Bowtie seems to be working fine (tested command '/home/shared/bowtie2-2.3.4.1-linux-x86_64/bowtie2 --version' [2.3.4]) Output format is BAM (default) Alignments will be written out in BAM format. Samtools found here: '/home/shared/bin/samtools' Reference genome folder provided is /home/sam/data/oly_methylseq/oly_genome/ (absolute path is '/home/sam/data/oly_methylseq/oly_genome/)' Processing sequences up to read no. 1000000 from the input file Attention: using more than 4 cores per alignment thread has been reported to have diminishing returns. If possible try to limit -p to a value of 4 Input files to be analysed (in current folder '/home/sam/analyses/20180507_oly_methylseq_bismark'): /home/sam/analyses/20180503_oly_methylseq_trimgalore/1_ATCACG_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/2_CGATGT_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/3_TTAGGC_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/4_TGACCA_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/5_ACAGTG_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/6_GCCAAT_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/7_CAGATC_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/8_ACTTGA_L001_R1_001_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_10_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_11_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_12_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_13_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_14_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_15_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_16_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_17_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_18_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_1_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_2_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_3_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_4_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_5_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_6_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_7_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_8_s456_trimmed.fq.gz /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_9_s456_trimmed.fq.gz Library was specified to be not strand-specific (non-directional), therefore alignments to all four possible bisulfite strands (OT, CTOT, OB and CTOB) will be reported Setting parallelization to single-threaded (default) Current working directory is: /home/sam/analyses/20180507_oly_methylseq_bismark Now reading in and storing sequence information of the genome specified in: /home/sam/data/oly_methylseq/oly_genome/ Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/1_ATCACG_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 1_ATCACG_L001_R1_001_trimmed.fq.gz to 1_ATCACG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 1_ATCACG_L001_R1_001_trimmed.fq.gz to 1_ATCACG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 1_ATCACG_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 1_ATCACG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 1_ATCACG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 1_ATCACG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1346:2178_1:N:0:ATCACG 0 Contig73175_CT_converted 4546 1 31M * 0 0 GATGTTGATTGAATGTGGTTTTGTGGTTGTG HDHIIIJIJJJGEHDFJIGEHGEGGIFHIBG AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from 1_ATCACG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1346:2178_1:N:0:ATCACG 16 Contig81388_GA_converted 2016 1 31M * 0 0 CACAACCACAAAACCACATTCAATCAACATC GBIHFIGGEGHEGIJFDHEGJJJIJIIIHDH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from 1_ATCACG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1346:2178_1:N:0:ATCACG 4 * 0 0 * * 0 0 AATATTAATTAAATATAATTTTATAATTATA HDHIIIJIJJJGEHDFJIGEHGEGGIFHIBG YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 1_ATCACG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1346:2178_1:N:0:ATCACG 4 * 0 0 * * 0 0 AATATTAATTAAATATAATTTTATAATTATA HDHIIIJIJJJGEHDFJIGEHGEGGIFHIBG YT:Z:UU >>> Writing bisulfite mapping results to 1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/1_ATCACG_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16842:3702_1:N:0:ATCACG Contig238624 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9464:5753_1:N:0:ATCACG Contig521501 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2360:7327_1:N:0:ATCACG Contig559109 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9385:12762_1:N:0:ATCACG Contig427971 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2900:13143_1:N:0:ATCACG Contig36335 7478 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17640:16956_1:N:0:ATCACG Contig156638 13242 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4207:18353_1:N:0:ATCACG Contig29443 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6866:19581_1:N:0:ATCACG Contig256351 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17651:20343_1:N:0:ATCACG Contig1548 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18624:20317_1:N:0:ATCACG Contig641140 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9561:24472_1:N:0:ATCACG Contig152604 1014 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9248:25311_1:N:0:ATCACG Contig22197 6040 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1942:26850_1:N:0:ATCACG Contig515508 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7080:27936_1:N:0:ATCACG Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12831:28678_1:N:0:ATCACG Contig16971 7947 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19112:30628_1:N:0:ATCACG Contig215022 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4113:30790_1:N:0:ATCACG Contig184770 462 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19140:31855_1:N:0:ATCACG Contig38329 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3662:33398_1:N:0:ATCACG Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1487:34989_1:N:0:ATCACG Contig308188 142 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20861:36365_1:N:0:ATCACG Contig118590 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4610:36503_1:N:0:ATCACG Contig207148 777 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11094:37612_1:N:0:ATCACG Contig23729 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13209:41472_1:N:0:ATCACG Contig366066 184 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17046:41773_1:N:0:ATCACG Contig402473 209 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2963:44425_1:N:0:ATCACG Contig48256 1599 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16825:46257_1:N:0:ATCACG Contig7921 5269 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2733:47109_1:N:0:ATCACG Contig11480 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10249:48503_1:N:0:ATCACG Contig170353 811 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16419:49761_1:N:0:ATCACG Contig579553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8209:51893_1:N:0:ATCACG Contig304780 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15180:52640_1:N:0:ATCACG Contig111391 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3619:52755_1:N:0:ATCACG Contig459870 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1755:58273_1:N:0:ATCACG Contig512407 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20874:61661_1:N:0:ATCACG Contig270296 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12721:63483_1:N:0:ATCACG Contig448469 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17895:70430_1:N:0:ATCACG Contig241902 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7745:74455_1:N:0:ATCACG Contig56191 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11301:75971_1:N:0:ATCACG Contig484009 293 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9994:79415_1:N:0:ATCACG Contig253321 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15009:79334_1:N:0:ATCACG Contig289669 367 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2108:83170_1:N:0:ATCACG Contig568002 128 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7171:83222_1:N:0:ATCACG Contig488045 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19874:83086_1:N:0:ATCACG Contig299081 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14736:83468_1:N:0:ATCACG Contig48729 5936 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6157:84669_1:N:0:ATCACG Contig54452 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13324:85541_1:N:0:ATCACG Contig150027 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16080:86264_1:N:0:ATCACG Contig34492 3656 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12271:90000_1:N:0:ATCACG Contig204282 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9770:90429_1:N:0:ATCACG Contig171707 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14704:90778_1:N:0:ATCACG Contig43363 37542 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21258:95194_1:N:0:ATCACG Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12882:95301_1:N:0:ATCACG Contig189202 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4170:95568_1:N:0:ATCACG Contig319782 170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16747:96932_1:N:0:ATCACG Contig137089 1038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12021:97063_1:N:0:ATCACG Contig343408 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5109:97686_1:N:0:ATCACG Contig196982 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3936:98076_1:N:0:ATCACG Contig184682 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5184:4788_1:N:0:ATCACG Contig147292 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7253:6314_1:N:0:ATCACG Contig645560 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3324:8059_1:N:0:ATCACG Contig34599 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8015:8600_1:N:0:ATCACG Contig274803 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19644:8942_1:N:0:ATCACG Contig27610 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13865:10635_1:N:0:ATCACG Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19024:13393_1:N:0:ATCACG Contig631463 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5733:13654_1:N:0:ATCACG Contig266883 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13103:14600_1:N:0:ATCACG Contig220404 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18372:14738_1:N:0:ATCACG Contig632545 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12933:16626_1:N:0:ATCACG Contig377908 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7477:16774_1:N:0:ATCACG Contig606524 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14354:20310_1:N:0:ATCACG Contig87209 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15414:22853_1:N:0:ATCACG Contig117276 7099 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16426:22793_1:N:0:ATCACG Contig37751 947 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14218:24684_1:N:0:ATCACG Contig14410 174 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14073:27839_1:N:0:ATCACG Contig591427 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7007:28616_1:N:0:ATCACG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10336:30255_1:N:0:ATCACG Contig9424 2289 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2478:33423_1:N:0:ATCACG Contig496014 282 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1454:35218_1:N:0:ATCACG Contig561557 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11934:35301_1:N:0:ATCACG Contig324978 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11925:35337_1:N:0:ATCACG Contig324978 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13539:36700_1:N:0:ATCACG Contig371823 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14979:40387_1:N:0:ATCACG Contig236944 131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15473:40520_1:N:0:ATCACG Contig302826 270 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14943:41262_1:N:0:ATCACG Contig530019 131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20634:42351_1:N:0:ATCACG Contig694583 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20682:43619_1:N:0:ATCACG Contig60925 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6670:43900_1:N:0:ATCACG Contig154133 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10913:45740_1:N:0:ATCACG Contig362232 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8570:46374_1:N:0:ATCACG Contig349501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3001:47290_1:N:0:ATCACG Contig204850 1222 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18548:47545_1:N:0:ATCACG Contig186372 6130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5077:47755_1:N:0:ATCACG Contig342617 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17530:47766_1:N:0:ATCACG Contig212312 982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13158:48231_1:N:0:ATCACG Contig401060 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20787:51152_1:N:0:ATCACG Contig318852 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3558:52963_1:N:0:ATCACG Contig584498 122 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11648:54029_1:N:0:ATCACG Contig51130 26565 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11812:56185_1:N:0:ATCACG Contig206888 690 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8919:59476_1:N:0:ATCACG Contig166447 712 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16413:61717_1:N:0:ATCACG Contig19712 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8684:62358_1:N:0:ATCACG Contig124506 1057 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17998:63358_1:N:0:ATCACG Contig140382 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3367:66598_1:N:0:ATCACG Contig313433 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12136:66656_1:N:0:ATCACG Contig4150 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20461:71135_1:N:0:ATCACG Contig629431 217 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16463:73872_1:N:0:ATCACG Contig455509 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1740:74048_1:N:0:ATCACG Contig414811 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4448:77910_1:N:0:ATCACG Contig46359 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7662:79532_1:N:0:ATCACG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9085:81203_1:N:0:ATCACG Contig430926 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3588:81329_1:N:0:ATCACG Contig352277 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12577:81369_1:N:0:ATCACG Contig108449 1170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18203:82881_1:N:0:ATCACG Contig266499 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1757:84005_1:N:0:ATCACG Contig391491 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9354:84729_1:N:0:ATCACG Contig10434 2274 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3019:85561_1:N:0:ATCACG Contig475499 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12615:88285_1:N:0:ATCACG Contig31612 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5249:89863_1:N:0:ATCACG Contig612958 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7981:90226_1:N:0:ATCACG Contig212960 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16690:90922_1:N:0:ATCACG Contig606367 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3071:91045_1:N:0:ATCACG Contig397146 363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8975:91348_1:N:0:ATCACG Contig435713 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3522:92392_1:N:0:ATCACG Contig211035 785 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9735:99050_1:N:0:ATCACG Contig431712 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15104:2717_1:N:0:ATCACG Contig359995 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13712:5340_1:N:0:ATCACG Contig302095 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15216:5796_1:N:0:ATCACG Contig50959 2337 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4232:6654_1:N:0:ATCACG Contig4083 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7662:6743_1:N:0:ATCACG Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7767:10003_1:N:0:ATCACG Contig393847 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2832:10877_1:N:0:ATCACG Contig556038 407 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12482:11279_1:N:0:ATCACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1118:11802_1:N:0:ATCACG Contig24199 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15866:13384_1:N:0:ATCACG Contig53023 9203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9610:15758_1:N:0:ATCACG Contig598552 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1170:17818_1:N:0:ATCACG Contig71189 25017 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5251:18536_1:N:0:ATCACG Contig232335 215 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8611:19930_1:N:0:ATCACG Contig687501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8636:19968_1:N:0:ATCACG Contig687501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12660:21206_1:N:0:ATCACG Contig81801 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1515:21610_1:N:0:ATCACG Contig631884 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2517:24862_1:N:0:ATCACG Contig150027 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14480:29660_1:N:0:ATCACG Contig619682 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14215:34396_1:N:0:ATCACG Contig352543 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13875:35450_1:N:0:ATCACG Contig338556 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11195:37434_1:N:0:ATCACG Contig222310 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18667:37734_1:N:0:ATCACG Contig241992 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19885:39193_1:N:0:ATCACG Contig454885 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6950:41342_1:N:0:ATCACG Contig675749 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6838:42729_1:N:0:ATCACG Contig138211 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19023:43920_1:N:0:ATCACG Contig667415 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4512:44924_1:N:0:ATCACG Contig565889 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9946:45837_1:N:0:ATCACG Contig25160 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9202:46313_1:N:0:ATCACG Contig587578 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15525:46399_1:N:0:ATCACG Contig20927 31992 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19386:47644_1:N:0:ATCACG Contig155508 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15623:48232_1:N:0:ATCACG Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11872:53369_1:N:0:ATCACG Contig90430 2981 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6703:55655_1:N:0:ATCACG Contig160526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20442:56270_1:N:0:ATCACG Contig203034 484 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20819:62126_1:N:0:ATCACG Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3562:64385_1:N:0:ATCACG Contig192275 1703 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1291:64972_1:N:0:ATCACG Contig9576 783 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19793:65262_1:N:0:ATCACG Contig696944 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7330:65974_1:N:0:ATCACG Contig54452 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3862:66205_1:N:0:ATCACG Contig160770 2243 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10965:67155_1:N:0:ATCACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7769:70057_1:N:0:ATCACG Contig365760 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11435:71691_1:N:0:ATCACG Contig55975 12926 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19800:72018_1:N:0:ATCACG Contig402793 150 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17865:74003_1:N:0:ATCACG Contig352517 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1217:76036_1:N:0:ATCACG Contig267665 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11314:76752_1:N:0:ATCACG Contig667258 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10950:77064_1:N:0:ATCACG Contig363540 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4652:79596_1:N:0:ATCACG Contig44367 662 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20611:80600_1:N:0:ATCACG Contig68472 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9232:81917_1:N:0:ATCACG Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14200:86057_1:N:0:ATCACG Contig690156 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5943:89114_1:N:0:ATCACG Contig113399 883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11839:92202_1:N:0:ATCACG Contig115342 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10000:93395_1:N:0:ATCACG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13425:94817_1:N:0:ATCACG Contig584153 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18062:94777_1:N:0:ATCACG Contig492255 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18447:98105_1:N:0:ATCACG Contig338315 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8797:99310_1:N:0:ATCACG Contig486028 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6949:101022_1:N:0:ATCACG Contig435135 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20346:2288_1:N:0:ATCACG Contig135488 2214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19546:2668_1:N:0:ATCACG Contig595789 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8247:4873_1:N:0:ATCACG Contig56716 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10028:7922_1:N:0:ATCACG Contig264341 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13640:10450_1:N:0:ATCACG Contig223842 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20901:11435_1:N:0:ATCACG Contig360647 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13917:13890_1:N:0:ATCACG Contig547110 313 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20497:14503_1:N:0:ATCACG Contig342167 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3099:15088_1:N:0:ATCACG Contig652810 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5090:17012_1:N:0:ATCACG Contig31460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4681:21420_1:N:0:ATCACG Contig306327 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10614:21669_1:N:0:ATCACG Contig118205 1583 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14232:25996_1:N:0:ATCACG Contig548856 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12519:26081_1:N:0:ATCACG Contig7920 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13947:33795_1:N:0:ATCACG Contig279673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7762:34679_1:N:0:ATCACG Contig87338 6048 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12798:34789_1:N:0:ATCACG Contig202325 716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4433:43575_1:N:0:ATCACG Contig384774 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14071:44217_1:N:0:ATCACG Contig63111 2845 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8908:44456_1:N:0:ATCACG Contig130907 824 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5973:44688_1:N:0:ATCACG Contig503511 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5403:46087_1:N:0:ATCACG Contig29385 31100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4072:46488_1:N:0:ATCACG Contig219343 4057 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6388:49385_1:N:0:ATCACG Contig74243 6005 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8149:50650_1:N:0:ATCACG Contig104895 10861 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18467:51141_1:N:0:ATCACG Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15731:51544_1:N:0:ATCACG Contig455098 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12300:52643_1:N:0:ATCACG Contig197153 628 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19299:52687_1:N:0:ATCACG Contig546408 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12972:55176_1:N:0:ATCACG Contig606186 232 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10154:55713_1:N:0:ATCACG Contig169721 708 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18309:56661_1:N:0:ATCACG Contig78456 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6546:56890_1:N:0:ATCACG Contig478818 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13663:58063_1:N:0:ATCACG Contig203024 1962 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13815:58350_1:N:0:ATCACG Contig13167 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14522:59538_1:N:0:ATCACG Contig110796 2074 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14922:61033_1:N:0:ATCACG Contig376959 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11829:62336_1:N:0:ATCACG Contig679309 286 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1518:63275_1:N:0:ATCACG Contig61432 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6229:63492_1:N:0:ATCACG Contig398227 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3881:65259_1:N:0:ATCACG Contig105312 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4566:66395_1:N:0:ATCACG Contig146131 1132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18109:67783_1:N:0:ATCACG Contig484839 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9409:72973_1:N:0:ATCACG Contig646142 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18246:75443_1:N:0:ATCACG Contig248441 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18700:77275_1:N:0:ATCACG Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2052:80193_1:N:0:ATCACG Contig212553 495 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7800:81896_1:N:0:ATCACG Contig24029 6626 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8875:82667_1:N:0:ATCACG Contig263177 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19277:82944_1:N:0:ATCACG Contig72124 9363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3299:84038_1:N:0:ATCACG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11457:84497_1:N:0:ATCACG Contig518805 319 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13895:84327_1:N:0:ATCACG Contig258763 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11199:84609_1:N:0:ATCACG Contig633885 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13782:85358_1:N:0:ATCACG Contig411197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20585:85808_1:N:0:ATCACG Contig406233 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16232:86850_1:N:0:ATCACG Contig543958 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13458:88967_1:N:0:ATCACG Contig671806 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10044:89433_1:N:0:ATCACG Contig315549 115 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4997:98796_1:N:0:ATCACG Contig212073 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16360:99617_1:N:0:ATCACG Contig306375 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14416:2714_1:N:0:ATCACG Contig165074 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11196:2968_1:N:0:ATCACG Contig153389 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19710:5182_1:N:0:ATCACG Contig551111 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18458:7392_1:N:0:ATCACG Contig625211 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7197:11888_1:N:0:ATCACG Contig385826 132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7421:11859_1:N:0:ATCACG Contig147850 1368 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4345:15735_1:N:0:ATCACG Contig292420 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11529:20123_1:N:0:ATCACG Contig398248 143 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6584:20889_1:N:0:ATCACG Contig501892 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12928:21745_1:N:0:ATCACG Contig444393 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5251:22628_1:N:0:ATCACG Contig343139 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14463:24249_1:N:0:ATCACG Contig458377 135 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13863:24865_1:N:0:ATCACG Contig266475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5862:25751_1:N:0:ATCACG Contig641200 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3543:27276_1:N:0:ATCACG Contig664971 217 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3398:27783_1:N:0:ATCACG Contig533827 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6406:31432_1:N:0:ATCACG Contig91312 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13631:31684_1:N:0:ATCACG Contig22185 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21153:32240_1:N:0:ATCACG Contig152902 410 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17952:32735_1:N:0:ATCACG Contig681504 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1327:32968_1:N:0:ATCACG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10341:32988_1:N:0:ATCACG Contig498424 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4380:34794_1:N:0:ATCACG Contig348151 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6028:36239_1:N:0:ATCACG Contig281988 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12986:39625_1:N:0:ATCACG Contig159379 8237 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4623:40055_1:N:0:ATCACG Contig497555 157 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20812:40855_1:N:0:ATCACG Contig434624 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11250:41233_1:N:0:ATCACG Contig34870 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2676:47702_1:N:0:ATCACG Contig628977 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9569:50919_1:N:0:ATCACG Contig493485 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15387:50777_1:N:0:ATCACG Contig149010 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15353:50784_1:N:0:ATCACG Contig149010 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16549:51576_1:N:0:ATCACG Contig14546 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18606:54749_1:N:0:ATCACG Contig339384 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11195:55689_1:N:0:ATCACG Contig191232 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7009:55960_1:N:0:ATCACG Contig1033 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15918:56135_1:N:0:ATCACG Contig211439 1102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11934:56829_1:N:0:ATCACG Contig341230 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14708:57654_1:N:0:ATCACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13860:58668_1:N:0:ATCACG Contig250960 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4884:59154_1:N:0:ATCACG Contig29630 3993 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9914:61468_1:N:0:ATCACG Contig34049 3456 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7218:61709_1:N:0:ATCACG Contig573418 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18152:63986_1:N:0:ATCACG Contig156199 239 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5835:64118_1:N:0:ATCACG Contig198635 414 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13909:64789_1:N:0:ATCACG Contig53023 9203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5943:66102_1:N:0:ATCACG Contig512767 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18971:68161_1:N:0:ATCACG Contig676640 300 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7642:68256_1:N:0:ATCACG Contig93734 7001 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4753:69371_1:N:0:ATCACG Contig431770 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2148:70597_1:N:0:ATCACG Contig573103 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12535:71055_1:N:0:ATCACG Contig334754 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4812:72895_1:N:0:ATCACG Contig687035 201 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17145:72984_1:N:0:ATCACG Contig637253 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15831:73262_1:N:0:ATCACG Contig288953 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4591:73915_1:N:0:ATCACG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16473:78286_1:N:0:ATCACG Contig238503 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16553:78403_1:N:0:ATCACG Contig463676 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4141:83267_1:N:0:ATCACG Contig458473 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16625:84459_1:N:0:ATCACG Contig613094 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14494:85245_1:N:0:ATCACG Contig603513 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17180:85714_1:N:0:ATCACG Contig144464 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15865:87550_1:N:0:ATCACG Contig378758 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12675:89508_1:N:0:ATCACG Contig636632 224 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12821:89984_1:N:0:ATCACG Contig26049 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10375:93490_1:N:0:ATCACG Contig676269 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5750:94494_1:N:0:ATCACG Contig562541 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10650:94475_1:N:0:ATCACG Contig74886 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18774:94915_1:N:0:ATCACG Contig269160 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6816:95173_1:N:0:ATCACG Contig205813 1525 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6222:96550_1:N:0:ATCACG Contig664564 112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8333:96613_1:N:0:ATCACG Contig41951 370 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2132:97611_1:N:0:ATCACG Contig423232 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11717:98359_1:N:0:ATCACG Contig328954 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6118:98990_1:N:0:ATCACG Contig303040 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19025:100455_1:N:0:ATCACG Contig68996 9958 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3005:3940_1:N:0:ATCACG Contig44086 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8918:3867_1:N:0:ATCACG Contig72124 9363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13034:4714_1:N:0:ATCACG Contig68810 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9144:5264_1:N:0:ATCACG Contig513829 121 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7037:7818_1:N:0:ATCACG Contig688257 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8592:8757_1:N:0:ATCACG Contig182247 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5811:9801_1:N:0:ATCACG Contig568374 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7107:10091_1:N:0:ATCACG Contig600084 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1632:12067_1:N:0:ATCACG Contig71887 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10315:12783_1:N:0:ATCACG Contig335108 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1282:14316_1:N:0:ATCACG Contig512982 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1578:15076_1:N:0:ATCACG Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9655:15562_1:N:0:ATCACG Contig30655 1639 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17170:15631_1:N:0:ATCACG Contig32976 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6210:17523_1:N:0:ATCACG Contig642414 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4248:18352_1:N:0:ATCACG Contig122701 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2556:19306_1:N:0:ATCACG Contig43880 6705 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6987:19878_1:N:0:ATCACG Contig519196 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18732:21835_1:N:0:ATCACG Contig5662 15487 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12019:22682_1:N:0:ATCACG Contig561083 106 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20459:23400_1:N:0:ATCACG Contig427683 132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11040:25064_1:N:0:ATCACG Contig367894 214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13319:27010_1:N:0:ATCACG Contig690156 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13417:28597_1:N:0:ATCACG Contig344875 112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16802:28708_1:N:0:ATCACG Contig291316 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2876:30500_1:N:0:ATCACG Contig637735 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18027:31677_1:N:0:ATCACG Contig288087 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16169:31784_1:N:0:ATCACG Contig152528 406 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13420:35347_1:N:0:ATCACG Contig672134 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2363:37784_1:N:0:ATCACG Contig271630 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11146:38334_1:N:0:ATCACG Contig359990 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18213:39957_1:N:0:ATCACG Contig243511 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18087:40018_1:N:0:ATCACG Contig568374 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5214:40590_1:N:0:ATCACG Contig408113 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11946:45401_1:N:0:ATCACG Contig52058 3536 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19878:45531_1:N:0:ATCACG Contig402077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9024:45972_1:N:0:ATCACG Contig58406 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4989:46224_1:N:0:ATCACG Contig56716 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2431:46643_1:N:0:ATCACG Contig449308 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11105:48744_1:N:0:ATCACG Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11978:48840_1:N:0:ATCACG Contig248714 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11248:50550_1:N:0:ATCACG Contig75372 2716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18747:50575_1:N:0:ATCACG Contig617625 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8270:51076_1:N:0:ATCACG Contig553625 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9498:51987_1:N:0:ATCACG Contig263569 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4921:52647_1:N:0:ATCACG Contig196877 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13384:54693_1:N:0:ATCACG Contig637551 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7451:57848_1:N:0:ATCACG Contig625707 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10486:58456_1:N:0:ATCACG Contig316799 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10900:58426_1:N:0:ATCACG Contig315471 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8584:58518_1:N:0:ATCACG Contig178875 629 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6977:65738_1:N:0:ATCACG Contig204267 1242 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10370:66470_1:N:0:ATCACG Contig4150 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17310:67980_1:N:0:ATCACG Contig198045 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5737:71650_1:N:0:ATCACG Contig487124 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21214:71723_1:N:0:ATCACG Contig679606 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13844:72877_1:N:0:ATCACG Contig425233 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19086:73055_1:N:0:ATCACG Contig3651 7069 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11138:74403_1:N:0:ATCACG Contig27938 18522 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3731:76044_1:N:0:ATCACG Contig379674 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5908:77906_1:N:0:ATCACG Contig436570 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16547:79564_1:N:0:ATCACG Contig123177 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3102:81903_1:N:0:ATCACG Contig618843 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16420:83162_1:N:0:ATCACG Contig221471 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5147:83991_1:N:0:ATCACG Contig2151 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14118:85148_1:N:0:ATCACG Contig351498 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14419:85055_1:N:0:ATCACG Contig91749 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10381:85259_1:N:0:ATCACG Contig260780 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6210:87026_1:N:0:ATCACG Contig476497 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18927:87334_1:N:0:ATCACG Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13859:88031_1:N:0:ATCACG Contig82776 4205 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10087:89426_1:N:0:ATCACG Contig512380 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3837:89644_1:N:0:ATCACG Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1483:90073_1:N:0:ATCACG Contig180871 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19210:90881_1:N:0:ATCACG Contig654091 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6807:91287_1:N:0:ATCACG Contig427683 132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13950:92572_1:N:0:ATCACG Contig49813 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11104:92907_1:N:0:ATCACG Contig331062 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7387:95704_1:N:0:ATCACG Contig74 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11610:96691_1:N:0:ATCACG Contig98221 1525 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2640:97956_1:N:0:ATCACG Contig245890 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7078:98357_1:N:0:ATCACG Contig28864 27256 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12337:98755_1:N:0:ATCACG Contig308706 265 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14162:98857_1:N:0:ATCACG Contig156638 13243 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13937:100707_1:N:0:ATCACG Contig479887 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10924:7705_1:N:0:ATCACG Contig476380 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12212:8975_1:N:0:ATCACG Contig565990 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1229:15311_1:N:0:ATCACG Contig645616 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13270:15502_1:N:0:ATCACG Contig488370 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7160:16265_1:N:0:ATCACG Contig631016 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13932:18086_1:N:0:ATCACG Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19899:22247_1:N:0:ATCACG Contig642394 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1577:22407_1:N:0:ATCACG Contig194922 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5303:22849_1:N:0:ATCACG Contig209339 1925 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16656:26178_1:N:0:ATCACG Contig44707 8095 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20032:26642_1:N:0:ATCACG Contig59569 5109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13838:29240_1:N:0:ATCACG Contig178183 951 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7951:31239_1:N:0:ATCACG Contig454200 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14001:31284_1:N:0:ATCACG Contig433622 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20025:32596_1:N:0:ATCACG Contig326651 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11313:39188_1:N:0:ATCACG Contig145728 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10593:39830_1:N:0:ATCACG Contig492185 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14326:41926_1:N:0:ATCACG Contig11214 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11473:42926_1:N:0:ATCACG Contig32967 6464 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11035:45332_1:N:0:ATCACG Contig572431 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10266:47036_1:N:0:ATCACG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5905:48299_1:N:0:ATCACG Contig660569 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10684:50139_1:N:0:ATCACG Contig119430 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1379:51086_1:N:0:ATCACG Contig77955 1765 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4095:51440_1:N:0:ATCACG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12708:53975_1:N:0:ATCACG Contig675635 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7208:56597_1:N:0:ATCACG Contig231516 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19952:57815_1:N:0:ATCACG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2806:58361_1:N:0:ATCACG Contig67821 3136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5323:59717_1:N:0:ATCACG Contig454365 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15171:59938_1:N:0:ATCACG Contig178183 951 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10045:61309_1:N:0:ATCACG Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15465:61574_1:N:0:ATCACG Contig690156 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7573:62290_1:N:0:ATCACG Contig213739 1425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4274:62929_1:N:0:ATCACG Contig66675 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16013:62755_1:N:0:ATCACG Contig4058 8822 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15460:65732_1:N:0:ATCACG Contig46726 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6323:66418_1:N:0:ATCACG Contig8329 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16251:66288_1:N:0:ATCACG Contig91749 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5896:69355_1:N:0:ATCACG Contig232722 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9885:69382_1:N:0:ATCACG Contig262857 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20108:72744_1:N:0:ATCACG Contig579908 126 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7609:76292_1:N:0:ATCATG Contig598613 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14207:77771_1:N:0:ATCACG Contig129205 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17704:80330_1:N:0:ATCACG Contig508824 209 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10590:80544_1:N:0:ATCACG Contig260166 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3282:84255_1:N:0:ATCACG Contig53023 9203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19469:84495_1:N:0:ATCACG Contig102835 1345 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7853:87683_1:N:0:ATCACG Contig692833 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15424:87839_1:N:0:ATCACG Contig417335 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20754:88245_1:N:0:ATCACG Contig26431 64865 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20208:88647_1:N:0:ATCACG Contig250604 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4805:89151_1:N:0:ATCACG Contig347934 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7392:89705_1:N:0:ATCACG Contig598079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3154:90271_1:N:0:ATCACG Contig328267 273 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8242:90251_1:N:0:ATCACG Contig25284 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4958:92080_1:N:0:ATCACG Contig24949 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15783:92080_1:N:0:ATCACG Contig379249 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15796:92085_1:N:0:ATCACG Contig379249 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17475:93604_1:N:0:ATCACG Contig109565 864 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4556:94324_1:N:0:ATCACA Contig105211 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17278:95499_1:N:0:ATCACG Contig10077 1732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5796:95550_1:N:0:ATCACG Contig14819 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12157:95886_1:N:0:ATCACG Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14488:97277_1:N:0:ATCACG Contig1548 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5241:98460_1:N:0:ATCACG Contig332501 198 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14220:99326_1:N:0:ATCACG Contig51703 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5939:3972_1:N:0:ATCACG Contig181046 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11100:5545_1:N:0:ATCACG Contig341373 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9587:8441_1:N:0:ATCACG Contig397203 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6800:10808_1:N:0:ATCACG Contig622320 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15493:12587_1:N:0:ATCACG Contig478091 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6667:13634_1:N:0:ATCACG Contig357315 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17208:15406_1:N:0:ATCACG Contig552872 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1411:16003_1:N:0:ATCACG Contig466091 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1807:17870_1:N:0:ATCACG Contig128909 3374 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16420:17857_1:N:0:ATCACG Contig453452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14592:22250_1:N:0:ATCACG Contig16985 787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20448:23050_1:N:0:ATCACG Contig554726 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3984:23289_1:N:0:ATCACG Contig80896 2001 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13125:25150_1:N:0:ATCACG Contig516916 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7194:28506_1:N:0:ATCACG Contig116148 1295 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8340:30204_1:N:0:ATCACG Contig236904 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5072:30450_1:N:0:ATCACG Contig205642 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21225:30653_1:N:0:ATCACG Contig110194 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4936:32479_1:N:0:ATCACG Contig349501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7589:32530_1:N:0:ATCACG Contig401584 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2168:37116_1:N:0:ATCACG Contig1200 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13815:38148_1:N:0:ATCACG Contig600751 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16492:40613_1:N:0:ATCACG Contig179806 470 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4092:42644_1:N:0:ATCACG Contig254250 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5635:42657_1:N:0:ATCACG Contig467201 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13161:42590_1:N:0:ATCACG Contig119155 26788 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18041:45746_1:N:0:ATCACG Contig26049 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8985:46097_1:N:0:ATCACG Contig95152 1485 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6424:46882_1:N:0:ATCACG Contig617335 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11536:47425_1:N:0:ATCACG Contig188238 1945 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3345:47550_1:N:0:ATCACG Contig422159 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9878:48130_1:N:0:ATCACG Contig340208 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8002:48896_1:N:0:ATCACG Contig365372 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10693:49690_1:N:0:ATCACG Contig50451 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6265:50278_1:N:0:ATCACG Contig395289 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14703:50958_1:N:0:ATCACG Contig93775 1630 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8472:54781_1:N:0:ATCACG Contig611330 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9177:54941_1:N:0:ATCACG Contig309170 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20936:56261_1:N:0:ATCACG Contig298345 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13716:57998_1:N:0:ATCACG Contig280945 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16971:58516_1:N:0:ATCACG Contig534865 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20960:59211_1:N:0:ATCACG Contig625279 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6392:60686_1:N:0:ATCACG Contig158704 1089 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20385:60928_1:N:0:ATCACG Contig690156 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16895:61142_1:N:0:ATCACG Contig52594 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17747:61746_1:N:0:ATCACG Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10393:62773_1:N:0:ATCACG Contig435 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7776:63069_1:N:0:ATCACG Contig164275 437 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11369:63014_1:N:0:ATCACG Contig655851 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10597:63331_1:N:0:ATCACG Contig673515 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8133:63662_1:N:0:ATCACG Contig179806 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14386:64093_1:N:0:ATCACG Contig390735 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4904:65339_1:N:0:ATCACG Contig63821 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7282:67836_1:N:0:ATCACG Contig399988 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2557:70685_1:N:0:ATCACG Contig243497 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6291:71506_1:N:0:ATCACG Contig244443 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7695:72014_1:N:0:ATCACG Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7594:73064_1:N:0:ATCACG Contig339581 592 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13397:74199_1:N:0:ATCACG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18912:74663_1:N:0:ATCACG Contig538625 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3642:74927_1:N:0:ATCACG Contig76256 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18954:75058_1:N:0:ATCACG Contig622798 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12332:76507_1:N:0:ATCACG Contig185107 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16376:80331_1:N:0:ATCACG Contig355919 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9395:81490_1:N:0:ATCACG Contig539186 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10166:82093_1:N:0:ATCACG Contig61695 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13509:83681_1:N:0:ATCACG Contig265350 180 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5385:84083_1:N:0:ATCACG Contig310027 