Command: 
Programfile g GAP_VALUE k KMER_SIZE LD LOAD_SKG GS GENOME_SIZE TrimN TRIM_READS_WITH_N f INPUT_FILE1 f INPUT_FILE2 i1 INWARD_PAIR_END1 i2 INWARD_PAIR_END2 o1 OUTWARD_PAIR_END1 o2 OUTWARD_PAIR_END2

Parameters:
k: kmer size, support 15~127.
g: number of skipped intermediate k-mers, support 1-25.
f: single end reads. Multiple inputs shall be independently imported with this parameter.
i1 & i2 (or p1 & p2): inward paired-end reads.
o1 & o2 (or l1 & l2): outward paired-end reads.
GS: genome size estimation in bp (used for memory pre-allocation), suggest a large value if possible.(e.g. ~ 2x genome size)
LD: load a saved k-mer graph. 
BC: 1: build contigs.0: don't build.
KmerTable: 1 if you want to output the kmer table.
NodeCovTh: coverage threshold for spurious k-mers, support 0-16. (default 1)
EdgeCovTh: coverage threshold for spurious links, support 0-16. (default 0)
PathCovTh: coverage threshold for spurious paths in the breadth-first search, support 0-100.
TrimLen: trim long sequences to this length.
TrimN: throw away reads with more than this number of Ns.
TrimQual: trim off tails with quality scores lower than this.
QualBase: lowest quality score value (in ASCII value) in the current fastq scoring system, default: '!'.

For error correction:
Denoise: use 1 to call the error correction module. (default 0)
H: hybrid mode. 0 (Default): reads will be trimmed at the ends to ensure denoising accuracy (*MUST* set 0 for the last round). 1: reads will not be trimmed at the ends; 
CovTh: coverage threshold for an error. A k-mer with coverage < this value will be checked. Setting 0 will allow the program to choose a value based on the coverage histogram.
CorrTh: coverage threshold for a correct k-mer candidate. A k-mer with coverage >= this value will be considered a candidate for correction. Setting 0 will allow the program to choose a value based on the coverage histogram.

For scaffolding:
ExpCov: expected average k-mer coverage in a unique contig. Used for scaffolding.
Scaffold: 1: scaffolding with paired reads. 0: single end assembly.
LinkCovTh: coverage threshold for spurious paired-end links, support 0-100. (default 5)
Iter_Scaffold: 1: iterative scaffolding using the already built scaffolds (/super contigs). 0: one round scaffolding.
For mate pair scaffolding:
InsertSize: estimated insert size of the current pair.
i1_mp & i2_mp: inward mate paired reads (large insert sizes >10k, for shorter libraries omit "_mp").
o1_mp & o2_mp : outward paired-end reads (large insert sizes >10k, for shorter libraries omit "_mp").

Scanning the dataset.
1/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R1_001_val_1_val_1.fastq
Reading: 50000000
Reading: 100000000
Reading: 150000000
2/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R2_001_val_2_val_2.fastq
Reading: 200000000
Reading: 250000000
Reading: 300000000
3/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R1_001_val_1_val_1.fastq
Reading: 350000000
Reading: 400000000
Reading: 450000000
Reading: 500000000
4/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R2_001_val_2_val_2.fastq
Reading: 550000000
Reading: 600000000
Reading: 650000000
Reading: 700000000
Reading: 750000000
5/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R1_001_val_1_val_1.fastq
6/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R2_001_val_2_val_2.fastq
7/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R1_001_val_1_val_1.fastq
8/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R2_001_val_2_val_2.fastq
9/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R1_001_val_1_val_1.fastq
10/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R2_001_val_2_val_2.fastq
11/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R1_001_val_1_val_1.fastq
12/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R2_001_val_2_val_2.fastq
13/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R1_001_val_1_val_1.fastq
14/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R2_001_val_2_val_2.fastq
15/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R1_001_val_1_val_1.fastq
16/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R2_001_val_2_val_2.fastq
17/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq
Reading: 800000000
Reading: 850000000
Reading: 900000000
Reading: 950000000
Reading: 1000000000
Reading: 1050000000
18/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq
Reading: 1100000000
Reading: 1150000000
Reading: 1200000000
Reading: 1250000000
Reading: 1300000000
Reading: 1350000000
19/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq
Reading: 1400000000
Reading: 1450000000
Reading: 1500000000
Reading: 1550000000
Reading: 1600000000
Reading: 1650000000
Reading: 1700000000
Reading: 1750000000
20/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq
Reading: 1800000000
Reading: 1850000000
Reading: 1900000000
Reading: 1950000000
Reading: 2000000000
Reading: 2050000000
Reading: 2100000000
21/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq
Reading: 2150000000
Reading: 2200000000
Reading: 2250000000
Reading: 2300000000
Reading: 2350000000
Reading: 2400000000
Reading: 2450000000
Reading: 2500000000
Reading: 2550000000
Reading: 2600000000
Reading: 2650000000
Reading: 2700000000
Reading: 2750000000
Reading: 2800000000
Reading: 2850000000
22/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq
Reading: 2900000000
Reading: 2950000000
Reading: 3000000000
Reading: 3050000000
Reading: 3100000000
Reading: 3150000000
Reading: 3200000000
Reading: 3250000000
Reading: 3300000000
Reading: 3350000000
Reading: 3400000000
Reading: 3450000000
Reading: 3500000000
Reading: 3550000000
Reading: 3600000000
23/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq
Reading: 3650000000
Reading: 3700000000
Reading: 3750000000
Reading: 3800000000
Reading: 3850000000
Reading: 3900000000
Reading: 3950000000
Reading: 4000000000
Reading: 4050000000
Reading: 4100000000
Reading: 4150000000
Reading: 4200000000
Reading: 4250000000
Reading: 4300000000
Reading: 4350000000
Reading: 4400000000
Reading: 4450000000
Reading: 4500000000
24/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq
Reading: 4550000000
Reading: 4600000000
Reading: 4650000000
Reading: 4700000000
Reading: 4750000000
Reading: 4800000000
Reading: 4850000000
Reading: 4900000000
Reading: 4950000000
Reading: 5000000000
Reading: 5050000000
Reading: 5100000000
Reading: 5150000000
Reading: 5200000000
Reading: 5250000000
Reading: 5300000000
Reading: 5350000000
25/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq
Reading: 5400000000
Reading: 5450000000
Reading: 5500000000
Reading: 5550000000
Reading: 5600000000
26/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq
Reading: 5650000000
Reading: 5700000000
Reading: 5750000000
Reading: 5800000000
Reading: 5850000000
27/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq
Reading: 5900000000
Reading: 5950000000
Reading: 6000000000
Reading: 6050000000
Reading: 6100000000
Reading: 6150000000
28/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq
Reading: 6200000000
Reading: 6250000000
Reading: 6300000000
Reading: 6350000000
Reading: 6400000000
Reading: 6450000000
29/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L001_R1_001_val_1_val_1.fastq
30/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L001_R2_001_val_2_val_2.fastq
31/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L002_R1_001_val_1_val_1.fastq
32/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L002_R2_001_val_2_val_2.fastq
33/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L001_R1_001_val_1_val_1.fastq
34/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L001_R2_001_val_2_val_2.fastq
35/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L002_R1_001_val_1_val_1.fastq
36/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L002_R2_001_val_2_val_2.fastq
Scan finished.
Building the sparse k-mer graph, round: 1
1/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R1_001_val_1_val_1.fastq
Reading: 10000000
Memory used: 78 MB.
Reading time: 11472 secs.
Reading: 20000000
Memory used: 224 MB.
Reading time: 11639 secs.
Reading: 30000000
Memory used: 417 MB.
Reading time: 11804 secs.
Reading: 40000000
Memory used: 638 MB.
Reading time: 11964 secs.
Reading: 50000000
Memory used: 862 MB.
Reading time: 12128 secs.
Reading: 60000000
Memory used: 1116 MB.
