[2018-05-07 07:28:29,702] multiqc [DEBUG ] No MultiQC config found: /home/sam/.local/lib/python2.7/site-packages/multiqc-1.6.dev0-py2.7.egg/multiqc_config.yaml [2018-05-07 07:28:29,702] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2018-05-07 07:28:29,702] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-05-07 07:28:29,702] multiqc [DEBUG ] Command used: /home/sam/.local/bin/multiqc /home/sam/analyses/20180503_trimgalore/20180503_trim_fastqc [2018-05-07 07:28:30,197] multiqc [DEBUG ] Latest MultiQC version is v1.5 [2018-05-07 07:28:30,197] multiqc [INFO ] This is MultiQC v1.6.dev0 [2018-05-07 07:28:30,197] multiqc [DEBUG ] Command : /home/sam/.local/bin/multiqc /home/sam/analyses/20180503_trimgalore/20180503_trim_fastqc [2018-05-07 07:28:30,197] multiqc [DEBUG ] Working dir : /home/sam/data [2018-05-07 07:28:30,197] multiqc [INFO ] Template : default [2018-05-07 07:28:30,197] multiqc [INFO ] Searching '/home/sam/analyses/20180503_trimgalore/20180503_trim_fastqc' [2018-05-07 07:28:30,198] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, dedup, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastqc, clusterflow, bcl2fastq, interop [2018-05-07 07:28:30,198] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp6kK1z1 [2018-05-07 07:28:30,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_1_s456_trimmed_fastqc.html [2018-05-07 07:28:30,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_15_s456_trimmed_fastqc.html [2018-05-07 07:28:30,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_TTAGGC_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_12_s456_trimmed_fastqc.html [2018-05-07 07:28:30,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_14_s456_trimmed_fastqc.html [2018-05-07 07:28:30,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_3_s456_trimmed_fastqc.html [2018-05-07 07:28:30,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_ATCACG_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_2_s456_trimmed_fastqc.html [2018-05-07 07:28:30,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_ACTTGA_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_4_s456_trimmed_fastqc.html [2018-05-07 07:28:30,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_5_s456_trimmed_fastqc.html [2018-05-07 07:28:30,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_16_s456_trimmed_fastqc.html [2018-05-07 07:28:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_9_s456_trimmed_fastqc.html [2018-05-07 07:28:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_CGATGT_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_17_s456_trimmed_fastqc.html [2018-05-07 07:28:30,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_CAGATC_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_8_s456_trimmed_fastqc.html [2018-05-07 07:28:30,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_ACAGTG_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_10_s456_trimmed_fastqc.html [2018-05-07 07:28:30,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_18_s456_trimmed_fastqc.html [2018-05-07 07:28:30,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_GCCAAT_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_13_s456_trimmed_fastqc.html [2018-05-07 07:28:30,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_7_s456_trimmed_fastqc.html [2018-05-07 07:28:30,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_TGACCA_L001_R1_001_trimmed_fastqc.html [2018-05-07 07:28:30,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_11_s456_trimmed_fastqc.html [2018-05-07 07:28:30,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr1394_6_s456_trimmed_fastqc.html [2018-05-07 07:28:30,498] multiqc [DEBUG ] No samples found: custom_content [2018-05-07 07:28:30,502] multiqc [DEBUG ] No samples found: conpair [2018-05-07 07:28:30,506] multiqc [DEBUG ] No samples found: peddy [2018-05-07 07:28:30,511] multiqc [DEBUG ] No samples found: methylQA [2018-05-07 07:28:30,516] multiqc [DEBUG ] No samples found: qualimap [2018-05-07 07:28:30,520] multiqc [DEBUG ] No samples found: preseq [2018-05-07 07:28:30,524] multiqc [DEBUG ] No samples found: quast [2018-05-07 07:28:30,528] multiqc [DEBUG ] No samples found: qorts [2018-05-07 07:28:30,532] multiqc [DEBUG ] No samples found: rna_seqc [2018-05-07 07:28:30,536] multiqc [DEBUG ] No samples found: rsem [2018-05-07 07:28:30,541] multiqc [DEBUG ] No