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4237:84709_1:N:0:ATCACG Contig447780 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5972:84907_1:N:0:ATCACG Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20660:85098_1:N:0:ATCACG Contig338556 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20829:85106_1:N:0:ATCACG Contig54452 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19504:85477_1:N:0:ATCACG Contig483238 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1727:87147_1:N:0:ATCACG Contig654451 111 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16636:87356_1:N:0:ATCACG Contig137089 1038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18719:90449_1:N:0:ATCACG Contig203549 1148 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11428:91443_1:N:0:ATCACG Contig407304 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8893:92109_1:N:0:ATCACG Contig617279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9269:92685_1:N:0:ATCACG Contig211506 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13591:93268_1:N:0:ATCACG Contig308921 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12429:93515_1:N:0:ATCACG Contig110860 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4417:95508_1:N:0:ATCACG Contig53528 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3308:96426_1:N:0:ATCACG Contig39374 398 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13009:98876_1:N:0:ATCACG Contig86935 2023 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3706:100044_1:N:0:ATCACG Contig87970 8051 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20301:2235_1:N:0:ATCACG Contig132109 5282 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7564:2655_1:N:0:ATCACG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19064:2959_1:N:0:ATCACG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20756:2803_1:N:0:ATCACG Contig271009 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14101:5346_1:N:0:ATCACG Contig125259 1317 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8966:8270_1:N:0:ATCACG Contig330000 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12380:9808_1:N:0:ATCACG Contig458752 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18934:9931_1:N:0:ATCACG Contig8946 1926 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5044:11166_1:N:0:ATCACG Contig283049 442 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6448:11945_1:N:0:ATCACG Contig172694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11113:12861_1:N:0:ATCACG Contig170350 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13144:13464_1:N:0:ATCACG Contig44216 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6021:15041_1:N:0:ATCACG Contig24176 345 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19445:17315_1:N:0:ATCACG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2335:17676_1:N:0:ATCACG Contig325954 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3547:19741_1:N:0:ATCACG Contig56777 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13036:19548_1:N:0:ATCACG Contig268182 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8804:19785_1:N:0:ATCACG Contig279398 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1741:22104_1:N:0:ATCACG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16594:22401_1:N:0:ATCACG Contig559707 329 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17462:22338_1:N:0:ATCACG Contig167850 590 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1512:22877_1:N:0:ATCACG Contig102838 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5380:23278_1:N:0:ATCACG Contig368019 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18557:25018_1:N:0:ATCACG Contig402431 132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12021:25797_1:N:0:ATCACG Contig676633 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14789:26352_1:N:0:ATCACG Contig478525 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2246:27033_1:N:0:ATCACG Contig159471 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14532:30108_1:N:0:ATCACG Contig602857 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19829:32365_1:N:0:ATCACG Contig9137 6894 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1672:33890_1:N:0:ATCACG Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11727:33997_1:N:0:ATCACG Contig642301 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1748:34746_1:N:0:ATCACG Contig401196 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11788:35190_1:N:0:ATCACG Contig110194 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15417:35590_1:N:0:ATCACG Contig17375 666 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9977:38114_1:N:0:ATCACG Contig85594 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14471:39481_1:N:0:ATCACG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20045:39709_1:N:0:ATCACG Contig372243 160 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1731:40636_1:N:0:ATCACG Contig667907 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17163:40723_1:N:0:ATCACG Contig598079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3893:42216_1:N:0:ATCACG Contig572129 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18719:43677_1:N:0:ATCACG Contig15974 2999 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11715:45232_1:N:0:ATCACG Contig538657 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10936:46074_1:N:0:ATCACG Contig657013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8193:47462_1:N:0:ATCACG Contig694092 118 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2494:47617_1:N:0:ATCACG Contig502258 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9798:47990_1:N:0:ATCACG Contig129205 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11556:48667_1:N:0:ATCACG Contig210354 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16173:48746_1:N:0:ATCACG Contig67821 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14943:50442_1:N:0:ATCACG Contig28478 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11106:51159_1:N:0:ATCACG Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14694:51217_1:N:0:ATCACG Contig145853 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7061:51269_1:N:0:ATCACG Contig418030 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2989:51638_1:N:0:ATCACG Contig326435 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14272:54182_1:N:0:ATCACG Contig134290 1092 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12592:55012_1:N:0:ATCACG Contig128149 1465 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14883:55212_1:N:0:ATCACG Contig428100 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:21127:56708_1:N:0:ATCACG Contig636666 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10744:56818_1:N:0:ATCACG Contig614144 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3419:57914_1:N:0:ATCACG Contig567455 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11213:59935_1:N:0:ATCACG Contig319439 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5744:63362_1:N:0:ATCACG Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:21038:65837_1:N:0:ATGACG Contig467490 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16884:66168_1:N:0:ATCACG Contig652400 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11785:67275_1:N:0:ATCACG Contig597754 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15275:67303_1:N:0:ATCACG Contig216935 747 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13301:67836_1:N:0:ATCACG Contig175015 755 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16374:68296_1:N:0:ATCACG Contig328183 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4513:68718_1:N:0:ATCACG Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12187:69308_1:N:0:ATCACG Contig211945 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18891:71471_1:N:0:ATCACG Contig572456 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16079:74236_1:N:0:ATCACG Contig57447 3326 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9148:74693_1:N:0:ATCACG Contig410851 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9503:75079_1:N:0:ATCACG Contig315784 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19992:75909_1:N:0:ATCACG Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14567:76006_1:N:0:ATCACG Contig410765 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18678:77656_1:N:0:ATCACG Contig581906 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15824:79079_1:N:0:ATCACG Contig572150 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17041:79356_1:N:0:ATCACG Contig140341 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1403:79634_1:N:0:ATCACG Contig54040 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15675:81682_1:N:0:ATCACG Contig120734 2360 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7480:82368_1:N:0:ATCACG Contig111171 6771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7515:82375_1:N:0:ATCACG Contig111171 6771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16628:83043_1:N:0:ATCACG Contig48797 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18858:85920_1:N:0:ATCACG Contig302024 129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13474:87315_1:N:0:ATCACG Contig200528 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2239:89023_1:N:0:ATCACG Contig598079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20811:90332_1:N:0:ATCACG Contig340208 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5609:91250_1:N:0:ATCACG Contig649984 165 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17634:91208_1:N:0:ATCACG Contig310077 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16756:91370_1:N:0:ATCACG Contig138338 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7008:91934_1:N:0:ATCACG Contig457488 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1889:92764_1:N:0:ATCACG Contig251828 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8987:93454_1:N:0:ATCACG Contig203034 485 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12462:95272_1:N:0:ATCACG Contig392759 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19138:97453_1:N:0:ATCACG Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2622:98114_1:N:0:ATCACG Contig484374 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19452:98031_1:N:0:ATCACG Contig140867 1336 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1693:99625_1:N:0:ATCACG Contig298153 304 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13554:100826_1:N:0:ATCACG Contig88252 5309 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7195:4097_1:N:0:ATCACG Contig454885 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20925:4130_1:N:0:ATCACG Contig464425 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:8418:4289_1:N:0:ATCACG Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7609:12747_1:N:0:ATCACG Contig52883 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:17296:13298_1:N:0:ATCACG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18783:13704_1:N:0:ATCACG Contig178183 951 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18885:13894_1:N:0:ATCACG Contig486727 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:8076:15398_1:N:0:ATCACG Contig160526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7177:16950_1:N:0:ATCACG Contig569910 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:13980:17375_1:N:0:ATCACG Contig574936 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16256:17925_1:N:0:ATCACG Contig618292 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:4756:21102_1:N:0:ATCACG Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:2344:21901_1:N:0:ATCACG Contig213533 930 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16876:22545_1:N:0:ATCACG Contig99807 3834 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7037:22871_1:N:0:ATCACG Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:8907:23554_1:N:0:ATCACG Contig472890 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3325:25342_1:N:0:ATCACG Contig500144 128 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:9813:25575_1:N:0:ATCACG Contig7844 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1614:28037_1:N:0:ATCACG Contig146112 2013 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:9840:28344_1:N:0:ATCACG Contig46982 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1609:28961_1:N:0:ATCACG Contig518065 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:9083:29153_1:N:0:ATCACG Contig634792 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:13739:30065_1:N:0:ATCACG Contig133579 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:8171:30748_1:N:0:ATCACG Contig113399 883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1596:33672_1:N:0:ATCACG Contig628410 117 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:12723:33741_1:N:0:ATCACG Contig200542 2475 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:5291:34560_1:N:0:ATCACG Contig190979 802 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19716:35761_1:N:0:ATCACG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7549:37516_1:N:0:ATCACG Contig118861 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3853:39562_1:N:0:ATCACG Contig345919 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3668:41068_1:N:0:ATCACA Contig399688 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:5107:41221_1:N:0:ATCACG Contig287273 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:4301:41626_1:N:0:ATCACG Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:2768:45281_1:N:0:ATCACG Contig51452 7799 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3618:46180_1:N:0:ATCACG Contig301540 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:2174:46883_1:N:0:ATCACG Contig306730 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:2509:48203_1:N:0:ATCACG Contig77722 6580 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20988:48150_1:N:0:ATCACG Contig629945 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:12998:48479_1:N:0:ATCACG Contig166245 1482 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20951:49142_1:N:0:ATCACG Contig568374 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18294:51501_1:N:0:ATCACG Contig345418 145 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20025:52244_1:N:0:ATCACG Contig526460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3028:54380_1:N:0:ATCACG Contig574235 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16509:55972_1:N:0:ATCACG Contig315618 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19783:56490_1:N:0:ATCACG Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3151:57226_1:N:0:ATCACG Contig658195 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:8590:57376_1:N:0:ATCACG Contig623043 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:14991:60087_1:N:0:ATCACG Contig258676 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16116:60369_1:N:0:ATCACG Contig366056 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16822:60275_1:N:0:ATCACG Contig623906 320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7642:61803_1:N:0:ATCACG Contig22900 28602 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:11734:61806_1:N:0:ATCACG Contig352277 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20622:61836_1:N:0:ATCACG Contig345930 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:4474:62258_1:N:0:ATCACG Contig218635 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18650:63490_1:N:0:ATCACG Contig46712 6253 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:11722:64768_1:N:0:ATCACG Contig457780 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3792:67820_1:N:0:ATCACG Contig384268 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:17653:68937_1:N:0:ATCACG Contig439573 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7857:69777_1:N:0:ATCACG Contig301173 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:17784:69785_1:N:0:ATCACG Contig55590 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1880:73505_1:N:0:ATCACG Contig287122 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:10752:74243_1:N:0:ATCACG Contig285119 182 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:12103:74262_1:N:0:ATCACG Contig367943 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1472:74551_1:N:0:ATCACG Contig460670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:5382:74918_1:N:0:ATCACG Contig9323 1624 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:2747:75649_1:N:0:ATCACG Contig379298 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:12869:78733_1:N:0:ATCACG Contig63536 9413 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:2891:80554_1:N:0:ATCACG Contig61666 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7961:80502_1:N:0:ATCACG Contig259256 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:10437:80547_1:N:0:ATCACG Contig82972 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:11324:80839_1:N:0:ATCACG Contig587867 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1762:82248_1:N:0:ATCACG Contig27322 3521 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3787:83130_1:N:0:ATCACG Contig36268 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:4657:83585_1:N:0:ATCACG Contig295496 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18395:85951_1:N:0:ATCACG Contig436335 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:17370:86062_1:N:0:ATCACG Contig12407 965 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1201:86860_1:N:0:ATCACG Contig302359 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18012:87255_1:N:0:ATCACG Contig531173 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16326:89024_1:N:0:ATCACG Contig575667 1041 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:4157:92411_1:N:0:ATCACG Contig510283 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1995:93894_1:N:0:ATCACG Contig98081 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19768:94582_1:N:0:ATCACG Contig619856 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3910:95706_1:N:0:ATCACG Contig482041 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:8476:96178_1:N:0:ATCACG Contig616288 391 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20961:96104_1:N:0:ATCACG Contig137206 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:15390:96370_1:N:0:ATCACG Contig238624 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20604:96679_1:N:0:ATCACG Contig632311 136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:10537:98810_1:N:0:ATCACG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:15545:98916_1:N:0:ATCACG Contig52673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:6322:2364_1:N:0:ATCACG Contig212165 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:3118:3752_1:N:0:ATCACG Contig14689 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:4946:3793_1:N:0:ATCACG Contig542642 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:11164:4400_1:N:0:ATCACG Contig347987 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:20358:5435_1:N:0:ATCACG Contig118556 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:10926:5997_1:N:0:ATCACG Contig189418 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:20939:6180_1:N:0:ATCACG Contig126385 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:9982:7636_1:N:0:ATCACG Contig173061 1158 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:15191:8258_1:N:0:ATCACG Contig641200 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:11462:9375_1:N:0:ATCACG Contig574750 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:7630:10134_1:N:0:ATCACG Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:12283:11528_1:N:0:ATCACG Contig671104 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:4108:13297_1:N:0:ATCACG Contig300694 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:16605:14200_1:N:0:ATCACG Contig560004 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:18741:15261_1:N:0:ATCACG Contig474901 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:1117:16807_1:N:0:ATCACG Contig637386 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:5233:17345_1:N:0:ATCACG Contig417066 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:9161:18015_1:N:0:ATCACG Contig257530 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:5673:20086_1:N:0:ATCACG Contig186958 845 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:13759:20793_1:N:0:ATCACG Contig221011 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:9050:22048_1:N:0:ATCACG Contig385341 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:11585:23719_1:N:0:ATCACG Contig690108 338 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:3760:24510_1:N:0:ATCACG Contig285268 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:11650:24879_1:N:0:ATCACG Contig61463 7252 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:16732:25202_1:N:0:ATCACG Contig433142 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:5768:26171_1:N:0:ATCACG Contig167863 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:3560:26455_1:N:0:ATCACG Contig608154 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:11095:26417_1:N:0:ATCACG Contig117977 180 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1111:18938:26892_1:N:0:ATCACG Contig679820 73 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 363675 (36.37%) aligned 0 times 220081 (22.01%) aligned exactly 1 time 416244 (41.62%) aligned >1 times 63.63% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 791762 (79.18%) aligned 0 times 109464 (10.95%) aligned exactly 1 time 98774 (9.88%) aligned >1 times 20.82% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 792556 (79.26%) aligned 0 times 109167 (10.92%) aligned exactly 1 time 98277 (9.83%) aligned >1 times 20.74% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 363567 (36.36%) aligned 0 times 218994 (21.90%) aligned exactly 1 time 417439 (41.74%) aligned >1 times 63.64% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 1_ATCACG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 1_ATCACG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 402696 Mapping efficiency: 40.3% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2271556 Total methylated C's in CpG context: 89270 Total methylated C's in CHG context: 6460 Total methylated C's in CHH context: 118528 Total methylated C's in Unknown context: 31 Total unmethylated C's in CpG context: 220987 Total unmethylated C's in CHG context: 414387 Total unmethylated C's in CHH context: 1421924 Total unmethylated C's in Unknown context: 389 C methylated in CpG context: 28.8% C methylated in CHG context: 1.5% C methylated in CHH context: 7.7% C methylated in Unknown context (CN or CHN): 7.4% Bismark completed in 0d 0h 22m 37s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/2_CGATGT_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 2_CGATGT_L001_R1_001_trimmed.fq.gz to 2_CGATGT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 2_CGATGT_L001_R1_001_trimmed.fq.gz to 2_CGATGT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 2_CGATGT_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 2_CGATGT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 2_CGATGT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 2_CGATGT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1167:2169_1:N:0:CGATGT 0 Contig89802_CT_converted 3947 1 31M * 0 0 GATTTTTTAATTATGATAATTTGTTTATTTT HFHIJJIJJIIHEHGGIIJJGGIGIJJIIIJ AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from 2_CGATGT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1167:2169_1:N:0:CGATGT 16 Contig54799_GA_converted 25022 1 31M * 0 0 AAAATAAACAAATTATCATAATTAAAAAATC JIIIJJIGIGGJJIIGGHEHIIJJIJJIHFH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from 2_CGATGT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1167:2169_1:N:0:CGATGT 4 * 0 0 * * 0 0 AATTTTTTAATTATAATAATTTATTTATTTT HFHIJJIJJIIHEHGGIIJJGGIGIJJIIIJ YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 2_CGATGT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1167:2169_1:N:0:CGATGT 4 * 0 0 * * 0 0 AATTTTTTAATTATAATAATTTATTTATTTT HFHIJJIJJIIHEHGGIIJJGGIGIJJIIIJ YT:Z:UU >>> Writing bisulfite mapping results to 2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/2_CGATGT_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21204:3032_1:N:0:CGATGT Contig322052 403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16665:6950_1:N:0:CGATGT Contig517180 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7589:8353_1:N:0:CGATGT Contig527534 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10304:8362_1:N:0:CGATGT Contig312162 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16352:9364_1:N:0:CGATGT Contig133654 3854 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6810:9744_1:N:0:CGATGT Contig93742 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21051:9568_1:N:0:CGATGT Contig557455 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20856:11523_1:N:0:CGATGT Contig345113 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5240:11774_1:N:0:CGATGT Contig95356 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19006:12167_1:N:0:CGATGT Contig226780 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11190:12444_1:N:0:CGATGT Contig177153 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9552:13225_1:N:0:CGATGT Contig455746 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4036:14154_1:N:0:CGATGT Contig52673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12764:14204_1:N:0:CGATGT Contig130996 2210 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16632:16138_1:N:0:CGATGT Contig252221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6727:18481_1:N:0:CGATGT Contig19038 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17628:18949_1:N:0:CGATGT Contig54975 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18187:20038_1:N:0:CGATGT Contig488312 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13319:21518_1:N:0:CGATGT Contig42134 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15194:21600_1:N:0:CGATGT Contig307743 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11121:23326_1:N:0:CGATGT Contig690219 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13109:24345_1:N:0:CGATGT Contig7020 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13070:25655_1:N:0:CGATGT Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5046:26865_1:N:0:CGATGT Contig16748 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19017:29106_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3810:34055_1:N:0:CGATGT Contig262483 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15079:34857_1:N:0:CGATGT Contig590020 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9976:35275_1:N:0:CGATGT Contig208406 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1256:35516_1:N:0:CGATGT Contig135488 2214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8930:37249_1:N:0:CGATGT Contig553555 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11040:37325_1:N:0:CGATGT Contig584703 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6769:37669_1:N:0:CGATGT Contig224520 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6649:38270_1:N:0:CGATGT Contig670177 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11975:38507_1:N:0:CGATGT Contig81493 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10356:39362_1:N:0:CGATGT Contig267885 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14001:39311_1:N:0:CGATGT Contig321491 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12894:39759_1:N:0:CGATGT Contig282812 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8130:40683_1:N:0:CGATGT Contig181492 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6332:40901_1:N:0:CGATGT Contig277889 142 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5941:42352_1:N:0:CGATGC Contig594240 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16927:44205_1:N:0:CGATGT Contig108449 1169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4586:45878_1:N:0:CGATGT Contig138148 822 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21132:46531_1:N:0:CGATGT Contig622798 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8544:47849_1:N:0:CGATGT Contig59667 9630 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17871:49209_1:N:0:CGATGT Contig525422 329 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3467:51282_1:N:0:CGATGT Contig241113 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13422:52451_1:N:0:CGATGT Contig659317 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5443:54196_1:N:0:CGATGT Contig668722 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18659:54757_1:N:0:CGATGT Contig565844 462 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12054:55641_1:N:0:CGATGT Contig288558 1165 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9529:56252_1:N:0:CGATGT Contig279673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15865:57286_1:N:0:CGATGT Contig107152 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4726:58381_1:N:0:CGATGT Contig536932 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15508:58791_1:N:0:CGATGT Contig600125 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21138:59226_1:N:0:CGATGT Contig340642 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10375:59921_1:N:0:CGATGT Contig579591 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3089:62122_1:N:0:CGATGT Contig28864 27255 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4183:62684_1:N:0:CGATGT Contig216355 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16218:65295_1:N:0:CGATGT Contig474461 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1189:65530_1:N:0:CGATGT Contig397146 363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1160:67248_1:N:0:CGATGT Contig61252 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15775:68765_1:N:0:CGATGT Contig418019 202 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20014:70252_1:N:0:CGATGT Contig166456 730 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16666:70954_1:N:0:CGATGT Contig141690 1245 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18462:70780_1:N:0:CGATGT Contig420610 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3210:71877_1:N:0:CGATGT Contig368268 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17294:72561_1:N:0:CGATGT Contig46469 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6400:75020_1:N:0:CGATGT Contig601866 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6779:76647_1:N:0:CGATGT Contig551859 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7073:76928_1:N:0:CGATGT Contig605214 121 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12159:77043_1:N:0:CGATGT Contig48997 34081 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17141:77163_1:N:0:CGATGT Contig121448 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4182:77788_1:N:0:CGATGT Contig382759 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15688:78991_1:N:0:CGATGT Contig63990 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13355:80982_1:N:0:CGATGT Contig333917 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1103:82074_1:N:0:CGATGT Contig165125 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21112:82247_1:N:0:CGATGT Contig573096 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17791:82295_1:N:0:CGATGT Contig84752 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12249:82655_1:N:0:CGATGT Contig113133 1412 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5003:83822_1:N:0:CGATGT Contig158250 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17257:84535_1:N:0:CGATGT Contig556038 409 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13996:85497_1:N:0:CGATGT Contig36213 43292 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17491:86016_1:N:0:CGATGT Contig218980 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20638:86067_1:N:0:CGATGT Contig387289 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4840:87589_1:N:0:CGATGT Contig7833 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9187:90796_1:N:0:CGATGT Contig396501 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4142:91805_1:N:0:CGATGT Contig549480 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4095:93303_1:N:0:CGATGT Contig225560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14277:93362_1:N:0:CGATGT Contig271437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11366:94209_1:N:0:CGATGT Contig136803 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9533:96794_1:N:0:CGATGT Contig111597 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5070:98216_1:N:0:CGATGT Contig657184 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15537:101000_1:N:0:CGATGT Contig679507 189 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1447:2862_1:N:0:CGATGT Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17468:4301_1:N:0:CGATGT Contig463006 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5574:4889_1:N:0:CGATGT Contig210378 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7676:5561_1:N:0:CGATGT Contig236325 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9812:5540_1:N:0:CGATGT Contig371017 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19439:5930_1:N:0:CGATGT Contig543309 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14158:6533_1:N:0:CGATGT Contig164539 739 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2894:7955_1:N:0:CGATGT Contig542746 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4465:7862_1:N:0:CGATGT Contig287817 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4496:7883_1:N:0:CGATGT Contig287817 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4465:7903_1:N:0:CGATGT Contig287817 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19957:8268_1:N:0:CGATGT Contig91984 1491 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7905:9518_1:N:0:CGATGT Contig183189 607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2147:9785_1:N:0:CGATGT Contig428748 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17053:10678_1:N:0:CGATGT Contig234001 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14165:11305_1:N:0:CGATGT Contig383077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2022:13567_1:N:0:CGATGT Contig380042 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5240:14242_1:N:0:CGATGT Contig376171 299 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18810:16314_1:N:0:CGATGT Contig177874 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2646:20059_1:N:0:CGATGT Contig645455 578 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18303:22347_1:N:0:CGATGT Contig417636 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1201:24737_1:N:0:CGATGT Contig406779 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6469:25060_1:N:0:CGATGT Contig342405 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11809:25498_1:N:0:CGATGT Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14039:28005_1:N:0:CGATGT Contig379249 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10898:28938_1:N:0:CGATGT Contig271136 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5887:29628_1:N:0:CGATGT Contig537341 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9503:34415_1:N:0:CGATGT Contig146877 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17706:34300_1:N:0:CGATGT Contig299960 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6218:35743_1:N:0:CGATGT Contig79305 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14128:37156_1:N:0:CGATGT Contig203279 847 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7805:38755_1:N:0:CGATGT Contig615795 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3355:39109_1:N:0:CGATGT Contig440005 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17035:44233_1:N:0:CGATGT Contig512300 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16133:46567_1:N:0:CGATGT Contig298950 271 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10374:47400_1:N:0:CGATGT Contig289669 367 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16650:48919_1:N:0:CGATGT Contig22197 6039 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16785:49282_1:N:0:CGATGT Contig313675 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17399:51016_1:N:0:CGATGT Contig16324 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8117:53659_1:N:0:CGATGT Contig561977 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14254:54495_1:N:0:CGATGT Contig343303 185 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17388:55578_1:N:0:CGATGT Contig275407 184 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5301:55759_1:N:0:CGATGT Contig536185 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16157:56123_1:N:0:CGATGT Contig52820 12646 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14488:56568_1:N:0:CGATGT Contig569051 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11219:60226_1:N:0:CGATGT Contig28913 2787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17785:60105_1:N:0:CGATGT Contig297835 141 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13719:61249_1:N:0:CGATGT Contig665672 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2119:63096_1:N:0:CGATGT Contig585321 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5168:65409_1:N:0:CGATGT Contig243625 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11351:65492_1:N:0:CGATGT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18916:66150_1:N:0:CGATGT Contig327554 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1874:66894_1:N:0:CGATGT Contig330338 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20632:66861_1:N:0:CGATGT Contig16849 12309 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2154:68957_1:N:0:CGATGT Contig596429 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12164:68979_1:N:0:CGATGT Contig165102 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16756:70354_1:N:0:CGATGT Contig248441 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3375:70728_1:N:0:CGATGT Contig273068 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9651:72063_1:N:0:CGATGT Contig245735 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11569:73209_1:N:0:CGATGT Contig508610 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5975:73744_1:N:0:CGATGT Contig422060 194 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1377:76963_1:N:0:CGATGT Contig533263 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11005:77440_1:N:0:CGATGT Contig174064 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16502:77379_1:N:0:CGATGT Contig574431 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7446:81554_1:N:0:CGATGT Contig646713 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10590:81518_1:N:0:CGATGT Contig662769 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20431:81920_1:N:0:CGATGT Contig205088 825 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1232:83392_1:N:0:CGATGT Contig4671 11395 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12137:87649_1:N:0:CGATGT Contig149883 4023 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13669:88727_1:N:0:CGATGT Contig575772 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12305:89009_1:N:0:CGATGT Contig206982 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12169:90623_1:N:0:CGATGT Contig205212 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5303:91476_1:N:0:CGATGT Contig556038 407 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5673:91363_1:N:0:CGATGT Contig660750 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4731:92154_1:N:0:CGATGT Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11143:92735_1:N:0:CGATGT Contig145309 3210 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6845:93760_1:N:0:CGATGT Contig11785 174 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15035:94371_1:N:0:CGATGT Contig319929 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7907:96921_1:N:0:CGATGT Contig201640 420 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4040:99099_1:N:0:CGATGT Contig661099 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4664:99067_1:N:0:CGATGT Contig267041 150 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10057:99893_1:N:0:CGATGT Contig108449 1169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18569:100201_1:N:0:CGATGT Contig410657 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13561:3838_1:N:0:CGATGT Contig213426 7245 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15720:7792_1:N:0:CGATGT Contig346842 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6601:10197_1:N:0:CGATGT Contig299365 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14487:12744_1:N:0:CGATGT Contig218578 446 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9832:14802_1:N:0:CGATGT Contig671433 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18778:15494_1:N:0:CGATGT Contig293433 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2912:15581_1:N:0:CGATGT Contig671884 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4615:16814_1:N:0:CGATGT Contig350123 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3362:18490_1:N:0:CGATGT Contig89586 1068 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9905:19451_1:N:0:CGATGT Contig641690 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5757:20443_1:N:0:CGATGT Contig135488 2214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21224:20322_1:N:0:CGATGT Contig589599 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13343:20974_1:N:0:CGATGT Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7701:21839_1:N:0:CGATGT Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4322:22056_1:N:0:CGATGT Contig252927 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13637:22018_1:N:0:CGATGT Contig367550 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14642:22878_1:N:0:CGATGT Contig363076 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14315:23452_1:N:0:CGATGT Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5611:23544_1:N:0:CGATGT Contig154943 771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5599:23577_1:N:0:CGATGT Contig154943 771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16112:23673_1:N:0:CGATGT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4735:24159_1:N:0:CGATGT Contig583767 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12089:24965_1:N:0:CGATGT Contig63078 8606 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17660:25066_1:N:0:CGATGT Contig12277 218 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18445:26453_1:N:0:CGATGT Contig642647 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18787:26829_1:N:0:CGATGT Contig258423 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3841:28689_1:N:0:CGATGT Contig572941 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15877:28559_1:N:0:CGATGT Contig10151 1979 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6376:28793_1:N:0:CGATGT Contig87676 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20406:29121_1:N:0:CGATGT Contig607134 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8454:29827_1:N:0:CGATGT Contig58406 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8828:32156_1:N:0:CGATGT Contig235362 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8563:33737_1:N:0:CGATGT Contig56875 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12684:34221_1:N:0:CGATGT Contig351256 129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4647:35600_1:N:0:CGATGT Contig77043 2598 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13823:38273_1:N:0:CGATGT Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18040:39279_1:N:0:CGATGT Contig199610 756 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18077:39294_1:N:0:CGATGT Contig199610 756 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8110:40453_1:N:0:CGATGT Contig222128 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20484:41037_1:N:0:CGATGT Contig452192 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3491:42174_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12719:42052_1:N:0:CGATGT Contig357869 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11035:42925_1:N:0:CGATGT Contig50320 19246 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15255:43690_1:N:0:CGATGT Contig135495 1650 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17228:44626_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20188:46802_1:N:0:CGATGT Contig527538 149 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4206:50449_1:N:0:CGATGT Contig166447 712 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6011:50674_1:N:0:CGATGT Contig290221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5467:54003_1:N:0:CGATGT Contig360581 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1763:54358_1:N:0:CGATGT Contig100960 9393 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17458:55074_1:N:0:CGATGT Contig10151 1981 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18983:56349_1:N:0:CGATGT Contig244947 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5032:57195_1:N:0:CGATGT Contig441527 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5073:57379_1:N:0:CGATGT Contig322856 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16524:57870_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15522:58236_1:N:0:CGATGT Contig263754 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17822:59106_1:N:0:CGATTT Contig341236 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21039:60176_1:N:0:CGATGT Contig512468 4704 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15967:61244_1:N:0:CGATGT Contig129461 2286 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16464:62977_1:N:0:CGATGT Contig371521 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19706:62879_1:N:0:CGATGA Contig15438 385 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5213:64301_1:N:0:CGATGT Contig684219 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12821:65757_1:N:0:CGATGT Contig187556 736 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6264:67496_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1986:67629_1:N:0:CGATGT Contig371982 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10392:71908_1:N:0:CGATGT Contig391203 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10407:71941_1:N:0:CGATGT Contig391203 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19014:71811_1:N:0:CGATGT Contig197257 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11515:72821_1:N:0:CGATGT Contig579354 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19422:73277_1:N:0:CGATGT Contig328797 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1413:74720_1:N:0:CGATGT Contig176386 464 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7602:76656_1:N:0:CGATGT Contig411073 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15922:80521_1:N:0:CGATGT Contig335108 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9019:82235_1:N:0:CGATGT Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5072:83230_1:N:0:CGATGT Contig36263 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1152:83909_1:N:0:CGATGT Contig88007 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9951:83830_1:N:0:CGATGT Contig15656 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6401:86063_1:N:0:CGATGT Contig609188 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20892:86213_1:N:0:CGATGT Contig265711 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20704:87984_1:N:0:CGATGT Contig363124 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15557:88261_1:N:0:CGATGT Contig285851 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6887:89364_1:N:0:CGATGT Contig679613 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19524:91027_1:N:0:CGATGT Contig351188 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14596:92289_1:N:0:CGATGT Contig108449 1170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1185:93301_1:N:0:CGATGT Contig109947 2284 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14725:94627_1:N:0:CGATGT Contig152558 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9647:94896_1:N:0:CGATGT Contig193747 509 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18083:97836_1:N:0:CGAAGT Contig205529 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6831:98779_1:N:0:CGATGT Contig229260 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21046:99472_1:N:0:CGATGT Contig90954 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17501:100378_1:N:0:CGATGT Contig421515 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10732:100973_1:N:0:CGATGT Contig423609 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20395:4729_1:N:0:CGATGT Contig481919 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7002:5017_1:N:0:CGATGT Contig572994 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10319:5091_1:N:0:CGATGT Contig552207 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5156:5534_1:N:0:GGATGT Contig107729 980 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6499:6782_1:N:0:CGATGT Contig511581 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7378:7195_1:N:0:CGATGT Contig148531 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5135:7844_1:N:0:CGATGT Contig146049 392 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3204:8609_1:N:0:CGATGT Contig345073 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15060:9988_1:N:0:CGATGT Contig81239 2277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16209:10117_1:N:0:CGATGT Contig164003 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12155:10392_1:N:0:CGATGT Contig49104 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15564:11523_1:N:0:CGATGT Contig74793 2537 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8892:12028_1:N:0:CGATGT Contig467912 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13124:14783_1:N:0:CGATGT Contig140091 729 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7705:17383_1:N:0:CGATGT Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18723:17570_1:N:0:CGATGT Contig64084 484 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10541:19022_1:N:0:CGATGT Contig667548 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17328:20361_1:N:0:CGATGT Contig222624 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17016:21092_1:N:0:CGATGT Contig450017 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5877:24730_1:N:0:CGATGT Contig637260 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10825:24558_1:N:0:CGATGT Contig37039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14559:25595_1:N:0:CGATGT Contig584847 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16484:25909_1:N:0:CGATGT Contig184175 3925 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12957:27503_1:N:0:CGATGT Contig124071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19243:28077_1:N:0:CGATGT Contig110928 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9946:29550_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19296:31060_1:N:0:CGATGT Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21241:32313_1:N:0:CGATGT Contig175345 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15957:32651_1:N:0:CGATGT Contig393387 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2887:32956_1:N:0:CGATGT Contig64718 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19563:33173_1:N:0:CGATGT Contig215132 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15189:33826_1:N:0:CGATGT Contig5289 6359 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2946:34481_1:N:0:CGATGT Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4188:35930_1:N:0:CGATGT Contig568374 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20948:36139_1:N:0:CGATGT Contig126253 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17364:36403_1:N:0:CGATGT Contig481475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4122:37364_1:N:0:CGATGT Contig447612 403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7578:37297_1:N:0:CGATGT Contig561509 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14680:37594_1:N:0:CGATGT Contig488183 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18553:40664_1:N:0:CGATGT Contig11769 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16984:41284_1:N:0:CGATGT Contig244309 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20573:41836_1:N:0:CGATGT Contig576570 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18112:42316_1:N:0:CGATGT Contig159106 1269 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6315:46473_1:N:0:CGATGT Contig556672 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6496:48747_1:N:0:CGATGT Contig571869 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3096:49724_1:N:0:CGATGT Contig96647 2924 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2120:49934_1:N:0:CGATGT Contig56020 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8383:49843_1:N:0:CGATGT Contig485270 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12370:50939_1:N:0:CGATGT Contig50798 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19820:52652_1:N:0:CGATGT Contig615365 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19109:54437_1:N:0:CGATGT Contig620133 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6449:57566_1:N:0:CGATGT Contig521979 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11040:59936_1:N:0:CGATGT Contig352939 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11479:60086_1:N:0:CGATGT Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12176:62381_1:N:0:CGATGT Contig556672 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17005:64009_1:N:0:CGATGT Contig449948 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5333:66189_1:N:0:CGATGT Contig679613 