Command: 
Programfile g GAP_VALUE k KMER_SIZE LD LOAD_SKG GS GENOME_SIZE TrimN TRIM_READS_WITH_N f INPUT_FILE1 f INPUT_FILE2 i1 INWARD_PAIR_END1 i2 INWARD_PAIR_END2 o1 OUTWARD_PAIR_END1 o2 OUTWARD_PAIR_END2

Parameters:
k: kmer size, support 15~127.
g: number of skipped intermediate k-mers, support 1-25.
f: single end reads. Multiple inputs shall be independently imported with this parameter.
i1 & i2 (or p1 & p2): inward paired-end reads.
o1 & o2 (or l1 & l2): outward paired-end reads.
GS: genome size estimation in bp (used for memory pre-allocation), suggest a large value if possible.(e.g. ~ 2x genome size)
LD: load a saved k-mer graph. 
BC: 1: build contigs.0: don't build.
KmerTable: 1 if you want to output the kmer table.
NodeCovTh: coverage threshold for spurious k-mers, support 0-16. (default 1)
EdgeCovTh: coverage threshold for spurious links, support 0-16. (default 0)
PathCovTh: coverage threshold for spurious paths in the breadth-first search, support 0-100.
TrimLen: trim long sequences to this length.
TrimN: throw away reads with more than this number of Ns.
TrimQual: trim off tails with quality scores lower than this.
QualBase: lowest quality score value (in ASCII value) in the current fastq scoring system, default: '!'.

For error correction:
Denoise: use 1 to call the error correction module. (default 0)
H: hybrid mode. 0 (Default): reads will be trimmed at the ends to ensure denoising accuracy (*MUST* set 0 for the last round). 1: reads will not be trimmed at the ends; 
CovTh: coverage threshold for an error. A k-mer with coverage < this value will be checked. Setting 0 will allow the program to choose a value based on the coverage histogram.
CorrTh: coverage threshold for a correct k-mer candidate. A k-mer with coverage >= this value will be considered a candidate for correction. Setting 0 will allow the program to choose a value based on the coverage histogram.

For scaffolding:
ExpCov: expected average k-mer coverage in a unique contig. Used for scaffolding.
Scaffold: 1: scaffolding with paired reads. 0: single end assembly.
LinkCovTh: coverage threshold for spurious paired-end links, support 0-100. (default 5)
Iter_Scaffold: 1: iterative scaffolding using the already built scaffolds (/super contigs). 0: one round scaffolding.
For mate pair scaffolding:
InsertSize: estimated insert size of the current pair.
i1_mp & i2_mp: inward mate paired reads (large insert sizes >10k, for shorter libraries omit "_mp").
o1_mp & o2_mp : outward paired-end reads (large insert sizes >10k, for shorter libraries omit "_mp").

Scanning the dataset.
1/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R1_001_val_1_val_1.fastq
Reading: 50000000
Reading: 100000000
Reading: 150000000
2/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R2_001_val_2_val_2.fastq
Reading: 200000000
Reading: 250000000
Reading: 300000000
3/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R1_001_val_1_val_1.fastq
Reading: 350000000
Reading: 400000000
Reading: 450000000
Reading: 500000000
4/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R2_001_val_2_val_2.fastq
Reading: 550000000
Reading: 600000000
Reading: 650000000
Reading: 700000000
Reading: 750000000
5/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R1_001_val_1_val_1.fastq
6/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R2_001_val_2_val_2.fastq
7/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R1_001_val_1_val_1.fastq
8/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R2_001_val_2_val_2.fastq
9/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R1_001_val_1_val_1.fastq
10/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R2_001_val_2_val_2.fastq
11/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R1_001_val_1_val_1.fastq
12/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R2_001_val_2_val_2.fastq
13/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R1_001_val_1_val_1.fastq
14/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R2_001_val_2_val_2.fastq
15/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R1_001_val_1_val_1.fastq
16/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R2_001_val_2_val_2.fastq
17/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq
Reading: 800000000
Reading: 850000000
Reading: 900000000
Reading: 950000000
Reading: 1000000000
Reading: 1050000000
18/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq
Reading: 1100000000
Reading: 1150000000
Reading: 1200000000
Reading: 1250000000
Reading: 1300000000
Reading: 1350000000
19/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq
Reading: 1400000000
Reading: 1450000000
Reading: 1500000000
Reading: 1550000000
Reading: 1600000000
Reading: 1650000000
Reading: 1700000000
Reading: 1750000000
20/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq
Reading: 1800000000
Reading: 1850000000
Reading: 1900000000
Reading: 1950000000
Reading: 2000000000
Reading: 2050000000
Reading: 2100000000
21/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq
Reading: 2150000000
Reading: 2200000000
Reading: 2250000000
Reading: 2300000000
Reading: 2350000000
Reading: 2400000000
Reading: 2450000000
Reading: 2500000000
Reading: 2550000000
Reading: 2600000000
Reading: 2650000000
Reading: 2700000000
Reading: 2750000000
Reading: 2800000000
Reading: 2850000000
22/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq
Reading: 2900000000
Reading: 2950000000
Reading: 3000000000
Reading: 3050000000
Reading: 3100000000
Reading: 3150000000
Reading: 3200000000
Reading: 3250000000
Reading: 3300000000
Reading: 3350000000
Reading: 3400000000
Reading: 3450000000
Reading: 3500000000
Reading: 3550000000
Reading: 3600000000
23/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq
Reading: 3650000000
Reading: 3700000000
Reading: 3750000000
Reading: 3800000000
Reading: 3850000000
Reading: 3900000000
Reading: 3950000000
Reading: 4000000000
Reading: 4050000000
Reading: 4100000000
Reading: 4150000000
Reading: 4200000000
Reading: 4250000000
Reading: 4300000000
Reading: 4350000000
Reading: 4400000000
Reading: 4450000000
Reading: 4500000000
24/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq
Reading: 4550000000
Reading: 4600000000
Reading: 4650000000
Reading: 4700000000
Reading: 4750000000
Reading: 4800000000
Reading: 4850000000
Reading: 4900000000
Reading: 4950000000
Reading: 5000000000
Reading: 5050000000
Reading: 5100000000
Reading: 5150000000
Reading: 5200000000
Reading: 5250000000
Reading: 5300000000
Reading: 5350000000
25/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq
Reading: 5400000000
Reading: 5450000000
Reading: 5500000000
Reading: 5550000000
Reading: 5600000000
26/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq
Reading: 5650000000
Reading: 5700000000
Reading: 5750000000
Reading: 5800000000
Reading: 5850000000
27/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq
Reading: 5900000000
Reading: 5950000000
Reading: 6000000000
Reading: 6050000000
Reading: 6100000000
Reading: 6150000000
28/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq
Reading: 6200000000
Reading: 6250000000
Reading: 6300000000
Reading: 6350000000
Reading: 6400000000
Reading: 6450000000
29/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R1_001_val_1_val_1.fastq
30/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R2_001_val_2_val_2.fastq
31/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R1_001_val_1_val_1.fastq
32/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R2_001_val_2_val_2.fastq
33/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R1_001_val_1_val_1.fastq
34/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R2_001_val_2_val_2.fastq
35/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R1_001_val_1_val_1.fastq
36/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R2_001_val_2_val_2.fastq
37/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fastq
Reading: 6500000000
Reading: 6550000000
38/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2.fastq
Reading: 6600000000
Reading: 6650000000
39/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1.fastq
Reading: 6700000000
40/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fastq
Reading: 6750000000
Reading: 6800000000
41/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fastq
Reading: 6850000000
42/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2.fastq
Reading: 6900000000
Reading: 6950000000
43/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_1.fastq
Reading: 7000000000
44/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_2.fastq
Reading: 7050000000
45/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1.fastq
Reading: 7100000000
Reading: 7150000000
46/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2.fastq
Reading: 7200000000
47/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1.fastq
Reading: 7250000000
48/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2.fastq
Reading: 7300000000
Reading: 7350000000
49/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1.fastq
Reading: 7400000000
50/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2.fastq
Reading: 7450000000
51/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1.fastq
Reading: 7500000000
52/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_2.fastq
Reading: 7550000000
53/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1.fastq
Reading: 7600000000
54/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2.fastq
Reading: 7650000000
55/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R1_001_val_1.fastq
Reading: 7700000000
Reading: 7750000000
Reading: 7800000000
Reading: 7850000000
Reading: 7900000000
Reading: 7950000000
56/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fastq
Reading: 8000000000
Reading: 8050000000
Reading: 8100000000
Reading: 8150000000
Reading: 8200000000
Reading: 8250000000
57/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R1_001_val_1.fastq
Reading: 8300000000
Reading: 8350000000
Reading: 8400000000
Reading: 8450000000
Reading: 8500000000
Reading: 8550000000
58/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R2_001_val_2.fastq
Reading: 8600000000
Reading: 8650000000
Reading: 8700000000
Reading: 8750000000
Reading: 8800000000
59/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001_val_1.fastq
60/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001_val_2.fastq
61/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001_val_1.fastq
62/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001_val_2.fastq
63/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001_val_1.fastq
Reading: 8850000000
Reading: 8900000000
Reading: 8950000000
Reading: 9000000000
Reading: 9050000000
Reading: 9100000000
64/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001_val_2.fastq
Reading: 9150000000
Reading: 9200000000
Reading: 9250000000
Reading: 9300000000
Reading: 9350000000
Reading: 9400000000
65/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001_val_1.fastq
Reading: 9450000000
Reading: 9500000000
Reading: 9550000000
Reading: 9600000000
Reading: 9650000000
Reading: 9700000000
66/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fastq
Reading: 9750000000
Reading: 9800000000
Reading: 9850000000
Reading: 9900000000
Reading: 9950000000
67/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001_val_1.fastq
68/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001_val_2.fastq
69/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001_val_1.fastq
70/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fastq
71/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001_val_1.fastq
72/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001_val_2.fastq
73/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001_val_1.fastq
74/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001_val_2.fastq
75/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R1_001_val_1.fastq
76/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R2_001_val_2.fastq
77/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R1_001_val_1.fastq
78/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fastq
79/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R1_001_val_1.fastq
80/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R2_001_val_2.fastq
81/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001_val_1.fastq
82/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001_val_2.fastq
83/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001_val_1.fastq
84/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001_val_2.fastq
85/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001_val_1.fastq
86/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fastq
87/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fastq
88/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001_val_2.fastq
89/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001_val_1.fastq
Reading: 10000000000
Reading: 10050000000
Reading: 10100000000
Reading: 10150000000
Reading: 10200000000
90/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001_val_2.fastq
Reading: 10250000000
Reading: 10300000000
Reading: 10350000000
Reading: 10400000000
Reading: 10450000000
91/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001_val_1.fastq
Reading: 10500000000
Reading: 10550000000
Reading: 10600000000
Reading: 10650000000
Reading: 10700000000
92/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001_val_2.fastq
Reading: 10750000000
Reading: 10800000000
Reading: 10850000000
Reading: 10900000000
93/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001_val_1.fastq
94/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001_val_2.fastq
95/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001_val_1.fastq
96/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001_val_2.fastq
97/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R1_001_val_1.fastq
98/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R2_001_val_2.fastq
99/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R1_001_val_1.fastq
100/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R2_001_val_2.fastq
101/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R1_001_val_1.fastq
102/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R2_001_val_2.fastq
103/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001_val_1.fastq
104/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001_val_2.fastq
105/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001_val_1.fastq
106/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001_val_2.fastq
107/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001_val_1.fastq
108/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001_val_2.fastq
109/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001_val_1.fastq
110/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001_val_2.fastq
111/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001_val_1.fastq
112/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001_val_2.fastq
113/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001_val_1.fastq
114/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001_val_2.fastq
115/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001_val_1.fastq
Reading: 10950000000
Reading: 11000000000
Reading: 11050000000
Reading: 11100000000
Reading: 11150000000
Reading: 11200000000
116/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001_val_2.fastq
Reading: 11250000000
Reading: 11300000000
Reading: 11350000000
Reading: 11400000000
Reading: 11450000000
Reading: 11500000000
117/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001_val_1.fastq
Reading: 11550000000
Reading: 11600000000
Reading: 11650000000
Reading: 11700000000
Reading: 11750000000
118/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001_val_2.fastq
Reading: 11800000000
Reading: 11850000000
Reading: 11900000000
Reading: 11950000000
Reading: 12000000000
Reading: 12050000000
Scan finished.
Building the sparse k-mer graph, round: 1
1/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R1_001_val_1_val_1.fastq
Reading: 10000000
Memory used: 78 MB.
Reading time: 20430 secs.
Reading: 20000000
Memory used: 224 MB.
Reading time: 20597 secs.
Reading: 30000000
Memory used: 417 MB.
Reading time: 20762 secs.
Reading: 40000000
Memory used: 638 MB.
Reading time: 20925 secs.
Reading: 50000000
Memory used: 862 MB.
Reading time: 21088 secs.
Reading: 60000000
Memory used: 1116 MB.
Reading time: 21248 secs.
Reading: 70000000
Memory used: 1368 MB.
Reading time: 21407 secs.
Reading: 90000000
Memory used: 1881 MB.
Reading time: 21727 secs.
Reading: 100000000
Memory used: 2144 MB.
Reading time: 21889 secs.
Reading: 110000000
Memory used: 2390 MB.
Reading time: 22052 secs.
Reading: 130000000
Memory used: 2888 MB.
Reading time: 22376 secs.
Reading: 140000000
Memory used: 3122 MB.
Reading time: 22539 secs.
Reading: 150000000
Memory used: 3339 MB.
Reading time: 22703 secs.
2/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R2_001_val_2_val_2.fastq
Reading: 170000000
Memory used: 3757 MB.
Reading time: 23036 secs.
Reading: 190000000
Memory used: 4139 MB.
Reading time: 23394 secs.
Reading: 220000000
Memory used: 4672 MB.
Reading time: 23931 secs.
Reading: 230000000
Memory used: 4834 MB.
