Version 2.04: released on July 13th, 2012 Compile May 10 2017 12:50:52 ******************** Pregraph ******************** Parameters: pregraph -s /gscratch/scrubbed/samwhite/20180218_soapdenovo2_novaseq_geoduck/soap_config -K 117 -p 24 -o /gscratch/scrubbed/samwhite/20180218_soapdenovo2_novaseq_geoduck/ In /gscratch/scrubbed/samwhite/20180218_soapdenovo2_novaseq_geoduck/soap_config, 1 lib(s), maximum read length 150, maximum name length 256. 24 thread(s) initialized. Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R2_001_val_2_val_2.fq.gz --- 100000000th reads. --- 200000000th reads. --- 300000000th reads. Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R2_001_val_2_val_2.fq.gz --- 400000000th reads. --- 500000000th reads. --- 600000000th reads. --- 700000000th reads. Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R2_001_val_2_val_2.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R2_001_val_2_val_2.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R2_001_val_2_val_2.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R2_001_val_2_val_2.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R2_001_val_2_val_2.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R2_001_val_2_val_2.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R1_001_val_1_val_1.fq.gz Import reads from file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R2_001_val_2_val_2.fq.gz --- 800000000th reads. --- 900000000th reads. -- Out of memory --