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5133:66826_1:N:0:CGATGT Contig382515 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14769:66926_1:N:0:CGATGT Contig111553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10767:71233_1:N:0:CGATGT Contig66412 2498 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9635:73397_1:N:0:CGATGT Contig51473 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6830:74743_1:N:0:CGATGT Contig69735 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16139:75753_1:N:0:CGATGT Contig457548 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11200:76010_1:N:0:CGATGT Contig66788 11500 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7815:77188_1:N:0:CGATGT Contig16135 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3526:77550_1:N:0:CGATGT Contig31360 38607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6409:78444_1:N:0:CGATGT Contig26636 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17483:79034_1:N:0:CGATGT Contig362048 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5901:79471_1:N:0:CGATGT Contig76342 15825 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14530:80406_1:N:0:CGATGT Contig180011 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7038:82364_1:N:0:CGATGT Contig458609 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17495:82520_1:N:0:CGATGT Contig609703 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1400:83051_1:N:0:CGATGT Contig490291 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18312:83805_1:N:0:CGATGT Contig22993 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10931:84585_1:N:0:CGATGT Contig241970 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5121:85433_1:N:0:CGATGT Contig92320 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10589:85340_1:N:0:CGATGT Contig20863 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18269:85810_1:N:0:CGATGT Contig23411 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11298:86157_1:N:0:CGATGT Contig116662 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20543:86882_1:N:0:CGATGT Contig165074 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14839:87761_1:N:0:CGATGT Contig207539 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11278:89342_1:N:0:CGATGT Contig551582 270 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17691:90728_1:N:0:CGATGT Contig632284 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14107:90880_1:N:0:CGATGT Contig333156 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2412:92192_1:N:0:CGATGT Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2398:92911_1:N:0:CGATGT Contig639335 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14952:92985_1:N:0:CGATGT Contig63084 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1159:96343_1:N:0:CGATGT Contig3684 8963 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11414:96647_1:N:0:CGATGT Contig531876 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16740:97473_1:N:0:CGATGT Contig615419 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10421:99793_1:N:0:CGATGT Contig384085 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1869:100006_1:N:0:CGATGT Contig45395 31218 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15515:100027_1:N:0:CGATGT Contig526302 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7066:100292_1:N:0:CGATGT Contig424115 199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14388:2460_1:N:0:CGATGT Contig583874 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20107:2905_1:N:0:CGATGT Contig572941 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4096:3641_1:N:0:CGATGT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5050:4926_1:N:0:CGATGT Contig35839 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12840:7707_1:N:0:CGATGT Contig440263 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7506:8935_1:N:0:CGATGT Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12163:8780_1:N:0:CGATGT Contig362597 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20662:11193_1:N:0:CGATGT Contig687343 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2294:11484_1:N:0:CGATGT Contig85159 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6735:11693_1:N:0:CGATGT Contig489961 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11893:11921_1:N:0:CGATGT Contig127528 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10160:12686_1:N:0:CGATGT Contig130518 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6868:13085_1:N:0:CGATGT Contig16736 3287 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11230:13255_1:N:0:CGATGT Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2292:13622_1:N:0:CGATGT Contig277489 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20036:14598_1:N:0:CGATGT Contig205286 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9287:14986_1:N:0:CGATGT Contig279673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6003:16929_1:N:0:CGATGT Contig549805 253 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13449:17976_1:N:0:CGATGT Contig143225 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11245:18967_1:N:0:CGATGT Contig165074 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18399:19116_1:N:0:CGATGT Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17971:20162_1:N:0:CGATGT Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4826:21494_1:N:0:CGATGT Contig159488 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5101:21654_1:N:0:CGATGT Contig114129 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6191:22062_1:N:0:CGATGT Contig338905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10652:22484_1:N:0:CGATGT Contig168413 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14978:22965_1:N:0:CGATGT Contig33186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19799:22765_1:N:0:CGATGT Contig277964 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5626:24074_1:N:0:CGATGT Contig24643 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8937:24553_1:N:0:CGATGT Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2436:24969_1:N:0:CGATGT Contig125721 3257 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21209:26055_1:N:0:CGATGT Contig83218 7103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20667:27254_1:N:0:CGATGT Contig100960 9394 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12890:28618_1:N:0:CGATGT Contig37235 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1644:29764_1:N:0:CGATGA Contig54892 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10711:29858_1:N:0:CGATGT Contig547388 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20013:29895_1:N:0:CGATGT Contig262188 1913 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20077:29908_1:N:0:CGATGT Contig439555 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20255:29760_1:N:0:CGATGT Contig604698 118 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15943:32136_1:N:0:CGATGT Contig93308 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8504:32961_1:N:0:CGATGT Contig367342 189 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9359:34127_1:N:0:CGATGT Contig29050 13759 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4178:34863_1:N:0:CGATGT Contig445780 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19641:36051_1:N:0:CGATGT Contig373510 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7945:36896_1:N:0:CGATGT Contig31085 14933 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3336:37822_1:N:0:CGATGT Contig79146 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6616:40060_1:N:0:CGATGT Contig176314 832 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17724:40131_1:N:0:CGATGT Contig307018 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2995:40660_1:N:0:CGATGT Contig290117 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12160:42469_1:N:0:CGATGT Contig225359 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7984:42508_1:N:0:CGATGT Contig79309 2453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15641:43946_1:N:0:CGATGT Contig253398 236 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7313:45306_1:N:0:CGATGT Contig76313 19089 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9357:45587_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20928:48941_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20669:49706_1:N:0:CGATGT Contig479758 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1496:50899_1:N:0:CGATGT Contig626070 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10497:51851_1:N:0:CGATGT Contig16398 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4352:53743_1:N:0:CGATGT Contig141835 3667 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18351:54607_1:N:0:CGATGT Contig407487 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11362:55480_1:N:0:CGATGT Contig377985 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4957:55610_1:N:0:CGATGT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10337:56077_1:N:0:CGATGT Contig9580 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1172:60163_1:N:0:CGATGT Contig136298 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5787:61049_1:N:0:CGATGT Contig339390 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2582:62977_1:N:0:CGATGT Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9287:62753_1:N:0:CGATGT Contig334859 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13126:71941_1:N:0:CGATGT Contig658345 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17325:72298_1:N:0:CGATGT Contig282780 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4428:73738_1:N:0:CGATGT Contig38185 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15833:74631_1:N:0:CGATGT Contig505247 177 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20837:75564_1:N:0:CGATGT Contig555354 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21115:76153_1:N:0:CGATGT Contig122733 778 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2313:81303_1:N:0:CGATGT Contig218693 459 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21150:81918_1:N:0:CGATGT Contig575589 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19812:83235_1:N:0:CGATGT Contig39396 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4782:83368_1:N:0:CGATGT Contig447369 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3786:83703_1:N:0:CGATGT Contig487894 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3655:84689_1:N:0:CGATGT Contig371406 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15223:85439_1:N:0:CGATGT Contig50320 19245 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20530:87091_1:N:0:CGATGT Contig250907 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3776:87395_1:N:0:CGAGGT Contig524673 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7210:87378_1:N:0:CGATGT Contig512821 482 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10610:90490_1:N:0:CGATGT Contig79057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13159:94259_1:N:0:CGATGT Contig52673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11527:95198_1:N:0:CGATGT Contig674123 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16749:95126_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7072:95519_1:N:0:CGATGT Contig67821 3136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1752:96036_1:N:0:CGATGT Contig657875 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13773:96387_1:N:0:CGATGT Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15109:97954_1:N:0:CGATGT Contig366879 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17456:98473_1:N:0:CGATGT Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18576:98934_1:N:0:CGATGT Contig389111 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3464:2673_1:N:0:CGATGT Contig92686 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10500:3114_1:N:0:CGATGT Contig67821 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15561:3640_1:N:0:CGATGT Contig564770 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1815:4316_1:N:0:CGATGT Contig542642 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6619:5478_1:N:0:CGATGT Contig486659 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15039:7691_1:N:0:CGATGT Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1729:8361_1:N:0:CGATGT Contig145807 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3816:9855_1:N:0:CGATGT Contig126754 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15884:10398_1:N:0:CGATGT Contig3459 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8947:11565_1:N:0:CGATGT Contig585966 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10319:12230_1:N:0:CGATGT Contig297976 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1979:12450_1:N:0:CGATGT Contig360201 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15671:13268_1:N:0:CGATGT Contig530378 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2536:14109_1:N:0:CGATGT Contig268099 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10580:16141_1:N:0:CGATGT Contig626070 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4307:17389_1:N:0:CGATGT Contig336119 188 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11181:19761_1:N:0:CGATGT Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11738:21883_1:N:0:CGATGT Contig66163 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10246:22349_1:N:0:CGATGT Contig279673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17534:23871_1:N:0:CGATGT Contig670368 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10363:24317_1:N:0:CGATGT Contig52530 14128 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12948:24481_1:N:0:CGATGT Contig509432 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18212:24593_1:N:0:CGATGT Contig112110 4071 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3570:25185_1:N:0:CGATGT Contig143583 4038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8668:25529_1:N:0:CGATGA Contig274543 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5625:26291_1:N:0:CGATGT Contig444636 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13248:27090_1:N:0:CGATGT Contig521501 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15380:28002_1:N:0:CGATGT Contig67554 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5904:28957_1:N:0:CGATGT Contig475499 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17544:29359_1:N:0:CGATGT Contig608148 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19349:30331_1:N:0:CGATGT Contig491737 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4672:30913_1:N:0:CGATGT Contig141825 751 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5268:33191_1:N:0:CGATGT Contig47680 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16204:33124_1:N:0:CGATGT Contig109913 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2722:35175_1:N:0:CGATGT Contig105623 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1279:35439_1:N:0:CGATGT Contig59947 3805 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15147:35701_1:N:0:CGATGT Contig54452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10285:37092_1:N:0:CGATGT Contig568374 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8983:38129_1:N:0:CGATGT Contig417 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8018:38601_1:N:0:CGATGT Contig393446 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14753:39136_1:N:0:CGATGT Contig425720 162 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2589:39265_1:N:0:CGATGT Contig683689 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11145:41010_1:N:0:CGATGT Contig5974 8404 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19220:42470_1:N:0:CGATGT Contig312272 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3270:44232_1:N:0:CGATGT Contig88851 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14663:45415_1:N:0:CGATGT Contig656981 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13802:45876_1:N:0:CGATGT Contig201993 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14608:46380_1:N:0:CGATGT Contig243636 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15533:46480_1:N:0:CGATGT Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17558:49180_1:N:0:CGATGT Contig334209 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3287:51926_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20256:52388_1:N:0:CGATGT Contig403800 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7067:52908_1:N:0:CGATGT Contig481475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7139:53461_1:N:0:CGATGT Contig21071 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15319:53320_1:N:0:CGATGT Contig134742 3193 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16255:53397_1:N:0:CGATGT Contig449600 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9775:54687_1:N:0:CGATGT Contig92070 2097 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17885:54690_1:N:0:CGATGT Contig145069 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2375:55090_1:N:0:CGATGT Contig440638 213 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18509:55877_1:N:0:CGATGT Contig175238 982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12617:56340_1:N:0:CGATGT Contig102858 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10193:56914_1:N:0:CGATGT Contig64902 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2628:58356_1:N:0:CGATGT Contig274666 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12249:58543_1:N:0:CGATGT Contig370881 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1263:59303_1:N:0:CGATGT Contig695691 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8881:60152_1:N:0:CGATGT Contig181140 1031 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11568:61017_1:N:0:CGATGT Contig552736 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11075:62221_1:N:0:CGATGT Contig565198 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9365:65243_1:N:0:CGATGT Contig512497 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6443:66172_1:N:0:CGATGT Contig650985 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17937:66177_1:N:0:CGATGT Contig310256 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4411:68432_1:N:0:CGATGT Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11061:68453_1:N:0:CGATGT Contig426130 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2568:68554_1:N:0:CGAAGT Contig467791 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18450:68873_1:N:0:CGATGT Contig502281 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2094:69439_1:N:0:CGATGT Contig226203 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16551:70533_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9391:71178_1:N:0:CGATGT Contig35932 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18213:71311_1:N:0:CGATGT Contig305045 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1524:72243_1:N:0:CGATGT Contig298950 271 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19479:72019_1:N:0:CGATGT Contig542890 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6079:75238_1:N:0:CGATGT Contig678828 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17505:76045_1:N:0:CGATGT Contig643741 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20610:76626_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10270:77889_1:N:0:CGATGT Contig322856 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9440:79607_1:N:0:CGATGT Contig296274 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13744:79891_1:N:0:CGATGT Contig322890 229 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12920:81773_1:N:0:CGATGT Contig309585 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12116:82115_1:N:0:CGATGT Contig277135 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5263:82868_1:N:0:CGATGT Contig212132 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18686:83334_1:N:0:CGATGT Contig246676 164 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6729:83613_1:N:0:CGATGT Contig445780 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5374:84433_1:N:0:CGATGT Contig382515 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21145:85402_1:N:0:CGATGT Contig679613 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14729:85654_1:N:0:CGATGT Contig197017 509 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3391:86126_1:N:0:CGATGT Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15447:86663_1:N:0:CGATGT Contig661863 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18377:86514_1:N:0:CGATGT Contig622364 1180 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9164:86928_1:N:0:CGATGT Contig407379 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12052:87776_1:N:0:CGATGT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3644:88432_1:N:0:CGATGC Contig53023 9204 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4592:90743_1:N:0:CGATGT Contig255772 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12770:90915_1:N:0:CGATGT Contig111553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9766:91023_1:N:0:CGATGT Contig130389 2451 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19088:91202_1:N:0:CGATGT Contig382081 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17781:92763_1:N:0:CGATGT Contig106927 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4335:93504_1:N:0:CGATGT Contig452484 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13533:94078_1:N:0:CGATGT Contig573277 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17630:94614_1:N:0:CGATGT Contig147186 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3558:95996_1:N:0:CGATGT Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11202:97958_1:N:0:CGATGT Contig233955 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1791:98486_1:N:0:CGATGT Contig532781 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14273:98677_1:N:0:CGATGT Contig690973 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3996:99148_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2956:99628_1:N:0:CGATGT Contig146131 1132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19043:99737_1:N:0:CGATGT Contig346782 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2673:100742_1:N:0:CGACGT Contig670368 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20744:3505_1:N:0:CGATGT Contig672266 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10810:6681_1:N:0:CGATGT Contig270296 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13386:6903_1:N:0:CGATGT Contig497550 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3397:7350_1:N:0:CGATGT Contig73219 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17587:9111_1:N:0:CGATGT Contig197442 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3723:9884_1:N:0:CGATGT Contig208562 702 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15072:9909_1:N:0:CGATGT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16212:10182_1:N:0:CGATGT Contig533847 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11584:11286_1:N:0:CGATGT Contig15345 1082 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17070:13766_1:N:0:CGATGT Contig359627 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2060:14459_1:N:0:CGATGT Contig456187 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4335:14371_1:N:0:CGATGT Contig645289 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3316:16127_1:N:0:CGATGT Contig488185 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1907:17544_1:N:0:CGATGT Contig373353 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2673:17501_1:N:0:CGATGT Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3278:18178_1:N:0:CGATGT Contig696262 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12451:19632_1:N:0:CGATGT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18202:19545_1:N:0:CGATGT Contig431398 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4976:20201_1:N:0:CGATGT Contig282855 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5496:21206_1:N:0:CGATGT Contig249933 1866 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2038:21778_1:N:0:CGATGT Contig32293 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11260:23958_1:N:0:CGATGT Contig119155 26788 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11368:25287_1:N:0:CGATGT Contig51467 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2965:26295_1:N:0:CGATGT Contig254790 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14954:27244_1:N:0:CGATGT Contig126564 1716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9776:32098_1:N:0:CGATGT Contig298921 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13965:32482_1:N:0:CGATGT Contig625184 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13323:33314_1:N:0:CGATGT Contig135766 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15492:34889_1:N:0:CGATGT Contig310256 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2043:38211_1:N:0:CGATGT Contig468658 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10783:39921_1:N:0:CGATGT Contig560873 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19550:40264_1:N:0:CGATGT Contig351666 309 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8406:41408_1:N:0:CGATGT Contig345136 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15295:41735_1:N:0:CGATGT Contig89397 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13584:42924_1:N:0:CGATGT Contig136662 1038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11993:43800_1:N:0:CGATGT Contig558855 120 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4785:44365_1:N:0:CGATGT Contig158505 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3674:44644_1:N:0:CGATGT Contig5332 12401 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6118:46865_1:N:0:CGATGT Contig621061 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5219:48680_1:N:0:CGATGT Contig217677 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18743:48549_1:N:0:CGATGT Contig500563 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11036:49398_1:N:0:CGATGT Contig406952 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16658:50616_1:N:0:CGATGT Contig618226 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20844:52297_1:N:0:CGATGT Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2765:53229_1:N:0:CGATGT Contig141825 751 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19081:53615_1:N:0:CGATGT Contig213442 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19430:55072_1:N:0:CGATGT Contig149883 4021 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7559:55413_1:N:0:CGATGT Contig646732 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17846:58327_1:N:0:CGATGT Contig258175 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8215:59088_1:N:0:CGATGT Contig252639 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10088:59211_1:N:0:CGATGT Contig526833 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11063:59817_1:N:0:CGATGT Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15639:61707_1:N:0:CGATGT Contig110194 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19193:63513_1:N:0:CGATGT Contig667066 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16328:65204_1:N:0:CGATGT Contig312177 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11325:65967_1:N:0:CGATGT Contig647407 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17341:67868_1:N:0:CGATGT Contig650299 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11830:69143_1:N:0:CGATGT Contig101135 7140 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13814:70942_1:N:0:CGATGT Contig225546 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20738:72598_1:N:0:CGATGT Contig38042 3697 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20109:72953_1:N:0:CGATGT Contig509274 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4625:73767_1:N:0:CGATGT Contig559860 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16982:74053_1:N:0:CGATGT Contig211468 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12362:75561_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19307:75628_1:N:0:CGATGT Contig412774 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13947:76002_1:N:0:CGATGT Contig487566 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1709:77409_1:N:0:CGATGT Contig178537 523 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1290:78639_1:N:0:CGATGT Contig578008 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12154:81263_1:N:0:CGATGT Contig422690 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3362:81657_1:N:0:CGATGT Contig497287 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19106:82266_1:N:0:CGATGT Contig672214 570 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19844:83082_1:N:0:CGATGT Contig218578 446 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7358:84326_1:N:0:CGATGT Contig398864 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15574:84871_1:N:0:CGATGT Contig222869 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7893:87595_1:N:0:CGATGT Contig204018 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6645:91431_1:N:0:CGATGT Contig671175 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10946:91490_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1671:91573_1:N:0:CGATGT Contig170554 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15288:92260_1:N:0:CGATGT Contig129062 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16109:92404_1:N:0:CGATGT Contig261705 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19721:93292_1:N:0:CGATGT Contig168888 795 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16745:98988_1:N:0:CGATGT Contig25 92794 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20145:98770_1:N:0:CGATGT Contig629652 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11678:100724_1:N:0:CGATGT Contig223247 6771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15833:100556_1:N:0:CGATGT Contig608213 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13204:100985_1:N:0:CGAAGT Contig491386 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7404:2256_1:N:0:CGATGT Contig152050 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7835:2704_1:N:0:CGATGT Contig76964 2048 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2492:4527_1:N:0:CGATGT Contig416546 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13778:5273_1:N:0:CGATGT Contig46299 11131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11926:5981_1:N:0:CGAAGT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15664:5789_1:N:0:CGATGT Contig578992 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5663:6162_1:N:0:CGATGT Contig218474 504 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4496:6691_1:N:0:CGATGT Contig218333 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5410:6513_1:N:0:CGATGT Contig61328 7315 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20358:7094_1:N:0:CGATGT Contig529065 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18704:7896_1:N:0:CGATGT Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10089:8026_1:N:0:CGATGT Contig668602 515 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3099:8344_1:N:0:CGATGT Contig606672 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17245:9739_1:N:0:CAATGT Contig439156 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17136:10393_1:N:0:CGATGT Contig651031 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12814:12156_1:N:0:CGATGT Contig167884 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12905:12829_1:N:0:CGATGT Contig61589 13323 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11982:15409_1:N:0:CGATGT Contig195665 467 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1243:16239_1:N:0:CGATGT Contig290008 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10098:16223_1:N:0:CGATGT Contig576713 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14761:16622_1:N:0:CGATGT Contig37842 35921 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20174:16869_1:N:0:CGATGT Contig24030 11403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4753:17037_1:N:0:CGATGT Contig98831 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13817:21923_1:N:0:CGATGT Contig185522 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13492:22079_1:N:0:CGATGT Contig179813 400 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9261:22824_1:N:0:CGATGT Contig417182 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20489:26100_1:N:0:CGATGT Contig633970 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9102:28124_1:N:0:CGATGT Contig19140 10460 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6235:30436_1:N:0:CGATGT Contig51851 912 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14806:30866_1:N:0:CGATGT Contig181954 890 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6053:31625_1:N:0:CGATGT Contig383732 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9221:32480_1:N:0:CGATGT Contig516151 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8622:32700_1:N:0:CGATGT Contig94742 8680 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2472:33088_1:N:0:CGATGT Contig91624 8987 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18705:33034_1:N:0:CGATGT Contig98115 9838 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3442:33427_1:N:0:CGATGT Contig248355 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17687:34566_1:N:0:CGATGT Contig270031 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12344:35809_1:N:0:CGATGT Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19064:40574_1:N:0:CGATGT Contig481575 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6084:41371_1:N:0:CGATGT Contig497925 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15892:41355_1:N:0:CGATGT Contig428061 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15200:42478_1:N:0:CGATGT Contig459890 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10217:42538_1:N:0:CGATGT Contig287273 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7285:43566_1:N:0:CGATGT Contig203102 505 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13965:44212_1:N:0:CGATGT Contig196877 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7116:44688_1:N:0:CGATGT Contig502099 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11872:45411_1:N:0:CGATGT Contig239957 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4785:45784_1:N:0:CGATGT Contig149493 1194 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4737:46347_1:N:0:CGATGT Contig450934 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12733:48131_1:N:0:CGATGT Contig469863 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19539:49151_1:N:0:CGATGT Contig116775 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13907:51112_1:N:0:CGATGT Contig38952 1543 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5469:52053_1:N:0:CGATGT Contig489967 427 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13609:52848_1:N:0:CGATGT Contig269317 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4757:53541_1:N:0:CGATGT Contig111553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10714:53840_1:N:0:CGATGT Contig653957 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8987:54339_1:N:0:CGATGT Contig513025 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1421:55646_1:N:0:CGATGT Contig165074 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8410:55543_1:N:0:CGATGT Contig28864 27255 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9035:55643_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15779:55651_1:N:0:CGATGT Contig236672 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4431:56107_1:N:0:CGATGT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14215:56299_1:N:0:CGATGT Contig83124 2131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9369:60728_1:N:0:CGATGT Contig123371 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7977:60880_1:N:0:CGATGT Contig94564 2391 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9425:63422_1:N:0:CGATGT Contig43004 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12069:64603_1:N:0:CGATGT Contig181379 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7913:66358_1:N:0:CGATGT Contig265669 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18942:67037_1:N:0:CGATGT Contig541619 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11286:68013_1:N:0:CGATGT Contig168318 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16960:68553_1:N:0:CGATGT Contig219450 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10774:68965_1:N:0:CGATGT Contig426598 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16691:71449_1:N:0:CGATGT Contig456591 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10008:71616_1:N:0:CGATGT Contig450365 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16093:73296_1:N:0:CGATGT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16635:73408_1:N:0:CGATGT Contig77115 3384 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4899:74540_1:N:0:CGATGT Contig533827 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4831:75622_1:N:0:CGATGT Contig238604 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4352:75919_1:N:0:CGATGT Contig335668 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11830:76196_1:N:0:CGATGT Contig134638 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6682:76422_1:N:0:CGATGT Contig392759 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3534:76930_1:N:0:CGATGT Contig488965 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18006:80331_1:N:0:CGATGT Contig57442 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7443:84794_1:N:0:CGATGT Contig189159 7854 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12760:85206_1:N:0:CGATGT Contig187690 750 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16457:86624_1:N:0:CGATGT Contig137089 1039 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8844:87866_1:N:0:CGATGT Contig662118 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4213:88035_1:N:0:CGATGT Contig74916 7867 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15896:89302_1:N:0:CGATGT Contig129205 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9010:89795_1:N:0:CGATGT Contig468225 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1837:90268_1:N:0:CGATGT Contig630807 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18929:92494_1:N:0:CGATGT Contig85861 3248 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7385:96230_1:N:0:CGATGT Contig485540 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4043:96484_1:N:0:CGATGT Contig633476 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7286:97609_1:N:0:CGATGT Contig51452 7800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20921:98056_1:N:0:CGATGT Contig423149 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4345:99292_1:N:0:CGATGT Contig389111 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11235:99488_1:N:0:CGATGT Contig695952 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5916:2863_1:N:0:CGATGT Contig537814 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5045:3990_1:N:0:CGATGT Contig585770 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14509:3813_1:N:0:CGATGT Contig502030 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3325:4928_1:N:0:CGATGT Contig261084 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19399:5508_1:N:0:CGATGT Contig668788 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4620:5948_1:N:0:CGATGT Contig596078 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15449:7430_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7599:8855_1:N:0:CGATGT Contig553880 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10111:9803_1:N:0:CGATGT Contig592335 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19998:9769_1:N:0:CGATGT Contig51545 1945 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13649:10634_1:N:0:CGATGT Contig479049 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8302:12210_1:N:0:CGATGT Contig683091 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20777:13573_1:N:0:CGATGT Contig482678 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5920:15473_1:N:0:CGATGT Contig102113 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3002:16749_1:N:0:CGATGT Contig308788 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1457:16787_1:N:0:CGATGT Contig167884 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20909:18208_1:N:0:CGATGT Contig43910 1277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16935:18406_1:N:0:CGATGT Contig530378 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4444:18520_1:N:0:CGATGT Contig70586 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20806:18751_1:N:0:CGATGT Contig696209 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16755:19071_1:N:0:CGATGT Contig174296 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13310:20628_1:N:0:CGATGT Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19287:21811_1:N:0:CGATGT Contig568374 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14760:22877_1:N:0:CGATGT Contig85962 6906 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10750:23373_1:N:0:CGATGT Contig82400 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10499:23823_1:N:0:CGATGT Contig236604 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15301:24734_1:N:0:CGATGT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18038:24826_1:N:0:CGATGT Contig177606 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14226:27755_1:N:0:CGATGT Contig635415 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1986:30503_1:N:0:CGATGT Contig33104 9808 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6707:32110_1:N:0:CGATGT Contig653957 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16683:32110_1:N:0:CGATGT Contig411564 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12086:32461_1:N:0:CGATGT Contig435226 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9296:36559_1:N:0:CGATGT Contig380239 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14676:37325_1:N:0:CGATGT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17902:37489_1:N:0:CGATGT Contig541926 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1603:37968_1:N:0:CGATGT Contig360581 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11918:38844_1:N:0:CGATGT Contig54452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14705:39975_1:N:0:CGATGT Contig159125 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2111:40058_1:N:0:CGATGT Contig618630 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4941:40172_1:N:0:CGATGT Contig126773 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15313:40400_1:N:0:CGATGT Contig483238 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15179:41143_1:N:0:CGATGT Contig38547 1921 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2439:41679_1:N:0:CGATGT Contig8735 5909 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4921:41784_1:N:0:CGATGT Contig520165 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 784862 (78.49%) aligned 0 times 109921 (10.99%) aligned exactly 1 time 105217 (10.52%) aligned >1 times 21.51% overall alignment rate Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3982:43472_1:N:0:CGATGT Contig158704 1089 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 785807 (78.58%) aligned 0 times 109338 (10.93%) aligned exactly 1 time 104855 (10.49%) aligned >1 times 21.42% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 365427 (36.54%) aligned 0 times 217630 (21.76%) aligned exactly 1 time 416943 (41.69%) aligned >1 times 63.46% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 365267 (36.53%) aligned 0 times 218392 (21.84%) aligned exactly 1 time 416341 (41.63%) aligned >1 times 63.47% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 2_CGATGT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 2_CGATGT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 399343 Mapping efficiency: 39.9% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2256185 Total methylated C's in CpG context: 86136 Total methylated C's in CHG context: 9408 Total methylated C's in CHH context: 129242 Total methylated C's in Unknown context: 32 Total unmethylated C's in CpG context: 220939 Total unmethylated C's in CHG context: 405831 Total unmethylated C's in CHH context: 1404629 Total unmethylated C's in Unknown context: 408 C methylated in CpG context: 28.1% C methylated in CHG context: 2.3% C methylated in CHH context: 8.4% C methylated in Unknown context (CN or CHN): 7.3% Bismark completed in 0d 0h 44m 14s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/3_TTAGGC_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 3_TTAGGC_L001_R1_001_trimmed.fq.gz to 3_TTAGGC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 3_TTAGGC_L001_R1_001_trimmed.fq.gz to 3_TTAGGC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 3_TTAGGC_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 3_TTAGGC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 3_TTAGGC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 3_TTAGGC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1120:2166_1:N:0:TTAGGC 4 * 0 0 * * 0 0 TTTTGTTTTTTATATGTTAAATTTTTAAATG >> Writing bisulfite mapping results to 3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/3_TTAGGC_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5081:5741_1:N:0:TTAGGC Contig42137 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4111:8238_1:N:0:TTAGGC Contig402464 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17996:8041_1:N:0:TTAGGC Contig199452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13835:8556_1:N:0:TTAGGC Contig96488 1435 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8197:10152_1:N:0:TTAGGC Contig235100 511 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9314:10561_1:N:0:TTAGGC Contig456426 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21261:12190_1:N:0:TTAGGC Contig574936 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17053:15929_1:N:0:TTAGGC Contig132053 3541 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19618:16814_1:N:0:TTAGGC Contig290221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4146:20954_1:N:0:TTAGGC Contig97879 5453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4986:22540_1:N:0:TTAGGC Contig636094 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17441:24232_1:N:0:TTAGGC Contig443643 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3213:25142_1:N:0:TTAGGC Contig115521 2733 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4136:25527_1:N:0:TTAGGC Contig358786 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20772:30836_1:N:0:TTAGGC Contig598912 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18961:34608_1:N:0:TTAGGC Contig181492 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1537:35521_1:N:0:TTAGGC Contig649415 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8342:36155_1:N:0:TTAGGC Contig462266 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1243:41191_1:N:0:TTAGGC Contig421917 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7521:41207_1:N:0:TTAGGC Contig125524 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10695:43566_1:N:0:TTAGGC Contig254288 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4962:45227_1:N:0:TTAGGC Contig644370 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20300:45607_1:N:0:TTAGGC Contig194667 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17638:49552_1:N:0:TTAGGC Contig4083 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1744:50107_1:N:0:TTAGGC Contig3196 17803 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16252:50313_1:N:0:TTAGGC Contig66183 854 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16785:51537_1:N:0:TTAGGC Contig222718 630 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3570:52963_1:N:0:TTAGGC Contig347271 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8832:52894_1:N:0:TTAGGC Contig365299 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14830:54124_1:N:0:TTAGGC Contig26380 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6153:54331_1:N:0:TTAGGC Contig76256 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12627:55510_1:N:0:TTATGC Contig94293 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15085:56355_1:N:0:TTAGGC Contig514909 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5917:57122_1:N:0:TTAGGC Contig397146 363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10288:58030_1:N:0:TTAGGC Contig117977 180 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20315:59168_1:N:0:TTAGGC Contig300694 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15555:59368_1:N:0:TTAGGC Contig44673 12648 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8009:60048_1:N:0:TTAGGC Contig641383 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14259:70473_1:N:0:TTAGGC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14730:70357_1:N:0:TTAGGC Contig290221 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9563:70552_1:N:0:TTAGGC Contig79305 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9843:71111_1:N:0:TTAGGC Contig468652 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14067:71580_1:N:0:TTAGGC Contig596016 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5744:75297_1:N:0:TTAGGC Contig13974 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8262:75494_1:N:0:TTAGGC Contig695575 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16485:75383_1:N:0:TTAGGC Contig438635 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15415:76678_1:N:0:TTAGGC Contig443404 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14404:77547_1:N:0:TTAGGC Contig74607 3434 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19937:79777_1:N:0:TTAGGC Contig57928 21869 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2924:81225_1:N:0:TTAGGC Contig117 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2487:81994_1:N:0:TTAGGC Contig246517 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2955:83812_1:N:0:TTAGGC Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2249:86665_1:N:0:TTAGGC Contig652532 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14440:86832_1:N:0:TTAGGC Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15883:86839_1:N:0:TTAGGC Contig31794 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6977:87284_1:N:0:TTAGGC Contig178270 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11595:87450_1:N:0:TTAGGC Contig449110 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11314:89185_1:N:0:TTAGGC Contig330951 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7697:89833_1:N:0:TTAGGC Contig197804 447 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3591:92075_1:N:0:TTAGGC Contig113133 1414 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19627:92462_1:N:0:TTAGGC Contig13945 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10125:93167_1:N:0:TTAGGC Contig207546 808 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16411:93166_1:N:0:TTAGGC Contig52933 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13728:95368_1:N:0:TTAGGC Contig367397 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5297:97537_1:N:0:TTAGGC Contig160526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2057:97896_1:N:0:TTAGGC Contig36127 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20078:100336_1:N:0:TTAGGC Contig506165 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5614:4526_1:N:0:TTAGGC Contig540388 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18198:6026_1:N:0:TTAGGC Contig281184 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14839:7492_1:N:0:TTAGGC Contig452211 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3716:8902_1:N:0:TTAGGC Contig582711 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10444:8839_1:N:0:TTAGGC Contig94524 8135 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2073:11160_1:N:0:TTAGGC Contig507662 117 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4777:12696_1:N:0:TTAGGC Contig536181 115 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7473:13166_1:N:0:TTAGGC Contig52820 12647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21241:13385_1:N:0:TTAGGC Contig141320 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18857:14154_1:N:0:TTAGGC Contig506591 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17460:16689_1:N:0:TTAGGC Contig638766 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17011:16895_1:N:0:TTAGGC Contig67821 3136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13854:17062_1:N:0:TTAGGC Contig137598 1841 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13796:17070_1:N:0:TTAGGC Contig653221 320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20842:19136_1:N:0:TTAGGC Contig36851 1099 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5757:19626_1:N:0:TTAGGC Contig509274 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15014:20254_1:N:0:TTAGGC Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21259:21296_1:N:0:TTAGGC Contig624250 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16865:23851_1:N:0:TTAGGC Contig623140 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14527:25831_1:N:0:TTAGGC Contig570472 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7663:26447_1:N:0:TTAGGC Contig528791 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8876:26265_1:N:0:TTAGGC Contig406952 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9093:27142_1:N:0:TTAGGC Contig12930 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16842:28320_1:N:0:TTAGGC Contig12338 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18971:29460_1:N:0:TTAGGC Contig60519 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14590:30297_1:N:0:TTAGGC Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14762:30912_1:N:0:TTAGGC