FastQCFastQC Report
Mon 2 Apr 2018
Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences651379
Sequences flagged as poor quality0
Sequence length20-151
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGT2757.732076E-444.11551145
CGCGCGC400.004336457231.070356140-144
GGCAATT4350.007329489627.889114145
GGTAGTT4500.00864787826.959476145
ATCCTTA4600.001114926711.2401276
TACTTGT12350.00201371686.28425071