FastQCFastQC Report
Mon 2 Apr 2018
Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences768362
Sequences flagged as poor quality0
Sequence length20-151
%GC36

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGTGGG2109.3038925E-6107.66974145
TGTCACG3400.00848175949.876423145
CTGGTAT5650.001245077740.01884145
AGTTGTG6150.001888632436.765274145
CGTGCGA650.003377183332.696481
CGAGAGT1503.6268725E-421.252711
CGTGAAT2604.6717927E-516.348241
CGTGTCA3051.8218052E-413.9362031
CGTCTGT5159.60372E-611.3485351
CGTTCAA3500.00802794610.6263551
CGAACAT3600.0098917810.3311781
CGTGATT3600.0098917810.3311781
CGTGTAA4450.0043132139.551781
CGTTATA5904.6995422E-49.0053861
TGTATGC8855.722868E-79.0053851
CGTTAAA6802.0289602E-48.5948461
GTATGCA8502.7079895E-47.49509762
CATCTTC4950.0095895335.4625916125-129