Contig393691 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11236:32756_1:N:0:TTAGGC Contig258679 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1722:33694_1:N:0:TTAGGC Contig378594 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6382:33526_1:N:0:TTAGGC Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13706:33805_1:N:0:TTAGGC Contig125724 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1916:34010_1:N:0:TTAGGC Contig175238 982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15002:35446_1:N:0:TTAGGC Contig334562 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12519:35968_1:N:0:TTAGGC Contig112922 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3157:36936_1:N:0:TTAGGC Contig397195 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5314:38664_1:N:0:TTAGGC Contig94064 954 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16873:39795_1:N:0:TTAGGC Contig50844 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1508:41561_1:N:0:TTAGGC Contig637690 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1937:42625_1:N:0:TTAGGC Contig420490 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15263:43108_1:N:0:TTAGGC Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15913:43877_1:N:0:TTAGGC Contig508137 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1172:51506_1:N:0:TTAGGC Contig686969 1578 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15884:51837_1:N:0:TTAGGC Contig53023 9203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8447:52162_1:N:0:TTAGGC Contig504077 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2663:52468_1:N:0:TTAGGC Contig178534 1616 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11386:52512_1:N:0:TTAGGC Contig248206 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6469:52984_1:N:0:TTAGGC Contig67849 9410 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11310:53150_1:N:0:TTAGGC Contig232924 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8728:54060_1:N:0:TTAGGC Contig194927 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18093:56033_1:N:0:TTAGGC Contig1284 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4702:57556_1:N:0:TTAGGC Contig696381 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15230:57538_1:N:0:TTAGGC Contig125459 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2129:57808_1:N:0:TTAGGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16497:59102_1:N:0:TTAGGC Contig256892 390 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19407:59118_1:N:0:TTAGGC Contig48449 5296 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15793:63310_1:N:0:TTAGGC Contig343041 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14491:63605_1:N:0:TTAGGC Contig542664 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18313:64469_1:N:0:TTAGGC Contig310480 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18513:65345_1:N:0:TTAGGC Contig76080 2248 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13426:66247_1:N:0:TTAGGC Contig645560 111 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8887:66408_1:N:0:TTAGGC Contig396095 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19678:67047_1:N:0:TTAGGC Contig609328 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13220:68723_1:N:0:TTAGGC Contig301723 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19058:69864_1:N:0:TTAGGC Contig439697 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12296:70061_1:N:0:TTAGGC Contig102480 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17741:70189_1:N:0:TTAGGC Contig187556 736 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1484:73012_1:N:0:TTAGGC Contig533378 215 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9994:73097_1:N:0:TTAGGC Contig24100 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10296:73317_1:N:0:TTAGGC Contig143855 2495 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2699:74349_1:N:0:TTAGGC Contig140547 3880 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7784:75097_1:N:0:TTAGGC Contig4813 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2134:75280_1:N:0:TTAGGC Contig671779 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20642:75679_1:N:0:TTAGGC Contig123279 704 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1211:76462_1:N:0:TTAGGC Contig15307 2314 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3263:78202_1:N:0:TTAGGC Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2558:78556_1:N:0:TTAGGC Contig405449 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1235:80407_1:N:0:TTAGGC Contig137493 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15845:81805_1:N:0:TTAGGC Contig527515 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7485:82764_1:N:0:TTAGGC Contig191294 706 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10743:88301_1:N:0:TTAGGC Contig113856 1122 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8409:91131_1:N:0:TTAGGC Contig202387 464 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15267:93284_1:N:0:TTAGGC Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12456:97303_1:N:0:TTAGGC Contig576534 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20441:98788_1:N:0:TTAGGC Contig215795 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15385:99610_1:N:0:TTAGGC Contig248441 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1565:99873_1:N:0:TTAGGC Contig535967 266 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12149:100203_1:N:0:TTAGGC Contig502728 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10572:4994_1:N:0:TTAGGC Contig685384 110 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12787:5542_1:N:0:TTAGGC Contig362824 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3017:6549_1:N:0:TTAGGC Contig134939 3112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4308:8028_1:N:0:TTAGGC Contig12009 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12745:8826_1:N:0:TTAGGC Contig657013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20620:9405_1:N:0:TTAGGC Contig452682 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8878:12290_1:N:0:TTAGGC Contig253003 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19921:12942_1:N:0:TTAGGC Contig219580 567 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16956:13975_1:N:0:TTAGGC Contig402077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10937:14777_1:N:0:TTAGGC Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17748:15556_1:N:0:TTAGGC Contig52742 9895 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11485:18247_1:N:0:TTAGGC Contig504043 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18715:19173_1:N:0:TTAGGC Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19638:19207_1:N:0:TTAGGC Contig86218 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19428:22286_1:N:0:TTAGGC Contig181365 922 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12886:23288_1:N:0:TTAGGC Contig304761 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15410:23893_1:N:0:TTAGGC Contig30756 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12946:25274_1:N:0:TTAGGC Contig12865 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6626:26048_1:N:0:TTAGGC Contig440625 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17838:26922_1:N:0:TTAGGC Contig395361 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16152:27652_1:N:0:TTAGGC Contig32779 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18078:29596_1:N:0:TTAGGC Contig432804 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6172:29833_1:N:0:TTAGGC Contig88172 2575 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1428:30756_1:N:0:TTAGGC Contig544373 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16044:31738_1:N:0:TTAGGC Contig492823 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8056:34494_1:N:0:TTAGGC Contig206213 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18605:34473_1:N:0:TTAGGC Contig18356 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4324:34717_1:N:0:TTAGGC Contig234615 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16667:34566_1:N:0:TTAGGC Contig348950 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2700:35595_1:N:0:TTAGGC Contig627364 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2693:35613_1:N:0:TTAGGC Contig627364 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8360:36796_1:N:0:TTAGGC Contig55673 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6897:41690_1:N:0:TTAGGC Contig234905 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16788:41969_1:N:0:TTAGGC Contig466298 234 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5958:42643_1:N:0:TTAGGC Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7696:45350_1:N:0:TTAGGC Contig583785 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12386:45379_1:N:0:TTAGGC Contig62938 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8437:46054_1:N:0:TTAGGC Contig639777 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16611:47466_1:N:0:TTAGGC Contig40273 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6439:48063_1:N:0:TTAGGC Contig526039 129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21156:49783_1:N:0:TTAGGC Contig635923 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8304:51064_1:N:0:TTAGGC Contig360581 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18841:52172_1:N:0:TTAGGC Contig104841 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7696:54111_1:N:0:TTAGGC Contig139593 1691 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19969:54068_1:N:0:TTAGGC Contig157520 590 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14355:55339_1:N:0:TTAGGC Contig631106 326 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3052:56336_1:N:0:TTAGGC Contig30760 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8293:57157_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2190:58427_1:N:0:TTAGGC Contig41108 1372 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8533:59997_1:N:0:TTAGGC Contig181140 1031 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17257:60235_1:N:0:TTAGGC Contig309032 1104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1773:62621_1:N:0:TTAGGC Contig126510 1451 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17560:62890_1:N:0:TTAGGC Contig299698 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4438:66080_1:N:0:TTAGGC Contig98491 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5296:66178_1:N:0:TTAGGC Contig315 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10546:67867_1:N:0:TTAGGC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1880:68826_1:N:0:TTAGGC Contig8057 8186 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18258:69416_1:N:0:TTAGGC Contig438716 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6115:70177_1:N:0:TTAGGC Contig52112 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19713:70189_1:N:0:TTAGGC Contig424848 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20690:70489_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14337:71707_1:N:0:TTAGGC Contig681062 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7457:73389_1:N:0:TTAGGC Contig635923 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1274:74503_1:N:0:TTAGGC Contig593612 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14257:75764_1:N:0:TTAGGC Contig274870 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3112:78042_1:N:0:TTAGGC Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2109:78699_1:N:0:TTAGGC Contig119084 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18054:78627_1:N:0:TTAGGC Contig13493 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15480:80806_1:N:0:TTAGGC Contig60846 5639 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4246:81427_1:N:0:TTAGGC Contig509199 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16079:81267_1:N:0:TTAGGC Contig334342 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21145:82379_1:N:0:TTAGGC Contig692813 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5849:83240_1:N:0:TTAGGC Contig582114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3451:84068_1:N:0:TTAGGC Contig320955 144 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11609:86142_1:N:0:TTAGGC Contig288959 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3691:89953_1:N:0:TTAGGC Contig349733 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18694:93075_1:N:0:TTAGGC Contig255068 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2826:96051_1:N:0:TTAGGC Contig129530 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12334:96647_1:N:0:TTAGGC Contig395140 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6997:97272_1:N:0:TTAGGC Contig424115 199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2668:97789_1:N:0:TTAGGC Contig63431 18762 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19506:99186_1:N:0:TTAGGC Contig149883 4021 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12970:100534_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5296:3476_1:N:0:TTAGGC Contig427146 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2224:3534_1:N:0:TTAGGC Contig5974 8404 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19871:6357_1:N:0:TTAGGC Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14286:6693_1:N:0:TTAGGC Contig73546 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9746:7253_1:N:0:TTAGGC Contig438716 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19724:9532_1:N:0:TTAGGC Contig374237 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10641:10386_1:N:0:TTAGGC Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17040:10462_1:N:0:TTAGGC Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17603:10547_1:N:0:TTAGGC Contig79341 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11864:12669_1:N:0:TTAGGC Contig560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19970:17120_1:N:0:TTAGGC Contig171330 809 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16405:17417_1:N:0:TTAGGC Contig491795 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2260:18521_1:N:0:TTAGGC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12256:20315_1:N:0:TTAGGC Contig85944 7534 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8637:21449_1:N:0:TTAGGC Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13812:23488_1:N:0:TTAGGC Contig115245 2017 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3344:27093_1:N:0:TTAGGC Contig584021 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6457:29428_1:N:0:TTAGGC Contig18716 78249 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20779:29326_1:N:0:TTAGGC Contig302895 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13456:29528_1:N:0:TTAGGC Contig604950 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21063:29855_1:N:0:TTAGGC Contig337113 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20992:30965_1:N:0:TTAGGC Contig422215 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14683:31947_1:N:0:TTAGGC Contig356621 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4082:34557_1:N:0:TTAGGC Contig459495 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16864:35603_1:N:0:TTAGGC Contig481862 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3593:37530_1:N:0:TTAGGC Contig162809 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18701:38899_1:N:0:TTAGGC Contig481475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6451:41243_1:N:0:TTAGGC Contig436741 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9826:42861_1:N:0:TTAGGC Contig13974 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13888:42965_1:N:0:TTAGGC Contig54137 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10955:44028_1:N:0:TTAGGC Contig550634 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17712:46708_1:N:0:TTAGGC Contig601866 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18494:49621_1:N:0:TTAGGC Contig481475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16461:50566_1:N:0:TTAGGC Contig518022 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3102:51351_1:N:0:TTAGGC Contig299709 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19231:51695_1:N:0:TTAGGC Contig38356 140 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13863:52595_1:N:0:TTAGGC Contig616588 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17663:53503_1:N:0:TTAGGC Contig4012 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20027:55551_1:N:0:TTAGGC Contig467150 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13204:57003_1:N:0:TTAGGC Contig461438 143 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3845:58293_1:N:0:TTAGGC Contig421939 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13761:58722_1:N:0:TTAGGC Contig240617 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12262:59557_1:N:0:TTAGGC Contig498219 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16044:59649_1:N:0:TTAGGC Contig265638 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17796:59799_1:N:0:TTAGGC Contig48205 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2325:62164_1:N:0:TTAGGC Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20553:63953_1:N:0:TTAGGC Contig71779 14343 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4561:65489_1:N:0:TTAGGC Contig582114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15352:66706_1:N:0:TTAGGC Contig41565 1934 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2110:67209_1:N:0:TTAGGC Contig81899 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4021:67062_1:N:0:TTAGGC Contig631140 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4836:68689_1:N:0:TTAGGC Contig55038 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15543:69285_1:N:0:TTAGGC Contig81093 1327 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19397:70279_1:N:0:TTAGGC Contig642394 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5207:72845_1:N:0:TTAGGC Contig84290 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19353:73527_1:N:0:TTAGGC Contig61967 1879 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1731:74355_1:N:0:TTAGGC Contig553515 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12499:75118_1:N:0:TTAGGC Contig679613 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12760:76002_1:N:0:TTAGGC Contig414877 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16919:78226_1:N:0:TTAGGC Contig37976 3601 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3443:79255_1:N:0:TTAGGC Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7984:79652_1:N:0:TTAGGC Contig385088 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8004:79670_1:N:0:TTAGGC Contig385088 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10152:79609_1:N:0:TTAGGC Contig181713 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21194:79601_1:N:0:TTAGGC Contig19038 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15766:79959_1:N:0:TTAGGC Contig551859 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18374:80971_1:N:0:TTAGGC Contig86128 6054 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18591:81210_1:N:0:TTAGGC Contig313509 169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1906:82240_1:N:0:TTAGGC Contig3115 10399 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15222:83394_1:N:0:TTAGGC Contig344292 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10459:84683_1:N:0:TTAGGC Contig201881 2228 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18166:84629_1:N:0:TTAGGC Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13829:84861_1:N:0:TTAGGC Contig481847 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17142:85098_1:N:0:TTAGGC Contig287632 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3599:85522_1:N:0:TTAGGC Contig77627 3459 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6592:86966_1:N:0:TTAGGC Contig601288 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9915:86924_1:N:0:TTAGGC Contig209389 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2116:88465_1:N:0:TTAGGC Contig159793 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12104:88658_1:N:0:TTAGGC Contig120444 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15195:89122_1:N:0:TTAGGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4931:89283_1:N:0:TTAGGC Contig164550 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19808:89298_1:N:0:TTAGGC Contig602712 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13603:90130_1:N:0:TTAGGC Contig558405 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9085:91379_1:N:0:TTAGGC Contig173269 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16350:91913_1:N:0:TTAGGC Contig40436 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1345:92844_1:N:0:TTAGGC Contig463946 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18962:94405_1:N:0:TTAGGC Contig282460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3239:98039_1:N:0:TTAGGC Contig425455 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8732:98016_1:N:0:TTAGGC Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19698:3118_1:N:0:TTAGGC Contig576478 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19698:5884_1:N:0:TTAGGC Contig604213 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4919:7622_1:N:0:TTAGGC Contig506473 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10260:8283_1:N:0:TTAGGC Contig287273 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19656:8418_1:N:0:TTAGGC Contig36605 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19353:8777_1:N:0:TTAGGC Contig494493 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2777:10526_1:N:0:TTAGGC Contig159515 959 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17387:12506_1:N:0:TTAGGC Contig627288 239 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17632:14284_1:N:0:TTAGGC Contig200043 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3658:14709_1:N:0:TTAGGC Contig71779 14343 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9257:14562_1:N:0:TTAGGC Contig400035 4363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14382:17175_1:N:0:TTAGGC Contig21483 8466 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11289:17691_1:N:0:TTAGGC Contig110856 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13222:17569_1:N:0:TTAGGC Contig418362 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13116:17830_1:N:0:TTAGGC Contig657301 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3330:18668_1:N:0:TTAGGC Contig364634 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6338:18803_1:N:0:TTAGGC Contig561725 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15956:19284_1:N:0:TTAGGC Contig617279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3106:19924_1:N:0:TTAGGC Contig46276 5981 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5519:21377_1:N:0:TTAGGC Contig98714 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9857:21862_1:N:0:TTAGGC Contig414822 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2251:23240_1:N:0:TTAGGC Contig663506 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11708:23486_1:N:0:TTAGGC Contig434043 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10980:25430_1:N:0:TTAGGC Contig176386 464 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8086:27598_1:N:0:TTAGGC Contig11695 296 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15430:28905_1:N:0:TTAGGC Contig86131 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2441:31924_1:N:0:TTAGGC Contig312846 186 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10510:33527_1:N:0:TTAGGC Contig124718 1521 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14458:33983_1:N:0:TTAGGC Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13132:34341_1:N:0:TTAGGC Contig493970 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1366:35421_1:N:0:TTAGGC Contig536074 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2003:35447_1:N:0:TTAGGC Contig502478 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20388:35375_1:N:0:TTAGGC Contig689225 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7912:36606_1:N:0:TTAGGC Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15065:37793_1:N:0:TTAGGC Contig471809 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16464:38269_1:N:0:TTAGGC Contig140622 827 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6457:41319_1:N:0:TTAGGC Contig476339 501 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11913:41489_1:N:0:TTAGGC Contig406834 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17334:41938_1:N:0:TTAGGC Contig472559 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16947:42039_1:N:0:TTAGGC Contig448454 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10173:42563_1:N:0:TTAGGC Contig265958 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11890:42617_1:N:0:TTAGGC Contig83500 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5554:46939_1:N:0:TTAGGC Contig602526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12303:46925_1:N:0:TTAGGC Contig29630 3993 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2352:47906_1:N:0:TTAGGC Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16898:49767_1:N:0:TTAGGC Contig224877 121 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4444:51275_1:N:0:TTAGGC Contig645616 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6599:52401_1:N:0:TTAGGC Contig132467 794 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15226:52631_1:N:0:TTAGGC Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8436:56520_1:N:0:TTAGGC Contig454724 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18689:58302_1:N:0:TTAGGC Contig81716 5541 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12576:58684_1:N:0:TTAGGC Contig427991 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15631:58912_1:N:0:TTAGGC Contig222427 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14133:59275_1:N:0:TTAGGC Contig661481 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13961:60255_1:N:0:TTAGGC Contig490162 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8248:61421_1:N:0:TTAGGC Contig57824 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20296:61257_1:N:0:TTAGGC Contig513923 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19536:62171_1:N:0:TTAGGC Contig116644 8056 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1773:63795_1:N:0:TTAGGC Contig14063 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7106:64561_1:N:0:TTAGGC Contig607903 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16998:64800_1:N:0:TTAGGC Contig209986 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2781:65433_1:N:0:TTAGGC Contig676666 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12236:65720_1:N:0:TTAGGC Contig669075 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17209:65560_1:N:0:TTAGGC Contig16579 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7108:66174_1:N:0:TTAGGC Contig303561 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12277:67897_1:N:0:TTAGGC Contig612339 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9950:70555_1:N:0:TTAGGC Contig113399 883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3492:73663_1:N:0:TTAGGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12117:73724_1:N:0:TTAGGC Contig300726 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12534:76018_1:N:0:TTAGGC Contig676959 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4279:77023_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7139:78354_1:N:0:TTAGGC Contig232351 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12975:78667_1:N:0:TTAGGC Contig196177 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20407:78604_1:N:0:TTAGGC Contig597406 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2590:79398_1:N:0:TTAGGC Contig186329 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16934:79686_1:N:0:TTAGGC Contig132467 794 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12571:79948_1:N:0:TTAGGC Contig482273 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15077:80259_1:N:0:TTAGGC Contig215132 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16027:80267_1:N:0:TTAGGC Contig62730 10859 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8735:82764_1:N:0:TTAGGC Contig53573 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15604:83912_1:N:0:TTAGGC Contig525565 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18356:85129_1:N:0:TTAGGC Contig482295 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18087:86019_1:N:0:TTAGGC Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2329:87598_1:N:0:TTAGGC Contig399609 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2693:92859_1:N:0:TTAGGC Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4092:92817_1:N:0:TTAGGC Contig347934 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3111:93485_1:N:0:TTAGGC Contig505475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17132:93705_1:N:0:TTAGGC Contig46442 4147 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16117:93928_1:N:0:TTAGGC Contig278847 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1848:94401_1:N:0:TTAGGC Contig29266 8007 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8825:96571_1:N:0:TTAGGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6690:96802_1:N:0:TTAGGC Contig338229 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12315:2181_1:N:0:TTAGGC Contig510483 172 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4023:3403_1:N:0:TTAGGC Contig180914 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20746:3353_1:N:0:TTAGGC Contig298872 244 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4673:5054_1:N:0:TTAGGC Contig190851 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15845:6444_1:N:0:TTAGGC Contig267114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17056:6778_1:N:0:TTAGGC Contig414121 137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4612:7893_1:N:0:TTAGGC Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9856:9131_1:N:0:TTAGGC Contig421797 209 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10814:10684_1:N:0:TTAGGC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8735:11261_1:N:0:TTAGGC Contig628196 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14020:13086_1:N:0:TTAGGC Contig51364 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9644:13555_1:N:0:TTAGGC Contig387236 475 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9382:13947_1:N:0:TTAGGC Contig108449 1169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12254:15299_1:N:0:TTAGGC Contig565143 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15532:15737_1:N:0:TTAGGC Contig114702 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19389:15530_1:N:0:TTAGGC Contig74124 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10935:16594_1:N:0:TTAGGC Contig270296 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5630:17039_1:N:0:TTAGGC Contig439473 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18610:17629_1:N:0:TTAGGC Contig613521 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13100:19021_1:N:0:TTAGGC Contig201881 2228 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4816:19982_1:N:0:TTAGGC Contig291855 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11397:19838_1:N:0:TTAGGC Contig69704 8771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16733:21630_1:N:0:TTAGGC Contig142950 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11277:22472_1:N:0:TTAGGC Contig2853 8527 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5996:23559_1:N:0:TTAGGC Contig129430 4992 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21120:25258_1:N:0:TTAGGC Contig111553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17885:26935_1:N:0:TTAGGC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18082:29069_1:N:0:TTAGGC Contig233413 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15851:29393_1:N:0:TTAGGC Contig179374 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18236:31137_1:N:0:TTAGGC Contig38775 1897 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18678:31229_1:N:0:TTAGGC Contig22143 11814 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5149:31697_1:N:0:TTAGGC Contig419606 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1964:32816_1:N:0:TTAGGC Contig355919 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11960:33156_1:N:0:TTAGGC Contig129402 1531 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18844:33150_1:N:0:TTAGGC Contig135488 2214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18479:34421_1:N:0:TTAGGC Contig683417 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9982:36324_1:N:0:TTAGGC Contig140879 639 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18194:38106_1:N:0:TTAGGC Contig531515 203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4890:39484_1:N:0:TTAGGC Contig338686 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9001:40479_1:N:0:TTAGGC Contig135527 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12293:40330_1:N:0:TTAGGC Contig678349 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4996:41621_1:N:0:TTAGGC Contig452877 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4649:41770_1:N:0:TTAGGC Contig393866 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15760:41888_1:N:0:TTAGGC Contig477449 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11265:42736_1:N:0:TTAGGC Contig518500 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18137:43278_1:N:0:TTAGGC Contig333158 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2954:43662_1:N:0:TTAGGC Contig362985 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20886:44074_1:N:0:TTAGGC Contig613594 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2772:44488_1:N:0:TTAGGC Contig135488 2215 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17665:44492_1:N:0:TTAGGC Contig648802 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2345:45854_1:N:0:TTAGGC Contig1548 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9584:46292_1:N:0:TTAGGC Contig402077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9908:47334_1:N:0:TTAGGC Contig151200 1210 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14691:47274_1:N:0:TTAGGC Contig85159 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1627:47523_1:N:0:TTAGGC Contig116639 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3964:48140_1:N:0:TTAGGC Contig15160 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18047:50460_1:N:0:TTAGGC Contig396992 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19412:52640_1:N:0:TTAGGC Contig14864 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16544:52846_1:N:0:TTAGGC Contig113467 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6134:53902_1:N:0:TTAGGC Contig9424 2288 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10673:53827_1:N:0:TTAGGC Contig506303 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18913:54737_1:N:0:TTAGGC Contig118590 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12768:56161_1:N:0:TTAGGC Contig231625 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18674:56979_1:N:0:TTAGGC Contig147146 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15051:57391_1:N:0:TTAGGC Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2359:57680_1:N:0:TTAGGC Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13209:58465_1:N:0:TTAGGC Contig247044 119 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8160:58945_1:N:0:TTAGGC Contig521557 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16639:59903_1:N:0:TTAGGC Contig9323 1624 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1659:61381_1:N:0:TTAGGC Contig161423 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6374:63047_1:N:0:TTAGGC Contig642394 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17949:63662_1:N:0:TTAGGC Contig650344 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18044:64622_1:N:0:TTAGGC Contig86197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6401:66087_1:N:0:TTAGGC Contig128061 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9679:66269_1:N:0:TTAGGC Contig445714 708 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12645:66920_1:N:0:TTAGGC Contig58675 4540 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15337:66977_1:N:0:TTAGGC Contig121994 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12878:67219_1:N:0:TTAGGC Contig257227 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3581:68275_1:N:0:TTAGGC Contig254888 107 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3436:69519_1:N:0:TTAGGC Contig290044 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8305:70332_1:N:0:TTAGGC Contig9112 2445 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4188:72038_1:N:0:TAAGGC Contig194977 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13199:72397_1:N:0:TTAGGC Contig273362 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8194:75270_1:N:0:TTAGGC Contig442470 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10726:76480_1:N:0:TTAGGC Contig448533 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12671:78124_1:N:0:TTAGGC Contig594266 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7062:78413_1:N:0:TTAGGC Contig562505 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8947:78973_1:N:0:TTAGGC Contig470205 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12210:80094_1:N:0:TTAGGC Contig540798 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10910:80798_1:N:0:TTAGGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12504:81411_1:N:0:TTAGGC Contig122733 778 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3649:81517_1:N:0:TTAGGC Contig139473 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7910:81760_1:N:0:TTAGGC Contig101747 3795 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9871:84747_1:N:0:TTAGGC Contig289013 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10336:85798_1:N:0:TTAGGC Contig181632 1458 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19494:86609_1:N:0:TTAGGC Contig651224 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16336:87575_1:N:0:TTAGGC Contig402077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10177:90540_1:N:0:TTAGGC Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16530:90946_1:N:0:TTAGGC Contig102838 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6968:91377_1:N:0:TTAGGC Contig389772 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18765:91573_1:N:0:TTAGGC Contig138977 783 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4295:92748_1:N:0:TTAGGC Contig200043 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21091:93184_1:N:0:TTAGGC Contig296591 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13090:93369_1:N:0:TTAGGC Contig44950 1346 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18403:95396_1:N:0:TTAGGC Contig206320 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17481:95685_1:N:0:TTAGGC Contig1113 17491 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14494:96170_1:N:0:TTAGGC Contig618344 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20170:96430_1:N:0:TTAGGC Contig139048 1034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2497:98447_1:N:0:TTAGGC Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1124:98824_1:N:0:TTAGGC Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16737:99421_1:N:0:TTAGGC Contig613809 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13795:100511_1:N:0:TTAGGC Contig201196 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10178:2834_1:N:0:TTAGGC Contig85959 1695 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8006:4352_1:N:0:TTAGGC Contig570507 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9106:4328_1:N:0:TTAGGC Contig686371 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11119:4511_1:N:0:TTAGGC Contig414737 307 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8240:4775_1:N:0:TTAGGC Contig325954 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17881:5573_1:N:0:TTAGGC Contig365437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15462:7993_1:N:0:TTAGGC Contig282460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5124:10422_1:N:0:TTAGGC Contig688103 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15951:10918_1:N:0:TTAGGC Contig175238 982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7993:11985_1:N:0:TTAGGC Contig386999 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18805:13556_1:N:0:TTAGGC Contig87970 8051 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1653:13878_1:N:0:TTAGGC Contig182266 2784 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11269:14656_1:N:0:TTAGGC Contig468427 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2603:16782_1:N:0:TTAGGC Contig206561 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9698:17191_1:N:0:TTAGGA Contig126029 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17065:19726_1:N:0:TTAGGC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15185:20728_1:N:0:TTAGGC Contig8057 8186 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1185:21614_1:N:0:TTAGGC Contig306152 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11181:22158_1:N:0:TTAGGC Contig627812 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8603:22650_1:N:0:TTAGGC Contig37817 19532 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17149:22581_1:N:0:TTAGGC Contig60519 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15829:25863_1:N:0:TTAGGC Contig454609 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2694:26629_1:N:0:TTAGGC Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12188:26619_1:N:0:TTAGGA Contig432604 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6534:27355_1:N:0:TTAGGC Contig695781 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18203:27538_1:N:0:TTAGGC Contig649689 13132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2440:27831_1:N:0:TTAGGC Contig642394 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20755:28816_1:N:0:TTAGGC Contig604173 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8717:29203_1:N:0:TTAGGC Contig10332 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4299:29366_1:N:0:TTAGGC Contig123716 1094 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14049:29348_1:N:0:TTAGGC Contig75027 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19865:31550_1:N:0:TTAGGC Contig209925 805 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4968:32206_1:N:0:TTAGGC Contig10709 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5458:33321_1:N:0:TTAGGC Contig272720 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4161:34624_1:N:0:TTAGGC Contig139473 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14571:39458_1:N:0:TTAGGC Contig77973 3053 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7579:39952_1:N:0:TTAGGC Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21056:40752_1:N:0:TTAGGC Contig559683 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10138:42423_1:N:0:TTAGGC Contig426912 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10991:45631_1:N:0:TTAGGC Contig341961 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11335:45719_1:N:0:TTAGGC Contig186561 658 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15212:46180_1:N:0:TTAGGC Contig175238 983 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21080:47145_1:N:0:TTAGGC Contig454319 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3417:47297_1:N:0:TTAGGC Contig587279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10679:48150_1:N:0:TTAGGC Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19853:49948_1:N:0:TTAGGC Contig10327 751 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1114:50213_1:N:0:TTAGGC Contig616452 145 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6216:50867_1:N:0:TTAGGC Contig109672 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13801:50830_1:N:0:TTAGGC Contig116644 8055 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14738:51095_1:N:0:TTAGGC Contig265370 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4960:51419_1:N:0:TTAGGC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15016:53504_1:N:0:TTAGGC Contig129663 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20153:54056_1:N:0:TTAGGC Contig179377 405 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6451:54836_1:N:0:TTAGGC Contig270163 172 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6584:56667_1:N:0:TTAGGC Contig260676 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9285:58799_1:N:0:TTAGGC Contig40935 10344 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2356:60453_1:N:0:TTAGGC Contig637676 525 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6610:60311_1:N:0:TTAGGC Contig666417 123 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15482:60430_1:N:0:TTAGGC Contig582114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4082:60761_1:N:0:TTAGGC Contig25926 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4201:61125_1:N:0:TTAGGC Contig160055 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10293:61593_1:N:0:TTAGGC Contig135912 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19978:61748_1:N:0:TTAGGC Contig13633 467 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12047:63002_1:N:0:TTAGGC Contig252221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7954:63988_1:N:0:TTAGGC Contig131142 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1837:66043_1:N:0:TTAGGC Contig493352 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9509:66685_1:N:0:TTAGGC Contig496149 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16574:68156_1:N:0:TTAGGC Contig582114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4764:70177_1:N:0:TTAGGC Contig85039 17760 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13199:76705_1:N:0:TTAGGC Contig65497 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5764:77679_1:N:0:TTAGGC Contig554573 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18271:77698_1:N:0:TTAGGC Contig170937 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13111:79221_1:N:0:TTAGGC Contig403649 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19730:79394_1:N:0:TTAGGC Contig100773 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19327:80965_1:N:0:TTAGGC Contig4832 2990 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2939:82865_1:N:0:TTAGGC Contig456250 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6228:83126_1:N:0:TTAGGC Contig188849 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14730:83128_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7180:86662_1:N:0:TTAGGC Contig610701 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7049:87670_1:N:0:TTAGGC Contig519624 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20703:87677_1:N:0:TTAGGC Contig372463 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15372:88776_1:N:0:TTAGGC Contig277106 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21062:88966_1:N:0:TTAGGC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1341:89787_1:N:0:TTAGGC Contig649058 307 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7519:89950_1:N:0:TTAGGC Contig360400 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5607:90964_1:N:0:TTAGGC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5403:92583_1:N:0:TTAGGC Contig226900 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18256:93376_1:N:0:TTAGGC Contig226569 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15168:93722_1:N:0:TTAGGC Contig305045 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7322:94668_1:N:0:TTAGGC Contig114613 1983 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4590:94846_1:N:0:TTAGGC Contig69704 8771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14996:96867_1:N:0:TTAGGC Contig598509 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16110:98228_1:N:0:TTAGGC Contig462768 140 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16259:98770_1:N:0:TTAGGC Contig315612 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4146:2883_1:N:0:TTAGGC Contig4980 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9439:3342_1:N:0:TTAGGC Contig222677 200 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16384:3982_1:N:0:TTAGGC Contig461296 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6907:4366_1:N:0:TTAGGC Contig369327 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18793:5022_1:N:0:TTAGGC Contig635923 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11635:6582_1:N:0:TTAGGC Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11668:6659_1:N:0:TTAGGC Contig437100 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2327:7065_1:N:0:TTAGGC Contig466873 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16369:7419_1:N:0:TTAGGC Contig64508 473 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20426:7558_1:N:0:TTAGGC Contig498442 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18215:8810_1:N:0:TTAGGC Contig66580 9034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16617:9039_1:N:0:TTAGGC Contig30334 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10577:10590_1:N:0:TTAGGC Contig115560 827 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18397:10888_1:N:0:TTAGGC Contig202057 1035 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13457:11147_1:N:0:TTAGGC Contig383547 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14791:11447_1:N:0:TTAGGC Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3088:12685_1:N:0:TTAGGC Contig242482 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6837:12894_1:N:0:TTAGGC Contig346842 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14425:15162_1:N:0:TTAGGC Contig479819 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20847:15507_1:N:0:TTAGGC Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15078:15892_1:N:0:TTAGGC Contig573103 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9095:16021_1:N:0:TTAGGC Contig329152 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20946:16559_1:N:0:TTAGGC Contig682898 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8488:17011_1:N:0:TTAGGC Contig415296 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8087:18160_1:N:0:TTAGGC Contig653957 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20589:19220_1:N:0:TTAGGC Contig507864 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12404:19543_1:N:0:TTAGGC Contig169861 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13348:19997_1:N:0:TTAGGC Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3194:20425_1:N:0:TTAGGC Contig670368 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13155:21618_1:N:0:TTAGGC Contig589573 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16860:22291_1:N:0:TTAGGC Contig399823 125 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10030:22816_1:N:0:TTAGGC Contig595629 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19828:23540_1:N:0:TTAGGC Contig352517 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19856:23583_1:N:0:TTAGGC Contig352517 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4196:24431_1:N:0:TTAGGC Contig679613 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10446:27329_1:N:0:TTAGGC Contig355406 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3856:28133_1:N:0:TTAGGC Contig567701 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8237:29453_1:N:0:TTAGGC Contig50279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16788:30067_1:N:0:TTAGGC Contig620400 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20217:31690_1:N:0:TTAGGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10180:31907_1:N:0:TTAGGC Contig254790 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8062:32932_1:N:0:TTAGGC Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2049:36157_1:N:0:TTAGGC Contig37581 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9642:36134_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5884:36251_1:N:0:TTAGGC Contig458007 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4219:38043_1:N:0:TTAGGC Contig272435 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7369:39166_1:N:0:TTAGGC Contig414714 382 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6062:39405_1:N:0:TTAGGC Contig435226 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7786:40241_1:N:0:TTAGGC Contig436133 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12540:40335_1:N:0:TTAGGC Contig152297 808 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3985:42992_1:N:0:TTAGGC Contig87793 11824 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14834:42890_1:N:0:TTAGGC Contig215522 349 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2522:43728_1:N:0:TTAGGC Contig134085 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15482:44944_1:N:0:TTAGGC Contig28243 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7438:46402_1:N:0:TTAGGC Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1975:47175_1:N:0:TTAGGC Contig526955 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3851:47209_1:N:0:TTAGGC Contig357025 210 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12782:50051_1:N:0:TTAGGC Contig177695 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15410:50139_1:N:0:TTAGGC Contig86484 3057 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17612:50949_1:N:0:TTAGGC Contig356944 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6301:51926_1:N:0:TTAGGC Contig453957 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2200:52252_1:N:0:TTAGGC Contig394386 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8257:52583_1:N:0:TTAGGC Contig506991 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4506:52898_1:N:0:TTAGGC Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5241:53786_1:N:0:TTAGGC Contig533827 