FastQCFastQC Report
Thu 29 Mar 2018
Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences290381620
Sequences flagged as poor quality0
Sequence length20-151
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAGGG276600.07.1034594145
GGCGCGG225650.06.7119274145
GCGCGGG209900.06.6305156145
CGAGAGG407150.06.534912145
GTCCCTT1761100.06.4151363145
CGATGGG377250.06.2933164145
CGATCGG280350.06.278396145
CGCCGGG319000.06.0309815145
GAGACCG511200.06.0055285145
GAGGAGG842800.05.925379145
CGGGGGG398150.05.860153145
GGGGGGG2781450.05.857235145
CTCGAGG332650.05.7835064145
GGTAGGG838500.05.7604947145
GCGGGGG540250.05.7583714145
GGCTCTT870250.05.7384768145
CGAAGGG307000.05.7333827145
GTAGCGG483750.05.6693683145
CCGGGGG325300.05.662514145
GAGAGGG915350.05.6346145145
Produced by FastQC (version 0.11.5)