Reading time: 24111 secs.
Reading: 250000000
Memory used: 5149 MB.
Reading time: 24472 secs.
Reading: 270000000
Memory used: 5407 MB.
Reading time: 24845 secs.
Reading: 280000000
Memory used: 5542 MB.
Reading time: 25029 secs.
Reading: 290000000
Memory used: 5672 MB.
Reading time: 25214 secs.
Reading: 320000000
Memory used: 6029 MB.
Reading time: 25772 secs.
Reading: 330000000
Memory used: 6142 MB.
Reading time: 25958 secs.
3/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R1_001_val_1_val_1.fastq
Reading: 340000000
Memory used: 6269 MB.
Reading time: 26142 secs.
Reading: 350000000
Memory used: 6403 MB.
Reading time: 26321 secs.
Reading: 360000000
Memory used: 6528 MB.
Reading time: 26500 secs.
Reading: 390000000
Memory used: 6874 MB.
Reading time: 27048 secs.
Reading: 410000000
Memory used: 7084 MB.
Reading time: 27415 secs.
Reading: 420000000
Memory used: 7185 MB.
Reading time: 27601 secs.
Reading: 430000000
Memory used: 7280 MB.
Reading time: 27787 secs.
Reading: 460000000
Memory used: 7537 MB.
Reading time: 28352 secs.
Reading: 480000000
Memory used: 7693 MB.
Reading time: 28748 secs.
Reading: 490000000
Memory used: 7768 MB.
Reading time: 28936 secs.
Reading: 500000000
Memory used: 7843 MB.
Reading time: 29127 secs.
Reading: 510000000
Memory used: 7913 MB.
Reading time: 29318 secs.
4/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R2_001_val_2_val_2.fastq
Reading: 570000000
Memory used: 8282 MB.
Reading time: 30504 secs.
Reading: 580000000
Memory used: 8337 MB.
Reading time: 30709 secs.
Reading: 600000000
Memory used: 8441 MB.
Reading time: 31120 secs.
Reading: 640000000
Memory used: 8637 MB.
Reading time: 31945 secs.
Reading: 650000000
Memory used: 8683 MB.
Reading time: 32152 secs.
Reading: 660000000
Memory used: 8726 MB.
Reading time: 32360 secs.
Reading: 670000000
Memory used: 8767 MB.
Reading time: 32571 secs.
Reading: 680000000
Memory used: 8809 MB.
Reading time: 32780 secs.
Reading: 700000000
Memory used: 8894 MB.
Reading time: 33194 secs.
Reading: 710000000
Memory used: 8937 MB.
Reading time: 33402 secs.
Reading: 720000000
Memory used: 8978 MB.
Reading time: 33611 secs.
Reading: 730000000
Memory used: 9018 MB.
Reading time: 33818 secs.
Reading: 750000000
Memory used: 9098 MB.
Reading time: 34235 secs.
5/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R1_001_val_1_val_1.fastq
6/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R2_001_val_2_val_2.fastq
7/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R1_001_val_1_val_1.fastq
8/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R2_001_val_2_val_2.fastq
9/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R1_001_val_1_val_1.fastq
10/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R2_001_val_2_val_2.fastq
Reading: 760000000
Memory used: 9150 MB.
Reading time: 34458 secs.
11/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R1_001_val_1_val_1.fastq
12/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R2_001_val_2_val_2.fastq
13/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R1_001_val_1_val_1.fastq
14/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R2_001_val_2_val_2.fastq
15/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R1_001_val_1_val_1.fastq
16/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R2_001_val_2_val_2.fastq
17/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq
Reading: 770000000
Memory used: 9201 MB.
Reading time: 34689 secs.
Reading: 780000000
Memory used: 9236 MB.
Reading time: 34900 secs.
Reading: 800000000
Memory used: 9303 MB.
Reading time: 35318 secs.
Reading: 810000000
Memory used: 9334 MB.
Reading time: 35524 secs.
Reading: 820000000
Memory used: 9367 MB.
Reading time: 35732 secs.
Reading: 830000000
Memory used: 9398 MB.
Reading time: 35939 secs.
Reading: 840000000
Memory used: 9429 MB.
Reading time: 36145 secs.
Reading: 860000000
Memory used: 9488 MB.
Reading time: 36560 secs.
Reading: 890000000
Memory used: 9575 MB.
Reading time: 37169 secs.
Reading: 900000000
Memory used: 9604 MB.
Reading time: 37373 secs.
Reading: 910000000
Memory used: 9633 MB.
Reading time: 37575 secs.
Reading: 920000000
Memory used: 9661 MB.
Reading time: 37774 secs.
Reading: 930000000
Memory used: 9688 MB.
Reading time: 37980 secs.
Reading: 970000000
Memory used: 9800 MB.
Reading time: 38802 secs.
Reading: 980000000
Memory used: 9829 MB.
Reading time: 39007 secs.
Reading: 990000000
Memory used: 9856 MB.
Reading time: 39210 secs.
Reading: 1000000000
Memory used: 9883 MB.
Reading time: 39415 secs.
Reading: 1010000000
Memory used: 9911 MB.
Reading time: 39621 secs.
Reading: 1020000000
Memory used: 9938 MB.
Reading time: 39826 secs.
Reading: 1060000000
Memory used: 10044 MB.
Reading time: 40646 secs.
Reading: 1070000000
Memory used: 10070 MB.
Reading time: 40849 secs.
18/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq
Reading: 1080000000
Memory used: 10096 MB.
Reading time: 41056 secs.
Reading: 1100000000
Memory used: 10148 MB.
Reading time: 41493 secs.
Reading: 1110000000
Memory used: 10174 MB.
Reading time: 41710 secs.
Reading: 1130000000
Memory used: 10227 MB.
Reading time: 42140 secs.
Reading: 1140000000
Memory used: 10255 MB.
Reading time: 42353 secs.
Reading: 1160000000
Memory used: 10310 MB.
Reading time: 42779 secs.
Reading: 1190000000
Memory used: 10397 MB.
Reading time: 43405 secs.
Reading: 1210000000
Memory used: 10454 MB.
Reading time: 43821 secs.
Reading: 1230000000
Memory used: 10515 MB.
Reading time: 44236 secs.
Reading: 1250000000
Memory used: 10572 MB.
Reading time: 44662 secs.
Reading: 1260000000
Memory used: 10602 MB.
Reading time: 44876 secs.
Reading: 1270000000
Memory used: 10631 MB.
Reading time: 45089 secs.
Reading: 1290000000
Memory used: 10694 MB.
Reading time: 45513 secs.
Reading: 1300000000
Memory used: 10727 MB.
Reading time: 45723 secs.
Reading: 1310000000
Memory used: 10758 MB.
Reading time: 45934 secs.
Reading: 1320000000
Memory used: 10791 MB.
Reading time: 46148 secs.
Reading: 1330000000
Memory used: 10824 MB.
Reading time: 46359 secs.
Reading: 1340000000
Memory used: 10858 MB.
Reading time: 46571 secs.
Reading: 1350000000
Memory used: 10890 MB.
Reading time: 46785 secs.
Reading: 1360000000
Memory used: 10924 MB.
Reading time: 46996 secs.
Reading: 1370000000
Memory used: 10958 MB.
Reading time: 47207 secs.
19/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq
Reading: 1390000000
Memory used: 11024 MB.
Reading time: 47633 secs.
Reading: 1400000000
Memory used: 11057 MB.
Reading time: 47832 secs.
Reading: 1410000000
Memory used: 11089 MB.
Reading time: 48029 secs.
Reading: 1440000000
Memory used: 11180 MB.
Reading time: 48620 secs.
Reading: 1450000000
Memory used: 11209 MB.
Reading time: 48818 secs.
Reading: 1460000000
Memory used: 11237 MB.
Reading time: 49017 secs.
Reading: 1490000000
Memory used: 11322 MB.
Reading time: 49615 secs.
Reading: 1500000000
Memory used: 11349 MB.
Reading time: 49815 secs.
Reading: 1510000000
Memory used: 11377 MB.
Reading time: 50013 secs.
Reading: 1520000000
Memory used: 11403 MB.
Reading time: 50211 secs.
Reading: 1530000000
Memory used: 11431 MB.
Reading time: 50410 secs.
Reading: 1540000000
Memory used: 11458 MB.
Reading time: 50611 secs.
Reading: 1550000000
Memory used: 11484 MB.
Reading time: 50811 secs.
Reading: 1560000000
Memory used: 11511 MB.
Reading time: 51009 secs.
Reading: 1570000000
Memory used: 11537 MB.
Reading time: 51208 secs.
Reading: 1600000000
Memory used: 11617 MB.
Reading time: 51814 secs.
Reading: 1610000000
Memory used: 11644 MB.
Reading time: 52015 secs.
Reading: 1620000000
Memory used: 11670 MB.
Reading time: 52217 secs.
Reading: 1630000000
Memory used: 11698 MB.
Reading time: 52423 secs.
Reading: 1660000000
Memory used: 11779 MB.
Reading time: 53033 secs.
Reading: 1670000000
Memory used: 11805 MB.
Reading time: 53236 secs.
Reading: 1680000000
Memory used: 11832 MB.
Reading time: 53440 secs.
Reading: 1690000000
Memory used: 11858 MB.
Reading time: 53644 secs.
Reading: 1700000000
Memory used: 11885 MB.
Reading time: 53849 secs.
Reading: 1710000000
Memory used: 11911 MB.
Reading time: 54052 secs.
Reading: 1730000000
Memory used: 11966 MB.
Reading time: 54465 secs.
Reading: 1740000000
Memory used: 11992 MB.
Reading time: 54669 secs.
Reading: 1750000000
Memory used: 12019 MB.
Reading time: 54873 secs.
Reading: 1760000000
Memory used: 12045 MB.
Reading time: 55077 secs.
20/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq
Reading: 1770000000
Memory used: 12073 MB.
Reading time: 55287 secs.
Reading: 1780000000
Memory used: 12103 MB.
Reading time: 55504 secs.
Reading: 1790000000
Memory used: 12134 MB.
Reading time: 55721 secs.
Reading: 1800000000
Memory used: 12165 MB.
Reading time: 55938 secs.
Reading: 1810000000
Memory used: 12197 MB.
Reading time: 56155 secs.
Reading: 1820000000
Memory used: 12228 MB.
Reading time: 56373 secs.
Reading: 1830000000
Memory used: 12260 MB.
Reading time: 56591 secs.
Reading: 1840000000
Memory used: 12292 MB.
Reading time: 56807 secs.
Reading: 1850000000
Memory used: 12324 MB.
Reading time: 57024 secs.
Reading: 1860000000
Memory used: 12357 MB.
Reading time: 57242 secs.
Reading: 1870000000
Memory used: 12390 MB.
Reading time: 57461 secs.
Reading: 1880000000
Memory used: 12422 MB.
Reading time: 57679 secs.
Reading: 1890000000
Memory used: 12455 MB.
Reading time: 57897 secs.
Reading: 1900000000
Memory used: 12488 MB.
Reading time: 58114 secs.
Reading: 1910000000
Memory used: 12522 MB.
Reading time: 58333 secs.
Reading: 1920000000
Memory used: 12555 MB.
Reading time: 58554 secs.
Reading: 1930000000
Memory used: 12588 MB.
Reading time: 58774 secs.
Reading: 1950000000
Memory used: 12656 MB.
Reading time: 59220 secs.
Reading: 1960000000
Memory used: 12690 MB.
Reading time: 59444 secs.
Reading: 1970000000
Memory used: 12725 MB.
Reading time: 59668 secs.
Reading: 1980000000
Memory used: 12760 MB.
Reading time: 59889 secs.
Reading: 1990000000
Memory used: 12795 MB.
Reading time: 60112 secs.
Reading: 2000000000
Memory used: 12831 MB.
Reading time: 60336 secs.
Reading: 2010000000
Memory used: 12867 MB.
Reading time: 60555 secs.
Reading: 2070000000
Memory used: 13085 MB.
Reading time: 61892 secs.
Reading: 2090000000
Memory used: 13159 MB.
Reading time: 62328 secs.
Reading: 2100000000
Memory used: 13196 MB.
Reading time: 62549 secs.
Reading: 2110000000
Memory used: 13233 MB.
Reading time: 62769 secs.
Reading: 2120000000
Memory used: 13270 MB.
Reading time: 62990 secs.
Reading: 2130000000
Memory used: 13308 MB.
Reading time: 63210 secs.
21/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq
Reading: 2150000000
Memory used: 13377 MB.
Reading time: 63633 secs.
Reading: 2170000000
Memory used: 13429 MB.
Reading time: 64002 secs.
Reading: 2180000000
Memory used: 13454 MB.
Reading time: 64186 secs.
Reading: 2190000000
Memory used: 13480 MB.
Reading time: 64370 secs.
Reading: 2200000000
Memory used: 13505 MB.
Reading time: 64553 secs.
Reading: 2220000000
Memory used: 13557 MB.
Reading time: 64918 secs.
Reading: 2230000000
Memory used: 13583 MB.
Reading time: 65100 secs.
Reading: 2270000000
Memory used: 13692 MB.
Reading time: 65832 secs.
Reading: 2280000000
Memory used: 13719 MB.
Reading time: 66016 secs.
Reading: 2300000000
Memory used: 13775 MB.
Reading time: 66379 secs.
Reading: 2310000000
Memory used: 13803 MB.
Reading time: 66558 secs.
Reading: 2330000000
Memory used: 13860 MB.
Reading time: 66919 secs.
Reading: 2350000000
Memory used: 13921 MB.
Reading time: 67288 secs.
Reading: 2370000000
Memory used: 13980 MB.
Reading time: 67645 secs.
Reading: 2380000000
Memory used: 14010 MB.
Reading time: 67823 secs.
Reading: 2400000000
Memory used: 14071 MB.
Reading time: 68178 secs.
Reading: 2420000000
Memory used: 14133 MB.
Reading time: 68529 secs.
Reading: 2430000000
Memory used: 14164 MB.