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7717:54613_1:N:0:TTAGGC Contig322649 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2514:54841_1:N:0:TTAGGC Contig247792 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13309:55287_1:N:0:TTAGGC Contig40512 29079 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18342:55507_1:N:0:TTAGGC Contig679613 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4842:56031_1:N:0:TTAGGC Contig19580 5387 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4894:59902_1:N:0:TTAGGC Contig51168 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7623:61179_1:N:0:TTAGGC Contig289839 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9984:62015_1:N:0:TTAGGC Contig60519 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3211:62919_1:N:0:TTAGGC Contig589199 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19883:63789_1:N:0:TTAGGC Contig492319 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15153:64039_1:N:0:TTAGGC Contig43403 19744 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2188:64405_1:N:0:TTAGGC Contig529891 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14811:65829_1:N:0:TTAGGC Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16899:66562_1:N:0:TTAGGC Contig198911 1139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1919:69459_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5907:69820_1:N:0:TTAGGC Contig160526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17329:70565_1:N:0:TTAGGC Contig83613 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10990:71189_1:N:0:TTAGGC Contig110928 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8545:71490_1:N:0:TTAGGC Contig420178 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20172:73474_1:N:0:TTAGGC Contig334613 406 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18507:73861_1:N:0:TTAGGC Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15225:74224_1:N:0:TTAGGC Contig218157 5152 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19760:74144_1:N:0:TTAGGC Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9823:74660_1:N:0:TTAGGC Contig1113 17492 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10993:75059_1:N:0:TTAGGC Contig35400 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16266:75030_1:N:0:TTAGGC Contig143909 2188 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11857:76514_1:N:0:TTAGGC Contig311470 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13048:77714_1:N:0:TTAGGC Contig534085 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13669:77697_1:N:0:TTAGGC Contig676401 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6932:77962_1:N:0:TTAGGC Contig175716 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1102:78826_1:N:0:TTAGGC Contig577645 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7905:79016_1:N:0:TTAGGC Contig50279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17130:80094_1:N:0:TTAGGC Contig604831 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12618:80301_1:N:0:TTAGGC Contig449444 387 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16639:82111_1:N:0:TTAGGC Contig133604 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4289:82264_1:N:0:TTAGGC Contig54452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20329:88338_1:N:0:TTAGGC Contig319135 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2521:89448_1:N:0:TTAGGC Contig325954 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3326:89476_1:N:0:TTAGGC Contig146631 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7870:89678_1:N:0:TTAGGC Contig499830 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4544:90846_1:N:0:TTAGGC Contig503972 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6221:91755_1:N:0:TTAGGC Contig187571 511 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4736:92362_1:N:0:TTAGGC Contig205088 824 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9152:92438_1:N:0:TTAGGC Contig79333 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14265:92942_1:N:0:TTAGGC Contig362024 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18923:92871_1:N:0:TTAGGC Contig443495 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19232:93014_1:N:0:TTAGGC Contig560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15705:94335_1:N:0:TTAGGC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6852:95042_1:N:0:TTAGGC Contig404159 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7398:95478_1:N:0:TTAGGC Contig549878 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20415:97361_1:N:0:TTAGGC Contig546541 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5589:98273_1:N:0:TTAGGC Contig414154 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1416:98555_1:N:0:TTAGGC Contig430429 177 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12065:100384_1:N:0:TTAGGC Contig455009 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16312:3605_1:N:0:TTAGGC Contig25249 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6421:7204_1:N:0:TTAGGC Contig35496 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5095:7409_1:N:0:TTAGGC Contig552442 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20001:7701_1:N:0:TTAGGC Contig226281 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9957:9349_1:N:0:TTAGGC Contig9848 760 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10990:10639_1:N:0:TTAGGC Contig104498 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1216:11488_1:N:0:TTAGGC Contig41761 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19766:12370_1:N:0:TTAGGC Contig662056 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9552:12932_1:N:0:TTAGGC Contig537711 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12861:15542_1:N:0:TTAGGC Contig508383 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4621:16978_1:N:0:TTAGGC Contig464061 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14051:18818_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5201:19127_1:N:0:TTAGGC Contig589417 1596 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16865:20091_1:N:0:TTAGGC Contig101644 3646 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9458:20500_1:N:0:TTAGGC Contig384960 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15271:20416_1:N:0:TTAGGC Contig180679 445 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8713:20832_1:N:0:TTAGGC Contig93775 1630 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10840:20807_1:N:0:TTAGGC Contig205529 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3326:21711_1:N:0:TTAGGC Contig581536 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15564:21663_1:N:0:TTAGGC Contig297415 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20320:23169_1:N:0:TTAGGC Contig134754 4017 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9527:23597_1:N:0:TTAGGC Contig167329 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5621:24060_1:N:0:TTAGGC Contig271128 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18574:24648_1:N:0:TTAGGC Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15633:24780_1:N:0:TTAGGC Contig330574 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20130:28092_1:N:0:TTAGGC Contig271925 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:21256:28208_1:N:0:TTAGGC Contig221571 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15774:29481_1:N:0:TTAGGC Contig277839 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9455:30897_1:N:0:TTAGGC Contig394405 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5086:31356_1:N:0:TTAGGC Contig189230 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15935:31574_1:N:0:TTAGGC Contig280805 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18343:32044_1:N:0:TTAGGC Contig189109 1297 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10444:32739_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15202:32899_1:N:0:TTAGGC Contig353871 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7148:33520_1:N:0:TTAGGC Contig67905 4361 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16956:37842_1:N:0:TTAGGC Contig650695 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13530:39028_1:N:0:TTAGGC Contig144346 9313 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14648:39671_1:N:0:TTAGGC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9170:40480_1:N:0:TTAGGC Contig129461 2288 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13661:40288_1:N:0:TTAGGC Contig501412 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12828:40501_1:N:0:TTAGGC Contig54452 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17920:40836_1:N:0:TTAGGC Contig196271 467 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8491:41418_1:N:0:TTAGGC Contig573005 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3894:41627_1:N:0:TTAGGC Contig131342 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4802:42168_1:N:0:TTAGGC Contig460818 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19667:42020_1:N:0:TTAGGC Contig77477 4205 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19827:42658_1:N:0:TTAGGC Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11406:43035_1:N:0:TTAGGC Contig57447 3326 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14037:44638_1:N:0:TTAGGC Contig682021 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13669:45655_1:N:0:TTAGGC Contig132567 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16687:47922_1:N:0:TTAGGC Contig300740 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17286:47776_1:N:0:TTAGGC Contig72572 3955 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12748:48142_1:N:0:TTAGGC Contig90846 4712 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9609:50646_1:N:0:TTAGGC Contig5609 4497 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16773:50663_1:N:0:TTAGGC Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16598:50768_1:N:0:TTAGGC Contig125560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7847:52123_1:N:0:TTAGGC Contig108850 972 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 791230 (79.12%) aligned 0 times 109191 (10.92%) aligned exactly 1 time 99579 (9.96%) aligned >1 times 20.88% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 791595 (79.16%) aligned 0 times 109005 (10.90%) aligned exactly 1 time 99400 (9.94%) aligned >1 times 20.84% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 367748 (36.77%) aligned 0 times 219701 (21.97%) aligned exactly 1 time 412551 (41.26%) aligned >1 times 63.23% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 366470 (36.65%) aligned 0 times 219474 (21.95%) aligned exactly 1 time 414056 (41.41%) aligned >1 times 63.35% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 3_TTAGGC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 3_TTAGGC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 401984 Mapping efficiency: 40.2% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2274644 Total methylated C's in CpG context: 88563 Total methylated C's in CHG context: 6338 Total methylated C's in CHH context: 119475 Total methylated C's in Unknown context: 39 Total unmethylated C's in CpG context: 226901 Total unmethylated C's in CHG context: 415652 Total unmethylated C's in CHH context: 1417715 Total unmethylated C's in Unknown context: 384 C methylated in CpG context: 28.1% C methylated in CHG context: 1.5% C methylated in CHH context: 7.8% C methylated in Unknown context (CN or CHN): 9.2% Bismark completed in 0d 1h 6m 1s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/4_TGACCA_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 4_TGACCA_L001_R1_001_trimmed.fq.gz to 4_TGACCA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 4_TGACCA_L001_R1_001_trimmed.fq.gz to 4_TGACCA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 4_TGACCA_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 4_TGACCA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 4_TGACCA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 4_TGACCA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1150:2211_1:N:0:TGACCA 4 * 0 0 * * 0 0 TTTTTTTTGTGTTTGTAGTTATTATATATGT HHHJJJJJJGHHJJJIEHGIIJJJJEIGIII YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from 4_TGACCA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1150:2211_1:N:0:TGACCA 16 Contig29028_GA_converted 49637 0 31M * 0 0 ACATATATAATAACTACAAACACAAAAAAAA IIIGIEJJJJIIGHEIJJJHHGJJJJJJHHH AS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:10C20 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from 4_TGACCA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1150:2211_1:N:0:TGACCA 4 * 0 0 * * 0 0 TTTTTTTTATATTTATAATCATTATATATAT HHHJJJJJJGHHJJJIEHGIIJJJJEIGIII YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 4_TGACCA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1150:2211_1:N:0:TGACCA 4 * 0 0 * * 0 0 TTTTTTTTATATTTATAATCATTATATATAT HHHJJJJJJGHHJJJIEHGIIJJJJEIGIII YT:Z:UU >>> Writing bisulfite mapping results to 4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/4_TGACCA_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3694:3427_1:N:0:TGACCA Contig35829 9237 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12412:5358_1:N:0:TGACCA Contig71208 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7844:6549_1:N:0:TGACCA Contig340033 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8346:6919_1:N:0:TGACCA Contig585075 160 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3321:8384_1:N:0:TGACCA Contig449687 132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4313:8808_1:N:0:TGACCA Contig429725 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4340:9085_1:N:0:TGACCA Contig60066 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21033:10230_1:N:0:TGACCA Contig78699 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15793:11361_1:N:0:TGACCA Contig535823 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11954:14053_1:N:0:TGACCA Contig261847 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16641:18728_1:N:0:TGACCA Contig157762 461 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5957:18858_1:N:0:TGACCA Contig694427 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19901:19493_1:N:0:TGACCA Contig508609 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13550:20168_1:N:0:TGACCA Contig70297 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6241:21161_1:N:0:TGACCA Contig606266 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16717:23125_1:N:0:TGACCA Contig400727 158 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13379:23965_1:N:0:TGACCA Contig68472 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15306:23858_1:N:0:TGACCA Contig329075 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12423:24616_1:N:0:TGACCA Contig347350 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16529:25299_1:N:0:TGACCA Contig158704 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12862:27622_1:N:0:TGACCA Contig182344 339 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17164:27822_1:N:0:TGACCA Contig494415 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3459:28247_1:N:0:TGACCA Contig178534 1615 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5779:29067_1:N:0:TGACCA Contig664312 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14502:29379_1:N:0:TGACCA Contig683542 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13453:31453_1:N:0:TGACCA Contig315286 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19529:31630_1:N:0:TGACCA Contig202979 332 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20471:32450_1:N:0:TGACCA Contig14546 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16829:33764_1:N:0:TGACCA Contig110964 1379 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5229:35892_1:N:0:TGACCA Contig254969 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19929:36175_1:N:0:TGACCA Contig105539 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20799:38239_1:N:0:TGACCA Contig537264 311 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14259:40476_1:N:0:TGACCA Contig17057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16381:41749_1:N:0:TGACCA Contig186565 355 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7756:44063_1:N:0:TGACCA Contig229060 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6925:44786_1:N:0:TGACCA Contig317793 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15145:45299_1:N:0:TGACCA Contig687247 235 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4487:46244_1:N:0:TGACCA Contig107991 2034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3385:47467_1:N:0:TGACCA Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18069:47588_1:N:0:TGACCA Contig54772 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12342:48026_1:N:0:TGACCA Contig436348 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6475:49126_1:N:0:TGACCA Contig221393 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3365:50192_1:N:0:TGACCA Contig206279 398 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15316:50608_1:N:0:TGACCA Contig100444 1671 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13878:50911_1:N:0:TGACCA Contig76913 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20557:56391_1:N:0:TGACCA Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13857:56881_1:N:0:TGACCA Contig85962 6904 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1731:57909_1:N:0:TGACCA Contig598279 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14950:58061_1:N:0:TGACCA Contig263879 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19090:58244_1:N:0:TGACCA Contig473666 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11152:58592_1:N:0:TGACCA Contig24301 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18465:59227_1:N:0:TGACCA Contig75703 2857 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13642:60271_1:N:0:TGACCA Contig86113 2771 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4393:64833_1:N:0:TGACCA Contig651943 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2616:66890_1:N:0:TGACCA Contig224868 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7495:70662_1:N:0:TGACCA Contig52175 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4842:71811_1:N:0:TGACCA Contig462797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9742:72822_1:N:0:TGACCA Contig392045 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5143:73064_1:N:0:TGACCA Contig498172 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7018:75312_1:N:0:TGACCA Contig384107 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17387:77515_1:N:0:TGACCA Contig104498 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3061:78623_1:N:0:TGACCA Contig203931 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4855:81806_1:N:0:TGACCA Contig153506 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17660:82937_1:N:0:TGACCA Contig689540 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7107:83731_1:N:0:TGACCA Contig473272 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13634:84818_1:N:0:TGACCA Contig322052 404 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3146:87055_1:N:0:TGACCA Contig296069 106 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11964:87782_1:N:0:TGACCA Contig471186 456 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16027:87940_1:N:0:TGACCA Contig461584 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9085:88595_1:N:0:TGACCA Contig634870 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18512:89583_1:N:0:TGACCA Contig368312 256 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18768:91337_1:N:0:TGACCA Contig173771 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2018:91557_1:N:0:TGACCA Contig335110 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3464:93693_1:N:0:TGACCA Contig116681 5959 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14033:96924_1:N:0:TGACAA Contig86249 3910 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5781:99928_1:N:0:TGACCA Contig466298 234 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4752:2386_1:N:0:TGACCA Contig359990 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17951:4944_1:N:0:TGACCA Contig566837 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6033:5185_1:N:0:TGACCA Contig375270 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7411:9229_1:N:0:TGACCA Contig611659 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7272:10429_1:N:0:TGACCA Contig695489 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5279:10642_1:N:0:TGACCA Contig407304 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12610:10541_1:N:0:TGACCA Contig112264 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18984:10611_1:N:0:TGACCA Contig65629 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6783:10788_1:N:0:TGACCA Contig565776 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1154:11069_1:N:0:TGACCA Contig76535 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18036:11286_1:N:0:TGACCA Contig92463 1150 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11587:11923_1:N:0:TGACCA Contig400725 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4074:13357_1:N:0:TGACCA Contig228335 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4585:13818_1:N:0:TGACCA Contig591329 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16558:14946_1:N:0:TGACCA Contig183189 607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4664:16550_1:N:0:TGACCA Contig183189 606 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5931:16512_1:N:0:TGACCA Contig32961 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4623:17958_1:N:0:TGACCA Contig347849 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17061:22408_1:N:0:TGACCA Contig182116 5115 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2534:24580_1:N:0:TGACCA Contig672951 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5216:24799_1:N:0:TGACCA Contig620430 286 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5365:24789_1:N:0:TGACCA Contig639312 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8159:26204_1:N:0:TGACCA Contig592486 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11752:26106_1:N:0:TGACCA Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4356:27523_1:N:0:TGACCA Contig358084 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6106:29180_1:N:0:TGACCA Contig675953 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9917:29891_1:N:0:TGACCA Contig582394 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2234:30551_1:N:0:TGACCA Contig17084 5512 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17918:34924_1:N:0:TGACCA Contig604395 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8050:35613_1:N:0:TGACCA Contig4032 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15073:35560_1:N:0:TGACCA Contig195704 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14059:39060_1:N:0:TGACCA Contig188257 5032 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8759:39694_1:N:0:TGACCA Contig297056 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1139:42102_1:N:0:TGACCA Contig52263 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17760:42393_1:N:0:TGACCA Contig388499 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3642:42897_1:N:0:TGACCA Contig363777 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11725:43072_1:N:0:TGACCA Contig129663 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8527:44398_1:N:0:TGACCA Contig199610 756 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4694:48556_1:N:0:TGACCA Contig504043 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8311:48788_1:N:0:TGACCA Contig109897 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12263:48859_1:N:0:TGACCA Contig53492 7695 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18923:49439_1:N:0:TGACCA Contig121994 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2107:49510_1:N:0:TGACCA Contig2496 16446 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12731:52859_1:N:0:TGACCA Contig25202 12401 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3920:53052_1:N:0:TGACCA Contig607400 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15977:54028_1:N:0:TGACCA Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17609:57087_1:N:0:TGACCA Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14392:58516_1:N:0:TGACCA Contig660982 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18505:59767_1:N:0:TGACCA Contig477902 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17998:61787_1:N:0:TGACCA Contig297835 141 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4010:62121_1:N:0:TGACCA Contig526913 272 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17650:64482_1:N:0:TGACCA Contig398227 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6333:64760_1:N:0:TGACCA Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11589:66830_1:N:0:TGACCA Contig675953 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3036:73000_1:N:0:TGACCA Contig471935 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12923:73701_1:N:0:TGACCA Contig234894 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3867:77129_1:N:0:TGACCA Contig473217 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15425:77615_1:N:0:TGACCA Contig203034 485 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19888:77967_1:N:0:TGACCA Contig310027 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11027:78253_1:N:0:TGACCA Contig62190 6362 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2698:78510_1:N:0:TGACCA Contig131357 665 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5530:78608_1:N:0:TGACCA Contig88651 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18465:79487_1:N:0:TGACCA Contig428079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7354:82654_1:N:0:TGACCA Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14375:83852_1:N:0:TGACCA Contig116662 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9560:85560_1:N:0:TGACCA Contig311656 513 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8452:85892_1:N:0:TGACCA Contig234397 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9699:85966_1:N:0:TGACCA Contig14410 174 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19033:86533_1:N:0:TGACCA Contig67497 2320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21064:86637_1:N:0:TGACCA Contig44578 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2921:87823_1:N:0:TGACCA Contig85179 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5413:87910_1:N:0:TGACCA Contig25076 128 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5605:87870_1:N:0:TGACCA Contig622343 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6120:88264_1:N:0:TGACCA Contig139854 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21121:92757_1:N:0:TGACCA Contig608953 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8868:93253_1:N:0:TGACCA Contig34926 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11581:95355_1:N:0:TGACCA Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14190:95649_1:N:0:TGACCA Contig584847 113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3423:96932_1:N:0:TGACCA Contig113579 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9991:97217_1:N:0:TGACCA Contig2994 15670 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14126:97133_1:N:0:TGACCA Contig369306 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11322:98459_1:N:0:TGACCA Contig341771 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10151:100129_1:N:0:TGACCA Contig14063 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10888:3603_1:N:0:TGACCA Contig35645 987 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1395:6233_1:N:0:TGACCA Contig288214 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15991:6555_1:N:0:TGACCA Contig197442 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16063:9913_1:N:0:TGACCA Contig471648 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10633:10356_1:N:0:TGACCA Contig226780 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8782:10666_1:N:0:TGACCA Contig2939 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16535:10981_1:N:0:TGACCA Contig365270 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5643:11114_1:N:0:TGACCA Contig606655 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7968:12712_1:N:0:TGACCA Contig322516 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1355:13385_1:N:0:TGACCA Contig462402 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19831:13417_1:N:0:TGACCA Contig606672 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7486:16192_1:N:0:TGACCA Contig465077 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15249:16435_1:N:0:TGACCA Contig153670 1523 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19165:17382_1:N:0:TGACCA Contig249908 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18374:17705_1:N:0:TGACCA Contig618572 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3312:17957_1:N:0:TGACCA Contig540387 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1828:20928_1:N:0:TGACCA Contig56599 18017 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11055:21056_1:N:0:TGACCA Contig452003 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18201:25021_1:N:0:TGACCA Contig433927 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2611:26363_1:N:0:TGACCA Contig298238 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9994:27007_1:N:0:TGACCA Contig57918 32261 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5664:27581_1:N:0:TGACCA Contig73693 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10702:28823_1:N:0:TGACCA Contig132958 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10217:29158_1:N:0:TGACCA Contig689497 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13046:31044_1:N:0:TGACCA Contig418778 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15095:34502_1:N:0:TGACCA Contig539940 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7704:36086_1:N:0:TGACCA Contig598331 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10228:40940_1:N:0:TGACCA Contig602283 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3057:41961_1:N:0:TGACCA Contig305045 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4862:44128_1:N:0:TGACCA Contig145219 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6542:44204_1:N:0:TGACCA Contig337428 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3197:45145_1:N:0:TGACCA Contig8188 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6197:45244_1:N:0:TGACCA Contig233413 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7379:45247_1:N:0:TGACCA Contig226201 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16328:46168_1:N:0:TGACCA Contig19140 10459 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5551:47100_1:N:0:TGACCA Contig561647 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2584:47338_1:N:0:TGACCA Contig76945 8414 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18842:47674_1:N:0:TGACCA Contig381922 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6252:47879_1:N:0:TGACCA Contig31935 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4692:48693_1:N:0:TGACCA Contig209564 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8675:48936_1:N:0:TGACCA Contig450220 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21295:50260_1:N:0:TGACCA Contig635185 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14646:51659_1:N:0:TGACCA Contig62730 10860 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17580:52339_1:N:0:TGACCA Contig561977 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3726:52873_1:N:0:TGACCA Contig267175 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3097:54479_1:N:0:TGACCA Contig377956 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9167:54698_1:N:0:TGACCA Contig236801 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11965:55416_1:N:0:TGACCA Contig356374 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17800:55359_1:N:0:TGACCA Contig365380 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18449:55940_1:N:0:TGACCA Contig550590 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2578:56311_1:N:0:TGACCA Contig129461 2288 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6981:59869_1:N:0:TGACCA Contig509268 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17090:62990_1:N:0:TGACCA Contig577645 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6457:63536_1:N:0:TGACCA Contig48797 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10434:68156_1:N:0:TGACCA Contig587871 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17309:69325_1:N:0:TGACAA Contig46276 5981 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4252:69935_1:N:0:TGACCA Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15885:71163_1:N:0:TGACCA Contig88239 4153 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20828:71288_1:N:0:TGACCA Contig364325 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8733:71584_1:N:0:TGACCA Contig204385 842 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15328:72838_1:N:0:TGACCA Contig149838 2199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8521:73087_1:N:0:TGACCA Contig272849 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10122:73314_1:N:0:TGACCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5428:76050_1:N:0:TGACCA Contig113215 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18971:77531_1:N:0:TGACCA Contig445465 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5116:77772_1:N:0:TGACCA Contig121490 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9285:79893_1:N:0:TGACCA Contig11900 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16968:80278_1:N:0:TGACCA Contig25163 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13549:80742_1:N:0:TGACCA Contig152341 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7588:82294_1:N:0:TGACCA Contig188524 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17552:83200_1:N:0:TGACCA Contig624065 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18675:83642_1:N:0:TGACCA Contig4526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3212:84873_1:N:0:TGACCA Contig503672 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16029:86084_1:N:0:TGACCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13723:86297_1:N:0:TGACCA Contig112285 1350 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5931:88154_1:N:0:TGACCA Contig170528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18142:88069_1:N:0:TGACCA Contig187749 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5785:89390_1:N:0:TGACCA Contig54452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3062:89875_1:N:0:TGACCA Contig586655 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15506:92658_1:N:0:TGACCA Contig155083 5363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1796:93533_1:N:0:TGACCA Contig204733 425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9806:94073_1:N:0:TGACCA Contig83437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6548:94462_1:N:0:TGACCA Contig183728 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12386:94494_1:N:0:TGACCA Contig501279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6724:95272_1:N:0:TGACCA Contig340208 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8524:95452_1:N:0:TGACCA Contig542485 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5668:96408_1:N:0:TGACCA Contig474522 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3793:97607_1:N:0:TGACCA Contig357 32780 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10023:98591_1:N:0:TGACCA Contig239742 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16882:99209_1:N:0:TGACCA Contig325954 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11547:100482_1:N:0:TGACCA Contig484187 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9255:2398_1:N:0:TGACCA Contig425444 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13822:2957_1:N:0:TGACCA Contig128834 2198 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3961:3310_1:N:0:TGACCA Contig136171 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14394:5863_1:N:0:TGACCA Contig28621 15589 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9759:11040_1:N:0:TGACCA Contig31494 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10794:12755_1:N:0:TGACCA Contig99807 3834 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15236:15042_1:N:0:TGACCA Contig207336 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7858:17571_1:N:0:TGACCA Contig437770 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12736:18693_1:N:0:TGACCA Contig200098 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12695:18705_1:N:0:TGACCA Contig200098 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9698:19839_1:N:0:TGACCA Contig91604 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13395:22503_1:N:0:TGACCA Contig109246 2044 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16144:26430_1:N:0:TGACCA Contig552636 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9173:26571_1:N:0:TGACCA Contig357816 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6622:27775_1:N:0:TGACCA Contig530074 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12531:28715_1:N:0:TGACCA Contig13033 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10879:29342_1:N:0:TGACCA Contig279750 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9081:29779_1:N:0:TGACCA Contig94182 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15711:30154_1:N:0:TGACCA Contig569474 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15823:30726_1:N:0:TGACCA Contig429462 106 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1628:32558_1:N:0:TGACCA Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9945:32941_1:N:0:TGACCA Contig553429 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14239:34687_1:N:0:TGACCA Contig323398 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3914:38206_1:N:0:TGACCA Contig657 21519 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11045:38468_1:N:0:TGACCA Contig94742 8681 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1905:41535_1:N:0:TGACCA Contig50451 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4217:41602_1:N:0:TGACCA Contig528890 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18756:45547_1:N:0:TGACCA Contig416249 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1602:46194_1:N:0:TGACCA Contig462294 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3498:46365_1:N:0:TGACCA Contig536712 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8533:48745_1:N:0:TGACCA Contig568937 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17334:50592_1:N:0:TGACCA Contig160526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19947:50649_1:N:0:TGACCA Contig336299 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1432:52154_1:N:0:TAACCA Contig179658 675 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6183:54238_1:N:0:TGACCA Contig541147 119 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6279:54251_1:N:0:TGACCA Contig227755 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1105:57301_1:N:0:TGACCA Contig260373 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8178:58176_1:N:0:TGACCA Contig310070 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17728:58004_1:N:0:TGACCA Contig142584 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20557:65196_1:N:0:TGACCA Contig394412 413 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2385:66103_1:N:0:TGACCA Contig26364 27002 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8485:66614_1:N:0:TGACCA Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12666:69876_1:N:0:TGACCA Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8675:70379_1:N:0:TGACCA Contig526730 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6460:71533_1:N:0:TGACCA Contig468213 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2154:72233_1:N:0:TGACCA Contig55412 12373 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17169:72562_1:N:0:TGACCA Contig581728 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19224:75709_1:N:0:TGACCA Contig237165 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11463:75878_1:N:0:TGACCA Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19483:75987_1:N:0:TGACCA Contig75356 801 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3694:76356_1:N:0:TGACCA Contig416765 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6137:79231_1:N:0:TGACCA Contig647196 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13542:79267_1:N:0:TGACCA Contig428154 173 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11246:82021_1:N:0:TGACCA Contig262166 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7716:82585_1:N:0:TGACCA Contig612911 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16990:82611_1:N:0:TGACCA Contig555437 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20894:82876_1:N:0:TGACCA Contig358256 174 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9151:85652_1:N:0:TGACCA Contig671433 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16608:89118_1:N:0:TGACCA Contig648674 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1703:89380_1:N:0:TGACCA Contig487961 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7949:89964_1:N:0:TGACCA Contig534404 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13418:91719_1:N:0:TGACCA Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18362:93914_1:N:0:TGACCA Contig669098 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10074:94283_1:N:0:TGACCA Contig667526 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10079:95539_1:N:0:TGACCA Contig98971 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17573:97360_1:N:0:TGACCA Contig625798 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6879:97627_1:N:0:TGACCA Contig69406 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3817:97910_1:N:0:TGACCA Contig157719 676 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10557:98103_1:N:0:TGACCA Contig659914 125 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17924:98562_1:N:0:TGACCA Contig471507 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19594:2965_1:N:0:TGACCA Contig649713 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8623:3551_1:N:0:TGACCA Contig565776 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13092:4580_1:N:0:TGACCA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21225:6340_1:N:0:TGACCA Contig467201 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12919:9758_1:N:0:TGACCA Contig61589 13319 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18826:9952_1:N:0:TGACCA Contig13212 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17084:11118_1:N:0:TGACCA Contig57764 7819 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8313:16957_1:N:0:TGACCA Contig385670 129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16280:16811_1:N:0:TGACCA Contig274241 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15149:18259_1:N:0:TGACCA Contig657013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12590:20127_1:N:0:TGACCA Contig634443 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6041:22969_1:N:0:TGACCA Contig12275 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15854:23051_1:N:0:TGACCA Contig97278 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11665:24148_1:N:0:TGACCA Contig75414 2892 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17140:26403_1:N:0:TGACCA Contig81765 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17142:26458_1:N:0:TGACCA Contig278711 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3985:26501_1:N:0:TGACCA Contig257286 822 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2612:27800_1:N:0:TGACCA Contig350866 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3652:28311_1:N:0:TGACCA Contig676039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1677:28691_1:N:0:TGACCA Contig257542 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2147:29429_1:N:0:TGACCA Contig5827 13716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3896:31161_1:N:0:TGACCA Contig58165 2668 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2437:32320_1:N:0:TGACCA Contig113399 883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5940:33856_1:N:0:TGACCA Contig296864 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9273:35685_1:N:0:TGACCA Contig483448 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19910:36733_1:N:0:TGACCA Contig512497 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18982:36915_1:N:0:TGACCA Contig210877 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4713:38434_1:N:0:TGACCA Contig99733 3385 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3875:41278_1:N:0:TGACCA Contig136171 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6590:41275_1:N:0:TGACCA Contig178013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16236:42629_1:N:0:TGACCA Contig450003 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1487:43448_1:N:0:TGACCA Contig271437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2258:43302_1:N:0:TGACCA Contig324470 143 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17595:43683_1:N:0:TGACCA Contig82764 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5720:45057_1:N:0:TGACCA Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11586:45031_1:N:0:TGACCA Contig385412 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9250:45309_1:N:0:TGACCA Contig432337 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6736:46711_1:N:0:TGACCA Contig146483 3940 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6040:53049_1:N:0:TGACCA Contig161448 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9163:54223_1:N:0:TGACCA Contig316909 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3105:57023_1:N:0:TGACCA Contig64118 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8144:58619_1:N:0:TGACCA Contig270296 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16693:58719_1:N:0:TGACCA Contig266358 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2631:58858_1:N:0:TGACCA Contig446173 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18736:61666_1:N:0:TGACCA Contig154388 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3550:61933_1:N:0:TGACCA Contig125017 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11334:62349_1:N:0:TGACCA Contig340497 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17175:64055_1:N:0:TGACCA Contig536442 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12910:66175_1:N:0:TGACCA Contig277425 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16916:67562_1:N:0:TGACCA Contig16367 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1705:68088_1:N:0:TGACCA Contig222858 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15150:68788_1:N:0:TGACCA Contig56827 29197 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15680:69515_1:N:0:TGACCA Contig438052 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2309:70235_1:N:0:TGACCA Contig448129 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14774:70357_1:N:0:TGACCA Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19351:71158_1:N:0:TGACCA Contig9386 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9702:71554_1:N:0:TGACCA Contig34759 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18992:72112_1:N:0:TGACCA Contig436401 168 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6517:73967_1:N:0:TGACCA Contig56737 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18598:74032_1:N:0:TGACCA Contig358759 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2594:78161_1:N:0:TGACCA Contig91197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8751:82200_1:N:0:TGACCA Contig69363 2718 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21144:83864_1:N:0:TGACCA Contig526078 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17544:84811_1:N:0:TGACCA Contig581639 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19694:85246_1:N:0:TGACCA Contig113759 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18697:85590_1:N:0:TGACCA Contig364308 128 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8309:86914_1:N:0:TGACCA Contig4032 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12912:87601_1:N:0:TGACCA Contig16985 787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7315:89263_1:N:0:TGACCA Contig307552 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18084:90908_1:N:0:TGACCA Contig489577 301 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18259:92861_1:N:0:TGACCA Contig525813 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7632:94082_1:N:0:TGACCA Contig667526 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12303:94941_1:N:0:TGACCA Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2199:95088_1:N:0:TGACCA Contig94716 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1494:95571_1:N:0:TGACCA Contig329381 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14657:96067_1:N:0:TGACCA Contig33681 15405 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13964:98478_1:N:0:TGACCA Contig188086 481 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2053:98643_1:N:0:TGACCA Contig593592 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7552:98580_1:N:0:TGACCA Contig226093 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14319:98627_1:N:0:TGACCA Contig112264 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20103:99185_1:N:0:TGACCA Contig89845 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15835:100821_1:N:0:TGACCA Contig40719 22274 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7478:3183_1:N:0:TGACCA Contig366142 107 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13843:4250_1:N:0:TGACCA Contig55038 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18174:5122_1:N:0:TGACCA Contig418566 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10640:5393_1:N:0:TGACCA Contig572313 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20720:5559_1:N:0:TGACCA Contig429936 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4522:7014_1:N:0:TGACCA Contig2901 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18471:7306_1:N:0:TGACCA Contig10893 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7245:8579_1:N:0:TGACCA Contig198366 506 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3526:12020_1:N:0:TGACCA Contig268146 142 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17653:12309_1:N:0:TGACCA Contig96947 10883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18332:14573_1:N:0:TGACCA Contig521042 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9274:15184_1:N:0:TGACCA Contig56256 11236 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19213:15159_1:N:0:TGACCA Contig582114 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18605:16754_1:N:0:TGACCA Contig12338 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8470:18347_1:N:0:TGACCA Contig622798 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5106:18592_1:N:0:TGACCA Contig382894 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14615:18651_1:N:0:TGACCA Contig498074 165 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7210:19149_1:N:0:TGACCA Contig521979 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2614:19749_1:N:0:TGACCA Contig200522 767 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8846:19761_1:N:0:TGACCA Contig130909 1264 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2113:20886_1:N:0:TGACCA Contig3172 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2228:21801_1:N:0:TGACCA Contig322879 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20381:22178_1:N:0:TGACCA Contig184487 748 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3850:22256_1:N:0:TGACCA Contig413161 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3869:22286_1:N:0:TGACCA Contig413161 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2213:22591_1:N:0:TGACCA Contig530378 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12912:23250_1:N:0:TGACCA Contig192971 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13146:23265_1:N:0:TGACCA Contig427046 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10707:23874_1:N:0:TGACCA Contig499949 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18472:24554_1:N:0:TGACCA Contig205813 1523 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7944:26001_1:N:0:TGACCA Contig77494 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16234:27276_1:N:0:TGACCA Contig364609 170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6810:27876_1:N:0:TGACCA Contig450365 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16890:28833_1:N:0:TGACCA Contig104819 3395 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19280:29479_1:N:0:TGACCA Contig77612 3233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15347:30394_1:N:0:TGACCA Contig285840 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12523:31700_1:N:0:TGACCA Contig561567 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5939:32188_1:N:0:TGACCA Contig556038 409 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9684:32436_1:N:0:TGACCA Contig320130 137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3670:33585_1:N:0:TGACCA Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7224:33972_1:N:0:TGACCA Contig390735 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1236:35134_1:N:0:TGACCA Contig427090 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4031:35801_1:N:0:TGACCA Contig183189 606 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10624:36206_1:N:0:TGACCA Contig679681 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4746:39057_1:N:0:TGACCA Contig169157 