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        Note that additional data was saved in multiqc_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.6.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2018-03-28, 10:18 based on data in: /mnt/owl/Athaliana/20180328_fastqc

        General Statistics

        Showing 64/64 rows and 4/5 columns.
        Sample Name% Dups% GCLengthM Seqs
        Geoduck-NMP-gDNA-1_S1_L001_R1_001
        27.9%
        34%
        122 bp
        368.5
        Geoduck-NMP-gDNA-1_S1_L001_R2_001
        20.9%
        36%
        126 bp
        368.5
        Geoduck-NMP-gDNA-2_S5_L002_R1_001
        28.2%
        34%
        122 bp
        377.1
        Geoduck-NMP-gDNA-2_S5_L002_R2_001
        20.9%
        35%
        125 bp
        377.1
        Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001
        4.3%
        33%
        138 bp
        0.0
        Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001
        17.8%
        39%
        114 bp
        0.0
        Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001
        4.6%
        33%
        138 bp
        0.0
        Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001
        17.1%
        39%
        116 bp
        0.0
        Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001
        22.5%
        35%
        122 bp
        355.5
        Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001
        18.0%
        36%
        126 bp
        355.5
        Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001
        22.2%
        35%
        122 bp
        360.3
        Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001
        18.1%
        36%
        126 bp
        360.3
        Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001
        8.9%
        34%
        126 bp
        0.3
        Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001
        12.4%
        36%
        119 bp
        0.3
        Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001
        9.4%
        35%
        125 bp
        0.3
        Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001
        11.9%
        36%
        119 bp
        0.3
        Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001
        18.5%
        35%
        119 bp
        0.5
        Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001
        17.7%
        36%
        119 bp
        0.5
        Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001
        17.5%
        35%
        119 bp
        0.5
        Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001
        16.6%
        36%
        120 bp
        0.5
        Geoduck-NMP-gDNA-3_S9_L003_R1_001
        6.3%
        35%
        133 bp
        0.1
        Geoduck-NMP-gDNA-3_S9_L003_R2_001
        10.7%
        35%
        124 bp
        0.1
        Geoduck-NMP-gDNA-4_S13_L004_R1_001
        6.7%
        35%
        131 bp
        0.1
        Geoduck-NMP-gDNA-4_S13_L004_R2_001
        10.1%
        35%
        125 bp
        0.1
        Geoduck-NMP-gDNA-5_S17_L005_R1_001
        5.0%
        35%
        136 bp
        0.0
        Geoduck-NMP-gDNA-5_S17_L005_R2_001
        18.4%
        39%
        109 bp
        0.0
        Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001
        6.3%
        34%
        133 bp
        0.1
        Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001
        13.7%
        37%
        120 bp
        0.1
        Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001
        6.5%
        34%
        133 bp
        0.1
        Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001
        13.3%
        37%
        120 bp
        0.1
        Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001
        6.7%
        35%
        134 bp
        1.0
        Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001
        13.7%
        38%
        118 bp
        1.0
        Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001
        6.8%
        35%
        133 bp
        0.8
        Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001
        12.9%
        38%
        120 bp
        0.8
        Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001
        26.2%
        36%
        111 bp
        334.7
        Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001
        23.1%
        37%
        113 bp
        334.7
        Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001
        26.1%
        36%
        111 bp
        337.5
        Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001
        23.5%
        37%
        113 bp
        337.5
        Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001
        7.8%
        35%
        130 bp
        0.3
        Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001
        13.8%
        36%
        117 bp
        0.3
        Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001
        8.1%
        35%
        129 bp
        0.3
        Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001
        13.8%
        37%
        117 bp
        0.3
        Geoduck-NMP-gDNA-6_S21_L006_R1_001
        4.8%
        35%
        136 bp
        0.0
        Geoduck-NMP-gDNA-6_S21_L006_R2_001
        18.3%
        39%
        108 bp
        0.0
        Geoduck-NMP-gDNA-7_S25_L007_R1_001
        7.2%
        37%
        132 bp
        0.0
        Geoduck-NMP-gDNA-7_S25_L007_R2_001
        17.4%
        41%
        112 bp
        0.0
        Geoduck-NMP-gDNA-8_S29_L008_R1_001
        7.1%
        36%
        132 bp
        0.0
        Geoduck-NMP-gDNA-8_S29_L008_R2_001
        17.6%
        41%
        112 bp
        0.0
        Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001
        4.3%
        34%
        139 bp
        0.0
        Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001
        18.5%
        41%
        113 bp
        0.0
        Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001
        4.7%
        34%
        138 bp
        0.0
        Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001
        17.8%
        40%
        115 bp
        0.0
        Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001
        12.5%
        35%
        124 bp
        0.3
        Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001
        12.6%
        36%
        124 bp
        0.3
        Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001
        12.3%
        35%
        124 bp
        0.3
        Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001
        12.5%
        36%
        124 bp
        0.3
        Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001
        7.0%
        35%
        131 bp
        0.1
        Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001
        14.3%
        37%
        115 bp
        0.1
        Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001
        7.0%
        35%
        131 bp
        0.1
        Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001
        13.7%
        37%
        116 bp
        0.1
        Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001
        27.2%
        35%
        117 bp
        372.4
        Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001
        23.2%
        36%
        119 bp
        372.4
        Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001
        26.9%
        35%
        117 bp
        377.7
        Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001
        23.8%
        36%
        119 bp
        377.7

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        loading..

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        loading..

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        loading..

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        loading..

        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        loading..

        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        loading..

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        loading..

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        loading..

        MultiQC v1.6.dev0 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.