Reading time: 68707 secs.
Reading: 2440000000
Memory used: 14196 MB.
Reading time: 68886 secs.
Reading: 2450000000
Memory used: 14228 MB.
Reading time: 69065 secs.
Reading: 2470000000
Memory used: 14293 MB.
Reading time: 69420 secs.
Reading: 2480000000
Memory used: 14325 MB.
Reading time: 69598 secs.
Reading: 2490000000
Memory used: 14357 MB.
Reading time: 69775 secs.
Reading: 2500000000
Memory used: 14390 MB.
Reading time: 69952 secs.
Reading: 2510000000
Memory used: 14423 MB.
Reading time: 70128 secs.
Reading: 2520000000
Memory used: 14456 MB.
Reading time: 70304 secs.
Reading: 2540000000
Memory used: 14524 MB.
Reading time: 70674 secs.
Reading: 2550000000
Memory used: 14558 MB.
Reading time: 70858 secs.
Reading: 2560000000
Memory used: 14593 MB.
Reading time: 71043 secs.
Reading: 2570000000
Memory used: 14627 MB.
Reading time: 71227 secs.
Reading: 2580000000
Memory used: 14661 MB.
Reading time: 71413 secs.
Reading: 2590000000
Memory used: 14696 MB.
Reading time: 71597 secs.
Reading: 2600000000
Memory used: 14731 MB.
Reading time: 71780 secs.
Reading: 2610000000
Memory used: 14766 MB.
Reading time: 71962 secs.
Reading: 2620000000
Memory used: 14802 MB.
Reading time: 72147 secs.
Reading: 2650000000
Memory used: 14910 MB.
Reading time: 72705 secs.
Reading: 2660000000
Memory used: 14946 MB.
Reading time: 72890 secs.
Reading: 2670000000
Memory used: 14982 MB.
Reading time: 73073 secs.
Reading: 2710000000
Memory used: 15129 MB.
Reading time: 73805 secs.
Reading: 2740000000
Memory used: 15241 MB.
Reading time: 74373 secs.
Reading: 2770000000
Memory used: 15356 MB.
Reading time: 74933 secs.
Reading: 2780000000
Memory used: 15394 MB.
Reading time: 75116 secs.
Reading: 2790000000
Memory used: 15433 MB.
Reading time: 75299 secs.
Reading: 2850000000
Memory used: 15670 MB.
Reading time: 76413 secs.
Reading: 2870000000
Memory used: 15750 MB.
Reading time: 76780 secs.
Reading: 2890000000
Memory used: 15831 MB.
Reading time: 77148 secs.
22/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq
Reading: 2900000000
Memory used: 15877 MB.
Reading time: 77354 secs.
Reading: 2910000000
Memory used: 15922 MB.
Reading time: 77557 secs.
Reading: 2930000000
Memory used: 16013 MB.
Reading time: 77967 secs.
Reading: 2960000000
Memory used: 16153 MB.
Reading time: 78582 secs.
Reading: 2970000000
Memory used: 16201 MB.
Reading time: 78786 secs.
Reading: 2980000000
Memory used: 16250 MB.
Reading time: 78990 secs.
Reading: 3000000000
Memory used: 16348 MB.
Reading time: 79402 secs.
Reading: 3010000000
Memory used: 16398 MB.
Reading time: 79606 secs.
Reading: 3020000000
Memory used: 16448 MB.
Reading time: 79810 secs.
Reading: 3050000000
Memory used: 16600 MB.
Reading time: 80424 secs.
Reading: 3060000000
Memory used: 16652 MB.
Reading time: 80628 secs.
Reading: 3070000000
Memory used: 16704 MB.
Reading time: 80832 secs.
Reading: 3090000000
Memory used: 16809 MB.
Reading time: 81248 secs.
Reading: 3110000000
Memory used: 16916 MB.
Reading time: 81659 secs.
Reading: 3120000000
Memory used: 16970 MB.
Reading time: 81865 secs.
Reading: 3170000000
Memory used: 17245 MB.
Reading time: 82897 secs.
Reading: 3200000000
Memory used: 17415 MB.
Reading time: 83514 secs.
Reading: 3210000000
Memory used: 17473 MB.
Reading time: 83718 secs.
Reading: 3230000000
Memory used: 17587 MB.
Reading time: 84130 secs.
Reading: 3250000000
Memory used: 17704 MB.
Reading time: 84539 secs.
Reading: 3260000000
Memory used: 17763 MB.
Reading time: 84744 secs.
Reading: 3280000000
Memory used: 17881 MB.
Reading time: 85164 secs.
Reading: 3290000000
Memory used: 17939 MB.
Reading time: 85386 secs.
Reading: 3300000000
Memory used: 17998 MB.
Reading time: 85601 secs.
Reading: 3320000000
Memory used: 18117 MB.
Reading time: 86029 secs.
Reading: 3340000000
Memory used: 18239 MB.
Reading time: 86453 secs.
Reading: 3350000000
Memory used: 18301 MB.
Reading time: 86662 secs.
Reading: 3360000000
Memory used: 18361 MB.
Reading time: 86876 secs.
Reading: 3380000000
Memory used: 18486 MB.
Reading time: 87297 secs.
Reading: 3390000000
Memory used: 18548 MB.
Reading time: 87507 secs.
Reading: 3450000000
Memory used: 18931 MB.
Reading time: 88770 secs.
Reading: 3460000000
Memory used: 18995 MB.
Reading time: 88999 secs.
Reading: 3470000000
Memory used: 19060 MB.
Reading time: 89224 secs.
Reading: 3480000000
Memory used: 19125 MB.
Reading time: 89434 secs.
Reading: 3500000000
Memory used: 19255 MB.
Reading time: 89858 secs.
Reading: 3510000000
Memory used: 19321 MB.
Reading time: 90071 secs.
Reading: 3520000000
Memory used: 19388 MB.
Reading time: 90281 secs.
Reading: 3540000000
Memory used: 19522 MB.
Reading time: 90703 secs.
Reading: 3550000000
Memory used: 19589 MB.
Reading time: 90918 secs.
Reading: 3560000000
Memory used: 19657 MB.
Reading time: 91131 secs.
Reading: 3570000000
Memory used: 19725 MB.
Reading time: 91342 secs.
Reading: 3580000000
Memory used: 19792 MB.
Reading time: 91557 secs.
Reading: 3590000000
Memory used: 19860 MB.
Reading time: 91769 secs.
Reading: 3600000000
Memory used: 19928 MB.
Reading time: 91981 secs.
Reading: 3610000000
Memory used: 19997 MB.
Reading time: 92195 secs.
Reading: 3620000000
Memory used: 20067 MB.
Reading time: 92408 secs.
Reading: 3630000000
Memory used: 20137 MB.
Reading time: 92622 secs.
23/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq
Reading: 3640000000
Memory used: 20201 MB.
Reading time: 92837 secs.
Reading: 3650000000
Memory used: 20253 MB.
Reading time: 93050 secs.
Reading: 3680000000
Memory used: 20398 MB.
Reading time: 93683 secs.
Reading: 3720000000
Memory used: 20589 MB.
Reading time: 94489 secs.
Reading: 3740000000
Memory used: 20685 MB.
Reading time: 94885 secs.
Reading: 3750000000
Memory used: 20733 MB.
Reading time: 95085 secs.
Reading: 3760000000
Memory used: 20779 MB.
Reading time: 95289 secs.
Reading: 3790000000
Memory used: 20916 MB.
Reading time: 95893 secs.
Reading: 3820000000
Memory used: 21056 MB.
Reading time: 96490 secs.
Reading: 3840000000
Memory used: 21148 MB.
Reading time: 96889 secs.
Reading: 3850000000
Memory used: 21196 MB.
Reading time: 97089 secs.
Reading: 3870000000
Memory used: 21292 MB.
Reading time: 97499 secs.
Reading: 3880000000
Memory used: 21337 MB.
Reading time: 97703 secs.
Reading: 3890000000
Memory used: 21383 MB.
Reading time: 97907 secs.
Reading: 3900000000
Memory used: 21428 MB.
Reading time: 98109 secs.
Reading: 3910000000
Memory used: 21474 MB.
Reading time: 98312 secs.
Reading: 3920000000
Memory used: 21519 MB.
Reading time: 98515 secs.
Reading: 3930000000
Memory used: 21565 MB.
Reading time: 98717 secs.
Reading: 3940000000
Memory used: 21611 MB.
Reading time: 98920 secs.
Reading: 3950000000
Memory used: 21657 MB.
Reading time: 99143 secs.
Reading: 3960000000
Memory used: 21704 MB.
Reading time: 99346 secs.
Reading: 3970000000
Memory used: 21751 MB.
Reading time: 99550 secs.
Reading: 3980000000
Memory used: 21796 MB.
Reading time: 99756 secs.
Reading: 4000000000
Memory used: 21887 MB.
Reading time: 100167 secs.
Reading: 4020000000
Memory used: 21978 MB.
Reading time: 100576 secs.
Reading: 4030000000
Memory used: 22025 MB.
Reading time: 100780 secs.
Reading: 4060000000
Memory used: 22163 MB.
Reading time: 101392 secs.
Reading: 4070000000
Memory used: 22211 MB.
Reading time: 101595 secs.
Reading: 4080000000
Memory used: 22258 MB.
Reading time: 101803 secs.
Reading: 4090000000
Memory used: 22305 MB.
Reading time: 102011 secs.
Reading: 4100000000
Memory used: 22352 MB.
Reading time: 102220 secs.
Reading: 4110000000
Memory used: 22399 MB.
Reading time: 102428 secs.
Reading: 4120000000
Memory used: 22446 MB.
Reading time: 102635 secs.
Reading: 4130000000
Memory used: 22493 MB.
Reading time: 102841 secs.
Reading: 4150000000
Memory used: 22590 MB.
Reading time: 103270 secs.
Reading: 4160000000
Memory used: 22639 MB.
Reading time: 103478 secs.
Reading: 4170000000
Memory used: 22687 MB.
Reading time: 103685 secs.
Reading: 4180000000
Memory used: 22738 MB.
Reading time: 103892 secs.
Reading: 4190000000
Memory used: 22789 MB.
Reading time: 104105 secs.
Reading: 4210000000
Memory used: 22884 MB.
Reading time: 104531 secs.
Reading: 4220000000
Memory used: 22934 MB.
Reading time: 104744 secs.
Reading: 4230000000
Memory used: 22983 MB.
Reading time: 104957 secs.
Reading: 4240000000
Memory used: 23030 MB.
Reading time: 105168 secs.
Reading: 4250000000
Memory used: 23079 MB.
Reading time: 105376 secs.
Reading: 4270000000
Memory used: 23174 MB.
Reading time: 105798 secs.
Reading: 4290000000
Memory used: 23271 MB.
Reading time: 106217 secs.
Reading: 4300000000
Memory used: 23318 MB.
Reading time: 106428 secs.
Reading: 4320000000
Memory used: 23410 MB.
Reading time: 106856 secs.
Reading: 4330000000
Memory used: 23457 MB.
Reading time: 107070 secs.
Reading: 4350000000
Memory used: 23551 MB.
Reading time: 107497 secs.
Reading: 4370000000
Memory used: 23648 MB.
Reading time: 107925 secs.
Reading: 4380000000
Memory used: 23695 MB.
Reading time: 108138 secs.
Reading: 4390000000
Memory used: 23743 MB.
Reading time: 108351 secs.
Reading: 4400000000
Memory used: 23792 MB.
Reading time: 108565 secs.
Reading: 4410000000
Memory used: 23844 MB.
Reading time: 108784 secs.
Reading: 4430000000
Memory used: 23939 MB.
Reading time: 109226 secs.
Reading: 4440000000
Memory used: 23986 MB.
Reading time: 109442 secs.
Reading: 4490000000
Memory used: 24219 MB.
Reading time: 110520 secs.
24/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq
Reading: 4520000000
Memory used: 24374 MB.
Reading time: 111180 secs.
Reading: 4540000000
Memory used: 24499 MB.
Reading time: 111642 secs.
Reading: 4560000000
Memory used: 24625 MB.
Reading time: 112101 secs.
Reading: 4590000000
Memory used: 24818 MB.
Reading time: 112789 secs.
Reading: 4610000000
Memory used: 24950 MB.
Reading time: 113249 secs.
Reading: 4620000000
Memory used: 25017 MB.
Reading time: 113479 secs.
Reading: 4630000000
Memory used: 25082 MB.
Reading time: 113711 secs.
Reading: 4640000000
Memory used: 25145 MB.
Reading time: 113945 secs.
Reading: 4650000000
Memory used: 25209 MB.
Reading time: 114178 secs.
Reading: 4660000000
Memory used: 25273 MB.
Reading time: 114411 secs.
Reading: 4680000000
Memory used: 25402 MB.
Reading time: 114877 secs.
Reading: 4710000000
Memory used: 25600 MB.
Reading time: 115569 secs.
Reading: 4730000000
Memory used: 25737 MB.
Reading time: 116032 secs.
Reading: 4750000000
Memory used: 25866 MB.
Reading time: 116497 secs.
Reading: 4760000000
Memory used: 25931 MB.
Reading time: 116730 secs.
Reading: 4780000000
Memory used: 26061 MB.
Reading time: 117192 secs.
Reading: 4800000000
Memory used: 26192 MB.
Reading time: 117651 secs.
Reading: 4810000000
Memory used: 26258 MB.
Reading time: 117881 secs.
Reading: 4830000000
Memory used: 26392 MB.
Reading time: 118341 secs.
Reading: 4840000000
Memory used: 26460 MB.
Reading time: 118571 secs.
Reading: 4850000000
Memory used: 26526 MB.
Reading time: 118804 secs.
Reading: 4860000000
Memory used: 26591 MB.
Reading time: 119037 secs.
Reading: 4870000000
Memory used: 26656 MB.
Reading time: 119271 secs.
Reading: 4890000000
Memory used: 26788 MB.