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13377:40268_1:N:0:TGACCA Contig13722 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5252:41016_1:N:0:TGACCA Contig10170 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13513:41014_1:N:0:TGACCA Contig190301 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2412:42967_1:N:0:TGACCA Contig563932 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6784:44026_1:N:0:TGACCA Contig669916 196 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6757:44056_1:N:0:TGACCA Contig669916 196 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14434:45592_1:N:0:TGACCA Contig310245 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7401:46035_1:N:0:TGACCA Contig465253 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8064:47983_1:N:0:TGACCA Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10570:49488_1:N:0:TGACCA Contig21522 5266 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6187:50458_1:N:0:TGACCA Contig444114 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4596:50758_1:N:0:TGACCA Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13006:51202_1:N:0:TGACCA Contig165915 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8311:53558_1:N:0:TGACCA Contig473994 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10013:54248_1:N:0:TGACCA Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11454:54674_1:N:0:TGACCA Contig177043 974 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13924:54942_1:N:0:TGACCA Contig610299 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10109:59591_1:N:0:TGACCA Contig93208 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3932:60147_1:N:0:TGACAA Contig556038 409 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10974:60081_1:N:0:TGACCA Contig383660 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12893:61350_1:N:0:TGACCA Contig187590 6767 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3798:63291_1:N:0:TGACCA Contig313365 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4217:64508_1:N:0:TGACCA Contig510879 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11133:64755_1:N:0:TGACCA Contig437561 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8385:65457_1:N:0:TGACCA Contig582440 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11175:66627_1:N:0:TGACCA Contig516232 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12156:66763_1:N:0:TGACCA Contig151103 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8430:67702_1:N:0:TGACCA Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6582:67835_1:N:0:TGACCA Contig156042 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2418:68753_1:N:0:TGACCA Contig428436 125 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8589:69507_1:N:0:TGACCA Contig77955 1766 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3708:72351_1:N:0:TGACCA Contig399114 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15756:72447_1:N:0:TGACCA Contig61099 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19045:73519_1:N:0:TGACCA Contig493510 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13841:73769_1:N:0:TGACCA Contig143724 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19505:74360_1:N:0:TGACCA Contig257690 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5686:74941_1:N:0:TGACCA Contig373734 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11236:76185_1:N:0:TGACCA Contig548894 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8499:77156_1:N:0:TGACCA Contig512524 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2725:78403_1:N:0:TGACCA Contig549480 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7512:80897_1:N:0:TGACCA Contig360542 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12636:89134_1:N:0:TGACCA Contig590264 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8690:89286_1:N:0:TGACCA Contig429451 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17116:91690_1:N:0:TGACCA Contig188364 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18098:93709_1:N:0:TGACCA Contig282460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2865:95100_1:N:0:TGACCA Contig399828 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19435:99230_1:N:0:TGACCA Contig578700 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3671:99631_1:N:0:TGACCA Contig530919 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4677:100316_1:N:0:TGACCA Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4475:100671_1:N:0:TGACCA Contig335108 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3372:4351_1:N:0:TGACCA Contig142318 2422 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15038:4434_1:N:0:TGACCA Contig367689 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16550:4568_1:N:0:TGACCA Contig340208 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18946:4880_1:N:0:TGACCA Contig379733 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1275:7875_1:N:0:TGACCA Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13971:10709_1:N:0:TGACCA Contig684652 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4593:11222_1:N:0:TGACCA Contig233955 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12619:11633_1:N:0:TGACCA Contig538108 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7346:12192_1:N:0:TGACCA Contig141762 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17092:13641_1:N:0:TAACCA Contig102028 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11049:14039_1:N:0:TGACCA Contig474606 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2694:14688_1:N:0:TGACCA Contig288205 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10581:15750_1:N:0:TGACCA Contig537990 182 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10012:20225_1:N:0:TGACCA Contig262483 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3639:21231_1:N:0:TGACCA Contig213688 504 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10680:21260_1:N:0:TGACCA Contig155406 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16463:21289_1:N:0:TGACCA Contig27089 25246 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18152:22570_1:N:0:TGACCA Contig660656 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7174:23099_1:N:0:TGACCA Contig30928 139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9787:23368_1:N:0:TGACCA Contig191793 686 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19524:23935_1:N:0:TGACCA Contig273127 133 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8920:25194_1:N:0:TGACCA Contig59209 1646 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2541:25835_1:N:0:TGACCA Contig473270 207 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11674:27471_1:N:0:TGACCA Contig182721 3624 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6288:28260_1:N:0:TGACCA Contig274226 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11002:29245_1:N:0:TGACCA Contig221835 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1732:32336_1:N:0:TGACCA Contig448602 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5980:33738_1:N:0:TGACCA Contig282704 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6199:35737_1:N:0:TGACCA Contig664427 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6551:36096_1:N:0:TGACCA Contig217524 449 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9072:38560_1:N:0:TGACCA Contig639626 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18961:38620_1:N:0:TGACCA Contig628534 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7236:39404_1:N:0:TGACCA Contig61589 13319 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4175:40450_1:N:0:TGACCA Contig634550 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17384:40444_1:N:0:TGACCA Contig472879 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14537:40949_1:N:0:TGACCA Contig328419 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9702:41378_1:N:0:TGACCA Contig336539 176 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19809:42145_1:N:0:TGACCA Contig318385 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15743:42497_1:N:0:TGACCA Contig330735 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18919:43384_1:N:0:TGACCA Contig659416 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19541:43958_1:N:0:TGACCA Contig172031 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5391:44087_1:N:0:TGACCA Contig595261 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13247:45121_1:N:0:TGACCA Contig37857 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5441:46685_1:N:0:TGACCA Contig120354 776 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3466:50255_1:N:0:TGACCA Contig342807 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3263:51300_1:N:0:TGACCA Contig237313 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16924:52056_1:N:0:TGACCA Contig157054 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20124:53093_1:N:0:TGACCA Contig263331 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5397:53927_1:N:0:TGACCA Contig21483 8466 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13921:55692_1:N:0:TGACCA Contig99098 5113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14862:60633_1:N:0:TGACCA Contig231604 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19860:60962_1:N:0:TGACCA Contig546688 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20044:62309_1:N:0:TGACCA Contig211103 764 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21018:62973_1:N:0:TGACCA Contig512713 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1860:64110_1:N:0:TGACCA Contig318159 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19692:65427_1:N:0:TGACCA Contig26049 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18874:65539_1:N:0:TGACCA Contig137089 1037 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13499:66312_1:N:0:TGACCA Contig252813 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11150:67061_1:N:0:TGACCA Contig190804 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7678:67260_1:N:0:TGACCA Contig133832 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12359:69476_1:N:0:TGACCA Contig64114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13576:69484_1:N:0:TGACCA Contig79952 4684 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11843:69553_1:N:0:TGACCA Contig343875 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2605:70499_1:N:0:TGACCA Contig356021 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3571:75393_1:N:0:TGACCA Contig356338 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7501:75337_1:N:0:TGACCA Contig232722 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12042:78527_1:N:0:TGACCA Contig202212 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18338:82171_1:N:0:TGACCA Contig441274 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1509:82440_1:N:0:TGACCA Contig5445 11538 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7013:82939_1:N:0:TGACCA Contig226163 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4752:86216_1:N:0:TGACCA Contig339002 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6992:86775_1:N:0:TGACCA Contig12185 334 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10149:87243_1:N:0:TGACCA Contig379523 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19244:87412_1:N:0:TGACCA Contig331976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16564:87996_1:N:0:TGACCA Contig654616 430 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7037:88843_1:N:0:TGACCA Contig517949 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12610:90178_1:N:0:TGACCA Contig426413 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15461:90454_1:N:0:TGACCA Contig96316 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2939:91526_1:N:0:TGACCA Contig35115 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19611:93194_1:N:0:TGACCA Contig274888 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10080:93432_1:N:0:TGACCA Contig276033 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18011:95036_1:N:0:TGACCA Contig7770 2455 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19668:95306_1:N:0:TGACCA Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15223:95654_1:N:0:TGACCA Contig597093 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3768:96371_1:N:0:TGACCA Contig51477 9293 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12690:96271_1:N:0:TGACCA Contig595703 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3773:96528_1:N:0:TGACCA Contig21940 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8285:96587_1:N:0:TGACCA Contig58603 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8292:96600_1:N:0:TGACCA Contig58603 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15703:97662_1:N:0:TGACCA Contig219467 2677 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2836:99409_1:N:0:TGACCA Contig9576 780 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7627:4756_1:N:0:TGACCA Contig685274 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7318:8587_1:N:0:TGACCA Contig327707 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7350:8611_1:N:0:TGACCA Contig327707 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2268:9006_1:N:0:TGACCA Contig77609 5367 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8354:10566_1:N:0:TGACCA Contig344283 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17866:11531_1:N:0:TGACCA Contig252813 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9741:13828_1:N:0:TGACCA Contig533087 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11385:14446_1:N:0:TGACCA Contig695228 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4986:14517_1:N:0:TGACCA Contig113906 1331 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13644:14916_1:N:0:TGACCA Contig692713 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7367:15875_1:N:0:TGACCA Contig63468 11825 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20324:15932_1:N:0:TGACCA Contig51048 5207 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2383:17125_1:N:0:TGACCA Contig230508 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18806:17468_1:N:0:TGACCA Contig103001 2538 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12606:17780_1:N:0:TGACCA Contig238287 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12913:18499_1:N:0:TGACCA Contig49533 4336 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10946:18901_1:N:0:TGACAA Contig691560 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7217:20856_1:N:0:TGACCA Contig603921 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16093:21028_1:N:0:TGACCA Contig201365 1432 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11668:21300_1:N:0:TGACCA Contig16579 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5811:21539_1:N:0:TGACCA Contig683772 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2523:23621_1:N:0:TGACCA Contig256745 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10299:23822_1:N:0:TGACCA Contig129542 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11113:24223_1:N:0:TGACCA Contig84290 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13553:24507_1:N:0:TGACCA Contig266632 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17417:24576_1:N:0:TGACCA Contig113400 1459 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6866:24884_1:N:0:TGACCA Contig98325 1135 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1842:25658_1:N:0:TGACCA Contig504043 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5730:25788_1:N:0:TGACCA Contig367943 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4601:28442_1:N:0:TGACCA Contig42278 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4426:29357_1:N:0:TGACCA Contig27147 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8568:30245_1:N:0:TGACCA Contig587689 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21263:31329_1:N:0:TGACCA Contig467490 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7237:31760_1:N:0:TGACCA Contig311656 513 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9974:32630_1:N:0:TGACCA Contig561977 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16892:32860_1:N:0:TGACCA Contig143659 1038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1900:33167_1:N:0:TCACCA Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8105:33078_1:N:0:TGACCA Contig92398 13787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8411:33310_1:N:0:TGACCA Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13534:34193_1:N:0:TGACCA Contig513901 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16136:34043_1:N:0:TGACCA Contig512249 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11835:34554_1:N:0:TGACCA Contig669508 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6513:35811_1:N:0:TGACCA Contig467791 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9579:35791_1:N:0:TGACCA Contig141661 9766 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17837:35817_1:N:0:TGACCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11832:36309_1:N:0:TGACCA Contig175522 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1307:39022_1:N:0:TGACCA Contig585258 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10468:39119_1:N:0:TGACCA Contig63507 10577 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15603:40433_1:N:0:TGACCA Contig76256 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12189:41609_1:N:0:TGACCA Contig204499 656 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19913:42032_1:N:0:TGACCA Contig414612 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13975:42553_1:N:0:TGACCA Contig559664 757 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15046:42571_1:N:0:TGACCA Contig26870 5055 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7211:43497_1:N:0:TGACCA Contig476381 120 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14612:43796_1:N:0:TGACCA Contig154229 990 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5086:44571_1:N:0:TGACCA Contig27060 237 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14945:47256_1:N:0:TGACCA Contig360607 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19013:47845_1:N:0:TGACCA Contig262483 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21122:49358_1:N:0:TGACCA Contig527164 3861 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15887:50609_1:N:0:TGACCA Contig171606 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17557:50989_1:N:0:TGACCA Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5153:56310_1:N:0:TGACCA Contig221799 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20334:57266_1:N:0:TGACCA Contig59209 1646 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15837:59898_1:N:0:TGACCA Contig221011 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16560:61512_1:N:0:TGACCA Contig228636 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19722:63574_1:N:0:TGACCA Contig323876 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16845:64120_1:N:0:TGACCA Contig45852 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3907:64432_1:N:0:TGACCA Contig687501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4196:66774_1:N:0:TGACCA Contig524583 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2178:68621_1:N:0:TGACCA Contig238442 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13838:70031_1:N:0:TGACCA Contig587299 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16289:72345_1:N:0:TGACCA Contig10581 2092 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9530:73175_1:N:0:TGACCA Contig295524 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16534:73888_1:N:0:TGACCA Contig54452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13021:75956_1:N:0:TGACCA Contig226725 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15629:76586_1:N:0:TGACCA Contig395160 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15942:78549_1:N:0:TGACCA Contig481421 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9630:81829_1:N:0:TGACCA Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5288:87136_1:N:0:TGACCA Contig448035 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9906:87771_1:N:0:TGACCA Contig300694 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19695:89097_1:N:0:TGACCA Contig539940 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5398:92792_1:N:0:TGACCA Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7006:94691_1:N:0:TGACCA Contig287654 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14567:97323_1:N:0:TGACCA Contig538004 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18884:99555_1:N:0:TGACCA Contig328419 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16548:100442_1:N:0:TGACCA Contig539459 271 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14486:100866_1:N:0:TGACCA Contig578412 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19137:100816_1:N:0:TGACCA Contig12009 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20121:100799_1:N:0:TGACCA Contig312699 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11746:101045_1:N:0:TGACCA Contig245890 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10717:2474_1:N:0:TGACCA Contig357354 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12583:2353_1:N:0:TGACCA Contig592325 156 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15650:2452_1:N:0:TGACCA Contig2939 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6248:3525_1:N:0:TGACCA Contig136171 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8523:4812_1:N:0:TGACCA Contig616470 120 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3932:5414_1:N:0:AGACCA Contig94805 10171 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8890:6405_1:N:0:TGACCA Contig16390 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2626:7315_1:N:0:TGACCA Contig329266 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13872:8030_1:N:0:TGACCA Contig221912 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10339:8268_1:N:0:TGACCA Contig50569 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14266:9616_1:N:0:TGACCA Contig385981 138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11155:9892_1:N:0:TGACCA Contig4247 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8058:10730_1:N:0:TGACCA Contig8329 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2530:11363_1:N:0:TGACCA Contig149715 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2789:12047_1:N:0:TGACCA Contig312365 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14523:16029_1:N:0:TGACCA Contig635574 118 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8114:20107_1:N:0:TGACCA Contig670023 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9114:20779_1:N:0:TGACCA Contig395573 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17057:21259_1:N:0:TGACCA Contig180303 2668 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2188:23677_1:N:0:TGACCA Contig80459 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8924:24395_1:N:0:TGACCA Contig275074 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7564:24849_1:N:0:TGACCA Contig396077 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11450:28077_1:N:0:TGACCA Contig143583 4038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7988:29478_1:N:0:TGACCA Contig62815 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7903:32569_1:N:0:TGACCA Contig351483 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1670:33074_1:N:0:TGACCA Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5416:33170_1:N:0:TGACCA Contig324252 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:21262:35556_1:N:0:TGACCA Contig212839 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3278:35934_1:N:0:TGACCA Contig594411 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2425:36838_1:N:0:TGACCA Contig81239 2277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4442:37301_1:N:0:TGACCA Contig632133 1799 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8463:38370_1:N:0:TGACCA Contig9228 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2056:39050_1:N:0:TGACCA Contig320822 117 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5096:40369_1:N:0:TGACCA Contig100995 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1895:41078_1:N:0:TGACCA Contig649058 307 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11107:41785_1:N:0:TGACCA Contig495698 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16219:42925_1:N:0:TGACCA Contig130389 2452 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1997:44867_1:N:0:TGACCA Contig667803 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1776:46948_1:N:0:TGACCA Contig591391 187 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14913:46796_1:N:0:TGACCA Contig542057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2901:47226_1:N:0:TGACCA Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14507:47121_1:N:0:TGAACA Contig248131 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20697:47118_1:N:0:TGACCA Contig238828 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14437:48326_1:N:0:TGACCA Contig460744 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7435:48986_1:N:0:TGACCA Contig607338 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10708:48975_1:N:0:TGACCA Contig525282 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15065:49382_1:N:0:TGACCA Contig352258 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12483:49921_1:N:0:TGACCA Contig664643 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16023:49872_1:N:0:TGACCA Contig78439 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12549:50503_1:N:0:TGACCA Contig167884 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1448:51476_1:N:0:TGACCA Contig430476 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1294:51847_1:N:0:TGACCA Contig670452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19422:53490_1:N:0:TGACCA Contig102858 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8423:54966_1:N:0:TGACCA Contig260648 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12306:54844_1:N:0:TGACCA Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15386:55598_1:N:0:TGACCA Contig473243 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15071:55755_1:N:0:TGACCA Contig351022 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3927:56499_1:N:0:TGACCA Contig433153 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16043:58459_1:N:0:TGACCA Contig9386 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15120:58663_1:N:0:TGACCA Contig269318 137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14992:59315_1:N:0:TGACCA Contig258491 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 788749 (78.87%) aligned 0 times 110430 (11.04%) aligned exactly 1 time 100821 (10.08%) aligned >1 times 21.13% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 361286 (36.13%) aligned 0 times 219700 (21.97%) aligned exactly 1 time 419014 (41.90%) aligned >1 times 63.87% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 789761 (78.98%) aligned 0 times 109808 (10.98%) aligned exactly 1 time 100431 (10.04%) aligned >1 times 21.02% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 361479 (36.15%) aligned 0 times 220784 (22.08%) aligned exactly 1 time 417737 (41.77%) aligned >1 times 63.85% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 4_TGACCA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 4_TGACCA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 403617 Mapping efficiency: 40.4% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2264438 Total methylated C's in CpG context: 89788 Total methylated C's in CHG context: 5604 Total methylated C's in CHH context: 114714 Total methylated C's in Unknown context: 34 Total unmethylated C's in CpG context: 217439 Total unmethylated C's in CHG context: 412460 Total unmethylated C's in CHH context: 1424433 Total unmethylated C's in Unknown context: 356 C methylated in CpG context: 29.2% C methylated in CHG context: 1.3% C methylated in CHH context: 7.5% C methylated in Unknown context (CN or CHN): 8.7% Bismark completed in 0d 1h 27m 41s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/5_ACAGTG_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 5_ACAGTG_L001_R1_001_trimmed.fq.gz to 5_ACAGTG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 5_ACAGTG_L001_R1_001_trimmed.fq.gz to 5_ACAGTG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 5_ACAGTG_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 5_ACAGTG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 5_ACAGTG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 5_ACAGTG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1437:2182_1:N:0:ACAGTG 4 * 0 0 * * 0 0 GGGGGGGGTTTTTGGAAAAAAGGGGGTGGTT BBBBBBB-)7??(&)(8>8()&(??7)-BBBBBBB AS:i:-6 XS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:29A1 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 5_ACAGTG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1437:2182_1:N:0:ACAGTG 0 Contig25954_GA_converted 25879 0 31M * 0 0 AAAAAAAATTTTTAAAAAAAAAAAAATAATT BBBBBBB-)7??(&)(8>>> Writing bisulfite mapping results to 5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/5_ACAGTG_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16806:2710_1:N:0:ACAGTG Contig454122 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20981:3390_1:N:0:ACAGTG Contig2295 17911 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13882:4867_1:N:0:ACAGTG Contig505879 340 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19004:4915_1:N:0:ACAGTG Contig75356 801 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6682:5560_1:N:0:ACAGTG Contig120070 1878 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14323:6469_1:N:0:ACAGTG Contig460235 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6425:6643_1:N:0:ACAGTG Contig635818 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17042:8935_1:N:0:ACAGTG Contig219029 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20039:8879_1:N:0:ACAGTG Contig60042 4731 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2559:9051_1:N:0:ACAGTG Contig271437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16117:14124_1:N:0:ACAGTG Contig233991 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19089:15560_1:N:0:ACAGTG Contig616320 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17349:19528_1:N:0:ACAGTG Contig111700 13072 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19948:19671_1:N:0:ACAGTG Contig414343 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13740:20801_1:N:0:ACAGTG Contig8687 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13349:21594_1:N:0:ACAGTG Contig427495 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14477:21997_1:N:0:ACAGTG Contig13 84904 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10979:25401_1:N:0:ACAGTG Contig32433 760 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10071:27324_1:N:0:ACAGTG Contig311656 513 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16926:31417_1:N:0:ACAGTG Contig642960 227 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13263:32357_1:N:0:ACAGTG Contig360262 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3854:35929_1:N:0:ACAGTG Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12102:37413_1:N:0:ACAGTG Contig619611 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20206:37419_1:N:0:ACAGTG Contig188524 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14577:37974_1:N:0:ACAGTG Contig16748 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10922:38593_1:N:0:ACAGTG Contig141409 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7407:39810_1:N:0:ACAGTG Contig656202 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6906:40898_1:N:0:ACAGTG Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15596:41632_1:N:0:ACAGTG Contig120722 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8782:42656_1:N:0:ACAGTG Contig139048 1034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15387:43162_1:N:0:ACAGTG Contig412615 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11381:43395_1:N:0:ACAGTG Contig4674 8209 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20915:43365_1:N:0:ACAGTG Contig448500 922 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5300:46259_1:N:0:ACAGTG Contig611330 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10901:47624_1:N:0:ACAGTG Contig67445 2488 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11330:48477_1:N:0:ACAGTG Contig24949 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5436:48503_1:N:0:ACAGTG Contig645616 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19687:50940_1:N:0:ACAGTG Contig663015 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9351:51950_1:N:0:ACAGTG Contig619642 178 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2690:52328_1:N:0:ACAGTG Contig155408 1046 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8285:52706_1:N:0:ACAGTG Contig670362 265 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16280:53390_1:N:0:ACAGTG Contig290221 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11843:53750_1:N:0:ACAGTG Contig63861 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4740:55179_1:N:0:ACAGTG Contig548258 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19399:55203_1:N:0:ACAGTG Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12528:55339_1:N:0:ACAGTG Contig642394 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8133:56550_1:N:0:ACAGTG Contig291404 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1978:56832_1:N:0:ACAGTG Contig423463 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5169:57515_1:N:0:ACAGTG Contig49104 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11121:58405_1:N:0:ACAGTG Contig339177 190 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14696:61682_1:N:0:ACAGTG Contig264801 340 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21278:61590_1:N:0:ACAGTG Contig61294 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11140:63126_1:N:0:ACAGTG Contig94852 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18852:63214_1:N:0:ACAGTG Contig28927 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21121:64247_1:N:0:ACAGTG Contig552446 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7009:64497_1:N:0:ACAGTG Contig116662 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14233:65974_1:N:0:ACAGTG Contig671978 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18066:66907_1:N:0:ACAGTG Contig14919 181 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1160:67392_1:N:0:ACAGTG Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9797:68045_1:N:0:ACAGTG Contig223032 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11201:69935_1:N:0:ACAGTG Contig91312 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14412:70535_1:N:0:ACAGTG Contig201439 766 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15915:74232_1:N:0:ACAGTG Contig185593 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8983:77895_1:N:0:ACAGTG Contig66282 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20173:79254_1:N:0:ACAGTG Contig73937 5659 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17435:79742_1:N:0:ACAGTG Contig108957 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19781:84398_1:N:0:ACAGTG Contig347662 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10033:85640_1:N:0:ACAGTG Contig158923 918 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1913:85885_1:N:0:ACAGTG Contig38659 8315 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15304:86120_1:N:0:ACAGTG Contig106048 4246 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13006:89058_1:N:0:ACAGTG Contig319776 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7238:90401_1:N:0:ACAGTG Contig192752 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1456:91076_1:N:0:ACAGTG Contig16398 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19633:96131_1:N:0:ACAGTG Contig184175 3925 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20046:96155_1:N:0:ACAGTG Contig153201 529 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4109:96668_1:N:0:ACAGTG Contig269795 110 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4946:98920_1:N:0:ACAGTG Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19026:100020_1:N:0:ACAGTG Contig543817 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7586:100593_1:N:0:ACAGTG Contig122784 1229 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9219:4173_1:N:0:ACAGTG Contig267721 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2647:4443_1:N:0:ACAGTG Contig44560 1954 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2160:4570_1:N:0:ACAGTG Contig294033 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16510:5039_1:N:0:ACAGTG Contig573760 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3258:5253_1:N:0:ACAGTG Contig211439 1101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10922:6002_1:N:0:ACAGTG Contig262166 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14669:6309_1:N:0:ACAGTG Contig489194 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11042:7617_1:N:0:ACAGTG Contig466298 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19939:8930_1:N:0:ACAGTG Contig6715 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5105:9394_1:N:0:ACAGTG Contig684277 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7272:9932_1:N:0:ACAGTG Contig75198 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19962:10449_1:N:0:ACAGTG Contig283439 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10362:10540_1:N:0:ACAGTG Contig167902 482 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18448:10540_1:N:0:ACAGTG Contig294150 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4807:11391_1:N:0:ACAGTG Contig486803 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8724:11981_1:N:0:ACAGTG Contig4083 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18124:11838_1:N:0:ACAGTG Contig298422 111 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7391:12483_1:N:0:ACAGTG Contig522536 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7405:12536_1:N:0:ACAGTG Contig53023 9203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15851:12679_1:N:0:ACAGTG Contig175238 982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16765:13632_1:N:0:ACAGTG Contig325954 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5843:17577_1:N:0:ACAGTG Contig126341 3070 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10006:18446_1:N:0:ACAGTG Contig593262 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16310:19629_1:N:0:ACAGTG Contig265091 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19839:20737_1:N:0:ACAGTG Contig112066 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3853:21344_1:N:0:ACAGTG Contig487282 884 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14315:21384_1:N:0:ACAGTG Contig5974 8404 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16442:22175_1:N:0:ACAGTG Contig276867 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4723:22724_1:N:0:ACAGTG Contig16985 787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21085:24517_1:N:0:ACAGTG Contig42527 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8562:24952_1:N:0:ACAGTG Contig5272 6918 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19059:25493_1:N:0:ACAGTG Contig223140 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16712:26796_1:N:0:ACAGTG Contig207456 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12331:27792_1:N:0:ACAGTG Contig329075 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18701:28288_1:N:0:ACAGTG Contig392239 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19218:29191_1:N:0:ACAGTG Contig88172 2576 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15432:29544_1:N:0:ACAGTG Contig495698 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17755:29914_1:N:0:ACAGTG Contig90884 1837 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4634:30334_1:N:0:ACAGTG Contig222325 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10487:31187_1:N:0:ACAGTG Contig426320 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7140:32706_1:N:0:ACAGTG Contig159433 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8170:33845_1:N:0:ACAGTG Contig108957 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2612:34369_1:N:0:ACAGTG Contig511900 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10063:34388_1:N:0:ACAGTG Contig337886 143 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3933:35750_1:N:0:ACAGTG Contig482742 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13321:37914_1:N:0:ACAGTG Contig608213 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16286:38818_1:N:0:ACAGTG Contig16386 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3107:40093_1:N:0:ACAGTG Contig310269 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10646:41505_1:N:0:ACAGTG Contig653177 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20669:45826_1:N:0:ACAGTG Contig495698 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20819:46332_1:N:0:ACAGTG Contig686815 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8516:47122_1:N:0:ACAGTG Contig340977 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7988:48451_1:N:0:ACAGTG Contig170027 3657 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9988:50159_1:N:0:ACAGTG Contig98493 1906 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17632:50404_1:N:0:ACAGTG Contig599138 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16074:51162_1:N:0:ACAGTG Contig556127 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19792:54192_1:N:0:ACAGTG Contig601798 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18969:56946_1:N:0:ACAGTG Contig529227 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9349:57735_1:N:0:ACAGTG Contig284109 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18058:58280_1:N:0:ACAGTG Contig527223 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19311:58304_1:N:0:ACAGTG Contig338324 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16911:58986_1:N:0:ACAGTG Contig380513 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10229:60055_1:N:0:ACAGTG Contig159433 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17476:60731_1:N:0:ACAGTG Contig657457 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8492:61172_1:N:0:ACAGTG Contig295859 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14826:61546_1:N:0:ACAGTG Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8990:63891_1:N:0:ACAGTG Contig280609 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9429:63886_1:N:0:ACAGTG Contig484042 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16534:64174_1:N:0:ACAGTG Contig119413 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11015:64976_1:N:0:ACAGTG Contig35027 12093 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6304:67677_1:N:0:ACAGTG Contig131711 9666 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12031:68094_1:N:0:ACAGTG Contig161050 4175 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2982:68537_1:N:0:ACAGTG Contig291993 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4727:69195_1:N:0:ACAGTG Contig396683 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10764:69936_1:N:0:ACAGTG Contig329726 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16661:69994_1:N:0:ACAGTG Contig78841 22443 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6522:73337_1:N:0:ACAGTG Contig178183 956 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11099:73298_1:N:0:ACAGTG Contig626636 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2143:74733_1:N:0:ACAGTG Contig466507 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2432:74510_1:N:0:ACAGTG Contig244309 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18534:75697_1:N:0:ACAGTG Contig159669 9809 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13330:76558_1:N:0:ACAGTG Contig434959 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5201:78037_1:N:0:ACAGTG Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14603:78989_1:N:0:ACAGTG Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1521:79054_1:N:0:ACAGTG Contig672436 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4797:80136_1:N:0:ACAGTG Contig183189 607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9957:80497_1:N:0:ACAGTG Contig1629 21917 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12919:80705_1:N:0:ACAGTG Contig137580 1063 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5174:82465_1:N:0:ACAGTG Contig174804 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5966:83360_1:N:0:ACAGTG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9817:83946_1:N:0:ACAGTG Contig50844 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8353:84187_1:N:0:ACAGTG Contig113214 3363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8344:84287_1:N:0:ACAGTG Contig564182 121 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1303:86609_1:N:0:ACAGTG Contig98073 6377 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7182:88514_1:N:0:ACAGTG Contig522586 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19769:88845_1:N:0:ACAGTG Contig182171 1318 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18864:89293_1:N:0:ACAGTG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10074:93340_1:N:0:ACAGTG Contig34156 5800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8741:97461_1:N:0:ACAGTG Contig565153 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16017:98352_1:N:0:ACAGTG Contig19580 5388 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20746:99204_1:N:0:ACAGTG Contig298552 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10178:4291_1:N:0:ACAGTG Contig49514 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21125:4455_1:N:0:ACAGTG Contig351254 193 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13352:4613_1:N:0:ACAGTG Contig134290 1092 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6461:4841_1:N:0:ACAGTG Contig62730 10859 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7795:5921_1:N:0:ACAGTG Contig268099 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1622:6881_1:N:0:ACAGTG Contig4313 6790 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8598:8949_1:N:0:ACAGTG Contig51851 912 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18152:9362_1:N:0:ACAGTG Contig542057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20464:9328_1:N:0:ACAGTG Contig5974 8403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19309:11168_1:N:0:ACAGTG Contig556672 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8223:11678_1:N:0:ACAGTG Contig196323 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6033:14514_1:N:0:ACAGTG Contig19580 5388 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11698:15578_1:N:0:ACAGTG Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18382:17726_1:N:0:ACAGTG Contig187363 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19910:19251_1:N:0:ACAGTG Contig568374 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11936:19766_1:N:0:ACAGTG Contig234837 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11902:19774_1:N:0:ACAGTG Contig234837 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9399:21296_1:N:0:ACAGTG Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6202:21714_1:N:0:ACAGTG Contig612958 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12174:22053_1:N:0:ACAGTG Contig142725 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9854:23866_1:N:0:ACAGTG Contig594240 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11752:23980_1:N:0:ACAGTG Contig184175 3925 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3354:26691_1:N:0:ACAGTG Contig123341 1383 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8036:28494_1:N:0:ACAGTG Contig527237 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5436:29532_1:N:0:ACAGTG Contig382152 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7299:29680_1:N:0:ACAGTG Contig665817 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12213:30383_1:N:0:ACAGTG Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6878:33169_1:N:0:ACAGTG Contig158155 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4755:34672_1:N:0:ACAGTG Contig486377 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8473:36021_1:N:0:ACAGTG Contig71694 3766 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4900:36416_1:N:0:ACAGTG Contig70067 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11776:36994_1:N:0:ACAGTG Contig46850 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13239:36965_1:N:0:ACAGTG Contig219580 567 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18907:39240_1:N:0:ACAGTG Contig644198 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14376:39668_1:N:0:ACAGTG Contig655615 389 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16817:40299_1:N:0:ACAGTG Contig681504 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3116:41561_1:N:0:ACAGTG Contig594240 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17165:42242_1:N:0:ACAGTG Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17065:43465_1:N:0:ACAGTG Contig279010 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9507:43659_1:N:0:ACAGTG Contig376215 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18210:44903_1:N:0:ACAGTG Contig618920 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9210:45515_1:N:0:ACAGTG Contig683399 117 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15686:49576_1:N:0:ACAGTG Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2548:55477_1:N:0:ACAGTG Contig322052 401 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7323:55832_1:N:0:ACAGTG Contig23033 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2742:56205_1:N:0:ACAGTG Contig348223 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12038:57148_1:N:0:ACAGTG Contig556038 407 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12515:57147_1:N:0:ACAGTG Contig109317 9266 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11124:58843_1:N:0:ACAGTG Contig433396 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20902:59629_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1820:59922_1:N:0:ACAGTG Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4753:63996_1:N:0:ACAGTG Contig165074 800 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12197:65126_1:N:0:ACAGTG Contig376108 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16014:68587_1:N:0:ACAGTG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20922:69088_1:N:0:ACAGTG Contig173903 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7734:69301_1:N:0:ACAGTG Contig409738 232 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16186:70085_1:N:0:ACAGTG Contig185073 452 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19192:71153_1:N:0:ACAGTG Contig590156 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17465:74058_1:N:0:ACAGTG Contig93734 7001 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14236:75152_1:N:0:ACAGTG Contig387018 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11481:75744_1:N:0:ACAGTG Contig323383 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12983:77098_1:N:0:ACAGTG Contig617116 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17306:77870_1:N:0:ACAGTG Contig13364 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17330:79761_1:N:0:ACAGTG Contig454130 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3899:82645_1:N:0:ACAGTG Contig48050 6833 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15455:83747_1:N:0:ACAGTG Contig117986 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7891:84796_1:N:0:ACAGTG Contig233419 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3107:85884_1:N:0:ACAGTG Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18537:87056_1:N:0:ACAGTG Contig569826 346 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18310:87414_1:N:0:ACAGTG Contig537730 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6681:87993_1:N:0:ACAGTG Contig403306 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19331:88615_1:N:0:ACAGTG Contig467114 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5962:89038_1:N:0:ACAGTG Contig88172 2576 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4251:90212_1:N:0:ACAGTG Contig580345 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19580:90951_1:N:0:ACAGTG Contig642394 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9293:93109_1:N:0:ACAGTG Contig176342 650 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14315:98664_1:N:0:ACAGTG Contig20903 5446 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12776:99778_1:N:0:ACAGTG Contig371039 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14304:2929_1:N:0:ACAGTG Contig651442 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21189:2938_1:N:0:ACAGTG Contig406433 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6140:3479_1:N:0:ACAGTG Contig549480 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17317:4165_1:N:0:ACAGTG Contig47177 1297 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4916:6849_1:N:0:ACAGTG Contig598079 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14507:7387_1:N:0:ACAGTG Contig302039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2335:7571_1:N:0:ACAGTG Contig274843 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8200:8459_1:N:0:ACAGTG Contig669684 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18041:8472_1:N:0:ACAGTG Contig677993 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16698:11139_1:N:0:ACAGTG Contig690156 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2439:11878_1:N:0:ACAGTG Contig115891 3687 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9168:12993_1:N:0:ACAGTG Contig427892 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14110:15695_1:N:0:ACAGTG