FastQCFastQC Report
Mon 2 Apr 2018
Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197552
Sequences flagged as poor quality0
Sequence length20-151
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTCTT600.0056849336155.79066145
CGTGGCG550.001352308439.3857651
CGATGCA650.003070240433.3264161
GTGTGCC700.004446314630.8989522
CGTACCA904.143425E-430.0863461
CGAATAC750.00618383828.8828951
CGTGACA1400.005426084619.3412251
CGTACAT1758.9772575E-418.5675741
CGTATTA2050.002589668115.85036851
CGTATTT3000.002192254412.6362671
TATGCAT3550.00780927210.65961553
GTATTAA3600.00864672810.5142262