Reading time: 119745 secs.
Reading: 4900000000
Memory used: 26855 MB.
Reading time: 119979 secs.
Reading: 4910000000
Memory used: 26922 MB.
Reading time: 120213 secs.
Reading: 4930000000
Memory used: 27056 MB.
Reading time: 120681 secs.
Reading: 4950000000
Memory used: 27194 MB.
Reading time: 121149 secs.
Reading: 4960000000
Memory used: 27262 MB.
Reading time: 121387 secs.
Reading: 4970000000
Memory used: 27331 MB.
Reading time: 121626 secs.
Reading: 4980000000
Memory used: 27402 MB.
Reading time: 121867 secs.
Reading: 4990000000
Memory used: 27472 MB.
Reading time: 122104 secs.
Reading: 5000000000
Memory used: 27541 MB.
Reading time: 122341 secs.
Reading: 5010000000
Memory used: 27613 MB.
Reading time: 122579 secs.
Reading: 5020000000
Memory used: 27685 MB.
Reading time: 122817 secs.
Reading: 5040000000
Memory used: 27831 MB.
Reading time: 123297 secs.
Reading: 5050000000
Memory used: 27904 MB.
Reading time: 123536 secs.
Reading: 5060000000
Memory used: 27978 MB.
Reading time: 123777 secs.
Reading: 5070000000
Memory used: 28047 MB.
Reading time: 124016 secs.
Reading: 5080000000
Memory used: 28116 MB.
Reading time: 124257 secs.
Reading: 5090000000
Memory used: 28184 MB.
Reading time: 124497 secs.
Reading: 5100000000
Memory used: 28253 MB.
Reading time: 124738 secs.
Reading: 5110000000
Memory used: 28322 MB.
Reading time: 124977 secs.
Reading: 5120000000
Memory used: 28393 MB.
Reading time: 125215 secs.
Reading: 5130000000
Memory used: 28464 MB.
Reading time: 125455 secs.
Reading: 5140000000
Memory used: 28534 MB.
Reading time: 125695 secs.
Reading: 5150000000
Memory used: 28605 MB.
Reading time: 125936 secs.
Reading: 5170000000
Memory used: 28750 MB.
Reading time: 126420 secs.
Reading: 5180000000
Memory used: 28818 MB.
Reading time: 126660 secs.
Reading: 5200000000
Memory used: 28953 MB.
Reading time: 127143 secs.
Reading: 5210000000
Memory used: 29021 MB.
Reading time: 127382 secs.
Reading: 5220000000
Memory used: 29089 MB.
Reading time: 127620 secs.
Reading: 5230000000
Memory used: 29158 MB.
Reading time: 127858 secs.
Reading: 5240000000
Memory used: 29227 MB.
Reading time: 128093 secs.
Reading: 5250000000
Memory used: 29297 MB.
Reading time: 128329 secs.
Reading: 5260000000
Memory used: 29366 MB.
Reading time: 128563 secs.
Reading: 5270000000
Memory used: 29437 MB.
Reading time: 128802 secs.
Reading: 5290000000
Memory used: 29579 MB.
Reading time: 129273 secs.
Reading: 5300000000
Memory used: 29648 MB.
Reading time: 129509 secs.
Reading: 5310000000
Memory used: 29716 MB.
Reading time: 129742 secs.
Reading: 5320000000
Memory used: 29786 MB.
Reading time: 129975 secs.
Reading: 5330000000
Memory used: 29856 MB.
Reading time: 130207 secs.
Reading: 5340000000
Memory used: 29925 MB.
Reading time: 130439 secs.
Reading: 5350000000
Memory used: 29994 MB.
Reading time: 130670 secs.
Reading: 5360000000
Memory used: 30062 MB.
Reading time: 130902 secs.
Reading: 5370000000
Memory used: 30131 MB.
Reading time: 131134 secs.
25/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq
Reading: 5390000000
Memory used: 30271 MB.
Reading time: 131601 secs.
Reading: 5400000000
Memory used: 30313 MB.
Reading time: 131829 secs.
Reading: 5420000000
Memory used: 30396 MB.
Reading time: 132279 secs.
Reading: 5470000000
Memory used: 30614 MB.
Reading time: 133407 secs.
Reading: 5480000000
Memory used: 30657 MB.
Reading time: 133629 secs.
Reading: 5500000000
Memory used: 30747 MB.
Reading time: 134077 secs.
Reading: 5510000000
Memory used: 30791 MB.
Reading time: 134299 secs.
Reading: 5520000000
Memory used: 30839 MB.
Reading time: 134526 secs.
Reading: 5540000000
Memory used: 30932 MB.
Reading time: 134985 secs.
Reading: 5550000000
Memory used: 30980 MB.
Reading time: 135214 secs.
Reading: 5560000000
Memory used: 31028 MB.
Reading time: 135444 secs.
Reading: 5570000000
Memory used: 31074 MB.
Reading time: 135672 secs.
Reading: 5580000000
Memory used: 31123 MB.
Reading time: 135901 secs.
Reading: 5610000000
Memory used: 31271 MB.
Reading time: 136587 secs.
Reading: 5620000000
Memory used: 31321 MB.
Reading time: 136816 secs.
Reading: 5630000000
Memory used: 31369 MB.
Reading time: 137043 secs.
26/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq
Reading: 5640000000
Memory used: 31421 MB.
Reading time: 137270 secs.
Reading: 5650000000
Memory used: 31487 MB.
Reading time: 137523 secs.
Reading: 5660000000
Memory used: 31552 MB.
Reading time: 137775 secs.
Reading: 5690000000
Memory used: 31752 MB.
Reading time: 138549 secs.
Reading: 5700000000
Memory used: 31820 MB.
Reading time: 138800 secs.
Reading: 5710000000
Memory used: 31890 MB.
Reading time: 139052 secs.
Reading: 5720000000
Memory used: 31958 MB.
Reading time: 139302 secs.
Reading: 5730000000
Memory used: 32027 MB.
Reading time: 139549 secs.
Reading: 5740000000
Memory used: 32097 MB.
Reading time: 139798 secs.
Reading: 5750000000
Memory used: 32167 MB.
Reading time: 140046 secs.
Reading: 5770000000
Memory used: 32311 MB.
Reading time: 140546 secs.
Reading: 5780000000
Memory used: 32387 MB.
Reading time: 140804 secs.
Reading: 5800000000
Memory used: 32540 MB.
Reading time: 141317 secs.
Reading: 5810000000
Memory used: 32616 MB.
Reading time: 141570 secs.
Reading: 5820000000
Memory used: 32691 MB.
Reading time: 141822 secs.
Reading: 5830000000
Memory used: 32770 MB.
Reading time: 142075 secs.
Reading: 5840000000
Memory used: 32848 MB.
Reading time: 142330 secs.
Reading: 5850000000
Memory used: 32927 MB.
Reading time: 142583 secs.
Reading: 5860000000
Memory used: 33007 MB.
Reading time: 142837 secs.
27/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq
Reading: 5900000000
Memory used: 33305 MB.
Reading time: 143841 secs.
Reading: 5920000000
Memory used: 33409 MB.
Reading time: 144316 secs.
Reading: 5930000000
Memory used: 33461 MB.
Reading time: 144555 secs.
Reading: 5990000000
Memory used: 33765 MB.
Reading time: 145999 secs.
Reading: 6000000000
Memory used: 33816 MB.
Reading time: 146240 secs.
Reading: 6020000000
Memory used: 33913 MB.
Reading time: 146727 secs.
Reading: 6040000000
Memory used: 34013 MB.
Reading time: 147212 secs.
Reading: 6050000000
Memory used: 34063 MB.
Reading time: 147457 secs.
Reading: 6100000000
Memory used: 34320 MB.
Reading time: 148723 secs.
Reading: 6130000000
Memory used: 34467 MB.
Reading time: 149468 secs.
Reading: 6140000000
Memory used: 34518 MB.
Reading time: 149717 secs.
Reading: 6150000000
Memory used: 34568 MB.
Reading time: 149968 secs.
Reading: 6160000000
Memory used: 34616 MB.
Reading time: 150216 secs.
Reading: 6170000000
Memory used: 34663 MB.
Reading time: 150463 secs.
28/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq
Reading: 6180000000
Memory used: 34721 MB.
Reading time: 150721 secs.
Reading: 6190000000
Memory used: 34788 MB.
Reading time: 150988 secs.
Reading: 6200000000
Memory used: 34856 MB.
Reading time: 151253 secs.
Reading: 6220000000
Memory used: 34994 MB.
Reading time: 151785 secs.
Reading: 6230000000
Memory used: 35062 MB.
Reading time: 152058 secs.
Reading: 6240000000
Memory used: 35131 MB.
Reading time: 152324 secs.
Reading: 6260000000
Memory used: 35270 MB.
Reading time: 152857 secs.
Reading: 6280000000
Memory used: 35408 MB.
Reading time: 153385 secs.
Reading: 6290000000
Memory used: 35477 MB.
Reading time: 153650 secs.
Reading: 6300000000
Memory used: 35547 MB.
Reading time: 153915 secs.
Reading: 6310000000
Memory used: 35617 MB.
Reading time: 154179 secs.
Reading: 6320000000
Memory used: 35688 MB.
Reading time: 154442 secs.
Reading: 6330000000
Memory used: 35764 MB.
Reading time: 154708 secs.
Reading: 6340000000
Memory used: 35840 MB.
Reading time: 154970 secs.
Reading: 6350000000
Memory used: 35918 MB.
Reading time: 155234 secs.
Reading: 6360000000
Memory used: 35992 MB.
Reading time: 155497 secs.
Reading: 6370000000
Memory used: 36064 MB.
Reading time: 155758 secs.
Reading: 6400000000
Memory used: 36283 MB.
Reading time: 156543 secs.
Reading: 6420000000
Memory used: 36426 MB.
Reading time: 157067 secs.
Reading: 6430000000
Memory used: 36501 MB.
Reading time: 157331 secs.
Reading: 6440000000
Memory used: 36573 MB.
Reading time: 157596 secs.
Reading: 6450000000
Memory used: 36645 MB.
Reading time: 157858 secs.
29/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R1_001_val_1_val_1.fastq
30/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R2_001_val_2_val_2.fastq
31/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R1_001_val_1_val_1.fastq
32/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R2_001_val_2_val_2.fastq
33/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R1_001_val_1_val_1.fastq
34/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R2_001_val_2_val_2.fastq
35/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R1_001_val_1_val_1.fastq
Reading: 6470000000
Memory used: 36833 MB.
Reading time: 158443 secs.
36/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R2_001_val_2_val_2.fastq
37/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fastq
Reading: 6480000000
Memory used: 36906 MB.
Reading time: 158781 secs.
Reading: 6490000000
Memory used: 36937 MB.
Reading time: 159148 secs.
Reading: 6500000000
Memory used: 36970 MB.
Reading time: 159520 secs.
Reading: 6510000000
Memory used: 36998 MB.
Reading time: 159888 secs.
Reading: 6520000000
Memory used: 37026 MB.
Reading time: 160259 secs.
Reading: 6530000000
Memory used: 37054 MB.
Reading time: 160635 secs.
Reading: 6540000000
Memory used: 37083 MB.
Reading time: 161018 secs.
Reading: 6550000000
Memory used: 37109 MB.
Reading time: 161397 secs.
Reading: 6560000000
Memory used: 37135 MB.
Reading time: 161773 secs.
38/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2.fastq
Reading: 6570000000
Memory used: 37162 MB.
Reading time: 162150 secs.
Reading: 6580000000
Memory used: 37201 MB.
Reading time: 162535 secs.
Reading: 6590000000
Memory used: 37243 MB.
Reading time: 162920 secs.
Reading: 6600000000
Memory used: 37287 MB.
Reading time: 163307 secs.
Reading: 6610000000
Memory used: 37327 MB.
Reading time: 163690 secs.
Reading: 6620000000
Memory used: 37375 MB.
Reading time: 164080 secs.
Reading: 6630000000
Memory used: 37425 MB.
Reading time: 164469 secs.
Reading: 6640000000
Memory used: 37464 MB.
Reading time: 164853 secs.
Reading: 6650000000
Memory used: 37503 MB.
Reading time: 165239 secs.
Reading: 6660000000
Memory used: 37553 MB.
Reading time: 165638 secs.
39/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1.fastq
Reading: 6670000000
Memory used: 37592 MB.
Reading time: 166020 secs.
Reading: 6680000000
Memory used: 37627 MB.
Reading time: 166397 secs.
Reading: 6690000000
Memory used: 37664 MB.
Reading time: 166776 secs.
Reading: 6700000000
Memory used: 37697 MB.
Reading time: 167153 secs.
Reading: 6710000000
Memory used: 37728 MB.
Reading time: 167528 secs.
Reading: 6720000000
Memory used: 37762 MB.
Reading time: 167903 secs.
Reading: 6730000000
Memory used: 37794 MB.
Reading time: 168275 secs.
40/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fastq
Reading: 6740000000
Memory used: 37833 MB.
Reading time: 168647 secs.
Reading: 6750000000
Memory used: 37884 MB.
Reading time: 169023 secs.
Reading: 6760000000
Memory used: 37938 MB.
Reading time: 169398 secs.
Reading: 6770000000
Memory used: 37987 MB.
Reading time: 169769 secs.
Reading: 6780000000
Memory used: 38036 MB.
Reading time: 170138 secs.
Reading: 6790000000
Memory used: 38085 MB.
Reading time: 170505 secs.
Reading: 6800000000
Memory used: 38133 MB.
Reading time: 170872 secs.
41/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fastq
Reading: 6810000000
Memory used: 38184 MB.
Reading time: 171240 secs.
Reading: 6820000000
Memory used: 38225 MB.
Reading time: 171601 secs.
Reading: 6830000000
Memory used: 38266 MB.
Reading time: 171963 secs.
Reading: 6840000000
Memory used: 38304 MB.
Reading time: 172324 secs.
Reading: 6850000000
Memory used: 38348 MB.