samples found: rseqc [2018-05-07 07:28:30,545] multiqc [DEBUG ] No samples found: busco [2018-05-07 07:28:30,549] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-05-07 07:28:30,553] multiqc [DEBUG ] No samples found: disambiguate [2018-05-07 07:28:30,557] multiqc [DEBUG ] No samples found: supernova [2018-05-07 07:28:30,562] multiqc [DEBUG ] No samples found: deeptools [2018-05-07 07:28:30,566] multiqc [DEBUG ] No samples found: sargasso [2018-05-07 07:28:30,570] multiqc [DEBUG ] No samples found: verifybamid [2018-05-07 07:28:30,575] multiqc [DEBUG ] No samples found: homer [2018-05-07 07:28:30,579] multiqc [DEBUG ] No samples found: macs2 [2018-05-07 07:28:30,583] multiqc [DEBUG ] No samples found: theta2 [2018-05-07 07:28:30,587] multiqc [DEBUG ] No samples found: snpeff [2018-05-07 07:28:30,591] multiqc [DEBUG ] No samples found: gatk [2018-05-07 07:28:30,595] multiqc [DEBUG ] No samples found: htseq [2018-05-07 07:28:30,599] multiqc [DEBUG ] No samples found: bcftools [2018-05-07 07:28:30,603] multiqc [DEBUG ] No samples found: featureCounts [2018-05-07 07:28:30,607] multiqc [DEBUG ] No samples found: dedup [2018-05-07 07:28:30,613] multiqc [DEBUG ] No samples found: picard [2018-05-07 07:28:30,617] multiqc [DEBUG ] No samples found: prokka [2018-05-07 07:28:30,621] multiqc [DEBUG ] No samples found: samblaster [2018-05-07 07:28:30,625] multiqc [DEBUG ] No samples found: samtools [2018-05-07 07:28:30,629] multiqc [DEBUG ] No samples found: bamtools [2018-05-07 07:28:30,633] multiqc [DEBUG ] No samples found: jellyfish [2018-05-07 07:28:30,637] multiqc [DEBUG ] No samples found: vcftools [2018-05-07 07:28:30,643] multiqc [DEBUG ] No samples found: bbmap [2018-05-07 07:28:30,647] multiqc [DEBUG ] No samples found: bismark [2018-05-07 07:28:30,651] multiqc [DEBUG ] No samples found: hicexplorer [2018-05-07 07:28:30,655] multiqc [DEBUG ] No samples found: hicup [2018-05-07 07:28:30,659] multiqc [DEBUG ] No samples found: salmon [2018-05-07 07:28:30,663] multiqc [DEBUG ] No samples found: kallisto [2018-05-07 07:28:30,667] multiqc [DEBUG ] No samples found: slamdunk [2018-05-07 07:28:30,671] multiqc [DEBUG ] No samples found: star [2018-05-07 07:28:30,675] multiqc [DEBUG ] No samples found: hisat2 [2018-05-07 07:28:30,679] multiqc [DEBUG ] No samples found: tophat [2018-05-07 07:28:30,683] multiqc [DEBUG ] No samples found: bowtie2 [2018-05-07 07:28:30,687] multiqc [DEBUG ] No samples found: bowtie1 [2018-05-07 07:28:30,691] multiqc [DEBUG ] No samples found: leehom [2018-05-07 07:28:30,695] multiqc [DEBUG ] No samples found: adapterRemoval [2018-05-07 07:28:30,699] multiqc [DEBUG ] No samples found: clipandmerge [2018-05-07 07:28:30,703] multiqc [DEBUG ] No samples found: cutadapt [2018-05-07 07:28:30,707] multiqc [DEBUG ] No samples found: flexbar [2018-05-07 07:28:30,711] multiqc [DEBUG ] No samples found: trimmomatic [2018-05-07 07:28:30,715] multiqc [DEBUG ] No samples found: skewer [2018-05-07 07:28:30,719] multiqc [DEBUG ] No samples found: sortmerna [2018-05-07 07:28:30,723] multiqc [DEBUG ] No samples found: biobloomtools [2018-05-07 07:28:30,727] multiqc [DEBUG ] No samples found: fastq_screen [2018-05-07 07:28:30,731] multiqc [DEBUG ] No samples found: afterqc [2018-05-07 07:28:32,377] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2018-05-07 07:28:32,726] multiqc [DEBUG ] No samples found: clusterflow [2018-05-07 07:28:32,730] multiqc [DEBUG ] No samples found: bcl2fastq [2018-05-07 07:28:32,735] multiqc [DEBUG ] No samples found: interop [2018-05-07 07:28:32,785] multiqc [INFO ] Compressing plot data [2018-05-07 07:28:35,181] multiqc [INFO ] Report : multiqc_report.html [2018-05-07 07:28:35,181] multiqc [INFO ] Data : multiqc_data [2018-05-07 07:28:35,181] multiqc [DEBUG ] Moving data file from '/tmp/tmp6kK1z1/multiqc_data/multiqc_sources.txt' to '/home/sam/data/multiqc_data' [2018-05-07 07:28:35,181] multiqc [DEBUG ] Moving data file from '/tmp/tmp6kK1z1/multiqc_data/multiqc_data.json' to '/home/sam/data/multiqc_data' [2018-05-07 07:28:35,181] multiqc [DEBUG ] Moving data file from '/tmp/tmp6kK1z1/multiqc_data/multiqc_general_stats.txt' to '/home/sam/data/multiqc_data' [2018-05-07 07:28:35,181] multiqc [DEBUG ] Moving data file from '/tmp/tmp6kK1z1/multiqc_data/multiqc_fastqc.txt' to '/home/sam/data/multiqc_data' [2018-05-07 07:28:35,377] multiqc [INFO ] MultiQC complete