Reading time: 12288 secs.
Reading: 70000000
Memory used: 1368 MB.
Reading time: 12449 secs.
Reading: 90000000
Memory used: 1882 MB.
Reading time: 12773 secs.
Reading: 100000000
Memory used: 2145 MB.
Reading time: 12937 secs.
Reading: 110000000
Memory used: 2390 MB.
Reading time: 13101 secs.
Reading: 130000000
Memory used: 2889 MB.
Reading time: 13428 secs.
Reading: 140000000
Memory used: 3123 MB.
Reading time: 13592 secs.
Reading: 150000000
Memory used: 3340 MB.
Reading time: 13755 secs.
2/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R2_001_val_2_val_2.fastq
Reading: 170000000
Memory used: 3759 MB.
Reading time: 14088 secs.
Reading: 190000000
Memory used: 4141 MB.
Reading time: 14445 secs.
Reading: 220000000
Memory used: 4675 MB.
Reading time: 14984 secs.
Reading: 230000000
Memory used: 4838 MB.
Reading time: 15164 secs.
Reading: 250000000
Memory used: 5154 MB.
Reading time: 15527 secs.
Reading: 270000000
Memory used: 5412 MB.
Reading time: 15902 secs.
Reading: 280000000
Memory used: 5548 MB.
Reading time: 16086 secs.
Reading: 290000000
Memory used: 5679 MB.
Reading time: 16270 secs.
Reading: 320000000
Memory used: 6038 MB.
Reading time: 16831 secs.
Reading: 330000000
Memory used: 6152 MB.
Reading time: 17017 secs.
3/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R1_001_val_1_val_1.fastq
Reading: 340000000
Memory used: 6279 MB.
Reading time: 17200 secs.
Reading: 350000000
Memory used: 6414 MB.
Reading time: 17379 secs.
Reading: 360000000
Memory used: 6539 MB.
Reading time: 17558 secs.
Reading: 390000000
Memory used: 6888 MB.
Reading time: 18107 secs.
Reading: 410000000
Memory used: 7099 MB.
Reading time: 18471 secs.
Reading: 420000000
Memory used: 7200 MB.
Reading time: 18655 secs.
Reading: 430000000
Memory used: 7295 MB.
Reading time: 18840 secs.
Reading: 460000000
Memory used: 7555 MB.
Reading time: 19399 secs.
Reading: 480000000
Memory used: 7712 MB.
Reading time: 19777 secs.
Reading: 490000000
Memory used: 7788 MB.
Reading time: 19964 secs.
Reading: 500000000
Memory used: 7864 MB.
Reading time: 20153 secs.
Reading: 510000000
Memory used: 7934 MB.
Reading time: 20343 secs.
4/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R2_001_val_2_val_2.fastq
Reading: 570000000
Memory used: 8308 MB.
Reading time: 21519 secs.
Reading: 580000000
Memory used: 8364 MB.
Reading time: 21723 secs.
Reading: 600000000
Memory used: 8470 MB.
Reading time: 22128 secs.
Reading: 640000000
Memory used: 8671 MB.
Reading time: 22938 secs.
Reading: 650000000
Memory used: 8717 MB.
Reading time: 23140 secs.
Reading: 660000000
Memory used: 8762 MB.
Reading time: 23344 secs.
Reading: 670000000
Memory used: 8804 MB.
Reading time: 23547 secs.
Reading: 680000000
Memory used: 8848 MB.
Reading time: 23750 secs.
Reading: 700000000
Memory used: 8936 MB.
Reading time: 24149 secs.
Reading: 710000000
Memory used: 8979 MB.
Reading time: 24349 secs.
Reading: 720000000
Memory used: 9022 MB.
Reading time: 24548 secs.
Reading: 730000000
Memory used: 9063 MB.
Reading time: 24747 secs.
Reading: 750000000
Memory used: 9146 MB.
Reading time: 25144 secs.
5/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R1_001_val_1_val_1.fastq
6/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R2_001_val_2_val_2.fastq
7/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R1_001_val_1_val_1.fastq
8/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R2_001_val_2_val_2.fastq
9/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R1_001_val_1_val_1.fastq
10/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R2_001_val_2_val_2.fastq
Reading: 760000000
Memory used: 9199 MB.
Reading time: 25359 secs.
11/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R1_001_val_1_val_1.fastq
12/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R2_001_val_2_val_2.fastq
13/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R1_001_val_1_val_1.fastq
14/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R2_001_val_2_val_2.fastq
15/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R1_001_val_1_val_1.fastq
16/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R2_001_val_2_val_2.fastq
17/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq
Reading: 770000000
Memory used: 9251 MB.
Reading time: 25580 secs.
Reading: 780000000
Memory used: 9287 MB.
Reading time: 25782 secs.
Reading: 800000000
Memory used: 9358 MB.
Reading time: 26183 secs.
Reading: 810000000
Memory used: 9391 MB.
Reading time: 26382 secs.
Reading: 820000000
Memory used: 9425 MB.
Reading time: 26583 secs.
Reading: 830000000
Memory used: 9459 MB.
Reading time: 26781 secs.
Reading: 840000000
Memory used: 9491 MB.
Reading time: 26979 secs.
Reading: 860000000
Memory used: 9554 MB.
Reading time: 27381 secs.
Reading: 890000000
Memory used: 9647 MB.
Reading time: 27974 secs.
Reading: 900000000
Memory used: 9679 MB.
Reading time: 28171 secs.
Reading: 910000000
Memory used: 9709 MB.
Reading time: 28366 secs.
Reading: 920000000
Memory used: 9739 MB.
Reading time: 28559 secs.
Reading: 930000000
Memory used: 9769 MB.
Reading time: 28757 secs.
Reading: 970000000
Memory used: 9891 MB.
Reading time: 29542 secs.
Reading: 980000000
Memory used: 9922 MB.
Reading time: 29737 secs.
Reading: 990000000
Memory used: 9952 MB.
Reading time: 29930 secs.
Reading: 1000000000
Memory used: 9982 MB.
Reading time: 30122 secs.
Reading: 1010000000
Memory used: 10012 MB.
Reading time: 30315 secs.
Reading: 1020000000
Memory used: 10042 MB.
Reading time: 30508 secs.
Reading: 1060000000
Memory used: 10160 MB.
Reading time: 31280 secs.
Reading: 1070000000
Memory used: 10189 MB.
Reading time: 31471 secs.
18/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq
Reading: 1080000000
Memory used: 10218 MB.
Reading time: 31667 secs.
Reading: 1100000000
Memory used: 10278 MB.
Reading time: 32086 secs.
Reading: 1110000000
Memory used: 10309 MB.
Reading time: 32293 secs.
Reading: 1130000000
Memory used: 10371 MB.
Reading time: 32711 secs.
Reading: 1140000000
Memory used: 10403 MB.
Reading time: 32920 secs.
Reading: 1160000000
Memory used: 10468 MB.
Reading time: 33340 secs.
Reading: 1190000000
Memory used: 10569 MB.
Reading time: 33968 secs.
Reading: 1210000000
Memory used: 10638 MB.
Reading time: 34389 secs.
Reading: 1230000000
Memory used: 10708 MB.
Reading time: 34813 secs.
Reading: 1250000000
Memory used: 10779 MB.
Reading time: 35252 secs.
Reading: 1260000000
Memory used: 10815 MB.
Reading time: 35471 secs.
Reading: 1270000000
Memory used: 10851 MB.
Reading time: 35689 secs.
Reading: 1290000000
Memory used: 10928 MB.
Reading time: 36124 secs.
Reading: 1300000000
Memory used: 10967 MB.
Reading time: 36339 secs.
Reading: 1310000000
Memory used: 11005 MB.
Reading time: 36556 secs.
Reading: 1320000000
Memory used: 11045 MB.
Reading time: 36773 secs.
Reading: 1330000000
Memory used: 11086 MB.