Reading time: 172688 secs.
Reading: 6860000000
Memory used: 38418 MB.
Reading time: 173059 secs.
Reading: 6870000000
Memory used: 38466 MB.
Reading time: 173424 secs.
Reading: 6880000000
Memory used: 38515 MB.
Reading time: 173789 secs.
42/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2.fastq
Reading: 6890000000
Memory used: 38573 MB.
Reading time: 174158 secs.
Reading: 6900000000
Memory used: 38649 MB.
Reading time: 174538 secs.
Reading: 6910000000
Memory used: 38728 MB.
Reading time: 174919 secs.
Reading: 6920000000
Memory used: 38801 MB.
Reading time: 175297 secs.
Reading: 6930000000
Memory used: 38887 MB.
Reading time: 175682 secs.
Reading: 6940000000
Memory used: 38988 MB.
Reading time: 176072 secs.
Reading: 6950000000
Memory used: 39096 MB.
Reading time: 176465 secs.
Reading: 6960000000
Memory used: 39208 MB.
Reading time: 176861 secs.
43/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_1.fastq
44/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_2.fastq
45/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1.fastq
46/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2.fastq
47/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1.fastq
48/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2.fastq
49/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1.fastq
50/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2.fastq
51/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1.fastq
52/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_2.fastq
53/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1.fastq
54/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2.fastq
55/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R1_001_val_1.fastq
Reading: 7680000000
Memory used: 39281 MB.
Reading time: 178013 secs.
Reading: 7690000000
Memory used: 39303 MB.
Reading time: 178277 secs.
Reading: 7700000000
Memory used: 39324 MB.
Reading time: 178541 secs.
Reading: 7710000000
Memory used: 39344 MB.
Reading time: 178806 secs.
Reading: 7720000000
Memory used: 39363 MB.
Reading time: 179071 secs.
Reading: 7730000000
Memory used: 39382 MB.
Reading time: 179336 secs.
Reading: 7740000000
Memory used: 39401 MB.
Reading time: 179601 secs.
Reading: 7750000000
Memory used: 39419 MB.
Reading time: 179867 secs.
Reading: 7760000000
Memory used: 39438 MB.
Reading time: 180133 secs.
Reading: 7770000000
Memory used: 39455 MB.
Reading time: 180399 secs.
Reading: 7780000000
Memory used: 39471 MB.
Reading time: 180665 secs.
Reading: 7790000000
Memory used: 39488 MB.
Reading time: 180932 secs.
Reading: 7810000000
Memory used: 39522 MB.
Reading time: 181467 secs.
Reading: 7830000000
Memory used: 39561 MB.
Reading time: 182002 secs.
Reading: 7840000000
Memory used: 39587 MB.
Reading time: 182270 secs.
Reading: 7850000000
Memory used: 39617 MB.
Reading time: 182539 secs.
Reading: 7860000000
Memory used: 39650 MB.
Reading time: 182810 secs.
Reading: 7870000000
Memory used: 39677 MB.
Reading time: 183081 secs.
Reading: 7880000000
Memory used: 39702 MB.
Reading time: 183351 secs.
Reading: 7890000000
Memory used: 39741 MB.
Reading time: 183626 secs.
Reading: 7900000000
Memory used: 39760 MB.
Reading time: 183894 secs.
Reading: 7910000000
Memory used: 39778 MB.
Reading time: 184163 secs.
Reading: 7920000000
Memory used: 39795 MB.
Reading time: 184430 secs.
Reading: 7930000000
Memory used: 39812 MB.
Reading time: 184698 secs.
Reading: 7940000000
Memory used: 39830 MB.
Reading time: 184967 secs.
Reading: 7950000000
Memory used: 39847 MB.
Reading time: 185235 secs.
Reading: 7960000000
Memory used: 39866 MB.
Reading time: 185505 secs.
56/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fastq
Reading: 7970000000
Memory used: 39905 MB.
Reading time: 185762 secs.
Reading: 7980000000
Memory used: 39949 MB.
Reading time: 186018 secs.
Reading: 7990000000
Memory used: 39992 MB.
Reading time: 186272 secs.
Reading: 8000000000
Memory used: 40037 MB.
Reading time: 186518 secs.
Reading: 8010000000
Memory used: 40081 MB.
Reading time: 186779 secs.
Reading: 8020000000
Memory used: 40126 MB.
Reading time: 187038 secs.
Reading: 8060000000
Memory used: 40317 MB.
Reading time: 188072 secs.
Reading: 8070000000
Memory used: 40362 MB.
Reading time: 188334 secs.
Reading: 8080000000
Memory used: 40409 MB.
Reading time: 188598 secs.
Reading: 8090000000
Memory used: 40456 MB.
Reading time: 188863 secs.
Reading: 8100000000
Memory used: 40505 MB.
Reading time: 189124 secs.
Reading: 8110000000
Memory used: 40555 MB.
Reading time: 189385 secs.
Reading: 8120000000
Memory used: 40601 MB.
Reading time: 189644 secs.
Reading: 8130000000
Memory used: 40647 MB.
Reading time: 189904 secs.
Reading: 8160000000
Memory used: 40828 MB.
Reading time: 190666 secs.
Reading: 8170000000
Memory used: 40896 MB.
Reading time: 190936 secs.
Reading: 8180000000
Memory used: 40963 MB.
Reading time: 191203 secs.
Reading: 8190000000
Memory used: 41013 MB.
Reading time: 191468 secs.
Reading: 8200000000
Memory used: 41060 MB.
Reading time: 191735 secs.
Reading: 8210000000
Memory used: 41108 MB.
Reading time: 191990 secs.
Reading: 8220000000
Memory used: 41157 MB.
Reading time: 192249 secs.
Reading: 8240000000
Memory used: 41253 MB.
Reading time: 192777 secs.
Reading: 8250000000
Memory used: 41303 MB.
Reading time: 193040 secs.
57/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R1_001_val_1.fastq
Reading: 8260000000
Memory used: 41333 MB.
Reading time: 193312 secs.
Reading: 8270000000
Memory used: 41356 MB.
Reading time: 193586 secs.
Reading: 8280000000
Memory used: 41378 MB.
Reading time: 193861 secs.
Reading: 8300000000
Memory used: 41420 MB.
Reading time: 194413 secs.
Reading: 8320000000
Memory used: 41462 MB.
Reading time: 194966 secs.
Reading: 8330000000
Memory used: 41482 MB.
Reading time: 195242 secs.
Reading: 8340000000
Memory used: 41502 MB.
Reading time: 195519 secs.
Reading: 8350000000
Memory used: 41521 MB.
Reading time: 195797 secs.
Reading: 8360000000
Memory used: 41539 MB.
Reading time: 196074 secs.
Reading: 8370000000
Memory used: 41558 MB.
Reading time: 196348 secs.
Reading: 8380000000
Memory used: 41577 MB.
Reading time: 196620 secs.
Reading: 8390000000
Memory used: 41596 MB.
Reading time: 196893 secs.
Reading: 8400000000
Memory used: 41615 MB.
Reading time: 197163 secs.
Reading: 8410000000
Memory used: 41633 MB.
Reading time: 197433 secs.
Reading: 8420000000
Memory used: 41651 MB.
Reading time: 197703 secs.
Reading: 8430000000
Memory used: 41668 MB.
Reading time: 197972 secs.
Reading: 8440000000
Memory used: 41685 MB.
Reading time: 198241 secs.
Reading: 8450000000
Memory used: 41702 MB.
Reading time: 198510 secs.
Reading: 8470000000
Memory used: 41737 MB.
Reading time: 199055 secs.
Reading: 8480000000
Memory used: 41755 MB.
Reading time: 199327 secs.
Reading: 8490000000
Memory used: 41773 MB.
Reading time: 199599 secs.
Reading: 8500000000
Memory used: 41790 MB.
Reading time: 199870 secs.
Reading: 8510000000
Memory used: 41810 MB.
Reading time: 200143 secs.
Reading: 8520000000
Memory used: 41827 MB.
Reading time: 200414 secs.
Reading: 8530000000
Memory used: 41851 MB.
Reading time: 200690 secs.
Reading: 8540000000
Memory used: 41877 MB.
Reading time: 200971 secs.
Reading: 8550000000
Memory used: 41895 MB.
Reading time: 201244 secs.
58/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R2_001_val_2.fastq
Reading: 8560000000
Memory used: 41941 MB.
Reading time: 201502 secs.
Reading: 8570000000
Memory used: 41988 MB.
Reading time: 201761 secs.
Reading: 8580000000
Memory used: 42034 MB.
Reading time: 202021 secs.
Reading: 8590000000
Memory used: 42082 MB.
Reading time: 202282 secs.
Reading: 8610000000
Memory used: 42179 MB.
Reading time: 202806 secs.
Reading: 8620000000
Memory used: 42229 MB.
Reading time: 203071 secs.
Reading: 8630000000
Memory used: 42280 MB.
Reading time: 203330 secs.
Reading: 8640000000
Memory used: 42332 MB.
Reading time: 203590 secs.
Reading: 8650000000
Memory used: 42382 MB.
Reading time: 203853 secs.
Reading: 8660000000
Memory used: 42434 MB.
Reading time: 204119 secs.
Reading: 8670000000
Memory used: 42485 MB.
Reading time: 204384 secs.
Reading: 8690000000
Memory used: 42587 MB.
Reading time: 204914 secs.
Reading: 8700000000
Memory used: 42639 MB.
Reading time: 205178 secs.
Reading: 8710000000
Memory used: 42687 MB.
Reading time: 205442 secs.
Reading: 8720000000
Memory used: 42737 MB.
Reading time: 205706 secs.
Reading: 8740000000
Memory used: 42850 MB.
Reading time: 206227 secs.
Reading: 8750000000
Memory used: 42901 MB.
Reading time: 206483 secs.
Reading: 8780000000
Memory used: 43055 MB.
Reading time: 207279 secs.
Reading: 8790000000
Memory used: 43121 MB.
Reading time: 207547 secs.
Reading: 8800000000
Memory used: 43187 MB.
Reading time: 207819 secs.
Reading: 8810000000
Memory used: 43246 MB.
Reading time: 208086 secs.
Reading: 8820000000
Memory used: 43303 MB.
Reading time: 208317 secs.
Reading: 8840000000
Memory used: 43427 MB.
Reading time: 208859 secs.
59/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001_val_1.fastq
60/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001_val_2.fastq
61/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001_val_1.fastq
62/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001_val_2.fastq
63/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001_val_1.fastq
Reading: 8850000000
Memory used: 43481 MB.
Reading time: 209125 secs.
Reading: 8860000000
Memory used: 43511 MB.
Reading time: 209402 secs.
Reading: 8870000000
Memory used: 43540 MB.
Reading time: 209682 secs.
Reading: 8880000000
Memory used: 43565 MB.
Reading time: 209961 secs.
Reading: 8890000000
Memory used: 43591 MB.
Reading time: 210241 secs.
Reading: 8900000000
Memory used: 43615 MB.
Reading time: 210520 secs.
Reading: 8920000000
Memory used: 43663 MB.
Reading time: 211083 secs.
Reading: 8930000000
Memory used: 43688 MB.
Reading time: 211361 secs.
Reading: 8940000000
Memory used: 43713 MB.
Reading time: 211640 secs.
Reading: 8950000000
Memory used: 43735 MB.
Reading time: 211919 secs.
Reading: 8960000000
Memory used: 43757 MB.
Reading time: 212199 secs.
Reading: 8980000000
Memory used: 43803 MB.
Reading time: 212760 secs.
Reading: 8990000000
Memory used: 43826 MB.
Reading time: 213041 secs.
Reading: 9000000000
Memory used: 43858 MB.
Reading time: 213321 secs.
Reading: 9010000000
Memory used: 43894 MB.
Reading time: 213602 secs.
Reading: 9020000000
Memory used: 43943 MB.
Reading time: 213886 secs.
Reading: 9030000000
Memory used: 43965 MB.
Reading time: 214162 secs.
Reading: 9040000000
Memory used: 44001 MB.
Reading time: 214443 secs.
Reading: 9060000000
Memory used: 44049 MB.
Reading time: 214930 secs.
Reading: 9070000000
Memory used: 44073 MB.
Reading time: 215201 secs.
Reading: 9080000000
Memory used: 44097 MB.
Reading time: 215472 secs.
Reading: 9100000000
Memory used: 44152 MB.
Reading time: 216019 secs.
Reading: 9110000000
Memory used: 44179 MB.
Reading time: 216292 secs.
Reading: 9120000000
Memory used: 44203 MB.
Reading time: 216565 secs.
Reading: 9130000000
Memory used: 44226 MB.
Reading time: 216839 secs.
64/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001_val_2.fastq
Reading: 9140000000
Memory used: 44268 MB.
Reading time: 217101 secs.
Reading: 9150000000
Memory used: 44320 MB.
Reading time: 217357 secs.
Reading: 9160000000
Memory used: 44372 MB.
Reading time: 217618 secs.
Reading: 9170000000
Memory used: 44424 MB.
Reading time: 217879 secs.
Reading: 9180000000
Memory used: 44477 MB.
Reading time: 218140 secs.
Reading: 9190000000
Memory used: 44530 MB.
Reading time: 218400 secs.
Reading: 9200000000
Memory used: 44584 MB.
Reading time: 218656 secs.
Reading: 9220000000
Memory used: 44694 MB.
Reading time: 219175 secs.
Reading: 9230000000
Memory used: 44749 MB.
Reading time: 219438 secs.
Reading: 9250000000
Memory used: 44858 MB.
Reading time: 219967 secs.
Reading: 9270000000
Memory used: 44970 MB.
Reading time: 220493 secs.
Reading: 9280000000
Memory used: 45025 MB.
Reading time: 220756 secs.
Reading: 9290000000
Memory used: 45093 MB.
Reading time: 221017 secs.
Reading: 9300000000
Memory used: 45161 MB.
Reading time: 221283 secs.
Reading: 9310000000
Memory used: 45226 MB.
