FastQCFastQC Report
Mon 5 Feb 2018
NR006_S3_L002_R1_001_val_1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNR006_S3_L002_R1_001_val_1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2887227
Sequences flagged as poor quality0
Sequence length20-151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCCGT94330.3267148720900712TruSeq Adapter, Index 6 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA49220.17047499209449066No Hit
CGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCGCGTATGCCGT40470.14016909650678663TruSeq Adapter, Index 6 (98% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)