/Athaliana/20180503_oly_methylseq_trimgalore


Directory contains O.lurida BS-seq reads (MBD and whole genome) trimmed with TrimGalore!.

Per recommendations of downstream application, Bismark, 10bp from 5' and 3' ends were trimmed.

All commands were run in a Jupyter Notebook. See the notebook entry (linked below) for full info and link to Jupyter Notebook.

Corresponding FastQC/MultiQC reports can be found in the following subdirectory:

/Athaliana/20180503_oly_methylseq_trimgalore/20180503_trim_fastqc



Other files:

- checksums.md5: Checksums for all *fq.gz files. Created using md5sum on Ubuntu.

- trim_galore_stderr.log: Standard error log written by TrimGalore!

- *trimmed.fq.gz - Resulting trimmed FastQ files.

- *trimming_report.txt: The individual trimming reports created by TrimGalore! for each *fq.gz file.

Notebook entry:

http://onsnetwork.org/kubu4/2018/05/08/bs-seq-mapping-olympia-oyster-bisulfite-sequencing-trimgalore-fastqc-bismark/