Reading time: 36990 secs.
Reading: 1340000000
Memory used: 11126 MB.
Reading time: 37207 secs.
Reading: 1350000000
Memory used: 11166 MB.
Reading time: 37425 secs.
Reading: 1360000000
Memory used: 11208 MB.
Reading time: 37641 secs.
Reading: 1370000000
Memory used: 11250 MB.
Reading time: 37858 secs.
19/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq
Reading: 1390000000
Memory used: 11332 MB.
Reading time: 38291 secs.
Reading: 1400000000
Memory used: 11370 MB.
Reading time: 38497 secs.
Reading: 1410000000
Memory used: 11407 MB.
Reading time: 38700 secs.
Reading: 1440000000
Memory used: 11513 MB.
Reading time: 39304 secs.
Reading: 1450000000
Memory used: 11547 MB.
Reading time: 39505 secs.
Reading: 1460000000
Memory used: 11581 MB.
Reading time: 39704 secs.
Reading: 1490000000
Memory used: 11681 MB.
Reading time: 40306 secs.
Reading: 1500000000
Memory used: 11714 MB.
Reading time: 40508 secs.
Reading: 1510000000
Memory used: 11746 MB.
Reading time: 40709 secs.
Reading: 1520000000
Memory used: 11778 MB.
Reading time: 40908 secs.
Reading: 1530000000
Memory used: 11810 MB.
Reading time: 41111 secs.
Reading: 1540000000
Memory used: 11842 MB.
Reading time: 41319 secs.
Reading: 1550000000
Memory used: 11874 MB.
Reading time: 41525 secs.
Reading: 1560000000
Memory used: 11905 MB.
Reading time: 41728 secs.
Reading: 1570000000
Memory used: 11936 MB.
Reading time: 41932 secs.
Reading: 1600000000
Memory used: 12032 MB.
Reading time: 42542 secs.
Reading: 1610000000
Memory used: 12064 MB.
Reading time: 42744 secs.
Reading: 1620000000
Memory used: 12097 MB.
Reading time: 42946 secs.
Reading: 1630000000
Memory used: 12130 MB.
Reading time: 43152 secs.
Reading: 1660000000
Memory used: 12227 MB.
Reading time: 43760 secs.
Reading: 1670000000
Memory used: 12260 MB.
Reading time: 43962 secs.
Reading: 1680000000
Memory used: 12291 MB.
Reading time: 44166 secs.
Reading: 1690000000
Memory used: 12323 MB.
Reading time: 44369 secs.
Reading: 1700000000
Memory used: 12355 MB.
Reading time: 44574 secs.
Reading: 1710000000
Memory used: 12387 MB.
Reading time: 44778 secs.
Reading: 1730000000
Memory used: 12453 MB.
Reading time: 45189 secs.
Reading: 1740000000
Memory used: 12484 MB.
Reading time: 45394 secs.
Reading: 1750000000
Memory used: 12516 MB.
Reading time: 45598 secs.
Reading: 1760000000
Memory used: 12547 MB.
Reading time: 45803 secs.
20/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq
Reading: 1770000000
Memory used: 12582 MB.
Reading time: 46014 secs.
Reading: 1780000000
Memory used: 12620 MB.
Reading time: 46232 secs.
Reading: 1790000000
Memory used: 12658 MB.
Reading time: 46450 secs.
Reading: 1800000000
Memory used: 12697 MB.
Reading time: 46667 secs.
Reading: 1810000000
Memory used: 12737 MB.
Reading time: 46884 secs.
Reading: 1820000000
Memory used: 12777 MB.
Reading time: 47103 secs.
Reading: 1830000000
Memory used: 12817 MB.
Reading time: 47321 secs.
Reading: 1840000000
Memory used: 12857 MB.
Reading time: 47538 secs.
Reading: 1850000000
Memory used: 12897 MB.
Reading time: 47755 secs.
Reading: 1860000000
Memory used: 12939 MB.
Reading time: 47972 secs.
Reading: 1870000000
Memory used: 12980 MB.
Reading time: 48189 secs.
Reading: 1880000000
Memory used: 13021 MB.
Reading time: 48403 secs.
Reading: 1890000000
Memory used: 13062 MB.
Reading time: 48617 secs.
Reading: 1900000000
Memory used: 13104 MB.
Reading time: 48831 secs.
Reading: 1910000000
Memory used: 13147 MB.
Reading time: 49045 secs.
Reading: 1920000000
Memory used: 13188 MB.
Reading time: 49260 secs.
Reading: 1930000000
Memory used: 13230 MB.
Reading time: 49476 secs.
Reading: 1950000000
Memory used: 13316 MB.
Reading time: 49908 secs.
Reading: 1960000000
Memory used: 13360 MB.
Reading time: 50126 secs.
Reading: 1970000000
Memory used: 13406 MB.
Reading time: 50346 secs.
Reading: 1980000000
Memory used: 13451 MB.
Reading time: 50563 secs.
Reading: 1990000000
Memory used: 13499 MB.
Reading time: 50786 secs.
Reading: 2000000000
Memory used: 13546 MB.
Reading time: 51008 secs.
Reading: 2010000000
Memory used: 13591 MB.
Reading time: 51226 secs.
Reading: 2070000000
Memory used: 13869 MB.
Reading time: 52545 secs.
Reading: 2090000000
Memory used: 13963 MB.
Reading time: 52985 secs.
Reading: 2100000000
Memory used: 14011 MB.
Reading time: 53207 secs.
Reading: 2110000000
Memory used: 14058 MB.
Reading time: 53429 secs.
Reading: 2120000000
Memory used: 14106 MB.
Reading time: 53652 secs.
Reading: 2130000000
Memory used: 14153 MB.
Reading time: 53872 secs.
21/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq
Reading: 2150000000
Memory used: 14244 MB.
Reading time: 54296 secs.
Reading: 2170000000
Memory used: 14313 MB.
Reading time: 54669 secs.
Reading: 2180000000
Memory used: 14347 MB.
Reading time: 54856 secs.
Reading: 2190000000
Memory used: 14381 MB.
Reading time: 55041 secs.
Reading: 2200000000
Memory used: 14415 MB.
Reading time: 55228 secs.
Reading: 2220000000
Memory used: 14485 MB.
Reading time: 55596 secs.
Reading: 2230000000
Memory used: 14520 MB.
Reading time: 55780 secs.
Reading: 2270000000
Memory used: 14666 MB.
Reading time: 56526 secs.
Reading: 2280000000
Memory used: 14703 MB.
Reading time: 56712 secs.
Reading: 2300000000
Memory used: 14776 MB.
Reading time: 57084 secs.
Reading: 2310000000
Memory used: 14814 MB.
Reading time: 57267 secs.
Reading: 2330000000
Memory used: 14891 MB.
Reading time: 57630 secs.
Reading: 2350000000
Memory used: 14975 MB.
Reading time: 58009 secs.
Reading: 2370000000
Memory used: 15054 MB.
Reading time: 58380 secs.
Reading: 2380000000
Memory used: 15093 MB.
Reading time: 58568 secs.
Reading: 2400000000
Memory used: 15173 MB.
Reading time: 58941 secs.
Reading: 2420000000
Memory used: 15254 MB.
Reading time: 59311 secs.
Reading: 2430000000
Memory used: 15297 MB.
Reading time: 59498 secs.
Reading: 2440000000
Memory used: 15338 MB.
Reading time: 59687 secs.
Reading: 2450000000
Memory used: 15381 MB.
Reading time: 59874 secs.
Reading: 2470000000
Memory used: 15466 MB.
Reading time: 60248 secs.
Reading: 2480000000
Memory used: 15507 MB.
Reading time: 60436 secs.
Reading: 2490000000
Memory used: 15549 MB.
Reading time: 60620 secs.
Reading: 2500000000
Memory used: 15592 MB.
Reading time: 60803 secs.
Reading: 2510000000
Memory used: 15635 MB.