Reading time: 221549 secs.
Reading: 9330000000
Memory used: 45351 MB.
Reading time: 222080 secs.
Reading: 9340000000
Memory used: 45435 MB.
Reading time: 222352 secs.
Reading: 9350000000
Memory used: 45492 MB.
Reading time: 222617 secs.
Reading: 9370000000
Memory used: 45605 MB.
Reading time: 223151 secs.
Reading: 9400000000
Memory used: 45779 MB.
Reading time: 223954 secs.
Reading: 9410000000
Memory used: 45835 MB.
Reading time: 224221 secs.
65/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001_val_1.fastq
Reading: 9420000000
Memory used: 45888 MB.
Reading time: 224489 secs.
Reading: 9430000000
Memory used: 45921 MB.
Reading time: 224768 secs.
Reading: 9440000000
Memory used: 45951 MB.
Reading time: 225048 secs.
Reading: 9460000000
Memory used: 46004 MB.
Reading time: 225609 secs.
Reading: 9480000000
Memory used: 46056 MB.
Reading time: 226173 secs.
Reading: 9490000000
Memory used: 46081 MB.
Reading time: 226456 secs.
Reading: 9510000000
Memory used: 46137 MB.
Reading time: 227018 secs.
Reading: 9530000000
Memory used: 46188 MB.
Reading time: 227582 secs.
Reading: 9550000000
Memory used: 46238 MB.
Reading time: 228149 secs.
Reading: 9580000000
Memory used: 46328 MB.
Reading time: 229002 secs.
Reading: 9590000000
Memory used: 46367 MB.
Reading time: 229290 secs.
Reading: 9600000000
Memory used: 46406 MB.
Reading time: 229575 secs.
Reading: 9630000000
Memory used: 46516 MB.
Reading time: 230436 secs.
Reading: 9640000000
Memory used: 46541 MB.
Reading time: 230720 secs.
Reading: 9650000000
Memory used: 46568 MB.
Reading time: 231003 secs.
Reading: 9660000000
Memory used: 46596 MB.
Reading time: 231287 secs.
Reading: 9680000000
Memory used: 46645 MB.
Reading time: 231856 secs.
Reading: 9690000000
Memory used: 46670 MB.
Reading time: 232142 secs.
Reading: 9700000000
Memory used: 46695 MB.
Reading time: 232427 secs.
66/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fastq
Reading: 9710000000
Memory used: 46735 MB.
Reading time: 232707 secs.
Reading: 9720000000
Memory used: 46793 MB.
Reading time: 232977 secs.
Reading: 9750000000
Memory used: 46965 MB.
Reading time: 233796 secs.
Reading: 9780000000
Memory used: 47139 MB.
Reading time: 234611 secs.
Reading: 9800000000
Memory used: 47258 MB.
Reading time: 235176 secs.
Reading: 9810000000
Memory used: 47318 MB.
Reading time: 235455 secs.
Reading: 9820000000
Memory used: 47377 MB.
Reading time: 235733 secs.
Reading: 9840000000
Memory used: 47496 MB.
Reading time: 236284 secs.
Reading: 9850000000
Memory used: 47554 MB.
Reading time: 236559 secs.
Reading: 9900000000
Memory used: 47972 MB.
Reading time: 237978 secs.
Reading: 9910000000
Memory used: 48063 MB.
Reading time: 238265 secs.
Reading: 9950000000
Memory used: 48343 MB.
Reading time: 239379 secs.
Reading: 9960000000
Memory used: 48403 MB.
Reading time: 239658 secs.
Reading: 9970000000
Memory used: 48464 MB.
Reading time: 239936 secs.
Reading: 9980000000
Memory used: 48527 MB.
Reading time: 240213 secs.
Reading: 9990000000
Memory used: 48587 MB.
Reading time: 240488 secs.
67/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001_val_1.fastq
68/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001_val_2.fastq
69/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001_val_1.fastq
70/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fastq
71/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001_val_1.fastq
72/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001_val_2.fastq
73/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001_val_1.fastq
74/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001_val_2.fastq
75/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R1_001_val_1.fastq
76/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R2_001_val_2.fastq
77/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R1_001_val_1.fastq
78/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fastq
79/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R1_001_val_1.fastq
80/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R2_001_val_2.fastq
81/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001_val_1.fastq
82/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001_val_2.fastq
83/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001_val_1.fastq
84/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001_val_2.fastq
85/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001_val_1.fastq
86/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fastq
87/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fastq
88/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001_val_2.fastq
89/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001_val_1.fastq
Reading: 10010000000
Memory used: 48676 MB.
Reading time: 241018 secs.
Reading: 10030000000
Memory used: 48727 MB.
Reading time: 241531 secs.
Reading: 10040000000
Memory used: 48752 MB.
Reading time: 241810 secs.
Reading: 10060000000
Memory used: 48800 MB.
Reading time: 242333 secs.
Reading: 10070000000
Memory used: 48826 MB.
Reading time: 242591 secs.
Reading: 10080000000
Memory used: 48851 MB.
Reading time: 242849 secs.
Reading: 10090000000
Memory used: 48874 MB.
Reading time: 243116 secs.
Reading: 10100000000
Memory used: 48898 MB.
Reading time: 243372 secs.
Reading: 10110000000
Memory used: 48922 MB.
Reading time: 243629 secs.
Reading: 10130000000
Memory used: 48968 MB.
Reading time: 244139 secs.
Reading: 10140000000
Memory used: 48991 MB.
Reading time: 244393 secs.
Reading: 10150000000
Memory used: 49051 MB.
Reading time: 244659 secs.
Reading: 10180000000
Memory used: 49156 MB.
Reading time: 245427 secs.
Reading: 10190000000
Memory used: 49192 MB.
Reading time: 245683 secs.
Reading: 10200000000
Memory used: 49226 MB.
Reading time: 245940 secs.
Reading: 10230000000
Memory used: 49297 MB.
Reading time: 246702 secs.
90/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001_val_2.fastq
Reading: 10240000000
Memory used: 49339 MB.
Reading time: 246949 secs.
Reading: 10270000000
Memory used: 49496 MB.
Reading time: 247672 secs.
Reading: 10300000000
Memory used: 49656 MB.
Reading time: 248396 secs.
Reading: 10310000000
Memory used: 49711 MB.
Reading time: 248638 secs.
Reading: 10320000000
Memory used: 49765 MB.
Reading time: 248882 secs.
Reading: 10360000000
Memory used: 49980 MB.
Reading time: 249859 secs.
Reading: 10380000000
Memory used: 50094 MB.
Reading time: 250350 secs.
Reading: 10390000000
Memory used: 50188 MB.
Reading time: 250614 secs.
Reading: 10400000000
Memory used: 50258 MB.
Reading time: 250866 secs.
Reading: 10410000000
Memory used: 50333 MB.
Reading time: 251120 secs.
Reading: 10420000000
Memory used: 50409 MB.
Reading time: 251371 secs.
Reading: 10440000000
Memory used: 50548 MB.
Reading time: 251876 secs.
Reading: 10460000000
Memory used: 50659 MB.
Reading time: 252370 secs.
Reading: 10470000000
Memory used: 50735 MB.
Reading time: 252623 secs.
91/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001_val_1.fastq
Reading: 10480000000
Memory used: 50770 MB.
Reading time: 252882 secs.
Reading: 10510000000
Memory used: 50850 MB.
Reading time: 253662 secs.
Reading: 10520000000
Memory used: 50875 MB.
Reading time: 253922 secs.
Reading: 10530000000
Memory used: 50900 MB.
Reading time: 254181 secs.
Reading: 10540000000
Memory used: 50926 MB.
Reading time: 254442 secs.
Reading: 10550000000
Memory used: 50952 MB.
Reading time: 254702 secs.
Reading: 10560000000
Memory used: 50977 MB.
Reading time: 254961 secs.
Reading: 10570000000
Memory used: 51001 MB.
Reading time: 255222 secs.
Reading: 10590000000
Memory used: 51050 MB.
Reading time: 255745 secs.
Reading: 10600000000
Memory used: 51074 MB.
Reading time: 256005 secs.
Reading: 10610000000
Memory used: 51097 MB.
Reading time: 256267 secs.
Reading: 10620000000
Memory used: 51122 MB.
Reading time: 256530 secs.
Reading: 10640000000
Memory used: 51215 MB.
Reading time: 257067 secs.
Reading: 10650000000
Memory used: 51272 MB.
Reading time: 257340 secs.
Reading: 10660000000
Memory used: 51306 MB.
Reading time: 257558 secs.
Reading: 10670000000
Memory used: 51368 MB.
Reading time: 257829 secs.
Reading: 10680000000
Memory used: 51413 MB.
Reading time: 258097 secs.
Reading: 10690000000
Memory used: 51461 MB.
Reading time: 258367 secs.
Reading: 10700000000
Memory used: 51492 MB.
Reading time: 258632 secs.
92/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001_val_2.fastq
Reading: 10720000000
Memory used: 51581 MB.
Reading time: 259143 secs.
Reading: 10740000000
Memory used: 51694 MB.
Reading time: 259653 secs.
Reading: 10750000000
Memory used: 51751 MB.
Reading time: 259910 secs.
Reading: 10770000000
Memory used: 51865 MB.
Reading time: 260415 secs.
Reading: 10780000000
Memory used: 51924 MB.
Reading time: 260668 secs.
Reading: 10790000000
Memory used: 51981 MB.
Reading time: 260923 secs.
Reading: 10810000000
Memory used: 52095 MB.
Reading time: 261435 secs.
Reading: 10820000000
Memory used: 52153 MB.
Reading time: 261690 secs.
Reading: 10830000000
Memory used: 52209 MB.
Reading time: 261946 secs.
Reading: 10850000000
Memory used: 52323 MB.
Reading time: 262455 secs.
Reading: 10860000000
Memory used: 52382 MB.
Reading time: 262712 secs.
Reading: 10870000000
Memory used: 52454 MB.
Reading time: 262973 secs.
Reading: 10900000000
Memory used: 52732 MB.
Reading time: 263775 secs.
Reading: 10920000000
Memory used: 52906 MB.
Reading time: 264301 secs.
Reading: 10930000000
Memory used: 52980 MB.
Reading time: 264556 secs.
93/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001_val_1.fastq
94/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001_val_2.fastq
95/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001_val_1.fastq
96/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001_val_2.fastq
97/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R1_001_val_1.fastq
98/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R2_001_val_2.fastq
99/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R1_001_val_1.fastq
100/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R2_001_val_2.fastq
101/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R1_001_val_1.fastq
102/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R2_001_val_2.fastq
103/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001_val_1.fastq
104/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001_val_2.fastq
105/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001_val_1.fastq
106/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001_val_2.fastq
107/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001_val_1.fastq
108/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001_val_2.fastq
109/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001_val_1.fastq
110/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001_val_2.fastq
111/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001_val_1.fastq
112/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001_val_2.fastq
113/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001_val_1.fastq
114/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001_val_2.fastq
115/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001_val_1.fastq
Reading: 10950000000
Memory used: 53102 MB.
Reading time: 265085 secs.
Reading: 10960000000
Memory used: 53129 MB.
Reading time: 265365 secs.
Reading: 10970000000
Memory used: 53154 MB.
Reading time: 265642 secs.
Reading: 10980000000
Memory used: 53178 MB.
Reading time: 265917 secs.
Reading: 10990000000
Memory used: 53201 MB.
Reading time: 266190 secs.
Reading: 11030000000
Memory used: 53297 MB.
Reading time: 267288 secs.
Reading: 11050000000
Memory used: 53343 MB.
Reading time: 267838 secs.
Reading: 11070000000
Memory used: 53386 MB.
Reading time: 268387 secs.
Reading: 11080000000
Memory used: 53409 MB.
Reading time: 268662 secs.
Reading: 11100000000
Memory used: 53452 MB.
Reading time: 269212 secs.
Reading: 11110000000
Memory used: 53475 MB.
Reading time: 269490 secs.
Reading: 11120000000
Memory used: 53505 MB.
Reading time: 269767 secs.
Reading: 11140000000
Memory used: 53574 MB.
Reading time: 270326 secs.
Reading: 11160000000
Memory used: 53622 MB.
Reading time: 270881 secs.
Reading: 11170000000
Memory used: 53644 MB.
Reading time: 271158 secs.
Reading: 11180000000
Memory used: 53668 MB.
Reading time: 271435 secs.
Reading: 11200000000
Memory used: 53716 MB.
Reading time: 271990 secs.
Reading: 11210000000
Memory used: 53739 MB.
Reading time: 272268 secs.
Reading: 11230000000
Memory used: 53785 MB.
Reading time: 272823 secs.
116/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001_val_2.fastq
Reading: 11240000000
Memory used: 53842 MB.
Reading time: 273087 secs.
Reading: 11250000000
Memory used: 53902 MB.
Reading time: 273350 secs.
Reading: 11320000000
Memory used: 54319 MB.
Reading time: 275208 secs.
Reading: 11340000000
Memory used: 54438 MB.
Reading time: 275745 secs.
Reading: 11350000000
Memory used: 54499 MB.
Reading time: 276038 secs.
Reading: 11360000000
Memory used: 54558 MB.
Reading time: 276306 secs.
Reading: 11380000000
Memory used: 54695 MB.
Reading time: 276849 secs.
Reading: 11390000000
Memory used: 54764 MB.
Reading time: 277117 secs.
Reading: 11400000000
Memory used: 54839 MB.
Reading time: 277385 secs.
Reading: 11410000000
Memory used: 54913 MB.
Reading time: 277662 secs.
Reading: 11420000000
Memory used: 54988 MB.
Reading time: 277961 secs.
Reading: 11430000000
Memory used: 55055 MB.
Reading time: 278250 secs.
Reading: 11450000000
Memory used: 55179 MB.
Reading time: 278791 secs.
Reading: 11460000000
Memory used: 55242 MB.
Reading time: 279061 secs.
Reading: 11480000000
Memory used: 55373 MB.
