[2018-03-28 07:50:34,950] multiqc [DEBUG ] No MultiQC config found: /usr/local/lib/python2.7/dist-packages/multiqc-1.6.dev0-py2.7.egg/multiqc_config.yaml [2018-03-28 07:50:34,951] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2018-03-28 07:50:34,951] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-03-28 07:50:34,951] multiqc [DEBUG ] Command used: /usr/local/bin/multiqc /mnt/owl/Athaliana/20180327_bgi_fastqc/ [2018-03-28 07:50:35,587] multiqc [DEBUG ] Latest MultiQC version is v1.5 [2018-03-28 07:50:35,587] multiqc [INFO ] This is MultiQC v1.6.dev0 [2018-03-28 07:50:35,587] multiqc [DEBUG ] Command : /usr/local/bin/multiqc /mnt/owl/Athaliana/20180327_bgi_fastqc/ [2018-03-28 07:50:35,588] multiqc [DEBUG ] Working dir : /home/sam/software/MultiQC [2018-03-28 07:50:35,588] multiqc [INFO ] Template : default [2018-03-28 07:50:35,588] multiqc [INFO ] Searching '/mnt/owl/Athaliana/20180327_bgi_fastqc/' [2018-03-28 07:50:35,588] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, dedup, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastqc, clusterflow, bcl2fastq, interop [2018-03-28 07:50:35,588] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp6oEI8l [2018-03-28 07:50:35,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2_fastqc.html [2018-03-28 07:50:35,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2_fastqc.html [2018-03-28 07:50:36,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1_fastqc.html [2018-03-28 07:50:36,266] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1_fastqc.html [2018-03-28 07:50:36,266] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2_fastqc.html [2018-03-28 07:50:36,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1_fastqc.html [2018-03-28 07:50:36,268] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1_fastqc.html [2018-03-28 07:50:36,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2_fastqc.html [2018-03-28 07:50:36,270] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1_fastqc.html [2018-03-28 07:50:36,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1_fastqc.html [2018-03-28 07:50:36,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2_fastqc.html [2018-03-28 07:50:36,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2_fastqc.html [2018-03-28 07:50:36,816] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2_fastqc.html [2018-03-28 07:50:36,834] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_1_fastqc.html [2018-03-28 07:50:36,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1_fastqc.html [2018-03-28 07:50:36,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_2_fastqc.html [2018-03-28 07:50:36,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1_fastqc.html [2018-03-28 07:50:41,337] multiqc [DEBUG ] No samples found: custom_content [2018-03-28 07:50:41,342] multiqc [DEBUG ] No samples found: conpair [2018-03-28 07:50:41,346] multiqc [DEBUG ] No samples found: peddy [2018-03-28 07:50:41,350] multiqc [DEBUG ] No samples found: methylQA [2018-03-28 07:50:41,355] multiqc [DEBUG ] No samples found: qualimap [2018-03-28 07:50:41,359] multiqc [DEBUG ] No samples found: preseq [2018-03-28 07:50:41,363] multiqc [DEBUG ] No samples found: quast [2018-03-28 07:50:41,367] multiqc [DEBUG ] No samples found: qorts [2018-03-28 07:50:41,371] multiqc [DEBUG ] No samples found: rna_seqc [2018-03-28 07:50:41,376] multiqc [DEBUG ] No samples found: rsem [2018-03-28 07:50:41,381] multiqc [DEBUG ] No samples found: rseqc [2018-03-28 07:50:41,385] multiqc [DEBUG ] No samples found: busco [2018-03-28 07:50:41,389] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-03-28 07:50:41,394] multiqc [DEBUG ] No samples found: disambiguate [2018-03-28 07:50:41,398] multiqc [DEBUG ] No samples found: supernova [2018-03-28 07:50:41,403] multiqc [DEBUG ] No samples found: deeptools [2018-03-28 07:50:41,407] multiqc [DEBUG ] No samples found: sargasso [2018-03-28 07:50:41,411] multiqc [DEBUG ] No