FastQCFastQC Report
Mon 2 Apr 2018
Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42470
Sequences flagged as poor quality0
Sequence length20-151
%GC32

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCCGG50.009120752942.22833145
GGTGCGT50.009120752942.22833145
TTCGGTT50.009120752942.22833145
CGATGGG50.009120752942.22833145
CCACGTG50.009120752942.22833145
CGTTGAA250.003679690261.551481
GATGCTA200.00772980627.58911765-69
ATATTTT4550.0066975069.0185321