Reading time: 279596 secs.
Reading: 11490000000
Memory used: 55439 MB.
Reading time: 279866 secs.
Reading: 11500000000
Memory used: 55509 MB.
Reading time: 280139 secs.
Reading: 11510000000
Memory used: 55588 MB.
Reading time: 280409 secs.
117/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001_val_1.fastq
Reading: 11520000000
Memory used: 55622 MB.
Reading time: 280692 secs.
Reading: 11530000000
Memory used: 55648 MB.
Reading time: 280979 secs.
Reading: 11550000000
Memory used: 55695 MB.
Reading time: 281554 secs.
Reading: 11600000000
Memory used: 55809 MB.
Reading time: 282990 secs.
Reading: 11610000000
Memory used: 55831 MB.
Reading time: 283277 secs.
Reading: 11620000000
Memory used: 55851 MB.
Reading time: 283565 secs.
Reading: 11640000000
Memory used: 55892 MB.
Reading time: 284140 secs.
Reading: 11680000000
Memory used: 55971 MB.
Reading time: 285293 secs.
Reading: 11700000000
Memory used: 56012 MB.
Reading time: 285871 secs.
Reading: 11720000000
Memory used: 56052 MB.
Reading time: 286450 secs.
Reading: 11740000000
Memory used: 56129 MB.
Reading time: 287045 secs.
Reading: 11750000000
Memory used: 56171 MB.
Reading time: 287341 secs.
Reading: 11760000000
Memory used: 56220 MB.
Reading time: 287636 secs.
Reading: 11770000000
Memory used: 56250 MB.
Reading time: 287928 secs.
Reading: 11790000000
Memory used: 56304 MB.
Reading time: 288512 secs.
118/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001_val_2.fastq
Reading: 11800000000
Memory used: 56337 MB.
Reading time: 288799 secs.
Reading: 11810000000
Memory used: 56400 MB.
Reading time: 289074 secs.
Reading: 11820000000
Memory used: 56464 MB.
Reading time: 289349 secs.
Reading: 11840000000
Memory used: 56588 MB.
Reading time: 289908 secs.
Reading: 11850000000
Memory used: 56650 MB.
Reading time: 290185 secs.
Reading: 11860000000
Memory used: 56712 MB.
Reading time: 290462 secs.
Reading: 11870000000
Memory used: 56776 MB.
Reading time: 290739 secs.
Reading: 11880000000
Memory used: 56845 MB.
Reading time: 291011 secs.
Reading: 11890000000
Memory used: 56911 MB.
Reading time: 291291 secs.
Reading: 11900000000
Memory used: 56976 MB.
Reading time: 291574 secs.
Reading: 11910000000
Memory used: 57042 MB.
Reading time: 291854 secs.
Reading: 11920000000
Memory used: 57107 MB.
Reading time: 292135 secs.
Reading: 11930000000
Memory used: 57172 MB.
Reading time: 292415 secs.
Reading: 11950000000
Memory used: 57297 MB.
Reading time: 292972 secs.
Reading: 11960000000
Memory used: 57358 MB.
Reading time: 293249 secs.
Reading: 11970000000
Memory used: 57422 MB.
Reading time: 293525 secs.
Reading: 11980000000
Memory used: 57483 MB.
Reading time: 293814 secs.
Reading: 11990000000
Memory used: 57544 MB.
Reading time: 294096 secs.
Reading: 12020000000
Memory used: 57736 MB.
Reading time: 294937 secs.
Reading: 12040000000
Memory used: 57889 MB.
Reading time: 295479 secs.
Reading: 12060000000
Memory used: 58088 MB.
Reading time: 296075 secs.
Reading: 12070000000
Memory used: 58180 MB.
Reading time: 296368 secs.
Reading: 12080000000
Memory used: 58261 MB.
Reading time: 296653 secs.
Total bases: 1444767415252
Total nodes in round 1: 1091570794
Reading time: 298370 secs.
Building the sparse k-mer graph, round: 2
1/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R1_001_val_1_val_1.fastq
2/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R2_001_val_2_val_2.fastq
3/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R1_001_val_1_val_1.fastq
4/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R2_001_val_2_val_2.fastq
5/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R1_001_val_1_val_1.fastq
6/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R2_001_val_2_val_2.fastq
7/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R1_001_val_1_val_1.fastq
8/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R2_001_val_2_val_2.fastq
9/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R1_001_val_1_val_1.fastq
10/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R2_001_val_2_val_2.fastq
11/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R1_001_val_1_val_1.fastq
12/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R2_001_val_2_val_2.fastq
13/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R1_001_val_1_val_1.fastq
14/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R2_001_val_2_val_2.fastq
15/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R1_001_val_1_val_1.fastq
16/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R2_001_val_2_val_2.fastq
17/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq
18/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq
19/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq
20/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq
21/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq
22/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq
23/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq
24/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq
25/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq
26/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq
27/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq
28/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq
29/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R1_001_val_1_val_1.fastq
30/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R2_001_val_2_val_2.fastq
31/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R1_001_val_1_val_1.fastq
32/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R2_001_val_2_val_2.fastq
33/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R1_001_val_1_val_1.fastq
34/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R2_001_val_2_val_2.fastq
35/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R1_001_val_1_val_1.fastq
36/118 files.
Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R2_001_val_2_val_2.fastq
37/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fastq
Reading: 10000000
Reading time: 298795 secs.
Reading: 20000000
Reading time: 299213 secs.
Reading: 30000000
Reading time: 299630 secs.
Reading: 40000000
Reading time: 300044 secs.
Reading: 50000000
Reading time: 300459 secs.
Reading: 60000000
Reading time: 300873 secs.
Reading: 70000000
Reading time: 301288 secs.
Reading: 80000000
Reading time: 301704 secs.
Reading: 90000000
Reading time: 302120 secs.
38/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2.fastq
Reading: 100000000
Reading time: 302541 secs.
Reading: 110000000
Reading time: 302959 secs.
Reading: 120000000
Reading time: 303376 secs.
Reading: 130000000
Reading time: 303793 secs.
Reading: 140000000
Reading time: 304210 secs.
Reading: 150000000
Reading time: 304626 secs.
Reading: 160000000
Reading time: 305042 secs.
Reading: 170000000
Reading time: 305459 secs.
Reading: 180000000
Reading time: 305876 secs.
39/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1.fastq
Reading: 190000000
Reading time: 306294 secs.
Reading: 200000000
Reading time: 306714 secs.
Reading: 210000000
Reading time: 307133 secs.
Reading: 220000000
Reading time: 307553 secs.
Reading: 230000000
Reading time: 307973 secs.
Reading: 240000000
Reading time: 308403 secs.
Reading: 250000000
Reading time: 308828 secs.
Reading: 260000000
Reading time: 309251 secs.
40/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fastq
Reading: 270000000
Reading time: 309670 secs.
Reading: 280000000
Reading time: 310089 secs.
Reading: 290000000
Reading time: 310510 secs.
Reading: 300000000
Reading time: 310931 secs.
Reading: 310000000
Reading time: 311352 secs.
Reading: 320000000
Reading time: 311771 secs.
Reading: 330000000
Reading time: 312191 secs.
41/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fastq
Reading: 340000000
Reading time: 312611 secs.
Reading: 350000000
Reading time: 313031 secs.
Reading: 360000000
Reading time: 313450 secs.
Reading: 370000000
Reading time: 313870 secs.
Reading: 380000000
Reading time: 314295 secs.
Reading: 390000000
Reading time: 314714 secs.
Reading: 400000000
Reading time: 315130 secs.
Reading: 410000000
Reading time: 315545 secs.
42/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2.fastq
Reading: 420000000
Reading time: 315959 secs.
Reading: 430000000
Reading time: 316373 secs.
Reading: 440000000
Reading time: 316787 secs.
Reading: 450000000
Reading time: 317202 secs.
Reading: 460000000
Reading time: 317614 secs.
Reading: 470000000
Reading time: 318026 secs.
Reading: 480000000
Reading time: 318436 secs.
43/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_1.fastq
44/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_2.fastq
45/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1.fastq
46/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2.fastq
47/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1.fastq
48/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2.fastq
49/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1.fastq
50/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2.fastq
51/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1.fastq
52/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_2.fastq
53/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1.fastq
54/118 files.
Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2.fastq
55/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R1_001_val_1.fastq
Reading: 1200000000
Reading time: 319681 secs.
Reading: 1210000000
Reading time: 319981 secs.
Reading: 1220000000
Reading time: 320290 secs.
Reading: 1230000000
Reading time: 320593 secs.
Reading: 1250000000
Reading time: 321197 secs.
Reading: 1260000000
Reading time: 321496 secs.
Reading: 1280000000
Reading time: 322093 secs.
Reading: 1340000000
Reading time: 323870 secs.
Reading: 1350000000
Reading time: 324164 secs.
Reading: 1360000000
Reading time: 324456 secs.
Reading: 1370000000
Reading time: 324747 secs.
Reading: 1380000000
Reading time: 325036 secs.
Reading: 1390000000
Reading time: 325326 secs.
Reading: 1400000000
Reading time: 325617 secs.
Reading: 1420000000
Reading time: 326198 secs.
Reading: 1430000000
Reading time: 326488 secs.
Reading: 1440000000
Reading time: 326778 secs.
Reading: 1450000000
Reading time: 327065 secs.
Reading: 1470000000
Reading time: 327642 secs.
Reading: 1480000000
Reading time: 327928 secs.
56/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fastq
Reading: 1490000000
Reading time: 328199 secs.
Reading: 1500000000
Reading time: 328454 secs.
Reading: 1510000000
Reading time: 328710 secs.
Reading: 1550000000
Reading time: 329717 secs.
Reading: 1560000000
Reading time: 329968 secs.
Reading: 1570000000
Reading time: 330221 secs.
Reading: 1580000000
Reading time: 330478 secs.
Reading: 1590000000
Reading time: 330739 secs.
Reading: 1600000000
Reading time: 330995 secs.
Reading: 1610000000
Reading time: 331256 secs.
Reading: 1620000000
Reading time: 331513 secs.
Reading: 1630000000
Reading time: 331765 secs.
Reading: 1640000000
Reading time: 332017 secs.
Reading: 1670000000
Reading time: 332721 secs.
Reading: 1680000000
Reading time: 332968 secs.
Reading: 1690000000
Reading time: 333217 secs.
Reading: 1700000000
Reading time: 333460 secs.
Reading: 1730000000
Reading time: 334207 secs.
Reading: 1750000000
Reading time: 334687 secs.
Reading: 1760000000
Reading time: 334935 secs.
57/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R1_001_val_1.fastq
Reading: 1780000000
Reading time: 335433 secs.
Reading: 1800000000
Reading time: 335972 secs.
Reading: 1810000000
Reading time: 336243 secs.
Reading: 1830000000
Reading time: 336782 secs.
Reading: 1850000000
Reading time: 337318 secs.
Reading: 1860000000
Reading time: 337584 secs.
Reading: 1870000000
Reading time: 337851 secs.
Reading: 1880000000
Reading time: 338117 secs.
Reading: 1890000000
Reading time: 338385 secs.
Reading: 1900000000
Reading time: 338651 secs.
Reading: 1910000000
Reading time: 338915 secs.
Reading: 1920000000
Reading time: 339180 secs.
Reading: 1930000000
Reading time: 339444 secs.
Reading: 1940000000
Reading time: 339709 secs.
Reading: 1970000000
Reading time: 340508 secs.
Reading: 1980000000
Reading time: 340780 secs.
Reading: 1990000000
Reading time: 341044 secs.
Reading: 2000000000
Reading time: 341309 secs.
Reading: 2010000000
Reading time: 341571 secs.
Reading: 2020000000
Reading time: 341832 secs.
Reading: 2030000000
Reading time: 342093 secs.
Reading: 2040000000
Reading time: 342354 secs.
Reading: 2050000000
Reading time: 342614 secs.
Reading: 2060000000
Reading time: 342874 secs.
Reading: 2070000000
Reading time: 343133 secs.
58/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R2_001_val_2.fastq
Reading: 2080000000
Reading time: 343379 secs.
Reading: 2110000000
Reading time: 344079 secs.
Reading: 2130000000
Reading time: 344548 secs.
Reading: 2140000000
Reading time: 344776 secs.
Reading: 2160000000
Reading time: 345234 secs.
Reading: 2170000000
Reading time: 345465 secs.
Reading: 2230000000
Reading time: 346859 secs.
Reading: 2240000000
Reading time: 347094 secs.
Reading: 2260000000
Reading time: 347556 secs.
Reading: 2270000000
Reading time: 347765 secs.
Reading: 2280000000
Reading time: 347996 secs.
Reading: 2290000000
Reading time: 348225 secs.
Reading: 2310000000
Reading time: 348684 secs.
Reading: 2360000000
Reading time: 349793 secs.
Reading: 2370000000
Reading time: 350019 secs.
59/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001_val_1.fastq
60/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001_val_2.fastq
61/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001_val_1.fastq
62/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001_val_2.fastq
63/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001_val_1.fastq
Reading: 2380000000
Reading time: 350261 secs.
Reading: 2390000000
Reading time: 350511 secs.
Reading: 2400000000
Reading time: 350763 secs.
Reading: 2410000000
Reading time: 351015 secs.
Reading: 2430000000
Reading time: 351519 secs.
Reading: 2440000000
Reading time: 351770 secs.
Reading: 2450000000
Reading time: 352020 secs.
Reading: 2460000000
Reading time: 352270 secs.
Reading: 2470000000
Reading time: 352520 secs.
Reading: 2480000000
Reading time: 352770 secs.
Reading: 2500000000
Reading time: 353272 secs.
Reading: 2530000000
Reading time: 354021 secs.
Reading: 2540000000
Reading time: 354269 secs.
Reading: 2550000000
Reading time: 354518 secs.
Reading: 2560000000
Reading time: 354767 secs.
Reading: 2570000000
Reading time: 354958 secs.