Reading time: 60984 secs.
Reading: 2520000000
Memory used: 15679 MB.
Reading time: 61167 secs.
Reading: 2540000000
Memory used: 15771 MB.
Reading time: 61549 secs.
Reading: 2550000000
Memory used: 15817 MB.
Reading time: 61738 secs.
Reading: 2560000000
Memory used: 15862 MB.
Reading time: 61928 secs.
Reading: 2570000000
Memory used: 15907 MB.
Reading time: 62118 secs.
Reading: 2580000000
Memory used: 15952 MB.
Reading time: 62308 secs.
Reading: 2590000000
Memory used: 15998 MB.
Reading time: 62496 secs.
Reading: 2600000000
Memory used: 16044 MB.
Reading time: 62682 secs.
Reading: 2610000000
Memory used: 16091 MB.
Reading time: 62868 secs.
Reading: 2620000000
Memory used: 16140 MB.
Reading time: 63057 secs.
Reading: 2650000000
Memory used: 16283 MB.
Reading time: 63628 secs.
Reading: 2660000000
Memory used: 16329 MB.
Reading time: 63818 secs.
Reading: 2670000000
Memory used: 16376 MB.
Reading time: 64007 secs.
Reading: 2710000000
Memory used: 16571 MB.
Reading time: 64760 secs.
Reading: 2740000000
Memory used: 16718 MB.
Reading time: 65330 secs.
Reading: 2770000000
Memory used: 16870 MB.
Reading time: 65908 secs.
Reading: 2780000000
Memory used: 16921 MB.
Reading time: 66099 secs.
Reading: 2790000000
Memory used: 16972 MB.
Reading time: 66289 secs.
Reading: 2850000000
Memory used: 17284 MB.
Reading time: 67451 secs.
Reading: 2870000000
Memory used: 17390 MB.
Reading time: 67834 secs.
Reading: 2890000000
Memory used: 17499 MB.
Reading time: 68218 secs.
22/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq
Reading: 2900000000
Memory used: 17563 MB.
Reading time: 68433 secs.
Reading: 2910000000
Memory used: 17625 MB.
Reading time: 68646 secs.
Reading: 2930000000
Memory used: 17751 MB.
Reading time: 69070 secs.
Reading: 2960000000
Memory used: 17944 MB.
Reading time: 69700 secs.
Reading: 2970000000
Memory used: 18010 MB.
Reading time: 69906 secs.
Reading: 2980000000
Memory used: 18079 MB.
Reading time: 70114 secs.
Reading: 3000000000
Memory used: 18215 MB.
Reading time: 70528 secs.
Reading: 3010000000
Memory used: 18282 MB.
Reading time: 70734 secs.
Reading: 3020000000
Memory used: 18350 MB.
Reading time: 70940 secs.
Reading: 3050000000
Memory used: 18557 MB.
Reading time: 71563 secs.
Reading: 3060000000
Memory used: 18628 MB.
Reading time: 71768 secs.
Reading: 3070000000
Memory used: 18700 MB.
Reading time: 71973 secs.
Reading: 3090000000
Memory used: 18847 MB.
Reading time: 72392 secs.
Reading: 3110000000
Memory used: 18991 MB.
Reading time: 72808 secs.
Reading: 3120000000
Memory used: 19064 MB.
Reading time: 73015 secs.
Reading: 3170000000
Memory used: 19437 MB.
Reading time: 74050 secs.
Reading: 3200000000
Memory used: 19666 MB.
Reading time: 74675 secs.
Reading: 3210000000
Memory used: 19743 MB.
Reading time: 74884 secs.
Reading: 3230000000
Memory used: 19895 MB.
Reading time: 75303 secs.
Reading: 3250000000
Memory used: 20051 MB.
Reading time: 75719 secs.
Reading: 3260000000
Memory used: 20131 MB.
Reading time: 75927 secs.
Reading: 3280000000
Memory used: 20296 MB.
Reading time: 76355 secs.
Reading: 3290000000
Memory used: 20380 MB.
Reading time: 76572 secs.
Reading: 3300000000
Memory used: 20463 MB.
Reading time: 76789 secs.
Reading: 3320000000
Memory used: 20631 MB.
Reading time: 77228 secs.
Reading: 3340000000
Memory used: 20802 MB.
Reading time: 77662 secs.
Reading: 3350000000
Memory used: 20889 MB.
Reading time: 77877 secs.
Reading: 3360000000
Memory used: 20978 MB.
Reading time: 78097 secs.
Reading: 3380000000
Memory used: 21148 MB.
Reading time: 78531 secs.
Reading: 3390000000
Memory used: 21234 MB.
Reading time: 78747 secs.
Reading: 3450000000
Memory used: 21759 MB.
Reading time: 80048 secs.
Reading: 3460000000
Memory used: 21849 MB.
Reading time: 80273 secs.
Reading: 3470000000
Memory used: 21939 MB.
Reading time: 80494 secs.
Reading: 3480000000
Memory used: 22029 MB.
Reading time: 80713 secs.
Reading: 3500000000
Memory used: 22209 MB.
Reading time: 81155 secs.
Reading: 3510000000
Memory used: 22301 MB.
Reading time: 81377 secs.
Reading: 3520000000
Memory used: 22393 MB.
Reading time: 81599 secs.
Reading: 3540000000
Memory used: 22581 MB.
Reading time: 82046 secs.
Reading: 3550000000
Memory used: 22675 MB.
Reading time: 82271 secs.
Reading: 3560000000
Memory used: 22767 MB.
Reading time: 82495 secs.
Reading: 3570000000
Memory used: 22860 MB.
Reading time: 82718 secs.
Reading: 3580000000
Memory used: 22954 MB.
Reading time: 82945 secs.
Reading: 3590000000
Memory used: 23045 MB.
Reading time: 83171 secs.
Reading: 3600000000
Memory used: 23138 MB.
Reading time: 83396 secs.
Reading: 3610000000
Memory used: 23233 MB.
Reading time: 83623 secs.
Reading: 3620000000
Memory used: 23332 MB.
Reading time: 83850 secs.
Reading: 3630000000
Memory used: 23431 MB.
Reading time: 84077 secs.
23/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq
Reading: 3640000000
Memory used: 23521 MB.
Reading time: 84306 secs.
Reading: 3650000000
Memory used: 23596 MB.
Reading time: 84533 secs.
Reading: 3680000000
Memory used: 23791 MB.
Reading time: 85194 secs.
Reading: 3720000000
Memory used: 24047 MB.
Reading time: 86063 secs.
Reading: 3740000000
Memory used: 24177 MB.
Reading time: 86492 secs.
Reading: 3750000000
Memory used: 24242 MB.
Reading time: 86708 secs.
Reading: 3760000000
Memory used: 24304 MB.
Reading time: 86926 secs.
Reading: 3790000000
Memory used: 24490 MB.
Reading time: 87580 secs.
Reading: 3820000000
Memory used: 24677 MB.
Reading time: 88231 secs.
Reading: 3840000000
Memory used: 24803 MB.
Reading time: 88658 secs.
Reading: 3850000000
Memory used: 24869 MB.
Reading time: 88872 secs.
Reading: 3870000000
Memory used: 25004 MB.
Reading time: 89310 secs.
Reading: 3880000000
Memory used: 25066 MB.
Reading time: 89528 secs.
Reading: 3890000000
Memory used: 25127 MB.
Reading time: 89745 secs.
Reading: 3900000000
Memory used: 25188 MB.
Reading time: 89966 secs.
Reading: 3910000000
Memory used: 25249 MB.
Reading time: 90186 secs.
Reading: 3920000000
Memory used: 25311 MB.
Reading time: 90403 secs.
Reading: 3930000000
Memory used: 25373 MB.
Reading time: 90620 secs.
Reading: 3940000000
Memory used: 25435 MB.
Reading time: 90836 secs.
Reading: 3950000000
Memory used: 25497 MB.
