contig 4259 to 4511 2017-11-14 09:45:28,269 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,269 [DEBUG] Moving from ref0515254.5e3 to ref0515254.6e5 (p=1) 2017-11-14 09:45:28,269 [DEBUG] unimproved gap 2017-11-14 09:45:28,269 [DEBUG] Moving from ref0515254.6e5 to ref0515254.6e3 (p=1) 2017-11-14 09:45:28,269 [DEBUG] contig 2017-11-14 09:45:28,269 [DEBUG] who? ref0515254.6e5 ref0515254.6e3 2017-11-14 09:45:28,269 [DEBUG] Grabbing contig between nodes ref0515254.6e5 & ref0515254.6e3 - [trim 0, 0] 2017-11-14 09:45:28,269 [DEBUG] contig 4565 to 5887 2017-11-14 09:45:28,269 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,269 [DEBUG] Moving from ref0515254.6e3 to ref0515254.7e5 (p=1) 2017-11-14 09:45:28,269 [DEBUG] unimproved gap 2017-11-14 09:45:28,269 [DEBUG] Moving from ref0515254.7e5 to ref0515254.7e3 (p=1) 2017-11-14 09:45:28,269 [DEBUG] contig 2017-11-14 09:45:28,270 [DEBUG] who? ref0515254.7e5 ref0515254.7e3 2017-11-14 09:45:28,270 [DEBUG] Grabbing contig between nodes ref0515254.7e5 & ref0515254.7e3 - [trim 0, 0] 2017-11-14 09:45:28,270 [DEBUG] contig 6166 to 6751 2017-11-14 09:45:28,270 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,270 [DEBUG] Moving from ref0515254.7e3 to ref0515254.8e5 (p=1) 2017-11-14 09:45:28,270 [DEBUG] unimproved gap 2017-11-14 09:45:28,270 [DEBUG] Moving from ref0515254.8e5 to ref0515254.8e3 (p=1) 2017-11-14 09:45:28,270 [DEBUG] contig 2017-11-14 09:45:28,270 [DEBUG] who? ref0515254.8e5 ref0515254.8e3 2017-11-14 09:45:28,270 [DEBUG] Grabbing contig between nodes ref0515254.8e5 & ref0515254.8e3 - [trim 0, 0] 2017-11-14 09:45:28,270 [DEBUG] contig 6929 to 7355 2017-11-14 09:45:28,270 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,270 [DEBUG] Moving from ref0515254.8e3 to ref0515254.9e5 (p=1) 2017-11-14 09:45:28,271 [DEBUG] unimproved gap 2017-11-14 09:45:28,271 [DEBUG] Moving from ref0515254.9e5 to ref0515254.9e3 (p=1) 2017-11-14 09:45:28,271 [DEBUG] contig 2017-11-14 09:45:28,271 [DEBUG] who? ref0515254.9e5 ref0515254.9e3 2017-11-14 09:45:28,271 [DEBUG] Grabbing contig between nodes ref0515254.9e5 & ref0515254.9e3 - [trim 0, 0] 2017-11-14 09:45:28,271 [DEBUG] contig 7683 to 7944 2017-11-14 09:45:28,271 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,271 [DEBUG] Moving from ref0515254.9e3 to ref0515254.10e5 (p=1) 2017-11-14 09:45:28,271 [DEBUG] unimproved gap 2017-11-14 09:45:28,271 [DEBUG] Moving from ref0515254.10e5 to ref0515254.10e3 (p=1) 2017-11-14 09:45:28,271 [DEBUG] contig 2017-11-14 09:45:28,271 [DEBUG] who? ref0515254.10e5 ref0515254.10e3 2017-11-14 09:45:28,271 [DEBUG] Grabbing contig between nodes ref0515254.10e5 & ref0515254.10e3 - [trim 0, 0] 2017-11-14 09:45:28,272 [DEBUG] contig 8406 to 8561 2017-11-14 09:45:28,272 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,272 [DEBUG] Moving from ref0515254.10e3 to ref0515254.11e5 (p=1) 2017-11-14 09:45:28,272 [DEBUG] unimproved gap 2017-11-14 09:45:28,272 [DEBUG] Moving from ref0515254.11e5 to ref0515254.11e3 (p=1) 2017-11-14 09:45:28,272 [DEBUG] contig 2017-11-14 09:45:28,272 [DEBUG] who? ref0515254.11e5 ref0515254.11e3 2017-11-14 09:45:28,272 [DEBUG] Grabbing contig between nodes ref0515254.11e5 & ref0515254.11e3 - [trim 0, 0] 2017-11-14 09:45:28,272 [DEBUG] contig 8804 to 9586 2017-11-14 09:45:28,272 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,272 [DEBUG] Moving from ref0515254.11e3 to ref0515254.12e5 (p=1) 2017-11-14 09:45:28,272 [DEBUG] unimproved gap 2017-11-14 09:45:28,272 [DEBUG] Moving from ref0515254.12e5 to ref0515254.12e3 (p=1) 2017-11-14 09:45:28,273 [DEBUG] contig 2017-11-14 09:45:28,273 [DEBUG] who? ref0515254.12e5 ref0515254.12e3 2017-11-14 09:45:28,273 [DEBUG] Grabbing contig between nodes ref0515254.12e5 & ref0515254.12e3 - [trim 0, 0] 2017-11-14 09:45:28,273 [DEBUG] contig 9631 to 9882 2017-11-14 09:45:28,273 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,273 [DEBUG] Moving from ref0515254.12e3 to ref0515254.13e5 (p=1) 2017-11-14 09:45:28,273 [DEBUG] unimproved gap 2017-11-14 09:45:28,273 [DEBUG] Moving from ref0515254.13e5 to ref0515254.13e3 (p=1) 2017-11-14 09:45:28,273 [DEBUG] contig 2017-11-14 09:45:28,273 [DEBUG] who? ref0515254.13e5 ref0515254.13e3 2017-11-14 09:45:28,273 [DEBUG] Grabbing contig between nodes ref0515254.13e5 & ref0515254.13e3 - [trim 0, 0] 2017-11-14 09:45:28,273 [DEBUG] contig 9989 to 10647 2017-11-14 09:45:28,273 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,274 [DEBUG] Moving from ref0515254.13e3 to ref0515254.14e5 (p=1) 2017-11-14 09:45:28,274 [DEBUG] unimproved gap 2017-11-14 09:45:28,274 [DEBUG] Moving from ref0515254.14e5 to ref0515254.14e3 (p=1) 2017-11-14 09:45:28,274 [DEBUG] contig 2017-11-14 09:45:28,274 [DEBUG] who? ref0515254.14e5 ref0515254.14e3 2017-11-14 09:45:28,274 [DEBUG] Grabbing contig between nodes ref0515254.14e5 & ref0515254.14e3 - [trim 0, 0] 2017-11-14 09:45:28,274 [DEBUG] contig 10782 to 11036 2017-11-14 09:45:28,274 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,274 [DEBUG] Moving from ref0515254.14e3 to ref0515254.15e5 (p=1) 2017-11-14 09:45:28,274 [DEBUG] unimproved gap 2017-11-14 09:45:28,274 [DEBUG] Moving from ref0515254.15e5 to ref0515254.15e3 (p=1) 2017-11-14 09:45:28,274 [DEBUG] contig 2017-11-14 09:45:28,275 [DEBUG] who? ref0515254.15e5 ref0515254.15e3 2017-11-14 09:45:28,275 [DEBUG] Grabbing contig between nodes ref0515254.15e5 & ref0515254.15e3 - [trim 0, 0] 2017-11-14 09:45:28,275 [DEBUG] contig 11107 to 11492 2017-11-14 09:45:28,275 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,275 [DEBUG] Moving from ref0515254.15e3 to ref0515254.16e5 (p=1) 2017-11-14 09:45:28,275 [DEBUG] unimproved gap 2017-11-14 09:45:28,275 [DEBUG] Moving from ref0515254.16e5 to ref0515254.16e3 (p=1) 2017-11-14 09:45:28,275 [DEBUG] contig 2017-11-14 09:45:28,275 [DEBUG] who? ref0515254.16e5 ref0515254.16e3 2017-11-14 09:45:28,275 [DEBUG] Grabbing contig between nodes ref0515254.16e5 & ref0515254.16e3 - [trim 0, 0] 2017-11-14 09:45:28,275 [DEBUG] contig 11755 to 11826 2017-11-14 09:45:28,275 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,275 [DEBUG] Moving from ref0515254.16e3 to ref0515254.17e5 (p=1) 2017-11-14 09:45:28,276 [DEBUG] unimproved gap 2017-11-14 09:45:28,276 [DEBUG] Moving from ref0515254.17e5 to ref0515254.17e3 (p=1) 2017-11-14 09:45:28,276 [DEBUG] contig 2017-11-14 09:45:28,276 [DEBUG] who? ref0515254.17e5 ref0515254.17e3 2017-11-14 09:45:28,276 [DEBUG] Grabbing contig between nodes ref0515254.17e5 & ref0515254.17e3 - [trim 0, 0] 2017-11-14 09:45:28,276 [DEBUG] contig 12454 to 13024 2017-11-14 09:45:28,276 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,276 [DEBUG] Moving from ref0515254.17e3 to ref0515254.18e5 (p=1) 2017-11-14 09:45:28,276 [DEBUG] unimproved gap 2017-11-14 09:45:28,276 [DEBUG] Moving from ref0515254.18e5 to ref0515254e3 (p=1) 2017-11-14 09:45:28,276 [DEBUG] contig 2017-11-14 09:45:28,276 [DEBUG] who? ref0515254.18e5 ref0515254e3 2017-11-14 09:45:28,277 [DEBUG] Grabbing contig between nodes ref0515254.18e5 & ref0515254e3 - [trim 0, 0] 2017-11-14 09:45:28,277 [DEBUG] contig 13194 to 14550 2017-11-14 09:45:28,277 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,277 [DEBUG] Contig 63 2017-11-14 09:45:28,279 [DEBUG] Moving from ref0677792e3 to ref0677792.18e5 (p=1) 2017-11-14 09:45:28,279 [DEBUG] contig 2017-11-14 09:45:28,279 [DEBUG] who? ref0677792.18e5 ref0677792e3 2017-11-14 09:45:28,279 [DEBUG] Grabbing contig between nodes ref0677792.18e5 & ref0677792e3 - [trim 0, 0] 2017-11-14 09:45:28,279 [DEBUG] contig 14381 to 14555 2017-11-14 09:45:28,279 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,280 [DEBUG] Moving from ref0677792.18e5 to ref0677792.17e3 (p=1) 2017-11-14 09:45:28,280 [DEBUG] unimproved gap 2017-11-14 09:45:28,280 [DEBUG] Moving from ref0677792.17e3 to ref0677792.17e5 (p=1) 2017-11-14 09:45:28,280 [DEBUG] contig 2017-11-14 09:45:28,280 [DEBUG] who? ref0677792.17e5 ref0677792.17e3 2017-11-14 09:45:28,280 [DEBUG] Grabbing contig between nodes ref0677792.17e5 & ref0677792.17e3 - [trim 0, 0] 2017-11-14 09:45:28,280 [DEBUG] contig 14009 to 14219 2017-11-14 09:45:28,280 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,280 [DEBUG] Moving from ref0677792.17e5 to ref0677792.16e3 (p=1) 2017-11-14 09:45:28,280 [DEBUG] unimproved gap 2017-11-14 09:45:28,280 [DEBUG] Moving from ref0677792.16e3 to ref0677792.16e5 (p=1) 2017-11-14 09:45:28,280 [DEBUG] contig 2017-11-14 09:45:28,280 [DEBUG] who? ref0677792.16e5 ref0677792.16e3 2017-11-14 09:45:28,281 [DEBUG] Grabbing contig between nodes ref0677792.16e5 & ref0677792.16e3 - [trim 0, 0] 2017-11-14 09:45:28,281 [DEBUG] contig 13012 to 13972 2017-11-14 09:45:28,281 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,281 [DEBUG] Moving from ref0677792.16e5 to ref0677792.15e3 (p=1) 2017-11-14 09:45:28,281 [DEBUG] unimproved gap 2017-11-14 09:45:28,281 [DEBUG] Moving from ref0677792.15e3 to ref0677792.15e5 (p=1) 2017-11-14 09:45:28,281 [DEBUG] contig 2017-11-14 09:45:28,281 [DEBUG] who? ref0677792.15e5 ref0677792.15e3 2017-11-14 09:45:28,281 [DEBUG] Grabbing contig between nodes ref0677792.15e5 & ref0677792.15e3 - [trim 0, 0] 2017-11-14 09:45:28,281 [DEBUG] contig 12127 to 12536 2017-11-14 09:45:28,281 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,281 [DEBUG] Moving from ref0677792.15e5 to ref0677792.14e3 (p=1) 2017-11-14 09:45:28,281 [DEBUG] unimproved gap 2017-11-14 09:45:28,282 [DEBUG] Moving from ref0677792.14e3 to ref0677792.14e5 (p=1) 2017-11-14 09:45:28,282 [DEBUG] contig 2017-11-14 09:45:28,282 [DEBUG] who? ref0677792.14e5 ref0677792.14e3 2017-11-14 09:45:28,282 [DEBUG] Grabbing contig between nodes ref0677792.14e5 & ref0677792.14e3 - [trim 0, 0] 2017-11-14 09:45:28,282 [DEBUG] contig 10468 to 11765 2017-11-14 09:45:28,282 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,282 [DEBUG] Moving from ref0677792.14e5 to ref0677792.13e3 (p=1) 2017-11-14 09:45:28,282 [DEBUG] unimproved gap 2017-11-14 09:45:28,282 [DEBUG] Moving from ref0677792.13e3 to ref0677792.13e5 (p=1) 2017-11-14 09:45:28,282 [DEBUG] contig 2017-11-14 09:45:28,282 [DEBUG] who? ref0677792.13e5 ref0677792.13e3 2017-11-14 09:45:28,282 [DEBUG] Grabbing contig between nodes ref0677792.13e5 & ref0677792.13e3 - [trim 0, 0] 2017-11-14 09:45:28,282 [DEBUG] contig 10316 to 10420 2017-11-14 09:45:28,283 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,283 [DEBUG] Moving from ref0677792.13e5 to ref0677792.12e3 (p=1) 2017-11-14 09:45:28,283 [DEBUG] unimproved gap 2017-11-14 09:45:28,283 [DEBUG] Moving from ref0677792.12e3 to ref0677792.12e5 (p=1) 2017-11-14 09:45:28,283 [DEBUG] contig 2017-11-14 09:45:28,283 [DEBUG] who? ref0677792.12e5 ref0677792.12e3 2017-11-14 09:45:28,283 [DEBUG] Grabbing contig between nodes ref0677792.12e5 & ref0677792.12e3 - [trim 0, 0] 2017-11-14 09:45:28,283 [DEBUG] contig 9272 to 10242 2017-11-14 09:45:28,283 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,283 [DEBUG] Moving from ref0677792.12e5 to ref0677792.11e3 (p=1) 2017-11-14 09:45:28,283 [DEBUG] unimproved gap 2017-11-14 09:45:28,283 [DEBUG] Moving from ref0677792.11e3 to ref0677792.11e5 (p=1) 2017-11-14 09:45:28,283 [DEBUG] contig 2017-11-14 09:45:28,284 [DEBUG] who? ref0677792.11e5 ref0677792.11e3 2017-11-14 09:45:28,284 [DEBUG] Grabbing contig between nodes ref0677792.11e5 & ref0677792.11e3 - [trim 0, 0] 2017-11-14 09:45:28,284 [DEBUG] contig 8761 to 9166 2017-11-14 09:45:28,284 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,284 [DEBUG] Moving from ref0677792.11e5 to ref0677792.10e3 (p=1) 2017-11-14 09:45:28,284 [DEBUG] unimproved gap 2017-11-14 09:45:28,284 [DEBUG] Moving from ref0677792.10e3 to ref0677792.10e5 (p=1) 2017-11-14 09:45:28,284 [DEBUG] contig 2017-11-14 09:45:28,284 [DEBUG] who? ref0677792.10e5 ref0677792.10e3 2017-11-14 09:45:28,284 [DEBUG] Grabbing contig between nodes ref0677792.10e5 & ref0677792.10e3 - [trim 0, 0] 2017-11-14 09:45:28,284 [DEBUG] contig 8602 to 8636 2017-11-14 09:45:28,284 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,284 [DEBUG] Moving from ref0677792.10e5 to ref0677792.9e3 (p=1) 2017-11-14 09:45:28,285 [DEBUG] unimproved gap 2017-11-14 09:45:28,285 [DEBUG] Moving from ref0677792.9e3 to ref0677792.9e5 (p=1) 2017-11-14 09:45:28,285 [DEBUG] contig 2017-11-14 09:45:28,285 [DEBUG] who? ref0677792.9e5 ref0677792.9e3 2017-11-14 09:45:28,285 [DEBUG] Grabbing contig between nodes ref0677792.9e5 & ref0677792.9e3 - [trim 0, 0] 2017-11-14 09:45:28,285 [DEBUG] contig 8104 to 8519 2017-11-14 09:45:28,285 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,285 [DEBUG] Moving from ref0677792.9e5 to ref0677792.8e3 (p=1) 2017-11-14 09:45:28,285 [DEBUG] unimproved gap 2017-11-14 09:45:28,285 [DEBUG] Moving from ref0677792.8e3 to ref0677792.8e5 (p=1) 2017-11-14 09:45:28,285 [DEBUG] contig 2017-11-14 09:45:28,285 [DEBUG] who? ref0677792.8e5 ref0677792.8e3 2017-11-14 09:45:28,285 [DEBUG] Grabbing contig between nodes ref0677792.8e5 & ref0677792.8e3 - [trim 0, 0] 2017-11-14 09:45:28,285 [DEBUG] contig 7473 to 7511 2017-11-14 09:45:28,286 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,286 [DEBUG] Moving from ref0677792.8e5 to ref0677792.7e3 (p=1) 2017-11-14 09:45:28,286 [DEBUG] unimproved gap 2017-11-14 09:45:28,286 [DEBUG] Moving from ref0677792.7e3 to ref0677792.7e5 (p=1) 2017-11-14 09:45:28,286 [DEBUG] contig 2017-11-14 09:45:28,286 [DEBUG] who? ref0677792.7e5 ref0677792.7e3 2017-11-14 09:45:28,286 [DEBUG] Grabbing contig between nodes ref0677792.7e5 & ref0677792.7e3 - [trim 0, 0] 2017-11-14 09:45:28,286 [DEBUG] contig 7085 to 7368 2017-11-14 09:45:28,286 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,286 [DEBUG] Moving from ref0677792.7e5 to ref0677792.6e3 (p=1) 2017-11-14 09:45:28,286 [DEBUG] unimproved gap 2017-11-14 09:45:28,286 [DEBUG] Moving from ref0677792.6e3 to ref0677792.6e5 (p=1) 2017-11-14 09:45:28,286 [DEBUG] contig 2017-11-14 09:45:28,287 [DEBUG] who? ref0677792.6e5 ref0677792.6e3 2017-11-14 09:45:28,287 [DEBUG] Grabbing contig between nodes ref0677792.6e5 & ref0677792.6e3 - [trim 0, 0] 2017-11-14 09:45:28,287 [DEBUG] contig 2812 to 6906 2017-11-14 09:45:28,287 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,287 [DEBUG] Moving from ref0677792.6e5 to ref0677792.5e3 (p=1) 2017-11-14 09:45:28,287 [DEBUG] unimproved gap 2017-11-14 09:45:28,287 [DEBUG] Moving from ref0677792.5e3 to ref0677792.5e5 (p=1) 2017-11-14 09:45:28,287 [DEBUG] contig 2017-11-14 09:45:28,287 [DEBUG] who? ref0677792.5e5 ref0677792.5e3 2017-11-14 09:45:28,287 [DEBUG] Grabbing contig between nodes ref0677792.5e5 & ref0677792.5e3 - [trim 0, 0] 2017-11-14 09:45:28,287 [DEBUG] contig 2212 to 2782 2017-11-14 09:45:28,287 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,287 [DEBUG] Moving from ref0677792.5e5 to ref0677792.4e3 (p=1) 2017-11-14 09:45:28,288 [DEBUG] unimproved gap 2017-11-14 09:45:28,288 [DEBUG] Moving from ref0677792.4e3 to ref0677792.4e5 (p=1) 2017-11-14 09:45:28,288 [DEBUG] contig 2017-11-14 09:45:28,288 [DEBUG] who? ref0677792.4e5 ref0677792.4e3 2017-11-14 09:45:28,288 [DEBUG] Grabbing contig between nodes ref0677792.4e5 & ref0677792.4e3 - [trim 0, 0] 2017-11-14 09:45:28,288 [DEBUG] contig 2053 to 2105 2017-11-14 09:45:28,288 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,288 [DEBUG] Moving from ref0677792.4e5 to ref0677792.3e3 (p=1) 2017-11-14 09:45:28,288 [DEBUG] unimproved gap 2017-11-14 09:45:28,288 [DEBUG] Moving from ref0677792.3e3 to ref0677792.3e5 (p=1) 2017-11-14 09:45:28,288 [DEBUG] contig 2017-11-14 09:45:28,288 [DEBUG] who? ref0677792.3e5 ref0677792.3e3 2017-11-14 09:45:28,288 [DEBUG] Grabbing contig between nodes ref0677792.3e5 & ref0677792.3e3 - [trim 0, 0] 2017-11-14 09:45:28,289 [DEBUG] contig 1929 to 1969 2017-11-14 09:45:28,289 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,289 [DEBUG] Moving from ref0677792.3e5 to ref0677792.2e3 (p=1) 2017-11-14 09:45:28,289 [DEBUG] unimproved gap 2017-11-14 09:45:28,289 [DEBUG] Moving from ref0677792.2e3 to ref0677792.2e5 (p=1) 2017-11-14 09:45:28,289 [DEBUG] contig 2017-11-14 09:45:28,289 [DEBUG] who? ref0677792.2e5 ref0677792.2e3 2017-11-14 09:45:28,289 [DEBUG] Grabbing contig between nodes ref0677792.2e5 & ref0677792.2e3 - [trim 0, 0] 2017-11-14 09:45:28,289 [DEBUG] contig 1688 to 1722 2017-11-14 09:45:28,289 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,289 [DEBUG] Moving from ref0677792.2e5 to ref0677792.1e3 (p=1) 2017-11-14 09:45:28,289 [DEBUG] unimproved gap 2017-11-14 09:45:28,289 [DEBUG] Moving from ref0677792.1e3 to ref0677792.1e5 (p=1) 2017-11-14 09:45:28,290 [DEBUG] contig 2017-11-14 09:45:28,290 [DEBUG] who? ref0677792.1e5 ref0677792.1e3 2017-11-14 09:45:28,290 [DEBUG] Grabbing contig between nodes ref0677792.1e5 & ref0677792.1e3 - [trim 0, 0] 2017-11-14 09:45:28,290 [DEBUG] contig 692 to 1631 2017-11-14 09:45:28,290 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,290 [DEBUG] Moving from ref0677792.1e5 to ref0677792.0e3 (p=1) 2017-11-14 09:45:28,290 [DEBUG] unimproved gap 2017-11-14 09:45:28,290 [DEBUG] Moving from ref0677792.0e3 to ref0677792e5 (p=1) 2017-11-14 09:45:28,290 [DEBUG] contig 2017-11-14 09:45:28,290 [DEBUG] who? ref0677792e5 ref0677792.0e3 2017-11-14 09:45:28,290 [DEBUG] Grabbing contig between nodes ref0677792e5 & ref0677792.0e3 - [trim 0, 0] 2017-11-14 09:45:28,290 [DEBUG] contig 0 to 645 2017-11-14 09:45:28,290 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,291 [DEBUG] FirstFlipping 63 2017-11-14 09:45:28,291 [DEBUG] Contig 64 2017-11-14 09:45:28,293 [DEBUG] Moving from ref0318536e3 to ref0318536.18e5 (p=1) 2017-11-14 09:45:28,293 [DEBUG] contig 2017-11-14 09:45:28,293 [DEBUG] who? ref0318536.18e5 ref0318536e3 2017-11-14 09:45:28,293 [DEBUG] Grabbing contig between nodes ref0318536.18e5 & ref0318536e3 - [trim 0, 0] 2017-11-14 09:45:28,293 [DEBUG] contig 7388 to 7602 2017-11-14 09:45:28,293 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,293 [DEBUG] Moving from ref0318536.18e5 to ref0318536.17e3 (p=1) 2017-11-14 09:45:28,294 [DEBUG] unimproved gap 2017-11-14 09:45:28,294 [DEBUG] Moving from ref0318536.17e3 to ref0318536.17e5 (p=1) 2017-11-14 09:45:28,294 [DEBUG] contig 2017-11-14 09:45:28,294 [DEBUG] who? ref0318536.17e5 ref0318536.17e3 2017-11-14 09:45:28,294 [DEBUG] Grabbing contig between nodes ref0318536.17e5 & ref0318536.17e3 - [trim 0, 0] 2017-11-14 09:45:28,294 [DEBUG] contig 7075 to 7139 2017-11-14 09:45:28,294 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,294 [DEBUG] Moving from ref0318536.17e5 to ref0318536.16e3 (p=1) 2017-11-14 09:45:28,294 [DEBUG] unimproved gap 2017-11-14 09:45:28,294 [DEBUG] Moving from ref0318536.16e3 to ref0318536.16e5 (p=1) 2017-11-14 09:45:28,294 [DEBUG] contig 2017-11-14 09:45:28,294 [DEBUG] who? ref0318536.16e5 ref0318536.16e3 2017-11-14 09:45:28,294 [DEBUG] Grabbing contig between nodes ref0318536.16e5 & ref0318536.16e3 - [trim 0, 0] 2017-11-14 09:45:28,295 [DEBUG] contig 6670 to 6815 2017-11-14 09:45:28,295 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,295 [DEBUG] Moving from ref0318536.16e5 to ref0318536.15e3 (p=1) 2017-11-14 09:45:28,295 [DEBUG] unimproved gap 2017-11-14 09:45:28,295 [DEBUG] Moving from ref0318536.15e3 to ref0318536.15e5 (p=1) 2017-11-14 09:45:28,295 [DEBUG] contig 2017-11-14 09:45:28,295 [DEBUG] who? ref0318536.15e5 ref0318536.15e3 2017-11-14 09:45:28,295 [DEBUG] Grabbing contig between nodes ref0318536.15e5 & ref0318536.15e3 - [trim 0, 0] 2017-11-14 09:45:28,295 [DEBUG] contig 6512 to 6570 2017-11-14 09:45:28,295 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,295 [DEBUG] Moving from ref0318536.15e5 to ref0318536.14e3 (p=1) 2017-11-14 09:45:28,295 [DEBUG] unimproved gap 2017-11-14 09:45:28,295 [DEBUG] Moving from ref0318536.14e3 to ref0318536.14e5 (p=1) 2017-11-14 09:45:28,296 [DEBUG] contig 2017-11-14 09:45:28,296 [DEBUG] who? ref0318536.14e5 ref0318536.14e3 2017-11-14 09:45:28,296 [DEBUG] Grabbing contig between nodes ref0318536.14e5 & ref0318536.14e3 - [trim 0, 0] 2017-11-14 09:45:28,296 [DEBUG] contig 5364 to 6462 2017-11-14 09:45:28,296 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,296 [DEBUG] Moving from ref0318536.14e5 to ref0318536.13e3 (p=1) 2017-11-14 09:45:28,296 [DEBUG] unimproved gap 2017-11-14 09:45:28,296 [DEBUG] Moving from ref0318536.13e3 to ref0318536.13e5 (p=1) 2017-11-14 09:45:28,296 [DEBUG] contig 2017-11-14 09:45:28,296 [DEBUG] who? ref0318536.13e5 ref0318536.13e3 2017-11-14 09:45:28,296 [DEBUG] Grabbing contig between nodes ref0318536.13e5 & ref0318536.13e3 - [trim 0, 0] 2017-11-14 09:45:28,296 [DEBUG] contig 5123 to 5296 2017-11-14 09:45:28,296 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,297 [DEBUG] Moving from ref0318536.13e5 to ref0318536.12e3 (p=1) 2017-11-14 09:45:28,297 [DEBUG] unimproved gap 2017-11-14 09:45:28,297 [DEBUG] Moving from ref0318536.12e3 to ref0318536.12e5 (p=1) 2017-11-14 09:45:28,297 [DEBUG] contig 2017-11-14 09:45:28,297 [DEBUG] who? ref0318536.12e5 ref0318536.12e3 2017-11-14 09:45:28,297 [DEBUG] Grabbing contig between nodes ref0318536.12e5 & ref0318536.12e3 - [trim 0, 0] 2017-11-14 09:45:28,297 [DEBUG] contig 4896 to 5084 2017-11-14 09:45:28,297 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,297 [DEBUG] Moving from ref0318536.12e5 to ref0318536.11e3 (p=1) 2017-11-14 09:45:28,297 [DEBUG] unimproved gap 2017-11-14 09:45:28,297 [DEBUG] Moving from ref0318536.11e3 to ref0318536.11e5 (p=1) 2017-11-14 09:45:28,297 [DEBUG] contig 2017-11-14 09:45:28,297 [DEBUG] who? ref0318536.11e5 ref0318536.11e3 2017-11-14 09:45:28,297 [DEBUG] Grabbing contig between nodes ref0318536.11e5 & ref0318536.11e3 - [trim 0, 0] 2017-11-14 09:45:28,298 [DEBUG] contig 3589 to 4736 2017-11-14 09:45:28,298 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,298 [DEBUG] Moving from ref0318536.11e5 to ref0318536.10e3 (p=1) 2017-11-14 09:45:28,298 [DEBUG] unimproved gap 2017-11-14 09:45:28,298 [DEBUG] Moving from ref0318536.10e3 to ref0318536.10e5 (p=1) 2017-11-14 09:45:28,298 [DEBUG] contig 2017-11-14 09:45:28,298 [DEBUG] who? ref0318536.10e5 ref0318536.10e3 2017-11-14 09:45:28,298 [DEBUG] Grabbing contig between nodes ref0318536.10e5 & ref0318536.10e3 - [trim 0, 0] 2017-11-14 09:45:28,298 [DEBUG] contig 3243 to 3509 2017-11-14 09:45:28,298 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,298 [DEBUG] Moving from ref0318536.10e5 to ref0318536.9e3 (p=1) 2017-11-14 09:45:28,298 [DEBUG] unimproved gap 2017-11-14 09:45:28,298 [DEBUG] Moving from ref0318536.9e3 to ref0318536.9e5 (p=1) 2017-11-14 09:45:28,299 [DEBUG] contig 2017-11-14 09:45:28,299 [DEBUG] who? ref0318536.9e5 ref0318536.9e3 2017-11-14 09:45:28,299 [DEBUG] Grabbing contig between nodes ref0318536.9e5 & ref0318536.9e3 - [trim 0, 0] 2017-11-14 09:45:28,299 [DEBUG] contig 3047 to 3117 2017-11-14 09:45:28,299 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,299 [DEBUG] Moving from ref0318536.9e5 to ref0318536.8e3 (p=1) 2017-11-14 09:45:28,299 [DEBUG] unimproved gap 2017-11-14 09:45:28,299 [DEBUG] Moving from ref0318536.8e3 to ref0318536.8e5 (p=1) 2017-11-14 09:45:28,299 [DEBUG] contig 2017-11-14 09:45:28,299 [DEBUG] who? ref0318536.8e5 ref0318536.8e3 2017-11-14 09:45:28,299 [DEBUG] Grabbing contig between nodes ref0318536.8e5 & ref0318536.8e3 - [trim 0, 0] 2017-11-14 09:45:28,299 [DEBUG] contig 2943 to 2994 2017-11-14 09:45:28,299 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,299 [DEBUG] Moving from ref0318536.8e5 to ref0318536.7e3 (p=1) 2017-11-14 09:45:28,300 [DEBUG] unimproved gap 2017-11-14 09:45:28,300 [DEBUG] Moving from ref0318536.7e3 to ref0318536.7e5 (p=1) 2017-11-14 09:45:28,300 [DEBUG] contig 2017-11-14 09:45:28,300 [DEBUG] who? ref0318536.7e5 ref0318536.7e3 2017-11-14 09:45:28,300 [DEBUG] Grabbing contig between nodes ref0318536.7e5 & ref0318536.7e3 - [trim 0, 0] 2017-11-14 09:45:28,300 [DEBUG] contig 2688 to 2758 2017-11-14 09:45:28,300 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,300 [DEBUG] Moving from ref0318536.7e5 to ref0318536.6e3 (p=1) 2017-11-14 09:45:28,300 [DEBUG] unimproved gap 2017-11-14 09:45:28,300 [DEBUG] Moving from ref0318536.6e3 to ref0318536.6e5 (p=1) 2017-11-14 09:45:28,300 [DEBUG] contig 2017-11-14 09:45:28,300 [DEBUG] who? ref0318536.6e5 ref0318536.6e3 2017-11-14 09:45:28,300 [DEBUG] Grabbing contig between nodes ref0318536.6e5 & ref0318536.6e3 - [trim 0, 0] 2017-11-14 09:45:28,301 [DEBUG] contig 2574 to 2614 2017-11-14 09:45:28,301 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,301 [DEBUG] Moving from ref0318536.6e5 to ref0318536.5e3 (p=1) 2017-11-14 09:45:28,301 [DEBUG] unimproved gap 2017-11-14 09:45:28,301 [DEBUG] Moving from ref0318536.5e3 to ref0318536.5e5 (p=1) 2017-11-14 09:45:28,301 [DEBUG] contig 2017-11-14 09:45:28,301 [DEBUG] who? ref0318536.5e5 ref0318536.5e3 2017-11-14 09:45:28,301 [DEBUG] Grabbing contig between nodes ref0318536.5e5 & ref0318536.5e3 - [trim 0, 0] 2017-11-14 09:45:28,301 [DEBUG] contig 1822 to 1949 2017-11-14 09:45:28,301 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,301 [DEBUG] Moving from ref0318536.5e5 to ref0318536.4e3 (p=1) 2017-11-14 09:45:28,301 [DEBUG] unimproved gap 2017-11-14 09:45:28,301 [DEBUG] Moving from ref0318536.4e3 to ref0318536.4e5 (p=1) 2017-11-14 09:45:28,302 [DEBUG] contig 2017-11-14 09:45:28,302 [DEBUG] who? ref0318536.4e5 ref0318536.4e3 2017-11-14 09:45:28,302 [DEBUG] Grabbing contig between nodes ref0318536.4e5 & ref0318536.4e3 - [trim 0, 0] 2017-11-14 09:45:28,302 [DEBUG] contig 1655 to 1791 2017-11-14 09:45:28,302 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,302 [DEBUG] Moving from ref0318536.4e5 to ref0318536.3e3 (p=1) 2017-11-14 09:45:28,302 [DEBUG] unimproved gap 2017-11-14 09:45:28,302 [DEBUG] Moving from ref0318536.3e3 to ref0318536.3e5 (p=1) 2017-11-14 09:45:28,302 [DEBUG] contig 2017-11-14 09:45:28,302 [DEBUG] who? ref0318536.3e5 ref0318536.3e3 2017-11-14 09:45:28,302 [DEBUG] Grabbing contig between nodes ref0318536.3e5 & ref0318536.3e3 - [trim 0, 0] 2017-11-14 09:45:28,302 [DEBUG] contig 1563 to 1616 2017-11-14 09:45:28,302 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,303 [DEBUG] Moving from ref0318536.3e5 to ref0318536.2e3 (p=1) 2017-11-14 09:45:28,303 [DEBUG] unimproved gap 2017-11-14 09:45:28,303 [DEBUG] Moving from ref0318536.2e3 to ref0318536.2e5 (p=1) 2017-11-14 09:45:28,303 [DEBUG] contig 2017-11-14 09:45:28,303 [DEBUG] who? ref0318536.2e5 ref0318536.2e3 2017-11-14 09:45:28,303 [DEBUG] Grabbing contig between nodes ref0318536.2e5 & ref0318536.2e3 - [trim 0, 0] 2017-11-14 09:45:28,303 [DEBUG] contig 1212 to 1393 2017-11-14 09:45:28,303 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,303 [DEBUG] Moving from ref0318536.2e5 to ref0318536.1e3 (p=1) 2017-11-14 09:45:28,303 [DEBUG] unimproved gap 2017-11-14 09:45:28,303 [DEBUG] Moving from ref0318536.1e3 to ref0318536.1e5 (p=1) 2017-11-14 09:45:28,303 [DEBUG] contig 2017-11-14 09:45:28,303 [DEBUG] who? ref0318536.1e5 ref0318536.1e3 2017-11-14 09:45:28,304 [DEBUG] Grabbing contig between nodes ref0318536.1e5 & ref0318536.1e3 - [trim 0, 0] 2017-11-14 09:45:28,304 [DEBUG] contig 901 to 990 2017-11-14 09:45:28,304 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,304 [DEBUG] Moving from ref0318536.1e5 to ref0318536.0e3 (p=1) 2017-11-14 09:45:28,304 [DEBUG] unimproved gap 2017-11-14 09:45:28,304 [DEBUG] Moving from ref0318536.0e3 to ref0318536e5 (p=1) 2017-11-14 09:45:28,304 [DEBUG] contig 2017-11-14 09:45:28,304 [DEBUG] who? ref0318536e5 ref0318536.0e3 2017-11-14 09:45:28,304 [DEBUG] Grabbing contig between nodes ref0318536e5 & ref0318536.0e3 - [trim 0, 0] 2017-11-14 09:45:28,304 [DEBUG] contig 0 to 402 2017-11-14 09:45:28,304 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,304 [DEBUG] FirstFlipping 64 2017-11-14 09:45:28,305 [DEBUG] Contig 65 2017-11-14 09:45:28,307 [DEBUG] Moving from ref0516067e5 to ref0516067.0e3 (p=1) 2017-11-14 09:45:28,307 [DEBUG] contig 2017-11-14 09:45:28,307 [DEBUG] who? ref0516067e5 ref0516067.0e3 2017-11-14 09:45:28,307 [DEBUG] Grabbing contig between nodes ref0516067e5 & ref0516067.0e3 - [trim 0, 0] 2017-11-14 09:45:28,307 [DEBUG] contig 0 to 275 2017-11-14 09:45:28,307 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,307 [DEBUG] Moving from ref0516067.0e3 to ref0516067.1e5 (p=1) 2017-11-14 09:45:28,307 [DEBUG] unimproved gap 2017-11-14 09:45:28,307 [DEBUG] Moving from ref0516067.1e5 to ref0516067.1e3 (p=1) 2017-11-14 09:45:28,308 [DEBUG] contig 2017-11-14 09:45:28,308 [DEBUG] who? ref0516067.1e5 ref0516067.1e3 2017-11-14 09:45:28,308 [DEBUG] Grabbing contig between nodes ref0516067.1e5 & ref0516067.1e3 - [trim 0, 0] 2017-11-14 09:45:28,308 [DEBUG] contig 587 to 5375 2017-11-14 09:45:28,308 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,308 [DEBUG] Moving from ref0516067.1e3 to ref0516067.2e5 (p=1) 2017-11-14 09:45:28,308 [DEBUG] unimproved gap 2017-11-14 09:45:28,308 [DEBUG] Moving from ref0516067.2e5 to ref0516067.2e3 (p=1) 2017-11-14 09:45:28,308 [DEBUG] contig 2017-11-14 09:45:28,308 [DEBUG] who? ref0516067.2e5 ref0516067.2e3 2017-11-14 09:45:28,308 [DEBUG] Grabbing contig between nodes ref0516067.2e5 & ref0516067.2e3 - [trim 0, 0] 2017-11-14 09:45:28,308 [DEBUG] contig 5429 to 8416 2017-11-14 09:45:28,308 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,309 [DEBUG] Moving from ref0516067.2e3 to ref0516067.3e5 (p=1) 2017-11-14 09:45:28,309 [DEBUG] unimproved gap 2017-11-14 09:45:28,309 [DEBUG] Moving from ref0516067.3e5 to ref0516067.3e3 (p=1) 2017-11-14 09:45:28,309 [DEBUG] contig 2017-11-14 09:45:28,309 [DEBUG] who? ref0516067.3e5 ref0516067.3e3 2017-11-14 09:45:28,309 [DEBUG] Grabbing contig between nodes ref0516067.3e5 & ref0516067.3e3 - [trim 0, 0] 2017-11-14 09:45:28,309 [DEBUG] contig 8463 to 8507 2017-11-14 09:45:28,309 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,309 [DEBUG] Moving from ref0516067.3e3 to ref0516067.4e5 (p=1) 2017-11-14 09:45:28,309 [DEBUG] unimproved gap 2017-11-14 09:45:28,309 [DEBUG] Moving from ref0516067.4e5 to ref0516067.4e3 (p=1) 2017-11-14 09:45:28,309 [DEBUG] contig 2017-11-14 09:45:28,309 [DEBUG] who? ref0516067.4e5 ref0516067.4e3 2017-11-14 09:45:28,310 [DEBUG] Grabbing contig between nodes ref0516067.4e5 & ref0516067.4e3 - [trim 0, 0] 2017-11-14 09:45:28,310 [DEBUG] contig 8554 to 11394 2017-11-14 09:45:28,310 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,310 [DEBUG] Moving from ref0516067.4e3 to ref0516067.5e5 (p=1) 2017-11-14 09:45:28,310 [DEBUG] unimproved gap 2017-11-14 09:45:28,310 [DEBUG] Moving from ref0516067.5e5 to ref0516067.5e3 (p=1) 2017-11-14 09:45:28,310 [DEBUG] contig 2017-11-14 09:45:28,310 [DEBUG] who? ref0516067.5e5 ref0516067.5e3 2017-11-14 09:45:28,310 [DEBUG] Grabbing contig between nodes ref0516067.5e5 & ref0516067.5e3 - [trim 0, 0] 2017-11-14 09:45:28,310 [DEBUG] contig 11478 to 12398 2017-11-14 09:45:28,310 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,310 [DEBUG] Moving from ref0516067.5e3 to ref0516067.6e5 (p=1) 2017-11-14 09:45:28,310 [DEBUG] unimproved gap 2017-11-14 09:45:28,311 [DEBUG] Moving from ref0516067.6e5 to ref0516067.6e3 (p=1) 2017-11-14 09:45:28,311 [DEBUG] contig 2017-11-14 09:45:28,311 [DEBUG] who? ref0516067.6e5 ref0516067.6e3 2017-11-14 09:45:28,311 [DEBUG] Grabbing contig between nodes ref0516067.6e5 & ref0516067.6e3 - [trim 0, 0] 2017-11-14 09:45:28,311 [DEBUG] contig 12450 to 12667 2017-11-14 09:45:28,311 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,311 [DEBUG] Moving from ref0516067.6e3 to ref0516067.7e5 (p=1) 2017-11-14 09:45:28,311 [DEBUG] unimproved gap 2017-11-14 09:45:28,311 [DEBUG] Moving from ref0516067.7e5 to ref0516067.7e3 (p=1) 2017-11-14 09:45:28,311 [DEBUG] contig 2017-11-14 09:45:28,311 [DEBUG] who? ref0516067.7e5 ref0516067.7e3 2017-11-14 09:45:28,311 [DEBUG] Grabbing contig between nodes ref0516067.7e5 & ref0516067.7e3 - [trim 0, 0] 2017-11-14 09:45:28,311 [DEBUG] contig 12766 to 12984 2017-11-14 09:45:28,312 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,312 [DEBUG] Moving from ref0516067.7e3 to ref0516067.8e5 (p=1) 2017-11-14 09:45:28,312 [DEBUG] unimproved gap 2017-11-14 09:45:28,312 [DEBUG] Moving from ref0516067.8e5 to ref0516067.8e3 (p=1) 2017-11-14 09:45:28,312 [DEBUG] contig 2017-11-14 09:45:28,312 [DEBUG] who? ref0516067.8e5 ref0516067.8e3 2017-11-14 09:45:28,312 [DEBUG] Grabbing contig between nodes ref0516067.8e5 & ref0516067.8e3 - [trim 0, 0] 2017-11-14 09:45:28,312 [DEBUG] contig 13020 to 17380 2017-11-14 09:45:28,312 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,312 [DEBUG] Moving from ref0516067.8e3 to ref0516067.9e5 (p=1) 2017-11-14 09:45:28,312 [DEBUG] unimproved gap 2017-11-14 09:45:28,312 [DEBUG] Moving from ref0516067.9e5 to ref0516067.9e3 (p=1) 2017-11-14 09:45:28,312 [DEBUG] contig 2017-11-14 09:45:28,313 [DEBUG] who? ref0516067.9e5 ref0516067.9e3 2017-11-14 09:45:28,313 [DEBUG] Grabbing contig between nodes ref0516067.9e5 & ref0516067.9e3 - [trim 0, 0] 2017-11-14 09:45:28,313 [DEBUG] contig 17508 to 17546 2017-11-14 09:45:28,313 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,313 [DEBUG] Moving from ref0516067.9e3 to ref0516067.10e5 (p=1) 2017-11-14 09:45:28,313 [DEBUG] unimproved gap 2017-11-14 09:45:28,313 [DEBUG] Moving from ref0516067.10e5 to ref0516067.10e3 (p=1) 2017-11-14 09:45:28,313 [DEBUG] contig 2017-11-14 09:45:28,313 [DEBUG] who? ref0516067.10e5 ref0516067.10e3 2017-11-14 09:45:28,313 [DEBUG] Grabbing contig between nodes ref0516067.10e5 & ref0516067.10e3 - [trim 0, 0] 2017-11-14 09:45:28,313 [DEBUG] contig 17602 to 18453 2017-11-14 09:45:28,313 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,313 [DEBUG] Moving from ref0516067.10e3 to ref0516067.11e5 (p=1) 2017-11-14 09:45:28,313 [DEBUG] unimproved gap 2017-11-14 09:45:28,314 [DEBUG] Moving from ref0516067.11e5 to ref0516067.11e3 (p=1) 2017-11-14 09:45:28,314 [DEBUG] contig 2017-11-14 09:45:28,314 [DEBUG] who? ref0516067.11e5 ref0516067.11e3 2017-11-14 09:45:28,314 [DEBUG] Grabbing contig between nodes ref0516067.11e5 & ref0516067.11e3 - [trim 0, 0] 2017-11-14 09:45:28,314 [DEBUG] contig 18551 to 19523 2017-11-14 09:45:28,314 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,314 [DEBUG] Moving from ref0516067.11e3 to ref0516067.12e5 (p=1) 2017-11-14 09:45:28,314 [DEBUG] unimproved gap 2017-11-14 09:45:28,314 [DEBUG] Moving from ref0516067.12e5 to ref0516067.12e3 (p=1) 2017-11-14 09:45:28,314 [DEBUG] contig 2017-11-14 09:45:28,314 [DEBUG] who? ref0516067.12e5 ref0516067.12e3 2017-11-14 09:45:28,314 [DEBUG] Grabbing contig between nodes ref0516067.12e5 & ref0516067.12e3 - [trim 0, 0] 2017-11-14 09:45:28,314 [DEBUG] contig 19982 to 24306 2017-11-14 09:45:28,315 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,315 [DEBUG] Moving from ref0516067.12e3 to ref0516067.13e5 (p=1) 2017-11-14 09:45:28,315 [DEBUG] unimproved gap 2017-11-14 09:45:28,315 [DEBUG] Moving from ref0516067.13e5 to ref0516067.13e3 (p=1) 2017-11-14 09:45:28,315 [DEBUG] contig 2017-11-14 09:45:28,315 [DEBUG] who? ref0516067.13e5 ref0516067.13e3 2017-11-14 09:45:28,315 [DEBUG] Grabbing contig between nodes ref0516067.13e5 & ref0516067.13e3 - [trim 0, 0] 2017-11-14 09:45:28,315 [DEBUG] contig 24695 to 25515 2017-11-14 09:45:28,315 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,315 [DEBUG] Moving from ref0516067.13e3 to ref0516067.14e5 (p=1) 2017-11-14 09:45:28,315 [DEBUG] unimproved gap 2017-11-14 09:45:28,315 [DEBUG] Moving from ref0516067.14e5 to ref0516067.14e3 (p=1) 2017-11-14 09:45:28,315 [DEBUG] contig 2017-11-14 09:45:28,315 [DEBUG] who? ref0516067.14e5 ref0516067.14e3 2017-11-14 09:45:28,316 [DEBUG] Grabbing contig between nodes ref0516067.14e5 & ref0516067.14e3 - [trim 0, 0] 2017-11-14 09:45:28,316 [DEBUG] contig 25755 to 26152 2017-11-14 09:45:28,316 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,316 [DEBUG] Moving from ref0516067.14e3 to ref0516067.15e5 (p=1) 2017-11-14 09:45:28,316 [DEBUG] unimproved gap 2017-11-14 09:45:28,316 [DEBUG] Moving from ref0516067.15e5 to ref0516067.15e3 (p=1) 2017-11-14 09:45:28,316 [DEBUG] contig 2017-11-14 09:45:28,316 [DEBUG] who? ref0516067.15e5 ref0516067.15e3 2017-11-14 09:45:28,316 [DEBUG] Grabbing contig between nodes ref0516067.15e5 & ref0516067.15e3 - [trim 0, 0] 2017-11-14 09:45:28,316 [DEBUG] contig 26303 to 29228 2017-11-14 09:45:28,316 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,316 [DEBUG] Moving from ref0516067.15e3 to ref0516067.16e5 (p=1) 2017-11-14 09:45:28,317 [DEBUG] unimproved gap 2017-11-14 09:45:28,317 [DEBUG] Moving from ref0516067.16e5 to ref0516067.16e3 (p=1) 2017-11-14 09:45:28,317 [DEBUG] contig 2017-11-14 09:45:28,317 [DEBUG] who? ref0516067.16e5 ref0516067.16e3 2017-11-14 09:45:28,317 [DEBUG] Grabbing contig between nodes ref0516067.16e5 & ref0516067.16e3 - [trim 0, 0] 2017-11-14 09:45:28,317 [DEBUG] contig 29271 to 32453 2017-11-14 09:45:28,317 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,317 [DEBUG] Moving from ref0516067.16e3 to ref0516067.17e5 (p=1) 2017-11-14 09:45:28,317 [DEBUG] unimproved gap 2017-11-14 09:45:28,317 [DEBUG] Moving from ref0516067.17e5 to ref0516067.17e3 (p=1) 2017-11-14 09:45:28,317 [DEBUG] contig 2017-11-14 09:45:28,317 [DEBUG] who? ref0516067.17e5 ref0516067.17e3 2017-11-14 09:45:28,317 [DEBUG] Grabbing contig between nodes ref0516067.17e5 & ref0516067.17e3 - [trim 0, 0] 2017-11-14 09:45:28,318 [DEBUG] contig 32514 to 33592 2017-11-14 09:45:28,318 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,318 [DEBUG] Moving from ref0516067.17e3 to ref0516067.18e5 (p=1) 2017-11-14 09:45:28,318 [DEBUG] unimproved gap 2017-11-14 09:45:28,318 [DEBUG] Moving from ref0516067.18e5 to ref0516067e3 (p=1) 2017-11-14 09:45:28,318 [DEBUG] contig 2017-11-14 09:45:28,318 [DEBUG] who? ref0516067.18e5 ref0516067e3 2017-11-14 09:45:28,318 [DEBUG] Grabbing contig between nodes ref0516067.18e5 & ref0516067e3 - [trim 0, 0] 2017-11-14 09:45:28,318 [DEBUG] contig 34077 to 34262 2017-11-14 09:45:28,318 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,318 [DEBUG] Contig 66 2017-11-14 09:45:28,321 [DEBUG] Moving from ref0472511e5 to ref0472511.0e3 (p=1) 2017-11-14 09:45:28,321 [DEBUG] contig 2017-11-14 09:45:28,321 [DEBUG] who? ref0472511e5 ref0472511.0e3 2017-11-14 09:45:28,321 [DEBUG] Grabbing contig between nodes ref0472511e5 & ref0472511.0e3 - [trim 0, 0] 2017-11-14 09:45:28,321 [DEBUG] contig 0 to 151 2017-11-14 09:45:28,321 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,321 [DEBUG] Moving from ref0472511.0e3 to ref0472511.1e5 (p=1) 2017-11-14 09:45:28,321 [DEBUG] unimproved gap 2017-11-14 09:45:28,321 [DEBUG] Moving from ref0472511.1e5 to ref0472511.1e3 (p=1) 2017-11-14 09:45:28,321 [DEBUG] contig 2017-11-14 09:45:28,321 [DEBUG] who? ref0472511.1e5 ref0472511.1e3 2017-11-14 09:45:28,321 [DEBUG] Grabbing contig between nodes ref0472511.1e5 & ref0472511.1e3 - [trim 0, 0] 2017-11-14 09:45:28,321 [DEBUG] contig 409 to 503 2017-11-14 09:45:28,322 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,322 [DEBUG] Moving from ref0472511.1e3 to ref0472511.2e5 (p=1) 2017-11-14 09:45:28,322 [DEBUG] unimproved gap 2017-11-14 09:45:28,322 [DEBUG] Moving from ref0472511.2e5 to ref0472511.2e3 (p=1) 2017-11-14 09:45:28,322 [DEBUG] contig 2017-11-14 09:45:28,322 [DEBUG] who? ref0472511.2e5 ref0472511.2e3 2017-11-14 09:45:28,322 [DEBUG] Grabbing contig between nodes ref0472511.2e5 & ref0472511.2e3 - [trim 0, 0] 2017-11-14 09:45:28,322 [DEBUG] contig 759 to 865 2017-11-14 09:45:28,322 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,322 [DEBUG] Moving from ref0472511.2e3 to ref0472511.3e5 (p=1) 2017-11-14 09:45:28,322 [DEBUG] unimproved gap 2017-11-14 09:45:28,322 [DEBUG] Moving from ref0472511.3e5 to ref0472511.3e3 (p=1) 2017-11-14 09:45:28,322 [DEBUG] contig 2017-11-14 09:45:28,323 [DEBUG] who? ref0472511.3e5 ref0472511.3e3 2017-11-14 09:45:28,323 [DEBUG] Grabbing contig between nodes ref0472511.3e5 & ref0472511.3e3 - [trim 0, 0] 2017-11-14 09:45:28,323 [DEBUG] contig 1028 to 1410 2017-11-14 09:45:28,323 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,323 [DEBUG] Moving from ref0472511.3e3 to ref0472511.4e5 (p=1) 2017-11-14 09:45:28,323 [DEBUG] unimproved gap 2017-11-14 09:45:28,323 [DEBUG] Moving from ref0472511.4e5 to ref0472511.4e3 (p=1) 2017-11-14 09:45:28,323 [DEBUG] contig 2017-11-14 09:45:28,323 [DEBUG] who? ref0472511.4e5 ref0472511.4e3 2017-11-14 09:45:28,323 [DEBUG] Grabbing contig between nodes ref0472511.4e5 & ref0472511.4e3 - [trim 0, 0] 2017-11-14 09:45:28,323 [DEBUG] contig 1589 to 6239 2017-11-14 09:45:28,323 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,323 [DEBUG] Moving from ref0472511.4e3 to ref0472511.5e5 (p=1) 2017-11-14 09:45:28,324 [DEBUG] unimproved gap 2017-11-14 09:45:28,324 [DEBUG] Moving from ref0472511.5e5 to ref0472511.5e3 (p=1) 2017-11-14 09:45:28,324 [DEBUG] contig 2017-11-14 09:45:28,324 [DEBUG] who? ref0472511.5e5 ref0472511.5e3 2017-11-14 09:45:28,324 [DEBUG] Grabbing contig between nodes ref0472511.5e5 & ref0472511.5e3 - [trim 0, 0] 2017-11-14 09:45:28,324 [DEBUG] contig 6302 to 9531 2017-11-14 09:45:28,324 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,324 [DEBUG] Moving from ref0472511.5e3 to ref0472511.6e5 (p=1) 2017-11-14 09:45:28,324 [DEBUG] unimproved gap 2017-11-14 09:45:28,324 [DEBUG] Moving from ref0472511.6e5 to ref0472511.6e3 (p=1) 2017-11-14 09:45:28,324 [DEBUG] contig 2017-11-14 09:45:28,324 [DEBUG] who? ref0472511.6e5 ref0472511.6e3 2017-11-14 09:45:28,324 [DEBUG] Grabbing contig between nodes ref0472511.6e5 & ref0472511.6e3 - [trim 0, 0] 2017-11-14 09:45:28,325 [DEBUG] contig 9641 to 12109 2017-11-14 09:45:28,325 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,325 [DEBUG] Moving from ref0472511.6e3 to ref0472511.7e5 (p=1) 2017-11-14 09:45:28,325 [DEBUG] unimproved gap 2017-11-14 09:45:28,325 [DEBUG] Moving from ref0472511.7e5 to ref0472511.7e3 (p=1) 2017-11-14 09:45:28,325 [DEBUG] contig 2017-11-14 09:45:28,325 [DEBUG] who? ref0472511.7e5 ref0472511.7e3 2017-11-14 09:45:28,325 [DEBUG] Grabbing contig between nodes ref0472511.7e5 & ref0472511.7e3 - [trim 0, 0] 2017-11-14 09:45:28,325 [DEBUG] contig 12211 to 13459 2017-11-14 09:45:28,325 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,325 [DEBUG] Moving from ref0472511.7e3 to ref0472511.8e5 (p=1) 2017-11-14 09:45:28,325 [DEBUG] unimproved gap 2017-11-14 09:45:28,325 [DEBUG] Moving from ref0472511.8e5 to ref0472511.8e3 (p=1) 2017-11-14 09:45:28,326 [DEBUG] contig 2017-11-14 09:45:28,326 [DEBUG] who? ref0472511.8e5 ref0472511.8e3 2017-11-14 09:45:28,326 [DEBUG] Grabbing contig between nodes ref0472511.8e5 & ref0472511.8e3 - [trim 0, 0] 2017-11-14 09:45:28,326 [DEBUG] contig 13695 to 14405 2017-11-14 09:45:28,326 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,326 [DEBUG] Moving from ref0472511.8e3 to ref0472511.9e5 (p=1) 2017-11-14 09:45:28,326 [DEBUG] unimproved gap 2017-11-14 09:45:28,326 [DEBUG] Moving from ref0472511.9e5 to ref0472511.9e3 (p=1) 2017-11-14 09:45:28,326 [DEBUG] contig 2017-11-14 09:45:28,326 [DEBUG] who? ref0472511.9e5 ref0472511.9e3 2017-11-14 09:45:28,326 [DEBUG] Grabbing contig between nodes ref0472511.9e5 & ref0472511.9e3 - [trim 0, 0] 2017-11-14 09:45:28,326 [DEBUG] contig 14759 to 15494 2017-11-14 09:45:28,326 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,327 [DEBUG] Moving from ref0472511.9e3 to ref0472511.10e5 (p=1) 2017-11-14 09:45:28,327 [DEBUG] unimproved gap 2017-11-14 09:45:28,327 [DEBUG] Moving from ref0472511.10e5 to ref0472511.10e3 (p=1) 2017-11-14 09:45:28,327 [DEBUG] contig 2017-11-14 09:45:28,327 [DEBUG] who? ref0472511.10e5 ref0472511.10e3 2017-11-14 09:45:28,327 [DEBUG] Grabbing contig between nodes ref0472511.10e5 & ref0472511.10e3 - [trim 0, 0] 2017-11-14 09:45:28,327 [DEBUG] contig 15627 to 15652 2017-11-14 09:45:28,327 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,327 [DEBUG] Moving from ref0472511.10e3 to ref0472511.11e5 (p=1) 2017-11-14 09:45:28,327 [DEBUG] unimproved gap 2017-11-14 09:45:28,327 [DEBUG] Moving from ref0472511.11e5 to ref0472511.11e3 (p=1) 2017-11-14 09:45:28,327 [DEBUG] contig 2017-11-14 09:45:28,327 [DEBUG] who? ref0472511.11e5 ref0472511.11e3 2017-11-14 09:45:28,327 [DEBUG] Grabbing contig between nodes ref0472511.11e5 & ref0472511.11e3 - [trim 0, 0] 2017-11-14 09:45:28,328 [DEBUG] contig 15816 to 16558 2017-11-14 09:45:28,328 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,328 [DEBUG] Moving from ref0472511.11e3 to ref0472511.12e5 (p=1) 2017-11-14 09:45:28,328 [DEBUG] unimproved gap 2017-11-14 09:45:28,328 [DEBUG] Moving from ref0472511.12e5 to ref0472511.12e3 (p=1) 2017-11-14 09:45:28,328 [DEBUG] contig 2017-11-14 09:45:28,328 [DEBUG] who? ref0472511.12e5 ref0472511.12e3 2017-11-14 09:45:28,328 [DEBUG] Grabbing contig between nodes ref0472511.12e5 & ref0472511.12e3 - [trim 0, 0] 2017-11-14 09:45:28,328 [DEBUG] contig 16686 to 16920 2017-11-14 09:45:28,328 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,328 [DEBUG] Moving from ref0472511.12e3 to ref0472511.13e5 (p=1) 2017-11-14 09:45:28,328 [DEBUG] unimproved gap 2017-11-14 09:45:28,328 [DEBUG] Moving from ref0472511.13e5 to ref0472511.13e3 (p=1) 2017-11-14 09:45:28,329 [DEBUG] contig 2017-11-14 09:45:28,329 [DEBUG] who? ref0472511.13e5 ref0472511.13e3 2017-11-14 09:45:28,329 [DEBUG] Grabbing contig between nodes ref0472511.13e5 & ref0472511.13e3 - [trim 0, 0] 2017-11-14 09:45:28,329 [DEBUG] contig 17021 to 17059 2017-11-14 09:45:28,329 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,329 [DEBUG] Moving from ref0472511.13e3 to ref0472511.14e5 (p=1) 2017-11-14 09:45:28,329 [DEBUG] unimproved gap 2017-11-14 09:45:28,329 [DEBUG] Moving from ref0472511.14e5 to ref0472511.14e3 (p=1) 2017-11-14 09:45:28,329 [DEBUG] contig 2017-11-14 09:45:28,329 [DEBUG] who? ref0472511.14e5 ref0472511.14e3 2017-11-14 09:45:28,329 [DEBUG] Grabbing contig between nodes ref0472511.14e5 & ref0472511.14e3 - [trim 0, 0] 2017-11-14 09:45:28,329 [DEBUG] contig 17468 to 17503 2017-11-14 09:45:28,329 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,330 [DEBUG] Moving from ref0472511.14e3 to ref0472511.15e5 (p=1) 2017-11-14 09:45:28,330 [DEBUG] unimproved gap 2017-11-14 09:45:28,330 [DEBUG] Moving from ref0472511.15e5 to ref0472511.15e3 (p=1) 2017-11-14 09:45:28,330 [DEBUG] contig 2017-11-14 09:45:28,330 [DEBUG] who? ref0472511.15e5 ref0472511.15e3 2017-11-14 09:45:28,330 [DEBUG] Grabbing contig between nodes ref0472511.15e5 & ref0472511.15e3 - [trim 0, 0] 2017-11-14 09:45:28,330 [DEBUG] contig 17793 to 17837 2017-11-14 09:45:28,330 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,330 [DEBUG] Moving from ref0472511.15e3 to ref0472511.16e5 (p=1) 2017-11-14 09:45:28,330 [DEBUG] unimproved gap 2017-11-14 09:45:28,330 [DEBUG] Moving from ref0472511.16e5 to ref0472511.16e3 (p=1) 2017-11-14 09:45:28,330 [DEBUG] contig 2017-11-14 09:45:28,330 [DEBUG] who? ref0472511.16e5 ref0472511.16e3 2017-11-14 09:45:28,331 [DEBUG] Grabbing contig between nodes ref0472511.16e5 & ref0472511.16e3 - [trim 0, 0] 2017-11-14 09:45:28,331 [DEBUG] contig 18126 to 18319 2017-11-14 09:45:28,331 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,331 [DEBUG] Moving from ref0472511.16e3 to ref0472511.17e5 (p=1) 2017-11-14 09:45:28,331 [DEBUG] unimproved gap 2017-11-14 09:45:28,331 [DEBUG] Moving from ref0472511.17e5 to ref0472511.17e3 (p=1) 2017-11-14 09:45:28,331 [DEBUG] contig 2017-11-14 09:45:28,331 [DEBUG] who? ref0472511.17e5 ref0472511.17e3 2017-11-14 09:45:28,331 [DEBUG] Grabbing contig between nodes ref0472511.17e5 & ref0472511.17e3 - [trim 0, 0] 2017-11-14 09:45:28,331 [DEBUG] contig 18765 to 28046 2017-11-14 09:45:28,331 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,331 [DEBUG] Moving from ref0472511.17e3 to ref0472511.18e5 (p=1) 2017-11-14 09:45:28,331 [DEBUG] unimproved gap 2017-11-14 09:45:28,332 [DEBUG] Moving from ref0472511.18e5 to ref0472511e3 (p=1) 2017-11-14 09:45:28,332 [DEBUG] contig 2017-11-14 09:45:28,332 [DEBUG] who? ref0472511.18e5 ref0472511e3 2017-11-14 09:45:28,332 [DEBUG] Grabbing contig between nodes ref0472511.18e5 & ref0472511e3 - [trim 0, 0] 2017-11-14 09:45:28,332 [DEBUG] contig 28643 to 28800 2017-11-14 09:45:28,332 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,332 [DEBUG] Contig 67 2017-11-14 09:45:28,334 [DEBUG] Moving from ref0704678e5 to ref0704678.0e3 (p=1) 2017-11-14 09:45:28,334 [DEBUG] contig 2017-11-14 09:45:28,334 [DEBUG] who? ref0704678e5 ref0704678.0e3 2017-11-14 09:45:28,334 [DEBUG] Grabbing contig between nodes ref0704678e5 & ref0704678.0e3 - [trim 0, 0] 2017-11-14 09:45:28,335 [DEBUG] contig 0 to 1059 2017-11-14 09:45:28,335 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,335 [DEBUG] Moving from ref0704678.0e3 to ref0704678.1e5 (p=1) 2017-11-14 09:45:28,335 [DEBUG] unimproved gap 2017-11-14 09:45:28,335 [DEBUG] Moving from ref0704678.1e5 to ref0704678.1e3 (p=1) 2017-11-14 09:45:28,335 [DEBUG] contig 2017-11-14 09:45:28,335 [DEBUG] who? ref0704678.1e5 ref0704678.1e3 2017-11-14 09:45:28,335 [DEBUG] Grabbing contig between nodes ref0704678.1e5 & ref0704678.1e3 - [trim 0, 0] 2017-11-14 09:45:28,335 [DEBUG] contig 1175 to 1821 2017-11-14 09:45:28,335 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,335 [DEBUG] Moving from ref0704678.1e3 to ref0704678.2e5 (p=1) 2017-11-14 09:45:28,335 [DEBUG] unimproved gap 2017-11-14 09:45:28,335 [DEBUG] Moving from ref0704678.2e5 to ref0704678.2e3 (p=1) 2017-11-14 09:45:28,335 [DEBUG] contig 2017-11-14 09:45:28,336 [DEBUG] who? ref0704678.2e5 ref0704678.2e3 2017-11-14 09:45:28,336 [DEBUG] Grabbing contig between nodes ref0704678.2e5 & ref0704678.2e3 - [trim 0, 0] 2017-11-14 09:45:28,336 [DEBUG] contig 1930 to 2632 2017-11-14 09:45:28,336 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,336 [DEBUG] Moving from ref0704678.2e3 to ref0704678.3e5 (p=1) 2017-11-14 09:45:28,336 [DEBUG] unimproved gap 2017-11-14 09:45:28,336 [DEBUG] Moving from ref0704678.3e5 to ref0704678.3e3 (p=1) 2017-11-14 09:45:28,336 [DEBUG] contig 2017-11-14 09:45:28,336 [DEBUG] who? ref0704678.3e5 ref0704678.3e3 2017-11-14 09:45:28,336 [DEBUG] Grabbing contig between nodes ref0704678.3e5 & ref0704678.3e3 - [trim 0, 0] 2017-11-14 09:45:28,336 [DEBUG] contig 2743 to 2802 2017-11-14 09:45:28,336 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,336 [DEBUG] Moving from ref0704678.3e3 to ref0704678.4e5 (p=1) 2017-11-14 09:45:28,337 [DEBUG] unimproved gap 2017-11-14 09:45:28,337 [DEBUG] Moving from ref0704678.4e5 to ref0704678.4e3 (p=1) 2017-11-14 09:45:28,337 [DEBUG] contig 2017-11-14 09:45:28,337 [DEBUG] who? ref0704678.4e5 ref0704678.4e3 2017-11-14 09:45:28,337 [DEBUG] Grabbing contig between nodes ref0704678.4e5 & ref0704678.4e3 - [trim 0, 0] 2017-11-14 09:45:28,337 [DEBUG] contig 2875 to 2950 2017-11-14 09:45:28,337 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,337 [DEBUG] Moving from ref0704678.4e3 to ref0704678.5e5 (p=1) 2017-11-14 09:45:28,337 [DEBUG] unimproved gap 2017-11-14 09:45:28,337 [DEBUG] Moving from ref0704678.5e5 to ref0704678.5e3 (p=1) 2017-11-14 09:45:28,337 [DEBUG] contig 2017-11-14 09:45:28,337 [DEBUG] who? ref0704678.5e5 ref0704678.5e3 2017-11-14 09:45:28,337 [DEBUG] Grabbing contig between nodes ref0704678.5e5 & ref0704678.5e3 - [trim 0, 0] 2017-11-14 09:45:28,338 [DEBUG] contig 3048 to 3108 2017-11-14 09:45:28,338 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,338 [DEBUG] Moving from ref0704678.5e3 to ref0704678.6e5 (p=1) 2017-11-14 09:45:28,338 [DEBUG] unimproved gap 2017-11-14 09:45:28,338 [DEBUG] Moving from ref0704678.6e5 to ref0704678.6e3 (p=1) 2017-11-14 09:45:28,338 [DEBUG] contig 2017-11-14 09:45:28,338 [DEBUG] who? ref0704678.6e5 ref0704678.6e3 2017-11-14 09:45:28,338 [DEBUG] Grabbing contig between nodes ref0704678.6e5 & ref0704678.6e3 - [trim 0, 0] 2017-11-14 09:45:28,338 [DEBUG] contig 3232 to 3306 2017-11-14 09:45:28,338 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,338 [DEBUG] Moving from ref0704678.6e3 to ref0704678.7e5 (p=1) 2017-11-14 09:45:28,338 [DEBUG] unimproved gap 2017-11-14 09:45:28,338 [DEBUG] Moving from ref0704678.7e5 to ref0704678.7e3 (p=1) 2017-11-14 09:45:28,339 [DEBUG] contig 2017-11-14 09:45:28,339 [DEBUG] who? ref0704678.7e5 ref0704678.7e3 2017-11-14 09:45:28,339 [DEBUG] Grabbing contig between nodes ref0704678.7e5 & ref0704678.7e3 - [trim 0, 0] 2017-11-14 09:45:28,339 [DEBUG] contig 3399 to 3532 2017-11-14 09:45:28,339 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,339 [DEBUG] Moving from ref0704678.7e3 to ref0704678.8e5 (p=1) 2017-11-14 09:45:28,339 [DEBUG] unimproved gap 2017-11-14 09:45:28,339 [DEBUG] Moving from ref0704678.8e5 to ref0704678.8e3 (p=1) 2017-11-14 09:45:28,339 [DEBUG] contig 2017-11-14 09:45:28,339 [DEBUG] who? ref0704678.8e5 ref0704678.8e3 2017-11-14 09:45:28,339 [DEBUG] Grabbing contig between nodes ref0704678.8e5 & ref0704678.8e3 - [trim 0, 0] 2017-11-14 09:45:28,339 [DEBUG] contig 3872 to 4579 2017-11-14 09:45:28,339 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,340 [DEBUG] Moving from ref0704678.8e3 to ref0704678.9e5 (p=1) 2017-11-14 09:45:28,340 [DEBUG] unimproved gap 2017-11-14 09:45:28,340 [DEBUG] Moving from ref0704678.9e5 to ref0704678.9e3 (p=1) 2017-11-14 09:45:28,340 [DEBUG] contig 2017-11-14 09:45:28,340 [DEBUG] who? ref0704678.9e5 ref0704678.9e3 2017-11-14 09:45:28,340 [DEBUG] Grabbing contig between nodes ref0704678.9e5 & ref0704678.9e3 - [trim 0, 0] 2017-11-14 09:45:28,340 [DEBUG] contig 4661 to 5607 2017-11-14 09:45:28,340 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,340 [DEBUG] Moving from ref0704678.9e3 to ref0704678.10e5 (p=1) 2017-11-14 09:45:28,340 [DEBUG] unimproved gap 2017-11-14 09:45:28,340 [DEBUG] Moving from ref0704678.10e5 to ref0704678.10e3 (p=1) 2017-11-14 09:45:28,340 [DEBUG] contig 2017-11-14 09:45:28,340 [DEBUG] who? ref0704678.10e5 ref0704678.10e3 2017-11-14 09:45:28,341 [DEBUG] Grabbing contig between nodes ref0704678.10e5 & ref0704678.10e3 - [trim 0, 0] 2017-11-14 09:45:28,341 [DEBUG] contig 5901 to 6220 2017-11-14 09:45:28,341 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,341 [DEBUG] Moving from ref0704678.10e3 to ref0704678.11e5 (p=1) 2017-11-14 09:45:28,341 [DEBUG] unimproved gap 2017-11-14 09:45:28,341 [DEBUG] Moving from ref0704678.11e5 to ref0704678.11e3 (p=1) 2017-11-14 09:45:28,341 [DEBUG] contig 2017-11-14 09:45:28,341 [DEBUG] who? ref0704678.11e5 ref0704678.11e3 2017-11-14 09:45:28,341 [DEBUG] Grabbing contig between nodes ref0704678.11e5 & ref0704678.11e3 - [trim 0, 0] 2017-11-14 09:45:28,341 [DEBUG] contig 6344 to 6664 2017-11-14 09:45:28,341 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,341 [DEBUG] Moving from ref0704678.11e3 to ref0704678.12e5 (p=1) 2017-11-14 09:45:28,341 [DEBUG] unimproved gap 2017-11-14 09:45:28,342 [DEBUG] Moving from ref0704678.12e5 to ref0704678.12e3 (p=1) 2017-11-14 09:45:28,342 [DEBUG] contig 2017-11-14 09:45:28,342 [DEBUG] who? ref0704678.12e5 ref0704678.12e3 2017-11-14 09:45:28,342 [DEBUG] Grabbing contig between nodes ref0704678.12e5 & ref0704678.12e3 - [trim 0, 0] 2017-11-14 09:45:28,342 [DEBUG] contig 6909 to 6978 2017-11-14 09:45:28,342 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,342 [DEBUG] Moving from ref0704678.12e3 to ref0704678.13e5 (p=1) 2017-11-14 09:45:28,342 [DEBUG] unimproved gap 2017-11-14 09:45:28,342 [DEBUG] Moving from ref0704678.13e5 to ref0704678.13e3 (p=1) 2017-11-14 09:45:28,342 [DEBUG] contig 2017-11-14 09:45:28,342 [DEBUG] who? ref0704678.13e5 ref0704678.13e3 2017-11-14 09:45:28,342 [DEBUG] Grabbing contig between nodes ref0704678.13e5 & ref0704678.13e3 - [trim 0, 0] 2017-11-14 09:45:28,342 [DEBUG] contig 7204 to 7328 2017-11-14 09:45:28,343 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,343 [DEBUG] Moving from ref0704678.13e3 to ref0704678.14e5 (p=1) 2017-11-14 09:45:28,343 [DEBUG] unimproved gap 2017-11-14 09:45:28,343 [DEBUG] Moving from ref0704678.14e5 to ref0704678.14e3 (p=1) 2017-11-14 09:45:28,343 [DEBUG] contig 2017-11-14 09:45:28,343 [DEBUG] who? ref0704678.14e5 ref0704678.14e3 2017-11-14 09:45:28,343 [DEBUG] Grabbing contig between nodes ref0704678.14e5 & ref0704678.14e3 - [trim 0, 0] 2017-11-14 09:45:28,343 [DEBUG] contig 7611 to 7801 2017-11-14 09:45:28,343 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,343 [DEBUG] Moving from ref0704678.14e3 to ref0704678.15e5 (p=1) 2017-11-14 09:45:28,343 [DEBUG] unimproved gap 2017-11-14 09:45:28,343 [DEBUG] Moving from ref0704678.15e5 to ref0704678.15e3 (p=1) 2017-11-14 09:45:28,343 [DEBUG] contig 2017-11-14 09:45:28,344 [DEBUG] who? ref0704678.15e5 ref0704678.15e3 2017-11-14 09:45:28,344 [DEBUG] Grabbing contig between nodes ref0704678.15e5 & ref0704678.15e3 - [trim 0, 0] 2017-11-14 09:45:28,344 [DEBUG] contig 7973 to 8313 2017-11-14 09:45:28,344 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,344 [DEBUG] Moving from ref0704678.15e3 to ref0704678.16e5 (p=1) 2017-11-14 09:45:28,344 [DEBUG] unimproved gap 2017-11-14 09:45:28,344 [DEBUG] Moving from ref0704678.16e5 to ref0704678.16e3 (p=1) 2017-11-14 09:45:28,344 [DEBUG] contig 2017-11-14 09:45:28,344 [DEBUG] who? ref0704678.16e5 ref0704678.16e3 2017-11-14 09:45:28,344 [DEBUG] Grabbing contig between nodes ref0704678.16e5 & ref0704678.16e3 - [trim 0, 0] 2017-11-14 09:45:28,344 [DEBUG] contig 8371 to 8594 2017-11-14 09:45:28,344 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,344 [DEBUG] Moving from ref0704678.16e3 to ref0704678.17e5 (p=1) 2017-11-14 09:45:28,345 [DEBUG] unimproved gap 2017-11-14 09:45:28,345 [DEBUG] Moving from ref0704678.17e5 to ref0704678.17e3 (p=1) 2017-11-14 09:45:28,345 [DEBUG] contig 2017-11-14 09:45:28,345 [DEBUG] who? ref0704678.17e5 ref0704678.17e3 2017-11-14 09:45:28,345 [DEBUG] Grabbing contig between nodes ref0704678.17e5 & ref0704678.17e3 - [trim 0, 0] 2017-11-14 09:45:28,345 [DEBUG] contig 8680 to 12414 2017-11-14 09:45:28,345 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,345 [DEBUG] Moving from ref0704678.17e3 to ref0704678.18e5 (p=1) 2017-11-14 09:45:28,345 [DEBUG] unimproved gap 2017-11-14 09:45:28,345 [DEBUG] Moving from ref0704678.18e5 to ref0704678e3 (p=1) 2017-11-14 09:45:28,345 [DEBUG] contig 2017-11-14 09:45:28,345 [DEBUG] who? ref0704678.18e5 ref0704678e3 2017-11-14 09:45:28,345 [DEBUG] Grabbing contig between nodes ref0704678.18e5 & ref0704678e3 - [trim 0, 0] 2017-11-14 09:45:28,346 [DEBUG] contig 12920 to 13477 2017-11-14 09:45:28,346 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,346 [DEBUG] Contig 68 2017-11-14 09:45:28,348 [DEBUG] Moving from ref0551077e3 to ref0551077.17e5 (p=1) 2017-11-14 09:45:28,348 [DEBUG] contig 2017-11-14 09:45:28,348 [DEBUG] who? ref0551077.17e5 ref0551077e3 2017-11-14 09:45:28,348 [DEBUG] Grabbing contig between nodes ref0551077.17e5 & ref0551077e3 - [trim 0, 0] 2017-11-14 09:45:28,348 [DEBUG] contig 6990 to 7038 2017-11-14 09:45:28,348 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,348 [DEBUG] Moving from ref0551077.17e5 to ref0551077.16e3 (p=1) 2017-11-14 09:45:28,348 [DEBUG] unimproved gap 2017-11-14 09:45:28,348 [DEBUG] Moving from ref0551077.16e3 to ref0551077.16e5 (p=1) 2017-11-14 09:45:28,348 [DEBUG] contig 2017-11-14 09:45:28,348 [DEBUG] who? ref0551077.16e5 ref0551077.16e3 2017-11-14 09:45:28,349 [DEBUG] Grabbing contig between nodes ref0551077.16e5 & ref0551077.16e3 - [trim 0, 0] 2017-11-14 09:45:28,349 [DEBUG] contig 6574 to 6606 2017-11-14 09:45:28,349 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,349 [DEBUG] Moving from ref0551077.16e5 to ref0551077.15e3 (p=1) 2017-11-14 09:45:28,349 [DEBUG] unimproved gap 2017-11-14 09:45:28,349 [DEBUG] Moving from ref0551077.15e3 to ref0551077.15e5 (p=1) 2017-11-14 09:45:28,349 [DEBUG] contig 2017-11-14 09:45:28,349 [DEBUG] who? ref0551077.15e5 ref0551077.15e3 2017-11-14 09:45:28,349 [DEBUG] Grabbing contig between nodes ref0551077.15e5 & ref0551077.15e3 - [trim 0, 0] 2017-11-14 09:45:28,349 [DEBUG] contig 6038 to 6388 2017-11-14 09:45:28,349 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,349 [DEBUG] Moving from ref0551077.15e5 to ref0551077.14e3 (p=1) 2017-11-14 09:45:28,349 [DEBUG] unimproved gap 2017-11-14 09:45:28,350 [DEBUG] Moving from ref0551077.14e3 to ref0551077.14e5 (p=1) 2017-11-14 09:45:28,350 [DEBUG] contig 2017-11-14 09:45:28,350 [DEBUG] who? ref0551077.14e5 ref0551077.14e3 2017-11-14 09:45:28,350 [DEBUG] Grabbing contig between nodes ref0551077.14e5 & ref0551077.14e3 - [trim 0, 0] 2017-11-14 09:45:28,350 [DEBUG] contig 5882 to 5973 2017-11-14 09:45:28,350 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,350 [DEBUG] Moving from ref0551077.14e5 to ref0551077.13e3 (p=1) 2017-11-14 09:45:28,350 [DEBUG] unimproved gap 2017-11-14 09:45:28,350 [DEBUG] Moving from ref0551077.13e3 to ref0551077.13e5 (p=1) 2017-11-14 09:45:28,350 [DEBUG] contig 2017-11-14 09:45:28,350 [DEBUG] who? ref0551077.13e5 ref0551077.13e3 2017-11-14 09:45:28,350 [DEBUG] Grabbing contig between nodes ref0551077.13e5 & ref0551077.13e3 - [trim 0, 0] 2017-11-14 09:45:28,350 [DEBUG] contig 5642 to 5773 2017-11-14 09:45:28,350 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,351 [DEBUG] Moving from ref0551077.13e5 to ref0551077.12e3 (p=1) 2017-11-14 09:45:28,351 [DEBUG] unimproved gap 2017-11-14 09:45:28,351 [DEBUG] Moving from ref0551077.12e3 to ref0551077.12e5 (p=1) 2017-11-14 09:45:28,351 [DEBUG] contig 2017-11-14 09:45:28,351 [DEBUG] who? ref0551077.12e5 ref0551077.12e3 2017-11-14 09:45:28,351 [DEBUG] Grabbing contig between nodes ref0551077.12e5 & ref0551077.12e3 - [trim 0, 0] 2017-11-14 09:45:28,351 [DEBUG] contig 5424 to 5485 2017-11-14 09:45:28,351 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,351 [DEBUG] Moving from ref0551077.12e5 to ref0551077.11e3 (p=1) 2017-11-14 09:45:28,351 [DEBUG] unimproved gap 2017-11-14 09:45:28,351 [DEBUG] Moving from ref0551077.11e3 to ref0551077.11e5 (p=1) 2017-11-14 09:45:28,351 [DEBUG] contig 2017-11-14 09:45:28,351 [DEBUG] who? ref0551077.11e5 ref0551077.11e3 2017-11-14 09:45:28,352 [DEBUG] Grabbing contig between nodes ref0551077.11e5 & ref0551077.11e3 - [trim 0, 0] 2017-11-14 09:45:28,352 [DEBUG] contig 5307 to 5362 2017-11-14 09:45:28,352 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,352 [DEBUG] Moving from ref0551077.11e5 to ref0551077.10e3 (p=1) 2017-11-14 09:45:28,352 [DEBUG] unimproved gap 2017-11-14 09:45:28,352 [DEBUG] Moving from ref0551077.10e3 to ref0551077.10e5 (p=1) 2017-11-14 09:45:28,352 [DEBUG] contig 2017-11-14 09:45:28,352 [DEBUG] who? ref0551077.10e5 ref0551077.10e3 2017-11-14 09:45:28,352 [DEBUG] Grabbing contig between nodes ref0551077.10e5 & ref0551077.10e3 - [trim 0, 0] 2017-11-14 09:45:28,352 [DEBUG] contig 4875 to 5165 2017-11-14 09:45:28,352 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,352 [DEBUG] Moving from ref0551077.10e5 to ref0551077.9e3 (p=1) 2017-11-14 09:45:28,352 [DEBUG] unimproved gap 2017-11-14 09:45:28,353 [DEBUG] Moving from ref0551077.9e3 to ref0551077.9e5 (p=1) 2017-11-14 09:45:28,353 [DEBUG] contig 2017-11-14 09:45:28,353 [DEBUG] who? ref0551077.9e5 ref0551077.9e3 2017-11-14 09:45:28,353 [DEBUG] Grabbing contig between nodes ref0551077.9e5 & ref0551077.9e3 - [trim 0, 0] 2017-11-14 09:45:28,353 [DEBUG] contig 4686 to 4757 2017-11-14 09:45:28,353 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,353 [DEBUG] Moving from ref0551077.9e5 to ref0551077.8e3 (p=1) 2017-11-14 09:45:28,353 [DEBUG] unimproved gap 2017-11-14 09:45:28,353 [DEBUG] Moving from ref0551077.8e3 to ref0551077.8e5 (p=1) 2017-11-14 09:45:28,353 [DEBUG] contig 2017-11-14 09:45:28,353 [DEBUG] who? ref0551077.8e5 ref0551077.8e3 2017-11-14 09:45:28,353 [DEBUG] Grabbing contig between nodes ref0551077.8e5 & ref0551077.8e3 - [trim 0, 0] 2017-11-14 09:45:28,353 [DEBUG] contig 4490 to 4625 2017-11-14 09:45:28,354 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,354 [DEBUG] Moving from ref0551077.8e5 to ref0551077.7e3 (p=1) 2017-11-14 09:45:28,354 [DEBUG] unimproved gap 2017-11-14 09:45:28,354 [DEBUG] Moving from ref0551077.7e3 to ref0551077.7e5 (p=1) 2017-11-14 09:45:28,354 [DEBUG] contig 2017-11-14 09:45:28,354 [DEBUG] who? ref0551077.7e5 ref0551077.7e3 2017-11-14 09:45:28,354 [DEBUG] Grabbing contig between nodes ref0551077.7e5 & ref0551077.7e3 - [trim 0, 0] 2017-11-14 09:45:28,354 [DEBUG] contig 4353 to 4389 2017-11-14 09:45:28,354 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,354 [DEBUG] Moving from ref0551077.7e5 to ref0551077.6e3 (p=1) 2017-11-14 09:45:28,354 [DEBUG] unimproved gap 2017-11-14 09:45:28,354 [DEBUG] Moving from ref0551077.6e3 to ref0551077.6e5 (p=1) 2017-11-14 09:45:28,354 [DEBUG] contig 2017-11-14 09:45:28,355 [DEBUG] who? ref0551077.6e5 ref0551077.6e3 2017-11-14 09:45:28,355 [DEBUG] Grabbing contig between nodes ref0551077.6e5 & ref0551077.6e3 - [trim 0, 0] 2017-11-14 09:45:28,355 [DEBUG] contig 3140 to 4289 2017-11-14 09:45:28,355 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,355 [DEBUG] Moving from ref0551077.6e5 to ref0551077.5e3 (p=1) 2017-11-14 09:45:28,355 [DEBUG] unimproved gap 2017-11-14 09:45:28,355 [DEBUG] Moving from ref0551077.5e3 to ref0551077.5e5 (p=1) 2017-11-14 09:45:28,355 [DEBUG] contig 2017-11-14 09:45:28,355 [DEBUG] who? ref0551077.5e5 ref0551077.5e3 2017-11-14 09:45:28,355 [DEBUG] Grabbing contig between nodes ref0551077.5e5 & ref0551077.5e3 - [trim 0, 0] 2017-11-14 09:45:28,355 [DEBUG] contig 2169 to 2818 2017-11-14 09:45:28,355 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,355 [DEBUG] Moving from ref0551077.5e5 to ref0551077.4e3 (p=1) 2017-11-14 09:45:28,355 [DEBUG] unimproved gap 2017-11-14 09:45:28,356 [DEBUG] Moving from ref0551077.4e3 to ref0551077.4e5 (p=1) 2017-11-14 09:45:28,356 [DEBUG] contig 2017-11-14 09:45:28,356 [DEBUG] who? ref0551077.4e5 ref0551077.4e3 2017-11-14 09:45:28,356 [DEBUG] Grabbing contig between nodes ref0551077.4e5 & ref0551077.4e3 - [trim 0, 0] 2017-11-14 09:45:28,356 [DEBUG] contig 1829 to 2007 2017-11-14 09:45:28,356 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,356 [DEBUG] Moving from ref0551077.4e5 to ref0551077.3e3 (p=1) 2017-11-14 09:45:28,356 [DEBUG] unimproved gap 2017-11-14 09:45:28,356 [DEBUG] Moving from ref0551077.3e3 to ref0551077.3e5 (p=1) 2017-11-14 09:45:28,356 [DEBUG] contig 2017-11-14 09:45:28,356 [DEBUG] who? ref0551077.3e5 ref0551077.3e3 2017-11-14 09:45:28,356 [DEBUG] Grabbing contig between nodes ref0551077.3e5 & ref0551077.3e3 - [trim 0, 0] 2017-11-14 09:45:28,356 [DEBUG] contig 1666 to 1712 2017-11-14 09:45:28,357 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,357 [DEBUG] Moving from ref0551077.3e5 to ref0551077.2e3 (p=1) 2017-11-14 09:45:28,357 [DEBUG] unimproved gap 2017-11-14 09:45:28,357 [DEBUG] Moving from ref0551077.2e3 to ref0551077.2e5 (p=1) 2017-11-14 09:45:28,357 [DEBUG] contig 2017-11-14 09:45:28,357 [DEBUG] who? ref0551077.2e5 ref0551077.2e3 2017-11-14 09:45:28,357 [DEBUG] Grabbing contig between nodes ref0551077.2e5 & ref0551077.2e3 - [trim 0, 0] 2017-11-14 09:45:28,357 [DEBUG] contig 1369 to 1540 2017-11-14 09:45:28,357 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,357 [DEBUG] Moving from ref0551077.2e5 to ref0551077.1e3 (p=1) 2017-11-14 09:45:28,357 [DEBUG] unimproved gap 2017-11-14 09:45:28,357 [DEBUG] Moving from ref0551077.1e3 to ref0551077.1e5 (p=1) 2017-11-14 09:45:28,357 [DEBUG] contig 2017-11-14 09:45:28,357 [DEBUG] who? ref0551077.1e5 ref0551077.1e3 2017-11-14 09:45:28,358 [DEBUG] Grabbing contig between nodes ref0551077.1e5 & ref0551077.1e3 - [trim 0, 0] 2017-11-14 09:45:28,358 [DEBUG] contig 135 to 1265 2017-11-14 09:45:28,358 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,358 [DEBUG] Moving from ref0551077.1e5 to ref0551077.0e3 (p=1) 2017-11-14 09:45:28,358 [DEBUG] unimproved gap 2017-11-14 09:45:28,358 [DEBUG] Moving from ref0551077.0e3 to ref0551077e5 (p=1) 2017-11-14 09:45:28,358 [DEBUG] contig 2017-11-14 09:45:28,358 [DEBUG] who? ref0551077e5 ref0551077.0e3 2017-11-14 09:45:28,358 [DEBUG] Grabbing contig between nodes ref0551077e5 & ref0551077.0e3 - [trim 0, 0] 2017-11-14 09:45:28,358 [DEBUG] contig 0 to 69 2017-11-14 09:45:28,358 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,358 [DEBUG] FirstFlipping 68 2017-11-14 09:45:28,359 [DEBUG] Contig 69 2017-11-14 09:45:28,361 [DEBUG] Moving from ref0717206e5 to ref0717206.0e3 (p=1) 2017-11-14 09:45:28,361 [DEBUG] contig 2017-11-14 09:45:28,361 [DEBUG] who? ref0717206e5 ref0717206.0e3 2017-11-14 09:45:28,361 [DEBUG] Grabbing contig between nodes ref0717206e5 & ref0717206.0e3 - [trim 0, 0] 2017-11-14 09:45:28,361 [DEBUG] contig 0 to 1829 2017-11-14 09:45:28,361 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,361 [DEBUG] Moving from ref0717206.0e3 to ref0717206.1e5 (p=1) 2017-11-14 09:45:28,361 [DEBUG] unimproved gap 2017-11-14 09:45:28,361 [DEBUG] Moving from ref0717206.1e5 to ref0717206.1e3 (p=1) 2017-11-14 09:45:28,361 [DEBUG] contig 2017-11-14 09:45:28,361 [DEBUG] who? ref0717206.1e5 ref0717206.1e3 2017-11-14 09:45:28,361 [DEBUG] Grabbing contig between nodes ref0717206.1e5 & ref0717206.1e3 - [trim 0, 0] 2017-11-14 09:45:28,362 [DEBUG] contig 1929 to 5013 2017-11-14 09:45:28,362 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,362 [DEBUG] Moving from ref0717206.1e3 to ref0717206.2e5 (p=1) 2017-11-14 09:45:28,362 [DEBUG] unimproved gap 2017-11-14 09:45:28,362 [DEBUG] Moving from ref0717206.2e5 to ref0717206.2e3 (p=1) 2017-11-14 09:45:28,362 [DEBUG] contig 2017-11-14 09:45:28,362 [DEBUG] who? ref0717206.2e5 ref0717206.2e3 2017-11-14 09:45:28,362 [DEBUG] Grabbing contig between nodes ref0717206.2e5 & ref0717206.2e3 - [trim 0, 0] 2017-11-14 09:45:28,362 [DEBUG] contig 5331 to 6250 2017-11-14 09:45:28,362 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,362 [DEBUG] Moving from ref0717206.2e3 to ref0717206.3e5 (p=1) 2017-11-14 09:45:28,362 [DEBUG] unimproved gap 2017-11-14 09:45:28,362 [DEBUG] Moving from ref0717206.3e5 to ref0717206.3e3 (p=1) 2017-11-14 09:45:28,363 [DEBUG] contig 2017-11-14 09:45:28,363 [DEBUG] who? ref0717206.3e5 ref0717206.3e3 2017-11-14 09:45:28,363 [DEBUG] Grabbing contig between nodes ref0717206.3e5 & ref0717206.3e3 - [trim 0, 0] 2017-11-14 09:45:28,363 [DEBUG] contig 6542 to 7217 2017-11-14 09:45:28,363 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,363 [DEBUG] Moving from ref0717206.3e3 to ref0717206.4e5 (p=1) 2017-11-14 09:45:28,363 [DEBUG] unimproved gap 2017-11-14 09:45:28,363 [DEBUG] Moving from ref0717206.4e5 to ref0717206.4e3 (p=1) 2017-11-14 09:45:28,363 [DEBUG] contig 2017-11-14 09:45:28,363 [DEBUG] who? ref0717206.4e5 ref0717206.4e3 2017-11-14 09:45:28,363 [DEBUG] Grabbing contig between nodes ref0717206.4e5 & ref0717206.4e3 - [trim 0, 0] 2017-11-14 09:45:28,363 [DEBUG] contig 7365 to 14377 2017-11-14 09:45:28,363 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,363 [DEBUG] Moving from ref0717206.4e3 to ref0717206.5e5 (p=1) 2017-11-14 09:45:28,364 [DEBUG] unimproved gap 2017-11-14 09:45:28,364 [DEBUG] Moving from ref0717206.5e5 to ref0717206.5e3 (p=1) 2017-11-14 09:45:28,364 [DEBUG] contig 2017-11-14 09:45:28,364 [DEBUG] who? ref0717206.5e5 ref0717206.5e3 2017-11-14 09:45:28,364 [DEBUG] Grabbing contig between nodes ref0717206.5e5 & ref0717206.5e3 - [trim 0, 0] 2017-11-14 09:45:28,364 [DEBUG] contig 14751 to 16011 2017-11-14 09:45:28,364 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,364 [DEBUG] Moving from ref0717206.5e3 to ref0717206.6e5 (p=1) 2017-11-14 09:45:28,364 [DEBUG] unimproved gap 2017-11-14 09:45:28,364 [DEBUG] Moving from ref0717206.6e5 to ref0717206.6e3 (p=1) 2017-11-14 09:45:28,364 [DEBUG] contig 2017-11-14 09:45:28,364 [DEBUG] who? ref0717206.6e5 ref0717206.6e3 2017-11-14 09:45:28,365 [DEBUG] Grabbing contig between nodes ref0717206.6e5 & ref0717206.6e3 - [trim 0, 0] 2017-11-14 09:45:28,365 [DEBUG] contig 16385 to 16448 2017-11-14 09:45:28,365 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,365 [DEBUG] Moving from ref0717206.6e3 to ref0717206.7e5 (p=1) 2017-11-14 09:45:28,365 [DEBUG] unimproved gap 2017-11-14 09:45:28,365 [DEBUG] Moving from ref0717206.7e5 to ref0717206.7e3 (p=1) 2017-11-14 09:45:28,365 [DEBUG] contig 2017-11-14 09:45:28,365 [DEBUG] who? ref0717206.7e5 ref0717206.7e3 2017-11-14 09:45:28,365 [DEBUG] Grabbing contig between nodes ref0717206.7e5 & ref0717206.7e3 - [trim 0, 0] 2017-11-14 09:45:28,365 [DEBUG] contig 16706 to 16975 2017-11-14 09:45:28,365 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,365 [DEBUG] Moving from ref0717206.7e3 to ref0717206.8e5 (p=1) 2017-11-14 09:45:28,365 [DEBUG] unimproved gap 2017-11-14 09:45:28,365 [DEBUG] Moving from ref0717206.8e5 to ref0717206.8e3 (p=1) 2017-11-14 09:45:28,366 [DEBUG] contig 2017-11-14 09:45:28,366 [DEBUG] who? ref0717206.8e5 ref0717206.8e3 2017-11-14 09:45:28,366 [DEBUG] Grabbing contig between nodes ref0717206.8e5 & ref0717206.8e3 - [trim 0, 0] 2017-11-14 09:45:28,366 [DEBUG] contig 17342 to 17852 2017-11-14 09:45:28,366 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,366 [DEBUG] Moving from ref0717206.8e3 to ref0717206.9e5 (p=1) 2017-11-14 09:45:28,366 [DEBUG] unimproved gap 2017-11-14 09:45:28,366 [DEBUG] Moving from ref0717206.9e5 to ref0717206.9e3 (p=1) 2017-11-14 09:45:28,366 [DEBUG] contig 2017-11-14 09:45:28,366 [DEBUG] who? ref0717206.9e5 ref0717206.9e3 2017-11-14 09:45:28,366 [DEBUG] Grabbing contig between nodes ref0717206.9e5 & ref0717206.9e3 - [trim 0, 0] 2017-11-14 09:45:28,366 [DEBUG] contig 18049 to 18481 2017-11-14 09:45:28,367 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,367 [DEBUG] Moving from ref0717206.9e3 to ref0717206.10e5 (p=1) 2017-11-14 09:45:28,367 [DEBUG] unimproved gap 2017-11-14 09:45:28,367 [DEBUG] Moving from ref0717206.10e5 to ref0717206.10e3 (p=1) 2017-11-14 09:45:28,367 [DEBUG] contig 2017-11-14 09:45:28,367 [DEBUG] who? ref0717206.10e5 ref0717206.10e3 2017-11-14 09:45:28,367 [DEBUG] Grabbing contig between nodes ref0717206.10e5 & ref0717206.10e3 - [trim 0, 0] 2017-11-14 09:45:28,367 [DEBUG] contig 18636 to 21098 2017-11-14 09:45:28,367 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,367 [DEBUG] Moving from ref0717206.10e3 to ref0717206.11e5 (p=1) 2017-11-14 09:45:28,367 [DEBUG] unimproved gap 2017-11-14 09:45:28,367 [DEBUG] Moving from ref0717206.11e5 to ref0717206.11e3 (p=1) 2017-11-14 09:45:28,367 [DEBUG] contig 2017-11-14 09:45:28,368 [DEBUG] who? ref0717206.11e5 ref0717206.11e3 2017-11-14 09:45:28,368 [DEBUG] Grabbing contig between nodes ref0717206.11e5 & ref0717206.11e3 - [trim 0, 0] 2017-11-14 09:45:28,368 [DEBUG] contig 21364 to 27118 2017-11-14 09:45:28,368 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,368 [DEBUG] Moving from ref0717206.11e3 to ref0717206.12e5 (p=1) 2017-11-14 09:45:28,368 [DEBUG] unimproved gap 2017-11-14 09:45:28,368 [DEBUG] Moving from ref0717206.12e5 to ref0717206.12e3 (p=1) 2017-11-14 09:45:28,368 [DEBUG] contig 2017-11-14 09:45:28,368 [DEBUG] who? ref0717206.12e5 ref0717206.12e3 2017-11-14 09:45:28,368 [DEBUG] Grabbing contig between nodes ref0717206.12e5 & ref0717206.12e3 - [trim 0, 0] 2017-11-14 09:45:28,368 [DEBUG] contig 27323 to 41627 2017-11-14 09:45:28,368 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,368 [DEBUG] Moving from ref0717206.12e3 to ref0717206.13e5 (p=1) 2017-11-14 09:45:28,368 [DEBUG] unimproved gap 2017-11-14 09:45:28,369 [DEBUG] Moving from ref0717206.13e5 to ref0717206.13e3 (p=1) 2017-11-14 09:45:28,369 [DEBUG] contig 2017-11-14 09:45:28,369 [DEBUG] who? ref0717206.13e5 ref0717206.13e3 2017-11-14 09:45:28,369 [DEBUG] Grabbing contig between nodes ref0717206.13e5 & ref0717206.13e3 - [trim 0, 0] 2017-11-14 09:45:28,369 [DEBUG] contig 42250 to 42992 2017-11-14 09:45:28,369 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,369 [DEBUG] Moving from ref0717206.13e3 to ref0717206.14e5 (p=1) 2017-11-14 09:45:28,369 [DEBUG] unimproved gap 2017-11-14 09:45:28,369 [DEBUG] Moving from ref0717206.14e5 to ref0717206.14e3 (p=1) 2017-11-14 09:45:28,369 [DEBUG] contig 2017-11-14 09:45:28,369 [DEBUG] who? ref0717206.14e5 ref0717206.14e3 2017-11-14 09:45:28,369 [DEBUG] Grabbing contig between nodes ref0717206.14e5 & ref0717206.14e3 - [trim 0, 0] 2017-11-14 09:45:28,369 [DEBUG] contig 43072 to 45544 2017-11-14 09:45:28,370 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,370 [DEBUG] Moving from ref0717206.14e3 to ref0717206.15e5 (p=1) 2017-11-14 09:45:28,370 [DEBUG] unimproved gap 2017-11-14 09:45:28,370 [DEBUG] Moving from ref0717206.15e5 to ref0717206.15e3 (p=1) 2017-11-14 09:45:28,370 [DEBUG] contig 2017-11-14 09:45:28,370 [DEBUG] who? ref0717206.15e5 ref0717206.15e3 2017-11-14 09:45:28,370 [DEBUG] Grabbing contig between nodes ref0717206.15e5 & ref0717206.15e3 - [trim 0, 0] 2017-11-14 09:45:28,370 [DEBUG] contig 46221 to 47817 2017-11-14 09:45:28,370 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,370 [DEBUG] Moving from ref0717206.15e3 to ref0717206.16e5 (p=1) 2017-11-14 09:45:28,370 [DEBUG] unimproved gap 2017-11-14 09:45:28,370 [DEBUG] Moving from ref0717206.16e5 to ref0717206.16e3 (p=1) 2017-11-14 09:45:28,370 [DEBUG] contig 2017-11-14 09:45:28,371 [DEBUG] who? ref0717206.16e5 ref0717206.16e3 2017-11-14 09:45:28,371 [DEBUG] Grabbing contig between nodes ref0717206.16e5 & ref0717206.16e3 - [trim 0, 0] 2017-11-14 09:45:28,371 [DEBUG] contig 48094 to 49777 2017-11-14 09:45:28,371 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,371 [DEBUG] Moving from ref0717206.16e3 to ref0717206.17e5 (p=1) 2017-11-14 09:45:28,371 [DEBUG] unimproved gap 2017-11-14 09:45:28,371 [DEBUG] Moving from ref0717206.17e5 to ref0717206e3 (p=1) 2017-11-14 09:45:28,371 [DEBUG] contig 2017-11-14 09:45:28,371 [DEBUG] who? ref0717206.17e5 ref0717206e3 2017-11-14 09:45:28,371 [DEBUG] Grabbing contig between nodes ref0717206.17e5 & ref0717206e3 - [trim 0, 0] 2017-11-14 09:45:28,371 [DEBUG] contig 49916 to 49982 2017-11-14 09:45:28,371 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,372 [DEBUG] Contig 70 2017-11-14 09:45:28,374 [DEBUG] Moving from ref0372283e5 to ref0372283.0e3 (p=1) 2017-11-14 09:45:28,374 [DEBUG] contig 2017-11-14 09:45:28,374 [DEBUG] who? ref0372283e5 ref0372283.0e3 2017-11-14 09:45:28,374 [DEBUG] Grabbing contig between nodes ref0372283e5 & ref0372283.0e3 - [trim 0, 0] 2017-11-14 09:45:28,374 [DEBUG] contig 0 to 260 2017-11-14 09:45:28,374 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,374 [DEBUG] Moving from ref0372283.0e3 to ref0372283.1e5 (p=1) 2017-11-14 09:45:28,374 [DEBUG] unimproved gap 2017-11-14 09:45:28,374 [DEBUG] Moving from ref0372283.1e5 to ref0372283.1e3 (p=1) 2017-11-14 09:45:28,374 [DEBUG] contig 2017-11-14 09:45:28,374 [DEBUG] who? ref0372283.1e5 ref0372283.1e3 2017-11-14 09:45:28,374 [DEBUG] Grabbing contig between nodes ref0372283.1e5 & ref0372283.1e3 - [trim 0, 0] 2017-11-14 09:45:28,375 [DEBUG] contig 417 to 693 2017-11-14 09:45:28,375 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,375 [DEBUG] Moving from ref0372283.1e3 to ref0372283.2e5 (p=1) 2017-11-14 09:45:28,375 [DEBUG] unimproved gap 2017-11-14 09:45:28,375 [DEBUG] Moving from ref0372283.2e5 to ref0372283.2e3 (p=1) 2017-11-14 09:45:28,375 [DEBUG] contig 2017-11-14 09:45:28,375 [DEBUG] who? ref0372283.2e5 ref0372283.2e3 2017-11-14 09:45:28,375 [DEBUG] Grabbing contig between nodes ref0372283.2e5 & ref0372283.2e3 - [trim 0, 0] 2017-11-14 09:45:28,375 [DEBUG] contig 792 to 849 2017-11-14 09:45:28,375 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,375 [DEBUG] Moving from ref0372283.2e3 to ref0372283.3e5 (p=1) 2017-11-14 09:45:28,375 [DEBUG] unimproved gap 2017-11-14 09:45:28,375 [DEBUG] Moving from ref0372283.3e5 to ref0372283.3e3 (p=1) 2017-11-14 09:45:28,376 [DEBUG] contig 2017-11-14 09:45:28,376 [DEBUG] who? ref0372283.3e5 ref0372283.3e3 2017-11-14 09:45:28,376 [DEBUG] Grabbing contig between nodes ref0372283.3e5 & ref0372283.3e3 - [trim 0, 0] 2017-11-14 09:45:28,376 [DEBUG] contig 957 to 1551 2017-11-14 09:45:28,376 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,376 [DEBUG] Moving from ref0372283.3e3 to ref0372283.4e5 (p=1) 2017-11-14 09:45:28,376 [DEBUG] unimproved gap 2017-11-14 09:45:28,376 [DEBUG] Moving from ref0372283.4e5 to ref0372283.4e3 (p=1) 2017-11-14 09:45:28,376 [DEBUG] contig 2017-11-14 09:45:28,376 [DEBUG] who? ref0372283.4e5 ref0372283.4e3 2017-11-14 09:45:28,376 [DEBUG] Grabbing contig between nodes ref0372283.4e5 & ref0372283.4e3 - [trim 0, 0] 2017-11-14 09:45:28,376 [DEBUG] contig 1621 to 3427 2017-11-14 09:45:28,376 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,377 [DEBUG] Moving from ref0372283.4e3 to ref0372283.5e5 (p=1) 2017-11-14 09:45:28,377 [DEBUG] unimproved gap 2017-11-14 09:45:28,377 [DEBUG] Moving from ref0372283.5e5 to ref0372283.5e3 (p=1) 2017-11-14 09:45:28,377 [DEBUG] contig 2017-11-14 09:45:28,377 [DEBUG] who? ref0372283.5e5 ref0372283.5e3 2017-11-14 09:45:28,377 [DEBUG] Grabbing contig between nodes ref0372283.5e5 & ref0372283.5e3 - [trim 0, 0] 2017-11-14 09:45:28,377 [DEBUG] contig 3589 to 3616 2017-11-14 09:45:28,377 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,377 [DEBUG] Moving from ref0372283.5e3 to ref0372283.6e5 (p=1) 2017-11-14 09:45:28,377 [DEBUG] unimproved gap 2017-11-14 09:45:28,377 [DEBUG] Moving from ref0372283.6e5 to ref0372283.6e3 (p=1) 2017-11-14 09:45:28,377 [DEBUG] contig 2017-11-14 09:45:28,377 [DEBUG] who? ref0372283.6e5 ref0372283.6e3 2017-11-14 09:45:28,377 [DEBUG] Grabbing contig between nodes ref0372283.6e5 & ref0372283.6e3 - [trim 0, 0] 2017-11-14 09:45:28,378 [DEBUG] contig 3756 to 3808 2017-11-14 09:45:28,378 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,378 [DEBUG] Moving from ref0372283.6e3 to ref0372283.7e5 (p=1) 2017-11-14 09:45:28,378 [DEBUG] unimproved gap 2017-11-14 09:45:28,378 [DEBUG] Moving from ref0372283.7e5 to ref0372283.7e3 (p=1) 2017-11-14 09:45:28,378 [DEBUG] contig 2017-11-14 09:45:28,378 [DEBUG] who? ref0372283.7e5 ref0372283.7e3 2017-11-14 09:45:28,378 [DEBUG] Grabbing contig between nodes ref0372283.7e5 & ref0372283.7e3 - [trim 0, 0] 2017-11-14 09:45:28,378 [DEBUG] contig 3945 to 4034 2017-11-14 09:45:28,378 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,378 [DEBUG] Moving from ref0372283.7e3 to ref0372283.8e5 (p=1) 2017-11-14 09:45:28,378 [DEBUG] unimproved gap 2017-11-14 09:45:28,378 [DEBUG] Moving from ref0372283.8e5 to ref0372283.8e3 (p=1) 2017-11-14 09:45:28,379 [DEBUG] contig 2017-11-14 09:45:28,379 [DEBUG] who? ref0372283.8e5 ref0372283.8e3 2017-11-14 09:45:28,379 [DEBUG] Grabbing contig between nodes ref0372283.8e5 & ref0372283.8e3 - [trim 0, 0] 2017-11-14 09:45:28,379 [DEBUG] contig 4140 to 6304 2017-11-14 09:45:28,379 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,379 [DEBUG] Moving from ref0372283.8e3 to ref0372283.9e5 (p=1) 2017-11-14 09:45:28,379 [DEBUG] unimproved gap 2017-11-14 09:45:28,379 [DEBUG] Moving from ref0372283.9e5 to ref0372283.9e3 (p=1) 2017-11-14 09:45:28,379 [DEBUG] contig 2017-11-14 09:45:28,379 [DEBUG] who? ref0372283.9e5 ref0372283.9e3 2017-11-14 09:45:28,379 [DEBUG] Grabbing contig between nodes ref0372283.9e5 & ref0372283.9e3 - [trim 0, 0] 2017-11-14 09:45:28,379 [DEBUG] contig 6415 to 6458 2017-11-14 09:45:28,379 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,380 [DEBUG] Moving from ref0372283.9e3 to ref0372283.10e5 (p=1) 2017-11-14 09:45:28,380 [DEBUG] unimproved gap 2017-11-14 09:45:28,380 [DEBUG] Moving from ref0372283.10e5 to ref0372283.10e3 (p=1) 2017-11-14 09:45:28,380 [DEBUG] contig 2017-11-14 09:45:28,380 [DEBUG] who? ref0372283.10e5 ref0372283.10e3 2017-11-14 09:45:28,380 [DEBUG] Grabbing contig between nodes ref0372283.10e5 & ref0372283.10e3 - [trim 0, 0] 2017-11-14 09:45:28,380 [DEBUG] contig 6540 to 7019 2017-11-14 09:45:28,380 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,380 [DEBUG] Moving from ref0372283.10e3 to ref0372283.11e5 (p=1) 2017-11-14 09:45:28,380 [DEBUG] unimproved gap 2017-11-14 09:45:28,380 [DEBUG] Moving from ref0372283.11e5 to ref0372283.11e3 (p=1) 2017-11-14 09:45:28,380 [DEBUG] contig 2017-11-14 09:45:28,380 [DEBUG] who? ref0372283.11e5 ref0372283.11e3 2017-11-14 09:45:28,381 [DEBUG] Grabbing contig between nodes ref0372283.11e5 & ref0372283.11e3 - [trim 0, 0] 2017-11-14 09:45:28,381 [DEBUG] contig 7093 to 10785 2017-11-14 09:45:28,381 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,381 [DEBUG] Moving from ref0372283.11e3 to ref0372283.12e5 (p=1) 2017-11-14 09:45:28,381 [DEBUG] unimproved gap 2017-11-14 09:45:28,381 [DEBUG] Moving from ref0372283.12e5 to ref0372283.12e3 (p=1) 2017-11-14 09:45:28,381 [DEBUG] contig 2017-11-14 09:45:28,381 [DEBUG] who? ref0372283.12e5 ref0372283.12e3 2017-11-14 09:45:28,381 [DEBUG] Grabbing contig between nodes ref0372283.12e5 & ref0372283.12e3 - [trim 0, 0] 2017-11-14 09:45:28,381 [DEBUG] contig 10986 to 11670 2017-11-14 09:45:28,381 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,381 [DEBUG] Moving from ref0372283.12e3 to ref0372283.13e5 (p=1) 2017-11-14 09:45:28,381 [DEBUG] unimproved gap 2017-11-14 09:45:28,382 [DEBUG] Moving from ref0372283.13e5 to ref0372283.13e3 (p=1) 2017-11-14 09:45:28,382 [DEBUG] contig 2017-11-14 09:45:28,382 [DEBUG] who? ref0372283.13e5 ref0372283.13e3 2017-11-14 09:45:28,382 [DEBUG] Grabbing contig between nodes ref0372283.13e5 & ref0372283.13e3 - [trim 0, 0] 2017-11-14 09:45:28,382 [DEBUG] contig 11902 to 12045 2017-11-14 09:45:28,382 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,382 [DEBUG] Moving from ref0372283.13e3 to ref0372283.14e5 (p=1) 2017-11-14 09:45:28,382 [DEBUG] unimproved gap 2017-11-14 09:45:28,382 [DEBUG] Moving from ref0372283.14e5 to ref0372283.14e3 (p=1) 2017-11-14 09:45:28,382 [DEBUG] contig 2017-11-14 09:45:28,382 [DEBUG] who? ref0372283.14e5 ref0372283.14e3 2017-11-14 09:45:28,382 [DEBUG] Grabbing contig between nodes ref0372283.14e5 & ref0372283.14e3 - [trim 0, 0] 2017-11-14 09:45:28,382 [DEBUG] contig 12134 to 12379 2017-11-14 09:45:28,382 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,383 [DEBUG] Moving from ref0372283.14e3 to ref0372283.15e5 (p=1) 2017-11-14 09:45:28,383 [DEBUG] unimproved gap 2017-11-14 09:45:28,383 [DEBUG] Moving from ref0372283.15e5 to ref0372283.15e3 (p=1) 2017-11-14 09:45:28,383 [DEBUG] contig 2017-11-14 09:45:28,383 [DEBUG] who? ref0372283.15e5 ref0372283.15e3 2017-11-14 09:45:28,383 [DEBUG] Grabbing contig between nodes ref0372283.15e5 & ref0372283.15e3 - [trim 0, 0] 2017-11-14 09:45:28,383 [DEBUG] contig 12543 to 12615 2017-11-14 09:45:28,383 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,383 [DEBUG] Moving from ref0372283.15e3 to ref0372283.16e5 (p=1) 2017-11-14 09:45:28,383 [DEBUG] unimproved gap 2017-11-14 09:45:28,383 [DEBUG] Moving from ref0372283.16e5 to ref0372283.16e3 (p=1) 2017-11-14 09:45:28,383 [DEBUG] contig 2017-11-14 09:45:28,383 [DEBUG] who? ref0372283.16e5 ref0372283.16e3 2017-11-14 09:45:28,384 [DEBUG] Grabbing contig between nodes ref0372283.16e5 & ref0372283.16e3 - [trim 0, 0] 2017-11-14 09:45:28,384 [DEBUG] contig 12640 to 12808 2017-11-14 09:45:28,384 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,384 [DEBUG] Moving from ref0372283.16e3 to ref0372283.17e5 (p=1) 2017-11-14 09:45:28,384 [DEBUG] unimproved gap 2017-11-14 09:45:28,384 [DEBUG] Moving from ref0372283.17e5 to ref0372283e3 (p=1) 2017-11-14 09:45:28,384 [DEBUG] contig 2017-11-14 09:45:28,384 [DEBUG] who? ref0372283.17e5 ref0372283e3 2017-11-14 09:45:28,384 [DEBUG] Grabbing contig between nodes ref0372283.17e5 & ref0372283e3 - [trim 0, 0] 2017-11-14 09:45:28,384 [DEBUG] contig 12929 to 12978 2017-11-14 09:45:28,384 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,384 [DEBUG] Contig 71 2017-11-14 09:45:28,386 [DEBUG] Moving from ref0443390e3 to ref0443390.17e5 (p=1) 2017-11-14 09:45:28,386 [DEBUG] contig 2017-11-14 09:45:28,387 [DEBUG] who? ref0443390.17e5 ref0443390e3 2017-11-14 09:45:28,387 [DEBUG] Grabbing contig between nodes ref0443390.17e5 & ref0443390e3 - [trim 0, 0] 2017-11-14 09:45:28,387 [DEBUG] contig 26185 to 28431 2017-11-14 09:45:28,387 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,387 [DEBUG] Moving from ref0443390.17e5 to ref0443390.16e3 (p=1) 2017-11-14 09:45:28,387 [DEBUG] unimproved gap 2017-11-14 09:45:28,387 [DEBUG] Moving from ref0443390.16e3 to ref0443390.16e5 (p=1) 2017-11-14 09:45:28,387 [DEBUG] contig 2017-11-14 09:45:28,387 [DEBUG] who? ref0443390.16e5 ref0443390.16e3 2017-11-14 09:45:28,387 [DEBUG] Grabbing contig between nodes ref0443390.16e5 & ref0443390.16e3 - [trim 0, 0] 2017-11-14 09:45:28,387 [DEBUG] contig 21800 to 26119 2017-11-14 09:45:28,387 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,387 [DEBUG] Moving from ref0443390.16e5 to ref0443390.15e3 (p=1) 2017-11-14 09:45:28,388 [DEBUG] unimproved gap 2017-11-14 09:45:28,388 [DEBUG] Moving from ref0443390.15e3 to ref0443390.15e5 (p=1) 2017-11-14 09:45:28,388 [DEBUG] contig 2017-11-14 09:45:28,388 [DEBUG] who? ref0443390.15e5 ref0443390.15e3 2017-11-14 09:45:28,388 [DEBUG] Grabbing contig between nodes ref0443390.15e5 & ref0443390.15e3 - [trim 0, 0] 2017-11-14 09:45:28,388 [DEBUG] contig 21611 to 21650 2017-11-14 09:45:28,388 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,388 [DEBUG] Moving from ref0443390.15e5 to ref0443390.14e3 (p=1) 2017-11-14 09:45:28,388 [DEBUG] unimproved gap 2017-11-14 09:45:28,388 [DEBUG] Moving from ref0443390.14e3 to ref0443390.14e5 (p=1) 2017-11-14 09:45:28,388 [DEBUG] contig 2017-11-14 09:45:28,388 [DEBUG] who? ref0443390.14e5 ref0443390.14e3 2017-11-14 09:45:28,389 [DEBUG] Grabbing contig between nodes ref0443390.14e5 & ref0443390.14e3 - [trim 0, 0] 2017-11-14 09:45:28,389 [DEBUG] contig 21016 to 21560 2017-11-14 09:45:28,389 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,389 [DEBUG] Moving from ref0443390.14e5 to ref0443390.13e3 (p=1) 2017-11-14 09:45:28,389 [DEBUG] unimproved gap 2017-11-14 09:45:28,389 [DEBUG] Moving from ref0443390.13e3 to ref0443390.13e5 (p=1) 2017-11-14 09:45:28,389 [DEBUG] contig 2017-11-14 09:45:28,389 [DEBUG] who? ref0443390.13e5 ref0443390.13e3 2017-11-14 09:45:28,389 [DEBUG] Grabbing contig between nodes ref0443390.13e5 & ref0443390.13e3 - [trim 0, 0] 2017-11-14 09:45:28,389 [DEBUG] contig 20456 to 20873 2017-11-14 09:45:28,389 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,389 [DEBUG] Moving from ref0443390.13e5 to ref0443390.12e3 (p=1) 2017-11-14 09:45:28,389 [DEBUG] unimproved gap 2017-11-14 09:45:28,389 [DEBUG] Moving from ref0443390.12e3 to ref0443390.12e5 (p=1) 2017-11-14 09:45:28,390 [DEBUG] contig 2017-11-14 09:45:28,390 [DEBUG] who? ref0443390.12e5 ref0443390.12e3 2017-11-14 09:45:28,390 [DEBUG] Grabbing contig between nodes ref0443390.12e5 & ref0443390.12e3 - [trim 0, 0] 2017-11-14 09:45:28,390 [DEBUG] contig 18945 to 20421 2017-11-14 09:45:28,390 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,390 [DEBUG] Moving from ref0443390.12e5 to ref0443390.11e3 (p=1) 2017-11-14 09:45:28,390 [DEBUG] unimproved gap 2017-11-14 09:45:28,390 [DEBUG] Moving from ref0443390.11e3 to ref0443390.11e5 (p=1) 2017-11-14 09:45:28,390 [DEBUG] contig 2017-11-14 09:45:28,390 [DEBUG] who? ref0443390.11e5 ref0443390.11e3 2017-11-14 09:45:28,390 [DEBUG] Grabbing contig between nodes ref0443390.11e5 & ref0443390.11e3 - [trim 0, 0] 2017-11-14 09:45:28,390 [DEBUG] contig 18575 to 18609 2017-11-14 09:45:28,390 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,391 [DEBUG] Moving from ref0443390.11e5 to ref0443390.10e3 (p=1) 2017-11-14 09:45:28,391 [DEBUG] unimproved gap 2017-11-14 09:45:28,391 [DEBUG] Moving from ref0443390.10e3 to ref0443390.10e5 (p=1) 2017-11-14 09:45:28,391 [DEBUG] contig 2017-11-14 09:45:28,391 [DEBUG] who? ref0443390.10e5 ref0443390.10e3 2017-11-14 09:45:28,391 [DEBUG] Grabbing contig between nodes ref0443390.10e5 & ref0443390.10e3 - [trim 0, 0] 2017-11-14 09:45:28,391 [DEBUG] contig 15830 to 18294 2017-11-14 09:45:28,391 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,391 [DEBUG] Moving from ref0443390.10e5 to ref0443390.9e3 (p=1) 2017-11-14 09:45:28,391 [DEBUG] unimproved gap 2017-11-14 09:45:28,391 [DEBUG] Moving from ref0443390.9e3 to ref0443390.9e5 (p=1) 2017-11-14 09:45:28,391 [DEBUG] contig 2017-11-14 09:45:28,391 [DEBUG] who? ref0443390.9e5 ref0443390.9e3 2017-11-14 09:45:28,392 [DEBUG] Grabbing contig between nodes ref0443390.9e5 & ref0443390.9e3 - [trim 0, 0] 2017-11-14 09:45:28,392 [DEBUG] contig 15404 to 15603 2017-11-14 09:45:28,392 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,392 [DEBUG] Moving from ref0443390.9e5 to ref0443390.8e3 (p=1) 2017-11-14 09:45:28,392 [DEBUG] unimproved gap 2017-11-14 09:45:28,392 [DEBUG] Moving from ref0443390.8e3 to ref0443390.8e5 (p=1) 2017-11-14 09:45:28,392 [DEBUG] contig 2017-11-14 09:45:28,392 [DEBUG] who? ref0443390.8e5 ref0443390.8e3 2017-11-14 09:45:28,392 [DEBUG] Grabbing contig between nodes ref0443390.8e5 & ref0443390.8e3 - [trim 0, 0] 2017-11-14 09:45:28,392 [DEBUG] contig 7786 to 15286 2017-11-14 09:45:28,392 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,392 [DEBUG] Moving from ref0443390.8e5 to ref0443390.7e3 (p=1) 2017-11-14 09:45:28,392 [DEBUG] unimproved gap 2017-11-14 09:45:28,393 [DEBUG] Moving from ref0443390.7e3 to ref0443390.7e5 (p=1) 2017-11-14 09:45:28,393 [DEBUG] contig 2017-11-14 09:45:28,393 [DEBUG] who? ref0443390.7e5 ref0443390.7e3 2017-11-14 09:45:28,393 [DEBUG] Grabbing contig between nodes ref0443390.7e5 & ref0443390.7e3 - [trim 0, 0] 2017-11-14 09:45:28,393 [DEBUG] contig 7425 to 7672 2017-11-14 09:45:28,393 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,393 [DEBUG] Moving from ref0443390.7e5 to ref0443390.6e3 (p=1) 2017-11-14 09:45:28,393 [DEBUG] unimproved gap 2017-11-14 09:45:28,393 [DEBUG] Moving from ref0443390.6e3 to ref0443390.6e5 (p=1) 2017-11-14 09:45:28,393 [DEBUG] contig 2017-11-14 09:45:28,393 [DEBUG] who? ref0443390.6e5 ref0443390.6e3 2017-11-14 09:45:28,393 [DEBUG] Grabbing contig between nodes ref0443390.6e5 & ref0443390.6e3 - [trim 0, 0] 2017-11-14 09:45:28,393 [DEBUG] contig 4877 to 7296 2017-11-14 09:45:28,394 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,394 [DEBUG] Moving from ref0443390.6e5 to ref0443390.5e3 (p=1) 2017-11-14 09:45:28,394 [DEBUG] unimproved gap 2017-11-14 09:45:28,394 [DEBUG] Moving from ref0443390.5e3 to ref0443390.5e5 (p=1) 2017-11-14 09:45:28,394 [DEBUG] contig 2017-11-14 09:45:28,394 [DEBUG] who? ref0443390.5e5 ref0443390.5e3 2017-11-14 09:45:28,394 [DEBUG] Grabbing contig between nodes ref0443390.5e5 & ref0443390.5e3 - [trim 0, 0] 2017-11-14 09:45:28,394 [DEBUG] contig 4332 to 4515 2017-11-14 09:45:28,394 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,394 [DEBUG] Moving from ref0443390.5e5 to ref0443390.4e3 (p=1) 2017-11-14 09:45:28,394 [DEBUG] unimproved gap 2017-11-14 09:45:28,394 [DEBUG] Moving from ref0443390.4e3 to ref0443390.4e5 (p=1) 2017-11-14 09:45:28,394 [DEBUG] contig 2017-11-14 09:45:28,395 [DEBUG] who? ref0443390.4e5 ref0443390.4e3 2017-11-14 09:45:28,395 [DEBUG] Grabbing contig between nodes ref0443390.4e5 & ref0443390.4e3 - [trim 0, 0] 2017-11-14 09:45:28,395 [DEBUG] contig 2587 to 3777 2017-11-14 09:45:28,395 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,395 [DEBUG] Moving from ref0443390.4e5 to ref0443390.3e3 (p=1) 2017-11-14 09:45:28,395 [DEBUG] unimproved gap 2017-11-14 09:45:28,395 [DEBUG] Moving from ref0443390.3e3 to ref0443390.3e5 (p=1) 2017-11-14 09:45:28,395 [DEBUG] contig 2017-11-14 09:45:28,395 [DEBUG] who? ref0443390.3e5 ref0443390.3e3 2017-11-14 09:45:28,395 [DEBUG] Grabbing contig between nodes ref0443390.3e5 & ref0443390.3e3 - [trim 0, 0] 2017-11-14 09:45:28,395 [DEBUG] contig 2248 to 2444 2017-11-14 09:45:28,395 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,395 [DEBUG] Moving from ref0443390.3e5 to ref0443390.2e3 (p=1) 2017-11-14 09:45:28,396 [DEBUG] unimproved gap 2017-11-14 09:45:28,396 [DEBUG] Moving from ref0443390.2e3 to ref0443390.2e5 (p=1) 2017-11-14 09:45:28,396 [DEBUG] contig 2017-11-14 09:45:28,396 [DEBUG] who? ref0443390.2e5 ref0443390.2e3 2017-11-14 09:45:28,396 [DEBUG] Grabbing contig between nodes ref0443390.2e5 & ref0443390.2e3 - [trim 0, 0] 2017-11-14 09:45:28,396 [DEBUG] contig 1537 to 1921 2017-11-14 09:45:28,396 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,396 [DEBUG] Moving from ref0443390.2e5 to ref0443390.1e3 (p=1) 2017-11-14 09:45:28,396 [DEBUG] unimproved gap 2017-11-14 09:45:28,396 [DEBUG] Moving from ref0443390.1e3 to ref0443390.1e5 (p=1) 2017-11-14 09:45:28,396 [DEBUG] contig 2017-11-14 09:45:28,396 [DEBUG] who? ref0443390.1e5 ref0443390.1e3 2017-11-14 09:45:28,396 [DEBUG] Grabbing contig between nodes ref0443390.1e5 & ref0443390.1e3 - [trim 0, 0] 2017-11-14 09:45:28,397 [DEBUG] contig 585 to 1099 2017-11-14 09:45:28,397 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,397 [DEBUG] Moving from ref0443390.1e5 to ref0443390.0e3 (p=1) 2017-11-14 09:45:28,397 [DEBUG] unimproved gap 2017-11-14 09:45:28,397 [DEBUG] Moving from ref0443390.0e3 to ref0443390e5 (p=1) 2017-11-14 09:45:28,397 [DEBUG] contig 2017-11-14 09:45:28,397 [DEBUG] who? ref0443390e5 ref0443390.0e3 2017-11-14 09:45:28,397 [DEBUG] Grabbing contig between nodes ref0443390e5 & ref0443390.0e3 - [trim 0, 0] 2017-11-14 09:45:28,397 [DEBUG] contig 0 to 512 2017-11-14 09:45:28,397 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,397 [DEBUG] FirstFlipping 71 2017-11-14 09:45:28,398 [DEBUG] Contig 72 2017-11-14 09:45:28,400 [DEBUG] Moving from ref0502055e3 to ref0502055.17e5 (p=1) 2017-11-14 09:45:28,400 [DEBUG] contig 2017-11-14 09:45:28,400 [DEBUG] who? ref0502055.17e5 ref0502055e3 2017-11-14 09:45:28,400 [DEBUG] Grabbing contig between nodes ref0502055.17e5 & ref0502055e3 - [trim 0, 0] 2017-11-14 09:45:28,400 [DEBUG] contig 23543 to 27739 2017-11-14 09:45:28,400 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,400 [DEBUG] Moving from ref0502055.17e5 to ref0502055.16e3 (p=1) 2017-11-14 09:45:28,400 [DEBUG] unimproved gap 2017-11-14 09:45:28,400 [DEBUG] Moving from ref0502055.16e3 to ref0502055.16e5 (p=1) 2017-11-14 09:45:28,400 [DEBUG] contig 2017-11-14 09:45:28,400 [DEBUG] who? ref0502055.16e5 ref0502055.16e3 2017-11-14 09:45:28,400 [DEBUG] Grabbing contig between nodes ref0502055.16e5 & ref0502055.16e3 - [trim 0, 0] 2017-11-14 09:45:28,401 [DEBUG] contig 23083 to 23435 2017-11-14 09:45:28,401 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,401 [DEBUG] Moving from ref0502055.16e5 to ref0502055.15e3 (p=1) 2017-11-14 09:45:28,401 [DEBUG] unimproved gap 2017-11-14 09:45:28,401 [DEBUG] Moving from ref0502055.15e3 to ref0502055.15e5 (p=1) 2017-11-14 09:45:28,401 [DEBUG] contig 2017-11-14 09:45:28,401 [DEBUG] who? ref0502055.15e5 ref0502055.15e3 2017-11-14 09:45:28,401 [DEBUG] Grabbing contig between nodes ref0502055.15e5 & ref0502055.15e3 - [trim 0, 0] 2017-11-14 09:45:28,401 [DEBUG] contig 21762 to 23039 2017-11-14 09:45:28,401 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,401 [DEBUG] Moving from ref0502055.15e5 to ref0502055.14e3 (p=1) 2017-11-14 09:45:28,401 [DEBUG] unimproved gap 2017-11-14 09:45:28,401 [DEBUG] Moving from ref0502055.14e3 to ref0502055.14e5 (p=1) 2017-11-14 09:45:28,402 [DEBUG] contig 2017-11-14 09:45:28,402 [DEBUG] who? ref0502055.14e5 ref0502055.14e3 2017-11-14 09:45:28,402 [DEBUG] Grabbing contig between nodes ref0502055.14e5 & ref0502055.14e3 - [trim 0, 0] 2017-11-14 09:45:28,402 [DEBUG] contig 21169 to 21507 2017-11-14 09:45:28,402 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,402 [DEBUG] Moving from ref0502055.14e5 to ref0502055.13e3 (p=1) 2017-11-14 09:45:28,402 [DEBUG] unimproved gap 2017-11-14 09:45:28,402 [DEBUG] Moving from ref0502055.13e3 to ref0502055.13e5 (p=1) 2017-11-14 09:45:28,402 [DEBUG] contig 2017-11-14 09:45:28,402 [DEBUG] who? ref0502055.13e5 ref0502055.13e3 2017-11-14 09:45:28,402 [DEBUG] Grabbing contig between nodes ref0502055.13e5 & ref0502055.13e3 - [trim 0, 0] 2017-11-14 09:45:28,402 [DEBUG] contig 19584 to 20822 2017-11-14 09:45:28,402 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,403 [DEBUG] Moving from ref0502055.13e5 to ref0502055.12e3 (p=1) 2017-11-14 09:45:28,403 [DEBUG] unimproved gap 2017-11-14 09:45:28,403 [DEBUG] Moving from ref0502055.12e3 to ref0502055.12e5 (p=1) 2017-11-14 09:45:28,403 [DEBUG] contig 2017-11-14 09:45:28,403 [DEBUG] who? ref0502055.12e5 ref0502055.12e3 2017-11-14 09:45:28,403 [DEBUG] Grabbing contig between nodes ref0502055.12e5 & ref0502055.12e3 - [trim 0, 0] 2017-11-14 09:45:28,403 [DEBUG] contig 18412 to 19510 2017-11-14 09:45:28,403 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,403 [DEBUG] Moving from ref0502055.12e5 to ref0502055.11e3 (p=1) 2017-11-14 09:45:28,403 [DEBUG] unimproved gap 2017-11-14 09:45:28,403 [DEBUG] Moving from ref0502055.11e3 to ref0502055.11e5 (p=1) 2017-11-14 09:45:28,403 [DEBUG] contig 2017-11-14 09:45:28,403 [DEBUG] who? ref0502055.11e5 ref0502055.11e3 2017-11-14 09:45:28,403 [DEBUG] Grabbing contig between nodes ref0502055.11e5 & ref0502055.11e3 - [trim 0, 0] 2017-11-14 09:45:28,404 [DEBUG] contig 17519 to 18199 2017-11-14 09:45:28,404 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,404 [DEBUG] Moving from ref0502055.11e5 to ref0502055.10e3 (p=1) 2017-11-14 09:45:28,404 [DEBUG] unimproved gap 2017-11-14 09:45:28,404 [DEBUG] Moving from ref0502055.10e3 to ref0502055.10e5 (p=1) 2017-11-14 09:45:28,404 [DEBUG] contig 2017-11-14 09:45:28,404 [DEBUG] who? ref0502055.10e5 ref0502055.10e3 2017-11-14 09:45:28,404 [DEBUG] Grabbing contig between nodes ref0502055.10e5 & ref0502055.10e3 - [trim 0, 0] 2017-11-14 09:45:28,404 [DEBUG] contig 16645 to 17303 2017-11-14 09:45:28,404 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,404 [DEBUG] Moving from ref0502055.10e5 to ref0502055.9e3 (p=1) 2017-11-14 09:45:28,404 [DEBUG] unimproved gap 2017-11-14 09:45:28,404 [DEBUG] Moving from ref0502055.9e3 to ref0502055.9e5 (p=1) 2017-11-14 09:45:28,405 [DEBUG] contig 2017-11-14 09:45:28,405 [DEBUG] who? ref0502055.9e5 ref0502055.9e3 2017-11-14 09:45:28,405 [DEBUG] Grabbing contig between nodes ref0502055.9e5 & ref0502055.9e3 - [trim 0, 0] 2017-11-14 09:45:28,405 [DEBUG] contig 16564 to 16596 2017-11-14 09:45:28,405 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,405 [DEBUG] Moving from ref0502055.9e5 to ref0502055.8e3 (p=1) 2017-11-14 09:45:28,405 [DEBUG] unimproved gap 2017-11-14 09:45:28,405 [DEBUG] Moving from ref0502055.8e3 to ref0502055.8e5 (p=1) 2017-11-14 09:45:28,405 [DEBUG] contig 2017-11-14 09:45:28,405 [DEBUG] who? ref0502055.8e5 ref0502055.8e3 2017-11-14 09:45:28,405 [DEBUG] Grabbing contig between nodes ref0502055.8e5 & ref0502055.8e3 - [trim 0, 0] 2017-11-14 09:45:28,405 [DEBUG] contig 14739 to 16478 2017-11-14 09:45:28,405 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,406 [DEBUG] Moving from ref0502055.8e5 to ref0502055.7e3 (p=1) 2017-11-14 09:45:28,406 [DEBUG] unimproved gap 2017-11-14 09:45:28,406 [DEBUG] Moving from ref0502055.7e3 to ref0502055.7e5 (p=1) 2017-11-14 09:45:28,406 [DEBUG] contig 2017-11-14 09:45:28,406 [DEBUG] who? ref0502055.7e5 ref0502055.7e3 2017-11-14 09:45:28,406 [DEBUG] Grabbing contig between nodes ref0502055.7e5 & ref0502055.7e3 - [trim 0, 0] 2017-11-14 09:45:28,406 [DEBUG] contig 14568 to 14605 2017-11-14 09:45:28,406 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,406 [DEBUG] Moving from ref0502055.7e5 to ref0502055.6e3 (p=1) 2017-11-14 09:45:28,406 [DEBUG] unimproved gap 2017-11-14 09:45:28,406 [DEBUG] Moving from ref0502055.6e3 to ref0502055.6e5 (p=1) 2017-11-14 09:45:28,406 [DEBUG] contig 2017-11-14 09:45:28,406 [DEBUG] who? ref0502055.6e5 ref0502055.6e3 2017-11-14 09:45:28,406 [DEBUG] Grabbing contig between nodes ref0502055.6e5 & ref0502055.6e3 - [trim 0, 0] 2017-11-14 09:45:28,407 [DEBUG] contig 13503 to 14417 2017-11-14 09:45:28,407 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,407 [DEBUG] Moving from ref0502055.6e5 to ref0502055.5e3 (p=1) 2017-11-14 09:45:28,407 [DEBUG] unimproved gap 2017-11-14 09:45:28,407 [DEBUG] Moving from ref0502055.5e3 to ref0502055.5e5 (p=1) 2017-11-14 09:45:28,407 [DEBUG] contig 2017-11-14 09:45:28,407 [DEBUG] who? ref0502055.5e5 ref0502055.5e3 2017-11-14 09:45:28,407 [DEBUG] Grabbing contig between nodes ref0502055.5e5 & ref0502055.5e3 - [trim 0, 0] 2017-11-14 09:45:28,407 [DEBUG] contig 13364 to 13402 2017-11-14 09:45:28,407 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,407 [DEBUG] Moving from ref0502055.5e5 to ref0502055.4e3 (p=1) 2017-11-14 09:45:28,407 [DEBUG] unimproved gap 2017-11-14 09:45:28,407 [DEBUG] Moving from ref0502055.4e3 to ref0502055.4e5 (p=1) 2017-11-14 09:45:28,408 [DEBUG] contig 2017-11-14 09:45:28,408 [DEBUG] who? ref0502055.4e5 ref0502055.4e3 2017-11-14 09:45:28,408 [DEBUG] Grabbing contig between nodes ref0502055.4e5 & ref0502055.4e3 - [trim 0, 0] 2017-11-14 09:45:28,408 [DEBUG] contig 3868 to 12733 2017-11-14 09:45:28,408 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,408 [DEBUG] Moving from ref0502055.4e5 to ref0502055.3e3 (p=1) 2017-11-14 09:45:28,408 [DEBUG] unimproved gap 2017-11-14 09:45:28,408 [DEBUG] Moving from ref0502055.3e3 to ref0502055.3e5 (p=1) 2017-11-14 09:45:28,408 [DEBUG] contig 2017-11-14 09:45:28,408 [DEBUG] who? ref0502055.3e5 ref0502055.3e3 2017-11-14 09:45:28,408 [DEBUG] Grabbing contig between nodes ref0502055.3e5 & ref0502055.3e3 - [trim 0, 0] 2017-11-14 09:45:28,408 [DEBUG] contig 1643 to 3798 2017-11-14 09:45:28,409 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,409 [DEBUG] Moving from ref0502055.3e5 to ref0502055.2e3 (p=1) 2017-11-14 09:45:28,409 [DEBUG] unimproved gap 2017-11-14 09:45:28,409 [DEBUG] Moving from ref0502055.2e3 to ref0502055.2e5 (p=1) 2017-11-14 09:45:28,409 [DEBUG] contig 2017-11-14 09:45:28,409 [DEBUG] who? ref0502055.2e5 ref0502055.2e3 2017-11-14 09:45:28,409 [DEBUG] Grabbing contig between nodes ref0502055.2e5 & ref0502055.2e3 - [trim 0, 0] 2017-11-14 09:45:28,409 [DEBUG] contig 1410 to 1441 2017-11-14 09:45:28,409 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,409 [DEBUG] Moving from ref0502055.2e5 to ref0502055.1e3 (p=1) 2017-11-14 09:45:28,409 [DEBUG] unimproved gap 2017-11-14 09:45:28,409 [DEBUG] Moving from ref0502055.1e3 to ref0502055.1e5 (p=1) 2017-11-14 09:45:28,409 [DEBUG] contig 2017-11-14 09:45:28,410 [DEBUG] who? ref0502055.1e5 ref0502055.1e3 2017-11-14 09:45:28,410 [DEBUG] Grabbing contig between nodes ref0502055.1e5 & ref0502055.1e3 - [trim 0, 0] 2017-11-14 09:45:28,410 [DEBUG] contig 312 to 1286 2017-11-14 09:45:28,410 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,410 [DEBUG] Moving from ref0502055.1e5 to ref0502055.0e3 (p=1) 2017-11-14 09:45:28,410 [DEBUG] unimproved gap 2017-11-14 09:45:28,410 [DEBUG] Moving from ref0502055.0e3 to ref0502055e5 (p=1) 2017-11-14 09:45:28,410 [DEBUG] contig 2017-11-14 09:45:28,410 [DEBUG] who? ref0502055e5 ref0502055.0e3 2017-11-14 09:45:28,410 [DEBUG] Grabbing contig between nodes ref0502055e5 & ref0502055.0e3 - [trim 0, 0] 2017-11-14 09:45:28,410 [DEBUG] contig 0 to 65 2017-11-14 09:45:28,410 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,410 [DEBUG] FirstFlipping 72 2017-11-14 09:45:28,411 [DEBUG] Contig 73 2017-11-14 09:45:28,413 [DEBUG] Moving from ref0382204e3 to ref0382204.17e5 (p=1) 2017-11-14 09:45:28,413 [DEBUG] contig 2017-11-14 09:45:28,413 [DEBUG] who? ref0382204.17e5 ref0382204e3 2017-11-14 09:45:28,413 [DEBUG] Grabbing contig between nodes ref0382204.17e5 & ref0382204e3 - [trim 0, 0] 2017-11-14 09:45:28,413 [DEBUG] contig 23534 to 23574 2017-11-14 09:45:28,413 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,413 [DEBUG] Moving from ref0382204.17e5 to ref0382204.16e3 (p=1) 2017-11-14 09:45:28,413 [DEBUG] unimproved gap 2017-11-14 09:45:28,413 [DEBUG] Moving from ref0382204.16e3 to ref0382204.16e5 (p=1) 2017-11-14 09:45:28,414 [DEBUG] contig 2017-11-14 09:45:28,414 [DEBUG] who? ref0382204.16e5 ref0382204.16e3 2017-11-14 09:45:28,414 [DEBUG] Grabbing contig between nodes ref0382204.16e5 & ref0382204.16e3 - [trim 0, 0] 2017-11-14 09:45:28,414 [DEBUG] contig 20925 to 23012 2017-11-14 09:45:28,414 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,414 [DEBUG] Moving from ref0382204.16e5 to ref0382204.15e3 (p=1) 2017-11-14 09:45:28,414 [DEBUG] unimproved gap 2017-11-14 09:45:28,414 [DEBUG] Moving from ref0382204.15e3 to ref0382204.15e5 (p=1) 2017-11-14 09:45:28,414 [DEBUG] contig 2017-11-14 09:45:28,414 [DEBUG] who? ref0382204.15e5 ref0382204.15e3 2017-11-14 09:45:28,414 [DEBUG] Grabbing contig between nodes ref0382204.15e5 & ref0382204.15e3 - [trim 0, 0] 2017-11-14 09:45:28,414 [DEBUG] contig 19321 to 20882 2017-11-14 09:45:28,414 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,415 [DEBUG] Moving from ref0382204.15e5 to ref0382204.14e3 (p=1) 2017-11-14 09:45:28,415 [DEBUG] unimproved gap 2017-11-14 09:45:28,415 [DEBUG] Moving from ref0382204.14e3 to ref0382204.14e5 (p=1) 2017-11-14 09:45:28,415 [DEBUG] contig 2017-11-14 09:45:28,415 [DEBUG] who? ref0382204.14e5 ref0382204.14e3 2017-11-14 09:45:28,415 [DEBUG] Grabbing contig between nodes ref0382204.14e5 & ref0382204.14e3 - [trim 0, 0] 2017-11-14 09:45:28,415 [DEBUG] contig 19168 to 19204 2017-11-14 09:45:28,415 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,415 [DEBUG] Moving from ref0382204.14e5 to ref0382204.13e3 (p=1) 2017-11-14 09:45:28,415 [DEBUG] unimproved gap 2017-11-14 09:45:28,415 [DEBUG] Moving from ref0382204.13e3 to ref0382204.13e5 (p=1) 2017-11-14 09:45:28,415 [DEBUG] contig 2017-11-14 09:45:28,415 [DEBUG] who? ref0382204.13e5 ref0382204.13e3 2017-11-14 09:45:28,416 [DEBUG] Grabbing contig between nodes ref0382204.13e5 & ref0382204.13e3 - [trim 0, 0] 2017-11-14 09:45:28,416 [DEBUG] contig 17773 to 19141 2017-11-14 09:45:28,416 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,416 [DEBUG] Moving from ref0382204.13e5 to ref0382204.12e3 (p=1) 2017-11-14 09:45:28,416 [DEBUG] unimproved gap 2017-11-14 09:45:28,416 [DEBUG] Moving from ref0382204.12e3 to ref0382204.12e5 (p=1) 2017-11-14 09:45:28,416 [DEBUG] contig 2017-11-14 09:45:28,416 [DEBUG] who? ref0382204.12e5 ref0382204.12e3 2017-11-14 09:45:28,416 [DEBUG] Grabbing contig between nodes ref0382204.12e5 & ref0382204.12e3 - [trim 0, 0] 2017-11-14 09:45:28,416 [DEBUG] contig 17362 to 17484 2017-11-14 09:45:28,416 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,416 [DEBUG] Moving from ref0382204.12e5 to ref0382204.11e3 (p=1) 2017-11-14 09:45:28,416 [DEBUG] unimproved gap 2017-11-14 09:45:28,417 [DEBUG] Moving from ref0382204.11e3 to ref0382204.11e5 (p=1) 2017-11-14 09:45:28,417 [DEBUG] contig 2017-11-14 09:45:28,417 [DEBUG] who? ref0382204.11e5 ref0382204.11e3 2017-11-14 09:45:28,417 [DEBUG] Grabbing contig between nodes ref0382204.11e5 & ref0382204.11e3 - [trim 0, 0] 2017-11-14 09:45:28,417 [DEBUG] contig 14162 to 16843 2017-11-14 09:45:28,417 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,417 [DEBUG] Moving from ref0382204.11e5 to ref0382204.10e3 (p=1) 2017-11-14 09:45:28,417 [DEBUG] unimproved gap 2017-11-14 09:45:28,417 [DEBUG] Moving from ref0382204.10e3 to ref0382204.10e5 (p=1) 2017-11-14 09:45:28,417 [DEBUG] contig 2017-11-14 09:45:28,417 [DEBUG] who? ref0382204.10e5 ref0382204.10e3 2017-11-14 09:45:28,417 [DEBUG] Grabbing contig between nodes ref0382204.10e5 & ref0382204.10e3 - [trim 0, 0] 2017-11-14 09:45:28,417 [DEBUG] contig 13770 to 14125 2017-11-14 09:45:28,418 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,418 [DEBUG] Moving from ref0382204.10e5 to ref0382204.9e3 (p=1) 2017-11-14 09:45:28,418 [DEBUG] unimproved gap 2017-11-14 09:45:28,418 [DEBUG] Moving from ref0382204.9e3 to ref0382204.9e5 (p=1) 2017-11-14 09:45:28,418 [DEBUG] contig 2017-11-14 09:45:28,418 [DEBUG] who? ref0382204.9e5 ref0382204.9e3 2017-11-14 09:45:28,418 [DEBUG] Grabbing contig between nodes ref0382204.9e5 & ref0382204.9e3 - [trim 0, 0] 2017-11-14 09:45:28,418 [DEBUG] contig 13174 to 13672 2017-11-14 09:45:28,418 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,418 [DEBUG] Moving from ref0382204.9e5 to ref0382204.8e3 (p=1) 2017-11-14 09:45:28,418 [DEBUG] unimproved gap 2017-11-14 09:45:28,418 [DEBUG] Moving from ref0382204.8e3 to ref0382204.8e5 (p=1) 2017-11-14 09:45:28,418 [DEBUG] contig 2017-11-14 09:45:28,419 [DEBUG] who? ref0382204.8e5 ref0382204.8e3 2017-11-14 09:45:28,419 [DEBUG] Grabbing contig between nodes ref0382204.8e5 & ref0382204.8e3 - [trim 0, 0] 2017-11-14 09:45:28,419 [DEBUG] contig 10781 to 12993 2017-11-14 09:45:28,419 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,419 [DEBUG] Moving from ref0382204.8e5 to ref0382204.7e3 (p=1) 2017-11-14 09:45:28,419 [DEBUG] unimproved gap 2017-11-14 09:45:28,419 [DEBUG] Moving from ref0382204.7e3 to ref0382204.7e5 (p=1) 2017-11-14 09:45:28,419 [DEBUG] contig 2017-11-14 09:45:28,419 [DEBUG] who? ref0382204.7e5 ref0382204.7e3 2017-11-14 09:45:28,419 [DEBUG] Grabbing contig between nodes ref0382204.7e5 & ref0382204.7e3 - [trim 0, 0] 2017-11-14 09:45:28,419 [DEBUG] contig 9320 to 10513 2017-11-14 09:45:28,419 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,419 [DEBUG] Moving from ref0382204.7e5 to ref0382204.6e3 (p=1) 2017-11-14 09:45:28,420 [DEBUG] unimproved gap 2017-11-14 09:45:28,420 [DEBUG] Moving from ref0382204.6e3 to ref0382204.6e5 (p=1) 2017-11-14 09:45:28,420 [DEBUG] contig 2017-11-14 09:45:28,420 [DEBUG] who? ref0382204.6e5 ref0382204.6e3 2017-11-14 09:45:28,420 [DEBUG] Grabbing contig between nodes ref0382204.6e5 & ref0382204.6e3 - [trim 0, 0] 2017-11-14 09:45:28,420 [DEBUG] contig 8396 to 8860 2017-11-14 09:45:28,420 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,420 [DEBUG] Moving from ref0382204.6e5 to ref0382204.5e3 (p=1) 2017-11-14 09:45:28,420 [DEBUG] unimproved gap 2017-11-14 09:45:28,420 [DEBUG] Moving from ref0382204.5e3 to ref0382204.5e5 (p=1) 2017-11-14 09:45:28,420 [DEBUG] contig 2017-11-14 09:45:28,420 [DEBUG] who? ref0382204.5e5 ref0382204.5e3 2017-11-14 09:45:28,421 [DEBUG] Grabbing contig between nodes ref0382204.5e5 & ref0382204.5e3 - [trim 0, 0] 2017-11-14 09:45:28,421 [DEBUG] contig 4386 to 8213 2017-11-14 09:45:28,421 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,421 [DEBUG] Moving from ref0382204.5e5 to ref0382204.4e3 (p=1) 2017-11-14 09:45:28,421 [DEBUG] unimproved gap 2017-11-14 09:45:28,421 [DEBUG] Moving from ref0382204.4e3 to ref0382204.4e5 (p=1) 2017-11-14 09:45:28,421 [DEBUG] contig 2017-11-14 09:45:28,421 [DEBUG] who? ref0382204.4e5 ref0382204.4e3 2017-11-14 09:45:28,421 [DEBUG] Grabbing contig between nodes ref0382204.4e5 & ref0382204.4e3 - [trim 0, 0] 2017-11-14 09:45:28,421 [DEBUG] contig 3461 to 4261 2017-11-14 09:45:28,421 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,421 [DEBUG] Moving from ref0382204.4e5 to ref0382204.3e3 (p=1) 2017-11-14 09:45:28,421 [DEBUG] unimproved gap 2017-11-14 09:45:28,422 [DEBUG] Moving from ref0382204.3e3 to ref0382204.3e5 (p=1) 2017-11-14 09:45:28,422 [DEBUG] contig 2017-11-14 09:45:28,422 [DEBUG] who? ref0382204.3e5 ref0382204.3e3 2017-11-14 09:45:28,422 [DEBUG] Grabbing contig between nodes ref0382204.3e5 & ref0382204.3e3 - [trim 0, 0] 2017-11-14 09:45:28,422 [DEBUG] contig 2273 to 2929 2017-11-14 09:45:28,422 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,422 [DEBUG] Moving from ref0382204.3e5 to ref0382204.2e3 (p=1) 2017-11-14 09:45:28,422 [DEBUG] unimproved gap 2017-11-14 09:45:28,422 [DEBUG] Moving from ref0382204.2e3 to ref0382204.2e5 (p=1) 2017-11-14 09:45:28,422 [DEBUG] contig 2017-11-14 09:45:28,422 [DEBUG] who? ref0382204.2e5 ref0382204.2e3 2017-11-14 09:45:28,422 [DEBUG] Grabbing contig between nodes ref0382204.2e5 & ref0382204.2e3 - [trim 0, 0] 2017-11-14 09:45:28,422 [DEBUG] contig 1197 to 2130 2017-11-14 09:45:28,423 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,423 [DEBUG] Moving from ref0382204.2e5 to ref0382204.1e3 (p=1) 2017-11-14 09:45:28,423 [DEBUG] unimproved gap 2017-11-14 09:45:28,423 [DEBUG] Moving from ref0382204.1e3 to ref0382204.1e5 (p=1) 2017-11-14 09:45:28,423 [DEBUG] contig 2017-11-14 09:45:28,423 [DEBUG] who? ref0382204.1e5 ref0382204.1e3 2017-11-14 09:45:28,423 [DEBUG] Grabbing contig between nodes ref0382204.1e5 & ref0382204.1e3 - [trim 0, 0] 2017-11-14 09:45:28,423 [DEBUG] contig 993 to 1025 2017-11-14 09:45:28,423 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,423 [DEBUG] Moving from ref0382204.1e5 to ref0382204.0e3 (p=1) 2017-11-14 09:45:28,423 [DEBUG] unimproved gap 2017-11-14 09:45:28,423 [DEBUG] Moving from ref0382204.0e3 to ref0382204e5 (p=1) 2017-11-14 09:45:28,423 [DEBUG] contig 2017-11-14 09:45:28,424 [DEBUG] who? ref0382204e5 ref0382204.0e3 2017-11-14 09:45:28,424 [DEBUG] Grabbing contig between nodes ref0382204e5 & ref0382204.0e3 - [trim 0, 0] 2017-11-14 09:45:28,424 [DEBUG] contig 0 to 875 2017-11-14 09:45:28,424 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,424 [DEBUG] FirstFlipping 73 2017-11-14 09:45:28,424 [DEBUG] Contig 74 2017-11-14 09:45:28,426 [DEBUG] Moving from ref0700584e3 to ref0700584.17e5 (p=1) 2017-11-14 09:45:28,426 [DEBUG] contig 2017-11-14 09:45:28,426 [DEBUG] who? ref0700584.17e5 ref0700584e3 2017-11-14 09:45:28,426 [DEBUG] Grabbing contig between nodes ref0700584.17e5 & ref0700584e3 - [trim 0, 0] 2017-11-14 09:45:28,427 [DEBUG] contig 12705 to 13306 2017-11-14 09:45:28,427 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,427 [DEBUG] Moving from ref0700584.17e5 to ref0700584.16e3 (p=1) 2017-11-14 09:45:28,427 [DEBUG] unimproved gap 2017-11-14 09:45:28,427 [DEBUG] Moving from ref0700584.16e3 to ref0700584.16e5 (p=1) 2017-11-14 09:45:28,427 [DEBUG] contig 2017-11-14 09:45:28,427 [DEBUG] who? ref0700584.16e5 ref0700584.16e3 2017-11-14 09:45:28,427 [DEBUG] Grabbing contig between nodes ref0700584.16e5 & ref0700584.16e3 - [trim 0, 0] 2017-11-14 09:45:28,427 [DEBUG] contig 11544 to 12361 2017-11-14 09:45:28,427 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,427 [DEBUG] Moving from ref0700584.16e5 to ref0700584.15e3 (p=1) 2017-11-14 09:45:28,427 [DEBUG] unimproved gap 2017-11-14 09:45:28,427 [DEBUG] Moving from ref0700584.15e3 to ref0700584.15e5 (p=1) 2017-11-14 09:45:28,428 [DEBUG] contig 2017-11-14 09:45:28,428 [DEBUG] who? ref0700584.15e5 ref0700584.15e3 2017-11-14 09:45:28,428 [DEBUG] Grabbing contig between nodes ref0700584.15e5 & ref0700584.15e3 - [trim 0, 0] 2017-11-14 09:45:28,428 [DEBUG] contig 10606 to 11135 2017-11-14 09:45:28,428 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,428 [DEBUG] Moving from ref0700584.15e5 to ref0700584.14e3 (p=1) 2017-11-14 09:45:28,428 [DEBUG] unimproved gap 2017-11-14 09:45:28,428 [DEBUG] Moving from ref0700584.14e3 to ref0700584.14e5 (p=1) 2017-11-14 09:45:28,428 [DEBUG] contig 2017-11-14 09:45:28,428 [DEBUG] who? ref0700584.14e5 ref0700584.14e3 2017-11-14 09:45:28,428 [DEBUG] Grabbing contig between nodes ref0700584.14e5 & ref0700584.14e3 - [trim 0, 0] 2017-11-14 09:45:28,428 [DEBUG] contig 9720 to 10309 2017-11-14 09:45:28,429 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,429 [DEBUG] Moving from ref0700584.14e5 to ref0700584.13e3 (p=1) 2017-11-14 09:45:28,429 [DEBUG] unimproved gap 2017-11-14 09:45:28,429 [DEBUG] Moving from ref0700584.13e3 to ref0700584.13e5 (p=1) 2017-11-14 09:45:28,429 [DEBUG] contig 2017-11-14 09:45:28,429 [DEBUG] who? ref0700584.13e5 ref0700584.13e3 2017-11-14 09:45:28,429 [DEBUG] Grabbing contig between nodes ref0700584.13e5 & ref0700584.13e3 - [trim 0, 0] 2017-11-14 09:45:28,429 [DEBUG] contig 9447 to 9635 2017-11-14 09:45:28,429 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,429 [DEBUG] Moving from ref0700584.13e5 to ref0700584.12e3 (p=1) 2017-11-14 09:45:28,429 [DEBUG] unimproved gap 2017-11-14 09:45:28,429 [DEBUG] Moving from ref0700584.12e3 to ref0700584.12e5 (p=1) 2017-11-14 09:45:28,429 [DEBUG] contig 2017-11-14 09:45:28,430 [DEBUG] who? ref0700584.12e5 ref0700584.12e3 2017-11-14 09:45:28,430 [DEBUG] Grabbing contig between nodes ref0700584.12e5 & ref0700584.12e3 - [trim 0, 0] 2017-11-14 09:45:28,430 [DEBUG] contig 8900 to 9088 2017-11-14 09:45:28,430 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,430 [DEBUG] Moving from ref0700584.12e5 to ref0700584.11e3 (p=1) 2017-11-14 09:45:28,430 [DEBUG] unimproved gap 2017-11-14 09:45:28,430 [DEBUG] Moving from ref0700584.11e3 to ref0700584.11e5 (p=1) 2017-11-14 09:45:28,430 [DEBUG] contig 2017-11-14 09:45:28,430 [DEBUG] who? ref0700584.11e5 ref0700584.11e3 2017-11-14 09:45:28,430 [DEBUG] Grabbing contig between nodes ref0700584.11e5 & ref0700584.11e3 - [trim 0, 0] 2017-11-14 09:45:28,430 [DEBUG] contig 8522 to 8838 2017-11-14 09:45:28,430 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,430 [DEBUG] Moving from ref0700584.11e5 to ref0700584.10e3 (p=1) 2017-11-14 09:45:28,431 [DEBUG] unimproved gap 2017-11-14 09:45:28,431 [DEBUG] Moving from ref0700584.10e3 to ref0700584.10e5 (p=1) 2017-11-14 09:45:28,431 [DEBUG] contig 2017-11-14 09:45:28,431 [DEBUG] who? ref0700584.10e5 ref0700584.10e3 2017-11-14 09:45:28,431 [DEBUG] Grabbing contig between nodes ref0700584.10e5 & ref0700584.10e3 - [trim 0, 0] 2017-11-14 09:45:28,431 [DEBUG] contig 8360 to 8394 2017-11-14 09:45:28,431 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,431 [DEBUG] Moving from ref0700584.10e5 to ref0700584.9e3 (p=1) 2017-11-14 09:45:28,431 [DEBUG] unimproved gap 2017-11-14 09:45:28,431 [DEBUG] Moving from ref0700584.9e3 to ref0700584.9e5 (p=1) 2017-11-14 09:45:28,431 [DEBUG] contig 2017-11-14 09:45:28,431 [DEBUG] who? ref0700584.9e5 ref0700584.9e3 2017-11-14 09:45:28,431 [DEBUG] Grabbing contig between nodes ref0700584.9e5 & ref0700584.9e3 - [trim 0, 0] 2017-11-14 09:45:28,432 [DEBUG] contig 8128 to 8286 2017-11-14 09:45:28,432 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,432 [DEBUG] Moving from ref0700584.9e5 to ref0700584.8e3 (p=1) 2017-11-14 09:45:28,432 [DEBUG] unimproved gap 2017-11-14 09:45:28,432 [DEBUG] Moving from ref0700584.8e3 to ref0700584.8e5 (p=1) 2017-11-14 09:45:28,432 [DEBUG] contig 2017-11-14 09:45:28,432 [DEBUG] who? ref0700584.8e5 ref0700584.8e3 2017-11-14 09:45:28,432 [DEBUG] Grabbing contig between nodes ref0700584.8e5 & ref0700584.8e3 - [trim 0, 0] 2017-11-14 09:45:28,432 [DEBUG] contig 7943 to 8002 2017-11-14 09:45:28,432 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,432 [DEBUG] Moving from ref0700584.8e5 to ref0700584.7e3 (p=1) 2017-11-14 09:45:28,432 [DEBUG] unimproved gap 2017-11-14 09:45:28,432 [DEBUG] Moving from ref0700584.7e3 to ref0700584.7e5 (p=1) 2017-11-14 09:45:28,433 [DEBUG] contig 2017-11-14 09:45:28,433 [DEBUG] who? ref0700584.7e5 ref0700584.7e3 2017-11-14 09:45:28,433 [DEBUG] Grabbing contig between nodes ref0700584.7e5 & ref0700584.7e3 - [trim 0, 0] 2017-11-14 09:45:28,433 [DEBUG] contig 7571 to 7637 2017-11-14 09:45:28,433 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,433 [DEBUG] Moving from ref0700584.7e5 to ref0700584.6e3 (p=1) 2017-11-14 09:45:28,433 [DEBUG] unimproved gap 2017-11-14 09:45:28,433 [DEBUG] Moving from ref0700584.6e3 to ref0700584.6e5 (p=1) 2017-11-14 09:45:28,433 [DEBUG] contig 2017-11-14 09:45:28,433 [DEBUG] who? ref0700584.6e5 ref0700584.6e3 2017-11-14 09:45:28,433 [DEBUG] Grabbing contig between nodes ref0700584.6e5 & ref0700584.6e3 - [trim 0, 0] 2017-11-14 09:45:28,433 [DEBUG] contig 6186 to 7504 2017-11-14 09:45:28,433 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,434 [DEBUG] Moving from ref0700584.6e5 to ref0700584.5e3 (p=1) 2017-11-14 09:45:28,434 [DEBUG] unimproved gap 2017-11-14 09:45:28,434 [DEBUG] Moving from ref0700584.5e3 to ref0700584.5e5 (p=1) 2017-11-14 09:45:28,434 [DEBUG] contig 2017-11-14 09:45:28,434 [DEBUG] who? ref0700584.5e5 ref0700584.5e3 2017-11-14 09:45:28,434 [DEBUG] Grabbing contig between nodes ref0700584.5e5 & ref0700584.5e3 - [trim 0, 0] 2017-11-14 09:45:28,434 [DEBUG] contig 3430 to 6143 2017-11-14 09:45:28,434 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,434 [DEBUG] Moving from ref0700584.5e5 to ref0700584.4e3 (p=1) 2017-11-14 09:45:28,434 [DEBUG] unimproved gap 2017-11-14 09:45:28,434 [DEBUG] Moving from ref0700584.4e3 to ref0700584.4e5 (p=1) 2017-11-14 09:45:28,434 [DEBUG] contig 2017-11-14 09:45:28,434 [DEBUG] who? ref0700584.4e5 ref0700584.4e3 2017-11-14 09:45:28,435 [DEBUG] Grabbing contig between nodes ref0700584.4e5 & ref0700584.4e3 - [trim 0, 0] 2017-11-14 09:45:28,435 [DEBUG] contig 3179 to 3220 2017-11-14 09:45:28,435 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,435 [DEBUG] Moving from ref0700584.4e5 to ref0700584.3e3 (p=1) 2017-11-14 09:45:28,435 [DEBUG] unimproved gap 2017-11-14 09:45:28,435 [DEBUG] Moving from ref0700584.3e3 to ref0700584.3e5 (p=1) 2017-11-14 09:45:28,435 [DEBUG] contig 2017-11-14 09:45:28,435 [DEBUG] who? ref0700584.3e5 ref0700584.3e3 2017-11-14 09:45:28,435 [DEBUG] Grabbing contig between nodes ref0700584.3e5 & ref0700584.3e3 - [trim 0, 0] 2017-11-14 09:45:28,435 [DEBUG] contig 2846 to 2885 2017-11-14 09:45:28,435 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,435 [DEBUG] Moving from ref0700584.3e5 to ref0700584.2e3 (p=1) 2017-11-14 09:45:28,436 [DEBUG] unimproved gap 2017-11-14 09:45:28,436 [DEBUG] Moving from ref0700584.2e3 to ref0700584.2e5 (p=1) 2017-11-14 09:45:28,436 [DEBUG] contig 2017-11-14 09:45:28,436 [DEBUG] who? ref0700584.2e5 ref0700584.2e3 2017-11-14 09:45:28,436 [DEBUG] Grabbing contig between nodes ref0700584.2e5 & ref0700584.2e3 - [trim 0, 0] 2017-11-14 09:45:28,436 [DEBUG] contig 1631 to 2260 2017-11-14 09:45:28,436 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,436 [DEBUG] Moving from ref0700584.2e5 to ref0700584.1e3 (p=1) 2017-11-14 09:45:28,436 [DEBUG] unimproved gap 2017-11-14 09:45:28,436 [DEBUG] Moving from ref0700584.1e3 to ref0700584.1e5 (p=1) 2017-11-14 09:45:28,436 [DEBUG] contig 2017-11-14 09:45:28,436 [DEBUG] who? ref0700584.1e5 ref0700584.1e3 2017-11-14 09:45:28,437 [DEBUG] Grabbing contig between nodes ref0700584.1e5 & ref0700584.1e3 - [trim 0, 0] 2017-11-14 09:45:28,437 [DEBUG] contig 435 to 1069 2017-11-14 09:45:28,437 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,437 [DEBUG] Moving from ref0700584.1e5 to ref0700584.0e3 (p=1) 2017-11-14 09:45:28,437 [DEBUG] unimproved gap 2017-11-14 09:45:28,437 [DEBUG] Moving from ref0700584.0e3 to ref0700584e5 (p=1) 2017-11-14 09:45:28,437 [DEBUG] contig 2017-11-14 09:45:28,437 [DEBUG] who? ref0700584e5 ref0700584.0e3 2017-11-14 09:45:28,437 [DEBUG] Grabbing contig between nodes ref0700584e5 & ref0700584.0e3 - [trim 0, 0] 2017-11-14 09:45:28,437 [DEBUG] contig 0 to 217 2017-11-14 09:45:28,437 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,437 [DEBUG] FirstFlipping 74 2017-11-14 09:45:28,438 [DEBUG] Contig 75 2017-11-14 09:45:28,440 [DEBUG] Moving from ref0151004e5 to ref0151004.0e3 (p=1) 2017-11-14 09:45:28,440 [DEBUG] contig 2017-11-14 09:45:28,440 [DEBUG] who? ref0151004e5 ref0151004.0e3 2017-11-14 09:45:28,440 [DEBUG] Grabbing contig between nodes ref0151004e5 & ref0151004.0e3 - [trim 0, 0] 2017-11-14 09:45:28,440 [DEBUG] contig 0 to 67 2017-11-14 09:45:28,440 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,440 [DEBUG] Moving from ref0151004.0e3 to ref0151004.1e5 (p=1) 2017-11-14 09:45:28,440 [DEBUG] unimproved gap 2017-11-14 09:45:28,440 [DEBUG] Moving from ref0151004.1e5 to ref0151004.1e3 (p=1) 2017-11-14 09:45:28,440 [DEBUG] contig 2017-11-14 09:45:28,440 [DEBUG] who? ref0151004.1e5 ref0151004.1e3 2017-11-14 09:45:28,441 [DEBUG] Grabbing contig between nodes ref0151004.1e5 & ref0151004.1e3 - [trim 0, 0] 2017-11-14 09:45:28,441 [DEBUG] contig 683 to 1861 2017-11-14 09:45:28,441 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,441 [DEBUG] Moving from ref0151004.1e3 to ref0151004.2e5 (p=1) 2017-11-14 09:45:28,441 [DEBUG] unimproved gap 2017-11-14 09:45:28,441 [DEBUG] Moving from ref0151004.2e5 to ref0151004.2e3 (p=1) 2017-11-14 09:45:28,441 [DEBUG] contig 2017-11-14 09:45:28,441 [DEBUG] who? ref0151004.2e5 ref0151004.2e3 2017-11-14 09:45:28,441 [DEBUG] Grabbing contig between nodes ref0151004.2e5 & ref0151004.2e3 - [trim 0, 0] 2017-11-14 09:45:28,441 [DEBUG] contig 1960 to 5536 2017-11-14 09:45:28,441 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,441 [DEBUG] Moving from ref0151004.2e3 to ref0151004.3e5 (p=1) 2017-11-14 09:45:28,442 [DEBUG] unimproved gap 2017-11-14 09:45:28,442 [DEBUG] Moving from ref0151004.3e5 to ref0151004.3e3 (p=1) 2017-11-14 09:45:28,442 [DEBUG] contig 2017-11-14 09:45:28,442 [DEBUG] who? ref0151004.3e5 ref0151004.3e3 2017-11-14 09:45:28,442 [DEBUG] Grabbing contig between nodes ref0151004.3e5 & ref0151004.3e3 - [trim 0, 0] 2017-11-14 09:45:28,442 [DEBUG] contig 5698 to 5730 2017-11-14 09:45:28,442 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,442 [DEBUG] Moving from ref0151004.3e3 to ref0151004.4e5 (p=1) 2017-11-14 09:45:28,442 [DEBUG] unimproved gap 2017-11-14 09:45:28,442 [DEBUG] Moving from ref0151004.4e5 to ref0151004.4e3 (p=1) 2017-11-14 09:45:28,442 [DEBUG] contig 2017-11-14 09:45:28,442 [DEBUG] who? ref0151004.4e5 ref0151004.4e3 2017-11-14 09:45:28,442 [DEBUG] Grabbing contig between nodes ref0151004.4e5 & ref0151004.4e3 - [trim 0, 0] 2017-11-14 09:45:28,443 [DEBUG] contig 5854 to 11899 2017-11-14 09:45:28,443 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,443 [DEBUG] Moving from ref0151004.4e3 to ref0151004.5e5 (p=1) 2017-11-14 09:45:28,443 [DEBUG] unimproved gap 2017-11-14 09:45:28,443 [DEBUG] Moving from ref0151004.5e5 to ref0151004.5e3 (p=1) 2017-11-14 09:45:28,443 [DEBUG] contig 2017-11-14 09:45:28,443 [DEBUG] who? ref0151004.5e5 ref0151004.5e3 2017-11-14 09:45:28,443 [DEBUG] Grabbing contig between nodes ref0151004.5e5 & ref0151004.5e3 - [trim 0, 0] 2017-11-14 09:45:28,443 [DEBUG] contig 12157 to 13737 2017-11-14 09:45:28,443 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,443 [DEBUG] Moving from ref0151004.5e3 to ref0151004.6e5 (p=1) 2017-11-14 09:45:28,443 [DEBUG] unimproved gap 2017-11-14 09:45:28,443 [DEBUG] Moving from ref0151004.6e5 to ref0151004.6e3 (p=1) 2017-11-14 09:45:28,444 [DEBUG] contig 2017-11-14 09:45:28,444 [DEBUG] who? ref0151004.6e5 ref0151004.6e3 2017-11-14 09:45:28,444 [DEBUG] Grabbing contig between nodes ref0151004.6e5 & ref0151004.6e3 - [trim 0, 0] 2017-11-14 09:45:28,444 [DEBUG] contig 13895 to 13924 2017-11-14 09:45:28,444 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,444 [DEBUG] Moving from ref0151004.6e3 to ref0151004.7e5 (p=1) 2017-11-14 09:45:28,444 [DEBUG] unimproved gap 2017-11-14 09:45:28,444 [DEBUG] Moving from ref0151004.7e5 to ref0151004.7e3 (p=1) 2017-11-14 09:45:28,444 [DEBUG] contig 2017-11-14 09:45:28,444 [DEBUG] who? ref0151004.7e5 ref0151004.7e3 2017-11-14 09:45:28,444 [DEBUG] Grabbing contig between nodes ref0151004.7e5 & ref0151004.7e3 - [trim 0, 0] 2017-11-14 09:45:28,444 [DEBUG] contig 14292 to 14728 2017-11-14 09:45:28,444 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,445 [DEBUG] Moving from ref0151004.7e3 to ref0151004.8e5 (p=1) 2017-11-14 09:45:28,445 [DEBUG] unimproved gap 2017-11-14 09:45:28,445 [DEBUG] Moving from ref0151004.8e5 to ref0151004.8e3 (p=1) 2017-11-14 09:45:28,445 [DEBUG] contig 2017-11-14 09:45:28,445 [DEBUG] who? ref0151004.8e5 ref0151004.8e3 2017-11-14 09:45:28,445 [DEBUG] Grabbing contig between nodes ref0151004.8e5 & ref0151004.8e3 - [trim 0, 0] 2017-11-14 09:45:28,445 [DEBUG] contig 14774 to 16669 2017-11-14 09:45:28,445 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,445 [DEBUG] Moving from ref0151004.8e3 to ref0151004.9e5 (p=1) 2017-11-14 09:45:28,445 [DEBUG] unimproved gap 2017-11-14 09:45:28,445 [DEBUG] Moving from ref0151004.9e5 to ref0151004.9e3 (p=1) 2017-11-14 09:45:28,445 [DEBUG] contig 2017-11-14 09:45:28,445 [DEBUG] who? ref0151004.9e5 ref0151004.9e3 2017-11-14 09:45:28,446 [DEBUG] Grabbing contig between nodes ref0151004.9e5 & ref0151004.9e3 - [trim 0, 0] 2017-11-14 09:45:28,446 [DEBUG] contig 17221 to 17427 2017-11-14 09:45:28,446 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,446 [DEBUG] Moving from ref0151004.9e3 to ref0151004.10e5 (p=1) 2017-11-14 09:45:28,446 [DEBUG] unimproved gap 2017-11-14 09:45:28,446 [DEBUG] Moving from ref0151004.10e5 to ref0151004.10e3 (p=1) 2017-11-14 09:45:28,446 [DEBUG] contig 2017-11-14 09:45:28,446 [DEBUG] who? ref0151004.10e5 ref0151004.10e3 2017-11-14 09:45:28,446 [DEBUG] Grabbing contig between nodes ref0151004.10e5 & ref0151004.10e3 - [trim 0, 0] 2017-11-14 09:45:28,446 [DEBUG] contig 17769 to 18899 2017-11-14 09:45:28,446 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,446 [DEBUG] Moving from ref0151004.10e3 to ref0151004.11e5 (p=1) 2017-11-14 09:45:28,446 [DEBUG] unimproved gap 2017-11-14 09:45:28,447 [DEBUG] Moving from ref0151004.11e5 to ref0151004.11e3 (p=1) 2017-11-14 09:45:28,447 [DEBUG] contig 2017-11-14 09:45:28,447 [DEBUG] who? ref0151004.11e5 ref0151004.11e3 