samples found: verifybamid [2018-03-28 07:50:41,416] multiqc [DEBUG ] No samples found: homer [2018-03-28 07:50:41,420] multiqc [DEBUG ] No samples found: macs2 [2018-03-28 07:50:41,424] multiqc [DEBUG ] No samples found: theta2 [2018-03-28 07:50:41,428] multiqc [DEBUG ] No samples found: snpeff [2018-03-28 07:50:41,433] multiqc [DEBUG ] No samples found: gatk [2018-03-28 07:50:41,437] multiqc [DEBUG ] No samples found: htseq [2018-03-28 07:50:41,441] multiqc [DEBUG ] No samples found: bcftools [2018-03-28 07:50:41,445] multiqc [DEBUG ] No samples found: featureCounts [2018-03-28 07:50:41,450] multiqc [DEBUG ] No samples found: dedup [2018-03-28 07:50:41,455] multiqc [DEBUG ] No samples found: picard [2018-03-28 07:50:41,459] multiqc [DEBUG ] No samples found: prokka [2018-03-28 07:50:41,463] multiqc [DEBUG ] No samples found: samblaster [2018-03-28 07:50:41,468] multiqc [DEBUG ] No samples found: samtools [2018-03-28 07:50:41,472] multiqc [DEBUG ] No samples found: bamtools [2018-03-28 07:50:41,476] multiqc [DEBUG ] No samples found: jellyfish [2018-03-28 07:50:41,481] multiqc [DEBUG ] No samples found: vcftools [2018-03-28 07:50:41,486] multiqc [DEBUG ] No samples found: bbmap [2018-03-28 07:50:41,491] multiqc [DEBUG ] No samples found: bismark [2018-03-28 07:50:41,495] multiqc [DEBUG ] No samples found: hicexplorer [2018-03-28 07:50:41,499] multiqc [DEBUG ] No samples found: hicup [2018-03-28 07:50:41,503] multiqc [DEBUG ] No samples found: salmon [2018-03-28 07:50:41,507] multiqc [DEBUG ] No samples found: kallisto [2018-03-28 07:50:41,512] multiqc [DEBUG ] No samples found: slamdunk [2018-03-28 07:50:41,516] multiqc [DEBUG ] No samples found: star [2018-03-28 07:50:41,520] multiqc [DEBUG ] No samples found: hisat2 [2018-03-28 07:50:41,524] multiqc [DEBUG ] No samples found: tophat [2018-03-28 07:50:41,528] multiqc [DEBUG ] No samples found: bowtie2 [2018-03-28 07:50:41,533] multiqc [DEBUG ] No samples found: bowtie1 [2018-03-28 07:50:41,537] multiqc [DEBUG ] No samples found: leehom [2018-03-28 07:50:41,541] multiqc [DEBUG ] No samples found: adapterRemoval [2018-03-28 07:50:41,546] multiqc [DEBUG ] No samples found: clipandmerge [2018-03-28 07:50:41,550] multiqc [DEBUG ] No samples found: cutadapt [2018-03-28 07:50:41,554] multiqc [DEBUG ] No samples found: flexbar [2018-03-28 07:50:41,558] multiqc [DEBUG ] No samples found: trimmomatic [2018-03-28 07:50:41,562] multiqc [DEBUG ] No samples found: skewer [2018-03-28 07:50:41,566] multiqc [DEBUG ] No samples found: sortmerna [2018-03-28 07:50:41,570] multiqc [DEBUG ] No samples found: biobloomtools [2018-03-28 07:50:41,575] multiqc [DEBUG ] No samples found: fastq_screen [2018-03-28 07:50:41,579] multiqc [DEBUG ] No samples found: afterqc [2018-03-28 07:50:44,930] multiqc.modules.fastqc.fastqc [INFO ] Found 17 reports [2018-03-28 07:50:46,037] multiqc [DEBUG ] No samples found: clusterflow [2018-03-28 07:50:46,041] multiqc [DEBUG ] No samples found: bcl2fastq [2018-03-28 07:50:46,045] multiqc [DEBUG ] No samples found: interop [2018-03-28 07:50:46,075] multiqc [INFO ] Compressing plot data [2018-03-28 07:50:47,304] multiqc [INFO ] Report : multiqc_report.html [2018-03-28 07:50:47,304] multiqc [INFO ] Data : multiqc_data [2018-03-28 07:50:47,304] multiqc [DEBUG ] Moving data file from '/tmp/tmp6oEI8l/multiqc_data/multiqc_general_stats.txt' to '/home/sam/software/MultiQC/multiqc_data' [2018-03-28 07:50:47,304] multiqc [DEBUG ] Moving data file from '/tmp/tmp6oEI8l/multiqc_data/multiqc_fastqc.txt' to '/home/sam/software/MultiQC/multiqc_data' [2018-03-28 07:50:47,305] multiqc [DEBUG ] Moving data file from '/tmp/tmp6oEI8l/multiqc_data/multiqc_sources.txt' to '/home/sam/software/MultiQC/multiqc_data' [2018-03-28 07:50:47,305] multiqc [DEBUG ] Moving data file from '/tmp/tmp6oEI8l/multiqc_data/multiqc_data.json' to '/home/sam/software/MultiQC/multiqc_data' [2018-03-28 07:50:47,456] multiqc [INFO ] MultiQC complete