Reading time: 91054 secs.
Reading: 3960000000
Memory used: 25562 MB.
Reading time: 91269 secs.
Reading: 3970000000
Memory used: 25626 MB.
Reading time: 91486 secs.
Reading: 3980000000
Memory used: 25687 MB.
Reading time: 91709 secs.
Reading: 4000000000
Memory used: 25809 MB.
Reading time: 92158 secs.
Reading: 4020000000
Memory used: 25933 MB.
Reading time: 92603 secs.
Reading: 4030000000
Memory used: 25996 MB.
Reading time: 92825 secs.
Reading: 4060000000
Memory used: 26184 MB.
Reading time: 93491 secs.
Reading: 4070000000
Memory used: 26251 MB.
Reading time: 93711 secs.
Reading: 4080000000
Memory used: 26315 MB.
Reading time: 93935 secs.
Reading: 4090000000
Memory used: 26378 MB.
Reading time: 94162 secs.
Reading: 4100000000
Memory used: 26443 MB.
Reading time: 94388 secs.
Reading: 4110000000
Memory used: 26507 MB.
Reading time: 94616 secs.
Reading: 4120000000
Memory used: 26571 MB.
Reading time: 94841 secs.
Reading: 4130000000
Memory used: 26635 MB.
Reading time: 95065 secs.
Reading: 4150000000
Memory used: 26768 MB.
Reading time: 95509 secs.
Reading: 4160000000
Memory used: 26836 MB.
Reading time: 95733 secs.
Reading: 4170000000
Memory used: 26903 MB.
Reading time: 95957 secs.
Reading: 4180000000
Memory used: 26973 MB.
Reading time: 96181 secs.
Reading: 4190000000
Memory used: 27046 MB.
Reading time: 96410 secs.
Reading: 4210000000
Memory used: 27177 MB.
Reading time: 96863 secs.
Reading: 4220000000
Memory used: 27245 MB.
Reading time: 97090 secs.
Reading: 4230000000
Memory used: 27313 MB.
Reading time: 97315 secs.
Reading: 4240000000
Memory used: 27378 MB.
Reading time: 97535 secs.
Reading: 4250000000
Memory used: 27444 MB.
Reading time: 97754 secs.
Reading: 4270000000
Memory used: 27573 MB.
Reading time: 98194 secs.
Reading: 4290000000
Memory used: 27707 MB.
Reading time: 98628 secs.
Reading: 4300000000
Memory used: 27771 MB.
Reading time: 98846 secs.
Reading: 4320000000
Memory used: 27894 MB.
Reading time: 99288 secs.
Reading: 4330000000
Memory used: 27957 MB.
Reading time: 99507 secs.
Reading: 4350000000
Memory used: 28084 MB.
Reading time: 99940 secs.
Reading: 4370000000
Memory used: 28218 MB.
Reading time: 100377 secs.
Reading: 4380000000
Memory used: 28282 MB.
Reading time: 100594 secs.
Reading: 4390000000
Memory used: 28347 MB.
Reading time: 100811 secs.
Reading: 4400000000
Memory used: 28415 MB.
Reading time: 101029 secs.
Reading: 4410000000
Memory used: 28490 MB.
Reading time: 101252 secs.
Reading: 4430000000
Memory used: 28621 MB.
Reading time: 101698 secs.
Reading: 4440000000
Memory used: 28683 MB.
Reading time: 101920 secs.
Reading: 4490000000
Memory used: 28997 MB.
Reading time: 103024 secs.
24/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq
Reading: 4520000000
Memory used: 29208 MB.
Reading time: 103699 secs.
Reading: 4540000000
Memory used: 29383 MB.
Reading time: 104172 secs.
Reading: 4560000000
Memory used: 29558 MB.
Reading time: 104643 secs.
Reading: 4590000000
Memory used: 29827 MB.
Reading time: 105348 secs.
Reading: 4610000000
Memory used: 30011 MB.
Reading time: 105819 secs.
Reading: 4620000000
Memory used: 30106 MB.
Reading time: 106055 secs.
Reading: 4630000000
Memory used: 30196 MB.
Reading time: 106294 secs.
Reading: 4640000000
Memory used: 30285 MB.
Reading time: 106535 secs.
Reading: 4650000000
Memory used: 30374 MB.
Reading time: 106775 secs.
Reading: 4660000000
Memory used: 30462 MB.
Reading time: 107015 secs.
Reading: 4680000000
Memory used: 30641 MB.
Reading time: 107494 secs.
Reading: 4710000000
Memory used: 30915 MB.
Reading time: 108214 secs.
Reading: 4730000000
Memory used: 31109 MB.
Reading time: 108695 secs.
Reading: 4750000000
Memory used: 31291 MB.
Reading time: 109181 secs.
Reading: 4760000000
Memory used: 31380 MB.
Reading time: 109424 secs.
Reading: 4780000000
Memory used: 31560 MB.
Reading time: 109912 secs.
Reading: 4800000000
Memory used: 31742 MB.
Reading time: 110397 secs.
Reading: 4810000000
Memory used: 31834 MB.
Reading time: 110642 secs.
Reading: 4830000000
Memory used: 32019 MB.
Reading time: 111131 secs.
Reading: 4840000000
Memory used: 32115 MB.
Reading time: 111375 secs.
Reading: 4850000000
Memory used: 32209 MB.
Reading time: 111623 secs.
Reading: 4860000000
Memory used: 32299 MB.
Reading time: 111873 secs.
Reading: 4870000000
Memory used: 32389 MB.
Reading time: 112122 secs.
Reading: 4890000000
Memory used: 32574 MB.
Reading time: 112619 secs.
Reading: 4900000000
Memory used: 32668 MB.
Reading time: 112869 secs.
Reading: 4910000000
Memory used: 32762 MB.
Reading time: 113118 secs.
Reading: 4930000000
Memory used: 32949 MB.
Reading time: 113617 secs.
Reading: 4950000000
Memory used: 33144 MB.
Reading time: 114117 secs.
Reading: 4960000000
Memory used: 33241 MB.
Reading time: 114371 secs.
Reading: 4970000000
Memory used: 33343 MB.
Reading time: 114627 secs.
Reading: 4980000000
Memory used: 33446 MB.
Reading time: 114883 secs.
Reading: 4990000000
Memory used: 33546 MB.
Reading time: 115138 secs.
Reading: 5000000000
Memory used: 33645 MB.
Reading time: 115398 secs.
Reading: 5010000000
Memory used: 33747 MB.
Reading time: 115655 secs.
Reading: 5020000000
Memory used: 33854 MB.
Reading time: 115911 secs.
Reading: 5040000000
Memory used: 34071 MB.
Reading time: 116424 secs.
Reading: 5050000000
Memory used: 34178 MB.
Reading time: 116678 secs.
Reading: 5060000000
Memory used: 34288 MB.
Reading time: 116933 secs.
Reading: 5070000000
Memory used: 34385 MB.
Reading time: 117185 secs.
Reading: 5080000000
Memory used: 34481 MB.
Reading time: 117445 secs.
Reading: 5090000000
Memory used: 34577 MB.
Reading time: 117699 secs.
Reading: 5100000000
Memory used: 34673 MB.
Reading time: 117952 secs.
Reading: 5110000000
Memory used: 34770 MB.
Reading time: 118204 secs.
Reading: 5120000000
Memory used: 34869 MB.
Reading time: 118454 secs.
Reading: 5130000000
Memory used: 34969 MB.
Reading time: 118705 secs.
Reading: 5140000000
Memory used: 35069 MB.
Reading time: 118956 secs.
Reading: 5150000000
Memory used: 35167 MB.
Reading time: 119206 secs.
Reading: 5170000000
Memory used: 35375 MB.
Reading time: 119710 secs.
Reading: 5180000000
Memory used: 35470 MB.
Reading time: 119962 secs.
Reading: 5200000000
Memory used: 35658 MB.