Contig679613 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14775:18210_1:N:0:ACAGTG Contig197017 510 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20959:18888_1:N:0:ACAGTG Contig494022 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2318:19237_1:N:0:ACAGTG Contig538598 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8060:19648_1:N:0:ACAGTG Contig478443 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2197:20927_1:N:0:ACAGTG Contig561380 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16626:21351_1:N:0:ACAGTG Contig347117 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3297:21905_1:N:0:ACAGTG Contig147186 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1748:22819_1:N:0:ACAGTG Contig88172 2576 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3540:23205_1:N:0:ACAGTG Contig49983 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11277:24464_1:N:0:ACAGTG Contig586519 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8876:24734_1:N:0:ACAGTG Contig588166 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4347:26297_1:N:0:ACAGTG Contig314217 139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17220:28050_1:N:0:ACAGTG Contig414714 382 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1304:28827_1:N:0:ACAGTG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3926:31919_1:N:0:ACAGTG Contig341468 145 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16145:33633_1:N:0:ACAGTG Contig23910 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5225:34217_1:N:0:AAAGTG Contig138148 822 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5877:34658_1:N:0:ACAGTG Contig328874 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7578:34573_1:N:0:ACAGTG Contig182 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16877:37611_1:N:0:ACAGTG Contig478193 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3991:37983_1:N:0:ACAGTG Contig1548 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16170:37804_1:N:0:ACAGTG Contig503712 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5845:39758_1:N:0:ACAGTG Contig311656 513 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15357:41365_1:N:0:ACAGTG Contig367943 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21029:41863_1:N:0:ACAGTG Contig109778 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5393:42034_1:N:0:ACAGTG Contig471648 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3638:42937_1:N:0:ACAGTG Contig358603 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4624:42757_1:N:0:ACAGTG Contig141455 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5249:44345_1:N:0:ACAGTG Contig58315 6379 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8027:44641_1:N:0:ACAGTG Contig455433 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16264:44830_1:N:0:ACAGTG Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12820:47122_1:N:0:ACAGTG Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9175:47793_1:N:0:ACAGTG Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1960:48366_1:N:0:ACAGTG Contig115924 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14211:48877_1:N:0:ACAGTG Contig428356 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18402:49049_1:N:0:ACAATG Contig102792 2499 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19096:51921_1:N:0:ACAGTG Contig240294 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15851:52935_1:N:0:ACAGTG Contig544405 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10947:53356_1:N:0:ACAGTG Contig51546 9167 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8310:54280_1:N:0:ACAGTG Contig218200 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20584:56741_1:N:0:ACAGTG Contig249933 1865 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8904:57118_1:N:0:ACAGTG Contig382081 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12354:57730_1:N:0:ACAGTG Contig81763 11347 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3630:58421_1:N:0:ACAGTG Contig257286 825 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5543:60028_1:N:0:ACAGTG Contig53023 9204 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5190:60562_1:N:0:ACAGTG Contig345337 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10599:62097_1:N:0:ACAGTG Contig344147 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14070:63514_1:N:0:ACAGTG Contig471059 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11145:66305_1:N:0:ACAGTA Contig193747 509 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20005:67372_1:N:0:ACAGTG Contig76353 1874 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14471:67675_1:N:0:ACAGTG Contig453826 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19267:69982_1:N:0:ACAGTG Contig611868 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4217:71597_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20485:72043_1:N:0:ACAGTG Contig219247 282 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4436:72411_1:N:0:ACAGTG Contig542485 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1221:74184_1:N:0:ACAGTG Contig635343 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1241:74219_1:N:0:ACAGTG Contig635343 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5593:75467_1:N:0:ACAGTG Contig353994 190 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3916:75860_1:N:0:ACAGTG Contig443794 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5349:76490_1:N:0:ACAGTG Contig196489 403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12808:77013_1:N:0:ACAGTG Contig432576 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9978:77704_1:N:0:ACAGTG Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8632:79074_1:N:0:ACAGTG Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18433:80828_1:N:0:ACAGTG Contig140513 697 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1581:87501_1:N:0:ACAGTG Contig366895 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10371:88892_1:N:0:ACAGTG Contig465555 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14330:91636_1:N:0:ACAGTG Contig221640 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4402:92141_1:N:0:ACAGTG Contig175963 356 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13558:92458_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9293:94707_1:N:0:ACAGTG Contig71208 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6741:95727_1:N:0:ACAGTG Contig53023 9204 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3836:96022_1:N:0:ACAGTG Contig289669 367 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14395:96579_1:N:0:ACAGTG Contig588509 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19387:97913_1:N:0:ACAGTG Contig64446 6862 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10941:99078_1:N:0:ACAGTG Contig545918 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16087:100291_1:N:0:ACAGTG Contig166447 712 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6213:100724_1:N:0:ACAGTG Contig532333 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15676:100921_1:N:0:ACAGTG Contig60469 11178 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19508:2806_1:N:0:ACAGTG Contig250216 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3099:3677_1:N:0:ACAGTG Contig485388 136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21193:3990_1:N:0:ACAGTG Contig166001 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9688:4433_1:N:0:ACAGTG Contig367873 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3699:4739_1:N:0:ACAGTG Contig543400 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21298:5305_1:N:0:ACAGTG Contig459832 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5192:5544_1:N:0:ACAGTG Contig70354 10279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16340:5514_1:N:0:ACAGTG Contig165520 473 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13258:5996_1:N:0:ACAGTG Contig690108 338 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5336:6124_1:N:0:ACAGTG Contig126350 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18425:6280_1:N:0:ACAGTG Contig668319 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15887:6922_1:N:0:ACAGTG Contig549621 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11818:7050_1:N:0:ACAGTG Contig203124 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18747:11183_1:N:0:ACAGTG Contig162513 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2589:12712_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4964:12648_1:N:0:ACAGTG Contig606655 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14921:13264_1:N:0:ACAGTG Contig515424 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20910:14543_1:N:0:ACAGTG Contig561885 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5050:15205_1:N:0:ACAGTG Contig18716 78247 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12208:17069_1:N:0:ACAGTG Contig551859 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14111:17464_1:N:0:ACAGTG Contig386684 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6437:17809_1:N:0:ACAGTG Contig349370 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6183:19449_1:N:0:ACAGTG Contig251773 885 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17473:19997_1:N:0:ACAGTG Contig575500 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16231:20130_1:N:0:ACAGTG Contig256455 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18942:21619_1:N:0:ACAGTG Contig406027 175 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7881:22126_1:N:0:ACAGTG Contig319334 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21201:22224_1:N:0:ACAGTG Contig641727 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10336:24080_1:N:0:ACAGTG Contig372830 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15375:26386_1:N:0:ACAGTG Contig325954 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10889:28116_1:N:0:ACAGTG Contig635923 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4679:28422_1:N:0:ACAGTG Contig288007 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11151:28980_1:N:0:ACAGTG Contig473028 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11169:29489_1:N:0:ACAGTG Contig446085 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5408:29811_1:N:0:ACAGTG Contig393986 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13830:32009_1:N:0:ACAGTG Contig415938 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18713:34076_1:N:0:ACAGTG Contig73895 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4506:34648_1:N:0:ACAGTG Contig76044 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7660:35640_1:N:0:ACAGTG Contig348835 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3133:37439_1:N:0:ACAGTG Contig586632 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3409:37632_1:N:0:ACAGTG Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2839:38101_1:N:0:ACAGTG Contig49016 3486 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13780:40758_1:N:0:ACAGTG Contig595528 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11001:41239_1:N:0:ACAGTG Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8983:41999_1:N:0:ACAGTG Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13449:41991_1:N:0:ACAGTG Contig22900 28601 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20073:43262_1:N:0:ACAGTG Contig192366 419 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10750:45411_1:N:0:ACAGTG Contig523287 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3178:46126_1:N:0:ACAGTG Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16973:48016_1:N:0:ACAGTG Contig159488 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2206:48919_1:N:0:ACAGTG Contig209307 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9650:49102_1:N:0:ACAGTG Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19337:50474_1:N:0:ACAGTG Contig510614 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12600:51178_1:N:0:ACAGTG Contig690069 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4056:52190_1:N:0:ACAGTG Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6599:53036_1:N:0:ACAGTG Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14605:54036_1:N:0:ACAGTG Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21216:56723_1:N:0:ACAGTG Contig280178 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12100:57710_1:N:0:ACAGTG Contig378309 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5631:58003_1:N:0:ACAGTG Contig551183 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10367:59495_1:N:0:ACAGTG Contig298626 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16686:60920_1:N:0:ACAGTG Contig140757 10895 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2647:62169_1:N:0:ACAGTG Contig595185 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17724:62353_1:N:0:ACAGTG Contig521979 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19489:63315_1:N:0:ACAGTG Contig586278 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2769:63853_1:N:0:ACAGTG Contig453954 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8204:65285_1:N:0:ACAGTG Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2153:67624_1:N:0:ACAGTG Contig215748 1221 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2079:69078_1:N:0:ACAGTG Contig151825 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10817:71657_1:N:0:ACAGTG Contig53023 9203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7180:72379_1:N:0:ACAGTG Contig400624 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21094:72428_1:N:0:ACAGTG Contig316655 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11209:77282_1:N:0:ACAGTG Contig371017 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10602:79796_1:N:0:ACAGTG Contig608092 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1425:80494_1:N:0:ACAGTG Contig98714 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12179:81226_1:N:0:ACAGTG Contig684066 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11871:83396_1:N:0:ACAGTG Contig544135 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18359:84971_1:N:0:ACAGTG Contig279849 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19771:85687_1:N:0:ACAGTG Contig298868 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8915:86506_1:N:0:ACAGTG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8742:87357_1:N:0:ACAGTG Contig457780 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1163:89053_1:N:0:ACAGTG Contig395361 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11113:90951_1:N:0:ACAGTG Contig480786 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11937:91378_1:N:0:ACAGTG Contig230349 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12233:94401_1:N:0:ACAGTG Contig161662 423 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16998:94718_1:N:0:ACAGTG Contig81329 4632 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14173:95425_1:N:0:ACAGTG Contig175746 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15039:96151_1:N:0:ACAGTG Contig42377 14873 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3940:96272_1:N:0:ACAGTG Contig20217 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2684:96523_1:N:0:ACAGTG Contig282502 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13905:96866_1:N:0:ACAGTG Contig107308 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21141:97139_1:N:0:ACAGTG Contig371399 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6488:98371_1:N:0:ACAGTG Contig217423 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1984:98585_1:N:0:ACAGTG Contig1973 41588 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16773:98845_1:N:0:ACAGTG Contig212938 1394 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18098:100411_1:N:0:ACAGTG Contig153607 442 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19681:100966_1:N:0:ACAGTG Contig400639 162 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4328:2151_1:N:0:ACAGTG Contig3459 21352 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12569:5090_1:N:0:ACAGTG Contig561977 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7677:5678_1:N:0:ACAGTG Contig393059 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15945:5679_1:N:0:ACAGTG Contig632656 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9011:6467_1:N:0:ACAGTG Contig135094 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2655:6775_1:N:0:ACAGTG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19221:7076_1:N:0:ACAGTG Contig337464 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10478:7998_1:N:0:ACAGTG Contig45852 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12713:8095_1:N:0:ACAGTG Contig310027 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9687:8678_1:N:0:ACAGTG Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1655:9051_1:N:0:ACAGTG Contig436634 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4185:9175_1:N:0:ACAGTG Contig223347 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11821:11978_1:N:0:ACAGTG Contig287273 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6499:14006_1:N:0:ACAGTG Contig641306 816 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6396:14918_1:N:0:ACAGTG Contig25331 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1983:15278_1:N:0:ACAGTG Contig406952 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9712:15318_1:N:0:ACAGTG Contig12936 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19279:15254_1:N:0:ACAGTG Contig25479 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18446:16143_1:N:0:ACAGTG Contig444232 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5132:16632_1:N:0:ACAGTG Contig283410 159 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16822:16630_1:N:0:ACAGTG Contig124461 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12665:16849_1:N:0:ACAGTG Contig579637 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11626:17081_1:N:0:ACAGTG Contig99467 1091 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18176:18220_1:N:0:ACAGTG Contig79658 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10935:19678_1:N:0:ACAGTG Contig83131 3661 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2694:20573_1:N:0:ACAGTG Contig399451 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10878:22149_1:N:0:ACAGTG Contig651649 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6251:22286_1:N:0:ACAGTG Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17694:22474_1:N:0:ACAGTG Contig16953 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7459:22819_1:N:0:ACAGTG Contig291813 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10078:23708_1:N:0:ACAGTG Contig9548 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4014:25275_1:N:0:ACAGTG Contig300375 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4044:27937_1:N:0:ACAGTG Contig461268 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11521:28739_1:N:0:ACAGTG Contig12035 1251 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10970:29428_1:N:0:ACAGTG Contig120722 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11643:29271_1:N:0:ACAGTG Contig315609 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12008:29368_1:N:0:ACAGTG Contig249318 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18631:32940_1:N:0:ACAGTG Contig22227 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11025:34139_1:N:0:ACAGTG Contig502949 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18344:35307_1:N:0:ACAGTG Contig281732 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17372:36262_1:N:0:ACAGTG Contig242465 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10121:36813_1:N:0:ACAGTG Contig290670 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8743:37339_1:N:0:ACAGTG Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2803:38111_1:N:0:ACAGTG Contig131711 9666 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21264:38506_1:N:0:ACAGTG Contig644884 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10873:39793_1:N:0:ACAGTG Contig463718 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4459:40461_1:N:0:ACAGTG Contig294519 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4271:42584_1:N:0:ACAGTG Contig580099 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10934:44516_1:N:0:ACAGTG Contig360983 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14269:45751_1:N:0:ACAGTG Contig129461 2285 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10413:46773_1:N:0:ACAGTG Contig31374 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12895:46882_1:N:0:ACAGTG Contig432995 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19373:47757_1:N:0:ACAGTG Contig233723 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1294:49177_1:N:0:ACAGTG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5667:49629_1:N:0:ACAGTG Contig9137 6895 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11327:49561_1:N:0:ACAGTG Contig691812 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6392:50406_1:N:0:ACAGTG Contig162322 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5258:52721_1:N:0:ACAGTG Contig140932 1056 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19048:56362_1:N:0:ACAGTG Contig209981 755 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9350:56777_1:N:0:ACAGTG Contig427991 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13930:56778_1:N:0:ACAGTG Contig423087 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12224:58185_1:N:0:ACAGTG Contig195358 234 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4505:58765_1:N:0:ACAGTG Contig582114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3335:61030_1:N:0:ACAGTG Contig108298 1716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20527:62120_1:N:0:ACAGTG Contig582147 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16033:62430_1:N:0:ACAGTG Contig367943 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20705:63907_1:N:0:ACAGTG Contig461511 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20102:65785_1:N:0:ACAGTG Contig491128 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11503:67030_1:N:0:ACAGTG Contig105102 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2690:67338_1:N:0:ACAGTG Contig144151 1064 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13612:67981_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12029:69388_1:N:0:ACAGTG Contig288479 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13905:69435_1:N:0:ACAGTG Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19077:69885_1:N:0:ACAGTG Contig325954 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19824:71462_1:N:0:ACAGTG Contig319506 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5887:74257_1:N:0:ACAGTG Contig501049 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5551:74739_1:N:0:ACAGTG Contig552872 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8509:74846_1:N:0:ACAGTG Contig121994 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4507:75386_1:N:0:ACAGTG Contig71779 14342 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17086:76273_1:N:0:ACAGTG Contig593455 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1313:76661_1:N:0:ACAGTG Contig266657 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6773:77339_1:N:0:ACAGTG Contig422267 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10821:77579_1:N:0:ACAGTG Contig27322 3522 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5260:77775_1:N:0:ACAGTG Contig231395 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10389:78222_1:N:0:ACAGTG Contig87238 4280 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12487:78820_1:N:0:ACAGTG Contig110295 2996 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15538:79224_1:N:0:ACAGTG Contig276758 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11906:79260_1:N:0:ACAGTG Contig315137 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17201:79314_1:N:0:ACAGTG Contig206982 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18243:79271_1:N:0:ACAGTG Contig91220 7579 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12467:79520_1:N:0:ACAGTG Contig476751 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16173:80213_1:N:0:ACAGTG Contig431712 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6327:82343_1:N:0:ACAGTG Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18946:84334_1:N:0:ACAGTG Contig491128 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16954:85681_1:N:0:ACAGTG Contig117977 180 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5812:87456_1:N:0:ACAGTG Contig114890 6374 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2622:87527_1:N:0:ACAGTG Contig184236 992 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4872:88412_1:N:0:ACAGTG Contig14829 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14213:88446_1:N:0:ACAGTG Contig459378 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16071:89266_1:N:0:ACAGTG Contig418566 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12774:90528_1:N:0:ACAGTG Contig231157 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16883:90524_1:N:0:ACAGTG Contig585519 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3567:93651_1:N:0:ACAGTG Contig131673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11690:95124_1:N:0:ACAGTG Contig345702 456 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10666:95378_1:N:0:ACAGTG Contig445599 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18372:96838_1:N:0:ACAGTG Contig105925 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16944:97317_1:N:0:ACAGTG Contig179813 400 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18527:97741_1:N:0:ACAGTG Contig148113 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16187:98943_1:N:0:ACAGTG Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8221:100277_1:N:0:ACAGTG Contig104327 1568 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19478:100611_1:N:0:ACAGTG Contig396694 212 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19914:2393_1:N:0:ACAGTG Contig260781 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3416:3313_1:N:0:ACAGTG Contig122701 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11963:3666_1:N:0:ACAGTG Contig124743 837 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3182:3862_1:N:0:ACAGTG Contig108964 1996 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3868:6376_1:N:0:ACAGTG Contig648674 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19666:6323_1:N:0:ACAGTG Contig595250 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5095:6825_1:N:0:ACAGTG Contig116630 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10172:11109_1:N:0:ACAGTG Contig604194 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6882:11353_1:N:0:ACAGTG Contig94539 7567 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1415:11707_1:N:0:ACAGTG Contig690329 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2935:11891_1:N:0:ACAGTG Contig192193 1196 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9796:12679_1:N:0:ACAGTG Contig360647 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20811:13067_1:N:0:ACAGTG Contig260781 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12280:13728_1:N:0:ACAGTG Contig145794 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6795:14151_1:N:0:ACAGTG Contig127290 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14355:14106_1:N:0:ACAGTG Contig522498 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11427:15203_1:N:0:ACAGTG Contig475610 317 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13604:15203_1:N:0:ACAGTG Contig537474 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15514:15147_1:N:0:ACAGTG Contig122434 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17906:15493_1:N:0:ACAGTG Contig694001 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13260:15924_1:N:0:ACAGTG Contig105749 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1428:16979_1:N:0:ACAGTG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17618:18518_1:N:0:ACAGTG Contig523942 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5491:18847_1:N:0:ACAGTG Contig141756 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13977:20617_1:N:0:ACAGTG Contig646821 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2672:24560_1:N:0:ACAGTG Contig338914 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12441:25071_1:N:0:ACAGTG Contig67353 6077 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10340:25873_1:N:0:ACAGTG Contig233991 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3004:30195_1:N:0:ACAGTG Contig113399 883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6828:30083_1:N:0:ACAGTG Contig41295 7607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17359:30216_1:N:0:ACAGTG Contig419112 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7091:31304_1:N:0:ACAGTG Contig460771 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2183:31596_1:N:0:ACAGTG Contig556433 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4297:32968_1:N:0:ACAGTG Contig240021 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4926:35966_1:N:0:ACAGTG Contig304376 10130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8332:36718_1:N:0:ACAGTG Contig209630 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18711:37724_1:N:0:ACAGTG Contig61874 578 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9375:38291_1:N:0:ACAGTG Contig101987 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6125:39642_1:N:0:ACAGTG Contig116847 799 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15893:40719_1:N:0:ACAGTG Contig529050 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15886:40753_1:N:0:ACAGTG Contig529050 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16117:42503_1:N:0:ACAGTG Contig274362 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18491:42551_1:N:0:ACAGTG Contig521995 113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11233:45625_1:N:0:ACAGTG Contig102854 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15483:46150_1:N:0:ACAGTG Contig573158 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9889:46662_1:N:0:ACAGTG Contig171920 2190 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19478:47157_1:N:0:ACAGTG Contig237929 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15104:48286_1:N:0:ACAGTG Contig355037 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13446:48699_1:N:0:ACAGTG Contig468213 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16493:48883_1:N:0:ACAGTG Contig12698 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17593:49233_1:N:0:ACAGTG Contig424883 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21215:49246_1:N:0:ACAGTG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16310:52813_1:N:0:ACAGTG Contig684436 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5532:53755_1:N:0:ACAGTG Contig50451 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8085:53903_1:N:0:ACAGTG Contig397456 107 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17140:54901_1:N:0:ACAGTG Contig24048 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4255:56730_1:N:0:ACAGTG Contig139048 1034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7369:57795_1:N:0:ACAGTG Contig518561 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14635:59226_1:N:0:ACAGTG Contig57995 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2380:59321_1:N:0:ACAGTG Contig139048 1034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9472:59285_1:N:0:ACAGTG Contig110194 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19735:60138_1:N:0:ACAGTG Contig651740 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7310:61830_1:N:0:ACAGTG Contig427164 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10847:62347_1:N:0:ACAGTG Contig247367 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14343:62353_1:N:0:ACAGTG Contig169966 658 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2560:63703_1:N:0:ACAGAG Contig406217 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20964:64888_1:N:0:ACAGTG Contig88233 3192 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18085:67983_1:N:0:ACAGTG Contig683764 5910 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3589:68114_1:N:0:ACAGTG Contig55033 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2810:68443_1:N:0:ACAGTG Contig627130 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1301:68528_1:N:0:ACAGTG Contig90454 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1094:69143_1:N:0:ACAGTG Contig504198 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16538:69189_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6334:69423_1:N:0:ACAGTG Contig298153 304 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5041:70336_1:N:0:ACAGTG Contig454829 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3099:71878_1:N:0:ACAGTG Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10958:72619_1:N:0:ACAGTG Contig239022 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14318:73030_1:N:0:ACAGTG Contig93734 7001 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11639:73849_1:N:0:ACAGTG Contig50057 6043 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16700:74201_1:N:0:ACAGTG Contig673557 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16007:74734_1:N:0:ACAGTG Contig446050 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19483:75408_1:N:0:ACAGTG Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20241:75804_1:N:0:ACAGTG Contig51318 26183 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8844:76585_1:N:0:ACAGTG Contig157537 889 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3685:77354_1:N:0:ACAGTG Contig118590 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4552:78212_1:N:0:ACAGTG Contig69145 14807 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5453:78090_1:N:0:ACAGTG Contig1816 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14313:78577_1:N:0:ACAGTG Contig139048 1034 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3205:80037_1:N:0:ACAGTG Contig405941 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6330:80651_1:N:0:ACAGTG Contig428079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14619:81069_1:N:0:ACAGTG Contig60519 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16576:81012_1:N:0:ACAGTG Contig18116 4012 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11627:81598_1:N:0:ACAGTG Contig205405 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15703:81952_1:N:0:ACAGTG Contig4326 6284 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13073:82288_1:N:0:ACAGTG Contig563516 111 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13569:82855_1:N:0:ACAGTG Contig78612 16838 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2562:84287_1:N:0:ACAGTG Contig262006 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10129:84281_1:N:0:ACAGTG Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6382:84592_1:N:0:ACAGTG Contig427679 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20268:84533_1:N:0:ACAGTG Contig572557 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19796:87790_1:N:0:ACAGTG Contig190979 801 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20914:90582_1:N:0:ACAGTG Contig350276 626 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12319:91344_1:N:0:ACAGTG Contig420605 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4580:91996_1:N:0:ACAGTG Contig601998 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8482:93959_1:N:0:ACAGTG Contig344283 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15444:93963_1:N:0:ACAGTG Contig113406 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11048:97238_1:N:0:ACAGTG Contig465253 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1672:98394_1:N:0:ACAGTG Contig628211 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2700:98880_1:N:0:ACAGTG Contig671433 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4008:98946_1:N:0:ACAGTG Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3705:99545_1:N:0:ACAGTG Contig383761 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4839:100656_1:N:0:ACAGTG Contig430323 250 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5419:100986_1:N:0:ACAGTG Contig201157 697 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14858:4552_1:N:0:ACAGTG Contig120188 4502 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7710:6086_1:N:0:ACAGTG Contig145807 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21192:7129_1:N:0:ACAGTG Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15915:7274_1:N:0:ACAGTG Contig165878 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13158:8604_1:N:0:ACAGTG Contig449208 485 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20298:10229_1:N:0:ACAGTG Contig232240 110 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9193:10629_1:N:0:ACAGTG Contig331309 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1829:11445_1:N:0:ACAGTG Contig491424 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12807:11772_1:N:0:ACAGTG Contig8381 3154 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17678:14552_1:N:0:ACAGTG Contig642394 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3255:15912_1:N:0:ACAGTG Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12825:16236_1:N:0:ACAGTG Contig446361 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9817:16398_1:N:0:ACAGTG Contig258426 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4975:17348_1:N:0:GCAGTG Contig488428 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16809:17459_1:N:0:ACAGTG Contig437255 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11419:18751_1:N:0:ACAGTG Contig86218 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13127:19237_1:N:0:ACAGTG Contig72112 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10598:20072_1:N:0:ACAGTG Contig268454 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3708:21042_1:N:0:ACAGTG Contig181207 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9538:21205_1:N:0:ACAGTG Contig57861 4311 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10930:21829_1:N:0:ACAGTG Contig362824 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18452:22062_1:N:0:ACAGTG Contig605207 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11475:22399_1:N:0:ACAGTG Contig119512 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11486:22429_1:N:0:ACAGTG Contig388700 277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13106:22317_1:N:0:ACAGTG Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14275:23278_1:N:0:ACAGTG Contig279888 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10943:23512_1:N:0:ACAGTG Contig617915 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17020:23616_1:N:0:ACAGTG Contig685604 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5296:23919_1:N:0:ACAGTG Contig56710 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19475:23751_1:N:0:ACAGTG Contig73932 3875 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1829:24710_1:N:0:ACAGTG Contig590614 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6551:26166_1:N:0:ACAGTG Contig475113 465 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10912:26296_1:N:0:ACAGTG Contig432572 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18371:26428_1:N:0:ACAGTG Contig334342 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21224:26765_1:N:0:ACAGTG Contig230947 1279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5231:27615_1:N:0:ACAGTG Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10995:28744_1:N:0:ACAGTG Contig628534 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5371:29091_1:N:0:ACAGTG Contig687836 688 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13406:29907_1:N:0:ACAGTG Contig256309 129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15228:30081_1:N:0:ACAGTG Contig671253 152 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20371:30902_1:N:0:ACAGTG Contig177637 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20973:32359_1:N:0:ACAGTG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20752:32579_1:N:0:ACAGTG Contig16985 787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3640:32890_1:N:0:ACAGTG Contig11158 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19432:32907_1:N:0:ACAGTG Contig320509 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4296:33209_1:N:0:ACAGTG Contig201297 1139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19953:33654_1:N:0:ACAGTG Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3944:33897_1:N:0:ACAGTG Contig84290 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16939:35971_1:N:0:ACAGTG Contig606433 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20942:38786_1:N:0:ACAGTG Contig260522 156 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21001:40859_1:N:0:AAAGTG Contig623193 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12373:42844_1:N:0:ACAGTG Contig443321 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3804:43055_1:N:0:ACAGTG Contig605190 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14676:43859_1:N:0:ACAGTG Contig159644 277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4327:45091_1:N:0:ACAGTG Contig542746 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12782:45047_1:N:0:ACAGTG Contig306668 177 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19140:46385_1:N:0:ACAGTG Contig563774 283 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19807:46921_1:N:0:ACAGTG Contig76256 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1096:48268_1:N:0:ACAGTG Contig422425 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7424:49914_1:N:0:ACAGTG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6153:51509_1:N:0:ACAGTG Contig188086 480 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12967:51629_1:N:0:ACAGTG Contig262006 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1858:52149_1:N:0:ACAGTG Contig111553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1228:52837_1:N:0:ACAGTG Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9011:52827_1:N:0:ACAGTG Contig625687 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12686:53596_1:N:0:ACAGTG Contig94407 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20625:53589_1:N:0:ACAGTG Contig548258 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3229:54357_1:N:0:ACAGTG Contig406336 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9089:59576_1:N:0:ACAGTG Contig516118 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12342:59612_1:N:0:ACAGTG Contig202265 1403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5145:59855_1:N:0:ACAGTG Contig465922 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15633:60628_1:N:0:ACAGAG Contig146402 1504 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12481:62478_1:N:0:ACAGTG Contig360647 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18352:62748_1:N:0:ACAGTG Contig292438 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18885:62847_1:N:0:ACAGTG Contig20608 4263 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17253:64797_1:N:0:ACAGTG Contig158704 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1126:66497_1:N:0:ACAGTG Contig395547 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12746:67154_1:N:0:ACAGTG Contig209919 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7580:68027_1:N:0:ACAGTG Contig206165 836 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2473:68794_1:N:0:ACAGTG Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13484:69551_1:N:0:ACAGTG Contig442920 2990 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17038:69881_1:N:0:ACAGTG Contig263581 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6997:73995_1:N:0:ACAGTG Contig67905 4362 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7166:74201_1:N:0:ACAGTG Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19639:75187_1:N:0:ACAGTG Contig552809 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7668:76348_1:N:0:ACAGTG Contig684280 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5484:76587_1:N:0:ACAGTG Contig212711 416 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8997:77316_1:N:0:ACAGTG Contig511646 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19958:78323_1:N:0:ACAGTG Contig351053 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12476:80127_1:N:0:ACAGTG Contig25120 1768 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8072:82607_1:N:0:ACAGTG Contig12869 112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20125:82524_1:N:0:ACAGTG Contig365760 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8382:84039_1:N:0:ACAGTG Contig583785 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19969:84104_1:N:0:ACAGTG Contig649471 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8270:84407_1:N:0:ACAGTG Contig548538 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5478:85408_1:N:0:ACAGTG Contig630038 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3024:86093_1:N:0:ACAGTG Contig221809 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9985:86472_1:N:0:ACAGTG Contig652400 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3648:86674_1:N:0:ACAGTG Contig179249 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10199:86673_1:N:0:ACAGTG Contig545950 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13768:86789_1:N:0:ACAGTG Contig174714 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1752:88719_1:N:0:ACAGTG Contig277106 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9815:89669_1:N:0:ACAGTG Contig290354 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10157:92824_1:N:0:ACAGTG Contig586278 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8486:93769_1:N:0:ACAGTG Contig9558 3890 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12967:96033_1:N:0:ACAGTG Contig609488 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1163:97530_1:N:0:ACAGTG Contig4164 13131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20521:97570_1:N:0:ACAGTG Contig297862 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3660:99295_1:N:0:ACAGTG Contig7695 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7748:100122_1:N:0:ACAGTG Contig24992 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16542:100042_1:N:0:ACAGTG Contig41295 7607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4702:2871_1:N:0:ACAGTG Contig662525 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4893:3294_1:N:0:ACAGTG Contig414714 382 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17549:5357_1:N:0:ACAGTG Contig565255 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1301:6907_1:N:0:ACAGTG Contig545436 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14793:8477_1:N:0:ACAGTG Contig435008 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18287:8555_1:N:0:ACAGTG Contig439156 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14760:10620_1:N:0:ACAGTG Contig265711 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7144:12972_1:N:0:ACAGTG Contig186017 425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7991:13309_1:N:0:ACAGTG Contig648802 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5288:13614_1:N:0:ACAGTG Contig620440 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15757:15374_1:N:0:ACAGTG Contig26049 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8309:16439_1:N:0:ACAGTG Contig549878 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14442:16609_1:N:0:ACAGTG Contig96780 3697 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17797:18708_1:N:0:ACAGTG Contig663988 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1991:19109_1:N:0:ACAGTG Contig96809 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15639:19012_1:N:0:ACAGTG Contig206873 1 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 789051 (78.91%) aligned 0 times 108684 (10.87%) aligned exactly 1 time 102265 (10.23%) aligned >1 times 21.09% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 789313 (78.93%) aligned 0 times 108330 (10.83%) aligned exactly 1 time 102357 (10.24%) aligned >1 times 21.07% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 366603 (36.66%) aligned 0 times 218752 (21.88%) aligned exactly 1 time 414645 (41.46%) aligned >1 times 63.34% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 367877 (36.79%) aligned 0 times 218752 (21.88%) aligned exactly 1 time 413371 (41.34%) aligned >1 times 63.21% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 5_ACAGTG_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 5_ACAGTG_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 399336 Mapping efficiency: 39.9% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2260603 Total methylated C's in CpG context: 86479 Total methylated C's in CHG context: 6442 Total methylated C's in CHH context: 121234 Total methylated C's in Unknown context: 33 Total unmethylated C's in CpG context: 224327 Total unmethylated C's in CHG context: 413986 Total unmethylated C's in CHH context: 1408135 Total unmethylated C's in Unknown context: 359 C methylated in CpG context: 27.8% C methylated in CHG context: 1.5% C methylated in CHH context: 7.9% C methylated in Unknown context (CN or CHN): 8.4% Bismark completed in 0d 1h 49m 10s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/6_GCCAAT_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 6_GCCAAT_L001_R1_001_trimmed.fq.gz to 6_GCCAAT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 6_GCCAAT_L001_R1_001_trimmed.fq.gz to 6_GCCAAT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 6_GCCAAT_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 6_GCCAAT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 6_GCCAAT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 6_GCCAAT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1108:2155_1:N:0:GCCAAT 0 Contig100605_CT_converted 1084 1 31M * 0 0 GGGTAGGTAGTGAAGGTTTGTGGTTGATAGG HGH@@GHCBFD@>FHJ?D@B9BDGHIGIIJI AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from 6_GCCAAT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1108:2155_1:N:0:GCCAAT 16 Contig17751_GA_converted 5893 1 31M * 0 0 CCTATCAACCACAAACCTTCACTACCTACCC IJIIGIHGDB9B@D?JHF>@DFBCHG@@HGH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from 6_GCCAAT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1108:2155_1:N:0:GCCAAT 4 * 0 0 * * 0 0 AAATAAATAATAAAAATTTATAATTAATAAA HGH@@GHCBFD@>FHJ?D@B9BDGHIGIIJI YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 6_GCCAAT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1108:2155_1:N:0:GCCAAT 4 * 0 0 * * 0 0 AAATAAATAATAAAAATTTATAATTAATAAA HGH@@GHCBFD@>FHJ?D@B9BDGHIGIIJI YT:Z:UU >>> Writing bisulfite mapping results to 6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/6_GCCAAT_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20910:3652_1:N:0:GCCAAT Contig321455 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7366:3829_1:N:0:GCCAAT Contig48760 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13575:10970_1:N:0:GCCAAT Contig325568 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16921:11616_1:N:0:GCCAAT Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1484:12264_1:N:0:GCCAAT Contig205529 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4007:13049_1:N:0:GCCAAT Contig404714 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4722:14401_1:N:0:GCCAAT Contig306001 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8536:15354_1:N:0:GCAAAT Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9067:16897_1:N:0:GCCAAT Contig594240 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8518:17666_1:N:0:GCCAAT Contig489838 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11115:18666_1:N:0:GCCAAT Contig104687 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9699:18983_1:N:0:GCCAAT Contig290221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5819:20826_1:N:0:GCCAAT Contig666972 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6545:23750_1:N:0:GCCAAT Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8368:23846_1:N:0:GCCAAT Contig560873 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4063:24155_1:N:0:GCCAAT Contig596614 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2615:27381_1:N:0:GCCAAT Contig471779 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15028:28322_1:N:0:GCCAAT Contig441943 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17130:30318_1:N:0:GCCAAT Contig153437 2313 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7575:30629_1:N:0:GCCAAT Contig348855 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6302:33316_1:N:0:GCCAAT Contig227618 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11892:34218_1:N:0:GCCAAT Contig117874 1299 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20824:35609_1:N:0:GCCAAA Contig292125 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17463:36387_1:N:0:GCCAAT Contig539076 170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20823:36519_1:N:0:GCCAAT Contig479819 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19531:38875_1:N:0:GCCAAT Contig16758 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10765:39135_1:N:0:GCCAAT Contig543695 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20884:39379_1:N:0:GCCAAT Contig421208 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12623:39596_1:N:0:GCCAAT Contig142831 855 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9324:44076_1:N:0:GCCAAT Contig513901 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2786:45903_1:N:0:GCCAAT Contig682588 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18636:47200_1:N:0:GCCAAT Contig297153 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11801:50081_1:N:0:GCCAAT Contig420186 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4924:50384_1:N:0:GCCAAT Contig655851 