2017-11-14 09:45:28,447 [DEBUG] Grabbing contig between nodes ref0151004.11e5 & ref0151004.11e3 - [trim 0, 0] 2017-11-14 09:45:28,447 [DEBUG] contig 18986 to 19447 2017-11-14 09:45:28,447 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,447 [DEBUG] Moving from ref0151004.11e3 to ref0151004.12e5 (p=1) 2017-11-14 09:45:28,447 [DEBUG] unimproved gap 2017-11-14 09:45:28,447 [DEBUG] Moving from ref0151004.12e5 to ref0151004.12e3 (p=1) 2017-11-14 09:45:28,447 [DEBUG] contig 2017-11-14 09:45:28,447 [DEBUG] who? ref0151004.12e5 ref0151004.12e3 2017-11-14 09:45:28,447 [DEBUG] Grabbing contig between nodes ref0151004.12e5 & ref0151004.12e3 - [trim 0, 0] 2017-11-14 09:45:28,447 [DEBUG] contig 20079 to 23978 2017-11-14 09:45:28,447 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,448 [DEBUG] Moving from ref0151004.12e3 to ref0151004.13e5 (p=1) 2017-11-14 09:45:28,448 [DEBUG] unimproved gap 2017-11-14 09:45:28,448 [DEBUG] Moving from ref0151004.13e5 to ref0151004.13e3 (p=1) 2017-11-14 09:45:28,448 [DEBUG] contig 2017-11-14 09:45:28,448 [DEBUG] who? ref0151004.13e5 ref0151004.13e3 2017-11-14 09:45:28,448 [DEBUG] Grabbing contig between nodes ref0151004.13e5 & ref0151004.13e3 - [trim 0, 0] 2017-11-14 09:45:28,448 [DEBUG] contig 24276 to 26194 2017-11-14 09:45:28,448 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,448 [DEBUG] Moving from ref0151004.13e3 to ref0151004.14e5 (p=1) 2017-11-14 09:45:28,448 [DEBUG] unimproved gap 2017-11-14 09:45:28,448 [DEBUG] Moving from ref0151004.14e5 to ref0151004.14e3 (p=1) 2017-11-14 09:45:28,448 [DEBUG] contig 2017-11-14 09:45:28,448 [DEBUG] who? ref0151004.14e5 ref0151004.14e3 2017-11-14 09:45:28,449 [DEBUG] Grabbing contig between nodes ref0151004.14e5 & ref0151004.14e3 - [trim 0, 0] 2017-11-14 09:45:28,449 [DEBUG] contig 26333 to 30740 2017-11-14 09:45:28,449 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,449 [DEBUG] Moving from ref0151004.14e3 to ref0151004.15e5 (p=1) 2017-11-14 09:45:28,449 [DEBUG] unimproved gap 2017-11-14 09:45:28,449 [DEBUG] Moving from ref0151004.15e5 to ref0151004.15e3 (p=1) 2017-11-14 09:45:28,449 [DEBUG] contig 2017-11-14 09:45:28,449 [DEBUG] who? ref0151004.15e5 ref0151004.15e3 2017-11-14 09:45:28,449 [DEBUG] Grabbing contig between nodes ref0151004.15e5 & ref0151004.15e3 - [trim 0, 0] 2017-11-14 09:45:28,449 [DEBUG] contig 30782 to 30831 2017-11-14 09:45:28,449 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,449 [DEBUG] Moving from ref0151004.15e3 to ref0151004.16e5 (p=1) 2017-11-14 09:45:28,449 [DEBUG] unimproved gap 2017-11-14 09:45:28,450 [DEBUG] Moving from ref0151004.16e5 to ref0151004.16e3 (p=1) 2017-11-14 09:45:28,450 [DEBUG] contig 2017-11-14 09:45:28,450 [DEBUG] who? ref0151004.16e5 ref0151004.16e3 2017-11-14 09:45:28,450 [DEBUG] Grabbing contig between nodes ref0151004.16e5 & ref0151004.16e3 - [trim 0, 0] 2017-11-14 09:45:28,450 [DEBUG] contig 30904 to 30971 2017-11-14 09:45:28,450 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,450 [DEBUG] Moving from ref0151004.16e3 to ref0151004.17e5 (p=1) 2017-11-14 09:45:28,450 [DEBUG] unimproved gap 2017-11-14 09:45:28,450 [DEBUG] Moving from ref0151004.17e5 to ref0151004e3 (p=1) 2017-11-14 09:45:28,450 [DEBUG] contig 2017-11-14 09:45:28,450 [DEBUG] who? ref0151004.17e5 ref0151004e3 2017-11-14 09:45:28,450 [DEBUG] Grabbing contig between nodes ref0151004.17e5 & ref0151004e3 - [trim 0, 0] 2017-11-14 09:45:28,450 [DEBUG] contig 31000 to 31054 2017-11-14 09:45:28,450 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,451 [DEBUG] Contig 76 2017-11-14 09:45:28,453 [DEBUG] Moving from ref0760443e5 to ref0760443.0e3 (p=1) 2017-11-14 09:45:28,453 [DEBUG] contig 2017-11-14 09:45:28,453 [DEBUG] who? ref0760443e5 ref0760443.0e3 2017-11-14 09:45:28,453 [DEBUG] Grabbing contig between nodes ref0760443e5 & ref0760443.0e3 - [trim 0, 0] 2017-11-14 09:45:28,453 [DEBUG] contig 0 to 133 2017-11-14 09:45:28,453 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,453 [DEBUG] Moving from ref0760443.0e3 to ref0760443.1e5 (p=1) 2017-11-14 09:45:28,453 [DEBUG] unimproved gap 2017-11-14 09:45:28,453 [DEBUG] Moving from ref0760443.1e5 to ref0760443.1e3 (p=1) 2017-11-14 09:45:28,453 [DEBUG] contig 2017-11-14 09:45:28,454 [DEBUG] who? ref0760443.1e5 ref0760443.1e3 2017-11-14 09:45:28,454 [DEBUG] Grabbing contig between nodes ref0760443.1e5 & ref0760443.1e3 - [trim 0, 0] 2017-11-14 09:45:28,454 [DEBUG] contig 456 to 833 2017-11-14 09:45:28,454 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,454 [DEBUG] Moving from ref0760443.1e3 to ref0760443.2e5 (p=1) 2017-11-14 09:45:28,454 [DEBUG] unimproved gap 2017-11-14 09:45:28,454 [DEBUG] Moving from ref0760443.2e5 to ref0760443.2e3 (p=1) 2017-11-14 09:45:28,454 [DEBUG] contig 2017-11-14 09:45:28,454 [DEBUG] who? ref0760443.2e5 ref0760443.2e3 2017-11-14 09:45:28,454 [DEBUG] Grabbing contig between nodes ref0760443.2e5 & ref0760443.2e3 - [trim 0, 0] 2017-11-14 09:45:28,454 [DEBUG] contig 901 to 940 2017-11-14 09:45:28,454 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,455 [DEBUG] Moving from ref0760443.2e3 to ref0760443.3e5 (p=1) 2017-11-14 09:45:28,455 [DEBUG] unimproved gap 2017-11-14 09:45:28,455 [DEBUG] Moving from ref0760443.3e5 to ref0760443.3e3 (p=1) 2017-11-14 09:45:28,455 [DEBUG] contig 2017-11-14 09:45:28,455 [DEBUG] who? ref0760443.3e5 ref0760443.3e3 2017-11-14 09:45:28,455 [DEBUG] Grabbing contig between nodes ref0760443.3e5 & ref0760443.3e3 - [trim 0, 0] 2017-11-14 09:45:28,455 [DEBUG] contig 1067 to 1102 2017-11-14 09:45:28,455 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,455 [DEBUG] Moving from ref0760443.3e3 to ref0760443.4e5 (p=1) 2017-11-14 09:45:28,455 [DEBUG] unimproved gap 2017-11-14 09:45:28,455 [DEBUG] Moving from ref0760443.4e5 to ref0760443.4e3 (p=1) 2017-11-14 09:45:28,455 [DEBUG] contig 2017-11-14 09:45:28,456 [DEBUG] who? ref0760443.4e5 ref0760443.4e3 2017-11-14 09:45:28,456 [DEBUG] Grabbing contig between nodes ref0760443.4e5 & ref0760443.4e3 - [trim 0, 0] 2017-11-14 09:45:28,456 [DEBUG] contig 1344 to 1558 2017-11-14 09:45:28,456 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,456 [DEBUG] Moving from ref0760443.4e3 to ref0760443.5e5 (p=1) 2017-11-14 09:45:28,456 [DEBUG] unimproved gap 2017-11-14 09:45:28,456 [DEBUG] Moving from ref0760443.5e5 to ref0760443.5e3 (p=1) 2017-11-14 09:45:28,456 [DEBUG] contig 2017-11-14 09:45:28,456 [DEBUG] who? ref0760443.5e5 ref0760443.5e3 2017-11-14 09:45:28,456 [DEBUG] Grabbing contig between nodes ref0760443.5e5 & ref0760443.5e3 - [trim 0, 0] 2017-11-14 09:45:28,456 [DEBUG] contig 1656 to 1815 2017-11-14 09:45:28,457 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,457 [DEBUG] Moving from ref0760443.5e3 to ref0760443.6e5 (p=1) 2017-11-14 09:45:28,457 [DEBUG] unimproved gap 2017-11-14 09:45:28,457 [DEBUG] Moving from ref0760443.6e5 to ref0760443.6e3 (p=1) 2017-11-14 09:45:28,457 [DEBUG] contig 2017-11-14 09:45:28,457 [DEBUG] who? ref0760443.6e5 ref0760443.6e3 2017-11-14 09:45:28,457 [DEBUG] Grabbing contig between nodes ref0760443.6e5 & ref0760443.6e3 - [trim 0, 0] 2017-11-14 09:45:28,457 [DEBUG] contig 2421 to 2468 2017-11-14 09:45:28,457 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,457 [DEBUG] Moving from ref0760443.6e3 to ref0760443.7e5 (p=1) 2017-11-14 09:45:28,457 [DEBUG] unimproved gap 2017-11-14 09:45:28,457 [DEBUG] Moving from ref0760443.7e5 to ref0760443.7e3 (p=1) 2017-11-14 09:45:28,457 [DEBUG] contig 2017-11-14 09:45:28,458 [DEBUG] who? ref0760443.7e5 ref0760443.7e3 2017-11-14 09:45:28,458 [DEBUG] Grabbing contig between nodes ref0760443.7e5 & ref0760443.7e3 - [trim 0, 0] 2017-11-14 09:45:28,458 [DEBUG] contig 2669 to 2874 2017-11-14 09:45:28,458 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,458 [DEBUG] Moving from ref0760443.7e3 to ref0760443.8e5 (p=1) 2017-11-14 09:45:28,458 [DEBUG] unimproved gap 2017-11-14 09:45:28,458 [DEBUG] Moving from ref0760443.8e5 to ref0760443.8e3 (p=1) 2017-11-14 09:45:28,458 [DEBUG] contig 2017-11-14 09:45:28,458 [DEBUG] who? ref0760443.8e5 ref0760443.8e3 2017-11-14 09:45:28,458 [DEBUG] Grabbing contig between nodes ref0760443.8e5 & ref0760443.8e3 - [trim 0, 0] 2017-11-14 09:45:28,458 [DEBUG] contig 3073 to 3875 2017-11-14 09:45:28,458 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,459 [DEBUG] Moving from ref0760443.8e3 to ref0760443.9e5 (p=1) 2017-11-14 09:45:28,459 [DEBUG] unimproved gap 2017-11-14 09:45:28,459 [DEBUG] Moving from ref0760443.9e5 to ref0760443.9e3 (p=1) 2017-11-14 09:45:28,459 [DEBUG] contig 2017-11-14 09:45:28,459 [DEBUG] who? ref0760443.9e5 ref0760443.9e3 2017-11-14 09:45:28,459 [DEBUG] Grabbing contig between nodes ref0760443.9e5 & ref0760443.9e3 - [trim 0, 0] 2017-11-14 09:45:28,459 [DEBUG] contig 4219 to 4251 2017-11-14 09:45:28,459 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,459 [DEBUG] Moving from ref0760443.9e3 to ref0760443.10e5 (p=1) 2017-11-14 09:45:28,459 [DEBUG] unimproved gap 2017-11-14 09:45:28,459 [DEBUG] Moving from ref0760443.10e5 to ref0760443.10e3 (p=1) 2017-11-14 09:45:28,459 [DEBUG] contig 2017-11-14 09:45:28,459 [DEBUG] who? ref0760443.10e5 ref0760443.10e3 2017-11-14 09:45:28,460 [DEBUG] Grabbing contig between nodes ref0760443.10e5 & ref0760443.10e3 - [trim 0, 0] 2017-11-14 09:45:28,460 [DEBUG] contig 4525 to 4669 2017-11-14 09:45:28,460 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,460 [DEBUG] Moving from ref0760443.10e3 to ref0760443.11e5 (p=1) 2017-11-14 09:45:28,460 [DEBUG] unimproved gap 2017-11-14 09:45:28,460 [DEBUG] Moving from ref0760443.11e5 to ref0760443.11e3 (p=1) 2017-11-14 09:45:28,460 [DEBUG] contig 2017-11-14 09:45:28,460 [DEBUG] who? ref0760443.11e5 ref0760443.11e3 2017-11-14 09:45:28,460 [DEBUG] Grabbing contig between nodes ref0760443.11e5 & ref0760443.11e3 - [trim 0, 0] 2017-11-14 09:45:28,460 [DEBUG] contig 4956 to 5021 2017-11-14 09:45:28,460 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,460 [DEBUG] Moving from ref0760443.11e3 to ref0760443.12e5 (p=1) 2017-11-14 09:45:28,460 [DEBUG] unimproved gap 2017-11-14 09:45:28,461 [DEBUG] Moving from ref0760443.12e5 to ref0760443.12e3 (p=1) 2017-11-14 09:45:28,461 [DEBUG] contig 2017-11-14 09:45:28,461 [DEBUG] who? ref0760443.12e5 ref0760443.12e3 2017-11-14 09:45:28,461 [DEBUG] Grabbing contig between nodes ref0760443.12e5 & ref0760443.12e3 - [trim 0, 0] 2017-11-14 09:45:28,461 [DEBUG] contig 5287 to 5419 2017-11-14 09:45:28,461 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,461 [DEBUG] Moving from ref0760443.12e3 to ref0760443.13e5 (p=1) 2017-11-14 09:45:28,461 [DEBUG] unimproved gap 2017-11-14 09:45:28,461 [DEBUG] Moving from ref0760443.13e5 to ref0760443.13e3 (p=1) 2017-11-14 09:45:28,461 [DEBUG] contig 2017-11-14 09:45:28,461 [DEBUG] who? ref0760443.13e5 ref0760443.13e3 2017-11-14 09:45:28,461 [DEBUG] Grabbing contig between nodes ref0760443.13e5 & ref0760443.13e3 - [trim 0, 0] 2017-11-14 09:45:28,461 [DEBUG] contig 5599 to 5793 2017-11-14 09:45:28,461 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,462 [DEBUG] Moving from ref0760443.13e3 to ref0760443.14e5 (p=1) 2017-11-14 09:45:28,462 [DEBUG] unimproved gap 2017-11-14 09:45:28,462 [DEBUG] Moving from ref0760443.14e5 to ref0760443.14e3 (p=1) 2017-11-14 09:45:28,462 [DEBUG] contig 2017-11-14 09:45:28,462 [DEBUG] who? ref0760443.14e5 ref0760443.14e3 2017-11-14 09:45:28,462 [DEBUG] Grabbing contig between nodes ref0760443.14e5 & ref0760443.14e3 - [trim 0, 0] 2017-11-14 09:45:28,462 [DEBUG] contig 5894 to 6030 2017-11-14 09:45:28,462 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,462 [DEBUG] Moving from ref0760443.14e3 to ref0760443.15e5 (p=1) 2017-11-14 09:45:28,462 [DEBUG] unimproved gap 2017-11-14 09:45:28,462 [DEBUG] Moving from ref0760443.15e5 to ref0760443.15e3 (p=1) 2017-11-14 09:45:28,462 [DEBUG] contig 2017-11-14 09:45:28,462 [DEBUG] who? ref0760443.15e5 ref0760443.15e3 2017-11-14 09:45:28,463 [DEBUG] Grabbing contig between nodes ref0760443.15e5 & ref0760443.15e3 - [trim 0, 0] 2017-11-14 09:45:28,463 [DEBUG] contig 6294 to 6373 2017-11-14 09:45:28,463 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,463 [DEBUG] Moving from ref0760443.15e3 to ref0760443.16e5 (p=1) 2017-11-14 09:45:28,463 [DEBUG] unimproved gap 2017-11-14 09:45:28,463 [DEBUG] Moving from ref0760443.16e5 to ref0760443.16e3 (p=1) 2017-11-14 09:45:28,463 [DEBUG] contig 2017-11-14 09:45:28,463 [DEBUG] who? ref0760443.16e5 ref0760443.16e3 2017-11-14 09:45:28,463 [DEBUG] Grabbing contig between nodes ref0760443.16e5 & ref0760443.16e3 - [trim 0, 0] 2017-11-14 09:45:28,463 [DEBUG] contig 6473 to 6657 2017-11-14 09:45:28,463 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,463 [DEBUG] Moving from ref0760443.16e3 to ref0760443.17e5 (p=1) 2017-11-14 09:45:28,463 [DEBUG] unimproved gap 2017-11-14 09:45:28,463 [DEBUG] Moving from ref0760443.17e5 to ref0760443e3 (p=1) 2017-11-14 09:45:28,464 [DEBUG] contig 2017-11-14 09:45:28,464 [DEBUG] who? ref0760443.17e5 ref0760443e3 2017-11-14 09:45:28,464 [DEBUG] Grabbing contig between nodes ref0760443.17e5 & ref0760443e3 - [trim 0, 0] 2017-11-14 09:45:28,464 [DEBUG] contig 6815 to 6916 2017-11-14 09:45:28,464 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,464 [DEBUG] Contig 77 2017-11-14 09:45:28,466 [DEBUG] Moving from ref0459037e5 to ref0459037.0e3 (p=1) 2017-11-14 09:45:28,466 [DEBUG] contig 2017-11-14 09:45:28,466 [DEBUG] who? ref0459037e5 ref0459037.0e3 2017-11-14 09:45:28,466 [DEBUG] Grabbing contig between nodes ref0459037e5 & ref0459037.0e3 - [trim 0, 0] 2017-11-14 09:45:28,466 [DEBUG] contig 0 to 84 2017-11-14 09:45:28,466 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,466 [DEBUG] Moving from ref0459037.0e3 to ref0459037.1e5 (p=1) 2017-11-14 09:45:28,467 [DEBUG] unimproved gap 2017-11-14 09:45:28,467 [DEBUG] Moving from ref0459037.1e5 to ref0459037.1e3 (p=1) 2017-11-14 09:45:28,467 [DEBUG] contig 2017-11-14 09:45:28,467 [DEBUG] who? ref0459037.1e5 ref0459037.1e3 2017-11-14 09:45:28,467 [DEBUG] Grabbing contig between nodes ref0459037.1e5 & ref0459037.1e3 - [trim 0, 0] 2017-11-14 09:45:28,467 [DEBUG] contig 390 to 4832 2017-11-14 09:45:28,467 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,467 [DEBUG] Moving from ref0459037.1e3 to ref0459037.2e5 (p=1) 2017-11-14 09:45:28,467 [DEBUG] unimproved gap 2017-11-14 09:45:28,467 [DEBUG] Moving from ref0459037.2e5 to ref0459037.2e3 (p=1) 2017-11-14 09:45:28,467 [DEBUG] contig 2017-11-14 09:45:28,467 [DEBUG] who? ref0459037.2e5 ref0459037.2e3 2017-11-14 09:45:28,467 [DEBUG] Grabbing contig between nodes ref0459037.2e5 & ref0459037.2e3 - [trim 0, 0] 2017-11-14 09:45:28,468 [DEBUG] contig 4917 to 6118 2017-11-14 09:45:28,468 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,468 [DEBUG] Moving from ref0459037.2e3 to ref0459037.3e5 (p=1) 2017-11-14 09:45:28,468 [DEBUG] unimproved gap 2017-11-14 09:45:28,468 [DEBUG] Moving from ref0459037.3e5 to ref0459037.3e3 (p=1) 2017-11-14 09:45:28,468 [DEBUG] contig 2017-11-14 09:45:28,468 [DEBUG] who? ref0459037.3e5 ref0459037.3e3 2017-11-14 09:45:28,468 [DEBUG] Grabbing contig between nodes ref0459037.3e5 & ref0459037.3e3 - [trim 0, 0] 2017-11-14 09:45:28,468 [DEBUG] contig 6288 to 7012 2017-11-14 09:45:28,468 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,468 [DEBUG] Moving from ref0459037.3e3 to ref0459037.4e5 (p=1) 2017-11-14 09:45:28,468 [DEBUG] unimproved gap 2017-11-14 09:45:28,468 [DEBUG] Moving from ref0459037.4e5 to ref0459037.4e3 (p=1) 2017-11-14 09:45:28,469 [DEBUG] contig 2017-11-14 09:45:28,469 [DEBUG] who? ref0459037.4e5 ref0459037.4e3 2017-11-14 09:45:28,469 [DEBUG] Grabbing contig between nodes ref0459037.4e5 & ref0459037.4e3 - [trim 0, 0] 2017-11-14 09:45:28,469 [DEBUG] contig 7139 to 9412 2017-11-14 09:45:28,469 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,469 [DEBUG] Moving from ref0459037.4e3 to ref0459037.5e5 (p=1) 2017-11-14 09:45:28,469 [DEBUG] unimproved gap 2017-11-14 09:45:28,469 [DEBUG] Moving from ref0459037.5e5 to ref0459037.5e3 (p=1) 2017-11-14 09:45:28,469 [DEBUG] contig 2017-11-14 09:45:28,469 [DEBUG] who? ref0459037.5e5 ref0459037.5e3 2017-11-14 09:45:28,469 [DEBUG] Grabbing contig between nodes ref0459037.5e5 & ref0459037.5e3 - [trim 0, 0] 2017-11-14 09:45:28,469 [DEBUG] contig 9685 to 10622 2017-11-14 09:45:28,469 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,470 [DEBUG] Moving from ref0459037.5e3 to ref0459037.6e5 (p=1) 2017-11-14 09:45:28,470 [DEBUG] unimproved gap 2017-11-14 09:45:28,470 [DEBUG] Moving from ref0459037.6e5 to ref0459037.6e3 (p=1) 2017-11-14 09:45:28,470 [DEBUG] contig 2017-11-14 09:45:28,470 [DEBUG] who? ref0459037.6e5 ref0459037.6e3 2017-11-14 09:45:28,470 [DEBUG] Grabbing contig between nodes ref0459037.6e5 & ref0459037.6e3 - [trim 0, 0] 2017-11-14 09:45:28,470 [DEBUG] contig 10698 to 14297 2017-11-14 09:45:28,470 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,470 [DEBUG] Moving from ref0459037.6e3 to ref0459037.7e5 (p=1) 2017-11-14 09:45:28,470 [DEBUG] unimproved gap 2017-11-14 09:45:28,470 [DEBUG] Moving from ref0459037.7e5 to ref0459037.7e3 (p=1) 2017-11-14 09:45:28,470 [DEBUG] contig 2017-11-14 09:45:28,470 [DEBUG] who? ref0459037.7e5 ref0459037.7e3 2017-11-14 09:45:28,470 [DEBUG] Grabbing contig between nodes ref0459037.7e5 & ref0459037.7e3 - [trim 0, 0] 2017-11-14 09:45:28,471 [DEBUG] contig 14378 to 17059 2017-11-14 09:45:28,471 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,471 [DEBUG] Moving from ref0459037.7e3 to ref0459037.8e5 (p=1) 2017-11-14 09:45:28,471 [DEBUG] unimproved gap 2017-11-14 09:45:28,471 [DEBUG] Moving from ref0459037.8e5 to ref0459037.8e3 (p=1) 2017-11-14 09:45:28,471 [DEBUG] contig 2017-11-14 09:45:28,471 [DEBUG] who? ref0459037.8e5 ref0459037.8e3 2017-11-14 09:45:28,471 [DEBUG] Grabbing contig between nodes ref0459037.8e5 & ref0459037.8e3 - [trim 0, 0] 2017-11-14 09:45:28,471 [DEBUG] contig 17409 to 18108 2017-11-14 09:45:28,471 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,471 [DEBUG] Moving from ref0459037.8e3 to ref0459037.9e5 (p=1) 2017-11-14 09:45:28,471 [DEBUG] unimproved gap 2017-11-14 09:45:28,471 [DEBUG] Moving from ref0459037.9e5 to ref0459037.9e3 (p=1) 2017-11-14 09:45:28,472 [DEBUG] contig 2017-11-14 09:45:28,472 [DEBUG] who? ref0459037.9e5 ref0459037.9e3 2017-11-14 09:45:28,472 [DEBUG] Grabbing contig between nodes ref0459037.9e5 & ref0459037.9e3 - [trim 0, 0] 2017-11-14 09:45:28,472 [DEBUG] contig 18156 to 20104 2017-11-14 09:45:28,472 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,472 [DEBUG] Moving from ref0459037.9e3 to ref0459037.10e5 (p=1) 2017-11-14 09:45:28,472 [DEBUG] unimproved gap 2017-11-14 09:45:28,472 [DEBUG] Moving from ref0459037.10e5 to ref0459037.10e3 (p=1) 2017-11-14 09:45:28,472 [DEBUG] contig 2017-11-14 09:45:28,472 [DEBUG] who? ref0459037.10e5 ref0459037.10e3 2017-11-14 09:45:28,472 [DEBUG] Grabbing contig between nodes ref0459037.10e5 & ref0459037.10e3 - [trim 0, 0] 2017-11-14 09:45:28,472 [DEBUG] contig 20289 to 20623 2017-11-14 09:45:28,472 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,473 [DEBUG] Moving from ref0459037.10e3 to ref0459037.11e5 (p=1) 2017-11-14 09:45:28,473 [DEBUG] unimproved gap 2017-11-14 09:45:28,473 [DEBUG] Moving from ref0459037.11e5 to ref0459037.11e3 (p=1) 2017-11-14 09:45:28,473 [DEBUG] contig 2017-11-14 09:45:28,473 [DEBUG] who? ref0459037.11e5 ref0459037.11e3 2017-11-14 09:45:28,473 [DEBUG] Grabbing contig between nodes ref0459037.11e5 & ref0459037.11e3 - [trim 0, 0] 2017-11-14 09:45:28,473 [DEBUG] contig 20662 to 23054 2017-11-14 09:45:28,473 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,473 [DEBUG] Moving from ref0459037.11e3 to ref0459037.12e5 (p=1) 2017-11-14 09:45:28,473 [DEBUG] unimproved gap 2017-11-14 09:45:28,473 [DEBUG] Moving from ref0459037.12e5 to ref0459037.12e3 (p=1) 2017-11-14 09:45:28,473 [DEBUG] contig 2017-11-14 09:45:28,473 [DEBUG] who? ref0459037.12e5 ref0459037.12e3 2017-11-14 09:45:28,474 [DEBUG] Grabbing contig between nodes ref0459037.12e5 & ref0459037.12e3 - [trim 0, 0] 2017-11-14 09:45:28,474 [DEBUG] contig 23214 to 23778 2017-11-14 09:45:28,474 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,474 [DEBUG] Moving from ref0459037.12e3 to ref0459037.13e5 (p=1) 2017-11-14 09:45:28,474 [DEBUG] unimproved gap 2017-11-14 09:45:28,474 [DEBUG] Moving from ref0459037.13e5 to ref0459037.13e3 (p=1) 2017-11-14 09:45:28,474 [DEBUG] contig 2017-11-14 09:45:28,474 [DEBUG] who? ref0459037.13e5 ref0459037.13e3 2017-11-14 09:45:28,474 [DEBUG] Grabbing contig between nodes ref0459037.13e5 & ref0459037.13e3 - [trim 0, 0] 2017-11-14 09:45:28,474 [DEBUG] contig 23950 to 24564 2017-11-14 09:45:28,474 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,474 [DEBUG] Moving from ref0459037.13e3 to ref0459037.14e5 (p=1) 2017-11-14 09:45:28,474 [DEBUG] unimproved gap 2017-11-14 09:45:28,475 [DEBUG] Moving from ref0459037.14e5 to ref0459037.14e3 (p=1) 2017-11-14 09:45:28,475 [DEBUG] contig 2017-11-14 09:45:28,475 [DEBUG] who? ref0459037.14e5 ref0459037.14e3 2017-11-14 09:45:28,475 [DEBUG] Grabbing contig between nodes ref0459037.14e5 & ref0459037.14e3 - [trim 0, 0] 2017-11-14 09:45:28,475 [DEBUG] contig 24705 to 24872 2017-11-14 09:45:28,475 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,475 [DEBUG] Moving from ref0459037.14e3 to ref0459037.15e5 (p=1) 2017-11-14 09:45:28,475 [DEBUG] unimproved gap 2017-11-14 09:45:28,475 [DEBUG] Moving from ref0459037.15e5 to ref0459037.15e3 (p=1) 2017-11-14 09:45:28,475 [DEBUG] contig 2017-11-14 09:45:28,475 [DEBUG] who? ref0459037.15e5 ref0459037.15e3 2017-11-14 09:45:28,475 [DEBUG] Grabbing contig between nodes ref0459037.15e5 & ref0459037.15e3 - [trim 0, 0] 2017-11-14 09:45:28,475 [DEBUG] contig 24904 to 29736 2017-11-14 09:45:28,476 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,476 [DEBUG] Moving from ref0459037.15e3 to ref0459037.16e5 (p=1) 2017-11-14 09:45:28,476 [DEBUG] unimproved gap 2017-11-14 09:45:28,476 [DEBUG] Moving from ref0459037.16e5 to ref0459037.16e3 (p=1) 2017-11-14 09:45:28,476 [DEBUG] contig 2017-11-14 09:45:28,476 [DEBUG] who? ref0459037.16e5 ref0459037.16e3 2017-11-14 09:45:28,476 [DEBUG] Grabbing contig between nodes ref0459037.16e5 & ref0459037.16e3 - [trim 0, 0] 2017-11-14 09:45:28,476 [DEBUG] contig 29940 to 33215 2017-11-14 09:45:28,476 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,476 [DEBUG] Moving from ref0459037.16e3 to ref0459037.17e5 (p=1) 2017-11-14 09:45:28,476 [DEBUG] unimproved gap 2017-11-14 09:45:28,476 [DEBUG] Moving from ref0459037.17e5 to ref0459037e3 (p=1) 2017-11-14 09:45:28,476 [DEBUG] contig 2017-11-14 09:45:28,477 [DEBUG] who? ref0459037.17e5 ref0459037e3 2017-11-14 09:45:28,477 [DEBUG] Grabbing contig between nodes ref0459037.17e5 & ref0459037e3 - [trim 0, 0] 2017-11-14 09:45:28,477 [DEBUG] contig 33299 to 33436 2017-11-14 09:45:28,477 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,477 [DEBUG] Contig 78 2017-11-14 09:45:28,479 [DEBUG] Moving from ref0281002e5 to ref0281002.0e3 (p=1) 2017-11-14 09:45:28,479 [DEBUG] contig 2017-11-14 09:45:28,479 [DEBUG] who? ref0281002e5 ref0281002.0e3 2017-11-14 09:45:28,479 [DEBUG] Grabbing contig between nodes ref0281002e5 & ref0281002.0e3 - [trim 0, 0] 2017-11-14 09:45:28,479 [DEBUG] contig 0 to 334 2017-11-14 09:45:28,479 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,479 [DEBUG] Moving from ref0281002.0e3 to ref0281002.1e5 (p=1) 2017-11-14 09:45:28,480 [DEBUG] unimproved gap 2017-11-14 09:45:28,480 [DEBUG] Moving from ref0281002.1e5 to ref0281002.1e3 (p=1) 2017-11-14 09:45:28,480 [DEBUG] contig 2017-11-14 09:45:28,480 [DEBUG] who? ref0281002.1e5 ref0281002.1e3 2017-11-14 09:45:28,480 [DEBUG] Grabbing contig between nodes ref0281002.1e5 & ref0281002.1e3 - [trim 0, 0] 2017-11-14 09:45:28,480 [DEBUG] contig 372 to 830 2017-11-14 09:45:28,480 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,480 [DEBUG] Moving from ref0281002.1e3 to ref0281002.2e5 (p=1) 2017-11-14 09:45:28,480 [DEBUG] unimproved gap 2017-11-14 09:45:28,480 [DEBUG] Moving from ref0281002.2e5 to ref0281002.2e3 (p=1) 2017-11-14 09:45:28,480 [DEBUG] contig 2017-11-14 09:45:28,480 [DEBUG] who? ref0281002.2e5 ref0281002.2e3 2017-11-14 09:45:28,480 [DEBUG] Grabbing contig between nodes ref0281002.2e5 & ref0281002.2e3 - [trim 0, 0] 2017-11-14 09:45:28,481 [DEBUG] contig 964 to 1285 2017-11-14 09:45:28,481 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,481 [DEBUG] Moving from ref0281002.2e3 to ref0281002.3e5 (p=1) 2017-11-14 09:45:28,481 [DEBUG] unimproved gap 2017-11-14 09:45:28,481 [DEBUG] Moving from ref0281002.3e5 to ref0281002.3e3 (p=1) 2017-11-14 09:45:28,481 [DEBUG] contig 2017-11-14 09:45:28,481 [DEBUG] who? ref0281002.3e5 ref0281002.3e3 2017-11-14 09:45:28,481 [DEBUG] Grabbing contig between nodes ref0281002.3e5 & ref0281002.3e3 - [trim 0, 0] 2017-11-14 09:45:28,481 [DEBUG] contig 1435 to 2457 2017-11-14 09:45:28,481 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,481 [DEBUG] Moving from ref0281002.3e3 to ref0281002.4e5 (p=1) 2017-11-14 09:45:28,481 [DEBUG] unimproved gap 2017-11-14 09:45:28,481 [DEBUG] Moving from ref0281002.4e5 to ref0281002.4e3 (p=1) 2017-11-14 09:45:28,482 [DEBUG] contig 2017-11-14 09:45:28,482 [DEBUG] who? ref0281002.4e5 ref0281002.4e3 2017-11-14 09:45:28,482 [DEBUG] Grabbing contig between nodes ref0281002.4e5 & ref0281002.4e3 - [trim 0, 0] 2017-11-14 09:45:28,482 [DEBUG] contig 2642 to 5186 2017-11-14 09:45:28,482 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,482 [DEBUG] Moving from ref0281002.4e3 to ref0281002.5e5 (p=1) 2017-11-14 09:45:28,482 [DEBUG] unimproved gap 2017-11-14 09:45:28,482 [DEBUG] Moving from ref0281002.5e5 to ref0281002.5e3 (p=1) 2017-11-14 09:45:28,482 [DEBUG] contig 2017-11-14 09:45:28,482 [DEBUG] who? ref0281002.5e5 ref0281002.5e3 2017-11-14 09:45:28,482 [DEBUG] Grabbing contig between nodes ref0281002.5e5 & ref0281002.5e3 - [trim 0, 0] 2017-11-14 09:45:28,482 [DEBUG] contig 5478 to 5518 2017-11-14 09:45:28,482 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,482 [DEBUG] Moving from ref0281002.5e3 to ref0281002.6e5 (p=1) 2017-11-14 09:45:28,483 [DEBUG] unimproved gap 2017-11-14 09:45:28,483 [DEBUG] Moving from ref0281002.6e5 to ref0281002.6e3 (p=1) 2017-11-14 09:45:28,483 [DEBUG] contig 2017-11-14 09:45:28,483 [DEBUG] who? ref0281002.6e5 ref0281002.6e3 2017-11-14 09:45:28,483 [DEBUG] Grabbing contig between nodes ref0281002.6e5 & ref0281002.6e3 - [trim 0, 0] 2017-11-14 09:45:28,483 [DEBUG] contig 5760 to 9790 2017-11-14 09:45:28,483 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,483 [DEBUG] Moving from ref0281002.6e3 to ref0281002.7e5 (p=1) 2017-11-14 09:45:28,483 [DEBUG] unimproved gap 2017-11-14 09:45:28,483 [DEBUG] Moving from ref0281002.7e5 to ref0281002.7e3 (p=1) 2017-11-14 09:45:28,483 [DEBUG] contig 2017-11-14 09:45:28,483 [DEBUG] who? ref0281002.7e5 ref0281002.7e3 2017-11-14 09:45:28,483 [DEBUG] Grabbing contig between nodes ref0281002.7e5 & ref0281002.7e3 - [trim 0, 0] 2017-11-14 09:45:28,484 [DEBUG] contig 10133 to 10465 2017-11-14 09:45:28,484 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,484 [DEBUG] Moving from ref0281002.7e3 to ref0281002.8e5 (p=1) 2017-11-14 09:45:28,484 [DEBUG] unimproved gap 2017-11-14 09:45:28,484 [DEBUG] Moving from ref0281002.8e5 to ref0281002.8e3 (p=1) 2017-11-14 09:45:28,484 [DEBUG] contig 2017-11-14 09:45:28,484 [DEBUG] who? ref0281002.8e5 ref0281002.8e3 2017-11-14 09:45:28,484 [DEBUG] Grabbing contig between nodes ref0281002.8e5 & ref0281002.8e3 - [trim 0, 0] 2017-11-14 09:45:28,484 [DEBUG] contig 10585 to 10673 2017-11-14 09:45:28,484 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,484 [DEBUG] Moving from ref0281002.8e3 to ref0281002.9e5 (p=1) 2017-11-14 09:45:28,484 [DEBUG] unimproved gap 2017-11-14 09:45:28,484 [DEBUG] Moving from ref0281002.9e5 to ref0281002.9e3 (p=1) 2017-11-14 09:45:28,485 [DEBUG] contig 2017-11-14 09:45:28,485 [DEBUG] who? ref0281002.9e5 ref0281002.9e3 2017-11-14 09:45:28,485 [DEBUG] Grabbing contig between nodes ref0281002.9e5 & ref0281002.9e3 - [trim 0, 0] 2017-11-14 09:45:28,485 [DEBUG] contig 10736 to 11098 2017-11-14 09:45:28,485 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,485 [DEBUG] Moving from ref0281002.9e3 to ref0281002.10e5 (p=1) 2017-11-14 09:45:28,485 [DEBUG] unimproved gap 2017-11-14 09:45:28,485 [DEBUG] Moving from ref0281002.10e5 to ref0281002.10e3 (p=1) 2017-11-14 09:45:28,485 [DEBUG] contig 2017-11-14 09:45:28,485 [DEBUG] who? ref0281002.10e5 ref0281002.10e3 2017-11-14 09:45:28,485 [DEBUG] Grabbing contig between nodes ref0281002.10e5 & ref0281002.10e3 - [trim 0, 0] 2017-11-14 09:45:28,485 [DEBUG] contig 11189 to 11261 2017-11-14 09:45:28,485 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,485 [DEBUG] Moving from ref0281002.10e3 to ref0281002.11e5 (p=1) 2017-11-14 09:45:28,486 [DEBUG] unimproved gap 2017-11-14 09:45:28,486 [DEBUG] Moving from ref0281002.11e5 to ref0281002.11e3 (p=1) 2017-11-14 09:45:28,486 [DEBUG] contig 2017-11-14 09:45:28,486 [DEBUG] who? ref0281002.11e5 ref0281002.11e3 2017-11-14 09:45:28,486 [DEBUG] Grabbing contig between nodes ref0281002.11e5 & ref0281002.11e3 - [trim 0, 0] 2017-11-14 09:45:28,486 [DEBUG] contig 11345 to 13264 2017-11-14 09:45:28,486 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,486 [DEBUG] Moving from ref0281002.11e3 to ref0281002.12e5 (p=1) 2017-11-14 09:45:28,486 [DEBUG] unimproved gap 2017-11-14 09:45:28,486 [DEBUG] Moving from ref0281002.12e5 to ref0281002.12e3 (p=1) 2017-11-14 09:45:28,486 [DEBUG] contig 2017-11-14 09:45:28,486 [DEBUG] who? ref0281002.12e5 ref0281002.12e3 2017-11-14 09:45:28,486 [DEBUG] Grabbing contig between nodes ref0281002.12e5 & ref0281002.12e3 - [trim 0, 0] 2017-11-14 09:45:28,487 [DEBUG] contig 13622 to 14232 2017-11-14 09:45:28,487 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,487 [DEBUG] Moving from ref0281002.12e3 to ref0281002.13e5 (p=1) 2017-11-14 09:45:28,487 [DEBUG] unimproved gap 2017-11-14 09:45:28,487 [DEBUG] Moving from ref0281002.13e5 to ref0281002.13e3 (p=1) 2017-11-14 09:45:28,487 [DEBUG] contig 2017-11-14 09:45:28,487 [DEBUG] who? ref0281002.13e5 ref0281002.13e3 2017-11-14 09:45:28,487 [DEBUG] Grabbing contig between nodes ref0281002.13e5 & ref0281002.13e3 - [trim 0, 0] 2017-11-14 09:45:28,487 [DEBUG] contig 14298 to 14465 2017-11-14 09:45:28,487 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,487 [DEBUG] Moving from ref0281002.13e3 to ref0281002.14e5 (p=1) 2017-11-14 09:45:28,487 [DEBUG] unimproved gap 2017-11-14 09:45:28,487 [DEBUG] Moving from ref0281002.14e5 to ref0281002.14e3 (p=1) 2017-11-14 09:45:28,488 [DEBUG] contig 2017-11-14 09:45:28,488 [DEBUG] who? ref0281002.14e5 ref0281002.14e3 2017-11-14 09:45:28,488 [DEBUG] Grabbing contig between nodes ref0281002.14e5 & ref0281002.14e3 - [trim 0, 0] 2017-11-14 09:45:28,488 [DEBUG] contig 14772 to 15906 2017-11-14 09:45:28,488 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,488 [DEBUG] Moving from ref0281002.14e3 to ref0281002.15e5 (p=1) 2017-11-14 09:45:28,488 [DEBUG] unimproved gap 2017-11-14 09:45:28,488 [DEBUG] Moving from ref0281002.15e5 to ref0281002.15e3 (p=1) 2017-11-14 09:45:28,488 [DEBUG] contig 2017-11-14 09:45:28,488 [DEBUG] who? ref0281002.15e5 ref0281002.15e3 2017-11-14 09:45:28,488 [DEBUG] Grabbing contig between nodes ref0281002.15e5 & ref0281002.15e3 - [trim 0, 0] 2017-11-14 09:45:28,488 [DEBUG] contig 16431 to 17287 2017-11-14 09:45:28,488 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,489 [DEBUG] Moving from ref0281002.15e3 to ref0281002.16e5 (p=1) 2017-11-14 09:45:28,489 [DEBUG] unimproved gap 2017-11-14 09:45:28,489 [DEBUG] Moving from ref0281002.16e5 to ref0281002.16e3 (p=1) 2017-11-14 09:45:28,489 [DEBUG] contig 2017-11-14 09:45:28,489 [DEBUG] who? ref0281002.16e5 ref0281002.16e3 2017-11-14 09:45:28,489 [DEBUG] Grabbing contig between nodes ref0281002.16e5 & ref0281002.16e3 - [trim 0, 0] 2017-11-14 09:45:28,489 [DEBUG] contig 17566 to 18371 2017-11-14 09:45:28,489 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,489 [DEBUG] Moving from ref0281002.16e3 to ref0281002.17e5 (p=1) 2017-11-14 09:45:28,489 [DEBUG] unimproved gap 2017-11-14 09:45:28,489 [DEBUG] Moving from ref0281002.17e5 to ref0281002e3 (p=1) 2017-11-14 09:45:28,489 [DEBUG] contig 2017-11-14 09:45:28,489 [DEBUG] who? ref0281002.17e5 ref0281002e3 2017-11-14 09:45:28,490 [DEBUG] Grabbing contig between nodes ref0281002.17e5 & ref0281002e3 - [trim 0, 0] 2017-11-14 09:45:28,490 [DEBUG] contig 18496 to 22075 2017-11-14 09:45:28,490 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,490 [DEBUG] Contig 79 2017-11-14 09:45:28,492 [DEBUG] Moving from ref0293553e5 to ref0293553.0e3 (p=1) 2017-11-14 09:45:28,492 [DEBUG] contig 2017-11-14 09:45:28,492 [DEBUG] who? ref0293553e5 ref0293553.0e3 2017-11-14 09:45:28,492 [DEBUG] Grabbing contig between nodes ref0293553e5 & ref0293553.0e3 - [trim 0, 0] 2017-11-14 09:45:28,492 [DEBUG] contig 0 to 1811 2017-11-14 09:45:28,492 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,492 [DEBUG] Moving from ref0293553.0e3 to ref0293553.1e5 (p=1) 2017-11-14 09:45:28,492 [DEBUG] unimproved gap 2017-11-14 09:45:28,492 [DEBUG] Moving from ref0293553.1e5 to ref0293553.1e3 (p=1) 2017-11-14 09:45:28,493 [DEBUG] contig 2017-11-14 09:45:28,493 [DEBUG] who? ref0293553.1e5 ref0293553.1e3 2017-11-14 09:45:28,493 [DEBUG] Grabbing contig between nodes ref0293553.1e5 & ref0293553.1e3 - [trim 0, 0] 2017-11-14 09:45:28,493 [DEBUG] contig 2095 to 2662 2017-11-14 09:45:28,493 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,493 [DEBUG] Moving from ref0293553.1e3 to ref0293553.2e5 (p=1) 2017-11-14 09:45:28,493 [DEBUG] unimproved gap 2017-11-14 09:45:28,493 [DEBUG] Moving from ref0293553.2e5 to ref0293553.2e3 (p=1) 2017-11-14 09:45:28,493 [DEBUG] contig 2017-11-14 09:45:28,493 [DEBUG] who? ref0293553.2e5 ref0293553.2e3 2017-11-14 09:45:28,493 [DEBUG] Grabbing contig between nodes ref0293553.2e5 & ref0293553.2e3 - [trim 0, 0] 2017-11-14 09:45:28,493 [DEBUG] contig 2763 to 5458 2017-11-14 09:45:28,493 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,494 [DEBUG] Moving from ref0293553.2e3 to ref0293553.3e5 (p=1) 2017-11-14 09:45:28,494 [DEBUG] unimproved gap 2017-11-14 09:45:28,494 [DEBUG] Moving from ref0293553.3e5 to ref0293553.3e3 (p=1) 2017-11-14 09:45:28,494 [DEBUG] contig 2017-11-14 09:45:28,494 [DEBUG] who? ref0293553.3e5 ref0293553.3e3 2017-11-14 09:45:28,494 [DEBUG] Grabbing contig between nodes ref0293553.3e5 & ref0293553.3e3 - [trim 0, 0] 2017-11-14 09:45:28,494 [DEBUG] contig 6030 to 7132 2017-11-14 09:45:28,494 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,494 [DEBUG] Moving from ref0293553.3e3 to ref0293553.4e5 (p=1) 2017-11-14 09:45:28,494 [DEBUG] unimproved gap 2017-11-14 09:45:28,494 [DEBUG] Moving from ref0293553.4e5 to ref0293553.4e3 (p=1) 2017-11-14 09:45:28,494 [DEBUG] contig 2017-11-14 09:45:28,495 [DEBUG] who? ref0293553.4e5 ref0293553.4e3 2017-11-14 09:45:28,495 [DEBUG] Grabbing contig between nodes ref0293553.4e5 & ref0293553.4e3 - [trim 0, 0] 2017-11-14 09:45:28,495 [DEBUG] contig 7778 to 11087 2017-11-14 09:45:28,495 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,495 [DEBUG] Moving from ref0293553.4e3 to ref0293553.5e5 (p=1) 2017-11-14 09:45:28,495 [DEBUG] unimproved gap 2017-11-14 09:45:28,495 [DEBUG] Moving from ref0293553.5e5 to ref0293553.5e3 (p=1) 2017-11-14 09:45:28,495 [DEBUG] contig 2017-11-14 09:45:28,495 [DEBUG] who? ref0293553.5e5 ref0293553.5e3 2017-11-14 09:45:28,495 [DEBUG] Grabbing contig between nodes ref0293553.5e5 & ref0293553.5e3 - [trim 0, 0] 2017-11-14 09:45:28,495 [DEBUG] contig 11388 to 11442 2017-11-14 09:45:28,495 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,495 [DEBUG] Moving from ref0293553.5e3 to ref0293553.6e5 (p=1) 2017-11-14 09:45:28,495 [DEBUG] unimproved gap 2017-11-14 09:45:28,496 [DEBUG] Moving from ref0293553.6e5 to ref0293553.6e3 (p=1) 2017-11-14 09:45:28,496 [DEBUG] contig 2017-11-14 09:45:28,496 [DEBUG] who? ref0293553.6e5 ref0293553.6e3 2017-11-14 09:45:28,496 [DEBUG] Grabbing contig between nodes ref0293553.6e5 & ref0293553.6e3 - [trim 0, 0] 2017-11-14 09:45:28,496 [DEBUG] contig 11471 to 13221 2017-11-14 09:45:28,496 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,496 [DEBUG] Moving from ref0293553.6e3 to ref0293553.7e5 (p=1) 2017-11-14 09:45:28,496 [DEBUG] unimproved gap 2017-11-14 09:45:28,496 [DEBUG] Moving from ref0293553.7e5 to ref0293553.7e3 (p=1) 2017-11-14 09:45:28,496 [DEBUG] contig 2017-11-14 09:45:28,496 [DEBUG] who? ref0293553.7e5 ref0293553.7e3 2017-11-14 09:45:28,496 [DEBUG] Grabbing contig between nodes ref0293553.7e5 & ref0293553.7e3 - [trim 0, 0] 2017-11-14 09:45:28,496 [DEBUG] contig 13318 to 13350 2017-11-14 09:45:28,497 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,497 [DEBUG] Moving from ref0293553.7e3 to ref0293553.8e5 (p=1) 2017-11-14 09:45:28,497 [DEBUG] unimproved gap 2017-11-14 09:45:28,497 [DEBUG] Moving from ref0293553.8e5 to ref0293553.8e3 (p=1) 2017-11-14 09:45:28,497 [DEBUG] contig 2017-11-14 09:45:28,497 [DEBUG] who? ref0293553.8e5 ref0293553.8e3 2017-11-14 09:45:28,497 [DEBUG] Grabbing contig between nodes ref0293553.8e5 & ref0293553.8e3 - [trim 0, 0] 2017-11-14 09:45:28,497 [DEBUG] contig 13491 to 14216 2017-11-14 09:45:28,497 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,497 [DEBUG] Moving from ref0293553.8e3 to ref0293553.9e5 (p=1) 2017-11-14 09:45:28,497 [DEBUG] unimproved gap 2017-11-14 09:45:28,497 [DEBUG] Moving from ref0293553.9e5 to ref0293553.9e3 (p=1) 2017-11-14 09:45:28,497 [DEBUG] contig 2017-11-14 09:45:28,498 [DEBUG] who? ref0293553.9e5 ref0293553.9e3 2017-11-14 09:45:28,498 [DEBUG] Grabbing contig between nodes ref0293553.9e5 & ref0293553.9e3 - [trim 0, 0] 2017-11-14 09:45:28,498 [DEBUG] contig 14380 to 16224 2017-11-14 09:45:28,498 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,498 [DEBUG] Moving from ref0293553.9e3 to ref0293553.10e5 (p=1) 2017-11-14 09:45:28,498 [DEBUG] unimproved gap 2017-11-14 09:45:28,498 [DEBUG] Moving from ref0293553.10e5 to ref0293553.10e3 (p=1) 2017-11-14 09:45:28,498 [DEBUG] contig 2017-11-14 09:45:28,498 [DEBUG] who? ref0293553.10e5 ref0293553.10e3 2017-11-14 09:45:28,498 [DEBUG] Grabbing contig between nodes ref0293553.10e5 & ref0293553.10e3 - [trim 0, 0] 2017-11-14 09:45:28,498 [DEBUG] contig 16289 to 16364 2017-11-14 09:45:28,498 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,498 [DEBUG] Moving from ref0293553.10e3 to ref0293553.11e5 (p=1) 2017-11-14 09:45:28,498 [DEBUG] unimproved gap 2017-11-14 09:45:28,499 [DEBUG] Moving from ref0293553.11e5 to ref0293553.11e3 (p=1) 2017-11-14 09:45:28,499 [DEBUG] contig 2017-11-14 09:45:28,499 [DEBUG] who? ref0293553.11e5 ref0293553.11e3 2017-11-14 09:45:28,499 [DEBUG] Grabbing contig between nodes ref0293553.11e5 & ref0293553.11e3 - [trim 0, 0] 2017-11-14 09:45:28,499 [DEBUG] contig 16465 to 16616 2017-11-14 09:45:28,499 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,499 [DEBUG] Moving from ref0293553.11e3 to ref0293553.12e5 (p=1) 2017-11-14 09:45:28,499 [DEBUG] unimproved gap 2017-11-14 09:45:28,499 [DEBUG] Moving from ref0293553.12e5 to ref0293553.12e3 (p=1) 2017-11-14 09:45:28,499 [DEBUG] contig 2017-11-14 09:45:28,499 [DEBUG] who? ref0293553.12e5 ref0293553.12e3 2017-11-14 09:45:28,499 [DEBUG] Grabbing contig between nodes ref0293553.12e5 & ref0293553.12e3 - [trim 0, 0] 2017-11-14 09:45:28,499 [DEBUG] contig 16761 to 16822 2017-11-14 09:45:28,499 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,500 [DEBUG] Moving from ref0293553.12e3 to ref0293553.13e5 (p=1) 2017-11-14 09:45:28,500 [DEBUG] unimproved gap 2017-11-14 09:45:28,500 [DEBUG] Moving from ref0293553.13e5 to ref0293553.13e3 (p=1) 2017-11-14 09:45:28,500 [DEBUG] contig 2017-11-14 09:45:28,500 [DEBUG] who? ref0293553.13e5 ref0293553.13e3 2017-11-14 09:45:28,500 [DEBUG] Grabbing contig between nodes ref0293553.13e5 & ref0293553.13e3 - [trim 0, 0] 2017-11-14 09:45:28,500 [DEBUG] contig 17170 to 17258 2017-11-14 09:45:28,500 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,500 [DEBUG] Moving from ref0293553.13e3 to ref0293553.14e5 (p=1) 2017-11-14 09:45:28,500 [DEBUG] unimproved gap 2017-11-14 09:45:28,500 [DEBUG] Moving from ref0293553.14e5 to ref0293553.14e3 (p=1) 2017-11-14 09:45:28,500 [DEBUG] contig 2017-11-14 09:45:28,501 [DEBUG] who? ref0293553.14e5 ref0293553.14e3 2017-11-14 09:45:28,501 [DEBUG] Grabbing contig between nodes ref0293553.14e5 & ref0293553.14e3 - [trim 0, 0] 2017-11-14 09:45:28,501 [DEBUG] contig 17345 to 17408 2017-11-14 09:45:28,501 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,501 [DEBUG] Moving from ref0293553.14e3 to ref0293553.15e5 (p=1) 2017-11-14 09:45:28,501 [DEBUG] unimproved gap 2017-11-14 09:45:28,501 [DEBUG] Moving from ref0293553.15e5 to ref0293553.15e3 (p=1) 2017-11-14 09:45:28,501 [DEBUG] contig 2017-11-14 09:45:28,501 [DEBUG] who? ref0293553.15e5 ref0293553.15e3 2017-11-14 09:45:28,501 [DEBUG] Grabbing contig between nodes ref0293553.15e5 & ref0293553.15e3 - [trim 0, 0] 2017-11-14 09:45:28,501 [DEBUG] contig 17470 to 17621 2017-11-14 09:45:28,501 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,502 [DEBUG] Moving from ref0293553.15e3 to ref0293553.16e5 (p=1) 2017-11-14 09:45:28,502 [DEBUG] unimproved gap 2017-11-14 09:45:28,502 [DEBUG] Moving from ref0293553.16e5 to ref0293553.16e3 (p=1) 2017-11-14 09:45:28,502 [DEBUG] contig 2017-11-14 09:45:28,502 [DEBUG] who? ref0293553.16e5 ref0293553.16e3 2017-11-14 09:45:28,502 [DEBUG] Grabbing contig between nodes ref0293553.16e5 & ref0293553.16e3 - [trim 0, 0] 2017-11-14 09:45:28,502 [DEBUG] contig 17659 to 19627 2017-11-14 09:45:28,502 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,502 [DEBUG] Moving from ref0293553.16e3 to ref0293553.17e5 (p=1) 2017-11-14 09:45:28,502 [DEBUG] unimproved gap 2017-11-14 09:45:28,502 [DEBUG] Moving from ref0293553.17e5 to ref0293553e3 (p=1) 2017-11-14 09:45:28,502 [DEBUG] contig 2017-11-14 09:45:28,502 [DEBUG] who? ref0293553.17e5 ref0293553e3 2017-11-14 09:45:28,502 [DEBUG] Grabbing contig between nodes ref0293553.17e5 & ref0293553e3 - [trim 0, 0] 2017-11-14 09:45:28,503 [DEBUG] contig 19723 to 20540 2017-11-14 09:45:28,503 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,503 [DEBUG] Contig 80 2017-11-14 09:45:28,505 [DEBUG] Moving from ref0311067e3 to ref0311067.17e5 (p=1) 2017-11-14 09:45:28,505 [DEBUG] contig 2017-11-14 09:45:28,505 [DEBUG] who? ref0311067.17e5 ref0311067e3 2017-11-14 09:45:28,505 [DEBUG] Grabbing contig between nodes ref0311067.17e5 & ref0311067e3 - [trim 0, 0] 2017-11-14 09:45:28,505 [DEBUG] contig 45367 to 45428 2017-11-14 09:45:28,505 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,505 [DEBUG] Moving from ref0311067.17e5 to ref0311067.16e3 (p=1) 2017-11-14 09:45:28,505 [DEBUG] unimproved gap 2017-11-14 09:45:28,505 [DEBUG] Moving from ref0311067.16e3 to ref0311067.16e5 (p=1) 2017-11-14 09:45:28,505 [DEBUG] contig 2017-11-14 09:45:28,506 [DEBUG] who? ref0311067.16e5 ref0311067.16e3 2017-11-14 09:45:28,506 [DEBUG] Grabbing contig between nodes ref0311067.16e5 & ref0311067.16e3 - [trim 0, 0] 2017-11-14 09:45:28,506 [DEBUG] contig 44022 to 45184 2017-11-14 09:45:28,506 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,506 [DEBUG] Moving from ref0311067.16e5 to ref0311067.15e3 (p=1) 2017-11-14 09:45:28,506 [DEBUG] unimproved gap 2017-11-14 09:45:28,506 [DEBUG] Moving from ref0311067.15e3 to ref0311067.15e5 (p=1) 2017-11-14 09:45:28,506 [DEBUG] contig 2017-11-14 09:45:28,506 [DEBUG] who? ref0311067.15e5 ref0311067.15e3 2017-11-14 09:45:28,506 [DEBUG] Grabbing contig between nodes ref0311067.15e5 & ref0311067.15e3 - [trim 0, 0] 2017-11-14 09:45:28,506 [DEBUG] contig 41634 to 43820 2017-11-14 09:45:28,506 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,506 [DEBUG] Moving from ref0311067.15e5 to ref0311067.14e3 (p=1) 2017-11-14 09:45:28,507 [DEBUG] unimproved gap 2017-11-14 09:45:28,507 [DEBUG] Moving from ref0311067.14e3 to ref0311067.14e5 (p=1) 2017-11-14 09:45:28,507 [DEBUG] contig 2017-11-14 09:45:28,507 [DEBUG] who? ref0311067.14e5 ref0311067.14e3 2017-11-14 09:45:28,507 [DEBUG] Grabbing contig between nodes ref0311067.14e5 & ref0311067.14e3 - [trim 0, 0] 2017-11-14 09:45:28,507 [DEBUG] contig 35274 to 41287 2017-11-14 09:45:28,507 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,507 [DEBUG] Moving from ref0311067.14e5 to ref0311067.13e3 (p=1) 2017-11-14 09:45:28,507 [DEBUG] unimproved gap 2017-11-14 09:45:28,507 [DEBUG] Moving from ref0311067.13e3 to ref0311067.13e5 (p=1) 2017-11-14 09:45:28,507 [DEBUG] contig 2017-11-14 09:45:28,507 [DEBUG] who? ref0311067.13e5 ref0311067.13e3 2017-11-14 09:45:28,507 [DEBUG] Grabbing contig between nodes ref0311067.13e5 & ref0311067.13e3 - [trim 0, 0] 2017-11-14 09:45:28,508 [DEBUG] contig 34956 to 35011 2017-11-14 09:45:28,508 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,508 [DEBUG] Moving from ref0311067.13e5 to ref0311067.12e3 (p=1) 2017-11-14 09:45:28,508 [DEBUG] unimproved gap 2017-11-14 09:45:28,508 [DEBUG] Moving from ref0311067.12e3 to ref0311067.12e5 (p=1) 2017-11-14 09:45:28,508 [DEBUG] contig 2017-11-14 09:45:28,508 [DEBUG] who? ref0311067.12e5 ref0311067.12e3 2017-11-14 09:45:28,508 [DEBUG] Grabbing contig between nodes ref0311067.12e5 & ref0311067.12e3 - [trim 0, 0] 2017-11-14 09:45:28,508 [DEBUG] contig 31819 to 34927 2017-11-14 09:45:28,508 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,508 [DEBUG] Moving from ref0311067.12e5 to ref0311067.11e3 (p=1) 2017-11-14 09:45:28,508 [DEBUG] unimproved gap 2017-11-14 09:45:28,509 [DEBUG] Moving from ref0311067.11e3 to ref0311067.11e5 (p=1) 2017-11-14 09:45:28,509 [DEBUG] contig 2017-11-14 09:45:28,509 [DEBUG] who? ref0311067.11e5 ref0311067.11e3 2017-11-14 09:45:28,509 [DEBUG] Grabbing contig between nodes ref0311067.11e5 & ref0311067.11e3 - [trim 0, 0] 2017-11-14 09:45:28,509 [DEBUG] contig 31097 to 31576 2017-11-14 09:45:28,509 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,509 [DEBUG] Moving from ref0311067.11e5 to ref0311067.10e3 (p=1) 2017-11-14 09:45:28,509 [DEBUG] unimproved gap 2017-11-14 09:45:28,509 [DEBUG] Moving from ref0311067.10e3 to ref0311067.10e5 (p=1) 2017-11-14 09:45:28,509 [DEBUG] contig 2017-11-14 09:45:28,509 [DEBUG] who? ref0311067.10e5 ref0311067.10e3 2017-11-14 09:45:28,509 [DEBUG] Grabbing contig between nodes ref0311067.10e5 & ref0311067.10e3 - [trim 0, 0] 2017-11-14 09:45:28,509 [DEBUG] contig 30644 to 30992 2017-11-14 09:45:28,509 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,510 [DEBUG] Moving from ref0311067.10e5 to ref0311067.9e3 (p=1) 2017-11-14 09:45:28,510 [DEBUG] unimproved gap 2017-11-14 09:45:28,510 [DEBUG] Moving from ref0311067.9e3 to ref0311067.9e5 (p=1) 2017-11-14 09:45:28,510 [DEBUG] contig 2017-11-14 09:45:28,510 [DEBUG] who? ref0311067.9e5 ref0311067.9e3 2017-11-14 09:45:28,510 [DEBUG] Grabbing contig between nodes ref0311067.9e5 & ref0311067.9e3 - [trim 0, 0] 2017-11-14 09:45:28,510 [DEBUG] contig 28634 to 30341 2017-11-14 09:45:28,510 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,510 [DEBUG] Moving from ref0311067.9e5 to ref0311067.8e3 (p=1) 2017-11-14 09:45:28,510 [DEBUG] unimproved gap 2017-11-14 09:45:28,510 [DEBUG] Moving from ref0311067.8e3 to ref0311067.8e5 (p=1) 2017-11-14 09:45:28,510 [DEBUG] contig 2017-11-14 09:45:28,510 [DEBUG] who? ref0311067.8e5 ref0311067.8e3 2017-11-14 09:45:28,510 [DEBUG] Grabbing contig between nodes ref0311067.8e5 & ref0311067.8e3 - [trim 0, 0] 2017-11-14 09:45:28,511 [DEBUG] contig 28168 to 28507 2017-11-14 09:45:28,511 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,511 [DEBUG] Moving from ref0311067.8e5 to ref0311067.7e3 (p=1) 2017-11-14 09:45:28,511 [DEBUG] unimproved gap 2017-11-14 09:45:28,511 [DEBUG] Moving from ref0311067.7e3 to ref0311067.7e5 (p=1) 2017-11-14 09:45:28,511 [DEBUG] contig 2017-11-14 09:45:28,511 [DEBUG] who? ref0311067.7e5 ref0311067.7e3 2017-11-14 09:45:28,511 [DEBUG] Grabbing contig between nodes ref0311067.7e5 & ref0311067.7e3 - [trim 0, 0] 2017-11-14 09:45:28,511 [DEBUG] contig 27445 to 28095 2017-11-14 09:45:28,511 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,511 [DEBUG] Moving from ref0311067.7e5 to ref0311067.6e3 (p=1) 2017-11-14 09:45:28,511 [DEBUG] unimproved gap 2017-11-14 09:45:28,511 [DEBUG] Moving from ref0311067.6e3 to ref0311067.6e5 (p=1) 2017-11-14 09:45:28,512 [DEBUG] contig 2017-11-14 09:45:28,512 [DEBUG] who? ref0311067.6e5 ref0311067.6e3 2017-11-14 09:45:28,512 [DEBUG] Grabbing contig between nodes ref0311067.6e5 & ref0311067.6e3 - [trim 0, 0] 2017-11-14 09:45:28,512 [DEBUG] contig 25592 to 27263 2017-11-14 09:45:28,512 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,512 [DEBUG] Moving from ref0311067.6e5 to ref0311067.5e3 (p=1) 2017-11-14 09:45:28,512 [DEBUG] unimproved gap 2017-11-14 09:45:28,512 [DEBUG] Moving from ref0311067.5e3 to ref0311067.5e5 (p=1) 2017-11-14 09:45:28,512 [DEBUG] contig 2017-11-14 09:45:28,512 [DEBUG] who? ref0311067.5e5 ref0311067.5e3 2017-11-14 09:45:28,512 [DEBUG] Grabbing contig between nodes ref0311067.5e5 & ref0311067.5e3 - [trim 0, 0] 2017-11-14 09:45:28,512 [DEBUG] contig 19906 to 25378 2017-11-14 09:45:28,512 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,513 [DEBUG] Moving from ref0311067.5e5 to ref0311067.4e3 (p=1) 2017-11-14 09:45:28,513 [DEBUG] unimproved gap 2017-11-14 09:45:28,513 [DEBUG] Moving from ref0311067.4e3 to ref0311067.4e5 (p=1) 2017-11-14 09:45:28,513 [DEBUG] contig 2017-11-14 09:45:28,513 [DEBUG] who? ref0311067.4e5 ref0311067.4e3 2017-11-14 09:45:28,513 [DEBUG] Grabbing contig between nodes ref0311067.4e5 & ref0311067.4e3 - [trim 0, 0] 2017-11-14 09:45:28,513 [DEBUG] contig 19173 to 19783 2017-11-14 09:45:28,513 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,513 [DEBUG] Moving from ref0311067.4e5 to ref0311067.3e3 (p=1) 2017-11-14 09:45:28,513 [DEBUG] unimproved gap 2017-11-14 09:45:28,513 [DEBUG] Moving from ref0311067.3e3 to ref0311067.3e5 (p=1) 2017-11-14 09:45:28,513 [DEBUG] contig 2017-11-14 09:45:28,513 [DEBUG] who? ref0311067.3e5 ref0311067.3e3 2017-11-14 09:45:28,513 [DEBUG] Grabbing contig between nodes ref0311067.3e5 & ref0311067.3e3 - [trim 0, 0] 2017-11-14 09:45:28,514 [DEBUG] contig 13605 to 18701 2017-11-14 09:45:28,514 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,514 [DEBUG] Moving from ref0311067.3e5 to ref0311067.2e3 (p=1) 2017-11-14 09:45:28,514 [DEBUG] unimproved gap 2017-11-14 09:45:28,514 [DEBUG] Moving from ref0311067.2e3 to ref0311067.2e5 (p=1) 2017-11-14 09:45:28,514 [DEBUG] contig 2017-11-14 09:45:28,514 [DEBUG] who? ref0311067.2e5 ref0311067.2e3 2017-11-14 09:45:28,514 [DEBUG] Grabbing contig between nodes ref0311067.2e5 & ref0311067.2e3 - [trim 0, 0] 2017-11-14 09:45:28,514 [DEBUG] contig 13407 to 13545 2017-11-14 09:45:28,514 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,514 [DEBUG] Moving from ref0311067.2e5 to ref0311067.1e3 (p=1) 2017-11-14 09:45:28,514 [DEBUG] unimproved gap 2017-11-14 09:45:28,514 [DEBUG] Moving from ref0311067.1e3 to ref0311067.1e5 (p=1) 2017-11-14 09:45:28,515 [DEBUG] contig 2017-11-14 09:45:28,515 [DEBUG] who? ref0311067.1e5 ref0311067.1e3 2017-11-14 09:45:28,515 [DEBUG] Grabbing contig between nodes ref0311067.1e5 & ref0311067.1e3 - [trim 0, 0] 2017-11-14 09:45:28,515 [DEBUG] contig 11891 to 13304 2017-11-14 09:45:28,515 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,515 [DEBUG] Moving from ref0311067.1e5 to ref0311067.0e3 (p=1) 2017-11-14 09:45:28,515 [DEBUG] unimproved gap 2017-11-14 09:45:28,515 [DEBUG] Moving from ref0311067.0e3 to ref0311067e5 (p=1) 2017-11-14 09:45:28,515 [DEBUG] contig 2017-11-14 09:45:28,515 [DEBUG] who? ref0311067e5 ref0311067.0e3 2017-11-14 09:45:28,515 [DEBUG] Grabbing contig between nodes ref0311067e5 & ref0311067.0e3 - [trim 0, 0] 2017-11-14 09:45:28,515 [DEBUG] contig 0 to 11782 2017-11-14 09:45:28,515 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,516 [DEBUG] FirstFlipping 80 2017-11-14 09:45:28,516 [DEBUG] Contig 81 2017-11-14 09:45:28,518 [DEBUG] Moving from ref0723111e5 to ref0723111.0e3 (p=1) 2017-11-14 09:45:28,518 [DEBUG] contig 2017-11-14 09:45:28,518 [DEBUG] who? ref0723111e5 ref0723111.0e3 2017-11-14 09:45:28,518 [DEBUG] Grabbing contig between nodes ref0723111e5 & ref0723111.0e3 - [trim 0, 0] 2017-11-14 09:45:28,518 [DEBUG] contig 0 to 2789 2017-11-14 09:45:28,518 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,518 [DEBUG] Moving from ref0723111.0e3 to ref0723111.1e5 (p=1) 2017-11-14 09:45:28,519 [DEBUG] unimproved gap 2017-11-14 09:45:28,519 [DEBUG] Moving from ref0723111.1e5 to ref0723111.1e3 (p=1) 2017-11-14 09:45:28,519 [DEBUG] contig 2017-11-14 09:45:28,519 [DEBUG] who? ref0723111.1e5 ref0723111.1e3 2017-11-14 09:45:28,519 [DEBUG] Grabbing contig between nodes ref0723111.1e5 & ref0723111.1e3 - [trim 0, 0] 2017-11-14 09:45:28,519 [DEBUG] contig 3198 to 7445 2017-11-14 09:45:28,519 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,519 [DEBUG] Moving from ref0723111.1e3 to ref0723111.2e5 (p=1) 2017-11-14 09:45:28,519 [DEBUG] unimproved gap 2017-11-14 09:45:28,519 [DEBUG] Moving from ref0723111.2e5 to ref0723111.2e3 (p=1) 2017-11-14 09:45:28,519 [DEBUG] contig 2017-11-14 09:45:28,519 [DEBUG] who? ref0723111.2e5 ref0723111.2e3 2017-11-14 09:45:28,519 [DEBUG] Grabbing contig between nodes ref0723111.2e5 & ref0723111.2e3 - [trim 0, 0] 2017-11-14 09:45:28,520 [DEBUG] contig 8003 to 9176 2017-11-14 09:45:28,520 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,520 [DEBUG] Moving from ref0723111.2e3 to ref0723111.3e5 (p=1) 2017-11-14 09:45:28,520 [DEBUG] unimproved gap 2017-11-14 09:45:28,520 [DEBUG] Moving from ref0723111.3e5 to ref0723111.3e3 (p=1) 2017-11-14 09:45:28,520 [DEBUG] contig 2017-11-14 09:45:28,520 [DEBUG] who? ref0723111.3e5 ref0723111.3e3 2017-11-14 09:45:28,520 [DEBUG] Grabbing contig between nodes ref0723111.3e5 & ref0723111.3e3 - [trim 0, 0] 2017-11-14 09:45:28,520 [DEBUG] contig 9321 to 10539 2017-11-14 09:45:28,520 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,520 [DEBUG] Moving from ref0723111.3e3 to ref0723111.4e5 (p=1) 2017-11-14 09:45:28,520 [DEBUG] unimproved gap 2017-11-14 09:45:28,520 [DEBUG] Moving from ref0723111.4e5 to ref0723111.4e3 (p=1) 2017-11-14 09:45:28,521 [DEBUG] contig 2017-11-14 09:45:28,521 [DEBUG] who? ref0723111.4e5 ref0723111.4e3 2017-11-14 09:45:28,521 [DEBUG] Grabbing contig between nodes ref0723111.4e5 & ref0723111.4e3 - [trim 0, 0] 2017-11-14 09:45:28,521 [DEBUG] contig 10639 to 14251 2017-11-14 09:45:28,521 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,521 [DEBUG] Moving from ref0723111.4e3 to ref0723111.5e5 (p=1) 2017-11-14 09:45:28,521 [DEBUG] unimproved gap 2017-11-14 09:45:28,521 [DEBUG] Moving from ref0723111.5e5 to ref0723111.5e3 (p=1) 2017-11-14 09:45:28,521 [DEBUG] contig 2017-11-14 09:45:28,521 [DEBUG] who? ref0723111.5e5 ref0723111.5e3 2017-11-14 09:45:28,521 [DEBUG] Grabbing contig between nodes ref0723111.5e5 & ref0723111.5e3 - [trim 0, 0] 2017-11-14 09:45:28,521 [DEBUG] contig 14360 to 16390 2017-11-14 09:45:28,521 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,521 [DEBUG] Moving from ref0723111.5e3 to ref0723111.6e5 (p=1) 2017-11-14 09:45:28,522 [DEBUG] unimproved gap 2017-11-14 09:45:28,522 [DEBUG] Moving from ref0723111.6e5 to ref0723111.6e3 (p=1) 2017-11-14 09:45:28,522 [DEBUG] contig 2017-11-14 09:45:28,522 [DEBUG] who? ref0723111.6e5 ref0723111.6e3 2017-11-14 09:45:28,522 [DEBUG] Grabbing contig between nodes ref0723111.6e5 & ref0723111.6e3 - [trim 0, 0] 2017-11-14 09:45:28,522 [DEBUG] contig 16484 to 17109 2017-11-14 09:45:28,522 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,522 [DEBUG] Moving from ref0723111.6e3 to ref0723111.7e5 (p=1) 2017-11-14 09:45:28,522 [DEBUG] unimproved gap 2017-11-14 09:45:28,522 [DEBUG] Moving from ref0723111.7e5 to ref0723111.7e3 (p=1) 2017-11-14 09:45:28,522 [DEBUG] contig 2017-11-14 09:45:28,522 [DEBUG] who? ref0723111.7e5 ref0723111.7e3 2017-11-14 09:45:28,522 [DEBUG] Grabbing contig between nodes ref0723111.7e5 & ref0723111.7e3 - [trim 0, 0] 2017-11-14 09:45:28,523 [DEBUG] contig 17497 to 17732 2017-11-14 09:45:28,523 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,523 [DEBUG] Moving from ref0723111.7e3 to ref0723111.8e5 (p=1) 2017-11-14 09:45:28,523 [DEBUG] unimproved gap 2017-11-14 09:45:28,523 [DEBUG] Moving from ref0723111.8e5 to ref0723111.8e3 (p=1) 2017-11-14 09:45:28,523 [DEBUG] contig 2017-11-14 09:45:28,523 [DEBUG] who? ref0723111.8e5 ref0723111.8e3 2017-11-14 09:45:28,523 [DEBUG] Grabbing contig between nodes ref0723111.8e5 & ref0723111.8e3 - [trim 0, 0] 2017-11-14 09:45:28,523 [DEBUG] contig 18204 to 22585 2017-11-14 09:45:28,523 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,523 [DEBUG] Moving from ref0723111.8e3 to ref0723111.9e5 (p=1) 2017-11-14 09:45:28,523 [DEBUG] unimproved gap 2017-11-14 09:45:28,524 [DEBUG] Moving from ref0723111.9e5 to ref0723111.9e3 (p=1) 2017-11-14 09:45:28,524 [DEBUG] contig 2017-11-14 09:45:28,524 [DEBUG] who? ref0723111.9e5 ref0723111.9e3 2017-11-14 09:45:28,524 [DEBUG] Grabbing contig between nodes ref0723111.9e5 & ref0723111.9e3 - [trim 0, 0] 2017-11-14 09:45:28,524 [DEBUG] contig 22886 to 23598 2017-11-14 09:45:28,524 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,524 [DEBUG] Moving from ref0723111.9e3 to ref0723111.10e5 (p=1) 2017-11-14 09:45:28,524 [DEBUG] unimproved gap 2017-11-14 09:45:28,524 [DEBUG] Moving from ref0723111.10e5 to ref0723111.10e3 (p=1) 2017-11-14 09:45:28,524 [DEBUG] contig 2017-11-14 09:45:28,524 [DEBUG] who? ref0723111.10e5 ref0723111.10e3 2017-11-14 09:45:28,524 [DEBUG] Grabbing contig between nodes ref0723111.10e5 & ref0723111.10e3 - [trim 0, 0] 2017-11-14 09:45:28,524 [DEBUG] contig 23671 to 24274 2017-11-14 09:45:28,525 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,525 [DEBUG] Moving from ref0723111.10e3 to ref0723111.11e5 (p=1) 2017-11-14 09:45:28,525 [DEBUG] unimproved gap 2017-11-14 09:45:28,525 [DEBUG] Moving from ref0723111.11e5 to ref0723111.11e3 (p=1) 2017-11-14 09:45:28,525 [DEBUG] contig 2017-11-14 09:45:28,525 [DEBUG] who? ref0723111.11e5 ref0723111.11e3 2017-11-14 09:45:28,525 [DEBUG] Grabbing contig between nodes ref0723111.11e5 & ref0723111.11e3 - [trim 0, 0] 2017-11-14 09:45:28,525 [DEBUG] contig 24531 to 24748 2017-11-14 09:45:28,525 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,525 [DEBUG] Moving from ref0723111.11e3 to ref0723111.12e5 (p=1) 2017-11-14 09:45:28,525 [DEBUG] unimproved gap 2017-11-14 09:45:28,525 [DEBUG] Moving from ref0723111.12e5 to ref0723111.12e3 (p=1) 2017-11-14 09:45:28,525 [DEBUG] contig 2017-11-14 09:45:28,526 [DEBUG] who? ref0723111.12e5 ref0723111.12e3 2017-11-14 09:45:28,526 [DEBUG] Grabbing contig between nodes ref0723111.12e5 & ref0723111.12e3 - [trim 0, 0] 2017-11-14 09:45:28,526 [DEBUG] contig 25024 to 26267 2017-11-14 09:45:28,526 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,526 [DEBUG] Moving from ref0723111.12e3 to ref0723111.13e5 (p=1) 2017-11-14 09:45:28,526 [DEBUG] unimproved gap 2017-11-14 09:45:28,526 [DEBUG] Moving from ref0723111.13e5 to ref0723111.13e3 (p=1) 2017-11-14 09:45:28,526 [DEBUG] contig 2017-11-14 09:45:28,526 [DEBUG] who? ref0723111.13e5 ref0723111.13e3 2017-11-14 09:45:28,526 [DEBUG] Grabbing contig between nodes ref0723111.13e5 & ref0723111.13e3 - [trim 0, 0] 2017-11-14 09:45:28,526 [DEBUG] contig 26292 to 26361 2017-11-14 09:45:28,526 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,526 [DEBUG] Moving from ref0723111.13e3 to ref0723111.14e5 (p=1) 2017-11-14 09:45:28,526 [DEBUG] unimproved gap 2017-11-14 09:45:28,527 [DEBUG] Moving from ref0723111.14e5 to ref0723111.14e3 (p=1) 2017-11-14 09:45:28,527 [DEBUG] contig 2017-11-14 09:45:28,527 [DEBUG] who? ref0723111.14e5 ref0723111.14e3 2017-11-14 09:45:28,527 [DEBUG] Grabbing contig between nodes ref0723111.14e5 & ref0723111.14e3 - [trim 0, 0] 2017-11-14 09:45:28,527 [DEBUG] contig 26569 to 26779 2017-11-14 09:45:28,527 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,527 [DEBUG] Moving from ref0723111.14e3 to ref0723111.15e5 (p=1) 2017-11-14 09:45:28,527 [DEBUG] unimproved gap 2017-11-14 09:45:28,527 [DEBUG] Moving from ref0723111.15e5 to ref0723111.15e3 (p=1) 2017-11-14 09:45:28,527 [DEBUG] contig 2017-11-14 09:45:28,527 [DEBUG] who? ref0723111.15e5 ref0723111.15e3 2017-11-14 09:45:28,527 [DEBUG] Grabbing contig between nodes ref0723111.15e5 & ref0723111.15e3 - [trim 0, 0] 2017-11-14 09:45:28,527 [DEBUG] contig 27030 to 27706 2017-11-14 09:45:28,528 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,528 [DEBUG] Moving from ref0723111.15e3 to ref0723111.16e5 (p=1) 2017-11-14 09:45:28,528 [DEBUG] unimproved gap 2017-11-14 09:45:28,528 [DEBUG] Moving from ref0723111.16e5 to ref0723111.16e3 (p=1) 2017-11-14 09:45:28,528 [DEBUG] contig 2017-11-14 09:45:28,528 [DEBUG] who? ref0723111.16e5 ref0723111.16e3 2017-11-14 09:45:28,528 [DEBUG] Grabbing contig between nodes ref0723111.16e5 & ref0723111.16e3 - [trim 0, 0] 2017-11-14 09:45:28,528 [DEBUG] contig 27781 to 27983 2017-11-14 09:45:28,528 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,528 [DEBUG] Moving from ref0723111.16e3 to ref0723111.17e5 (p=1) 2017-11-14 09:45:28,528 [DEBUG] unimproved gap 2017-11-14 09:45:28,528 [DEBUG] Moving from ref0723111.17e5 to ref0723111e3 (p=1) 2017-11-14 09:45:28,528 [DEBUG] contig 2017-11-14 09:45:28,529 [DEBUG] who? ref0723111.17e5 ref0723111e3 2017-11-14 09:45:28,529 [DEBUG] Grabbing contig between nodes ref0723111.17e5 & ref0723111e3 - [trim 0, 0] 2017-11-14 09:45:28,529 [DEBUG] contig 28049 to 29547 2017-11-14 09:45:28,529 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,529 [DEBUG] Contig 82 2017-11-14 09:45:28,531 [DEBUG] Moving from ref0457004e5 to ref0457004.0e3 (p=1) 2017-11-14 09:45:28,531 [DEBUG] contig 2017-11-14 09:45:28,531 [DEBUG] who? ref0457004e5 ref0457004.0e3 2017-11-14 09:45:28,531 [DEBUG] Grabbing contig between nodes ref0457004e5 & ref0457004.0e3 - [trim 0, 0] 2017-11-14 09:45:28,531 [DEBUG] contig 0 to 80 2017-11-14 09:45:28,531 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,531 [DEBUG] Moving from ref0457004.0e3 to ref0457004.1e5 (p=1) 2017-11-14 09:45:28,531 [DEBUG] unimproved gap 2017-11-14 09:45:28,532 [DEBUG] Moving from ref0457004.1e5 to ref0457004.1e3 (p=1) 2017-11-14 09:45:28,532 [DEBUG] contig 2017-11-14 09:45:28,532 [DEBUG] who? ref0457004.1e5 ref0457004.1e3 2017-11-14 09:45:28,532 [DEBUG] Grabbing contig between nodes ref0457004.1e5 & ref0457004.1e3 - [trim 0, 0] 2017-11-14 09:45:28,532 [DEBUG] contig 391 to 1564 2017-11-14 09:45:28,532 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,532 [DEBUG] Moving from ref0457004.1e3 to ref0457004.2e5 (p=1) 2017-11-14 09:45:28,532 [DEBUG] unimproved gap 2017-11-14 09:45:28,532 [DEBUG] Moving from ref0457004.2e5 to ref0457004.2e3 (p=1) 2017-11-14 09:45:28,532 [DEBUG] contig 2017-11-14 09:45:28,532 [DEBUG] who? ref0457004.2e5 ref0457004.2e3 2017-11-14 09:45:28,532 [DEBUG] Grabbing contig between nodes ref0457004.2e5 & ref0457004.2e3 - [trim 0, 0] 2017-11-14 09:45:28,532 [DEBUG] contig 1947 to 5691 2017-11-14 09:45:28,533 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,533 [DEBUG] Moving from ref0457004.2e3 to ref0457004.3e5 (p=1) 2017-11-14 09:45:28,533 [DEBUG] unimproved gap 2017-11-14 09:45:28,533 [DEBUG] Moving from ref0457004.3e5 to ref0457004.3e3 (p=1) 2017-11-14 09:45:28,533 [DEBUG] contig 2017-11-14 09:45:28,533 [DEBUG] who? ref0457004.3e5 ref0457004.3e3 2017-11-14 09:45:28,533 [DEBUG] Grabbing contig between nodes ref0457004.3e5 & ref0457004.3e3 - [trim 0, 0] 2017-11-14 09:45:28,533 [DEBUG] contig 6310 to 6436 2017-11-14 09:45:28,533 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,533 [DEBUG] Moving from ref0457004.3e3 to ref0457004.4e5 (p=1) 2017-11-14 09:45:28,533 [DEBUG] unimproved gap 2017-11-14 09:45:28,533 [DEBUG] Moving from ref0457004.4e5 to ref0457004.4e3 (p=1) 2017-11-14 09:45:28,533 [DEBUG] contig 2017-11-14 09:45:28,533 [DEBUG] who? ref0457004.4e5 ref0457004.4e3 2017-11-14 09:45:28,534 [DEBUG] Grabbing contig between nodes ref0457004.4e5 & ref0457004.4e3 - [trim 0, 0] 2017-11-14 09:45:28,534 [DEBUG] contig 6707 to 6739 2017-11-14 09:45:28,534 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,534 [DEBUG] Moving from ref0457004.4e3 to ref0457004.5e5 (p=1) 2017-11-14 09:45:28,534 [DEBUG] unimproved gap 2017-11-14 09:45:28,534 [DEBUG] Moving from ref0457004.5e5 to ref0457004.5e3 (p=1) 2017-11-14 09:45:28,534 [DEBUG] contig 2017-11-14 09:45:28,534 [DEBUG] who? ref0457004.5e5 ref0457004.5e3 2017-11-14 09:45:28,534 [DEBUG] Grabbing contig between nodes ref0457004.5e5 & ref0457004.5e3 - [trim 0, 0] 2017-11-14 09:45:28,534 [DEBUG] contig 6887 to 7661 2017-11-14 09:45:28,534 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,534 [DEBUG] Moving from ref0457004.5e3 to ref0457004.6e5 (p=1) 2017-11-14 09:45:28,534 [DEBUG] unimproved gap 2017-11-14 09:45:28,535 [DEBUG] Moving from ref0457004.6e5 to ref0457004.6e3 (p=1) 2017-11-14 09:45:28,535 [DEBUG] contig 2017-11-14 09:45:28,535 [DEBUG] who? ref0457004.6e5 ref0457004.6e3 2017-11-14 09:45:28,535 [DEBUG] Grabbing contig between nodes ref0457004.6e5 & ref0457004.6e3 - [trim 0, 0] 2017-11-14 09:45:28,535 [DEBUG] contig 7814 to 9263 2017-11-14 09:45:28,535 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,535 [DEBUG] Moving from ref0457004.6e3 to ref0457004.7e5 (p=1) 2017-11-14 09:45:28,535 [DEBUG] unimproved gap 2017-11-14 09:45:28,535 [DEBUG] Moving from ref0457004.7e5 to ref0457004.7e3 (p=1) 2017-11-14 09:45:28,535 [DEBUG] contig 2017-11-14 09:45:28,535 [DEBUG] who? ref0457004.7e5 ref0457004.7e3 2017-11-14 09:45:28,535 [DEBUG] Grabbing contig between nodes ref0457004.7e5 & ref0457004.7e3 - [trim 0, 0] 2017-11-14 09:45:28,535 [DEBUG] contig 9542 to 10452 2017-11-14 09:45:28,535 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,536 [DEBUG] Moving from ref0457004.7e3 to ref0457004.8e5 (p=1) 2017-11-14 09:45:28,536 [DEBUG] unimproved gap 2017-11-14 09:45:28,536 [DEBUG] Moving from ref0457004.8e5 to ref0457004.8e3 (p=1) 2017-11-14 09:45:28,536 [DEBUG] contig 2017-11-14 09:45:28,536 [DEBUG] who? ref0457004.8e5 ref0457004.8e3 2017-11-14 09:45:28,536 [DEBUG] Grabbing contig between nodes ref0457004.8e5 & ref0457004.8e3 - [trim 0, 0] 2017-11-14 09:45:28,536 [DEBUG] contig 10733 to 11259 2017-11-14 09:45:28,536 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,536 [DEBUG] Moving from ref0457004.8e3 to ref0457004.9e5 (p=1) 2017-11-14 09:45:28,536 [DEBUG] unimproved gap 2017-11-14 09:45:28,536 [DEBUG] Moving from ref0457004.9e5 to ref0457004.9e3 (p=1) 2017-11-14 09:45:28,536 [DEBUG] contig 2017-11-14 09:45:28,537 [DEBUG] who? ref0457004.9e5 ref0457004.9e3 2017-11-14 09:45:28,537 [DEBUG] Grabbing contig between nodes ref0457004.9e5 & ref0457004.9e3 - [trim 0, 0] 2017-11-14 09:45:28,537 [DEBUG] contig 11450 to 11759 2017-11-14 09:45:28,537 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,537 [DEBUG] Moving from ref0457004.9e3 to ref0457004.10e5 (p=1) 2017-11-14 09:45:28,537 [DEBUG] unimproved gap 2017-11-14 09:45:28,537 [DEBUG] Moving from ref0457004.10e5 to ref0457004.10e3 (p=1) 2017-11-14 09:45:28,537 [DEBUG] contig 2017-11-14 09:45:28,537 [DEBUG] who? ref0457004.10e5 ref0457004.10e3 2017-11-14 09:45:28,537 [DEBUG] Grabbing contig between nodes ref0457004.10e5 & ref0457004.10e3 - [trim 0, 0] 2017-11-14 09:45:28,537 [DEBUG] contig 12056 to 14366 2017-11-14 09:45:28,537 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,537 [DEBUG] Moving from ref0457004.10e3 to ref0457004.11e5 (p=1) 2017-11-14 09:45:28,538 [DEBUG] unimproved gap 2017-11-14 09:45:28,538 [DEBUG] Moving from ref0457004.11e5 to ref0457004.11e3 (p=1) 2017-11-14 09:45:28,538 [DEBUG] contig 2017-11-14 09:45:28,538 [DEBUG] who? ref0457004.11e5 ref0457004.11e3 2017-11-14 09:45:28,538 [DEBUG] Grabbing contig between nodes ref0457004.11e5 & ref0457004.11e3 - [trim 0, 0] 2017-11-14 09:45:28,538 [DEBUG] contig 14425 to 15842 2017-11-14 09:45:28,538 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,538 [DEBUG] Moving from ref0457004.11e3 to ref0457004.12e5 (p=1) 2017-11-14 09:45:28,538 [DEBUG] unimproved gap 2017-11-14 09:45:28,538 [DEBUG] Moving from ref0457004.12e5 to ref0457004.12e3 (p=1) 2017-11-14 09:45:28,538 [DEBUG] contig 2017-11-14 09:45:28,538 [DEBUG] who? ref0457004.12e5 ref0457004.12e3 2017-11-14 09:45:28,538 [DEBUG] Grabbing contig between nodes ref0457004.12e5 & ref0457004.12e3 - [trim 0, 0] 2017-11-14 09:45:28,538 [DEBUG] contig 16024 to 16159 2017-11-14 09:45:28,539 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,539 [DEBUG] Moving from ref0457004.12e3 to ref0457004.13e5 (p=1) 2017-11-14 09:45:28,539 [DEBUG] unimproved gap 2017-11-14 09:45:28,539 [DEBUG] Moving from ref0457004.13e5 to ref0457004.13e3 (p=1) 2017-11-14 09:45:28,539 [DEBUG] contig 2017-11-14 09:45:28,539 [DEBUG] who? ref0457004.13e5 ref0457004.13e3 2017-11-14 09:45:28,539 [DEBUG] Grabbing contig between nodes ref0457004.13e5 & ref0457004.13e3 - [trim 0, 0] 2017-11-14 09:45:28,539 [DEBUG] contig 16412 to 16771 2017-11-14 09:45:28,539 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,539 [DEBUG] Moving from ref0457004.13e3 to ref0457004.14e5 (p=1) 2017-11-14 09:45:28,539 [DEBUG] unimproved gap 2017-11-14 09:45:28,539 [DEBUG] Moving from ref0457004.14e5 to ref0457004.14e3 (p=1) 2017-11-14 09:45:28,539 [DEBUG] contig 2017-11-14 09:45:28,540 [DEBUG] who? ref0457004.14e5 ref0457004.14e3 2017-11-14 09:45:28,540 [DEBUG] Grabbing contig between nodes ref0457004.14e5 & ref0457004.14e3 - [trim 0, 0] 2017-11-14 09:45:28,540 [DEBUG] contig 16913 to 17774 2017-11-14 09:45:28,540 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,540 [DEBUG] Moving from ref0457004.14e3 to ref0457004.15e5 (p=1) 2017-11-14 09:45:28,540 [DEBUG] unimproved gap 2017-11-14 09:45:28,540 [DEBUG] Moving from ref0457004.15e5 to ref0457004.15e3 (p=1) 2017-11-14 09:45:28,540 [DEBUG] contig 2017-11-14 09:45:28,540 [DEBUG] who? ref0457004.15e5 ref0457004.15e3 2017-11-14 09:45:28,540 [DEBUG] Grabbing contig between nodes ref0457004.15e5 & ref0457004.15e3 - [trim 0, 0] 2017-11-14 09:45:28,540 [DEBUG] contig 17891 to 24478 2017-11-14 09:45:28,540 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,540 [DEBUG] Moving from ref0457004.15e3 to ref0457004.16e5 (p=1) 2017-11-14 09:45:28,541 [DEBUG] unimproved gap 2017-11-14 09:45:28,541 [DEBUG] Moving from ref0457004.16e5 to ref0457004.16e3 (p=1) 2017-11-14 09:45:28,541 [DEBUG] contig 2017-11-14 09:45:28,541 [DEBUG] who? ref0457004.16e5 ref0457004.16e3 2017-11-14 09:45:28,541 [DEBUG] Grabbing contig between nodes ref0457004.16e5 & ref0457004.16e3 - [trim 0, 0] 2017-11-14 09:45:28,541 [DEBUG] contig 24635 to 28620 2017-11-14 09:45:28,541 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,541 [DEBUG] Moving from ref0457004.16e3 to ref0457004.17e5 (p=1) 2017-11-14 09:45:28,541 [DEBUG] unimproved gap 2017-11-14 09:45:28,541 [DEBUG] Moving from ref0457004.17e5 to ref0457004e3 (p=1) 2017-11-14 09:45:28,541 [DEBUG] contig 2017-11-14 09:45:28,541 [DEBUG] who? ref0457004.17e5 ref0457004e3 2017-11-14 09:45:28,541 [DEBUG] Grabbing contig between nodes ref0457004.17e5 & ref0457004e3 - [trim 0, 0] 2017-11-14 09:45:28,542 [DEBUG] contig 28843 to 33282 2017-11-14 09:45:28,542 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,542 [DEBUG] Contig 83 2017-11-14 09:45:28,544 [DEBUG] Moving from ref0570308e3 to ref0570308.17e5 (p=1) 2017-11-14 09:45:28,544 [DEBUG] contig 2017-11-14 09:45:28,544 [DEBUG] who? ref0570308.17e5 ref0570308e3 2017-11-14 09:45:28,544 [DEBUG] Grabbing contig between nodes ref0570308.17e5 & ref0570308e3 - [trim 0, 0] 2017-11-14 09:45:28,544 [DEBUG] contig 8297 to 8373 2017-11-14 09:45:28,544 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,544 [DEBUG] Moving from ref0570308.17e5 to ref0570308.16e3 (p=1) 2017-11-14 09:45:28,544 [DEBUG] unimproved gap 2017-11-14 09:45:28,544 [DEBUG] Moving from ref0570308.16e3 to ref0570308.16e5 (p=1) 2017-11-14 09:45:28,545 [DEBUG] contig 2017-11-14 09:45:28,545 [DEBUG] who? ref0570308.16e5 ref0570308.16e3 2017-11-14 09:45:28,545 [DEBUG] Grabbing contig between nodes ref0570308.16e5 & ref0570308.16e3 - [trim 0, 0] 2017-11-14 09:45:28,545 [DEBUG] contig 7666 to 8028 2017-11-14 09:45:28,545 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,545 [DEBUG] Moving from ref0570308.16e5 to ref0570308.15e3 (p=1) 2017-11-14 09:45:28,545 [DEBUG] unimproved gap 2017-11-14 09:45:28,545 [DEBUG] Moving from ref0570308.15e3 to ref0570308.15e5 (p=1) 2017-11-14 09:45:28,545 [DEBUG] contig 2017-11-14 09:45:28,545 [DEBUG] who? ref0570308.15e5 ref0570308.15e3 2017-11-14 09:45:28,545 [DEBUG] Grabbing contig between nodes ref0570308.15e5 & ref0570308.15e3 - [trim 0, 0] 2017-11-14 09:45:28,545 [DEBUG] contig 7014 to 7225 2017-11-14 09:45:28,545 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,545 [DEBUG] Moving from ref0570308.15e5 to ref0570308.14e3 (p=1) 2017-11-14 09:45:28,546 [DEBUG] unimproved gap 2017-11-14 09:45:28,546 [DEBUG] Moving from ref0570308.14e3 to ref0570308.14e5 (p=1) 2017-11-14 09:45:28,546 [DEBUG] contig 2017-11-14 09:45:28,546 [DEBUG] who? ref0570308.14e5 ref0570308.14e3 2017-11-14 09:45:28,546 [DEBUG] Grabbing contig between nodes ref0570308.14e5 & ref0570308.14e3 - [trim 0, 0] 2017-11-14 09:45:28,546 [DEBUG] contig 6760 to 6794 2017-11-14 09:45:28,546 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,546 [DEBUG] Moving from ref0570308.14e5 to ref0570308.13e3 (p=1) 2017-11-14 09:45:28,546 [DEBUG] unimproved gap 2017-11-14 09:45:28,546 [DEBUG] Moving from ref0570308.13e3 to ref0570308.13e5 (p=1) 2017-11-14 09:45:28,546 [DEBUG] contig 2017-11-14 09:45:28,546 [DEBUG] who? ref0570308.13e5 ref0570308.13e3 2017-11-14 09:45:28,546 [DEBUG] Grabbing contig between nodes ref0570308.13e5 & ref0570308.13e3 - [trim 0, 0] 2017-11-14 09:45:28,547 [DEBUG] contig 6067 to 6455 2017-11-14 09:45:28,547 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,547 [DEBUG] Moving from ref0570308.13e5 to ref0570308.12e3 (p=1) 2017-11-14 09:45:28,547 [DEBUG] unimproved gap 2017-11-14 09:45:28,547 [DEBUG] Moving from ref0570308.12e3 to ref0570308.12e5 (p=1) 2017-11-14 09:45:28,547 [DEBUG] contig 2017-11-14 09:45:28,547 [DEBUG] who? ref0570308.12e5 ref0570308.12e3 2017-11-14 09:45:28,547 [DEBUG] Grabbing contig between nodes ref0570308.12e5 & ref0570308.12e3 - [trim 0, 0] 2017-11-14 09:45:28,547 [DEBUG] contig 5668 to 5740 2017-11-14 09:45:28,547 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,547 [DEBUG] Moving from ref0570308.12e5 to ref0570308.11e3 (p=1) 2017-11-14 09:45:28,547 [DEBUG] unimproved gap 2017-11-14 09:45:28,547 [DEBUG] Moving from ref0570308.11e3 to ref0570308.11e5 (p=1) 2017-11-14 09:45:28,548 [DEBUG] contig 2017-11-14 09:45:28,548 [DEBUG] who? ref0570308.11e5 ref0570308.11e3 2017-11-14 09:45:28,548 [DEBUG] Grabbing contig between nodes ref0570308.11e5 & ref0570308.11e3 - [trim 0, 0] 2017-11-14 09:45:28,548 [DEBUG] contig 5264 to 5400 2017-11-14 09:45:28,548 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,548 [DEBUG] Moving from ref0570308.11e5 to ref0570308.10e3 (p=1) 2017-11-14 09:45:28,548 [DEBUG] unimproved gap 2017-11-14 09:45:28,548 [DEBUG] Moving from ref0570308.10e3 to ref0570308.10e5 (p=1) 2017-11-14 09:45:28,548 [DEBUG] contig 2017-11-14 09:45:28,548 [DEBUG] who? ref0570308.10e5 ref0570308.10e3 2017-11-14 09:45:28,548 [DEBUG] Grabbing contig between nodes ref0570308.10e5 & ref0570308.10e3 - [trim 0, 0] 2017-11-14 09:45:28,548 [DEBUG] contig 4906 to 4944 2017-11-14 09:45:28,548 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,548 [DEBUG] Moving from ref0570308.10e5 to ref0570308.9e3 (p=1) 2017-11-14 09:45:28,549 [DEBUG] unimproved gap 2017-11-14 09:45:28,549 [DEBUG] Moving from ref0570308.9e3 to ref0570308.9e5 (p=1) 2017-11-14 09:45:28,549 [DEBUG] contig 2017-11-14 09:45:28,549 [DEBUG] who? ref0570308.9e5 ref0570308.9e3 2017-11-14 09:45:28,549 [DEBUG] Grabbing contig between nodes ref0570308.9e5 & ref0570308.9e3 - [trim 0, 0] 2017-11-14 09:45:28,549 [DEBUG] contig 4472 to 4733 2017-11-14 09:45:28,549 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,549 [DEBUG] Moving from ref0570308.9e5 to ref0570308.8e3 (p=1) 2017-11-14 09:45:28,549 [DEBUG] unimproved gap 2017-11-14 09:45:28,549 [DEBUG] Moving from ref0570308.8e3 to ref0570308.8e5 (p=1) 2017-11-14 09:45:28,549 [DEBUG] contig 2017-11-14 09:45:28,549 [DEBUG] who? ref0570308.8e5 ref0570308.8e3 2017-11-14 09:45:28,549 [DEBUG] Grabbing contig between nodes ref0570308.8e5 & ref0570308.8e3 - [trim 0, 0] 2017-11-14 09:45:28,550 [DEBUG] contig 4089 to 4151 2017-11-14 09:45:28,550 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,550 [DEBUG] Moving from ref0570308.8e5 to ref0570308.7e3 (p=1) 2017-11-14 09:45:28,550 [DEBUG] unimproved gap 2017-11-14 09:45:28,550 [DEBUG] Moving from ref0570308.7e3 to ref0570308.7e5 (p=1) 2017-11-14 09:45:28,550 [DEBUG] contig 2017-11-14 09:45:28,550 [DEBUG] who? ref0570308.7e5 ref0570308.7e3 2017-11-14 09:45:28,550 [DEBUG] Grabbing contig between nodes ref0570308.7e5 & ref0570308.7e3 - [trim 0, 0] 2017-11-14 09:45:28,550 [DEBUG] contig 3520 to 3844 2017-11-14 09:45:28,550 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,550 [DEBUG] Moving from ref0570308.7e5 to ref0570308.6e3 (p=1) 2017-11-14 09:45:28,550 [DEBUG] unimproved gap 2017-11-14 09:45:28,550 [DEBUG] Moving from ref0570308.6e3 to ref0570308.6e5 (p=1) 2017-11-14 09:45:28,551 [DEBUG] contig 2017-11-14 09:45:28,551 [DEBUG] who? ref0570308.6e5 ref0570308.6e3 2017-11-14 09:45:28,551 [DEBUG] Grabbing contig between nodes ref0570308.6e5 & ref0570308.6e3 - [trim 0, 0] 2017-11-14 09:45:28,551 [DEBUG] contig 3008 to 3240 2017-11-14 09:45:28,551 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,551 [DEBUG] Moving from ref0570308.6e5 to ref0570308.5e3 (p=1) 2017-11-14 09:45:28,551 [DEBUG] unimproved gap 2017-11-14 09:45:28,551 [DEBUG] Moving from ref0570308.5e3 to ref0570308.5e5 (p=1) 2017-11-14 09:45:28,551 [DEBUG] contig 2017-11-14 09:45:28,551 [DEBUG] who? ref0570308.5e5 ref0570308.5e3 2017-11-14 09:45:28,551 [DEBUG] Grabbing contig between nodes ref0570308.5e5 & ref0570308.5e3 - [trim 0, 0] 2017-11-14 09:45:28,551 [DEBUG] contig 2638 to 2806 2017-11-14 09:45:28,551 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,552 [DEBUG] Moving from ref0570308.5e5 to ref0570308.4e3 (p=1) 2017-11-14 09:45:28,552 [DEBUG] unimproved gap 2017-11-14 09:45:28,552 [DEBUG] Moving from ref0570308.4e3 to ref0570308.4e5 (p=1) 2017-11-14 09:45:28,552 [DEBUG] contig 2017-11-14 09:45:28,552 [DEBUG] who? ref0570308.4e5 ref0570308.4e3 2017-11-14 09:45:28,552 [DEBUG] Grabbing contig between nodes ref0570308.4e5 & ref0570308.4e3 - [trim 0, 0] 2017-11-14 09:45:28,552 [DEBUG] contig 2401 to 2456 2017-11-14 09:45:28,552 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,552 [DEBUG] Moving from ref0570308.4e5 to ref0570308.3e3 (p=1) 2017-11-14 09:45:28,552 [DEBUG] unimproved gap 2017-11-14 09:45:28,552 [DEBUG] Moving from ref0570308.3e3 to ref0570308.3e5 (p=1) 2017-11-14 09:45:28,552 [DEBUG] contig 2017-11-14 09:45:28,552 [DEBUG] who? ref0570308.3e5 ref0570308.3e3 2017-11-14 09:45:28,553 [DEBUG] Grabbing contig between nodes ref0570308.3e5 & ref0570308.3e3 - [trim 0, 0] 2017-11-14 09:45:28,553 [DEBUG] contig 1658 to 2060 2017-11-14 09:45:28,553 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,553 [DEBUG] Moving from ref0570308.3e5 to ref0570308.2e3 (p=1) 2017-11-14 09:45:28,553 [DEBUG] unimproved gap 2017-11-14 09:45:28,553 [DEBUG] Moving from ref0570308.2e3 to ref0570308.2e5 (p=1) 2017-11-14 09:45:28,553 [DEBUG] contig 2017-11-14 09:45:28,553 [DEBUG] who? ref0570308.2e5 ref0570308.2e3 2017-11-14 09:45:28,553 [DEBUG] Grabbing contig between nodes ref0570308.2e5 & ref0570308.2e3 - [trim 0, 0] 2017-11-14 09:45:28,553 [DEBUG] contig 937 to 997 2017-11-14 09:45:28,553 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,553 [DEBUG] Moving from ref0570308.2e5 to ref0570308.1e3 (p=1) 2017-11-14 09:45:28,553 [DEBUG] unimproved gap 2017-11-14 09:45:28,554 [DEBUG] Moving from ref0570308.1e3 to ref0570308.1e5 (p=1) 2017-11-14 09:45:28,554 [DEBUG] contig 2017-11-14 09:45:28,554 [DEBUG] who? ref0570308.1e5 ref0570308.1e3 2017-11-14 09:45:28,554 [DEBUG] Grabbing contig between nodes ref0570308.1e5 & ref0570308.1e3 - [trim 0, 0] 2017-11-14 09:45:28,554 [DEBUG] contig 628 to 665 2017-11-14 09:45:28,554 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,554 [DEBUG] Moving from ref0570308.1e5 to ref0570308.0e3 (p=1) 2017-11-14 09:45:28,554 [DEBUG] unimproved gap 2017-11-14 09:45:28,554 [DEBUG] Moving from ref0570308.0e3 to ref0570308e5 (p=1) 2017-11-14 09:45:28,554 [DEBUG] contig 2017-11-14 09:45:28,554 [DEBUG] who? ref0570308e5 ref0570308.0e3 2017-11-14 09:45:28,554 [DEBUG] Grabbing contig between nodes ref0570308e5 & ref0570308.0e3 - [trim 0, 0] 2017-11-14 09:45:28,554 [DEBUG] contig 0 to 291 2017-11-14 09:45:28,554 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,555 [DEBUG] FirstFlipping 83 2017-11-14 09:45:28,555 [DEBUG] Contig 84 2017-11-14 09:45:28,557 [DEBUG] Moving from ref0162410e3 to ref0162410.17e5 (p=1) 2017-11-14 09:45:28,557 [DEBUG] contig 2017-11-14 09:45:28,557 [DEBUG] who? ref0162410.17e5 ref0162410e3 2017-11-14 09:45:28,557 [DEBUG] Grabbing contig between nodes ref0162410.17e5 & ref0162410e3 - [trim 0, 0] 2017-11-14 09:45:28,557 [DEBUG] contig 13124 to 13186 2017-11-14 09:45:28,557 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,557 [DEBUG] Moving from ref0162410.17e5 to ref0162410.16e3 (p=1) 2017-11-14 09:45:28,557 [DEBUG] unimproved gap 2017-11-14 09:45:28,557 [DEBUG] Moving from ref0162410.16e3 to ref0162410.16e5 (p=1) 2017-11-14 09:45:28,558 [DEBUG] contig 2017-11-14 09:45:28,558 [DEBUG] who? ref0162410.16e5 ref0162410.16e3 2017-11-14 09:45:28,558 [DEBUG] Grabbing contig between nodes ref0162410.16e5 & ref0162410.16e3 - [trim 0, 0] 2017-11-14 09:45:28,558 [DEBUG] contig 12472 to 12943 2017-11-14 09:45:28,558 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,558 [DEBUG] Moving from ref0162410.16e5 to ref0162410.15e3 (p=1) 2017-11-14 09:45:28,558 [DEBUG] unimproved gap 2017-11-14 09:45:28,558 [DEBUG] Moving from ref0162410.15e3 to ref0162410.15e5 (p=1) 2017-11-14 09:45:28,558 [DEBUG] contig 2017-11-14 09:45:28,558 [DEBUG] who? ref0162410.15e5 ref0162410.15e3 2017-11-14 09:45:28,558 [DEBUG] Grabbing contig between nodes ref0162410.15e5 & ref0162410.15e3 - [trim 0, 0] 2017-11-14 09:45:28,558 [DEBUG] contig 12018 to 12423 2017-11-14 09:45:28,558 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,559 [DEBUG] Moving from ref0162410.15e5 to ref0162410.14e3 (p=1) 2017-11-14 09:45:28,559 [DEBUG] unimproved gap 2017-11-14 09:45:28,559 [DEBUG] Moving from ref0162410.14e3 to ref0162410.14e5 (p=1) 2017-11-14 09:45:28,559 [DEBUG] contig 2017-11-14 09:45:28,559 [DEBUG] who? ref0162410.14e5 ref0162410.14e3 2017-11-14 09:45:28,559 [DEBUG] Grabbing contig between nodes ref0162410.14e5 & ref0162410.14e3 - [trim 0, 0] 2017-11-14 09:45:28,559 [DEBUG] contig 11318 to 11747 2017-11-14 09:45:28,559 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,559 [DEBUG] Moving from ref0162410.14e5 to ref0162410.13e3 (p=1) 2017-11-14 09:45:28,559 [DEBUG] unimproved gap 2017-11-14 09:45:28,559 [DEBUG] Moving from ref0162410.13e3 to ref0162410.13e5 (p=1) 2017-11-14 09:45:28,559 [DEBUG] contig 2017-11-14 09:45:28,559 [DEBUG] who? ref0162410.13e5 ref0162410.13e3 2017-11-14 09:45:28,560 [DEBUG] Grabbing contig between nodes ref0162410.13e5 & ref0162410.13e3 - [trim 0, 0] 2017-11-14 09:45:28,560 [DEBUG] contig 10351 to 11136 2017-11-14 09:45:28,560 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,560 [DEBUG] Moving from ref0162410.13e5 to ref0162410.12e3 (p=1) 2017-11-14 09:45:28,560 [DEBUG] unimproved gap 2017-11-14 09:45:28,560 [DEBUG] Moving from ref0162410.12e3 to ref0162410.12e5 (p=1) 2017-11-14 09:45:28,560 [DEBUG] contig 2017-11-14 09:45:28,560 [DEBUG] who? ref0162410.12e5 ref0162410.12e3 2017-11-14 09:45:28,560 [DEBUG] Grabbing contig between nodes ref0162410.12e5 & ref0162410.12e3 - [trim 0, 0] 2017-11-14 09:45:28,560 [DEBUG] contig 8966 to 10109 2017-11-14 09:45:28,560 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,560 [DEBUG] Moving from ref0162410.12e5 to ref0162410.11e3 (p=1) 2017-11-14 09:45:28,560 [DEBUG] unimproved gap 2017-11-14 09:45:28,561 [DEBUG] Moving from ref0162410.11e3 to ref0162410.11e5 (p=1) 2017-11-14 09:45:28,561 [DEBUG] contig 2017-11-14 09:45:28,561 [DEBUG] who? ref0162410.11e5 ref0162410.11e3 2017-11-14 09:45:28,561 [DEBUG] Grabbing contig between nodes ref0162410.11e5 & ref0162410.11e3 - [trim 0, 0] 2017-11-14 09:45:28,561 [DEBUG] contig 8042 to 8917 2017-11-14 09:45:28,561 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,561 [DEBUG] Moving from ref0162410.11e5 to ref0162410.10e3 (p=1) 2017-11-14 09:45:28,561 [DEBUG] unimproved gap 2017-11-14 09:45:28,561 [DEBUG] Moving from ref0162410.10e3 to ref0162410.10e5 (p=1) 2017-11-14 09:45:28,561 [DEBUG] contig 2017-11-14 09:45:28,561 [DEBUG] who? ref0162410.10e5 ref0162410.10e3 2017-11-14 09:45:28,561 [DEBUG] Grabbing contig between nodes ref0162410.10e5 & ref0162410.10e3 - [trim 0, 0] 2017-11-14 09:45:28,561 [DEBUG] contig 7843 to 7900 2017-11-14 09:45:28,561 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,562 [DEBUG] Moving from ref0162410.10e5 to ref0162410.9e3 (p=1) 2017-11-14 09:45:28,562 [DEBUG] unimproved gap 2017-11-14 09:45:28,562 [DEBUG] Moving from ref0162410.9e3 to ref0162410.9e5 (p=1) 2017-11-14 09:45:28,562 [DEBUG] contig 2017-11-14 09:45:28,562 [DEBUG] who? ref0162410.9e5 ref0162410.9e3 2017-11-14 09:45:28,562 [DEBUG] Grabbing contig between nodes ref0162410.9e5 & ref0162410.9e3 - [trim 0, 0] 2017-11-14 09:45:28,562 [DEBUG] contig 6350 to 7586 2017-11-14 09:45:28,562 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,562 [DEBUG] Moving from ref0162410.9e5 to ref0162410.8e3 (p=1) 2017-11-14 09:45:28,562 [DEBUG] unimproved gap 2017-11-14 09:45:28,562 [DEBUG] Moving from ref0162410.8e3 to ref0162410.8e5 (p=1) 2017-11-14 09:45:28,562 [DEBUG] contig 2017-11-14 09:45:28,562 [DEBUG] who? ref0162410.8e5 ref0162410.8e3 2017-11-14 09:45:28,563 [DEBUG] Grabbing contig between nodes ref0162410.8e5 & ref0162410.8e3 - [trim 0, 0] 2017-11-14 09:45:28,563 [DEBUG] contig 6231 to 6275 2017-11-14 09:45:28,563 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,563 [DEBUG] Moving from ref0162410.8e5 to ref0162410.7e3 (p=1) 2017-11-14 09:45:28,563 [DEBUG] unimproved gap 2017-11-14 09:45:28,563 [DEBUG] Moving from ref0162410.7e3 to ref0162410.7e5 (p=1) 2017-11-14 09:45:28,563 [DEBUG] contig 2017-11-14 09:45:28,563 [DEBUG] who? ref0162410.7e5 ref0162410.7e3 2017-11-14 09:45:28,563 [DEBUG] Grabbing contig between nodes ref0162410.7e5 & ref0162410.7e3 - [trim 0, 0] 2017-11-14 09:45:28,563 [DEBUG] contig 5870 to 5908 2017-11-14 09:45:28,563 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,563 [DEBUG] Moving from ref0162410.7e5 to ref0162410.6e3 (p=1) 2017-11-14 09:45:28,563 [DEBUG] unimproved gap 2017-11-14 09:45:28,564 [DEBUG] Moving from ref0162410.6e3 to ref0162410.6e5 (p=1) 2017-11-14 09:45:28,564 [DEBUG] contig 2017-11-14 09:45:28,564 [DEBUG] who? ref0162410.6e5 ref0162410.6e3 2017-11-14 09:45:28,564 [DEBUG] Grabbing contig between nodes ref0162410.6e5 & ref0162410.6e3 - [trim 0, 0] 2017-11-14 09:45:28,564 [DEBUG] contig 4645 to 5804 2017-11-14 09:45:28,564 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,564 [DEBUG] Moving from ref0162410.6e5 to ref0162410.5e3 (p=1) 2017-11-14 09:45:28,564 [DEBUG] unimproved gap 2017-11-14 09:45:28,564 [DEBUG] Moving from ref0162410.5e3 to ref0162410.5e5 (p=1) 2017-11-14 09:45:28,564 [DEBUG] contig 2017-11-14 09:45:28,564 [DEBUG] who? ref0162410.5e5 ref0162410.5e3 2017-11-14 09:45:28,564 [DEBUG] Grabbing contig between nodes ref0162410.5e5 & ref0162410.5e3 - [trim 0, 0] 2017-11-14 09:45:28,564 [DEBUG] contig 3862 to 4073 2017-11-14 09:45:28,565 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,565 [DEBUG] Moving from ref0162410.5e5 to ref0162410.4e3 (p=1) 2017-11-14 09:45:28,565 [DEBUG] unimproved gap 2017-11-14 09:45:28,565 [DEBUG] Moving from ref0162410.4e3 to ref0162410.4e5 (p=1) 2017-11-14 09:45:28,565 [DEBUG] contig 2017-11-14 09:45:28,565 [DEBUG] who? ref0162410.4e5 ref0162410.4e3 