Reading time: 120472 secs.
Reading: 5210000000
Memory used: 35753 MB.
Reading time: 120728 secs.
Reading: 5220000000
Memory used: 35848 MB.
Reading time: 120983 secs.
Reading: 5230000000
Memory used: 35945 MB.
Reading time: 121238 secs.
Reading: 5240000000
Memory used: 36041 MB.
Reading time: 121493 secs.
Reading: 5250000000
Memory used: 36139 MB.
Reading time: 121749 secs.
Reading: 5260000000
Memory used: 36236 MB.
Reading time: 122005 secs.
Reading: 5270000000
Memory used: 36336 MB.
Reading time: 122261 secs.
Reading: 5290000000
Memory used: 36540 MB.
Reading time: 122779 secs.
Reading: 5300000000
Memory used: 36636 MB.
Reading time: 123040 secs.
Reading: 5310000000
Memory used: 36733 MB.
Reading time: 123301 secs.
Reading: 5320000000
Memory used: 36831 MB.
Reading time: 123562 secs.
Reading: 5330000000
Memory used: 36930 MB.
Reading time: 123823 secs.
Reading: 5340000000
Memory used: 37026 MB.
Reading time: 124083 secs.
Reading: 5350000000
Memory used: 37122 MB.
Reading time: 124343 secs.
Reading: 5360000000
Memory used: 37218 MB.
Reading time: 124603 secs.
Reading: 5370000000
Memory used: 37314 MB.
Reading time: 124864 secs.
25/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq
Reading: 5390000000
Memory used: 37515 MB.
Reading time: 125389 secs.
Reading: 5400000000
Memory used: 37588 MB.
Reading time: 125644 secs.
Reading: 5420000000
Memory used: 37732 MB.
Reading time: 126146 secs.
Reading: 5470000000
Memory used: 38111 MB.
Reading time: 127401 secs.
Reading: 5480000000
Memory used: 38186 MB.
Reading time: 127649 secs.
Reading: 5500000000
Memory used: 38339 MB.
Reading time: 128147 secs.
Reading: 5510000000
Memory used: 38412 MB.
Reading time: 128395 secs.
Reading: 5520000000
Memory used: 38496 MB.
Reading time: 128648 secs.
Reading: 5540000000
Memory used: 38654 MB.
Reading time: 129162 secs.
Reading: 5550000000
Memory used: 38738 MB.
Reading time: 129418 secs.
Reading: 5560000000
Memory used: 38819 MB.
Reading time: 129676 secs.
Reading: 5570000000
Memory used: 38896 MB.
Reading time: 129931 secs.
Reading: 5580000000
Memory used: 38979 MB.
Reading time: 130186 secs.
Reading: 5610000000
Memory used: 39229 MB.
Reading time: 130970 secs.
Reading: 5620000000
Memory used: 39312 MB.
Reading time: 131229 secs.
Reading: 5630000000
Memory used: 39393 MB.
Reading time: 131485 secs.
26/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq
Reading: 5640000000
Memory used: 39481 MB.
Reading time: 131739 secs.
Reading: 5650000000
Memory used: 39601 MB.
Reading time: 132020 secs.
Reading: 5660000000
Memory used: 39716 MB.
Reading time: 132299 secs.
Reading: 5690000000
Memory used: 40072 MB.
Reading time: 133126 secs.
Reading: 5700000000
Memory used: 40193 MB.
Reading time: 133398 secs.
Reading: 5710000000
Memory used: 40318 MB.
Reading time: 133669 secs.
Reading: 5720000000
Memory used: 40437 MB.
Reading time: 133935 secs.
Reading: 5730000000
Memory used: 40556 MB.
Reading time: 134198 secs.
Reading: 5740000000
Memory used: 40681 MB.
Reading time: 134462 secs.
Reading: 5750000000
Memory used: 40801 MB.
Reading time: 134724 secs.
Reading: 5770000000
Memory used: 41052 MB.
Reading time: 135247 secs.
Reading: 5780000000
Memory used: 41190 MB.
Reading time: 135516 secs.
Reading: 5800000000
Memory used: 41466 MB.
Reading time: 136051 secs.
Reading: 5810000000
Memory used: 41597 MB.
Reading time: 136317 secs.
Reading: 5820000000
Memory used: 41726 MB.
Reading time: 136581 secs.
Reading: 5830000000
Memory used: 41865 MB.
Reading time: 136848 secs.
Reading: 5840000000
Memory used: 42002 MB.
Reading time: 137116 secs.
Reading: 5850000000
Memory used: 42138 MB.
Reading time: 137383 secs.
Reading: 5860000000
Memory used: 42279 MB.
Reading time: 137650 secs.
27/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq
Reading: 5900000000
Memory used: 42789 MB.
Reading time: 138713 secs.
Reading: 5920000000
Memory used: 42950 MB.
Reading time: 139221 secs.
Reading: 5930000000
Memory used: 43032 MB.
Reading time: 139476 secs.
Reading: 5990000000
Memory used: 43507 MB.
Reading time: 141016 secs.
Reading: 6000000000
Memory used: 43586 MB.
Reading time: 141274 secs.
Reading: 6020000000
Memory used: 43737 MB.
Reading time: 141793 secs.
Reading: 6040000000
Memory used: 43893 MB.
Reading time: 142314 secs.
Reading: 6050000000
Memory used: 43971 MB.
Reading time: 142577 secs.
Reading: 6100000000
Memory used: 44375 MB.
Reading time: 143898 secs.
Reading: 6130000000
Memory used: 44602 MB.
Reading time: 144702 secs.
Reading: 6140000000
Memory used: 44681 MB.
Reading time: 144970 secs.
Reading: 6150000000
Memory used: 44759 MB.
Reading time: 145241 secs.
Reading: 6160000000
Memory used: 44831 MB.
Reading time: 145510 secs.
Reading: 6170000000
Memory used: 44902 MB.
Reading time: 145779 secs.
28/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq
Reading: 6180000000
Memory used: 44995 MB.
Reading time: 146057 secs.
Reading: 6190000000
Memory used: 45104 MB.
Reading time: 146344 secs.
Reading: 6200000000
Memory used: 45215 MB.
Reading time: 146630 secs.
Reading: 6220000000
Memory used: 45440 MB.
Reading time: 147208 secs.
Reading: 6230000000
Memory used: 45549 MB.
Reading time: 147496 secs.
Reading: 6240000000
Memory used: 45659 MB.
Reading time: 147782 secs.
Reading: 6260000000
Memory used: 45884 MB.
Reading time: 148361 secs.
Reading: 6280000000
Memory used: 46103 MB.
Reading time: 148939 secs.
Reading: 6290000000
Memory used: 46215 MB.
Reading time: 149231 secs.
Reading: 6300000000
Memory used: 46327 MB.
Reading time: 149524 secs.
Reading: 6310000000
Memory used: 46438 MB.
Reading time: 149816 secs.
Reading: 6320000000
Memory used: 46554 MB.
Reading time: 150109 secs.
Reading: 6330000000
Memory used: 46679 MB.
Reading time: 150406 secs.
Reading: 6340000000
Memory used: 46804 MB.
Reading time: 150701 secs.
Reading: 6350000000
Memory used: 46936 MB.
Reading time: 150999 secs.
Reading: 6360000000
Memory used: 47057 MB.
Reading time: 151295 secs.
Reading: 6370000000
Memory used: 47170 MB.
Reading time: 151590 secs.
Reading: 6400000000
Memory used: 47516 MB.
Reading time: 152475 secs.
Reading: 6420000000
Memory used: 47740 MB.
Reading time: 153065 secs.
Reading: 6430000000
Memory used: 47859 MB.
Reading time: 153363 secs.
Reading: 6440000000
Memory used: 47973 MB.
Reading time: 153661 secs.
Reading: 6450000000
Memory used: 48085 MB.
Reading time: 153966 secs.
