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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.5.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2018-02-05, 13:00 based on data in: /home/sam/data/geoduck_illumina/trimmed/20180205_trimmed_fastqc_02


        General Statistics

        Showing 36/36 rows and 4/5 columns.
        Sample Name% Dups% GCLengthM Seqs
        AD002_S9_L001_R1_001_val_1_val_1
        12.7%
        34%
        121 bp
        165.9
        AD002_S9_L001_R2_001_val_2_val_2
        12.4%
        34%
        124 bp
        165.9
        AD002_S9_L002_R1_001_val_1_val_1
        12.7%
        34%
        123 bp
        211.9
        AD002_S9_L002_R2_001_val_2_val_2
        12.9%
        34%
        126 bp
        211.9
        NR005_S4_L001_R1_001_val_1_val_1
        5.4%
        37%
        142 bp
        0.0
        NR005_S4_L001_R2_001_val_2_val_2
        5.0%
        37%
        142 bp
        0.0
        NR005_S4_L002_R1_001_val_1_val_1
        5.5%
        37%
        141 bp
        0.0
        NR005_S4_L002_R2_001_val_2_val_2
        5.3%
        37%
        141 bp
        0.0
        NR006_S3_L001_R1_001_val_1_val_1
        52.6%
        37%
        143 bp
        3.3
        NR006_S3_L001_R2_001_val_2_val_2
        51.7%
        37%
        143 bp
        3.3
        NR006_S3_L002_R1_001_val_1_val_1
        51.7%
        37%
        143 bp
        2.9
        NR006_S3_L002_R2_001_val_2_val_2
        50.5%
        38%
        143 bp
        2.9
        NR012_S1_L001_R1_001_val_1_val_1
        5.5%
        35%
        124 bp
        0.3
        NR012_S1_L001_R2_001_val_2_val_2
        5.2%
        35%
        127 bp
        0.3
        NR012_S1_L002_R1_001_val_1_val_1
        6.5%
        35%
        125 bp
        0.3
        NR012_S1_L002_R2_001_val_2_val_2
        6.2%
        35%
        128 bp
        0.3
        NR013_AD013_S2_L001_R1_001_val_1_val_1
        13.3%
        35%
        125 bp
        309.1
        NR013_AD013_S2_L001_R2_001_val_2_val_2
        12.4%
        35%
        127 bp
        309.1
        NR013_AD013_S2_L002_R1_001_val_1_val_1
        13.3%
        35%
        126 bp
        378.6
        NR013_AD013_S2_L002_R2_001_val_2_val_2
        13.2%
        35%
        129 bp
        378.6
        NR014_AD014_S5_L001_R1_001_val_1_val_1
        21.4%
        36%
        116 bp
        745.8
        NR014_AD014_S5_L001_R2_001_val_2_val_2
        20.8%
        36%
        119 bp
        745.8
        NR014_AD014_S5_L002_R1_001_val_1_val_1
        21.1%
        36%
        119 bp
        876.4
        NR014_AD014_S5_L002_R2_001_val_2_val_2
        22.1%
        36%
        122 bp
        876.4
        NR015_AD015_S6_L001_R1_001_val_1_val_1
        15.1%
        35%
        119 bp
        250.8
        NR015_AD015_S6_L001_R2_001_val_2_val_2
        13.8%
        35%
        122 bp
        250.8
        NR015_AD015_S6_L002_R1_001_val_1_val_1
        13.9%
        35%
        121 bp
        285.0
        NR015_AD015_S6_L002_R2_001_val_2_val_2
        13.6%
        36%
        124 bp
        285.0
        NR019_S7_L001_R1_001_val_1_val_1
        0.5%
        30%
        134 bp
        0.0
        NR019_S7_L001_R2_001_val_2_val_2
        0.5%
        31%
        132 bp
        0.0
        NR019_S7_L002_R1_001_val_1_val_1
        1.1%
        31%
        133 bp
        0.0
        NR019_S7_L002_R2_001_val_2_val_2
        1.0%
        33%
        130 bp
        0.0
        NR021_S8_L001_R1_001_val_1_val_1
        34.6%
        37%
        142 bp
        4.0
        NR021_S8_L001_R2_001_val_2_val_2
        32.6%
        38%
        142 bp
        4.0
        NR021_S8_L002_R1_001_val_1_val_1
        34.5%
        38%
        141 bp
        3.5
        NR021_S8_L002_R2_001_val_2_val_2
        33.0%
        38%
        141 bp
        3.5

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        loading..

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        loading..

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        loading..

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        loading..

        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        loading..

        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        loading..

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        loading..

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        No samples found with any adapter contamination > 0.1%