FastQCFastQC Report
Mon 2 Apr 2018
Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences288008202
Sequences flagged as poor quality0
Sequence length20-151
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG3391100.07.0765247145
CGATGGG394100.06.8005586145
CGGGGGG456600.06.7727184145
GCGCGGG219200.06.5836263145
CTCGTGG437150.06.508131145
CCGCGGG202951.8189894E-126.5012755145
GATCCGG340950.06.4094806145
CGACAGG579500.06.332486145
GAGAGGG1037300.06.2804446145
GCGGGGG579450.06.2618747145
AGCCCGG384450.06.220507145
CGAGGGG385850.06.0910754145
CGAAGGG319300.06.069272145
CGTAGGG313350.06.0529323145
GTCCCTT1642450.05.974787145
GGCTCTT849100.05.972882145
GAGGAGG939100.05.9712424145
GTAGGGG1115150.05.9529223145
GCTAGGG474800.05.905217145
GTGAGGG996450.05.8758473145