29/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L001_R1_001_val_1_val_1.fastq
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Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L001_R2_001_val_2_val_2.fastq
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Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L002_R1_001_val_1_val_1.fastq
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Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L002_R2_001_val_2_val_2.fastq
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Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L001_R1_001_val_1_val_1.fastq
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Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L001_R2_001_val_2_val_2.fastq
35/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L002_R1_001_val_1_val_1.fastq
Reading: 6470000000
Memory used: 48359 MB.
Reading time: 154631 secs.
36/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L002_R2_001_val_2_val_2.fastq
Total bases: 788272581018
Total nodes in round 1: 906872849
Reading time: 156432 secs.
Building the sparse k-mer graph, round: 2
1/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R1_001_val_1_val_1.fastq
Reading: 10000000
Reading time: 156695 secs.
Reading: 20000000
Reading time: 156952 secs.
Reading: 30000000
Reading time: 157208 secs.
Reading: 40000000
Reading time: 157458 secs.
Reading: 50000000
Reading time: 157709 secs.
Reading: 60000000
Reading time: 157957 secs.
Reading: 70000000
Reading time: 158204 secs.
Reading: 90000000
Reading time: 158702 secs.
Reading: 100000000
Reading time: 158954 secs.
Reading: 110000000
Reading time: 159201 secs.
Reading: 130000000
Reading time: 159694 secs.
Reading: 140000000
Reading time: 159941 secs.
Reading: 150000000
Reading time: 160184 secs.
2/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L001_R2_001_val_2_val_2.fastq
Reading: 170000000
Reading time: 160674 secs.
Reading: 190000000
Reading time: 161187 secs.
Reading: 220000000
Reading time: 161955 secs.
Reading: 230000000
Reading time: 162208 secs.
Reading: 250000000
Reading time: 162718 secs.
Reading: 270000000
Reading time: 163229 secs.
Reading: 280000000
Reading time: 163485 secs.
Reading: 290000000
Reading time: 163739 secs.
Reading: 320000000
Reading time: 164501 secs.
Reading: 330000000
Reading time: 164754 secs.
3/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R1_001_val_1_val_1.fastq
Reading: 340000000
Reading time: 165007 secs.
Reading: 350000000
Reading time: 165258 secs.
Reading: 360000000
Reading time: 165509 secs.
Reading: 390000000
Reading time: 166267 secs.
Reading: 410000000
Reading time: 166773 secs.
Reading: 420000000
Reading time: 167029 secs.
Reading: 430000000
Reading time: 167282 secs.
Reading: 460000000
Reading time: 168046 secs.
Reading: 480000000
Reading time: 168557 secs.
Reading: 490000000
Reading time: 168812 secs.
Reading: 500000000
Reading time: 169070 secs.
Reading: 510000000
Reading time: 169325 secs.
4/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/AD002_S9_L002_R2_001_val_2_val_2.fastq
Reading: 570000000
Reading time: 170914 secs.
Reading: 580000000
Reading time: 171186 secs.
Reading: 600000000
Reading time: 171728 secs.
Reading: 640000000
Reading time: 172803 secs.
Reading: 650000000
Reading time: 173070 secs.
Reading: 660000000
Reading time: 173340 secs.
Reading: 670000000
Reading time: 173605 secs.
Reading: 680000000
Reading time: 173873 secs.
Reading: 700000000
Reading time: 174407 secs.
Reading: 710000000
Reading time: 174676 secs.
Reading: 720000000
Reading time: 174945 secs.
Reading: 730000000
Reading time: 175213 secs.
Reading: 750000000
Reading time: 175753 secs.
5/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R1_001_val_1_val_1.fastq
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Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L001_R2_001_val_2_val_2.fastq
7/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R1_001_val_1_val_1.fastq
8/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR005_S4_L002_R2_001_val_2_val_2.fastq
9/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R1_001_val_1_val_1.fastq
10/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L001_R2_001_val_2_val_2.fastq
Reading: 760000000
Reading time: 176043 secs.
11/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R1_001_val_1_val_1.fastq
12/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR006_S3_L002_R2_001_val_2_val_2.fastq
13/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R1_001_val_1_val_1.fastq
14/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L001_R2_001_val_2_val_2.fastq
15/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R1_001_val_1_val_1.fastq
16/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR012_S1_L002_R2_001_val_2_val_2.fastq
17/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq
Reading: 770000000
Reading time: 176348 secs.
Reading: 780000000
Reading time: 176609 secs.
Reading: 800000000
Reading time: 177135 secs.
Reading: 810000000
Reading time: 177395 secs.
Reading: 820000000
Reading time: 177656 secs.
Reading: 830000000
Reading time: 177913 secs.
Reading: 840000000
Reading time: 178169 secs.
Reading: 860000000
Reading time: 178678 secs.
Reading: 890000000
Reading time: 179433 secs.
Reading: 900000000
Reading time: 179683 secs.
Reading: 910000000
Reading time: 179932 secs.
Reading: 920000000
Reading time: 180179 secs.
Reading: 930000000
Reading time: 180427 secs.
Reading: 970000000
Reading time: 181437 secs.
Reading: 980000000
Reading time: 181686 secs.
Reading: 990000000
Reading time: 181936 secs.
Reading: 1000000000
Reading time: 182183 secs.
Reading: 1010000000
Reading time: 182434 secs.
Reading: 1020000000
Reading time: 182689 secs.
Reading: 1060000000
Reading time: 183688 secs.
Reading: 1070000000
Reading time: 183935 secs.
18/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq
Reading: 1080000000
Reading time: 184182 secs.
Reading: 1100000000
Reading time: 184701 secs.
Reading: 1110000000
Reading time: 184957 secs.
Reading: 1130000000
Reading time: 185469 secs.
Reading: 1140000000
Reading time: 185724 secs.
Reading: 1160000000
Reading time: 186229 secs.
Reading: 1190000000
Reading time: 186987 secs.
Reading: 1210000000
Reading time: 187485 secs.
Reading: 1230000000
Reading time: 187985 secs.
Reading: 1250000000
Reading time: 188483 secs.
Reading: 1260000000
Reading time: 188733 secs.
Reading: 1270000000
Reading time: 188978 secs.
Reading: 1290000000
Reading time: 189474 secs.
Reading: 1300000000
Reading time: 189719 secs.
Reading: 1310000000
Reading time: 189959 secs.
Reading: 1320000000
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Reading: 1330000000
Reading time: 190445 secs.
Reading: 1340000000
Reading time: 190685 secs.
Reading: 1350000000
Reading time: 190924 secs.
Reading: 1360000000
Reading time: 191164 secs.
Reading: 1370000000
Reading time: 191403 secs.
19/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq
Reading: 1390000000
Reading time: 191875 secs.
Reading: 1400000000
Reading time: 192114 secs.
Reading: 1410000000
Reading time: 192351 secs.
Reading: 1440000000
Reading time: 193051 secs.
Reading: 1450000000
Reading time: 193286 secs.
Reading: 1460000000
Reading time: 193520 secs.
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Reading time: 194217 secs.
Reading: 1500000000
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Reading: 1510000000
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Reading: 1520000000
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Reading: 1530000000
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Reading: 1540000000
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Reading: 1550000000
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Reading: 1560000000
Reading time: 195840 secs.
Reading: 1570000000
Reading time: 196069 secs.
Reading: 1600000000
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Reading: 1610000000
Reading time: 196990 secs.
Reading: 1620000000
Reading time: 197218 secs.
Reading: 1630000000
Reading time: 197448 secs.
Reading: 1660000000
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Reading: 1670000000
Reading time: 198362 secs.
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Reading time: 198590 secs.
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Reading: 1700000000
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Reading: 1710000000
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Reading: 1730000000
Reading time: 199717 secs.
Reading: 1740000000
Reading time: 199943 secs.
Reading: 1750000000
Reading time: 200169 secs.
Reading: 1760000000
Reading time: 200393 secs.