2017-11-14 09:45:28,565 [DEBUG] Grabbing contig between nodes ref0162410.4e5 & ref0162410.4e3 - [trim 0, 0] 2017-11-14 09:45:28,565 [DEBUG] contig 3521 to 3570 2017-11-14 09:45:28,565 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,565 [DEBUG] Moving from ref0162410.4e5 to ref0162410.3e3 (p=1) 2017-11-14 09:45:28,565 [DEBUG] unimproved gap 2017-11-14 09:45:28,565 [DEBUG] Moving from ref0162410.3e3 to ref0162410.3e5 (p=1) 2017-11-14 09:45:28,565 [DEBUG] contig 2017-11-14 09:45:28,566 [DEBUG] who? ref0162410.3e5 ref0162410.3e3 2017-11-14 09:45:28,566 [DEBUG] Grabbing contig between nodes ref0162410.3e5 & ref0162410.3e3 - [trim 0, 0] 2017-11-14 09:45:28,566 [DEBUG] contig 3282 to 3436 2017-11-14 09:45:28,566 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,566 [DEBUG] Moving from ref0162410.3e5 to ref0162410.2e3 (p=1) 2017-11-14 09:45:28,566 [DEBUG] unimproved gap 2017-11-14 09:45:28,566 [DEBUG] Moving from ref0162410.2e3 to ref0162410.2e5 (p=1) 2017-11-14 09:45:28,566 [DEBUG] contig 2017-11-14 09:45:28,566 [DEBUG] who? ref0162410.2e5 ref0162410.2e3 2017-11-14 09:45:28,566 [DEBUG] Grabbing contig between nodes ref0162410.2e5 & ref0162410.2e3 - [trim 0, 0] 2017-11-14 09:45:28,566 [DEBUG] contig 3132 to 3189 2017-11-14 09:45:28,566 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,566 [DEBUG] Moving from ref0162410.2e5 to ref0162410.1e3 (p=1) 2017-11-14 09:45:28,567 [DEBUG] unimproved gap 2017-11-14 09:45:28,567 [DEBUG] Moving from ref0162410.1e3 to ref0162410.1e5 (p=1) 2017-11-14 09:45:28,567 [DEBUG] contig 2017-11-14 09:45:28,567 [DEBUG] who? ref0162410.1e5 ref0162410.1e3 2017-11-14 09:45:28,567 [DEBUG] Grabbing contig between nodes ref0162410.1e5 & ref0162410.1e3 - [trim 0, 0] 2017-11-14 09:45:28,567 [DEBUG] contig 446 to 2789 2017-11-14 09:45:28,567 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,567 [DEBUG] Moving from ref0162410.1e5 to ref0162410.0e3 (p=1) 2017-11-14 09:45:28,567 [DEBUG] unimproved gap 2017-11-14 09:45:28,567 [DEBUG] Moving from ref0162410.0e3 to ref0162410e5 (p=1) 2017-11-14 09:45:28,567 [DEBUG] contig 2017-11-14 09:45:28,567 [DEBUG] who? ref0162410e5 ref0162410.0e3 2017-11-14 09:45:28,567 [DEBUG] Grabbing contig between nodes ref0162410e5 & ref0162410.0e3 - [trim 0, 0] 2017-11-14 09:45:28,568 [DEBUG] contig 0 to 193 2017-11-14 09:45:28,568 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,568 [DEBUG] FirstFlipping 84 2017-11-14 09:45:28,568 [DEBUG] Contig 85 2017-11-14 09:45:28,570 [DEBUG] Moving from ref0144915e5 to ref0144915.0e3 (p=1) 2017-11-14 09:45:28,570 [DEBUG] contig 2017-11-14 09:45:28,570 [DEBUG] who? ref0144915e5 ref0144915.0e3 2017-11-14 09:45:28,570 [DEBUG] Grabbing contig between nodes ref0144915e5 & ref0144915.0e3 - [trim 0, 0] 2017-11-14 09:45:28,570 [DEBUG] contig 0 to 3150 2017-11-14 09:45:28,570 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,571 [DEBUG] Moving from ref0144915.0e3 to ref0144915.1e5 (p=1) 2017-11-14 09:45:28,571 [DEBUG] unimproved gap 2017-11-14 09:45:28,571 [DEBUG] Moving from ref0144915.1e5 to ref0144915.1e3 (p=1) 2017-11-14 09:45:28,571 [DEBUG] contig 2017-11-14 09:45:28,571 [DEBUG] who? ref0144915.1e5 ref0144915.1e3 2017-11-14 09:45:28,571 [DEBUG] Grabbing contig between nodes ref0144915.1e5 & ref0144915.1e3 - [trim 0, 0] 2017-11-14 09:45:28,571 [DEBUG] contig 3224 to 3256 2017-11-14 09:45:28,571 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,571 [DEBUG] Moving from ref0144915.1e3 to ref0144915.2e5 (p=1) 2017-11-14 09:45:28,571 [DEBUG] unimproved gap 2017-11-14 09:45:28,571 [DEBUG] Moving from ref0144915.2e5 to ref0144915.2e3 (p=1) 2017-11-14 09:45:28,571 [DEBUG] contig 2017-11-14 09:45:28,572 [DEBUG] who? ref0144915.2e5 ref0144915.2e3 2017-11-14 09:45:28,572 [DEBUG] Grabbing contig between nodes ref0144915.2e5 & ref0144915.2e3 - [trim 0, 0] 2017-11-14 09:45:28,572 [DEBUG] contig 3385 to 6533 2017-11-14 09:45:28,572 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,572 [DEBUG] Moving from ref0144915.2e3 to ref0144915.3e5 (p=1) 2017-11-14 09:45:28,572 [DEBUG] unimproved gap 2017-11-14 09:45:28,572 [DEBUG] Moving from ref0144915.3e5 to ref0144915.3e3 (p=1) 2017-11-14 09:45:28,572 [DEBUG] contig 2017-11-14 09:45:28,572 [DEBUG] who? ref0144915.3e5 ref0144915.3e3 2017-11-14 09:45:28,572 [DEBUG] Grabbing contig between nodes ref0144915.3e5 & ref0144915.3e3 - [trim 0, 0] 2017-11-14 09:45:28,572 [DEBUG] contig 7031 to 7073 2017-11-14 09:45:28,573 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,573 [DEBUG] Moving from ref0144915.3e3 to ref0144915.4e5 (p=1) 2017-11-14 09:45:28,573 [DEBUG] unimproved gap 2017-11-14 09:45:28,573 [DEBUG] Moving from ref0144915.4e5 to ref0144915.4e3 (p=1) 2017-11-14 09:45:28,573 [DEBUG] contig 2017-11-14 09:45:28,573 [DEBUG] who? ref0144915.4e5 ref0144915.4e3 2017-11-14 09:45:28,573 [DEBUG] Grabbing contig between nodes ref0144915.4e5 & ref0144915.4e3 - [trim 0, 0] 2017-11-14 09:45:28,573 [DEBUG] contig 7410 to 7764 2017-11-14 09:45:28,573 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,573 [DEBUG] Moving from ref0144915.4e3 to ref0144915.5e5 (p=1) 2017-11-14 09:45:28,573 [DEBUG] unimproved gap 2017-11-14 09:45:28,573 [DEBUG] Moving from ref0144915.5e5 to ref0144915.5e3 (p=1) 2017-11-14 09:45:28,573 [DEBUG] contig 2017-11-14 09:45:28,573 [DEBUG] who? ref0144915.5e5 ref0144915.5e3 2017-11-14 09:45:28,574 [DEBUG] Grabbing contig between nodes ref0144915.5e5 & ref0144915.5e3 - [trim 0, 0] 2017-11-14 09:45:28,574 [DEBUG] contig 8000 to 8324 2017-11-14 09:45:28,574 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,574 [DEBUG] Moving from ref0144915.5e3 to ref0144915.6e5 (p=1) 2017-11-14 09:45:28,574 [DEBUG] unimproved gap 2017-11-14 09:45:28,574 [DEBUG] Moving from ref0144915.6e5 to ref0144915.6e3 (p=1) 2017-11-14 09:45:28,574 [DEBUG] contig 2017-11-14 09:45:28,574 [DEBUG] who? ref0144915.6e5 ref0144915.6e3 2017-11-14 09:45:28,574 [DEBUG] Grabbing contig between nodes ref0144915.6e5 & ref0144915.6e3 - [trim 0, 0] 2017-11-14 09:45:28,574 [DEBUG] contig 8544 to 9238 2017-11-14 09:45:28,574 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,574 [DEBUG] Moving from ref0144915.6e3 to ref0144915.7e5 (p=1) 2017-11-14 09:45:28,574 [DEBUG] unimproved gap 2017-11-14 09:45:28,575 [DEBUG] Moving from ref0144915.7e5 to ref0144915.7e3 (p=1) 2017-11-14 09:45:28,575 [DEBUG] contig 2017-11-14 09:45:28,575 [DEBUG] who? ref0144915.7e5 ref0144915.7e3 2017-11-14 09:45:28,575 [DEBUG] Grabbing contig between nodes ref0144915.7e5 & ref0144915.7e3 - [trim 0, 0] 2017-11-14 09:45:28,575 [DEBUG] contig 9593 to 12997 2017-11-14 09:45:28,575 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,575 [DEBUG] Moving from ref0144915.7e3 to ref0144915.8e5 (p=1) 2017-11-14 09:45:28,575 [DEBUG] unimproved gap 2017-11-14 09:45:28,575 [DEBUG] Moving from ref0144915.8e5 to ref0144915.8e3 (p=1) 2017-11-14 09:45:28,575 [DEBUG] contig 2017-11-14 09:45:28,575 [DEBUG] who? ref0144915.8e5 ref0144915.8e3 2017-11-14 09:45:28,575 [DEBUG] Grabbing contig between nodes ref0144915.8e5 & ref0144915.8e3 - [trim 0, 0] 2017-11-14 09:45:28,575 [DEBUG] contig 13355 to 13990 2017-11-14 09:45:28,576 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,576 [DEBUG] Moving from ref0144915.8e3 to ref0144915.9e5 (p=1) 2017-11-14 09:45:28,576 [DEBUG] unimproved gap 2017-11-14 09:45:28,576 [DEBUG] Moving from ref0144915.9e5 to ref0144915.9e3 (p=1) 2017-11-14 09:45:28,576 [DEBUG] contig 2017-11-14 09:45:28,576 [DEBUG] who? ref0144915.9e5 ref0144915.9e3 2017-11-14 09:45:28,576 [DEBUG] Grabbing contig between nodes ref0144915.9e5 & ref0144915.9e3 - [trim 0, 0] 2017-11-14 09:45:28,576 [DEBUG] contig 14050 to 14879 2017-11-14 09:45:28,576 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,576 [DEBUG] Moving from ref0144915.9e3 to ref0144915.10e5 (p=1) 2017-11-14 09:45:28,576 [DEBUG] unimproved gap 2017-11-14 09:45:28,576 [DEBUG] Moving from ref0144915.10e5 to ref0144915.10e3 (p=1) 2017-11-14 09:45:28,576 [DEBUG] contig 2017-11-14 09:45:28,577 [DEBUG] who? ref0144915.10e5 ref0144915.10e3 2017-11-14 09:45:28,577 [DEBUG] Grabbing contig between nodes ref0144915.10e5 & ref0144915.10e3 - [trim 0, 0] 2017-11-14 09:45:28,577 [DEBUG] contig 14987 to 15304 2017-11-14 09:45:28,577 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,577 [DEBUG] Moving from ref0144915.10e3 to ref0144915.11e5 (p=1) 2017-11-14 09:45:28,577 [DEBUG] unimproved gap 2017-11-14 09:45:28,577 [DEBUG] Moving from ref0144915.11e5 to ref0144915.11e3 (p=1) 2017-11-14 09:45:28,577 [DEBUG] contig 2017-11-14 09:45:28,577 [DEBUG] who? ref0144915.11e5 ref0144915.11e3 2017-11-14 09:45:28,577 [DEBUG] Grabbing contig between nodes ref0144915.11e5 & ref0144915.11e3 - [trim 0, 0] 2017-11-14 09:45:28,577 [DEBUG] contig 15840 to 15880 2017-11-14 09:45:28,577 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,577 [DEBUG] Moving from ref0144915.11e3 to ref0144915.12e5 (p=1) 2017-11-14 09:45:28,578 [DEBUG] unimproved gap 2017-11-14 09:45:28,578 [DEBUG] Moving from ref0144915.12e5 to ref0144915.12e3 (p=1) 2017-11-14 09:45:28,578 [DEBUG] contig 2017-11-14 09:45:28,578 [DEBUG] who? ref0144915.12e5 ref0144915.12e3 2017-11-14 09:45:28,578 [DEBUG] Grabbing contig between nodes ref0144915.12e5 & ref0144915.12e3 - [trim 0, 0] 2017-11-14 09:45:28,578 [DEBUG] contig 16150 to 16182 2017-11-14 09:45:28,578 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,578 [DEBUG] Moving from ref0144915.12e3 to ref0144915.13e5 (p=1) 2017-11-14 09:45:28,578 [DEBUG] unimproved gap 2017-11-14 09:45:28,578 [DEBUG] Moving from ref0144915.13e5 to ref0144915.13e3 (p=1) 2017-11-14 09:45:28,578 [DEBUG] contig 2017-11-14 09:45:28,578 [DEBUG] who? ref0144915.13e5 ref0144915.13e3 2017-11-14 09:45:28,578 [DEBUG] Grabbing contig between nodes ref0144915.13e5 & ref0144915.13e3 - [trim 0, 0] 2017-11-14 09:45:28,579 [DEBUG] contig 16471 to 16504 2017-11-14 09:45:28,579 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,579 [DEBUG] Moving from ref0144915.13e3 to ref0144915.14e5 (p=1) 2017-11-14 09:45:28,579 [DEBUG] unimproved gap 2017-11-14 09:45:28,579 [DEBUG] Moving from ref0144915.14e5 to ref0144915.14e3 (p=1) 2017-11-14 09:45:28,579 [DEBUG] contig 2017-11-14 09:45:28,579 [DEBUG] who? ref0144915.14e5 ref0144915.14e3 2017-11-14 09:45:28,579 [DEBUG] Grabbing contig between nodes ref0144915.14e5 & ref0144915.14e3 - [trim 0, 0] 2017-11-14 09:45:28,579 [DEBUG] contig 16661 to 17566 2017-11-14 09:45:28,579 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,579 [DEBUG] Moving from ref0144915.14e3 to ref0144915.15e5 (p=1) 2017-11-14 09:45:28,579 [DEBUG] unimproved gap 2017-11-14 09:45:28,579 [DEBUG] Moving from ref0144915.15e5 to ref0144915.15e3 (p=1) 2017-11-14 09:45:28,580 [DEBUG] contig 2017-11-14 09:45:28,580 [DEBUG] who? ref0144915.15e5 ref0144915.15e3 2017-11-14 09:45:28,580 [DEBUG] Grabbing contig between nodes ref0144915.15e5 & ref0144915.15e3 - [trim 0, 0] 2017-11-14 09:45:28,580 [DEBUG] contig 17817 to 18328 2017-11-14 09:45:28,580 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,580 [DEBUG] Moving from ref0144915.15e3 to ref0144915.16e5 (p=1) 2017-11-14 09:45:28,580 [DEBUG] unimproved gap 2017-11-14 09:45:28,580 [DEBUG] Moving from ref0144915.16e5 to ref0144915.16e3 (p=1) 2017-11-14 09:45:28,580 [DEBUG] contig 2017-11-14 09:45:28,580 [DEBUG] who? ref0144915.16e5 ref0144915.16e3 2017-11-14 09:45:28,580 [DEBUG] Grabbing contig between nodes ref0144915.16e5 & ref0144915.16e3 - [trim 0, 0] 2017-11-14 09:45:28,580 [DEBUG] contig 18949 to 19836 2017-11-14 09:45:28,581 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,581 [DEBUG] Moving from ref0144915.16e3 to ref0144915.17e5 (p=1) 2017-11-14 09:45:28,581 [DEBUG] unimproved gap 2017-11-14 09:45:28,581 [DEBUG] Moving from ref0144915.17e5 to ref0144915e3 (p=1) 2017-11-14 09:45:28,581 [DEBUG] contig 2017-11-14 09:45:28,581 [DEBUG] who? ref0144915.17e5 ref0144915e3 2017-11-14 09:45:28,581 [DEBUG] Grabbing contig between nodes ref0144915.17e5 & ref0144915e3 - [trim 0, 0] 2017-11-14 09:45:28,581 [DEBUG] contig 20261 to 20294 2017-11-14 09:45:28,581 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,581 [DEBUG] Contig 86 2017-11-14 09:45:28,583 [DEBUG] Moving from ref0447423e3 to ref0447423.17e5 (p=1) 2017-11-14 09:45:28,583 [DEBUG] contig 2017-11-14 09:45:28,583 [DEBUG] who? ref0447423.17e5 ref0447423e3 2017-11-14 09:45:28,584 [DEBUG] Grabbing contig between nodes ref0447423.17e5 & ref0447423e3 - [trim 0, 0] 2017-11-14 09:45:28,584 [DEBUG] contig 28946 to 29979 2017-11-14 09:45:28,584 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,584 [DEBUG] Moving from ref0447423.17e5 to ref0447423.16e3 (p=1) 2017-11-14 09:45:28,584 [DEBUG] unimproved gap 2017-11-14 09:45:28,584 [DEBUG] Moving from ref0447423.16e3 to ref0447423.16e5 (p=1) 2017-11-14 09:45:28,584 [DEBUG] contig 2017-11-14 09:45:28,584 [DEBUG] who? ref0447423.16e5 ref0447423.16e3 2017-11-14 09:45:28,584 [DEBUG] Grabbing contig between nodes ref0447423.16e5 & ref0447423.16e3 - [trim 0, 0] 2017-11-14 09:45:28,584 [DEBUG] contig 27579 to 28598 2017-11-14 09:45:28,584 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,584 [DEBUG] Moving from ref0447423.16e5 to ref0447423.15e3 (p=1) 2017-11-14 09:45:28,585 [DEBUG] unimproved gap 2017-11-14 09:45:28,585 [DEBUG] Moving from ref0447423.15e3 to ref0447423.15e5 (p=1) 2017-11-14 09:45:28,585 [DEBUG] contig 2017-11-14 09:45:28,585 [DEBUG] who? ref0447423.15e5 ref0447423.15e3 2017-11-14 09:45:28,585 [DEBUG] Grabbing contig between nodes ref0447423.15e5 & ref0447423.15e3 - [trim 0, 0] 2017-11-14 09:45:28,585 [DEBUG] contig 26043 to 27056 2017-11-14 09:45:28,585 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,585 [DEBUG] Moving from ref0447423.15e5 to ref0447423.14e3 (p=1) 2017-11-14 09:45:28,585 [DEBUG] unimproved gap 2017-11-14 09:45:28,585 [DEBUG] Moving from ref0447423.14e3 to ref0447423.14e5 (p=1) 2017-11-14 09:45:28,585 [DEBUG] contig 2017-11-14 09:45:28,585 [DEBUG] who? ref0447423.14e5 ref0447423.14e3 2017-11-14 09:45:28,585 [DEBUG] Grabbing contig between nodes ref0447423.14e5 & ref0447423.14e3 - [trim 0, 0] 2017-11-14 09:45:28,586 [DEBUG] contig 25532 to 25747 2017-11-14 09:45:28,586 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,586 [DEBUG] Moving from ref0447423.14e5 to ref0447423.13e3 (p=1) 2017-11-14 09:45:28,586 [DEBUG] unimproved gap 2017-11-14 09:45:28,586 [DEBUG] Moving from ref0447423.13e3 to ref0447423.13e5 (p=1) 2017-11-14 09:45:28,586 [DEBUG] contig 2017-11-14 09:45:28,586 [DEBUG] who? ref0447423.13e5 ref0447423.13e3 2017-11-14 09:45:28,586 [DEBUG] Grabbing contig between nodes ref0447423.13e5 & ref0447423.13e3 - [trim 0, 0] 2017-11-14 09:45:28,586 [DEBUG] contig 22940 to 25209 2017-11-14 09:45:28,586 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,586 [DEBUG] Moving from ref0447423.13e5 to ref0447423.12e3 (p=1) 2017-11-14 09:45:28,586 [DEBUG] unimproved gap 2017-11-14 09:45:28,586 [DEBUG] Moving from ref0447423.12e3 to ref0447423.12e5 (p=1) 2017-11-14 09:45:28,587 [DEBUG] contig 2017-11-14 09:45:28,587 [DEBUG] who? ref0447423.12e5 ref0447423.12e3 2017-11-14 09:45:28,587 [DEBUG] Grabbing contig between nodes ref0447423.12e5 & ref0447423.12e3 - [trim 0, 0] 2017-11-14 09:45:28,587 [DEBUG] contig 20317 to 22896 2017-11-14 09:45:28,587 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,587 [DEBUG] Moving from ref0447423.12e5 to ref0447423.11e3 (p=1) 2017-11-14 09:45:28,587 [DEBUG] unimproved gap 2017-11-14 09:45:28,587 [DEBUG] Moving from ref0447423.11e3 to ref0447423.11e5 (p=1) 2017-11-14 09:45:28,587 [DEBUG] contig 2017-11-14 09:45:28,587 [DEBUG] who? ref0447423.11e5 ref0447423.11e3 2017-11-14 09:45:28,587 [DEBUG] Grabbing contig between nodes ref0447423.11e5 & ref0447423.11e3 - [trim 0, 0] 2017-11-14 09:45:28,587 [DEBUG] contig 19185 to 19826 2017-11-14 09:45:28,587 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,587 [DEBUG] Moving from ref0447423.11e5 to ref0447423.10e3 (p=1) 2017-11-14 09:45:28,588 [DEBUG] unimproved gap 2017-11-14 09:45:28,588 [DEBUG] Moving from ref0447423.10e3 to ref0447423.10e5 (p=1) 2017-11-14 09:45:28,588 [DEBUG] contig 2017-11-14 09:45:28,588 [DEBUG] who? ref0447423.10e5 ref0447423.10e3 2017-11-14 09:45:28,588 [DEBUG] Grabbing contig between nodes ref0447423.10e5 & ref0447423.10e3 - [trim 0, 0] 2017-11-14 09:45:28,588 [DEBUG] contig 12197 to 19009 2017-11-14 09:45:28,588 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,588 [DEBUG] Moving from ref0447423.10e5 to ref0447423.9e3 (p=1) 2017-11-14 09:45:28,588 [DEBUG] unimproved gap 2017-11-14 09:45:28,588 [DEBUG] Moving from ref0447423.9e3 to ref0447423.9e5 (p=1) 2017-11-14 09:45:28,588 [DEBUG] contig 2017-11-14 09:45:28,588 [DEBUG] who? ref0447423.9e5 ref0447423.9e3 2017-11-14 09:45:28,588 [DEBUG] Grabbing contig between nodes ref0447423.9e5 & ref0447423.9e3 - [trim 0, 0] 2017-11-14 09:45:28,589 [DEBUG] contig 11997 to 12042 2017-11-14 09:45:28,589 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,589 [DEBUG] Moving from ref0447423.9e5 to ref0447423.8e3 (p=1) 2017-11-14 09:45:28,589 [DEBUG] unimproved gap 2017-11-14 09:45:28,589 [DEBUG] Moving from ref0447423.8e3 to ref0447423.8e5 (p=1) 2017-11-14 09:45:28,589 [DEBUG] contig 2017-11-14 09:45:28,589 [DEBUG] who? ref0447423.8e5 ref0447423.8e3 2017-11-14 09:45:28,589 [DEBUG] Grabbing contig between nodes ref0447423.8e5 & ref0447423.8e3 - [trim 0, 0] 2017-11-14 09:45:28,589 [DEBUG] contig 9686 to 11685 2017-11-14 09:45:28,589 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,589 [DEBUG] Moving from ref0447423.8e5 to ref0447423.7e3 (p=1) 2017-11-14 09:45:28,589 [DEBUG] unimproved gap 2017-11-14 09:45:28,589 [DEBUG] Moving from ref0447423.7e3 to ref0447423.7e5 (p=1) 2017-11-14 09:45:28,590 [DEBUG] contig 2017-11-14 09:45:28,590 [DEBUG] who? ref0447423.7e5 ref0447423.7e3 2017-11-14 09:45:28,590 [DEBUG] Grabbing contig between nodes ref0447423.7e5 & ref0447423.7e3 - [trim 0, 0] 2017-11-14 09:45:28,590 [DEBUG] contig 7947 to 9645 2017-11-14 09:45:28,590 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,590 [DEBUG] Moving from ref0447423.7e5 to ref0447423.6e3 (p=1) 2017-11-14 09:45:28,590 [DEBUG] unimproved gap 2017-11-14 09:45:28,590 [DEBUG] Moving from ref0447423.6e3 to ref0447423.6e5 (p=1) 2017-11-14 09:45:28,590 [DEBUG] contig 2017-11-14 09:45:28,590 [DEBUG] who? ref0447423.6e5 ref0447423.6e3 2017-11-14 09:45:28,590 [DEBUG] Grabbing contig between nodes ref0447423.6e5 & ref0447423.6e3 - [trim 0, 0] 2017-11-14 09:45:28,590 [DEBUG] contig 7871 to 7921 2017-11-14 09:45:28,590 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,590 [DEBUG] Moving from ref0447423.6e5 to ref0447423.5e3 (p=1) 2017-11-14 09:45:28,591 [DEBUG] unimproved gap 2017-11-14 09:45:28,591 [DEBUG] Moving from ref0447423.5e3 to ref0447423.5e5 (p=1) 2017-11-14 09:45:28,591 [DEBUG] contig 2017-11-14 09:45:28,591 [DEBUG] who? ref0447423.5e5 ref0447423.5e3 2017-11-14 09:45:28,591 [DEBUG] Grabbing contig between nodes ref0447423.5e5 & ref0447423.5e3 - [trim 0, 0] 2017-11-14 09:45:28,591 [DEBUG] contig 7734 to 7767 2017-11-14 09:45:28,591 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,591 [DEBUG] Moving from ref0447423.5e5 to ref0447423.4e3 (p=1) 2017-11-14 09:45:28,591 [DEBUG] unimproved gap 2017-11-14 09:45:28,591 [DEBUG] Moving from ref0447423.4e3 to ref0447423.4e5 (p=1) 2017-11-14 09:45:28,591 [DEBUG] contig 2017-11-14 09:45:28,591 [DEBUG] who? ref0447423.4e5 ref0447423.4e3 2017-11-14 09:45:28,592 [DEBUG] Grabbing contig between nodes ref0447423.4e5 & ref0447423.4e3 - [trim 0, 0] 2017-11-14 09:45:28,592 [DEBUG] contig 7207 to 7601 2017-11-14 09:45:28,592 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,592 [DEBUG] Moving from ref0447423.4e5 to ref0447423.3e3 (p=1) 2017-11-14 09:45:28,592 [DEBUG] unimproved gap 2017-11-14 09:45:28,592 [DEBUG] Moving from ref0447423.3e3 to ref0447423.3e5 (p=1) 2017-11-14 09:45:28,592 [DEBUG] contig 2017-11-14 09:45:28,592 [DEBUG] who? ref0447423.3e5 ref0447423.3e3 2017-11-14 09:45:28,592 [DEBUG] Grabbing contig between nodes ref0447423.3e5 & ref0447423.3e3 - [trim 0, 0] 2017-11-14 09:45:28,592 [DEBUG] contig 6517 to 7104 2017-11-14 09:45:28,592 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,592 [DEBUG] Moving from ref0447423.3e5 to ref0447423.2e3 (p=1) 2017-11-14 09:45:28,593 [DEBUG] unimproved gap 2017-11-14 09:45:28,593 [DEBUG] Moving from ref0447423.2e3 to ref0447423.2e5 (p=1) 2017-11-14 09:45:28,593 [DEBUG] contig 2017-11-14 09:45:28,593 [DEBUG] who? ref0447423.2e5 ref0447423.2e3 2017-11-14 09:45:28,593 [DEBUG] Grabbing contig between nodes ref0447423.2e5 & ref0447423.2e3 - [trim 0, 0] 2017-11-14 09:45:28,593 [DEBUG] contig 3812 to 6332 2017-11-14 09:45:28,593 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,593 [DEBUG] Moving from ref0447423.2e5 to ref0447423.1e3 (p=1) 2017-11-14 09:45:28,593 [DEBUG] unimproved gap 2017-11-14 09:45:28,593 [DEBUG] Moving from ref0447423.1e3 to ref0447423.1e5 (p=1) 2017-11-14 09:45:28,593 [DEBUG] contig 2017-11-14 09:45:28,593 [DEBUG] who? ref0447423.1e5 ref0447423.1e3 2017-11-14 09:45:28,593 [DEBUG] Grabbing contig between nodes ref0447423.1e5 & ref0447423.1e3 - [trim 0, 0] 2017-11-14 09:45:28,594 [DEBUG] contig 780 to 3694 2017-11-14 09:45:28,594 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,594 [DEBUG] Moving from ref0447423.1e5 to ref0447423.0e3 (p=1) 2017-11-14 09:45:28,594 [DEBUG] unimproved gap 2017-11-14 09:45:28,594 [DEBUG] Moving from ref0447423.0e3 to ref0447423e5 (p=1) 2017-11-14 09:45:28,594 [DEBUG] contig 2017-11-14 09:45:28,594 [DEBUG] who? ref0447423e5 ref0447423.0e3 2017-11-14 09:45:28,594 [DEBUG] Grabbing contig between nodes ref0447423e5 & ref0447423.0e3 - [trim 0, 0] 2017-11-14 09:45:28,594 [DEBUG] contig 0 to 153 2017-11-14 09:45:28,594 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,594 [DEBUG] FirstFlipping 86 2017-11-14 09:45:28,595 [DEBUG] Contig 87 2017-11-14 09:45:28,597 [DEBUG] Moving from ref0212824e3 to ref0212824.17e5 (p=1) 2017-11-14 09:45:28,597 [DEBUG] contig 2017-11-14 09:45:28,597 [DEBUG] who? ref0212824.17e5 ref0212824e3 2017-11-14 09:45:28,597 [DEBUG] Grabbing contig between nodes ref0212824.17e5 & ref0212824e3 - [trim 0, 0] 2017-11-14 09:45:28,597 [DEBUG] contig 19778 to 20452 2017-11-14 09:45:28,597 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,597 [DEBUG] Moving from ref0212824.17e5 to ref0212824.16e3 (p=1) 2017-11-14 09:45:28,597 [DEBUG] unimproved gap 2017-11-14 09:45:28,597 [DEBUG] Moving from ref0212824.16e3 to ref0212824.16e5 (p=1) 2017-11-14 09:45:28,597 [DEBUG] contig 2017-11-14 09:45:28,597 [DEBUG] who? ref0212824.16e5 ref0212824.16e3 2017-11-14 09:45:28,597 [DEBUG] Grabbing contig between nodes ref0212824.16e5 & ref0212824.16e3 - [trim 0, 0] 2017-11-14 09:45:28,598 [DEBUG] contig 19606 to 19644 2017-11-14 09:45:28,598 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,598 [DEBUG] Moving from ref0212824.16e5 to ref0212824.15e3 (p=1) 2017-11-14 09:45:28,598 [DEBUG] unimproved gap 2017-11-14 09:45:28,598 [DEBUG] Moving from ref0212824.15e3 to ref0212824.15e5 (p=1) 2017-11-14 09:45:28,598 [DEBUG] contig 2017-11-14 09:45:28,598 [DEBUG] who? ref0212824.15e5 ref0212824.15e3 2017-11-14 09:45:28,598 [DEBUG] Grabbing contig between nodes ref0212824.15e5 & ref0212824.15e3 - [trim 0, 0] 2017-11-14 09:45:28,598 [DEBUG] contig 17059 to 19461 2017-11-14 09:45:28,598 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,598 [DEBUG] Moving from ref0212824.15e5 to ref0212824.14e3 (p=1) 2017-11-14 09:45:28,598 [DEBUG] unimproved gap 2017-11-14 09:45:28,598 [DEBUG] Moving from ref0212824.14e3 to ref0212824.14e5 (p=1) 2017-11-14 09:45:28,599 [DEBUG] contig 2017-11-14 09:45:28,599 [DEBUG] who? ref0212824.14e5 ref0212824.14e3 2017-11-14 09:45:28,599 [DEBUG] Grabbing contig between nodes ref0212824.14e5 & ref0212824.14e3 - [trim 0, 0] 2017-11-14 09:45:28,599 [DEBUG] contig 15798 to 16800 2017-11-14 09:45:28,599 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,599 [DEBUG] Moving from ref0212824.14e5 to ref0212824.13e3 (p=1) 2017-11-14 09:45:28,599 [DEBUG] unimproved gap 2017-11-14 09:45:28,599 [DEBUG] Moving from ref0212824.13e3 to ref0212824.13e5 (p=1) 2017-11-14 09:45:28,599 [DEBUG] contig 2017-11-14 09:45:28,599 [DEBUG] who? ref0212824.13e5 ref0212824.13e3 2017-11-14 09:45:28,599 [DEBUG] Grabbing contig between nodes ref0212824.13e5 & ref0212824.13e3 - [trim 0, 0] 2017-11-14 09:45:28,599 [DEBUG] contig 14761 to 15616 2017-11-14 09:45:28,599 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,600 [DEBUG] Moving from ref0212824.13e5 to ref0212824.12e3 (p=1) 2017-11-14 09:45:28,600 [DEBUG] unimproved gap 2017-11-14 09:45:28,600 [DEBUG] Moving from ref0212824.12e3 to ref0212824.12e5 (p=1) 2017-11-14 09:45:28,600 [DEBUG] contig 2017-11-14 09:45:28,600 [DEBUG] who? ref0212824.12e5 ref0212824.12e3 2017-11-14 09:45:28,600 [DEBUG] Grabbing contig between nodes ref0212824.12e5 & ref0212824.12e3 - [trim 0, 0] 2017-11-14 09:45:28,600 [DEBUG] contig 13462 to 14465 2017-11-14 09:45:28,600 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,600 [DEBUG] Moving from ref0212824.12e5 to ref0212824.11e3 (p=1) 2017-11-14 09:45:28,600 [DEBUG] unimproved gap 2017-11-14 09:45:28,600 [DEBUG] Moving from ref0212824.11e3 to ref0212824.11e5 (p=1) 2017-11-14 09:45:28,600 [DEBUG] contig 2017-11-14 09:45:28,601 [DEBUG] who? ref0212824.11e5 ref0212824.11e3 2017-11-14 09:45:28,601 [DEBUG] Grabbing contig between nodes ref0212824.11e5 & ref0212824.11e3 - [trim 0, 0] 2017-11-14 09:45:28,601 [DEBUG] contig 13138 to 13204 2017-11-14 09:45:28,601 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,601 [DEBUG] Moving from ref0212824.11e5 to ref0212824.10e3 (p=1) 2017-11-14 09:45:28,601 [DEBUG] unimproved gap 2017-11-14 09:45:28,601 [DEBUG] Moving from ref0212824.10e3 to ref0212824.10e5 (p=1) 2017-11-14 09:45:28,601 [DEBUG] contig 2017-11-14 09:45:28,601 [DEBUG] who? ref0212824.10e5 ref0212824.10e3 2017-11-14 09:45:28,601 [DEBUG] Grabbing contig between nodes ref0212824.10e5 & ref0212824.10e3 - [trim 0, 0] 2017-11-14 09:45:28,601 [DEBUG] contig 10288 to 12815 2017-11-14 09:45:28,601 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,601 [DEBUG] Moving from ref0212824.10e5 to ref0212824.9e3 (p=1) 2017-11-14 09:45:28,601 [DEBUG] unimproved gap 2017-11-14 09:45:28,602 [DEBUG] Moving from ref0212824.9e3 to ref0212824.9e5 (p=1) 2017-11-14 09:45:28,602 [DEBUG] contig 2017-11-14 09:45:28,602 [DEBUG] who? ref0212824.9e5 ref0212824.9e3 2017-11-14 09:45:28,602 [DEBUG] Grabbing contig between nodes ref0212824.9e5 & ref0212824.9e3 - [trim 0, 0] 2017-11-14 09:45:28,602 [DEBUG] contig 9631 to 9946 2017-11-14 09:45:28,602 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,602 [DEBUG] Moving from ref0212824.9e5 to ref0212824.8e3 (p=1) 2017-11-14 09:45:28,602 [DEBUG] unimproved gap 2017-11-14 09:45:28,602 [DEBUG] Moving from ref0212824.8e3 to ref0212824.8e5 (p=1) 2017-11-14 09:45:28,602 [DEBUG] contig 2017-11-14 09:45:28,602 [DEBUG] who? ref0212824.8e5 ref0212824.8e3 2017-11-14 09:45:28,602 [DEBUG] Grabbing contig between nodes ref0212824.8e5 & ref0212824.8e3 - [trim 0, 0] 2017-11-14 09:45:28,603 [DEBUG] contig 8637 to 9432 2017-11-14 09:45:28,603 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,603 [DEBUG] Moving from ref0212824.8e5 to ref0212824.7e3 (p=1) 2017-11-14 09:45:28,603 [DEBUG] unimproved gap 2017-11-14 09:45:28,603 [DEBUG] Moving from ref0212824.7e3 to ref0212824.7e5 (p=1) 2017-11-14 09:45:28,603 [DEBUG] contig 2017-11-14 09:45:28,603 [DEBUG] who? ref0212824.7e5 ref0212824.7e3 2017-11-14 09:45:28,603 [DEBUG] Grabbing contig between nodes ref0212824.7e5 & ref0212824.7e3 - [trim 0, 0] 2017-11-14 09:45:28,603 [DEBUG] contig 7490 to 8103 2017-11-14 09:45:28,603 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,603 [DEBUG] Moving from ref0212824.7e5 to ref0212824.6e3 (p=1) 2017-11-14 09:45:28,603 [DEBUG] unimproved gap 2017-11-14 09:45:28,603 [DEBUG] Moving from ref0212824.6e3 to ref0212824.6e5 (p=1) 2017-11-14 09:45:28,603 [DEBUG] contig 2017-11-14 09:45:28,604 [DEBUG] who? ref0212824.6e5 ref0212824.6e3 2017-11-14 09:45:28,604 [DEBUG] Grabbing contig between nodes ref0212824.6e5 & ref0212824.6e3 - [trim 0, 0] 2017-11-14 09:45:28,604 [DEBUG] contig 6221 to 7307 2017-11-14 09:45:28,604 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,604 [DEBUG] Moving from ref0212824.6e5 to ref0212824.5e3 (p=1) 2017-11-14 09:45:28,604 [DEBUG] unimproved gap 2017-11-14 09:45:28,604 [DEBUG] Moving from ref0212824.5e3 to ref0212824.5e5 (p=1) 2017-11-14 09:45:28,604 [DEBUG] contig 2017-11-14 09:45:28,604 [DEBUG] who? ref0212824.5e5 ref0212824.5e3 2017-11-14 09:45:28,604 [DEBUG] Grabbing contig between nodes ref0212824.5e5 & ref0212824.5e3 - [trim 0, 0] 2017-11-14 09:45:28,604 [DEBUG] contig 5459 to 6183 2017-11-14 09:45:28,604 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,604 [DEBUG] Moving from ref0212824.5e5 to ref0212824.4e3 (p=1) 2017-11-14 09:45:28,605 [DEBUG] unimproved gap 2017-11-14 09:45:28,605 [DEBUG] Moving from ref0212824.4e3 to ref0212824.4e5 (p=1) 2017-11-14 09:45:28,605 [DEBUG] contig 2017-11-14 09:45:28,605 [DEBUG] who? ref0212824.4e5 ref0212824.4e3 2017-11-14 09:45:28,605 [DEBUG] Grabbing contig between nodes ref0212824.4e5 & ref0212824.4e3 - [trim 0, 0] 2017-11-14 09:45:28,605 [DEBUG] contig 4038 to 5149 2017-11-14 09:45:28,605 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,605 [DEBUG] Moving from ref0212824.4e5 to ref0212824.3e3 (p=1) 2017-11-14 09:45:28,605 [DEBUG] unimproved gap 2017-11-14 09:45:28,605 [DEBUG] Moving from ref0212824.3e3 to ref0212824.3e5 (p=1) 2017-11-14 09:45:28,605 [DEBUG] contig 2017-11-14 09:45:28,605 [DEBUG] who? ref0212824.3e5 ref0212824.3e3 2017-11-14 09:45:28,605 [DEBUG] Grabbing contig between nodes ref0212824.3e5 & ref0212824.3e3 - [trim 0, 0] 2017-11-14 09:45:28,606 [DEBUG] contig 3726 to 3938 2017-11-14 09:45:28,606 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,606 [DEBUG] Moving from ref0212824.3e5 to ref0212824.2e3 (p=1) 2017-11-14 09:45:28,606 [DEBUG] unimproved gap 2017-11-14 09:45:28,606 [DEBUG] Moving from ref0212824.2e3 to ref0212824.2e5 (p=1) 2017-11-14 09:45:28,606 [DEBUG] contig 2017-11-14 09:45:28,606 [DEBUG] who? ref0212824.2e5 ref0212824.2e3 2017-11-14 09:45:28,606 [DEBUG] Grabbing contig between nodes ref0212824.2e5 & ref0212824.2e3 - [trim 0, 0] 2017-11-14 09:45:28,606 [DEBUG] contig 820 to 3641 2017-11-14 09:45:28,606 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,606 [DEBUG] Moving from ref0212824.2e5 to ref0212824.1e3 (p=1) 2017-11-14 09:45:28,606 [DEBUG] unimproved gap 2017-11-14 09:45:28,606 [DEBUG] Moving from ref0212824.1e3 to ref0212824.1e5 (p=1) 2017-11-14 09:45:28,607 [DEBUG] contig 2017-11-14 09:45:28,607 [DEBUG] who? ref0212824.1e5 ref0212824.1e3 2017-11-14 09:45:28,607 [DEBUG] Grabbing contig between nodes ref0212824.1e5 & ref0212824.1e3 - [trim 0, 0] 2017-11-14 09:45:28,607 [DEBUG] contig 626 to 664 2017-11-14 09:45:28,607 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,607 [DEBUG] Moving from ref0212824.1e5 to ref0212824.0e3 (p=1) 2017-11-14 09:45:28,607 [DEBUG] unimproved gap 2017-11-14 09:45:28,607 [DEBUG] Moving from ref0212824.0e3 to ref0212824e5 (p=1) 2017-11-14 09:45:28,607 [DEBUG] contig 2017-11-14 09:45:28,607 [DEBUG] who? ref0212824e5 ref0212824.0e3 2017-11-14 09:45:28,607 [DEBUG] Grabbing contig between nodes ref0212824e5 & ref0212824.0e3 - [trim 0, 0] 2017-11-14 09:45:28,607 [DEBUG] contig 0 to 91 2017-11-14 09:45:28,607 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,608 [DEBUG] FirstFlipping 87 2017-11-14 09:45:28,608 [DEBUG] Contig 88 2017-11-14 09:45:28,610 [DEBUG] Moving from ref0547758e5 to ref0547758.0e3 (p=1) 2017-11-14 09:45:28,610 [DEBUG] contig 2017-11-14 09:45:28,610 [DEBUG] who? ref0547758e5 ref0547758.0e3 2017-11-14 09:45:28,610 [DEBUG] Grabbing contig between nodes ref0547758e5 & ref0547758.0e3 - [trim 0, 0] 2017-11-14 09:45:28,610 [DEBUG] contig 0 to 2934 2017-11-14 09:45:28,610 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,610 [DEBUG] Moving from ref0547758.0e3 to ref0547758.1e5 (p=1) 2017-11-14 09:45:28,610 [DEBUG] unimproved gap 2017-11-14 09:45:28,610 [DEBUG] Moving from ref0547758.1e5 to ref0547758.1e3 (p=1) 2017-11-14 09:45:28,611 [DEBUG] contig 2017-11-14 09:45:28,611 [DEBUG] who? ref0547758.1e5 ref0547758.1e3 2017-11-14 09:45:28,611 [DEBUG] Grabbing contig between nodes ref0547758.1e5 & ref0547758.1e3 - [trim 0, 0] 2017-11-14 09:45:28,611 [DEBUG] contig 3084 to 3785 2017-11-14 09:45:28,611 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,611 [DEBUG] Moving from ref0547758.1e3 to ref0547758.2e5 (p=1) 2017-11-14 09:45:28,611 [DEBUG] unimproved gap 2017-11-14 09:45:28,611 [DEBUG] Moving from ref0547758.2e5 to ref0547758.2e3 (p=1) 2017-11-14 09:45:28,611 [DEBUG] contig 2017-11-14 09:45:28,611 [DEBUG] who? ref0547758.2e5 ref0547758.2e3 2017-11-14 09:45:28,611 [DEBUG] Grabbing contig between nodes ref0547758.2e5 & ref0547758.2e3 - [trim 0, 0] 2017-11-14 09:45:28,611 [DEBUG] contig 3929 to 6527 2017-11-14 09:45:28,611 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,612 [DEBUG] Moving from ref0547758.2e3 to ref0547758.3e5 (p=1) 2017-11-14 09:45:28,612 [DEBUG] unimproved gap 2017-11-14 09:45:28,612 [DEBUG] Moving from ref0547758.3e5 to ref0547758.3e3 (p=1) 2017-11-14 09:45:28,612 [DEBUG] contig 2017-11-14 09:45:28,612 [DEBUG] who? ref0547758.3e5 ref0547758.3e3 2017-11-14 09:45:28,612 [DEBUG] Grabbing contig between nodes ref0547758.3e5 & ref0547758.3e3 - [trim 0, 0] 2017-11-14 09:45:28,612 [DEBUG] contig 6654 to 10191 2017-11-14 09:45:28,612 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,612 [DEBUG] Moving from ref0547758.3e3 to ref0547758.4e5 (p=1) 2017-11-14 09:45:28,612 [DEBUG] unimproved gap 2017-11-14 09:45:28,612 [DEBUG] Moving from ref0547758.4e5 to ref0547758.4e3 (p=1) 2017-11-14 09:45:28,612 [DEBUG] contig 2017-11-14 09:45:28,612 [DEBUG] who? ref0547758.4e5 ref0547758.4e3 2017-11-14 09:45:28,613 [DEBUG] Grabbing contig between nodes ref0547758.4e5 & ref0547758.4e3 - [trim 0, 0] 2017-11-14 09:45:28,613 [DEBUG] contig 10356 to 10489 2017-11-14 09:45:28,613 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,613 [DEBUG] Moving from ref0547758.4e3 to ref0547758.5e5 (p=1) 2017-11-14 09:45:28,613 [DEBUG] unimproved gap 2017-11-14 09:45:28,613 [DEBUG] Moving from ref0547758.5e5 to ref0547758.5e3 (p=1) 2017-11-14 09:45:28,613 [DEBUG] contig 2017-11-14 09:45:28,613 [DEBUG] who? ref0547758.5e5 ref0547758.5e3 2017-11-14 09:45:28,613 [DEBUG] Grabbing contig between nodes ref0547758.5e5 & ref0547758.5e3 - [trim 0, 0] 2017-11-14 09:45:28,613 [DEBUG] contig 10809 to 12214 2017-11-14 09:45:28,613 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,613 [DEBUG] Moving from ref0547758.5e3 to ref0547758.6e5 (p=1) 2017-11-14 09:45:28,613 [DEBUG] unimproved gap 2017-11-14 09:45:28,614 [DEBUG] Moving from ref0547758.6e5 to ref0547758.6e3 (p=1) 2017-11-14 09:45:28,614 [DEBUG] contig 2017-11-14 09:45:28,614 [DEBUG] who? ref0547758.6e5 ref0547758.6e3 2017-11-14 09:45:28,614 [DEBUG] Grabbing contig between nodes ref0547758.6e5 & ref0547758.6e3 - [trim 0, 0] 2017-11-14 09:45:28,614 [DEBUG] contig 12861 to 13553 2017-11-14 09:45:28,614 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,614 [DEBUG] Moving from ref0547758.6e3 to ref0547758.7e5 (p=1) 2017-11-14 09:45:28,614 [DEBUG] unimproved gap 2017-11-14 09:45:28,614 [DEBUG] Moving from ref0547758.7e5 to ref0547758.7e3 (p=1) 2017-11-14 09:45:28,614 [DEBUG] contig 2017-11-14 09:45:28,614 [DEBUG] who? ref0547758.7e5 ref0547758.7e3 2017-11-14 09:45:28,614 [DEBUG] Grabbing contig between nodes ref0547758.7e5 & ref0547758.7e3 - [trim 0, 0] 2017-11-14 09:45:28,614 [DEBUG] contig 13946 to 16111 2017-11-14 09:45:28,615 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,615 [DEBUG] Moving from ref0547758.7e3 to ref0547758.8e5 (p=1) 2017-11-14 09:45:28,615 [DEBUG] unimproved gap 2017-11-14 09:45:28,615 [DEBUG] Moving from ref0547758.8e5 to ref0547758.8e3 (p=1) 2017-11-14 09:45:28,615 [DEBUG] contig 2017-11-14 09:45:28,615 [DEBUG] who? ref0547758.8e5 ref0547758.8e3 2017-11-14 09:45:28,615 [DEBUG] Grabbing contig between nodes ref0547758.8e5 & ref0547758.8e3 - [trim 0, 0] 2017-11-14 09:45:28,615 [DEBUG] contig 16394 to 16435 2017-11-14 09:45:28,615 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,615 [DEBUG] Moving from ref0547758.8e3 to ref0547758.9e5 (p=1) 2017-11-14 09:45:28,615 [DEBUG] unimproved gap 2017-11-14 09:45:28,615 [DEBUG] Moving from ref0547758.9e5 to ref0547758.9e3 (p=1) 2017-11-14 09:45:28,615 [DEBUG] contig 2017-11-14 09:45:28,616 [DEBUG] who? ref0547758.9e5 ref0547758.9e3 2017-11-14 09:45:28,616 [DEBUG] Grabbing contig between nodes ref0547758.9e5 & ref0547758.9e3 - [trim 0, 0] 2017-11-14 09:45:28,616 [DEBUG] contig 17025 to 17059 2017-11-14 09:45:28,616 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,616 [DEBUG] Moving from ref0547758.9e3 to ref0547758.10e5 (p=1) 2017-11-14 09:45:28,616 [DEBUG] unimproved gap 2017-11-14 09:45:28,616 [DEBUG] Moving from ref0547758.10e5 to ref0547758.10e3 (p=1) 2017-11-14 09:45:28,616 [DEBUG] contig 2017-11-14 09:45:28,616 [DEBUG] who? ref0547758.10e5 ref0547758.10e3 2017-11-14 09:45:28,616 [DEBUG] Grabbing contig between nodes ref0547758.10e5 & ref0547758.10e3 - [trim 0, 0] 2017-11-14 09:45:28,616 [DEBUG] contig 17735 to 18823 2017-11-14 09:45:28,616 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,616 [DEBUG] Moving from ref0547758.10e3 to ref0547758.11e5 (p=1) 2017-11-14 09:45:28,617 [DEBUG] unimproved gap 2017-11-14 09:45:28,617 [DEBUG] Moving from ref0547758.11e5 to ref0547758.11e3 (p=1) 2017-11-14 09:45:28,617 [DEBUG] contig 2017-11-14 09:45:28,617 [DEBUG] who? ref0547758.11e5 ref0547758.11e3 2017-11-14 09:45:28,617 [DEBUG] Grabbing contig between nodes ref0547758.11e5 & ref0547758.11e3 - [trim 0, 0] 2017-11-14 09:45:28,617 [DEBUG] contig 19015 to 20383 2017-11-14 09:45:28,617 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,617 [DEBUG] Moving from ref0547758.11e3 to ref0547758.12e5 (p=1) 2017-11-14 09:45:28,617 [DEBUG] unimproved gap 2017-11-14 09:45:28,617 [DEBUG] Moving from ref0547758.12e5 to ref0547758.12e3 (p=1) 2017-11-14 09:45:28,617 [DEBUG] contig 2017-11-14 09:45:28,617 [DEBUG] who? ref0547758.12e5 ref0547758.12e3 2017-11-14 09:45:28,617 [DEBUG] Grabbing contig between nodes ref0547758.12e5 & ref0547758.12e3 - [trim 0, 0] 2017-11-14 09:45:28,618 [DEBUG] contig 20554 to 20586 2017-11-14 09:45:28,618 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,618 [DEBUG] Moving from ref0547758.12e3 to ref0547758.13e5 (p=1) 2017-11-14 09:45:28,618 [DEBUG] unimproved gap 2017-11-14 09:45:28,618 [DEBUG] Moving from ref0547758.13e5 to ref0547758.13e3 (p=1) 2017-11-14 09:45:28,618 [DEBUG] contig 2017-11-14 09:45:28,618 [DEBUG] who? ref0547758.13e5 ref0547758.13e3 2017-11-14 09:45:28,618 [DEBUG] Grabbing contig between nodes ref0547758.13e5 & ref0547758.13e3 - [trim 0, 0] 2017-11-14 09:45:28,618 [DEBUG] contig 20725 to 20759 2017-11-14 09:45:28,618 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,618 [DEBUG] Moving from ref0547758.13e3 to ref0547758.14e5 (p=1) 2017-11-14 09:45:28,618 [DEBUG] unimproved gap 2017-11-14 09:45:28,618 [DEBUG] Moving from ref0547758.14e5 to ref0547758.14e3 (p=1) 2017-11-14 09:45:28,619 [DEBUG] contig 2017-11-14 09:45:28,619 [DEBUG] who? ref0547758.14e5 ref0547758.14e3 2017-11-14 09:45:28,619 [DEBUG] Grabbing contig between nodes ref0547758.14e5 & ref0547758.14e3 - [trim 0, 0] 2017-11-14 09:45:28,619 [DEBUG] contig 21161 to 21226 2017-11-14 09:45:28,619 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,619 [DEBUG] Moving from ref0547758.14e3 to ref0547758.15e5 (p=1) 2017-11-14 09:45:28,619 [DEBUG] unimproved gap 2017-11-14 09:45:28,619 [DEBUG] Moving from ref0547758.15e5 to ref0547758.15e3 (p=1) 2017-11-14 09:45:28,619 [DEBUG] contig 2017-11-14 09:45:28,619 [DEBUG] who? ref0547758.15e5 ref0547758.15e3 2017-11-14 09:45:28,619 [DEBUG] Grabbing contig between nodes ref0547758.15e5 & ref0547758.15e3 - [trim 0, 0] 2017-11-14 09:45:28,619 [DEBUG] contig 21551 to 21603 2017-11-14 09:45:28,619 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,619 [DEBUG] Moving from ref0547758.15e3 to ref0547758.16e5 (p=1) 2017-11-14 09:45:28,620 [DEBUG] unimproved gap 2017-11-14 09:45:28,620 [DEBUG] Moving from ref0547758.16e5 to ref0547758.16e3 (p=1) 2017-11-14 09:45:28,620 [DEBUG] contig 2017-11-14 09:45:28,620 [DEBUG] who? ref0547758.16e5 ref0547758.16e3 2017-11-14 09:45:28,620 [DEBUG] Grabbing contig between nodes ref0547758.16e5 & ref0547758.16e3 - [trim 0, 0] 2017-11-14 09:45:28,620 [DEBUG] contig 22196 to 24454 2017-11-14 09:45:28,620 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,620 [DEBUG] Moving from ref0547758.16e3 to ref0547758.17e5 (p=1) 2017-11-14 09:45:28,620 [DEBUG] unimproved gap 2017-11-14 09:45:28,620 [DEBUG] Moving from ref0547758.17e5 to ref0547758e3 (p=1) 2017-11-14 09:45:28,620 [DEBUG] contig 2017-11-14 09:45:28,620 [DEBUG] who? ref0547758.17e5 ref0547758e3 2017-11-14 09:45:28,621 [DEBUG] Grabbing contig between nodes ref0547758.17e5 & ref0547758e3 - [trim 0, 0] 2017-11-14 09:45:28,621 [DEBUG] contig 24567 to 25235 2017-11-14 09:45:28,621 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,621 [DEBUG] Contig 89 2017-11-14 09:45:28,623 [DEBUG] Moving from ref0600717e5 to ref0600717.0e3 (p=1) 2017-11-14 09:45:28,623 [DEBUG] contig 2017-11-14 09:45:28,623 [DEBUG] who? ref0600717e5 ref0600717.0e3 2017-11-14 09:45:28,623 [DEBUG] Grabbing contig between nodes ref0600717e5 & ref0600717.0e3 - [trim 0, 0] 2017-11-14 09:45:28,623 [DEBUG] contig 0 to 458 2017-11-14 09:45:28,623 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,623 [DEBUG] Moving from ref0600717.0e3 to ref0600717.1e5 (p=1) 2017-11-14 09:45:28,623 [DEBUG] unimproved gap 2017-11-14 09:45:28,624 [DEBUG] Moving from ref0600717.1e5 to ref0600717.1e3 (p=1) 2017-11-14 09:45:28,624 [DEBUG] contig 2017-11-14 09:45:28,624 [DEBUG] who? ref0600717.1e5 ref0600717.1e3 2017-11-14 09:45:28,624 [DEBUG] Grabbing contig between nodes ref0600717.1e5 & ref0600717.1e3 - [trim 0, 0] 2017-11-14 09:45:28,624 [DEBUG] contig 725 to 2525 2017-11-14 09:45:28,624 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,624 [DEBUG] Moving from ref0600717.1e3 to ref0600717.2e5 (p=1) 2017-11-14 09:45:28,624 [DEBUG] unimproved gap 2017-11-14 09:45:28,624 [DEBUG] Moving from ref0600717.2e5 to ref0600717.2e3 (p=1) 2017-11-14 09:45:28,624 [DEBUG] contig 2017-11-14 09:45:28,624 [DEBUG] who? ref0600717.2e5 ref0600717.2e3 2017-11-14 09:45:28,624 [DEBUG] Grabbing contig between nodes ref0600717.2e5 & ref0600717.2e3 - [trim 0, 0] 2017-11-14 09:45:28,625 [DEBUG] contig 2798 to 6226 2017-11-14 09:45:28,625 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,625 [DEBUG] Moving from ref0600717.2e3 to ref0600717.3e5 (p=1) 2017-11-14 09:45:28,625 [DEBUG] unimproved gap 2017-11-14 09:45:28,625 [DEBUG] Moving from ref0600717.3e5 to ref0600717.3e3 (p=1) 2017-11-14 09:45:28,625 [DEBUG] contig 2017-11-14 09:45:28,625 [DEBUG] who? ref0600717.3e5 ref0600717.3e3 2017-11-14 09:45:28,625 [DEBUG] Grabbing contig between nodes ref0600717.3e5 & ref0600717.3e3 - [trim 0, 0] 2017-11-14 09:45:28,625 [DEBUG] contig 6339 to 6368 2017-11-14 09:45:28,625 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,625 [DEBUG] Moving from ref0600717.3e3 to ref0600717.4e5 (p=1) 2017-11-14 09:45:28,625 [DEBUG] unimproved gap 2017-11-14 09:45:28,625 [DEBUG] Moving from ref0600717.4e5 to ref0600717.4e3 (p=1) 2017-11-14 09:45:28,626 [DEBUG] contig 2017-11-14 09:45:28,626 [DEBUG] who? ref0600717.4e5 ref0600717.4e3 2017-11-14 09:45:28,626 [DEBUG] Grabbing contig between nodes ref0600717.4e5 & ref0600717.4e3 - [trim 0, 0] 2017-11-14 09:45:28,626 [DEBUG] contig 6458 to 6524 2017-11-14 09:45:28,626 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,626 [DEBUG] Moving from ref0600717.4e3 to ref0600717.5e5 (p=1) 2017-11-14 09:45:28,626 [DEBUG] unimproved gap 2017-11-14 09:45:28,626 [DEBUG] Moving from ref0600717.5e5 to ref0600717.5e3 (p=1) 2017-11-14 09:45:28,626 [DEBUG] contig 2017-11-14 09:45:28,626 [DEBUG] who? ref0600717.5e5 ref0600717.5e3 2017-11-14 09:45:28,626 [DEBUG] Grabbing contig between nodes ref0600717.5e5 & ref0600717.5e3 - [trim 0, 0] 2017-11-14 09:45:28,626 [DEBUG] contig 6635 to 6668 2017-11-14 09:45:28,626 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,627 [DEBUG] Moving from ref0600717.5e3 to ref0600717.6e5 (p=1) 2017-11-14 09:45:28,627 [DEBUG] unimproved gap 2017-11-14 09:45:28,627 [DEBUG] Moving from ref0600717.6e5 to ref0600717.6e3 (p=1) 2017-11-14 09:45:28,627 [DEBUG] contig 2017-11-14 09:45:28,627 [DEBUG] who? ref0600717.6e5 ref0600717.6e3 2017-11-14 09:45:28,627 [DEBUG] Grabbing contig between nodes ref0600717.6e5 & ref0600717.6e3 - [trim 0, 0] 2017-11-14 09:45:28,627 [DEBUG] contig 6862 to 7073 2017-11-14 09:45:28,627 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,627 [DEBUG] Moving from ref0600717.6e3 to ref0600717.7e5 (p=1) 2017-11-14 09:45:28,627 [DEBUG] unimproved gap 2017-11-14 09:45:28,627 [DEBUG] Moving from ref0600717.7e5 to ref0600717.7e3 (p=1) 2017-11-14 09:45:28,627 [DEBUG] contig 2017-11-14 09:45:28,628 [DEBUG] who? ref0600717.7e5 ref0600717.7e3 2017-11-14 09:45:28,628 [DEBUG] Grabbing contig between nodes ref0600717.7e5 & ref0600717.7e3 - [trim 0, 0] 2017-11-14 09:45:28,628 [DEBUG] contig 7700 to 9650 2017-11-14 09:45:28,628 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,628 [DEBUG] Moving from ref0600717.7e3 to ref0600717.8e5 (p=1) 2017-11-14 09:45:28,628 [DEBUG] unimproved gap 2017-11-14 09:45:28,628 [DEBUG] Moving from ref0600717.8e5 to ref0600717.8e3 (p=1) 2017-11-14 09:45:28,628 [DEBUG] contig 2017-11-14 09:45:28,628 [DEBUG] who? ref0600717.8e5 ref0600717.8e3 2017-11-14 09:45:28,628 [DEBUG] Grabbing contig between nodes ref0600717.8e5 & ref0600717.8e3 - [trim 0, 0] 2017-11-14 09:45:28,628 [DEBUG] contig 10043 to 10316 2017-11-14 09:45:28,628 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,628 [DEBUG] Moving from ref0600717.8e3 to ref0600717.9e5 (p=1) 2017-11-14 09:45:28,629 [DEBUG] unimproved gap 2017-11-14 09:45:28,629 [DEBUG] Moving from ref0600717.9e5 to ref0600717.9e3 (p=1) 2017-11-14 09:45:28,629 [DEBUG] contig 2017-11-14 09:45:28,629 [DEBUG] who? ref0600717.9e5 ref0600717.9e3 2017-11-14 09:45:28,629 [DEBUG] Grabbing contig between nodes ref0600717.9e5 & ref0600717.9e3 - [trim 0, 0] 2017-11-14 09:45:28,629 [DEBUG] contig 10931 to 11592 2017-11-14 09:45:28,629 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,629 [DEBUG] Moving from ref0600717.9e3 to ref0600717.10e5 (p=1) 2017-11-14 09:45:28,629 [DEBUG] unimproved gap 2017-11-14 09:45:28,629 [DEBUG] Moving from ref0600717.10e5 to ref0600717.10e3 (p=1) 2017-11-14 09:45:28,629 [DEBUG] contig 2017-11-14 09:45:28,629 [DEBUG] who? ref0600717.10e5 ref0600717.10e3 2017-11-14 09:45:28,629 [DEBUG] Grabbing contig between nodes ref0600717.10e5 & ref0600717.10e3 - [trim 0, 0] 2017-11-14 09:45:28,630 [DEBUG] contig 11679 to 13914 2017-11-14 09:45:28,630 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,630 [DEBUG] Moving from ref0600717.10e3 to ref0600717.11e5 (p=1) 2017-11-14 09:45:28,630 [DEBUG] unimproved gap 2017-11-14 09:45:28,630 [DEBUG] Moving from ref0600717.11e5 to ref0600717.11e3 (p=1) 2017-11-14 09:45:28,630 [DEBUG] contig 2017-11-14 09:45:28,630 [DEBUG] who? ref0600717.11e5 ref0600717.11e3 2017-11-14 09:45:28,630 [DEBUG] Grabbing contig between nodes ref0600717.11e5 & ref0600717.11e3 - [trim 0, 0] 2017-11-14 09:45:28,630 [DEBUG] contig 14082 to 14467 2017-11-14 09:45:28,630 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,630 [DEBUG] Moving from ref0600717.11e3 to ref0600717.12e5 (p=1) 2017-11-14 09:45:28,630 [DEBUG] unimproved gap 2017-11-14 09:45:28,630 [DEBUG] Moving from ref0600717.12e5 to ref0600717.12e3 (p=1) 2017-11-14 09:45:28,631 [DEBUG] contig 2017-11-14 09:45:28,631 [DEBUG] who? ref0600717.12e5 ref0600717.12e3 2017-11-14 09:45:28,631 [DEBUG] Grabbing contig between nodes ref0600717.12e5 & ref0600717.12e3 - [trim 0, 0] 2017-11-14 09:45:28,631 [DEBUG] contig 14504 to 14655 2017-11-14 09:45:28,631 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,631 [DEBUG] Moving from ref0600717.12e3 to ref0600717.13e5 (p=1) 2017-11-14 09:45:28,631 [DEBUG] unimproved gap 2017-11-14 09:45:28,631 [DEBUG] Moving from ref0600717.13e5 to ref0600717.13e3 (p=1) 2017-11-14 09:45:28,631 [DEBUG] contig 2017-11-14 09:45:28,631 [DEBUG] who? ref0600717.13e5 ref0600717.13e3 2017-11-14 09:45:28,631 [DEBUG] Grabbing contig between nodes ref0600717.13e5 & ref0600717.13e3 - [trim 0, 0] 2017-11-14 09:45:28,631 [DEBUG] contig 15246 to 15391 2017-11-14 09:45:28,631 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,632 [DEBUG] Moving from ref0600717.13e3 to ref0600717.14e5 (p=1) 2017-11-14 09:45:28,632 [DEBUG] unimproved gap 2017-11-14 09:45:28,632 [DEBUG] Moving from ref0600717.14e5 to ref0600717.14e3 (p=1) 2017-11-14 09:45:28,632 [DEBUG] contig 2017-11-14 09:45:28,632 [DEBUG] who? ref0600717.14e5 ref0600717.14e3 2017-11-14 09:45:28,632 [DEBUG] Grabbing contig between nodes ref0600717.14e5 & ref0600717.14e3 - [trim 0, 0] 2017-11-14 09:45:28,632 [DEBUG] contig 15502 to 17299 2017-11-14 09:45:28,632 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,632 [DEBUG] Moving from ref0600717.14e3 to ref0600717.15e5 (p=1) 2017-11-14 09:45:28,632 [DEBUG] unimproved gap 2017-11-14 09:45:28,632 [DEBUG] Moving from ref0600717.15e5 to ref0600717.15e3 (p=1) 2017-11-14 09:45:28,632 [DEBUG] contig 2017-11-14 09:45:28,632 [DEBUG] who? ref0600717.15e5 ref0600717.15e3 2017-11-14 09:45:28,633 [DEBUG] Grabbing contig between nodes ref0600717.15e5 & ref0600717.15e3 - [trim 0, 0] 2017-11-14 09:45:28,633 [DEBUG] contig 17454 to 18364 2017-11-14 09:45:28,633 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,633 [DEBUG] Moving from ref0600717.15e3 to ref0600717.16e5 (p=1) 2017-11-14 09:45:28,633 [DEBUG] unimproved gap 2017-11-14 09:45:28,633 [DEBUG] Moving from ref0600717.16e5 to ref0600717.16e3 (p=1) 2017-11-14 09:45:28,633 [DEBUG] contig 2017-11-14 09:45:28,633 [DEBUG] who? ref0600717.16e5 ref0600717.16e3 2017-11-14 09:45:28,633 [DEBUG] Grabbing contig between nodes ref0600717.16e5 & ref0600717.16e3 - [trim 0, 0] 2017-11-14 09:45:28,633 [DEBUG] contig 18476 to 18513 2017-11-14 09:45:28,633 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,633 [DEBUG] Moving from ref0600717.16e3 to ref0600717.17e5 (p=1) 2017-11-14 09:45:28,633 [DEBUG] unimproved gap 2017-11-14 09:45:28,634 [DEBUG] Moving from ref0600717.17e5 to ref0600717e3 (p=1) 2017-11-14 09:45:28,634 [DEBUG] contig 2017-11-14 09:45:28,634 [DEBUG] who? ref0600717.17e5 ref0600717e3 2017-11-14 09:45:28,634 [DEBUG] Grabbing contig between nodes ref0600717.17e5 & ref0600717e3 - [trim 0, 0] 2017-11-14 09:45:28,634 [DEBUG] contig 18625 to 19739 2017-11-14 09:45:28,634 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,634 [DEBUG] Contig 90 2017-11-14 09:45:28,636 [DEBUG] Moving from ref0506750e3 to ref0506750.17e5 (p=1) 2017-11-14 09:45:28,636 [DEBUG] contig 2017-11-14 09:45:28,636 [DEBUG] who? ref0506750.17e5 ref0506750e3 2017-11-14 09:45:28,636 [DEBUG] Grabbing contig between nodes ref0506750.17e5 & ref0506750e3 - [trim 0, 0] 2017-11-14 09:45:28,636 [DEBUG] contig 28384 to 28435 2017-11-14 09:45:28,636 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,637 [DEBUG] Moving from ref0506750.17e5 to ref0506750.16e3 (p=1) 2017-11-14 09:45:28,637 [DEBUG] unimproved gap 2017-11-14 09:45:28,637 [DEBUG] Moving from ref0506750.16e3 to ref0506750.16e5 (p=1) 2017-11-14 09:45:28,637 [DEBUG] contig 2017-11-14 09:45:28,637 [DEBUG] who? ref0506750.16e5 ref0506750.16e3 2017-11-14 09:45:28,637 [DEBUG] Grabbing contig between nodes ref0506750.16e5 & ref0506750.16e3 - [trim 0, 0] 2017-11-14 09:45:28,637 [DEBUG] contig 28048 to 28086 2017-11-14 09:45:28,637 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,637 [DEBUG] Moving from ref0506750.16e5 to ref0506750.15e3 (p=1) 2017-11-14 09:45:28,637 [DEBUG] unimproved gap 2017-11-14 09:45:28,637 [DEBUG] Moving from ref0506750.15e3 to ref0506750.15e5 (p=1) 2017-11-14 09:45:28,637 [DEBUG] contig 2017-11-14 09:45:28,638 [DEBUG] who? ref0506750.15e5 ref0506750.15e3 2017-11-14 09:45:28,638 [DEBUG] Grabbing contig between nodes ref0506750.15e5 & ref0506750.15e3 - [trim 0, 0] 2017-11-14 09:45:28,638 [DEBUG] contig 26815 to 27688 2017-11-14 09:45:28,638 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,638 [DEBUG] Moving from ref0506750.15e5 to ref0506750.14e3 (p=1) 2017-11-14 09:45:28,638 [DEBUG] unimproved gap 2017-11-14 09:45:28,638 [DEBUG] Moving from ref0506750.14e3 to ref0506750.14e5 (p=1) 2017-11-14 09:45:28,638 [DEBUG] contig 2017-11-14 09:45:28,638 [DEBUG] who? ref0506750.14e5 ref0506750.14e3 2017-11-14 09:45:28,638 [DEBUG] Grabbing contig between nodes ref0506750.14e5 & ref0506750.14e3 - [trim 0, 0] 2017-11-14 09:45:28,638 [DEBUG] contig 25080 to 26595 2017-11-14 09:45:28,638 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,638 [DEBUG] Moving from ref0506750.14e5 to ref0506750.13e3 (p=1) 2017-11-14 09:45:28,639 [DEBUG] unimproved gap 2017-11-14 09:45:28,639 [DEBUG] Moving from ref0506750.13e3 to ref0506750.13e5 (p=1) 2017-11-14 09:45:28,639 [DEBUG] contig 2017-11-14 09:45:28,639 [DEBUG] who? ref0506750.13e5 ref0506750.13e3 2017-11-14 09:45:28,639 [DEBUG] Grabbing contig between nodes ref0506750.13e5 & ref0506750.13e3 - [trim 0, 0] 2017-11-14 09:45:28,639 [DEBUG] contig 19590 to 25042 2017-11-14 09:45:28,639 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,639 [DEBUG] Moving from ref0506750.13e5 to ref0506750.12e3 (p=1) 2017-11-14 09:45:28,639 [DEBUG] unimproved gap 2017-11-14 09:45:28,639 [DEBUG] Moving from ref0506750.12e3 to ref0506750.12e5 (p=1) 2017-11-14 09:45:28,639 [DEBUG] contig 2017-11-14 09:45:28,639 [DEBUG] who? ref0506750.12e5 ref0506750.12e3 2017-11-14 09:45:28,639 [DEBUG] Grabbing contig between nodes ref0506750.12e5 & ref0506750.12e3 - [trim 0, 0] 2017-11-14 09:45:28,640 [DEBUG] contig 19358 to 19501 2017-11-14 09:45:28,640 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,640 [DEBUG] Moving from ref0506750.12e5 to ref0506750.11e3 (p=1) 2017-11-14 09:45:28,640 [DEBUG] unimproved gap 2017-11-14 09:45:28,640 [DEBUG] Moving from ref0506750.11e3 to ref0506750.11e5 (p=1) 2017-11-14 09:45:28,640 [DEBUG] contig 2017-11-14 09:45:28,640 [DEBUG] who? ref0506750.11e5 ref0506750.11e3 2017-11-14 09:45:28,640 [DEBUG] Grabbing contig between nodes ref0506750.11e5 & ref0506750.11e3 - [trim 0, 0] 2017-11-14 09:45:28,640 [DEBUG] contig 16193 to 19166 2017-11-14 09:45:28,640 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,640 [DEBUG] Moving from ref0506750.11e5 to ref0506750.10e3 (p=1) 2017-11-14 09:45:28,640 [DEBUG] unimproved gap 2017-11-14 09:45:28,640 [DEBUG] Moving from ref0506750.10e3 to ref0506750.10e5 (p=1) 2017-11-14 09:45:28,641 [DEBUG] contig 2017-11-14 09:45:28,641 [DEBUG] who? ref0506750.10e5 ref0506750.10e3 2017-11-14 09:45:28,641 [DEBUG] Grabbing contig between nodes ref0506750.10e5 & ref0506750.10e3 - [trim 0, 0] 2017-11-14 09:45:28,641 [DEBUG] contig 13174 to 16145 2017-11-14 09:45:28,641 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,641 [DEBUG] Moving from ref0506750.10e5 to ref0506750.9e3 (p=1) 2017-11-14 09:45:28,641 [DEBUG] unimproved gap 2017-11-14 09:45:28,641 [DEBUG] Moving from ref0506750.9e3 to ref0506750.9e5 (p=1) 2017-11-14 09:45:28,641 [DEBUG] contig 2017-11-14 09:45:28,641 [DEBUG] who? ref0506750.9e5 ref0506750.9e3 2017-11-14 09:45:28,641 [DEBUG] Grabbing contig between nodes ref0506750.9e5 & ref0506750.9e3 - [trim 0, 0] 2017-11-14 09:45:28,641 [DEBUG] contig 11710 to 12556 2017-11-14 09:45:28,641 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,642 [DEBUG] Moving from ref0506750.9e5 to ref0506750.8e3 (p=1) 2017-11-14 09:45:28,642 [DEBUG] unimproved gap 2017-11-14 09:45:28,642 [DEBUG] Moving from ref0506750.8e3 to ref0506750.8e5 (p=1) 2017-11-14 09:45:28,642 [DEBUG] contig 2017-11-14 09:45:28,642 [DEBUG] who? ref0506750.8e5 ref0506750.8e3 2017-11-14 09:45:28,642 [DEBUG] Grabbing contig between nodes ref0506750.8e5 & ref0506750.8e3 - [trim 0, 0] 2017-11-14 09:45:28,642 [DEBUG] contig 11578 to 11620 2017-11-14 09:45:28,642 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,642 [DEBUG] Moving from ref0506750.8e5 to ref0506750.7e3 (p=1) 2017-11-14 09:45:28,642 [DEBUG] unimproved gap 2017-11-14 09:45:28,642 [DEBUG] Moving from ref0506750.7e3 to ref0506750.7e5 (p=1) 2017-11-14 09:45:28,642 [DEBUG] contig 2017-11-14 09:45:28,643 [DEBUG] who? ref0506750.7e5 ref0506750.7e3 2017-11-14 09:45:28,643 [DEBUG] Grabbing contig between nodes ref0506750.7e5 & ref0506750.7e3 - [trim 0, 0] 2017-11-14 09:45:28,643 [DEBUG] contig 10366 to 11547 2017-11-14 09:45:28,643 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,643 [DEBUG] Moving from ref0506750.7e5 to ref0506750.6e3 (p=1) 2017-11-14 09:45:28,643 [DEBUG] unimproved gap 2017-11-14 09:45:28,643 [DEBUG] Moving from ref0506750.6e3 to ref0506750.6e5 (p=1) 2017-11-14 09:45:28,643 [DEBUG] contig 2017-11-14 09:45:28,643 [DEBUG] who? ref0506750.6e5 ref0506750.6e3 2017-11-14 09:45:28,643 [DEBUG] Grabbing contig between nodes ref0506750.6e5 & ref0506750.6e3 - [trim 0, 0] 2017-11-14 09:45:28,643 [DEBUG] contig 8710 to 10175 2017-11-14 09:45:28,643 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,643 [DEBUG] Moving from ref0506750.6e5 to ref0506750.5e3 (p=1) 2017-11-14 09:45:28,644 [DEBUG] unimproved gap 2017-11-14 09:45:28,644 [DEBUG] Moving from ref0506750.5e3 to ref0506750.5e5 (p=1) 2017-11-14 09:45:28,644 [DEBUG] contig 2017-11-14 09:45:28,644 [DEBUG] who? ref0506750.5e5 ref0506750.5e3 2017-11-14 09:45:28,644 [DEBUG] Grabbing contig between nodes ref0506750.5e5 & ref0506750.5e3 - [trim 0, 0] 2017-11-14 09:45:28,644 [DEBUG] contig 8371 to 8626 2017-11-14 09:45:28,644 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,644 [DEBUG] Moving from ref0506750.5e5 to ref0506750.4e3 (p=1) 2017-11-14 09:45:28,644 [DEBUG] unimproved gap 2017-11-14 09:45:28,644 [DEBUG] Moving from ref0506750.4e3 to ref0506750.4e5 (p=1) 2017-11-14 09:45:28,644 [DEBUG] contig 2017-11-14 09:45:28,644 [DEBUG] who? ref0506750.4e5 ref0506750.4e3 2017-11-14 09:45:28,644 [DEBUG] Grabbing contig between nodes ref0506750.4e5 & ref0506750.4e3 - [trim 0, 0] 2017-11-14 09:45:28,645 [DEBUG] contig 8243 to 8285 2017-11-14 09:45:28,645 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,645 [DEBUG] Moving from ref0506750.4e5 to ref0506750.3e3 (p=1) 2017-11-14 09:45:28,645 [DEBUG] unimproved gap 2017-11-14 09:45:28,645 [DEBUG] Moving from ref0506750.3e3 to ref0506750.3e5 (p=1) 2017-11-14 09:45:28,645 [DEBUG] contig 2017-11-14 09:45:28,645 [DEBUG] who? ref0506750.3e5 ref0506750.3e3 2017-11-14 09:45:28,645 [DEBUG] Grabbing contig between nodes ref0506750.3e5 & ref0506750.3e3 - [trim 0, 0] 2017-11-14 09:45:28,645 [DEBUG] contig 8111 to 8179 2017-11-14 09:45:28,645 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,645 [DEBUG] Moving from ref0506750.3e5 to ref0506750.2e3 (p=1) 2017-11-14 09:45:28,645 [DEBUG] unimproved gap 2017-11-14 09:45:28,645 [DEBUG] Moving from ref0506750.2e3 to ref0506750.2e5 (p=1) 2017-11-14 09:45:28,646 [DEBUG] contig 2017-11-14 09:45:28,646 [DEBUG] who? ref0506750.2e5 ref0506750.2e3 2017-11-14 09:45:28,646 [DEBUG] Grabbing contig between nodes ref0506750.2e5 & ref0506750.2e3 - [trim 0, 0] 2017-11-14 09:45:28,646 [DEBUG] contig 6173 to 8086 2017-11-14 09:45:28,646 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,646 [DEBUG] Moving from ref0506750.2e5 to ref0506750.1e3 (p=1) 2017-11-14 09:45:28,646 [DEBUG] unimproved gap 2017-11-14 09:45:28,646 [DEBUG] Moving from ref0506750.1e3 to ref0506750.1e5 (p=1) 2017-11-14 09:45:28,646 [DEBUG] contig 2017-11-14 09:45:28,646 [DEBUG] who? ref0506750.1e5 ref0506750.1e3 2017-11-14 09:45:28,646 [DEBUG] Grabbing contig between nodes ref0506750.1e5 & ref0506750.1e3 - [trim 0, 0] 2017-11-14 09:45:28,646 [DEBUG] contig 2441 to 6146 2017-11-14 09:45:28,646 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,647 [DEBUG] Moving from ref0506750.1e5 to ref0506750.0e3 (p=1) 2017-11-14 09:45:28,647 [DEBUG] unimproved gap 2017-11-14 09:45:28,647 [DEBUG] Moving from ref0506750.0e3 to ref0506750e5 (p=1) 2017-11-14 09:45:28,647 [DEBUG] contig 2017-11-14 09:45:28,647 [DEBUG] who? ref0506750e5 ref0506750.0e3 2017-11-14 09:45:28,647 [DEBUG] Grabbing contig between nodes ref0506750e5 & ref0506750.0e3 - [trim 0, 0] 2017-11-14 09:45:28,647 [DEBUG] contig 0 to 2387 2017-11-14 09:45:28,647 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,647 [DEBUG] FirstFlipping 90 2017-11-14 09:45:28,648 [DEBUG] Contig 91 2017-11-14 09:45:28,650 [DEBUG] Moving from ref0443019e5 to ref0443019.0e3 (p=1) 2017-11-14 09:45:28,650 [DEBUG] contig 2017-11-14 09:45:28,650 [DEBUG] who? ref0443019e5 ref0443019.0e3 2017-11-14 09:45:28,650 [DEBUG] Grabbing contig between nodes ref0443019e5 & ref0443019.0e3 - [trim 0, 0] 2017-11-14 09:45:28,650 [DEBUG] contig 0 to 1537 2017-11-14 09:45:28,650 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,650 [DEBUG] Moving from ref0443019.0e3 to ref0443019.1e5 (p=1) 2017-11-14 09:45:28,650 [DEBUG] unimproved gap 2017-11-14 09:45:28,650 [DEBUG] Moving from ref0443019.1e5 to ref0443019.1e3 (p=1) 2017-11-14 09:45:28,650 [DEBUG] contig 2017-11-14 09:45:28,650 [DEBUG] who? ref0443019.1e5 ref0443019.1e3 2017-11-14 09:45:28,650 [DEBUG] Grabbing contig between nodes ref0443019.1e5 & ref0443019.1e3 - [trim 0, 0] 2017-11-14 09:45:28,651 [DEBUG] contig 1773 to 2159 2017-11-14 09:45:28,651 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,651 [DEBUG] Moving from ref0443019.1e3 to ref0443019.2e5 (p=1) 2017-11-14 09:45:28,651 [DEBUG] unimproved gap 2017-11-14 09:45:28,651 [DEBUG] Moving from ref0443019.2e5 to ref0443019.2e3 (p=1) 2017-11-14 09:45:28,651 [DEBUG] contig 2017-11-14 09:45:28,651 [DEBUG] who? ref0443019.2e5 ref0443019.2e3 2017-11-14 09:45:28,651 [DEBUG] Grabbing contig between nodes ref0443019.2e5 & ref0443019.2e3 - [trim 0, 0] 2017-11-14 09:45:28,651 [DEBUG] contig 2729 to 2770 2017-11-14 09:45:28,651 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,651 [DEBUG] Moving from ref0443019.2e3 to ref0443019.3e5 (p=1) 2017-11-14 09:45:28,651 [DEBUG] unimproved gap 2017-11-14 09:45:28,651 [DEBUG] Moving from ref0443019.3e5 to ref0443019.3e3 (p=1) 2017-11-14 09:45:28,652 [DEBUG] contig 2017-11-14 09:45:28,652 [DEBUG] who? ref0443019.3e5 ref0443019.3e3 2017-11-14 09:45:28,652 [DEBUG] Grabbing contig between nodes ref0443019.3e5 & ref0443019.3e3 - [trim 0, 0] 2017-11-14 09:45:28,652 [DEBUG] contig 3308 to 3422 2017-11-14 09:45:28,652 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,652 [DEBUG] Moving from ref0443019.3e3 to ref0443019.4e5 (p=1) 2017-11-14 09:45:28,652 [DEBUG] unimproved gap 2017-11-14 09:45:28,652 [DEBUG] Moving from ref0443019.4e5 to ref0443019.4e3 (p=1) 2017-11-14 09:45:28,652 [DEBUG] contig 2017-11-14 09:45:28,652 [DEBUG] who? ref0443019.4e5 ref0443019.4e3 2017-11-14 09:45:28,652 [DEBUG] Grabbing contig between nodes ref0443019.4e5 & ref0443019.4e3 - [trim 0, 0] 2017-11-14 09:45:28,652 [DEBUG] contig 3709 to 4160 2017-11-14 09:45:28,653 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,653 [DEBUG] Moving from ref0443019.4e3 to ref0443019.5e5 (p=1) 2017-11-14 09:45:28,653 [DEBUG] unimproved gap 2017-11-14 09:45:28,653 [DEBUG] Moving from ref0443019.5e5 to ref0443019.5e3 (p=1) 2017-11-14 09:45:28,653 [DEBUG] contig 2017-11-14 09:45:28,653 [DEBUG] who? ref0443019.5e5 ref0443019.5e3 2017-11-14 09:45:28,653 [DEBUG] Grabbing contig between nodes ref0443019.5e5 & ref0443019.5e3 - [trim 0, 0] 2017-11-14 09:45:28,653 [DEBUG] contig 4486 to 7065 2017-11-14 09:45:28,653 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,653 [DEBUG] Moving from ref0443019.5e3 to ref0443019.6e5 (p=1) 2017-11-14 09:45:28,653 [DEBUG] unimproved gap 2017-11-14 09:45:28,653 [DEBUG] Moving from ref0443019.6e5 to ref0443019.6e3 (p=1) 2017-11-14 09:45:28,653 [DEBUG] contig 2017-11-14 09:45:28,654 [DEBUG] who? ref0443019.6e5 ref0443019.6e3 2017-11-14 09:45:28,654 [DEBUG] Grabbing contig between nodes ref0443019.6e5 & ref0443019.6e3 - [trim 0, 0] 2017-11-14 09:45:28,654 [DEBUG] contig 7212 to 8434 2017-11-14 09:45:28,654 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,654 [DEBUG] Moving from ref0443019.6e3 to ref0443019.7e5 (p=1) 2017-11-14 09:45:28,654 [DEBUG] unimproved gap 2017-11-14 09:45:28,654 [DEBUG] Moving from ref0443019.7e5 to ref0443019.7e3 (p=1) 2017-11-14 09:45:28,654 [DEBUG] contig 2017-11-14 09:45:28,654 [DEBUG] who? ref0443019.7e5 ref0443019.7e3 2017-11-14 09:45:28,654 [DEBUG] Grabbing contig between nodes ref0443019.7e5 & ref0443019.7e3 - [trim 0, 0] 2017-11-14 09:45:28,654 [DEBUG] contig 8569 to 8635 2017-11-14 09:45:28,654 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,654 [DEBUG] Moving from ref0443019.7e3 to ref0443019.8e5 (p=1) 2017-11-14 09:45:28,654 [DEBUG] unimproved gap 2017-11-14 09:45:28,655 [DEBUG] Moving from ref0443019.8e5 to ref0443019.8e3 (p=1) 2017-11-14 09:45:28,655 [DEBUG] contig 2017-11-14 09:45:28,655 [DEBUG] who? ref0443019.8e5 ref0443019.8e3 2017-11-14 09:45:28,655 [DEBUG] Grabbing contig between nodes ref0443019.8e5 & ref0443019.8e3 - [trim 0, 0] 2017-11-14 09:45:28,655 [DEBUG] contig 8975 to 9177 2017-11-14 09:45:28,655 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,655 [DEBUG] Moving from ref0443019.8e3 to ref0443019.9e5 (p=1) 2017-11-14 09:45:28,655 [DEBUG] unimproved gap 2017-11-14 09:45:28,655 [DEBUG] Moving from ref0443019.9e5 to ref0443019.9e3 (p=1) 2017-11-14 09:45:28,655 [DEBUG] contig 2017-11-14 09:45:28,655 [DEBUG] who? ref0443019.9e5 ref0443019.9e3 2017-11-14 09:45:28,655 [DEBUG] Grabbing contig between nodes ref0443019.9e5 & ref0443019.9e3 - [trim 0, 0] 2017-11-14 09:45:28,655 [DEBUG] contig 9413 to 9455 2017-11-14 09:45:28,656 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,656 [DEBUG] Moving from ref0443019.9e3 to ref0443019.10e5 (p=1) 2017-11-14 09:45:28,656 [DEBUG] unimproved gap 2017-11-14 09:45:28,656 [DEBUG] Moving from ref0443019.10e5 to ref0443019.10e3 (p=1) 2017-11-14 09:45:28,656 [DEBUG] contig 2017-11-14 09:45:28,656 [DEBUG] who? ref0443019.10e5 ref0443019.10e3 2017-11-14 09:45:28,656 [DEBUG] Grabbing contig between nodes ref0443019.10e5 & ref0443019.10e3 - [trim 0, 0] 2017-11-14 09:45:28,656 [DEBUG] contig 9751 to 11275 2017-11-14 09:45:28,656 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,656 [DEBUG] Moving from ref0443019.10e3 to ref0443019.11e5 (p=1) 2017-11-14 09:45:28,656 [DEBUG] unimproved gap 2017-11-14 09:45:28,656 [DEBUG] Moving from ref0443019.11e5 to ref0443019.11e3 (p=1) 2017-11-14 09:45:28,656 [DEBUG] contig 2017-11-14 09:45:28,657 [DEBUG] who? ref0443019.11e5 ref0443019.11e3 2017-11-14 09:45:28,657 [DEBUG] Grabbing contig between nodes ref0443019.11e5 & ref0443019.11e3 - [trim 0, 0] 2017-11-14 09:45:28,657 [DEBUG] contig 11575 to 12650 2017-11-14 09:45:28,657 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,657 [DEBUG] Moving from ref0443019.11e3 to ref0443019.12e5 (p=1) 2017-11-14 09:45:28,657 [DEBUG] unimproved gap 2017-11-14 09:45:28,657 [DEBUG] Moving from ref0443019.12e5 to ref0443019.12e3 (p=1) 2017-11-14 09:45:28,657 [DEBUG] contig 2017-11-14 09:45:28,657 [DEBUG] who? ref0443019.12e5 ref0443019.12e3 2017-11-14 09:45:28,657 [DEBUG] Grabbing contig between nodes ref0443019.12e5 & ref0443019.12e3 - [trim 0, 0] 2017-11-14 09:45:28,657 [DEBUG] contig 12866 to 13007 2017-11-14 09:45:28,657 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,657 [DEBUG] Moving from ref0443019.12e3 to ref0443019.13e5 (p=1) 2017-11-14 09:45:28,657 [DEBUG] unimproved gap 2017-11-14 09:45:28,658 [DEBUG] Moving from ref0443019.13e5 to ref0443019.13e3 (p=1) 2017-11-14 09:45:28,658 [DEBUG] contig 2017-11-14 09:45:28,658 [DEBUG] who? ref0443019.13e5 ref0443019.13e3 2017-11-14 09:45:28,658 [DEBUG] Grabbing contig between nodes ref0443019.13e5 & ref0443019.13e3 - [trim 0, 0] 2017-11-14 09:45:28,658 [DEBUG] contig 13111 to 13152 2017-11-14 09:45:28,658 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,658 [DEBUG] Moving from ref0443019.13e3 to ref0443019.14e5 (p=1) 2017-11-14 09:45:28,658 [DEBUG] unimproved gap 2017-11-14 09:45:28,658 [DEBUG] Moving from ref0443019.14e5 to ref0443019.14e3 (p=1) 2017-11-14 09:45:28,658 [DEBUG] contig 2017-11-14 09:45:28,658 [DEBUG] who? ref0443019.14e5 ref0443019.14e3 2017-11-14 09:45:28,658 [DEBUG] Grabbing contig between nodes ref0443019.14e5 & ref0443019.14e3 - [trim 0, 0] 2017-11-14 09:45:28,658 [DEBUG] contig 13481 to 13670 2017-11-14 09:45:28,659 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,659 [DEBUG] Moving from ref0443019.14e3 to ref0443019.15e5 (p=1) 2017-11-14 09:45:28,659 [DEBUG] unimproved gap 2017-11-14 09:45:28,659 [DEBUG] Moving from ref0443019.15e5 to ref0443019.15e3 (p=1) 2017-11-14 09:45:28,659 [DEBUG] contig 2017-11-14 09:45:28,659 [DEBUG] who? ref0443019.15e5 ref0443019.15e3 2017-11-14 09:45:28,659 [DEBUG] Grabbing contig between nodes ref0443019.15e5 & ref0443019.15e3 - [trim 0, 0] 2017-11-14 09:45:28,659 [DEBUG] contig 13877 to 14460 2017-11-14 09:45:28,659 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,659 [DEBUG] Moving from ref0443019.15e3 to ref0443019.16e5 (p=1) 2017-11-14 09:45:28,659 [DEBUG] unimproved gap 2017-11-14 09:45:28,659 [DEBUG] Moving from ref0443019.16e5 to ref0443019.16e3 (p=1) 2017-11-14 09:45:28,660 [DEBUG] contig 2017-11-14 09:45:28,660 [DEBUG] who? ref0443019.16e5 ref0443019.16e3 2017-11-14 09:45:28,660 [DEBUG] Grabbing contig between nodes ref0443019.16e5 & ref0443019.16e3 - [trim 0, 0] 2017-11-14 09:45:28,660 [DEBUG] contig 14673 to 14863 2017-11-14 09:45:28,660 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,660 [DEBUG] Moving from ref0443019.16e3 to ref0443019.17e5 (p=1) 2017-11-14 09:45:28,660 [DEBUG] unimproved gap 2017-11-14 09:45:28,660 [DEBUG] Moving from ref0443019.17e5 to ref0443019e3 (p=1) 2017-11-14 09:45:28,660 [DEBUG] contig 2017-11-14 09:45:28,660 [DEBUG] who? ref0443019.17e5 ref0443019e3 2017-11-14 09:45:28,660 [DEBUG] Grabbing contig between nodes ref0443019.17e5 & ref0443019e3 - [trim 0, 0] 2017-11-14 09:45:28,660 [DEBUG] contig 15076 to 15383 2017-11-14 09:45:28,660 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,661 [DEBUG] Contig 92 2017-11-14 09:45:28,663 [DEBUG] Moving from ref0426184e5 to ref0426184.0e3 (p=1) 2017-11-14 09:45:28,663 [DEBUG] contig 2017-11-14 09:45:28,663 [DEBUG] who? ref0426184e5 ref0426184.0e3 2017-11-14 09:45:28,663 [DEBUG] Grabbing contig between nodes ref0426184e5 & ref0426184.0e3 - [trim 0, 0] 2017-11-14 09:45:28,663 [DEBUG] contig 0 to 238 2017-11-14 09:45:28,663 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,663 [DEBUG] Moving from ref0426184.0e3 to ref0426184.1e5 (p=1) 2017-11-14 09:45:28,663 [DEBUG] unimproved gap 2017-11-14 09:45:28,663 [DEBUG] Moving from ref0426184.1e5 to ref0426184.1e3 (p=1) 2017-11-14 09:45:28,663 [DEBUG] contig 2017-11-14 09:45:28,663 [DEBUG] who? ref0426184.1e5 ref0426184.1e3 2017-11-14 09:45:28,663 [DEBUG] Grabbing contig between nodes ref0426184.1e5 & ref0426184.1e3 - [trim 0, 0] 2017-11-14 09:45:28,663 [DEBUG] contig 560 to 1493 2017-11-14 09:45:28,663 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,664 [DEBUG] Moving from ref0426184.1e3 to ref0426184.2e5 (p=1) 2017-11-14 09:45:28,664 [DEBUG] unimproved gap 2017-11-14 09:45:28,664 [DEBUG] Moving from ref0426184.2e5 to ref0426184.2e3 (p=1) 2017-11-14 09:45:28,664 [DEBUG] contig 2017-11-14 09:45:28,664 [DEBUG] who? ref0426184.2e5 ref0426184.2e3 2017-11-14 09:45:28,664 [DEBUG] Grabbing contig between nodes ref0426184.2e5 & ref0426184.2e3 - [trim 0, 0] 2017-11-14 09:45:28,664 [DEBUG] contig 1797 to 4228 2017-11-14 09:45:28,664 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,664 [DEBUG] Moving from ref0426184.2e3 to ref0426184.3e5 (p=1) 2017-11-14 09:45:28,664 [DEBUG] unimproved gap 2017-11-14 09:45:28,664 [DEBUG] Moving from ref0426184.3e5 to ref0426184.3e3 (p=1) 2017-11-14 09:45:28,664 [DEBUG] contig 2017-11-14 09:45:28,664 [DEBUG] who? ref0426184.3e5 ref0426184.3e3 2017-11-14 09:45:28,665 [DEBUG] Grabbing contig between nodes ref0426184.3e5 & ref0426184.3e3 - [trim 0, 0] 2017-11-14 09:45:28,665 [DEBUG] contig 4591 to 11974 2017-11-14 09:45:28,665 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,665 [DEBUG] Moving from ref0426184.3e3 to ref0426184.4e5 (p=1) 2017-11-14 09:45:28,665 [DEBUG] unimproved gap 2017-11-14 09:45:28,665 [DEBUG] Moving from ref0426184.4e5 to ref0426184.4e3 (p=1) 2017-11-14 09:45:28,665 [DEBUG] contig 2017-11-14 09:45:28,665 [DEBUG] who? ref0426184.4e5 ref0426184.4e3 2017-11-14 09:45:28,665 [DEBUG] Grabbing contig between nodes ref0426184.4e5 & ref0426184.4e3 - [trim 0, 0] 2017-11-14 09:45:28,665 [DEBUG] contig 12060 to 15480 2017-11-14 09:45:28,665 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,665 [DEBUG] Moving from ref0426184.4e3 to ref0426184.5e5 (p=1) 2017-11-14 09:45:28,665 [DEBUG] unimproved gap 2017-11-14 09:45:28,666 [DEBUG] Moving from ref0426184.5e5 to ref0426184.5e3 (p=1) 2017-11-14 09:45:28,666 [DEBUG] contig 2017-11-14 09:45:28,666 [DEBUG] who? ref0426184.5e5 ref0426184.5e3 2017-11-14 09:45:28,666 [DEBUG] Grabbing contig between nodes ref0426184.5e5 & ref0426184.5e3 - [trim 0, 0] 2017-11-14 09:45:28,666 [DEBUG] contig 15793 to 16354 2017-11-14 09:45:28,666 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,666 [DEBUG] Moving from ref0426184.5e3 to ref0426184.6e5 (p=1) 2017-11-14 09:45:28,666 [DEBUG] unimproved gap 2017-11-14 09:45:28,666 [DEBUG] Moving from ref0426184.6e5 to ref0426184.6e3 (p=1) 2017-11-14 09:45:28,666 [DEBUG] contig 2017-11-14 09:45:28,666 [DEBUG] who? ref0426184.6e5 ref0426184.6e3 2017-11-14 09:45:28,666 [DEBUG] Grabbing contig between nodes ref0426184.6e5 & ref0426184.6e3 - [trim 0, 0] 2017-11-14 09:45:28,666 [DEBUG] contig 16786 to 18379 2017-11-14 09:45:28,667 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,667 [DEBUG] Moving from ref0426184.6e3 to ref0426184.7e5 (p=1) 2017-11-14 09:45:28,667 [DEBUG] unimproved gap 2017-11-14 09:45:28,667 [DEBUG] Moving from ref0426184.7e5 to ref0426184.7e3 (p=1) 2017-11-14 09:45:28,667 [DEBUG] contig 2017-11-14 09:45:28,667 [DEBUG] who? ref0426184.7e5 ref0426184.7e3 2017-11-14 09:45:28,667 [DEBUG] Grabbing contig between nodes ref0426184.7e5 & ref0426184.7e3 - [trim 0, 0] 2017-11-14 09:45:28,667 [DEBUG] contig 18492 to 18585 2017-11-14 09:45:28,667 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,667 [DEBUG] Moving from ref0426184.7e3 to ref0426184.8e5 (p=1) 2017-11-14 09:45:28,667 [DEBUG] unimproved gap 2017-11-14 09:45:28,667 [DEBUG] Moving from ref0426184.8e5 to ref0426184.8e3 (p=1) 2017-11-14 09:45:28,667 [DEBUG] contig 2017-11-14 09:45:28,668 [DEBUG] who? ref0426184.8e5 ref0426184.8e3 2017-11-14 09:45:28,668 [DEBUG] Grabbing contig between nodes ref0426184.8e5 & ref0426184.8e3 - [trim 0, 0] 2017-11-14 09:45:28,668 [DEBUG] contig 18642 to 22933 2017-11-14 09:45:28,668 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,668 [DEBUG] Moving from ref0426184.8e3 to ref0426184.9e5 (p=1) 2017-11-14 09:45:28,668 [DEBUG] unimproved gap 2017-11-14 09:45:28,668 [DEBUG] Moving from ref0426184.9e5 to ref0426184.9e3 (p=1) 2017-11-14 09:45:28,668 [DEBUG] contig 2017-11-14 09:45:28,668 [DEBUG] who? ref0426184.9e5 ref0426184.9e3 2017-11-14 09:45:28,668 [DEBUG] Grabbing contig between nodes ref0426184.9e5 & ref0426184.9e3 - [trim 0, 0] 2017-11-14 09:45:28,668 [DEBUG] contig 23021 to 25843 2017-11-14 09:45:28,668 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,669 [DEBUG] Moving from ref0426184.9e3 to ref0426184.10e5 (p=1) 2017-11-14 09:45:28,669 [DEBUG] unimproved gap 2017-11-14 09:45:28,669 [DEBUG] Moving from ref0426184.10e5 to ref0426184.10e3 (p=1) 2017-11-14 09:45:28,669 [DEBUG] contig 2017-11-14 09:45:28,669 [DEBUG] who? ref0426184.10e5 ref0426184.10e3 2017-11-14 09:45:28,669 [DEBUG] Grabbing contig between nodes ref0426184.10e5 & ref0426184.10e3 - [trim 0, 0] 2017-11-14 09:45:28,669 [DEBUG] contig 26115 to 26170 2017-11-14 09:45:28,669 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,669 [DEBUG] Moving from ref0426184.10e3 to ref0426184.11e5 (p=1) 2017-11-14 09:45:28,669 [DEBUG] unimproved gap 2017-11-14 09:45:28,669 [DEBUG] Moving from ref0426184.11e5 to ref0426184.11e3 (p=1) 2017-11-14 09:45:28,669 [DEBUG] contig 2017-11-14 09:45:28,669 [DEBUG] who? ref0426184.11e5 ref0426184.11e3 2017-11-14 09:45:28,669 [DEBUG] Grabbing contig between nodes ref0426184.11e5 & ref0426184.11e3 - [trim 0, 0] 2017-11-14 09:45:28,670 [DEBUG] contig 26328 to 26556 2017-11-14 09:45:28,670 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,670 [DEBUG] Moving from ref0426184.11e3 to ref0426184.12e5 (p=1) 2017-11-14 09:45:28,670 [DEBUG] unimproved gap 2017-11-14 09:45:28,670 [DEBUG] Moving from ref0426184.12e5 to ref0426184.12e3 (p=1) 2017-11-14 09:45:28,670 [DEBUG] contig 2017-11-14 09:45:28,670 [DEBUG] who? ref0426184.12e5 ref0426184.12e3 2017-11-14 09:45:28,670 [DEBUG] Grabbing contig between nodes ref0426184.12e5 & ref0426184.12e3 - [trim 0, 0] 2017-11-14 09:45:28,670 [DEBUG] contig 26744 to 26780 2017-11-14 09:45:28,670 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,670 [DEBUG] Moving from ref0426184.12e3 to ref0426184.13e5 (p=1) 2017-11-14 09:45:28,670 [DEBUG] unimproved gap 2017-11-14 09:45:28,670 [DEBUG] Moving from ref0426184.13e5 to ref0426184.13e3 (p=1) 2017-11-14 09:45:28,671 [DEBUG] contig 2017-11-14 09:45:28,671 [DEBUG] who? ref0426184.13e5 ref0426184.13e3 2017-11-14 09:45:28,671 [DEBUG] Grabbing contig between nodes ref0426184.13e5 & ref0426184.13e3 - [trim 0, 0] 2017-11-14 09:45:28,671 [DEBUG] contig 27008 to 29379 2017-11-14 09:45:28,671 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,671 [DEBUG] Moving from ref0426184.13e3 to ref0426184.14e5 (p=1) 2017-11-14 09:45:28,671 [DEBUG] unimproved gap 2017-11-14 09:45:28,671 [DEBUG] Moving from ref0426184.14e5 to ref0426184.14e3 (p=1) 2017-11-14 09:45:28,671 [DEBUG] contig 2017-11-14 09:45:28,671 [DEBUG] who? ref0426184.14e5 ref0426184.14e3 2017-11-14 09:45:28,671 [DEBUG] Grabbing contig between nodes ref0426184.14e5 & ref0426184.14e3 - [trim 0, 0] 2017-11-14 09:45:28,671 [DEBUG] contig 29528 to 30165 2017-11-14 09:45:28,671 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,671 [DEBUG] Moving from ref0426184.14e3 to ref0426184.15e5 (p=1) 2017-11-14 09:45:28,672 [DEBUG] unimproved gap 2017-11-14 09:45:28,672 [DEBUG] Moving from ref0426184.15e5 to ref0426184.15e3 (p=1) 2017-11-14 09:45:28,672 [DEBUG] contig 2017-11-14 09:45:28,672 [DEBUG] who? ref0426184.15e5 ref0426184.15e3 2017-11-14 09:45:28,672 [DEBUG] Grabbing contig between nodes ref0426184.15e5 & ref0426184.15e3 - [trim 0, 0] 2017-11-14 09:45:28,672 [DEBUG] contig 30494 to 30710 2017-11-14 09:45:28,672 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,672 [DEBUG] Moving from ref0426184.15e3 to ref0426184.16e5 (p=1) 2017-11-14 09:45:28,672 [DEBUG] unimproved gap 2017-11-14 09:45:28,672 [DEBUG] Moving from ref0426184.16e5 to ref0426184.16e3 (p=1) 2017-11-14 09:45:28,672 [DEBUG] contig 2017-11-14 09:45:28,672 [DEBUG] who? ref0426184.16e5 ref0426184.16e3 2017-11-14 09:45:28,672 [DEBUG] Grabbing contig between nodes ref0426184.16e5 & ref0426184.16e3 - [trim 0, 0] 2017-11-14 09:45:28,673 [DEBUG] contig 30985 to 31505 2017-11-14 09:45:28,673 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,673 [DEBUG] Moving from ref0426184.16e3 to ref0426184.17e5 (p=1) 2017-11-14 09:45:28,673 [DEBUG] unimproved gap 2017-11-14 09:45:28,673 [DEBUG] Moving from ref0426184.17e5 to ref0426184e3 (p=1) 2017-11-14 09:45:28,673 [DEBUG] contig 2017-11-14 09:45:28,673 [DEBUG] who? ref0426184.17e5 ref0426184e3 2017-11-14 09:45:28,673 [DEBUG] Grabbing contig between nodes ref0426184.17e5 & ref0426184e3 - [trim 0, 0] 2017-11-14 09:45:28,673 [DEBUG] contig 31591 to 40735 2017-11-14 09:45:28,673 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,674 [DEBUG] Contig 93 2017-11-14 09:45:28,675 [DEBUG] Moving from ref0505257e3 to ref0505257.17e5 (p=1) 2017-11-14 09:45:28,676 [DEBUG] contig 2017-11-14 09:45:28,676 [DEBUG] who? ref0505257.17e5 ref0505257e3 2017-11-14 09:45:28,676 [DEBUG] Grabbing contig between nodes ref0505257.17e5 & ref0505257e3 - [trim 0, 0] 2017-11-14 09:45:28,676 [DEBUG] contig 29924 to 30080 2017-11-14 09:45:28,676 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,676 [DEBUG] Moving from ref0505257.17e5 to ref0505257.16e3 (p=1) 2017-11-14 09:45:28,676 [DEBUG] unimproved gap 2017-11-14 09:45:28,676 [DEBUG] Moving from ref0505257.16e3 to ref0505257.16e5 (p=1) 2017-11-14 09:45:28,676 [DEBUG] contig 2017-11-14 09:45:28,676 [DEBUG] who? ref0505257.16e5 ref0505257.16e3 2017-11-14 09:45:28,676 [DEBUG] Grabbing contig between nodes ref0505257.16e5 & ref0505257.16e3 - [trim 0, 0] 2017-11-14 09:45:28,676 [DEBUG] contig 29537 to 29667 2017-11-14 09:45:28,676 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,677 [DEBUG] Moving from ref0505257.16e5 to ref0505257.15e3 (p=1) 2017-11-14 09:45:28,677 [DEBUG] unimproved gap 2017-11-14 09:45:28,677 [DEBUG] Moving from ref0505257.15e3 to ref0505257.15e5 (p=1) 2017-11-14 09:45:28,677 [DEBUG] contig 2017-11-14 09:45:28,677 [DEBUG] who? ref0505257.15e5 ref0505257.15e3 2017-11-14 09:45:28,677 [DEBUG] Grabbing contig between nodes ref0505257.15e5 & ref0505257.15e3 - [trim 0, 0] 2017-11-14 09:45:28,677 [DEBUG] contig 29136 to 29297 2017-11-14 09:45:28,677 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,677 [DEBUG] Moving from ref0505257.15e5 to ref0505257.14e3 (p=1) 2017-11-14 09:45:28,677 [DEBUG] unimproved gap 2017-11-14 09:45:28,677 [DEBUG] Moving from ref0505257.14e3 to ref0505257.14e5 (p=1) 2017-11-14 09:45:28,677 [DEBUG] contig 2017-11-14 09:45:28,678 [DEBUG] who? ref0505257.14e5 ref0505257.14e3 2017-11-14 09:45:28,678 [DEBUG] Grabbing contig between nodes ref0505257.14e5 & ref0505257.14e3 - [trim 0, 0] 2017-11-14 09:45:28,678 [DEBUG] contig 27408 to 28908 2017-11-14 09:45:28,678 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,678 [DEBUG] Moving from ref0505257.14e5 to ref0505257.13e3 (p=1) 2017-11-14 09:45:28,678 [DEBUG] unimproved gap 2017-11-14 09:45:28,678 [DEBUG] Moving from ref0505257.13e3 to ref0505257.13e5 (p=1) 2017-11-14 09:45:28,678 [DEBUG] contig 2017-11-14 09:45:28,678 [DEBUG] who? ref0505257.13e5 ref0505257.13e3 2017-11-14 09:45:28,678 [DEBUG] Grabbing contig between nodes ref0505257.13e5 & ref0505257.13e3 - [trim 0, 0] 2017-11-14 09:45:28,678 [DEBUG] contig 26788 to 27362 2017-11-14 09:45:28,678 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,678 [DEBUG] Moving from ref0505257.13e5 to ref0505257.12e3 (p=1) 2017-11-14 09:45:28,679 [DEBUG] unimproved gap 2017-11-14 09:45:28,679 [DEBUG] Moving from ref0505257.12e3 to ref0505257.12e5 (p=1) 2017-11-14 09:45:28,679 [DEBUG] contig 2017-11-14 09:45:28,679 [DEBUG] who? ref0505257.12e5 ref0505257.12e3 2017-11-14 09:45:28,679 [DEBUG] Grabbing contig between nodes ref0505257.12e5 & ref0505257.12e3 - [trim 0, 0] 2017-11-14 09:45:28,679 [DEBUG] contig 26493 to 26544 2017-11-14 09:45:28,679 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,679 [DEBUG] Moving from ref0505257.12e5 to ref0505257.11e3 (p=1) 2017-11-14 09:45:28,679 [DEBUG] unimproved gap 2017-11-14 09:45:28,679 [DEBUG] Moving from ref0505257.11e3 to ref0505257.11e5 (p=1) 2017-11-14 09:45:28,679 [DEBUG] contig 2017-11-14 09:45:28,679 [DEBUG] who? ref0505257.11e5 ref0505257.11e3 2017-11-14 09:45:28,679 [DEBUG] Grabbing contig between nodes ref0505257.11e5 & ref0505257.11e3 - [trim 0, 0] 2017-11-14 09:45:28,680 [DEBUG] contig 26327 to 26359 2017-11-14 09:45:28,680 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,680 [DEBUG] Moving from ref0505257.11e5 to ref0505257.10e3 (p=1) 2017-11-14 09:45:28,680 [DEBUG] unimproved gap 2017-11-14 09:45:28,680 [DEBUG] Moving from ref0505257.10e3 to ref0505257.10e5 (p=1) 2017-11-14 09:45:28,680 [DEBUG] contig 2017-11-14 09:45:28,680 [DEBUG] who? ref0505257.10e5 ref0505257.10e3 2017-11-14 09:45:28,680 [DEBUG] Grabbing contig between nodes ref0505257.10e5 & ref0505257.10e3 - [trim 0, 0] 2017-11-14 09:45:28,680 [DEBUG] contig 26069 to 26120 2017-11-14 09:45:28,680 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,680 [DEBUG] Moving from ref0505257.10e5 to ref0505257.9e3 (p=1) 2017-11-14 09:45:28,680 [DEBUG] unimproved gap 2017-11-14 09:45:28,680 [DEBUG] Moving from ref0505257.9e3 to ref0505257.9e5 (p=1) 2017-11-14 09:45:28,681 [DEBUG] contig 2017-11-14 09:45:28,681 [DEBUG] who? ref0505257.9e5 ref0505257.9e3 2017-11-14 09:45:28,681 [DEBUG] Grabbing contig between nodes ref0505257.9e5 & ref0505257.9e3 - [trim 0, 0] 2017-11-14 09:45:28,681 [DEBUG] contig 24840 to 25877 2017-11-14 09:45:28,681 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,681 [DEBUG] Moving from ref0505257.9e5 to ref0505257.8e3 (p=1) 2017-11-14 09:45:28,681 [DEBUG] unimproved gap 2017-11-14 09:45:28,681 [DEBUG] Moving from ref0505257.8e3 to ref0505257.8e5 (p=1) 2017-11-14 09:45:28,681 [DEBUG] contig 2017-11-14 09:45:28,681 [DEBUG] who? ref0505257.8e5 ref0505257.8e3 2017-11-14 09:45:28,681 [DEBUG] Grabbing contig between nodes ref0505257.8e5 & ref0505257.8e3 - [trim 0, 0] 2017-11-14 09:45:28,681 [DEBUG] contig 24312 to 24750 2017-11-14 09:45:28,681 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,681 [DEBUG] Moving from ref0505257.8e5 to ref0505257.7e3 (p=1) 2017-11-14 09:45:28,682 [DEBUG] unimproved gap 2017-11-14 09:45:28,682 [DEBUG] Moving from ref0505257.7e3 to ref0505257.7e5 (p=1) 2017-11-14 09:45:28,682 [DEBUG] contig 2017-11-14 09:45:28,682 [DEBUG] who? ref0505257.7e5 ref0505257.7e3 2017-11-14 09:45:28,682 [DEBUG] Grabbing contig between nodes ref0505257.7e5 & ref0505257.7e3 - [trim 0, 0] 2017-11-14 09:45:28,682 [DEBUG] contig 24087 to 24119 2017-11-14 09:45:28,682 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,682 [DEBUG] Moving from ref0505257.7e5 to ref0505257.6e3 (p=1) 2017-11-14 09:45:28,682 [DEBUG] unimproved gap 2017-11-14 09:45:28,682 [DEBUG] Moving from ref0505257.6e3 to ref0505257.6e5 (p=1) 2017-11-14 09:45:28,682 [DEBUG] contig 2017-11-14 09:45:28,682 [DEBUG] who? ref0505257.6e5 ref0505257.6e3 2017-11-14 09:45:28,682 [DEBUG] Grabbing contig between nodes ref0505257.6e5 & ref0505257.6e3 - [trim 0, 0] 2017-11-14 09:45:28,683 [DEBUG] contig 22863 to 23941 2017-11-14 09:45:28,683 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,683 [DEBUG] Moving from ref0505257.6e5 to ref0505257.5e3 (p=1) 2017-11-14 09:45:28,683 [DEBUG] unimproved gap 2017-11-14 09:45:28,683 [DEBUG] Moving from ref0505257.5e3 to ref0505257.5e5 (p=1) 2017-11-14 09:45:28,683 [DEBUG] contig 2017-11-14 09:45:28,683 [DEBUG] who? ref0505257.5e5 ref0505257.5e3 2017-11-14 09:45:28,683 [DEBUG] Grabbing contig between nodes ref0505257.5e5 & ref0505257.5e3 - [trim 0, 0] 2017-11-14 09:45:28,683 [DEBUG] contig 19016 to 22520 2017-11-14 09:45:28,683 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,683 [DEBUG] Moving from ref0505257.5e5 to ref0505257.4e3 (p=1) 2017-11-14 09:45:28,683 [DEBUG] unimproved gap 2017-11-14 09:45:28,683 [DEBUG] Moving from ref0505257.4e3 to ref0505257.4e5 (p=1) 2017-11-14 09:45:28,683 [DEBUG] contig 2017-11-14 09:45:28,684 [DEBUG] who? ref0505257.4e5 ref0505257.4e3 2017-11-14 09:45:28,684 [DEBUG] Grabbing contig between nodes ref0505257.4e5 & ref0505257.4e3 - [trim 0, 0] 2017-11-14 09:45:28,684 [DEBUG] contig 14464 to 18695 2017-11-14 09:45:28,684 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,684 [DEBUG] Moving from ref0505257.4e5 to ref0505257.3e3 (p=1) 2017-11-14 09:45:28,684 [DEBUG] unimproved gap 2017-11-14 09:45:28,684 [DEBUG] Moving from ref0505257.3e3 to ref0505257.3e5 (p=1) 2017-11-14 09:45:28,684 [DEBUG] contig 2017-11-14 09:45:28,684 [DEBUG] who? ref0505257.3e5 ref0505257.3e3 2017-11-14 09:45:28,684 [DEBUG] Grabbing contig between nodes ref0505257.3e5 & ref0505257.3e3 - [trim 0, 0] 2017-11-14 09:45:28,684 [DEBUG] contig 13573 to 14369 2017-11-14 09:45:28,684 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,685 [DEBUG] Moving from ref0505257.3e5 to ref0505257.2e3 (p=1) 2017-11-14 09:45:28,685 [DEBUG] unimproved gap 2017-11-14 09:45:28,685 [DEBUG] Moving from ref0505257.2e3 to ref0505257.2e5 (p=1) 2017-11-14 09:45:28,685 [DEBUG] contig 