Reading: 2580000000
Reading time: 355208 secs.
Reading: 2590000000
Reading time: 355458 secs.
Reading: 2610000000
Reading time: 355954 secs.
Reading: 2620000000
Reading time: 356204 secs.
Reading: 2630000000
Reading time: 356453 secs.
Reading: 2640000000
Reading time: 356702 secs.
Reading: 2650000000
Reading time: 356952 secs.
64/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001_val_2.fastq
Reading: 2660000000
Reading time: 357196 secs.
Reading: 2680000000
Reading time: 357646 secs.
Reading: 2690000000
Reading time: 357874 secs.
Reading: 2700000000
Reading time: 358102 secs.
Reading: 2710000000
Reading time: 358327 secs.
Reading: 2720000000
Reading time: 358549 secs.
Reading: 2740000000
Reading time: 358995 secs.
Reading: 2750000000
Reading time: 359219 secs.
Reading: 2780000000
Reading time: 359909 secs.
Reading: 2790000000
Reading time: 360135 secs.
Reading: 2800000000
Reading time: 360362 secs.
Reading: 2810000000
Reading time: 360586 secs.
Reading: 2820000000
Reading time: 360810 secs.
Reading: 2830000000
Reading time: 361034 secs.
Reading: 2840000000
Reading time: 361260 secs.
Reading: 2850000000
Reading time: 361485 secs.
Reading: 2860000000
Reading time: 361709 secs.
Reading: 2870000000
Reading time: 361931 secs.
Reading: 2880000000
Reading time: 362157 secs.
Reading: 2910000000
Reading time: 362838 secs.
Reading: 2920000000
Reading time: 363064 secs.
Reading: 2930000000
Reading time: 363290 secs.
Reading: 2940000000
Reading time: 363513 secs.
65/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001_val_1.fastq
Reading: 2950000000
Reading time: 363754 secs.
Reading: 2960000000
Reading time: 364001 secs.
Reading: 2970000000
Reading time: 364249 secs.
Reading: 2980000000
Reading time: 364497 secs.
Reading: 2990000000
Reading time: 364745 secs.
Reading: 3000000000
Reading time: 364994 secs.
Reading: 3010000000
Reading time: 365243 secs.
Reading: 3020000000
Reading time: 365490 secs.
Reading: 3030000000
Reading time: 365737 secs.
Reading: 3040000000
Reading time: 365984 secs.
Reading: 3050000000
Reading time: 366232 secs.
Reading: 3060000000
Reading time: 366480 secs.
Reading: 3070000000
Reading time: 366729 secs.
Reading: 3080000000
Reading time: 366977 secs.
Reading: 3090000000
Reading time: 367225 secs.
Reading: 3100000000
Reading time: 367472 secs.
Reading: 3110000000
Reading time: 367720 secs.
Reading: 3120000000
Reading time: 367967 secs.
Reading: 3140000000
Reading time: 368464 secs.
Reading: 3150000000
Reading time: 368712 secs.
Reading: 3160000000
Reading time: 368961 secs.
Reading: 3170000000
Reading time: 369208 secs.
Reading: 3180000000
Reading time: 369455 secs.
Reading: 3190000000
Reading time: 369703 secs.
Reading: 3210000000
Reading time: 370200 secs.
Reading: 3220000000
Reading time: 370448 secs.
Reading: 3230000000
Reading time: 370697 secs.
66/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fastq
Reading: 3240000000
Reading time: 370920 secs.
Reading: 3250000000
Reading time: 371143 secs.
Reading: 3260000000
Reading time: 371368 secs.
Reading: 3280000000
Reading time: 371819 secs.
Reading: 3300000000
Reading time: 372266 secs.
Reading: 3310000000
Reading time: 372491 secs.
Reading: 3320000000
Reading time: 372717 secs.
Reading: 3330000000
Reading time: 372945 secs.
Reading: 3340000000
Reading time: 373176 secs.
Reading: 3350000000
Reading time: 373406 secs.
Reading: 3360000000
Reading time: 373634 secs.
Reading: 3380000000
Reading time: 374105 secs.
Reading: 3410000000
Reading time: 374786 secs.
Reading: 3430000000
Reading time: 375233 secs.
Reading: 3440000000
Reading time: 375453 secs.
Reading: 3460000000
Reading time: 375905 secs.
Reading: 3470000000
Reading time: 376131 secs.
Reading: 3500000000
Reading time: 376811 secs.
Reading: 3510000000
Reading time: 377033 secs.
67/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001_val_1.fastq
68/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001_val_2.fastq
69/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001_val_1.fastq
70/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fastq
71/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001_val_1.fastq
72/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001_val_2.fastq
73/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001_val_1.fastq
Reading: 3520000000
Reading time: 377256 secs.
74/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001_val_2.fastq
75/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R1_001_val_1.fastq
76/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R2_001_val_2.fastq
77/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R1_001_val_1.fastq
78/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fastq
79/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R1_001_val_1.fastq
80/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R2_001_val_2.fastq
81/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001_val_1.fastq
82/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001_val_2.fastq
83/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001_val_1.fastq
84/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001_val_2.fastq
85/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001_val_1.fastq
86/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fastq
87/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fastq
88/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001_val_2.fastq
89/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001_val_1.fastq
Reading: 3530000000
Reading time: 377475 secs.
Reading: 3540000000
Reading time: 377692 secs.
Reading: 3570000000
Reading time: 378342 secs.
Reading: 3580000000
Reading time: 378560 secs.
Reading: 3590000000
Reading time: 378777 secs.
Reading: 3610000000
Reading time: 379209 secs.
Reading: 3620000000
Reading time: 379426 secs.
Reading: 3630000000
Reading time: 379642 secs.
Reading: 3640000000
Reading time: 379859 secs.
Reading: 3660000000
Reading time: 380294 secs.
Reading: 3670000000
Reading time: 380511 secs.
Reading: 3680000000
Reading time: 380728 secs.
Reading: 3690000000
Reading time: 380945 secs.
Reading: 3710000000
Reading time: 381379 secs.
Reading: 3720000000
Reading time: 381596 secs.
Reading: 3730000000
Reading time: 381813 secs.
Reading: 3740000000
Reading time: 382031 secs.
Reading: 3750000000
Reading time: 382248 secs.
90/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001_val_2.fastq
Reading: 3770000000
Reading time: 382710 secs.
Reading: 3800000000
Reading time: 383306 secs.
Reading: 3810000000
Reading time: 383502 secs.
Reading: 3820000000
Reading time: 383698 secs.
Reading: 3830000000
Reading time: 383894 secs.
Reading: 3880000000
Reading time: 384884 secs.
Reading: 3890000000
Reading time: 385083 secs.
Reading: 3900000000
Reading time: 385282 secs.
Reading: 3920000000
Reading time: 385681 secs.
Reading: 3930000000
Reading time: 385878 secs.
Reading: 3950000000
Reading time: 386273 secs.
Reading: 3970000000
Reading time: 386671 secs.
Reading: 3980000000
Reading time: 386870 secs.
91/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001_val_1.fastq
Reading: 4010000000
Reading time: 387491 secs.
Reading: 4020000000
Reading time: 387708 secs.
Reading: 4030000000
Reading time: 387925 secs.
Reading: 4040000000
Reading time: 388142 secs.
Reading: 4060000000
Reading time: 388577 secs.
Reading: 4080000000
Reading time: 389013 secs.
Reading: 4090000000
Reading time: 389231 secs.
Reading: 4130000000
Reading time: 390100 secs.
Reading: 4140000000
Reading time: 390318 secs.
Reading: 4150000000
Reading time: 390536 secs.
Reading: 4160000000
Reading time: 390754 secs.
Reading: 4170000000
Reading time: 390972 secs.
Reading: 4200000000
Reading time: 391585 secs.
Reading: 4210000000
Reading time: 391802 secs.
Reading: 4220000000
Reading time: 392020 secs.
Reading: 4230000000
Reading time: 392238 secs.
92/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001_val_2.fastq
Reading: 4240000000
Reading time: 392440 secs.
Reading: 4250000000
Reading time: 392636 secs.
Reading: 4260000000
Reading time: 392833 secs.
Reading: 4270000000
Reading time: 393031 secs.
Reading: 4280000000
Reading time: 393243 secs.
Reading: 4310000000
Reading time: 393839 secs.
Reading: 4330000000
Reading time: 394240 secs.
Reading: 4350000000
Reading time: 394639 secs.
Reading: 4360000000
Reading time: 394837 secs.
Reading: 4370000000
Reading time: 395036 secs.
Reading: 4380000000
Reading time: 395237 secs.
Reading: 4390000000
Reading time: 395436 secs.
Reading: 4410000000
Reading time: 395833 secs.
Reading: 4420000000
Reading time: 396030 secs.
Reading: 4430000000
Reading time: 396227 secs.
Reading: 4440000000
Reading time: 396424 secs.
Reading: 4450000000
Reading time: 396622 secs.
93/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001_val_1.fastq
94/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001_val_2.fastq
95/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001_val_1.fastq
96/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001_val_2.fastq
97/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R1_001_val_1.fastq
98/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R2_001_val_2.fastq
99/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R1_001_val_1.fastq
100/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R2_001_val_2.fastq
101/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R1_001_val_1.fastq
102/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R2_001_val_2.fastq
103/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001_val_1.fastq
104/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001_val_2.fastq
105/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001_val_1.fastq
106/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001_val_2.fastq
107/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001_val_1.fastq
108/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001_val_2.fastq
109/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001_val_1.fastq
110/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001_val_2.fastq
111/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001_val_1.fastq
112/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001_val_2.fastq
113/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001_val_1.fastq
114/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001_val_2.fastq
115/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001_val_1.fastq
Reading: 4490000000
Reading time: 397487 secs.
Reading: 4500000000
Reading time: 397722 secs.
Reading: 4510000000
Reading time: 397957 secs.
Reading: 4520000000
Reading time: 398192 secs.
Reading: 4530000000
Reading time: 398427 secs.
Reading: 4540000000
Reading time: 398661 secs.
Reading: 4550000000
Reading time: 398895 secs.
Reading: 4560000000
Reading time: 399130 secs.
Reading: 4580000000
Reading time: 399600 secs.
Reading: 4600000000
Reading time: 400069 secs.
Reading: 4620000000
Reading time: 400534 secs.
Reading: 4630000000
Reading time: 400776 secs.
Reading: 4640000000
Reading time: 401022 secs.
Reading: 4650000000
Reading time: 401257 secs.
Reading: 4660000000
Reading time: 401491 secs.
Reading: 4680000000
Reading time: 401958 secs.
Reading: 4690000000
Reading time: 402191 secs.
Reading: 4700000000
Reading time: 402424 secs.
Reading: 4710000000
Reading time: 402657 secs.
Reading: 4720000000
Reading time: 402889 secs.
Reading: 4730000000
Reading time: 403122 secs.
Reading: 4740000000
Reading time: 403355 secs.
Reading: 4750000000
Reading time: 403588 secs.
116/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001_val_2.fastq
Reading: 4760000000
Reading time: 403809 secs.
Reading: 4780000000
Reading time: 404232 secs.
Reading: 4790000000
Reading time: 404447 secs.
Reading: 4820000000
Reading time: 405086 secs.
Reading: 4830000000
Reading time: 405296 secs.
Reading: 4840000000
Reading time: 405508 secs.
Reading: 4850000000
Reading time: 405721 secs.
Reading: 4860000000
Reading time: 405935 secs.
Reading: 4870000000
Reading time: 406150 secs.
Reading: 4890000000
Reading time: 406573 secs.
Reading: 4900000000
Reading time: 406787 secs.
Reading: 4910000000
Reading time: 407000 secs.
Reading: 4920000000
Reading time: 407204 secs.
Reading: 4930000000
Reading time: 407413 secs.
Reading: 4940000000
Reading time: 407627 secs.
Reading: 4950000000
Reading time: 407841 secs.
Reading: 4960000000
Reading time: 408053 secs.
Reading: 4970000000
Reading time: 408265 secs.
Reading: 4980000000
Reading time: 408480 secs.
Reading: 5000000000
Reading time: 408894 secs.
Reading: 5010000000
Reading time: 409107 secs.
Reading: 5020000000
Reading time: 409318 secs.
Reading: 5030000000
Reading time: 409529 secs.
117/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001_val_1.fastq
Reading: 5060000000
Reading time: 410211 secs.
Reading: 5070000000
Reading time: 410445 secs.
Reading: 5080000000
Reading time: 410679 secs.
Reading: 5100000000
Reading time: 411144 secs.
Reading: 5110000000
Reading time: 411377 secs.
Reading: 5120000000
Reading time: 411609 secs.
Reading: 5130000000
Reading time: 411843 secs.
Reading: 5140000000
Reading time: 412076 secs.
Reading: 5160000000
Reading time: 412542 secs.
Reading: 5170000000
Reading time: 412776 secs.
Reading: 5200000000
Reading time: 413478 secs.
Reading: 5210000000
Reading time: 413712 secs.
Reading: 5240000000
Reading time: 414414 secs.
Reading: 5260000000
Reading time: 414881 secs.
Reading: 5270000000
Reading time: 415114 secs.
Reading: 5280000000
Reading time: 415347 secs.
Reading: 5300000000
Reading time: 415814 secs.
Reading: 5310000000
Reading time: 416047 secs.
Reading: 5320000000
Reading time: 416281 secs.
118/118 files.
Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001_val_2.fastq
Reading: 5330000000
Reading time: 416496 secs.
Reading: 5340000000
Reading time: 416706 secs.
Reading: 5350000000
Reading time: 416919 secs.
Reading: 5360000000
Reading time: 417133 secs.
Reading: 5370000000
Reading time: 417347 secs.
Reading: 5380000000
Reading time: 417559 secs.
Reading: 5390000000
Reading time: 417771 secs.
Reading: 5430000000
Reading time: 418620 secs.
slurmstepd: error: *** JOB 156637 ON n2205 CANCELLED AT 2018-04-10T09:12:07 ***