20/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq
Reading: 1770000000
Reading time: 200621 secs.
Reading: 1780000000
Reading time: 200852 secs.
Reading: 1790000000
Reading time: 201082 secs.
Reading: 1800000000
Reading time: 201310 secs.
Reading: 1810000000
Reading time: 201537 secs.
Reading: 1820000000
Reading time: 201766 secs.
Reading: 1830000000
Reading time: 201996 secs.
Reading: 1840000000
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Reading: 1850000000
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Reading: 1860000000
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Reading: 1870000000
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Reading: 1890000000
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Reading: 1910000000
Reading time: 203826 secs.
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Reading: 1930000000
Reading time: 204286 secs.
Reading: 1950000000
Reading time: 204742 secs.
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Reading time: 204970 secs.
Reading: 1970000000
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Reading: 2000000000
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Reading: 2010000000
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Reading: 2070000000
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Reading: 2110000000
Reading time: 208398 secs.
Reading: 2120000000
Reading time: 208626 secs.
Reading: 2130000000
Reading time: 208853 secs.
21/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq
Reading: 2150000000
Reading time: 209288 secs.
Reading: 2170000000
Reading time: 209669 secs.
Reading: 2180000000
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Reading: 2190000000
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Reading: 2200000000
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Reading: 2850000000
Reading time: 222438 secs.
Reading: 2870000000
Reading time: 222811 secs.
Reading: 2890000000
Reading time: 223176 secs.
22/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq
Reading: 2900000000
Reading time: 223384 secs.
Reading: 2910000000
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Reading: 2960000000
Reading time: 224584 secs.
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Reading time: 237750 secs.
23/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq
Reading: 3640000000
Reading time: 237945 secs.
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Reading time: 254685 secs.
24/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq
Reading: 4520000000
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25/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq
Reading: 5390000000
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Reading: 5500000000
Reading time: 275472 secs.
Reading: 5510000000
Reading time: 275665 secs.
Reading: 5520000000
Reading time: 275859 secs.
Reading: 5540000000
Reading time: 276257 secs.
Reading: 5550000000
Reading time: 276453 secs.
Reading: 5560000000
Reading time: 276650 secs.
Reading: 5570000000
Reading time: 276847 secs.
Reading: 5580000000
Reading time: 277044 secs.
Reading: 5610000000
Reading time: 277632 secs.
Reading: 5620000000
Reading time: 277827 secs.
Reading: 5630000000
Reading time: 278022 secs.
26/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq
Reading: 5640000000
Reading time: 278213 secs.
Reading: 5650000000
Reading time: 278422 secs.
Reading: 5660000000
Reading time: 278630 secs.
Reading: 5690000000
Reading time: 279248 secs.
Reading: 5700000000
Reading time: 279454 secs.
Reading: 5710000000
Reading time: 279660 secs.
Reading: 5720000000
Reading time: 279866 secs.
Reading: 5730000000
Reading time: 280070 secs.
Reading: 5740000000
Reading time: 280275 secs.
Reading: 5750000000
Reading time: 280480 secs.
Reading: 5770000000
Reading time: 280887 secs.
Reading: 5780000000
Reading time: 281093 secs.
Reading: 5800000000
Reading time: 281506 secs.
Reading: 5810000000
Reading time: 281714 secs.
Reading: 5820000000
Reading time: 281922 secs.
Reading: 5830000000
Reading time: 282128 secs.
Reading: 5840000000
Reading time: 282334 secs.
Reading: 5850000000
Reading time: 282540 secs.
Reading: 5860000000
Reading time: 282744 secs.
27/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq
Reading: 5900000000
Reading time: 283566 secs.
Reading: 5920000000
Reading time: 283974 secs.
Reading: 5930000000
Reading time: 284177 secs.
Reading: 5990000000
Reading time: 285389 secs.
Reading: 6000000000
Reading time: 285590 secs.
Reading: 6020000000
Reading time: 286001 secs.
Reading: 6040000000
Reading time: 286410 secs.
Reading: 6050000000
Reading time: 286616 secs.
Reading: 6100000000
Reading time: 287652 secs.
Reading: 6130000000
Reading time: 288277 secs.
Reading: 6140000000
Reading time: 288484 secs.
Reading: 6150000000
Reading time: 288694 secs.
Reading: 6160000000
Reading time: 288902 secs.
Reading: 6170000000
Reading time: 289111 secs.
28/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq
Reading: 6180000000
Reading time: 289323 secs.
Reading: 6190000000
Reading time: 289538 secs.
Reading: 6200000000
Reading time: 289753 secs.
Reading: 6220000000
Reading time: 290183 secs.
Reading: 6230000000
Reading time: 290399 secs.
Reading: 6240000000
Reading time: 290613 secs.
Reading: 6260000000
Reading time: 291044 secs.
Reading: 6280000000
Reading time: 291475 secs.
Reading: 6290000000
Reading time: 291691 secs.
Reading: 6300000000
Reading time: 291908 secs.
Reading: 6310000000
Reading time: 292124 secs.
Reading: 6320000000
Reading time: 292339 secs.
Reading: 6330000000
Reading time: 292556 secs.
Reading: 6340000000
Reading time: 292771 secs.
Reading: 6350000000
Reading time: 292985 secs.
Reading: 6360000000
Reading time: 293203 secs.
Reading: 6370000000
Reading time: 293418 secs.
Reading: 6400000000
Reading time: 294063 secs.
Reading: 6420000000
Reading time: 294494 secs.
Reading: 6430000000
Reading time: 294710 secs.
Reading: 6440000000
Reading time: 294926 secs.
Reading: 6450000000
Reading time: 295142 secs.
29/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L001_R1_001_val_1_val_1.fastq
30/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L001_R2_001_val_2_val_2.fastq
31/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L002_R1_001_val_1_val_1.fastq
32/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR019_S7_L002_R2_001_val_2_val_2.fastq
33/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L001_R1_001_val_1_val_1.fastq
34/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L001_R2_001_val_2_val_2.fastq
35/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L002_R1_001_val_1_val_1.fastq
Reading: 6470000000
Reading time: 295621 secs.
36/36 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimmed_again/NR021_S8_L002_R2_001_val_2_val_2.fastq
Total nodes in round 2: 906872849
Total nodes: 906872849
Total edges in round 2: 1214692824
Reading time: 297129 secs.
Screening off weak nodes and edges...
Graph simplification...
Min searching depth: 7
Max searching depth: 20
Current depth: 7
10000000
20000000
30000000
40000000
50000000
60000000
70000000
80000000
90000000
100000000
110000000
120000000
130000000
140000000
150000000
160000000
170000000
180000000
190000000
200000000
210000000
220000000
230000000
240000000
250000000
260000000
270000000
280000000
290000000
300000000
310000000
320000000
330000000
Current depth: 11
10000000
20000000
30000000
40000000
50000000
60000000
70000000
80000000
90000000
100000000
110000000
120000000
130000000
140000000
150000000
160000000
170000000
180000000
190000000
200000000
210000000
220000000
230000000
240000000
250000000
260000000
270000000
280000000
290000000
300000000
310000000
320000000
330000000
Current depth: 15
10000000
20000000
30000000
40000000
50000000
60000000
70000000
80000000
90000000
100000000
110000000
120000000
130000000
140000000
150000000
160000000
170000000
180000000
190000000
200000000
210000000
220000000
230000000
240000000
250000000
260000000
270000000
280000000
290000000
300000000
310000000
320000000
330000000
Current depth: 19
10000000
20000000
30000000
40000000
50000000
60000000
70000000
80000000
90000000
100000000
110000000
120000000
130000000
140000000
150000000
160000000
170000000
180000000
190000000
200000000
210000000
220000000
230000000
240000000
250000000
260000000
270000000
280000000
290000000
300000000
310000000
320000000
330000000
Build contigs...
Contigs remapping.
Marking kmers...
Kmer marking time: 1801 secs.