2017-11-14 09:45:28,685 [DEBUG] who? ref0505257.2e5 ref0505257.2e3 2017-11-14 09:45:28,685 [DEBUG] Grabbing contig between nodes ref0505257.2e5 & ref0505257.2e3 - [trim 0, 0] 2017-11-14 09:45:28,685 [DEBUG] contig 9512 to 13400 2017-11-14 09:45:28,685 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,685 [DEBUG] Moving from ref0505257.2e5 to ref0505257.1e3 (p=1) 2017-11-14 09:45:28,685 [DEBUG] unimproved gap 2017-11-14 09:45:28,685 [DEBUG] Moving from ref0505257.1e3 to ref0505257.1e5 (p=1) 2017-11-14 09:45:28,685 [DEBUG] contig 2017-11-14 09:45:28,685 [DEBUG] who? ref0505257.1e5 ref0505257.1e3 2017-11-14 09:45:28,685 [DEBUG] Grabbing contig between nodes ref0505257.1e5 & ref0505257.1e3 - [trim 0, 0] 2017-11-14 09:45:28,686 [DEBUG] contig 9427 to 9473 2017-11-14 09:45:28,686 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,686 [DEBUG] Moving from ref0505257.1e5 to ref0505257.0e3 (p=1) 2017-11-14 09:45:28,686 [DEBUG] unimproved gap 2017-11-14 09:45:28,686 [DEBUG] Moving from ref0505257.0e3 to ref0505257e5 (p=1) 2017-11-14 09:45:28,686 [DEBUG] contig 2017-11-14 09:45:28,686 [DEBUG] who? ref0505257e5 ref0505257.0e3 2017-11-14 09:45:28,686 [DEBUG] Grabbing contig between nodes ref0505257e5 & ref0505257.0e3 - [trim 0, 0] 2017-11-14 09:45:28,686 [DEBUG] contig 0 to 9382 2017-11-14 09:45:28,686 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,686 [DEBUG] FirstFlipping 93 2017-11-14 09:45:28,687 [DEBUG] Contig 94 2017-11-14 09:45:28,689 [DEBUG] Moving from ref0632352e3 to ref0632352.17e5 (p=1) 2017-11-14 09:45:28,689 [DEBUG] contig 2017-11-14 09:45:28,689 [DEBUG] who? ref0632352.17e5 ref0632352e3 2017-11-14 09:45:28,689 [DEBUG] Grabbing contig between nodes ref0632352.17e5 & ref0632352e3 - [trim 0, 0] 2017-11-14 09:45:28,689 [DEBUG] contig 30633 to 34618 2017-11-14 09:45:28,689 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,689 [DEBUG] Moving from ref0632352.17e5 to ref0632352.16e3 (p=1) 2017-11-14 09:45:28,689 [DEBUG] unimproved gap 2017-11-14 09:45:28,689 [DEBUG] Moving from ref0632352.16e3 to ref0632352.16e5 (p=1) 2017-11-14 09:45:28,689 [DEBUG] contig 2017-11-14 09:45:28,689 [DEBUG] who? ref0632352.16e5 ref0632352.16e3 2017-11-14 09:45:28,689 [DEBUG] Grabbing contig between nodes ref0632352.16e5 & ref0632352.16e3 - [trim 0, 0] 2017-11-14 09:45:28,690 [DEBUG] contig 30095 to 30351 2017-11-14 09:45:28,690 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,690 [DEBUG] Moving from ref0632352.16e5 to ref0632352.15e3 (p=1) 2017-11-14 09:45:28,690 [DEBUG] unimproved gap 2017-11-14 09:45:28,690 [DEBUG] Moving from ref0632352.15e3 to ref0632352.15e5 (p=1) 2017-11-14 09:45:28,690 [DEBUG] contig 2017-11-14 09:45:28,690 [DEBUG] who? ref0632352.15e5 ref0632352.15e3 2017-11-14 09:45:28,690 [DEBUG] Grabbing contig between nodes ref0632352.15e5 & ref0632352.15e3 - [trim 0, 0] 2017-11-14 09:45:28,690 [DEBUG] contig 22571 to 29839 2017-11-14 09:45:28,690 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,690 [DEBUG] Moving from ref0632352.15e5 to ref0632352.14e3 (p=1) 2017-11-14 09:45:28,690 [DEBUG] unimproved gap 2017-11-14 09:45:28,690 [DEBUG] Moving from ref0632352.14e3 to ref0632352.14e5 (p=1) 2017-11-14 09:45:28,691 [DEBUG] contig 2017-11-14 09:45:28,691 [DEBUG] who? ref0632352.14e5 ref0632352.14e3 2017-11-14 09:45:28,691 [DEBUG] Grabbing contig between nodes ref0632352.14e5 & ref0632352.14e3 - [trim 0, 0] 2017-11-14 09:45:28,691 [DEBUG] contig 22120 to 22368 2017-11-14 09:45:28,691 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,691 [DEBUG] Moving from ref0632352.14e5 to ref0632352.13e3 (p=1) 2017-11-14 09:45:28,691 [DEBUG] unimproved gap 2017-11-14 09:45:28,691 [DEBUG] Moving from ref0632352.13e3 to ref0632352.13e5 (p=1) 2017-11-14 09:45:28,691 [DEBUG] contig 2017-11-14 09:45:28,691 [DEBUG] who? ref0632352.13e5 ref0632352.13e3 2017-11-14 09:45:28,691 [DEBUG] Grabbing contig between nodes ref0632352.13e5 & ref0632352.13e3 - [trim 0, 0] 2017-11-14 09:45:28,691 [DEBUG] contig 18544 to 21541 2017-11-14 09:45:28,691 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,692 [DEBUG] Moving from ref0632352.13e5 to ref0632352.12e3 (p=1) 2017-11-14 09:45:28,692 [DEBUG] unimproved gap 2017-11-14 09:45:28,692 [DEBUG] Moving from ref0632352.12e3 to ref0632352.12e5 (p=1) 2017-11-14 09:45:28,692 [DEBUG] contig 2017-11-14 09:45:28,692 [DEBUG] who? ref0632352.12e5 ref0632352.12e3 2017-11-14 09:45:28,692 [DEBUG] Grabbing contig between nodes ref0632352.12e5 & ref0632352.12e3 - [trim 0, 0] 2017-11-14 09:45:28,692 [DEBUG] contig 18132 to 18403 2017-11-14 09:45:28,692 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,692 [DEBUG] Moving from ref0632352.12e5 to ref0632352.11e3 (p=1) 2017-11-14 09:45:28,692 [DEBUG] unimproved gap 2017-11-14 09:45:28,692 [DEBUG] Moving from ref0632352.11e3 to ref0632352.11e5 (p=1) 2017-11-14 09:45:28,692 [DEBUG] contig 2017-11-14 09:45:28,692 [DEBUG] who? ref0632352.11e5 ref0632352.11e3 2017-11-14 09:45:28,693 [DEBUG] Grabbing contig between nodes ref0632352.11e5 & ref0632352.11e3 - [trim 0, 0] 2017-11-14 09:45:28,693 [DEBUG] contig 17533 to 17787 2017-11-14 09:45:28,693 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,693 [DEBUG] Moving from ref0632352.11e5 to ref0632352.10e3 (p=1) 2017-11-14 09:45:28,693 [DEBUG] unimproved gap 2017-11-14 09:45:28,693 [DEBUG] Moving from ref0632352.10e3 to ref0632352.10e5 (p=1) 2017-11-14 09:45:28,693 [DEBUG] contig 2017-11-14 09:45:28,693 [DEBUG] who? ref0632352.10e5 ref0632352.10e3 2017-11-14 09:45:28,693 [DEBUG] Grabbing contig between nodes ref0632352.10e5 & ref0632352.10e3 - [trim 0, 0] 2017-11-14 09:45:28,693 [DEBUG] contig 16991 to 17254 2017-11-14 09:45:28,693 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,693 [DEBUG] Moving from ref0632352.10e5 to ref0632352.9e3 (p=1) 2017-11-14 09:45:28,693 [DEBUG] unimproved gap 2017-11-14 09:45:28,694 [DEBUG] Moving from ref0632352.9e3 to ref0632352.9e5 (p=1) 2017-11-14 09:45:28,694 [DEBUG] contig 2017-11-14 09:45:28,694 [DEBUG] who? ref0632352.9e5 ref0632352.9e3 2017-11-14 09:45:28,694 [DEBUG] Grabbing contig between nodes ref0632352.9e5 & ref0632352.9e3 - [trim 0, 0] 2017-11-14 09:45:28,694 [DEBUG] contig 14144 to 16753 2017-11-14 09:45:28,694 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,694 [DEBUG] Moving from ref0632352.9e5 to ref0632352.8e3 (p=1) 2017-11-14 09:45:28,694 [DEBUG] unimproved gap 2017-11-14 09:45:28,694 [DEBUG] Moving from ref0632352.8e3 to ref0632352.8e5 (p=1) 2017-11-14 09:45:28,694 [DEBUG] contig 2017-11-14 09:45:28,694 [DEBUG] who? ref0632352.8e5 ref0632352.8e3 2017-11-14 09:45:28,694 [DEBUG] Grabbing contig between nodes ref0632352.8e5 & ref0632352.8e3 - [trim 0, 0] 2017-11-14 09:45:28,695 [DEBUG] contig 12256 to 13968 2017-11-14 09:45:28,695 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,695 [DEBUG] Moving from ref0632352.8e5 to ref0632352.7e3 (p=1) 2017-11-14 09:45:28,695 [DEBUG] unimproved gap 2017-11-14 09:45:28,695 [DEBUG] Moving from ref0632352.7e3 to ref0632352.7e5 (p=1) 2017-11-14 09:45:28,695 [DEBUG] contig 2017-11-14 09:45:28,695 [DEBUG] who? ref0632352.7e5 ref0632352.7e3 2017-11-14 09:45:28,695 [DEBUG] Grabbing contig between nodes ref0632352.7e5 & ref0632352.7e3 - [trim 0, 0] 2017-11-14 09:45:28,695 [DEBUG] contig 7564 to 11854 2017-11-14 09:45:28,695 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,695 [DEBUG] Moving from ref0632352.7e5 to ref0632352.6e3 (p=1) 2017-11-14 09:45:28,695 [DEBUG] unimproved gap 2017-11-14 09:45:28,695 [DEBUG] Moving from ref0632352.6e3 to ref0632352.6e5 (p=1) 2017-11-14 09:45:28,696 [DEBUG] contig 2017-11-14 09:45:28,696 [DEBUG] who? ref0632352.6e5 ref0632352.6e3 2017-11-14 09:45:28,696 [DEBUG] Grabbing contig between nodes ref0632352.6e5 & ref0632352.6e3 - [trim 0, 0] 2017-11-14 09:45:28,696 [DEBUG] contig 7494 to 7534 2017-11-14 09:45:28,696 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,696 [DEBUG] Moving from ref0632352.6e5 to ref0632352.5e3 (p=1) 2017-11-14 09:45:28,696 [DEBUG] unimproved gap 2017-11-14 09:45:28,696 [DEBUG] Moving from ref0632352.5e3 to ref0632352.5e5 (p=1) 2017-11-14 09:45:28,696 [DEBUG] contig 2017-11-14 09:45:28,696 [DEBUG] who? ref0632352.5e5 ref0632352.5e3 2017-11-14 09:45:28,696 [DEBUG] Grabbing contig between nodes ref0632352.5e5 & ref0632352.5e3 - [trim 0, 0] 2017-11-14 09:45:28,696 [DEBUG] contig 7410 to 7447 2017-11-14 09:45:28,696 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,697 [DEBUG] Moving from ref0632352.5e5 to ref0632352.4e3 (p=1) 2017-11-14 09:45:28,697 [DEBUG] unimproved gap 2017-11-14 09:45:28,697 [DEBUG] Moving from ref0632352.4e3 to ref0632352.4e5 (p=1) 2017-11-14 09:45:28,697 [DEBUG] contig 2017-11-14 09:45:28,697 [DEBUG] who? ref0632352.4e5 ref0632352.4e3 2017-11-14 09:45:28,697 [DEBUG] Grabbing contig between nodes ref0632352.4e5 & ref0632352.4e3 - [trim 0, 0] 2017-11-14 09:45:28,697 [DEBUG] contig 5185 to 7299 2017-11-14 09:45:28,697 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,697 [DEBUG] Moving from ref0632352.4e5 to ref0632352.3e3 (p=1) 2017-11-14 09:45:28,697 [DEBUG] unimproved gap 2017-11-14 09:45:28,697 [DEBUG] Moving from ref0632352.3e3 to ref0632352.3e5 (p=1) 2017-11-14 09:45:28,697 [DEBUG] contig 2017-11-14 09:45:28,697 [DEBUG] who? ref0632352.3e5 ref0632352.3e3 2017-11-14 09:45:28,697 [DEBUG] Grabbing contig between nodes ref0632352.3e5 & ref0632352.3e3 - [trim 0, 0] 2017-11-14 09:45:28,698 [DEBUG] contig 5039 to 5064 2017-11-14 09:45:28,698 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,698 [DEBUG] Moving from ref0632352.3e5 to ref0632352.2e3 (p=1) 2017-11-14 09:45:28,698 [DEBUG] unimproved gap 2017-11-14 09:45:28,698 [DEBUG] Moving from ref0632352.2e3 to ref0632352.2e5 (p=1) 2017-11-14 09:45:28,698 [DEBUG] contig 2017-11-14 09:45:28,698 [DEBUG] who? ref0632352.2e5 ref0632352.2e3 2017-11-14 09:45:28,698 [DEBUG] Grabbing contig between nodes ref0632352.2e5 & ref0632352.2e3 - [trim 0, 0] 2017-11-14 09:45:28,698 [DEBUG] contig 2733 to 4902 2017-11-14 09:45:28,698 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,698 [DEBUG] Moving from ref0632352.2e5 to ref0632352.1e3 (p=1) 2017-11-14 09:45:28,698 [DEBUG] unimproved gap 2017-11-14 09:45:28,698 [DEBUG] Moving from ref0632352.1e3 to ref0632352.1e5 (p=1) 2017-11-14 09:45:28,698 [DEBUG] contig 2017-11-14 09:45:28,699 [DEBUG] who? ref0632352.1e5 ref0632352.1e3 2017-11-14 09:45:28,699 [DEBUG] Grabbing contig between nodes ref0632352.1e5 & ref0632352.1e3 - [trim 0, 0] 2017-11-14 09:45:28,699 [DEBUG] contig 1752 to 2376 2017-11-14 09:45:28,699 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,699 [DEBUG] Moving from ref0632352.1e5 to ref0632352.0e3 (p=1) 2017-11-14 09:45:28,699 [DEBUG] unimproved gap 2017-11-14 09:45:28,699 [DEBUG] Moving from ref0632352.0e3 to ref0632352e5 (p=1) 2017-11-14 09:45:28,699 [DEBUG] contig 2017-11-14 09:45:28,699 [DEBUG] who? ref0632352e5 ref0632352.0e3 2017-11-14 09:45:28,699 [DEBUG] Grabbing contig between nodes ref0632352e5 & ref0632352.0e3 - [trim 0, 0] 2017-11-14 09:45:28,699 [DEBUG] contig 0 to 1507 2017-11-14 09:45:28,699 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,699 [DEBUG] FirstFlipping 94 2017-11-14 09:45:28,700 [DEBUG] Contig 95 2017-11-14 09:45:28,702 [DEBUG] Moving from ref0007204e5 to ref0007204.0e3 (p=1) 2017-11-14 09:45:28,702 [DEBUG] contig 2017-11-14 09:45:28,702 [DEBUG] who? ref0007204e5 ref0007204.0e3 2017-11-14 09:45:28,702 [DEBUG] Grabbing contig between nodes ref0007204e5 & ref0007204.0e3 - [trim 0, 0] 2017-11-14 09:45:28,702 [DEBUG] contig 0 to 1583 2017-11-14 09:45:28,702 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,702 [DEBUG] Moving from ref0007204.0e3 to ref0007204.1e5 (p=1) 2017-11-14 09:45:28,702 [DEBUG] unimproved gap 2017-11-14 09:45:28,703 [DEBUG] Moving from ref0007204.1e5 to ref0007204.1e3 (p=1) 2017-11-14 09:45:28,703 [DEBUG] contig 2017-11-14 09:45:28,703 [DEBUG] who? ref0007204.1e5 ref0007204.1e3 2017-11-14 09:45:28,703 [DEBUG] Grabbing contig between nodes ref0007204.1e5 & ref0007204.1e3 - [trim 0, 0] 2017-11-14 09:45:28,703 [DEBUG] contig 1701 to 2403 2017-11-14 09:45:28,703 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,703 [DEBUG] Moving from ref0007204.1e3 to ref0007204.2e5 (p=1) 2017-11-14 09:45:28,703 [DEBUG] unimproved gap 2017-11-14 09:45:28,703 [DEBUG] Moving from ref0007204.2e5 to ref0007204.2e3 (p=1) 2017-11-14 09:45:28,703 [DEBUG] contig 2017-11-14 09:45:28,703 [DEBUG] who? ref0007204.2e5 ref0007204.2e3 2017-11-14 09:45:28,703 [DEBUG] Grabbing contig between nodes ref0007204.2e5 & ref0007204.2e3 - [trim 0, 0] 2017-11-14 09:45:28,703 [DEBUG] contig 3024 to 3920 2017-11-14 09:45:28,703 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,704 [DEBUG] Moving from ref0007204.2e3 to ref0007204.3e5 (p=1) 2017-11-14 09:45:28,704 [DEBUG] unimproved gap 2017-11-14 09:45:28,704 [DEBUG] Moving from ref0007204.3e5 to ref0007204.3e3 (p=1) 2017-11-14 09:45:28,704 [DEBUG] contig 2017-11-14 09:45:28,704 [DEBUG] who? ref0007204.3e5 ref0007204.3e3 2017-11-14 09:45:28,704 [DEBUG] Grabbing contig between nodes ref0007204.3e5 & ref0007204.3e3 - [trim 0, 0] 2017-11-14 09:45:28,704 [DEBUG] contig 4046 to 9433 2017-11-14 09:45:28,704 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,704 [DEBUG] Moving from ref0007204.3e3 to ref0007204.4e5 (p=1) 2017-11-14 09:45:28,704 [DEBUG] unimproved gap 2017-11-14 09:45:28,704 [DEBUG] Moving from ref0007204.4e5 to ref0007204.4e3 (p=1) 2017-11-14 09:45:28,704 [DEBUG] contig 2017-11-14 09:45:28,704 [DEBUG] who? ref0007204.4e5 ref0007204.4e3 2017-11-14 09:45:28,705 [DEBUG] Grabbing contig between nodes ref0007204.4e5 & ref0007204.4e3 - [trim 0, 0] 2017-11-14 09:45:28,705 [DEBUG] contig 9971 to 10913 2017-11-14 09:45:28,705 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,705 [DEBUG] Moving from ref0007204.4e3 to ref0007204.5e5 (p=1) 2017-11-14 09:45:28,705 [DEBUG] unimproved gap 2017-11-14 09:45:28,705 [DEBUG] Moving from ref0007204.5e5 to ref0007204.5e3 (p=1) 2017-11-14 09:45:28,705 [DEBUG] contig 2017-11-14 09:45:28,705 [DEBUG] who? ref0007204.5e5 ref0007204.5e3 2017-11-14 09:45:28,705 [DEBUG] Grabbing contig between nodes ref0007204.5e5 & ref0007204.5e3 - [trim 0, 0] 2017-11-14 09:45:28,705 [DEBUG] contig 11108 to 15108 2017-11-14 09:45:28,705 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,705 [DEBUG] Moving from ref0007204.5e3 to ref0007204.6e5 (p=1) 2017-11-14 09:45:28,705 [DEBUG] unimproved gap 2017-11-14 09:45:28,706 [DEBUG] Moving from ref0007204.6e5 to ref0007204.6e3 (p=1) 2017-11-14 09:45:28,706 [DEBUG] contig 2017-11-14 09:45:28,706 [DEBUG] who? ref0007204.6e5 ref0007204.6e3 2017-11-14 09:45:28,706 [DEBUG] Grabbing contig between nodes ref0007204.6e5 & ref0007204.6e3 - [trim 0, 0] 2017-11-14 09:45:28,706 [DEBUG] contig 15184 to 17150 2017-11-14 09:45:28,706 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,706 [DEBUG] Moving from ref0007204.6e3 to ref0007204.7e5 (p=1) 2017-11-14 09:45:28,706 [DEBUG] unimproved gap 2017-11-14 09:45:28,706 [DEBUG] Moving from ref0007204.7e5 to ref0007204.7e3 (p=1) 2017-11-14 09:45:28,706 [DEBUG] contig 2017-11-14 09:45:28,706 [DEBUG] who? ref0007204.7e5 ref0007204.7e3 2017-11-14 09:45:28,706 [DEBUG] Grabbing contig between nodes ref0007204.7e5 & ref0007204.7e3 - [trim 0, 0] 2017-11-14 09:45:28,706 [DEBUG] contig 17189 to 20779 2017-11-14 09:45:28,707 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,707 [DEBUG] Moving from ref0007204.7e3 to ref0007204.8e5 (p=1) 2017-11-14 09:45:28,707 [DEBUG] unimproved gap 2017-11-14 09:45:28,707 [DEBUG] Moving from ref0007204.8e5 to ref0007204.8e3 (p=1) 2017-11-14 09:45:28,707 [DEBUG] contig 2017-11-14 09:45:28,707 [DEBUG] who? ref0007204.8e5 ref0007204.8e3 2017-11-14 09:45:28,707 [DEBUG] Grabbing contig between nodes ref0007204.8e5 & ref0007204.8e3 - [trim 0, 0] 2017-11-14 09:45:28,707 [DEBUG] contig 21129 to 21178 2017-11-14 09:45:28,707 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,707 [DEBUG] Moving from ref0007204.8e3 to ref0007204.9e5 (p=1) 2017-11-14 09:45:28,707 [DEBUG] unimproved gap 2017-11-14 09:45:28,707 [DEBUG] Moving from ref0007204.9e5 to ref0007204.9e3 (p=1) 2017-11-14 09:45:28,707 [DEBUG] contig 2017-11-14 09:45:28,707 [DEBUG] who? ref0007204.9e5 ref0007204.9e3 2017-11-14 09:45:28,708 [DEBUG] Grabbing contig between nodes ref0007204.9e5 & ref0007204.9e3 - [trim 0, 0] 2017-11-14 09:45:28,708 [DEBUG] contig 21564 to 21638 2017-11-14 09:45:28,708 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,708 [DEBUG] Moving from ref0007204.9e3 to ref0007204.10e5 (p=1) 2017-11-14 09:45:28,708 [DEBUG] unimproved gap 2017-11-14 09:45:28,708 [DEBUG] Moving from ref0007204.10e5 to ref0007204.10e3 (p=1) 2017-11-14 09:45:28,708 [DEBUG] contig 2017-11-14 09:45:28,708 [DEBUG] who? ref0007204.10e5 ref0007204.10e3 2017-11-14 09:45:28,708 [DEBUG] Grabbing contig between nodes ref0007204.10e5 & ref0007204.10e3 - [trim 0, 0] 2017-11-14 09:45:28,708 [DEBUG] contig 21730 to 22048 2017-11-14 09:45:28,708 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,708 [DEBUG] Moving from ref0007204.10e3 to ref0007204.11e5 (p=1) 2017-11-14 09:45:28,709 [DEBUG] unimproved gap 2017-11-14 09:45:28,709 [DEBUG] Moving from ref0007204.11e5 to ref0007204.11e3 (p=1) 2017-11-14 09:45:28,709 [DEBUG] contig 2017-11-14 09:45:28,709 [DEBUG] who? ref0007204.11e5 ref0007204.11e3 2017-11-14 09:45:28,709 [DEBUG] Grabbing contig between nodes ref0007204.11e5 & ref0007204.11e3 - [trim 0, 0] 2017-11-14 09:45:28,709 [DEBUG] contig 22128 to 22538 2017-11-14 09:45:28,709 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,709 [DEBUG] Moving from ref0007204.11e3 to ref0007204.12e5 (p=1) 2017-11-14 09:45:28,709 [DEBUG] unimproved gap 2017-11-14 09:45:28,709 [DEBUG] Moving from ref0007204.12e5 to ref0007204.12e3 (p=1) 2017-11-14 09:45:28,709 [DEBUG] contig 2017-11-14 09:45:28,709 [DEBUG] who? ref0007204.12e5 ref0007204.12e3 2017-11-14 09:45:28,709 [DEBUG] Grabbing contig between nodes ref0007204.12e5 & ref0007204.12e3 - [trim 0, 0] 2017-11-14 09:45:28,710 [DEBUG] contig 22776 to 23087 2017-11-14 09:45:28,710 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,710 [DEBUG] Moving from ref0007204.12e3 to ref0007204.13e5 (p=1) 2017-11-14 09:45:28,710 [DEBUG] unimproved gap 2017-11-14 09:45:28,710 [DEBUG] Moving from ref0007204.13e5 to ref0007204.13e3 (p=1) 2017-11-14 09:45:28,710 [DEBUG] contig 2017-11-14 09:45:28,710 [DEBUG] who? ref0007204.13e5 ref0007204.13e3 2017-11-14 09:45:28,710 [DEBUG] Grabbing contig between nodes ref0007204.13e5 & ref0007204.13e3 - [trim 0, 0] 2017-11-14 09:45:28,710 [DEBUG] contig 23329 to 23524 2017-11-14 09:45:28,710 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,710 [DEBUG] Moving from ref0007204.13e3 to ref0007204.14e5 (p=1) 2017-11-14 09:45:28,710 [DEBUG] unimproved gap 2017-11-14 09:45:28,710 [DEBUG] Moving from ref0007204.14e5 to ref0007204.14e3 (p=1) 2017-11-14 09:45:28,710 [DEBUG] contig 2017-11-14 09:45:28,711 [DEBUG] who? ref0007204.14e5 ref0007204.14e3 2017-11-14 09:45:28,711 [DEBUG] Grabbing contig between nodes ref0007204.14e5 & ref0007204.14e3 - [trim 0, 0] 2017-11-14 09:45:28,711 [DEBUG] contig 23823 to 24546 2017-11-14 09:45:28,711 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,711 [DEBUG] Moving from ref0007204.14e3 to ref0007204.15e5 (p=1) 2017-11-14 09:45:28,711 [DEBUG] unimproved gap 2017-11-14 09:45:28,711 [DEBUG] Moving from ref0007204.15e5 to ref0007204.15e3 (p=1) 2017-11-14 09:45:28,711 [DEBUG] contig 2017-11-14 09:45:28,711 [DEBUG] who? ref0007204.15e5 ref0007204.15e3 2017-11-14 09:45:28,711 [DEBUG] Grabbing contig between nodes ref0007204.15e5 & ref0007204.15e3 - [trim 0, 0] 2017-11-14 09:45:28,711 [DEBUG] contig 25034 to 26541 2017-11-14 09:45:28,711 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,711 [DEBUG] Moving from ref0007204.15e3 to ref0007204.16e5 (p=1) 2017-11-14 09:45:28,711 [DEBUG] unimproved gap 2017-11-14 09:45:28,712 [DEBUG] Moving from ref0007204.16e5 to ref0007204.16e3 (p=1) 2017-11-14 09:45:28,712 [DEBUG] contig 2017-11-14 09:45:28,712 [DEBUG] who? ref0007204.16e5 ref0007204.16e3 2017-11-14 09:45:28,712 [DEBUG] Grabbing contig between nodes ref0007204.16e5 & ref0007204.16e3 - [trim 0, 0] 2017-11-14 09:45:28,712 [DEBUG] contig 26687 to 27268 2017-11-14 09:45:28,712 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,712 [DEBUG] Moving from ref0007204.16e3 to ref0007204.17e5 (p=1) 2017-11-14 09:45:28,712 [DEBUG] unimproved gap 2017-11-14 09:45:28,712 [DEBUG] Moving from ref0007204.17e5 to ref0007204e3 (p=1) 2017-11-14 09:45:28,712 [DEBUG] contig 2017-11-14 09:45:28,712 [DEBUG] who? ref0007204.17e5 ref0007204e3 2017-11-14 09:45:28,712 [DEBUG] Grabbing contig between nodes ref0007204.17e5 & ref0007204e3 - [trim 0, 0] 2017-11-14 09:45:28,712 [DEBUG] contig 27428 to 27924 2017-11-14 09:45:28,713 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,713 [DEBUG] Contig 96 2017-11-14 09:45:28,715 [DEBUG] Moving from ref0607709e3 to ref0607709.17e5 (p=1) 2017-11-14 09:45:28,715 [DEBUG] contig 2017-11-14 09:45:28,715 [DEBUG] who? ref0607709.17e5 ref0607709e3 2017-11-14 09:45:28,715 [DEBUG] Grabbing contig between nodes ref0607709.17e5 & ref0607709e3 - [trim 0, 0] 2017-11-14 09:45:28,715 [DEBUG] contig 16738 to 19694 2017-11-14 09:45:28,715 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,715 [DEBUG] Moving from ref0607709.17e5 to ref0607709.16e3 (p=1) 2017-11-14 09:45:28,715 [DEBUG] unimproved gap 2017-11-14 09:45:28,715 [DEBUG] Moving from ref0607709.16e3 to ref0607709.16e5 (p=1) 2017-11-14 09:45:28,715 [DEBUG] contig 2017-11-14 09:45:28,715 [DEBUG] who? ref0607709.16e5 ref0607709.16e3 2017-11-14 09:45:28,715 [DEBUG] Grabbing contig between nodes ref0607709.16e5 & ref0607709.16e3 - [trim 0, 0] 2017-11-14 09:45:28,716 [DEBUG] contig 12554 to 16353 2017-11-14 09:45:28,716 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,716 [DEBUG] Moving from ref0607709.16e5 to ref0607709.15e3 (p=1) 2017-11-14 09:45:28,716 [DEBUG] unimproved gap 2017-11-14 09:45:28,716 [DEBUG] Moving from ref0607709.15e3 to ref0607709.15e5 (p=1) 2017-11-14 09:45:28,716 [DEBUG] contig 2017-11-14 09:45:28,716 [DEBUG] who? ref0607709.15e5 ref0607709.15e3 2017-11-14 09:45:28,716 [DEBUG] Grabbing contig between nodes ref0607709.15e5 & ref0607709.15e3 - [trim 0, 0] 2017-11-14 09:45:28,716 [DEBUG] contig 11471 to 12428 2017-11-14 09:45:28,716 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,716 [DEBUG] Moving from ref0607709.15e5 to ref0607709.14e3 (p=1) 2017-11-14 09:45:28,716 [DEBUG] unimproved gap 2017-11-14 09:45:28,717 [DEBUG] Moving from ref0607709.14e3 to ref0607709.14e5 (p=1) 2017-11-14 09:45:28,717 [DEBUG] contig 2017-11-14 09:45:28,717 [DEBUG] who? ref0607709.14e5 ref0607709.14e3 2017-11-14 09:45:28,717 [DEBUG] Grabbing contig between nodes ref0607709.14e5 & ref0607709.14e3 - [trim 0, 0] 2017-11-14 09:45:28,717 [DEBUG] contig 9697 to 11363 2017-11-14 09:45:28,717 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,717 [DEBUG] Moving from ref0607709.14e5 to ref0607709.13e3 (p=1) 2017-11-14 09:45:28,717 [DEBUG] unimproved gap 2017-11-14 09:45:28,717 [DEBUG] Moving from ref0607709.13e3 to ref0607709.13e5 (p=1) 2017-11-14 09:45:28,717 [DEBUG] contig 2017-11-14 09:45:28,717 [DEBUG] who? ref0607709.13e5 ref0607709.13e3 2017-11-14 09:45:28,717 [DEBUG] Grabbing contig between nodes ref0607709.13e5 & ref0607709.13e3 - [trim 0, 0] 2017-11-14 09:45:28,717 [DEBUG] contig 9176 to 9255 2017-11-14 09:45:28,717 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,718 [DEBUG] Moving from ref0607709.13e5 to ref0607709.12e3 (p=1) 2017-11-14 09:45:28,718 [DEBUG] unimproved gap 2017-11-14 09:45:28,718 [DEBUG] Moving from ref0607709.12e3 to ref0607709.12e5 (p=1) 2017-11-14 09:45:28,718 [DEBUG] contig 2017-11-14 09:45:28,718 [DEBUG] who? ref0607709.12e5 ref0607709.12e3 2017-11-14 09:45:28,718 [DEBUG] Grabbing contig between nodes ref0607709.12e5 & ref0607709.12e3 - [trim 0, 0] 2017-11-14 09:45:28,718 [DEBUG] contig 5857 to 8736 2017-11-14 09:45:28,718 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,718 [DEBUG] Moving from ref0607709.12e5 to ref0607709.11e3 (p=1) 2017-11-14 09:45:28,718 [DEBUG] unimproved gap 2017-11-14 09:45:28,718 [DEBUG] Moving from ref0607709.11e3 to ref0607709.11e5 (p=1) 2017-11-14 09:45:28,718 [DEBUG] contig 2017-11-14 09:45:28,718 [DEBUG] who? ref0607709.11e5 ref0607709.11e3 2017-11-14 09:45:28,719 [DEBUG] Grabbing contig between nodes ref0607709.11e5 & ref0607709.11e3 - [trim 0, 0] 2017-11-14 09:45:28,719 [DEBUG] contig 3816 to 5672 2017-11-14 09:45:28,719 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,719 [DEBUG] Moving from ref0607709.11e5 to ref0607709.10e3 (p=1) 2017-11-14 09:45:28,719 [DEBUG] unimproved gap 2017-11-14 09:45:28,719 [DEBUG] Moving from ref0607709.10e3 to ref0607709.10e5 (p=1) 2017-11-14 09:45:28,719 [DEBUG] contig 2017-11-14 09:45:28,719 [DEBUG] who? ref0607709.10e5 ref0607709.10e3 2017-11-14 09:45:28,719 [DEBUG] Grabbing contig between nodes ref0607709.10e5 & ref0607709.10e3 - [trim 0, 0] 2017-11-14 09:45:28,719 [DEBUG] contig 3729 to 3762 2017-11-14 09:45:28,719 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,719 [DEBUG] Moving from ref0607709.10e5 to ref0607709.9e3 (p=1) 2017-11-14 09:45:28,719 [DEBUG] unimproved gap 2017-11-14 09:45:28,719 [DEBUG] Moving from ref0607709.9e3 to ref0607709.9e5 (p=1) 2017-11-14 09:45:28,720 [DEBUG] contig 2017-11-14 09:45:28,720 [DEBUG] who? ref0607709.9e5 ref0607709.9e3 2017-11-14 09:45:28,720 [DEBUG] Grabbing contig between nodes ref0607709.9e5 & ref0607709.9e3 - [trim 0, 0] 2017-11-14 09:45:28,720 [DEBUG] contig 3306 to 3685 2017-11-14 09:45:28,720 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,720 [DEBUG] Moving from ref0607709.9e5 to ref0607709.8e3 (p=1) 2017-11-14 09:45:28,720 [DEBUG] unimproved gap 2017-11-14 09:45:28,720 [DEBUG] Moving from ref0607709.8e3 to ref0607709.8e5 (p=1) 2017-11-14 09:45:28,720 [DEBUG] contig 2017-11-14 09:45:28,720 [DEBUG] who? ref0607709.8e5 ref0607709.8e3 2017-11-14 09:45:28,720 [DEBUG] Grabbing contig between nodes ref0607709.8e5 & ref0607709.8e3 - [trim 0, 0] 2017-11-14 09:45:28,720 [DEBUG] contig 3199 to 3245 2017-11-14 09:45:28,720 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,721 [DEBUG] Moving from ref0607709.8e5 to ref0607709.7e3 (p=1) 2017-11-14 09:45:28,721 [DEBUG] unimproved gap 2017-11-14 09:45:28,721 [DEBUG] Moving from ref0607709.7e3 to ref0607709.7e5 (p=1) 2017-11-14 09:45:28,721 [DEBUG] contig 2017-11-14 09:45:28,721 [DEBUG] who? ref0607709.7e5 ref0607709.7e3 2017-11-14 09:45:28,721 [DEBUG] Grabbing contig between nodes ref0607709.7e5 & ref0607709.7e3 - [trim 0, 0] 2017-11-14 09:45:28,721 [DEBUG] contig 3022 to 3083 2017-11-14 09:45:28,721 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,721 [DEBUG] Moving from ref0607709.7e5 to ref0607709.6e3 (p=1) 2017-11-14 09:45:28,721 [DEBUG] unimproved gap 2017-11-14 09:45:28,721 [DEBUG] Moving from ref0607709.6e3 to ref0607709.6e5 (p=1) 2017-11-14 09:45:28,721 [DEBUG] contig 2017-11-14 09:45:28,721 [DEBUG] who? ref0607709.6e5 ref0607709.6e3 2017-11-14 09:45:28,721 [DEBUG] Grabbing contig between nodes ref0607709.6e5 & ref0607709.6e3 - [trim 0, 0] 2017-11-14 09:45:28,722 [DEBUG] contig 2714 to 2851 2017-11-14 09:45:28,722 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,722 [DEBUG] Moving from ref0607709.6e5 to ref0607709.5e3 (p=1) 2017-11-14 09:45:28,722 [DEBUG] unimproved gap 2017-11-14 09:45:28,722 [DEBUG] Moving from ref0607709.5e3 to ref0607709.5e5 (p=1) 2017-11-14 09:45:28,722 [DEBUG] contig 2017-11-14 09:45:28,722 [DEBUG] who? ref0607709.5e5 ref0607709.5e3 2017-11-14 09:45:28,722 [DEBUG] Grabbing contig between nodes ref0607709.5e5 & ref0607709.5e3 - [trim 0, 0] 2017-11-14 09:45:28,722 [DEBUG] contig 2602 to 2650 2017-11-14 09:45:28,722 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,722 [DEBUG] Moving from ref0607709.5e5 to ref0607709.4e3 (p=1) 2017-11-14 09:45:28,722 [DEBUG] unimproved gap 2017-11-14 09:45:28,722 [DEBUG] Moving from ref0607709.4e3 to ref0607709.4e5 (p=1) 2017-11-14 09:45:28,723 [DEBUG] contig 2017-11-14 09:45:28,723 [DEBUG] who? ref0607709.4e5 ref0607709.4e3 2017-11-14 09:45:28,723 [DEBUG] Grabbing contig between nodes ref0607709.4e5 & ref0607709.4e3 - [trim 0, 0] 2017-11-14 09:45:28,723 [DEBUG] contig 1920 to 2556 2017-11-14 09:45:28,723 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,723 [DEBUG] Moving from ref0607709.4e5 to ref0607709.3e3 (p=1) 2017-11-14 09:45:28,723 [DEBUG] unimproved gap 2017-11-14 09:45:28,723 [DEBUG] Moving from ref0607709.3e3 to ref0607709.3e5 (p=1) 2017-11-14 09:45:28,723 [DEBUG] contig 2017-11-14 09:45:28,723 [DEBUG] who? ref0607709.3e5 ref0607709.3e3 2017-11-14 09:45:28,723 [DEBUG] Grabbing contig between nodes ref0607709.3e5 & ref0607709.3e3 - [trim 0, 0] 2017-11-14 09:45:28,723 [DEBUG] contig 1205 to 1869 2017-11-14 09:45:28,723 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,723 [DEBUG] Moving from ref0607709.3e5 to ref0607709.2e3 (p=1) 2017-11-14 09:45:28,724 [DEBUG] unimproved gap 2017-11-14 09:45:28,724 [DEBUG] Moving from ref0607709.2e3 to ref0607709.2e5 (p=1) 2017-11-14 09:45:28,724 [DEBUG] contig 2017-11-14 09:45:28,724 [DEBUG] who? ref0607709.2e5 ref0607709.2e3 2017-11-14 09:45:28,724 [DEBUG] Grabbing contig between nodes ref0607709.2e5 & ref0607709.2e3 - [trim 0, 0] 2017-11-14 09:45:28,724 [DEBUG] contig 837 to 1114 2017-11-14 09:45:28,724 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,724 [DEBUG] Moving from ref0607709.2e5 to ref0607709.1e3 (p=1) 2017-11-14 09:45:28,724 [DEBUG] unimproved gap 2017-11-14 09:45:28,724 [DEBUG] Moving from ref0607709.1e3 to ref0607709.1e5 (p=1) 2017-11-14 09:45:28,724 [DEBUG] contig 2017-11-14 09:45:28,724 [DEBUG] who? ref0607709.1e5 ref0607709.1e3 2017-11-14 09:45:28,724 [DEBUG] Grabbing contig between nodes ref0607709.1e5 & ref0607709.1e3 - [trim 0, 0] 2017-11-14 09:45:28,725 [DEBUG] contig 462 to 769 2017-11-14 09:45:28,725 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,725 [DEBUG] Moving from ref0607709.1e5 to ref0607709.0e3 (p=1) 2017-11-14 09:45:28,725 [DEBUG] unimproved gap 2017-11-14 09:45:28,725 [DEBUG] Moving from ref0607709.0e3 to ref0607709e5 (p=1) 2017-11-14 09:45:28,725 [DEBUG] contig 2017-11-14 09:45:28,725 [DEBUG] who? ref0607709e5 ref0607709.0e3 2017-11-14 09:45:28,725 [DEBUG] Grabbing contig between nodes ref0607709e5 & ref0607709.0e3 - [trim 0, 0] 2017-11-14 09:45:28,725 [DEBUG] contig 0 to 81 2017-11-14 09:45:28,725 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,725 [DEBUG] FirstFlipping 96 2017-11-14 09:45:28,726 [DEBUG] Contig 97 2017-11-14 09:45:28,728 [DEBUG] Moving from ref0452563e3 to ref0452563.17e5 (p=1) 2017-11-14 09:45:28,728 [DEBUG] contig 2017-11-14 09:45:28,728 [DEBUG] who? ref0452563.17e5 ref0452563e3 2017-11-14 09:45:28,728 [DEBUG] Grabbing contig between nodes ref0452563.17e5 & ref0452563e3 - [trim 0, 0] 2017-11-14 09:45:28,728 [DEBUG] contig 10865 to 11538 2017-11-14 09:45:28,728 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,728 [DEBUG] Moving from ref0452563.17e5 to ref0452563.16e3 (p=1) 2017-11-14 09:45:28,728 [DEBUG] unimproved gap 2017-11-14 09:45:28,728 [DEBUG] Moving from ref0452563.16e3 to ref0452563.16e5 (p=1) 2017-11-14 09:45:28,728 [DEBUG] contig 2017-11-14 09:45:28,728 [DEBUG] who? ref0452563.16e5 ref0452563.16e3 2017-11-14 09:45:28,728 [DEBUG] Grabbing contig between nodes ref0452563.16e5 & ref0452563.16e3 - [trim 0, 0] 2017-11-14 09:45:28,728 [DEBUG] contig 9975 to 10654 2017-11-14 09:45:28,729 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,729 [DEBUG] Moving from ref0452563.16e5 to ref0452563.15e3 (p=1) 2017-11-14 09:45:28,729 [DEBUG] unimproved gap 2017-11-14 09:45:28,729 [DEBUG] Moving from ref0452563.15e3 to ref0452563.15e5 (p=1) 2017-11-14 09:45:28,729 [DEBUG] contig 2017-11-14 09:45:28,729 [DEBUG] who? ref0452563.15e5 ref0452563.15e3 2017-11-14 09:45:28,729 [DEBUG] Grabbing contig between nodes ref0452563.15e5 & ref0452563.15e3 - [trim 0, 0] 2017-11-14 09:45:28,729 [DEBUG] contig 9530 to 9908 2017-11-14 09:45:28,729 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,729 [DEBUG] Moving from ref0452563.15e5 to ref0452563.14e3 (p=1) 2017-11-14 09:45:28,729 [DEBUG] unimproved gap 2017-11-14 09:45:28,729 [DEBUG] Moving from ref0452563.14e3 to ref0452563.14e5 (p=1) 2017-11-14 09:45:28,729 [DEBUG] contig 2017-11-14 09:45:28,730 [DEBUG] who? ref0452563.14e5 ref0452563.14e3 2017-11-14 09:45:28,730 [DEBUG] Grabbing contig between nodes ref0452563.14e5 & ref0452563.14e3 - [trim 0, 0] 2017-11-14 09:45:28,730 [DEBUG] contig 9237 to 9447 2017-11-14 09:45:28,730 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,730 [DEBUG] Moving from ref0452563.14e5 to ref0452563.13e3 (p=1) 2017-11-14 09:45:28,730 [DEBUG] unimproved gap 2017-11-14 09:45:28,730 [DEBUG] Moving from ref0452563.13e3 to ref0452563.13e5 (p=1) 2017-11-14 09:45:28,730 [DEBUG] contig 2017-11-14 09:45:28,730 [DEBUG] who? ref0452563.13e5 ref0452563.13e3 2017-11-14 09:45:28,730 [DEBUG] Grabbing contig between nodes ref0452563.13e5 & ref0452563.13e3 - [trim 0, 0] 2017-11-14 09:45:28,730 [DEBUG] contig 8915 to 9030 2017-11-14 09:45:28,730 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,730 [DEBUG] Moving from ref0452563.13e5 to ref0452563.12e3 (p=1) 2017-11-14 09:45:28,730 [DEBUG] unimproved gap 2017-11-14 09:45:28,731 [DEBUG] Moving from ref0452563.12e3 to ref0452563.12e5 (p=1) 2017-11-14 09:45:28,731 [DEBUG] contig 2017-11-14 09:45:28,731 [DEBUG] who? ref0452563.12e5 ref0452563.12e3 2017-11-14 09:45:28,731 [DEBUG] Grabbing contig between nodes ref0452563.12e5 & ref0452563.12e3 - [trim 0, 0] 2017-11-14 09:45:28,731 [DEBUG] contig 8577 to 8678 2017-11-14 09:45:28,731 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,731 [DEBUG] Moving from ref0452563.12e5 to ref0452563.11e3 (p=1) 2017-11-14 09:45:28,731 [DEBUG] unimproved gap 2017-11-14 09:45:28,731 [DEBUG] Moving from ref0452563.11e3 to ref0452563.11e5 (p=1) 2017-11-14 09:45:28,731 [DEBUG] contig 2017-11-14 09:45:28,731 [DEBUG] who? ref0452563.11e5 ref0452563.11e3 2017-11-14 09:45:28,731 [DEBUG] Grabbing contig between nodes ref0452563.11e5 & ref0452563.11e3 - [trim 0, 0] 2017-11-14 09:45:28,731 [DEBUG] contig 8216 to 8432 2017-11-14 09:45:28,732 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,732 [DEBUG] Moving from ref0452563.11e5 to ref0452563.10e3 (p=1) 2017-11-14 09:45:28,732 [DEBUG] unimproved gap 2017-11-14 09:45:28,732 [DEBUG] Moving from ref0452563.10e3 to ref0452563.10e5 (p=1) 2017-11-14 09:45:28,732 [DEBUG] contig 2017-11-14 09:45:28,732 [DEBUG] who? ref0452563.10e5 ref0452563.10e3 2017-11-14 09:45:28,732 [DEBUG] Grabbing contig between nodes ref0452563.10e5 & ref0452563.10e3 - [trim 0, 0] 2017-11-14 09:45:28,732 [DEBUG] contig 7027 to 7628 2017-11-14 09:45:28,732 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,732 [DEBUG] Moving from ref0452563.10e5 to ref0452563.9e3 (p=1) 2017-11-14 09:45:28,732 [DEBUG] unimproved gap 2017-11-14 09:45:28,732 [DEBUG] Moving from ref0452563.9e3 to ref0452563.9e5 (p=1) 2017-11-14 09:45:28,732 [DEBUG] contig 2017-11-14 09:45:28,733 [DEBUG] who? ref0452563.9e5 ref0452563.9e3 2017-11-14 09:45:28,733 [DEBUG] Grabbing contig between nodes ref0452563.9e5 & ref0452563.9e3 - [trim 0, 0] 2017-11-14 09:45:28,733 [DEBUG] contig 6320 to 6786 2017-11-14 09:45:28,733 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,733 [DEBUG] Moving from ref0452563.9e5 to ref0452563.8e3 (p=1) 2017-11-14 09:45:28,733 [DEBUG] unimproved gap 2017-11-14 09:45:28,733 [DEBUG] Moving from ref0452563.8e3 to ref0452563.8e5 (p=1) 2017-11-14 09:45:28,733 [DEBUG] contig 2017-11-14 09:45:28,733 [DEBUG] who? ref0452563.8e5 ref0452563.8e3 2017-11-14 09:45:28,733 [DEBUG] Grabbing contig between nodes ref0452563.8e5 & ref0452563.8e3 - [trim 0, 0] 2017-11-14 09:45:28,733 [DEBUG] contig 5905 to 5954 2017-11-14 09:45:28,733 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,733 [DEBUG] Moving from ref0452563.8e5 to ref0452563.7e3 (p=1) 2017-11-14 09:45:28,734 [DEBUG] unimproved gap 2017-11-14 09:45:28,734 [DEBUG] Moving from ref0452563.7e3 to ref0452563.7e5 (p=1) 2017-11-14 09:45:28,734 [DEBUG] contig 2017-11-14 09:45:28,734 [DEBUG] who? ref0452563.7e5 ref0452563.7e3 2017-11-14 09:45:28,734 [DEBUG] Grabbing contig between nodes ref0452563.7e5 & ref0452563.7e3 - [trim 0, 0] 2017-11-14 09:45:28,734 [DEBUG] contig 3368 to 5623 2017-11-14 09:45:28,734 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,734 [DEBUG] Moving from ref0452563.7e5 to ref0452563.6e3 (p=1) 2017-11-14 09:45:28,734 [DEBUG] unimproved gap 2017-11-14 09:45:28,734 [DEBUG] Moving from ref0452563.6e3 to ref0452563.6e5 (p=1) 2017-11-14 09:45:28,734 [DEBUG] contig 2017-11-14 09:45:28,734 [DEBUG] who? ref0452563.6e5 ref0452563.6e3 2017-11-14 09:45:28,734 [DEBUG] Grabbing contig between nodes ref0452563.6e5 & ref0452563.6e3 - [trim 0, 0] 2017-11-14 09:45:28,735 [DEBUG] contig 2543 to 2712 2017-11-14 09:45:28,735 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,735 [DEBUG] Moving from ref0452563.6e5 to ref0452563.5e3 (p=1) 2017-11-14 09:45:28,735 [DEBUG] unimproved gap 2017-11-14 09:45:28,735 [DEBUG] Moving from ref0452563.5e3 to ref0452563.5e5 (p=1) 2017-11-14 09:45:28,735 [DEBUG] contig 2017-11-14 09:45:28,735 [DEBUG] who? ref0452563.5e5 ref0452563.5e3 2017-11-14 09:45:28,735 [DEBUG] Grabbing contig between nodes ref0452563.5e5 & ref0452563.5e3 - [trim 0, 0] 2017-11-14 09:45:28,735 [DEBUG] contig 2284 to 2363 2017-11-14 09:45:28,735 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,735 [DEBUG] Moving from ref0452563.5e5 to ref0452563.4e3 (p=1) 2017-11-14 09:45:28,735 [DEBUG] unimproved gap 2017-11-14 09:45:28,735 [DEBUG] Moving from ref0452563.4e3 to ref0452563.4e5 (p=1) 2017-11-14 09:45:28,735 [DEBUG] contig 2017-11-14 09:45:28,736 [DEBUG] who? ref0452563.4e5 ref0452563.4e3 2017-11-14 09:45:28,736 [DEBUG] Grabbing contig between nodes ref0452563.4e5 & ref0452563.4e3 - [trim 0, 0] 2017-11-14 09:45:28,736 [DEBUG] contig 2152 to 2195 2017-11-14 09:45:28,736 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,736 [DEBUG] Moving from ref0452563.4e5 to ref0452563.3e3 (p=1) 2017-11-14 09:45:28,736 [DEBUG] unimproved gap 2017-11-14 09:45:28,736 [DEBUG] Moving from ref0452563.3e3 to ref0452563.3e5 (p=1) 2017-11-14 09:45:28,736 [DEBUG] contig 2017-11-14 09:45:28,736 [DEBUG] who? ref0452563.3e5 ref0452563.3e3 2017-11-14 09:45:28,736 [DEBUG] Grabbing contig between nodes ref0452563.3e5 & ref0452563.3e3 - [trim 0, 0] 2017-11-14 09:45:28,736 [DEBUG] contig 1731 to 1912 2017-11-14 09:45:28,736 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,736 [DEBUG] Moving from ref0452563.3e5 to ref0452563.2e3 (p=1) 2017-11-14 09:45:28,737 [DEBUG] unimproved gap 2017-11-14 09:45:28,737 [DEBUG] Moving from ref0452563.2e3 to ref0452563.2e5 (p=1) 2017-11-14 09:45:28,737 [DEBUG] contig 2017-11-14 09:45:28,737 [DEBUG] who? ref0452563.2e5 ref0452563.2e3 2017-11-14 09:45:28,737 [DEBUG] Grabbing contig between nodes ref0452563.2e5 & ref0452563.2e3 - [trim 0, 0] 2017-11-14 09:45:28,737 [DEBUG] contig 1513 to 1611 2017-11-14 09:45:28,737 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,737 [DEBUG] Moving from ref0452563.2e5 to ref0452563.1e3 (p=1) 2017-11-14 09:45:28,737 [DEBUG] unimproved gap 2017-11-14 09:45:28,737 [DEBUG] Moving from ref0452563.1e3 to ref0452563.1e5 (p=1) 2017-11-14 09:45:28,737 [DEBUG] contig 2017-11-14 09:45:28,737 [DEBUG] who? ref0452563.1e5 ref0452563.1e3 2017-11-14 09:45:28,737 [DEBUG] Grabbing contig between nodes ref0452563.1e5 & ref0452563.1e3 - [trim 0, 0] 2017-11-14 09:45:28,738 [DEBUG] contig 1349 to 1428 2017-11-14 09:45:28,738 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,738 [DEBUG] Moving from ref0452563.1e5 to ref0452563.0e3 (p=1) 2017-11-14 09:45:28,738 [DEBUG] unimproved gap 2017-11-14 09:45:28,738 [DEBUG] Moving from ref0452563.0e3 to ref0452563e5 (p=1) 2017-11-14 09:45:28,738 [DEBUG] contig 2017-11-14 09:45:28,738 [DEBUG] who? ref0452563e5 ref0452563.0e3 2017-11-14 09:45:28,738 [DEBUG] Grabbing contig between nodes ref0452563e5 & ref0452563.0e3 - [trim 0, 0] 2017-11-14 09:45:28,738 [DEBUG] contig 0 to 1253 2017-11-14 09:45:28,738 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,738 [DEBUG] FirstFlipping 97 2017-11-14 09:45:28,739 [DEBUG] Contig 98 2017-11-14 09:45:28,740 [DEBUG] Moving from ref0203475e5 to ref0203475.0e3 (p=1) 2017-11-14 09:45:28,741 [DEBUG] contig 2017-11-14 09:45:28,741 [DEBUG] who? ref0203475e5 ref0203475.0e3 2017-11-14 09:45:28,741 [DEBUG] Grabbing contig between nodes ref0203475e5 & ref0203475.0e3 - [trim 0, 0] 2017-11-14 09:45:28,741 [DEBUG] contig 0 to 113 2017-11-14 09:45:28,741 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,741 [DEBUG] Moving from ref0203475.0e3 to ref0203475.1e5 (p=1) 2017-11-14 09:45:28,741 [DEBUG] unimproved gap 2017-11-14 09:45:28,741 [DEBUG] Moving from ref0203475.1e5 to ref0203475.1e3 (p=1) 2017-11-14 09:45:28,741 [DEBUG] contig 2017-11-14 09:45:28,741 [DEBUG] who? ref0203475.1e5 ref0203475.1e3 2017-11-14 09:45:28,741 [DEBUG] Grabbing contig between nodes ref0203475.1e5 & ref0203475.1e3 - [trim 0, 0] 2017-11-14 09:45:28,741 [DEBUG] contig 422 to 465 2017-11-14 09:45:28,741 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,742 [DEBUG] Moving from ref0203475.1e3 to ref0203475.2e5 (p=1) 2017-11-14 09:45:28,742 [DEBUG] unimproved gap 2017-11-14 09:45:28,742 [DEBUG] Moving from ref0203475.2e5 to ref0203475.2e3 (p=1) 2017-11-14 09:45:28,742 [DEBUG] contig 2017-11-14 09:45:28,742 [DEBUG] who? ref0203475.2e5 ref0203475.2e3 2017-11-14 09:45:28,742 [DEBUG] Grabbing contig between nodes ref0203475.2e5 & ref0203475.2e3 - [trim 0, 0] 2017-11-14 09:45:28,742 [DEBUG] contig 769 to 807 2017-11-14 09:45:28,742 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,742 [DEBUG] Moving from ref0203475.2e3 to ref0203475.3e5 (p=1) 2017-11-14 09:45:28,742 [DEBUG] unimproved gap 2017-11-14 09:45:28,742 [DEBUG] Moving from ref0203475.3e5 to ref0203475.3e3 (p=1) 2017-11-14 09:45:28,742 [DEBUG] contig 2017-11-14 09:45:28,742 [DEBUG] who? ref0203475.3e5 ref0203475.3e3 2017-11-14 09:45:28,742 [DEBUG] Grabbing contig between nodes ref0203475.3e5 & ref0203475.3e3 - [trim 0, 0] 2017-11-14 09:45:28,743 [DEBUG] contig 930 to 982 2017-11-14 09:45:28,743 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,743 [DEBUG] Moving from ref0203475.3e3 to ref0203475.4e5 (p=1) 2017-11-14 09:45:28,743 [DEBUG] unimproved gap 2017-11-14 09:45:28,743 [DEBUG] Moving from ref0203475.4e5 to ref0203475.4e3 (p=1) 2017-11-14 09:45:28,743 [DEBUG] contig 2017-11-14 09:45:28,743 [DEBUG] who? ref0203475.4e5 ref0203475.4e3 2017-11-14 09:45:28,743 [DEBUG] Grabbing contig between nodes ref0203475.4e5 & ref0203475.4e3 - [trim 0, 0] 2017-11-14 09:45:28,743 [DEBUG] contig 1260 to 1441 2017-11-14 09:45:28,743 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,743 [DEBUG] Moving from ref0203475.4e3 to ref0203475.5e5 (p=1) 2017-11-14 09:45:28,743 [DEBUG] unimproved gap 2017-11-14 09:45:28,743 [DEBUG] Moving from ref0203475.5e5 to ref0203475.5e3 (p=1) 2017-11-14 09:45:28,744 [DEBUG] contig 2017-11-14 09:45:28,744 [DEBUG] who? ref0203475.5e5 ref0203475.5e3 2017-11-14 09:45:28,744 [DEBUG] Grabbing contig between nodes ref0203475.5e5 & ref0203475.5e3 - [trim 0, 0] 2017-11-14 09:45:28,744 [DEBUG] contig 1779 to 1846 2017-11-14 09:45:28,744 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,744 [DEBUG] Moving from ref0203475.5e3 to ref0203475.6e5 (p=1) 2017-11-14 09:45:28,744 [DEBUG] unimproved gap 2017-11-14 09:45:28,744 [DEBUG] Moving from ref0203475.6e5 to ref0203475.6e3 (p=1) 2017-11-14 09:45:28,744 [DEBUG] contig 2017-11-14 09:45:28,744 [DEBUG] who? ref0203475.6e5 ref0203475.6e3 2017-11-14 09:45:28,744 [DEBUG] Grabbing contig between nodes ref0203475.6e5 & ref0203475.6e3 - [trim 0, 0] 2017-11-14 09:45:28,744 [DEBUG] contig 1994 to 5338 2017-11-14 09:45:28,745 [DEBUG] trimming 0 and 0 2017-11-14 09:45:28,745 [DEBUG] Moving from ref0203475.6e3 to ref0203475.7e5 (p=1) 2017-11-14 09:45:28,745 [DEBUG] unimproved gap 2017-11-14 09:45:28,745 [DEBUG] Moving from ref0203475.7e5 to ref0203475.7e3 (p=1) 2017-11-14 09:45:28,745 [DEBUG] contig 20