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1395:52083_1:N:0:GCCAAT Contig47632 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7116:52456_1:N:0:GGCAAT Contig406952 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14024:53804_1:N:0:GCCAAT Contig331910 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5390:54267_1:N:0:GCCAAT Contig14458 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19691:56568_1:N:0:GCCAAT Contig203423 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14000:57494_1:N:0:GCCAAT Contig48874 143 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20506:59716_1:N:0:GCCAAT Contig22767 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1460:60041_1:N:0:GCCAAT Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16864:60125_1:N:0:GCCAAT Contig539130 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3445:61116_1:N:0:GCCAAT Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7699:63478_1:N:0:GCCAAT Contig243113 232 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3587:67526_1:N:0:GCCAAT Contig433808 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21110:69896_1:N:0:GCCAAT Contig339022 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12734:71587_1:N:0:GCCAAT Contig575169 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10197:72442_1:N:0:GCCAAT Contig23366 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6871:74113_1:N:0:GCCAAT Contig159433 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3678:76115_1:N:0:GCCAAT Contig16448 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4626:76976_1:N:0:GCCAAT Contig348324 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14449:82888_1:N:0:GCCAAT Contig443794 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3621:83199_1:N:0:GCCAAT Contig282460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4882:83490_1:N:0:GCCAAT Contig471935 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14918:87467_1:N:0:GCCAAT Contig360581 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21251:88226_1:N:0:GCCAAT Contig620233 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11255:88757_1:N:0:GCCAAT Contig277892 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17111:94571_1:N:0:GCCAAT Contig54998 34996 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15692:97780_1:N:0:GCCAAT Contig360690 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14036:98817_1:N:0:GCCAAT Contig248132 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10525:99430_1:N:0:GCCAAT Contig319506 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17559:100509_1:N:0:GCCAAT Contig657879 110 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5608:100810_1:N:0:GCCAAT Contig54772 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3635:2764_1:N:0:GCCAAT Contig212711 416 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16503:3659_1:N:0:GCCAAT Contig667680 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21074:3522_1:N:0:GCCAAT Contig692473 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1548:4060_1:N:0:GCCAAT Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7705:4386_1:N:0:GCCAAT Contig2942 6988 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18356:5560_1:N:0:GCCAAT Contig161878 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19459:5704_1:N:0:GCCAAT Contig13062 214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11962:5812_1:N:0:GCCAAT Contig689148 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19067:7388_1:N:0:GCCAAT Contig384852 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2735:7633_1:N:0:GCCAAT Contig262458 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10118:8081_1:N:0:GCCAAT Contig432445 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8505:9038_1:N:0:GCCAAT Contig39416 2223 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14063:9039_1:N:0:GCCAAT Contig252927 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12474:12649_1:N:0:GCCAAT Contig435384 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13509:14564_1:N:0:GCCAAT Contig12009 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17567:17346_1:N:0:GCCAAT Contig416276 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19949:18387_1:N:0:GCCAAT Contig686572 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1448:19339_1:N:0:GCCAAT Contig36268 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8827:19577_1:N:0:GCCAAT Contig386738 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16540:20106_1:N:0:GCCAAT Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15195:21951_1:N:0:GCCAAT Contig60837 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20225:26107_1:N:0:GCCAAT Contig527507 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7811:26558_1:N:0:GCCAAT Contig315354 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17967:26932_1:N:0:GCCAAT Contig422809 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3893:28124_1:N:0:GCCAAT Contig75355 2656 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4887:29385_1:N:0:GCCAAT Contig622710 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13045:29553_1:N:0:GCCAAT Contig316580 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11954:32178_1:N:0:GCCAAT Contig642143 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13714:32979_1:N:0:GCCAAT Contig384784 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5006:35774_1:N:0:GCCAAT Contig688325 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10267:35879_1:N:0:GCCAAT Contig218122 395 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9763:36872_1:N:0:GCCAAT Contig24547 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4480:37715_1:N:0:GCCAAT Contig61589 13319 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7152:38931_1:N:0:GCCAAT Contig182820 2403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17381:39555_1:N:0:GCCAAT Contig34610 29594 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1390:42201_1:N:0:GCCAAT Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10525:42377_1:N:0:GCCAAT Contig34422 11397 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14866:42517_1:N:0:GCCAAT Contig17057 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4591:45443_1:N:0:GCCAAT Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9460:45623_1:N:0:GCCAAT Contig183189 607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9475:45669_1:N:0:GCCAAT Contig183189 607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1635:46038_1:N:0:GCCAAT Contig147589 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10955:46591_1:N:0:GCCAAT Contig515784 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5848:49362_1:N:0:GCCAAT Contig298588 145 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9230:51630_1:N:0:GCCAAT Contig409377 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2616:53196_1:N:0:GCCAAT Contig676640 298 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11345:54323_1:N:0:GCCAAT Contig221488 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2702:54597_1:N:0:GCCAAT Contig305059 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5046:54759_1:N:0:GCCAAT Contig575169 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11328:57597_1:N:0:GCCAAT Contig30765 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16809:58095_1:N:0:GCCAAT Contig302723 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9193:58264_1:N:0:GCCAAT Contig604854 816 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12493:60817_1:N:0:GCCAAT Contig384272 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2493:61902_1:N:0:GCCAAT Contig100874 20152 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14397:63022_1:N:0:GCCAAT Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16278:63176_1:N:0:GCCAAT Contig34929 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6520:63380_1:N:0:GCCAAT Contig633960 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12255:64337_1:N:0:GCCAAT Contig580405 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17400:64307_1:N:0:GCCAAT Contig680104 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13586:66574_1:N:0:GCCAAT Contig544677 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13922:68640_1:N:0:GCCAAT Contig435263 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8351:68890_1:N:0:GCCAAT Contig311811 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9273:70231_1:N:0:GCCAAT Contig192302 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14788:70310_1:N:0:GCCAAT Contig161521 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7930:71473_1:N:0:GCCAAT Contig447798 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19159:74425_1:N:0:GCCAAT Contig54345 10149 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20021:74400_1:N:0:GCCAAT Contig73251 13667 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19636:75092_1:N:0:GCCAAT Contig565962 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11606:75970_1:N:0:GCCAAT Contig203423 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14227:76820_1:N:0:GCCAAT Contig551546 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12077:77237_1:N:0:GCCAAT Contig660309 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20911:78358_1:N:0:GCCAAT Contig172087 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5448:79809_1:N:0:GCCAAT Contig156439 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5776:79786_1:N:0:GCCAAT Contig634722 307 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9291:81634_1:N:0:GCCAAT Contig49846 6955 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14628:81622_1:N:0:GCCAAT Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7577:82759_1:N:0:GCCAAT Contig244253 190 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14778:83083_1:N:0:GCCAAT Contig194937 454 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6562:85219_1:N:0:GCCAAT Contig554736 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2875:88049_1:N:0:GCCAAT Contig50844 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14478:88408_1:N:0:GCCAAT Contig462768 141 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14009:89240_1:N:0:GCCAAT Contig270296 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18823:89337_1:N:0:GCCAAT Contig349057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20295:89516_1:N:0:GCCAAT Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19071:90300_1:N:0:GCCAAT Contig500457 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8898:91644_1:N:0:GCCAAT Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17171:91704_1:N:0:GCCAAT Contig212711 416 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13862:93811_1:N:0:GCCAAT Contig102838 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4024:94124_1:N:0:GCCAAT Contig177197 841 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18809:96437_1:N:0:GCCAAT Contig54452 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20786:96573_1:N:0:GCCAAT Contig40020 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3919:97468_1:N:0:GCCAAT Contig262735 4721 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11463:97428_1:N:0:GCCAAT Contig691138 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12182:98308_1:N:0:GCCAAT Contig299699 154 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6966:99308_1:N:0:GCCAAT Contig558747 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15897:100122_1:N:0:GCCAAT Contig206780 430 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18393:101064_1:N:0:GCCAAT Contig148677 1399 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1388:6026_1:N:0:GCCAAT Contig123294 818 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18172:7596_1:N:0:GCCAAT Contig640164 279 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7194:7861_1:N:0:GCCAAT Contig304376 10127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17212:8434_1:N:0:GCCAAT Contig14615 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10111:8520_1:N:0:GCCAAT Contig251907 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16687:9658_1:N:0:GCCAAT Contig425033 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20447:10896_1:N:0:GCCAAT Contig539646 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7446:11076_1:N:0:GCCAAT Contig182141 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16284:11782_1:N:0:GCCAAT Contig412064 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17982:14411_1:N:0:GCCAAT Contig17091 74841 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19407:14756_1:N:0:GCCAAT Contig431614 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15031:16567_1:N:0:GCCAAT Contig322010 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1694:16835_1:N:0:GCCAAT Contig24949 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16767:18298_1:N:0:GCCAAT Contig39499 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15342:21089_1:N:0:GCCAAT Contig3979 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5021:23715_1:N:0:GCCAAT Contig322052 401 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6614:24668_1:N:0:GCCAAT Contig277106 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20968:24979_1:N:0:GCCAAT Contig663736 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13475:27621_1:N:0:GCCAAT Contig361755 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19854:28417_1:N:0:GCCAAT Contig71779 14343 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5387:31433_1:N:0:GCCAAT Contig390568 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19037:32119_1:N:0:GCCAAT Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13342:32890_1:N:0:GCCAAT Contig79708 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7594:33796_1:N:0:GCCAAT Contig543724 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7577:33800_1:N:0:GCCAAT Contig543724 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5781:34845_1:N:0:GCCAAT Contig15775 360 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12837:35466_1:N:0:GCCAAT Contig237709 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9334:35538_1:N:0:GCCAAT Contig236392 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11545:36087_1:N:0:GCCAAT Contig312365 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14793:36761_1:N:0:GCCAAT Contig687005 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19142:37410_1:N:0:GCCAAT Contig141630 2067 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14494:38887_1:N:0:GCCAAT Contig310888 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7233:40452_1:N:0:GCCAAT Contig31430 23080 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12960:42659_1:N:0:GCCAAT Contig636632 224 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13063:43062_1:N:0:GCCAAT Contig202913 765 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5393:43838_1:N:0:GCCAAT Contig465569 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9557:44072_1:N:0:GCCAAT Contig394203 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11632:45294_1:N:0:GCCAAT Contig158700 542 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10420:46864_1:N:0:GCCAAT Contig604651 162 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1889:48369_1:N:0:GCCAAT Contig4463 2756 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14968:48981_1:N:0:GCCAAT Contig294152 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13511:49955_1:N:0:GCCAAT Contig262772 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10414:50155_1:N:0:GCCAAT Contig487961 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17069:52531_1:N:0:GCCAAT Contig692013 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5135:53316_1:N:0:GCCAAT Contig6141 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7075:55417_1:N:0:GCCAAT Contig493405 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9418:55577_1:N:0:GCCAAT Contig569027 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12666:58317_1:N:0:GCCAAT Contig206982 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11177:59168_1:N:0:GCCAAT Contig316611 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12795:59346_1:N:0:GCCAAT Contig108449 1169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18188:63776_1:N:0:GCCAAT Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2862:64301_1:N:0:GCCAAT Contig335318 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7835:64793_1:N:0:GCCAAT Contig385709 142 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4391:65339_1:N:0:GCCAAT Contig59947 3804 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4453:65751_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11343:66080_1:N:0:GCCAAT Contig282075 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18721:69895_1:N:0:GCCAAT Contig292519 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20756:69822_1:N:0:GCCAAT Contig229944 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6488:70417_1:N:0:GCCAAT Contig119718 872 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11443:71924_1:N:0:GCCAAT Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4145:72284_1:N:0:GCCAAT Contig441029 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16669:73456_1:N:0:GCCAAT Contig684773 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9020:75070_1:N:0:GCCAAA Contig137233 763 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11919:76859_1:N:0:GCCAAT Contig614247 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5132:77603_1:N:0:GCCAAT Contig220845 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17466:77699_1:N:0:GCCAAT Contig306340 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4650:78241_1:N:0:GCCAAT Contig213739 1425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15027:78037_1:N:0:GCCAAT Contig116263 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6101:78609_1:N:0:GCCAAT Contig10438 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12081:79355_1:N:0:GCCAAT Contig82612 8549 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14694:82840_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20910:87199_1:N:0:GCCAAT Contig107259 4042 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3002:88305_1:N:0:GCCAAT Contig64084 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14615:89173_1:N:0:GCCAAT Contig539646 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5674:90245_1:N:0:GCCAAT Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12204:90482_1:N:0:GCCAAT Contig339022 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18141:90702_1:N:0:GCCAAT Contig449725 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11057:91764_1:N:0:GCCAAT Contig20750 851 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9187:93891_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17921:93937_1:N:0:GCCAAT Contig695026 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19689:94068_1:N:0:GCCAAT Contig59209 1649 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9616:95293_1:N:0:GCCAAT Contig79534 1873 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9639:96143_1:N:0:GCCAAT Contig237538 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18944:97960_1:N:0:GCCAAT Contig380592 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4714:100239_1:N:0:GCCAAA Contig87958 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8080:100432_1:N:0:GCCAAT Contig922 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13666:100601_1:N:0:GCCAAT Contig170782 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8499:100986_1:N:0:GCCAAT Contig638533 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19658:3192_1:N:0:GCCAAT Contig96166 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14210:3257_1:N:0:GCCCAT Contig276379 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7399:4628_1:N:0:GCCAAT Contig348855 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12809:5690_1:N:0:GCCAAT Contig460831 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9835:6091_1:N:0:GCCAAT Contig17057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2824:6339_1:N:0:GCCAAT Contig676413 150 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20196:6308_1:N:0:GCCAAT Contig150475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3248:7540_1:N:0:GCCAAT Contig106279 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11228:8241_1:N:0:GCCAAT Contig451535 155 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5808:11250_1:N:0:GCCAAT Contig102113 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8355:11743_1:N:0:GCCAAT Contig145743 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7208:12048_1:N:0:GCCAAT Contig279960 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20390:12271_1:N:0:GCCAAT Contig265086 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15629:12703_1:N:0:GCCAAT Contig313039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4535:14010_1:N:0:GCCAAT Contig34929 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8970:14854_1:N:0:GCCAAT Contig594031 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7197:15717_1:N:0:GCCAAT Contig534404 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3271:16442_1:N:0:GCCAAT Contig108449 1169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3559:18393_1:N:0:GCCAAT Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19909:18640_1:N:0:GCCAAT Contig560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10068:19336_1:N:0:GCCAAT Contig357735 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10064:19371_1:N:0:GCCAAT Contig357735 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14904:20676_1:N:0:GCCAAT Contig3608 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3924:21718_1:N:0:GCCAAT Contig517546 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19488:22700_1:N:0:GCCAAT Contig27302 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8080:23078_1:N:0:GCCAAT Contig23644 1606 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2389:23671_1:N:0:GCCAAT Contig299323 152 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3832:24844_1:N:0:GCCAAT Contig440951 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5694:25149_1:N:0:GCCAAT Contig535027 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15025:25189_1:N:0:GCCAAT Contig209852 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9211:25670_1:N:0:GCCAAT Contig656429 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10522:26070_1:N:0:GCCAAT Contig302021 120 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6485:27922_1:N:0:GCCAAT Contig344909 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4848:28821_1:N:0:GCCAAT Contig248804 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13308:29670_1:N:0:GCCAAT Contig12829 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11672:32024_1:N:0:GCCAAT Contig99896 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16150:32233_1:N:0:GCCAAT Contig35251 28227 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6941:32520_1:N:0:GCCAAT Contig370029 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13303:33674_1:N:0:GCCAAT Contig140751 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16843:34544_1:N:0:GCCAAT Contig134998 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21145:36218_1:N:0:GCCAAT Contig118046 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17599:36423_1:N:0:GCCAAT Contig573470 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12045:39184_1:N:0:GCCAAT Contig583483 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13065:39191_1:N:0:GCCAAT Contig151756 694 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4421:39800_1:N:0:GCCAAT Contig218980 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5603:41542_1:N:0:GCCAAT Contig469239 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10772:41508_1:N:0:GCCAAT Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3364:42361_1:N:0:GCCAAT Contig60735 11993 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18696:42761_1:N:0:GCCAAT Contig69535 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13252:43054_1:N:0:GCCAAT Contig595941 155 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12799:44197_1:N:0:GCCAAT Contig303881 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13836:44280_1:N:0:GCCAAT Contig104002 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15707:44418_1:N:0:GCCAAT Contig114813 1105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6974:44618_1:N:0:GCCAAT Contig234905 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16021:45610_1:N:0:GCCAAT Contig566129 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10604:45876_1:N:0:GCCAAT Contig243162 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13531:46632_1:N:0:GCCAAT Contig41224 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2768:47453_1:N:0:GCCAAT Contig96730 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16475:47318_1:N:0:GCCAAT Contig190628 701 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19351:48193_1:N:0:GCCAAT Contig170815 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15018:49358_1:N:0:GCCAAT Contig180847 669 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6055:49880_1:N:0:GCCAAT Contig92353 9048 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7607:49777_1:N:0:GCCAAT Contig345745 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17149:50366_1:N:0:GCCAAT Contig670362 262 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20732:50691_1:N:0:GCCAAT Contig449261 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8029:52662_1:N:0:GCCAAT Contig16829 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7089:52829_1:N:0:GCCAAT Contig301781 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8372:54694_1:N:0:GCCAAT Contig563901 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10991:55342_1:N:0:GCCAAT Contig437900 223 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17787:55429_1:N:0:GCCAAT Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15802:55731_1:N:0:GCCAAT Contig642623 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13725:56977_1:N:0:GCCAAT Contig446216 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18453:57549_1:N:0:GCCAAT Contig72902 7665 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12458:57874_1:N:0:GCCAAT Contig415898 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4419:59998_1:N:0:GCCAAT Contig222411 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19223:60859_1:N:0:GCCAAT Contig689060 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12683:61170_1:N:0:GCCAAT Contig342719 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10406:63402_1:N:0:GCCAAT Contig386858 189 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18032:63582_1:N:0:GCCAAT Contig538229 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2956:63880_1:N:0:GCCAAT Contig35214 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2410:64705_1:N:0:GCCAAT Contig271592 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10241:64564_1:N:0:GCCAAT Contig17057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8047:65056_1:N:0:GCCAAT Contig397959 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17212:65861_1:N:0:GCCAAT Contig98002 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3577:66284_1:N:0:GCCAAT Contig688934 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13021:67722_1:N:0:GCCAAT Contig61703 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10890:68494_1:N:0:GCCAAT Contig625647 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3110:69517_1:N:0:GCCAAT Contig563330 401 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6817:69580_1:N:0:GCCAAT Contig616588 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3206:72016_1:N:0:GCCAAT Contig2476 19388 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17143:76527_1:N:0:GCCAAT Contig634792 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13066:76777_1:N:0:GCCAAT Contig424300 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3013:77801_1:N:0:GCCAAT Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4894:77917_1:N:0:GCCAAT Contig233571 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17590:78642_1:N:0:GCCAAT Contig318779 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11679:80633_1:N:0:GCCAAT Contig617279 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14660:80877_1:N:0:GCCAAT Contig387100 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13921:85210_1:N:0:GCCAAT Contig457780 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7839:85478_1:N:0:GCCAAT Contig82714 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6218:86971_1:N:0:GCCAAT Contig12009 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9808:87671_1:N:0:GCCAAT Contig160486 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19816:87977_1:N:0:GCCAAT Contig143583 4040 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9553:88636_1:N:0:GCCAAT Contig448202 133 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1838:89571_1:N:0:GCCAAT Contig205815 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21148:89787_1:N:0:GCCAAT Contig183189 607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12513:92493_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19335:93236_1:N:0:GCCAAT Contig631585 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5286:93711_1:N:0:GCCAAT Contig391594 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15293:93739_1:N:0:GCCAAT Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19202:94325_1:N:0:GCCAAT Contig338919 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17447:95347_1:N:0:GCCAAT Contig129204 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16545:97173_1:N:0:GCCAAT Contig407304 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20197:98870_1:N:0:GCCAAT Contig209685 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11734:99634_1:N:0:GCCAAT Contig213739 1425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7723:100708_1:N:0:GCCAAT Contig120097 3284 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11427:100909_1:N:0:GCCAAT Contig685629 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7653:2170_1:N:0:GCCAAT Contig593612 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17991:2447_1:N:0:GCCAAT Contig396548 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4657:3031_1:N:0:GCCAAT Contig310027 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19922:3921_1:N:0:GCCAAT Contig459160 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16158:5749_1:N:0:GCCAAT Contig22523 25232 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8871:7770_1:N:0:GCCAAT Contig684990 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2615:8259_1:N:0:GCCAAT Contig446390 194 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2169:10117_1:N:0:GCCAAT Contig281607 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18943:10197_1:N:0:GCCAAT Contig474502 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1769:10937_1:N:0:GCCAAT Contig323383 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10914:13106_1:N:0:GCCAAT Contig175238 982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7347:13863_1:N:0:GCCAAT Contig33199 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16853:14770_1:N:0:GCCAAT Contig206982 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18051:14854_1:N:0:GCCAAT Contig36268 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19772:17119_1:N:0:GCCAAT Contig31360 38607 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17994:17793_1:N:0:GCCAAT Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3744:18484_1:N:0:GCCAAT Contig8757 740 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16815:19605_1:N:0:GCCAAT Contig72837 22547 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7300:22239_1:N:0:GCCAAT Contig104947 4077 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7896:22099_1:N:0:GCCAAT Contig381956 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14909:22826_1:N:0:GCCAAT Contig661072 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16578:22889_1:N:0:GCCAAT Contig12331 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16266:25591_1:N:0:GCCAAT Contig473948 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17974:25711_1:N:0:GCCAAT Contig615184 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10263:26611_1:N:0:GCCAAT Contig178294 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17051:27315_1:N:0:GCCAAT Contig79227 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20100:28575_1:N:0:GCCAAT Contig268993 192 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8557:28793_1:N:0:GCCAAT Contig687927 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10134:28766_1:N:0:GCCAAT Contig305996 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13141:29032_1:N:0:GCCAAT Contig502181 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16047:29582_1:N:0:GCCAAT Contig382531 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15658:29877_1:N:0:GCCAAT Contig9848 760 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18019:30497_1:N:0:GCCAAT Contig91220 7579 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20643:31127_1:N:0:GCCAAT Contig158704 1090 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13977:32654_1:N:0:GCCAAT Contig186444 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8367:34466_1:N:0:GCCAAT Contig161718 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14821:35953_1:N:0:GCCAAT Contig404460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7928:36910_1:N:0:GCCAAT Contig358352 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15419:37230_1:N:0:GCCAAT Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9444:37565_1:N:0:GCCAAT Contig312365 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13709:39185_1:N:0:GCCAAT Contig174260 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5599:40406_1:N:0:GCCAAT Contig293379 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3529:41280_1:N:0:GCCAAT Contig282460 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7102:42663_1:N:0:GCCAAT Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2536:44253_1:N:0:GCCAAT Contig17057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4527:44467_1:N:0:GCCAAT Contig379249 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11362:45700_1:N:0:GCCAAT Contig319929 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2764:47588_1:N:0:GCCAAT Contig224276 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5110:47940_1:N:0:GCCAAT Contig443584 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12357:48859_1:N:0:GCCAAT Contig453114 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4332:49993_1:N:0:GCCAAT Contig642394 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2889:51637_1:N:0:GCCAAT Contig425032 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20359:52007_1:N:0:GCCAAT Contig401396 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7725:52692_1:N:0:GCCAAT Contig27302 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18975:53548_1:N:0:GCCAAT Contig403876 200 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6207:54085_1:N:0:GCCAAT Contig396585 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3157:54439_1:N:0:GCCAAT Contig385479 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21196:54744_1:N:0:GCCAAT Contig299700 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16455:57334_1:N:0:GCCAAT Contig260781 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19904:57611_1:N:0:GCCAAT Contig126521 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3855:58686_1:N:0:GCCAAT Contig357508 133 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3819:58868_1:N:0:GCCAAT Contig263078 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6937:62975_1:N:0:GCCAAT Contig385412 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8268:64805_1:N:0:GCCAAT Contig652642 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4834:65316_1:N:0:GCCAAT Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6960:66385_1:N:0:GCCAAT Contig96190 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2223:66522_1:N:0:GCCAAT Contig430738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17141:67607_1:N:0:GCCAAT Contig388838 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14136:68622_1:N:0:GCCAAT Contig437042 639 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5247:68886_1:N:0:GCCAAT Contig356374 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5122:69158_1:N:0:GCCAAT Contig43685 5339 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7389:69856_1:N:0:GCCAAT Contig634015 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10037:69872_1:N:0:GCCAAT Contig311609 158 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18443:70004_1:N:0:GCCAAT Contig342405 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8621:70722_1:N:0:GCCAAT Contig465792 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18745:70792_1:N:0:GCCAAT Contig143329 2210 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9836:71371_1:N:0:GCCAAA Contig310027 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7420:71660_1:N:0:GCCAAT Contig108449 1170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3575:73336_1:N:0:GCCAAT Contig346524 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6181:75039_1:N:0:GCCAAT Contig260781 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16256:75395_1:N:0:GCCAAT Contig401906 136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7962:75934_1:N:0:GCCAAT Contig556038 407 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7002:77533_1:N:0:GCCAAT Contig681182 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21088:77730_1:N:0:GCCAAT Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7684:78110_1:N:0:GCCAAT Contig166447 712 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17059:80651_1:N:0:GCCAAT Contig306375 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6019:83178_1:N:0:GCCAAT Contig303620 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5094:83500_1:N:0:GCCAAT Contig489540 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3169:88017_1:N:0:GCCAAT Contig201319 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7295:88423_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16822:90287_1:N:0:GCCAAA Contig218635 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3138:91098_1:N:0:GCCAAT Contig385474 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21287:93001_1:N:0:GCCAAT Contig244102 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12397:93836_1:N:0:GCCAAT Contig303267 201 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8879:94418_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1741:95676_1:N:0:GCCAAT Contig403649 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6498:95886_1:N:0:GCCAAT Contig238624 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16674:96972_1:N:0:GCCAAT Contig134676 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20837:96872_1:N:0:GCCAAT Contig41355 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17839:97130_1:N:0:GCCAAT Contig20710 16733 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8409:97430_1:N:0:GCCAAT Contig665817 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15062:98432_1:N:0:GCCAAT Contig624216 276 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14972:98695_1:N:0:GCCAAT Contig163652 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14685:100560_1:N:0:GCCAAT Contig468130 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9999:4453_1:N:0:GCCAAT Contig608543 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5204:5215_1:N:0:GCCAAT Contig123371 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7773:5374_1:N:0:GCCAAT Contig660793 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4806:7702_1:N:0:GCCAAT Contig512283 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2174:8247_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13438:9414_1:N:0:GCCAAT Contig670368 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14931:9515_1:N:0:GCCAAT Contig163614 436 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19902:11058_1:N:0:GCCAAT Contig377889 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14639:11455_1:N:0:GCCAAT Contig56610 112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15620:13060_1:N:0:GCCAAT Contig7453 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19857:13680_1:N:0:GCCAAT Contig1284 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1367:14403_1:N:0:GCCAAT Contig438548 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9828:14628_1:N:0:GCCAAT Contig59209 1646 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1199:15625_1:N:0:GCCAAT Contig57995 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19775:16882_1:N:0:GCCAAT Contig519356 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14061:19204_1:N:0:GCCAAT Contig492468 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8378:20115_1:N:0:GCCAAT Contig397880 314 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4766:20910_1:N:0:GCCAAT Contig689588 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1763:21420_1:N:0:GCCAAT Contig66645 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8372:21612_1:N:0:GCCAAT Contig352929 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4461:24304_1:N:0:GCCAAT Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19058:26453_1:N:0:GCCAAT Contig477446 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10118:26911_1:N:0:GCCAAT Contig553159 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9888:27239_1:N:0:GCCAAT Contig687471 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9461:27646_1:N:0:GCCAAT Contig26196 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15891:30137_1:N:0:GCCAAT Contig631463 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2134:30617_1:N:0:GCCAAT Contig661304 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19446:33656_1:N:0:GCCAAT Contig346607 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11495:33893_1:N:0:GCCAAT Contig528109 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20648:36011_1:N:0:GCCAAT Contig502208 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12873:37134_1:N:0:GCCAAT Contig525667 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16673:37458_1:N:0:GCCAAT Contig671415 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2851:38472_1:N:0:GCCAAT Contig500457 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17013:38328_1:N:0:GCCAAT Contig695085 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14299:39155_1:N:0:GCCAAT Contig228419 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3128:40482_1:N:0:GCCAAT Contig655120 263 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6292:41034_1:N:0:GCCAAT Contig601288 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17430:41777_1:N:0:GCCAAT Contig568420 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18342:43043_1:N:0:GCCAAT Contig108449 1170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12687:44043_1:N:0:GCCAAT Contig408104 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20364:44130_1:N:0:GCCAAT Contig62730 10859 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2122:44549_1:N:0:GCCAAT Contig80624 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4023:45169_1:N:0:GCCAAT Contig219535 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17994:45232_1:N:0:GCCAAT Contig612911 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20556:45044_1:N:0:GCCAAT Contig160668 3020 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3787:47229_1:N:0:GCCAAT Contig286113 1755 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16469:47066_1:N:0:GCCAAT Contig655794 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14992:49014_1:N:0:GCCAAT Contig373633 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15388:49177_1:N:0:GCCAAT Contig152627 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7344:49396_1:N:0:GCCAAT Contig98714 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16734:49718_1:N:0:GCCAAT Contig30661 1226 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4816:50004_1:N:0:GCCAAT Contig63990 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7557:52951_1:N:0:GCCAAT Contig487890 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1444:53458_1:N:0:GCCAAT Contig37347 4095 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2739:53423_1:N:0:GCCAAT Contig580195 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15279:53752_1:N:0:GCCAAT Contig296428 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4462:54088_1:N:0:GCCAAT Contig204100 433 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13458:54228_1:N:0:GCCAAT Contig135893 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8793:54907_1:N:0:GCCAAT Contig68212 13491 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15639:56627_1:N:0:GCCAAT Contig191365 634 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16810:58688_1:N:0:GCCAAT Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1527:58791_1:N:0:GCCAAT Contig100388 1699 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4742:60250_1:N:0:GCCAAT Contig391113 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4080:61336_1:N:0:GCCAAT Contig392275 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10652:62816_1:N:0:GCCAAT Contig64465 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18258:63896_1:N:0:GCCAAT Contig191551 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15002:65078_1:N:0:GCCAAT Contig102838 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7755:66242_1:N:0:GCCAAT Contig501373 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3184:66415_1:N:0:GCCAAT Contig637086 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3959:67260_1:N:0:GCCAAT Contig480000 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5591:67591_1:N:0:GCCAAT Contig516416 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5268:68213_1:N:0:GCCAAT Contig368416 131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3906:69341_1:N:0:GCCAAT Contig392672 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17307:69273_1:N:0:GCCAAT Contig211103 761 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6557:69846_1:N:0:GCCAAT Contig475113 463 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4677:70730_1:N:0:GCCAAA Contig214221 566 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15315:70979_1:N:0:GCCAAT Contig363413 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7622:71068_1:N:0:GCCAAT Contig563199 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12711:71847_1:N:0:GCCAAT Contig46987 7839 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15320:74546_1:N:0:GCCAAT Contig633833 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5614:76678_1:N:0:GCCAAT Contig75027 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9802:76999_1:N:0:GCCAAT Contig432261 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16049:80563_1:N:0:GCCAAT Contig10870 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2864:81357_1:N:0:GCCAAT Contig2853 8527 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6205:81273_1:N:0:GCCAAT Contig33023 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20844:81492_1:N:0:GCCAAT Contig175015 756 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8135:83151_1:N:0:GCCAAT Contig68472 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7225:85679_1:N:0:GCCAAT Contig226780 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8962:85614_1:N:0:GCCAAT Contig436363 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11670:86445_1:N:0:GCCAAT Contig380364 136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18255:87544_1:N:0:GCCAAT Contig133776 3443 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17674:88170_1:N:0:GCCAAT Contig187721 938 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1128:88685_1:N:0:GCCAAT Contig597461 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3760:89228_1:N:0:GCCAAT Contig212711 416 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17198:90329_1:N:0:GCCAAT Contig185711 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9226:90651_1:N:0:GCCAAT Contig151534 1985 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17697:90597_1:N:0:GCCAAT Contig171908 677 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20452:91565_1:N:0:GCCAAT Contig326210 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20977:93392_1:N:0:GCCAAT Contig390934 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7235:93902_1:N:0:GCCAAT Contig322890 225 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4763:96335_1:N:0:GCCAAT Contig431709 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12367:97398_1:N:0:GCCAAT Contig285569 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12368:97416_1:N:0:GCCAAT Contig285569 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4379:97542_1:N:0:GCCAAT Contig589348 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7443:97512_1:N:0:GCCAAT Contig597461 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2275:99089_1:N:0:GCCAAT Contig34958 19723 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6924:100138_1:N:0:GCCAAT Contig373669 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8924:100174_1:N:0:GCCAAT Contig294980 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10615:100758_1:N:0:GCCAAT Contig642394 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6682:3208_1:N:0:GCCAAT Contig11638 2412 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20621:3152_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9821:4230_1:N:0:GCCAAT Contig209389 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2182:5813_1:N:0:GCCAAT Contig380926 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2911:10284_1:N:0:GCCAAT Contig30330 9740 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12279:11664_1:N:0:GCCAAT Contig608213 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18523:12336_1:N:0:GCCAAT Contig19169 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1649:12613_1:N:0:GCCAAT Contig32234 6568 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14409:13398_1:N:0:GCCAAT Contig485540 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21079:13617_1:N:0:GCCAAT Contig1918 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6908:15492_1:N:0:GCCAAT Contig397146 363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15572:16164_1:N:0:GCCAAT Contig52515 24346 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17754:16751_1:N:0:GCCAAT Contig634279 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19458:18390_1:N:0:GCCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6419:18764_1:N:0:GCCAAT Contig652377 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17104:19112_1:N:0:GCCAAT Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15472:20656_1:N:0:GCCAAT Contig304261 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5354:22116_1:N:0:GCCAAT Contig376285 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14050:23302_1:N:0:GCCAAT Contig133326 1998 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8895:24153_1:N:0:GCCAAT Contig176125 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16174:25111_1:N:0:GCCAAT Contig500092 274 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3851:26054_1:N:0:GCCAAT Contig324728 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5894:27839_1:N:0:GCCAAT Contig188303 712 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19448:29409_1:N:0:GCCAAT Contig48148 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2561:30197_1:N:0:GCCAAT Contig144517 874 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18846:30110_1:N:0:GCCAAT Contig301221 277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7438:30637_1:N:0:GCCAAT Contig420292 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5924:30816_1:N:0:GCCAAT Contig349057 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2766:32151_1:N:0:GCCAAT Contig635923 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16785:32146_1:N:0:GCCAAT Contig662056 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19999:32260_1:N:0:GCCAAT Contig115524 3088 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10236:32593_1:N:0:GCCAAT Contig599172 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8528:32820_1:N:0:GCCAAT Contig176635 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1756:34473_1:N:0:GCCAAT Contig69353 14452 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7810:34670_1:N:0:GCCAAT Contig125463 2106 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3595:36267_1:N:0:GCCAAT Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1349:36557_1:N:0:GCCAAT Contig132708 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4864:37094_1:N:0:GCCAAT Contig56737 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15297:37463_1:N:0:GCCAAT Contig14259 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3408:37978_1:N:0:GCCAAT Contig412615 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6058:38052_1:N:0:GCCAAT Contig118157 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7432:38037_1:N:0:GCCAAT Contig130184 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9875:38200_1:N:0:GCCAAT Contig398210 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19328:39087_1:N:0:GCCAAT Contig72017 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2677:39352_1:N:0:GCCAAT Contig428568 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8884:40727_1:N:0:GCCAAT Contig27783 23242 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17340:41051_1:N:0:GCCAAT Contig310027 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4215:41791_1:N:0:GCCAAT Contig28864 27255 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19521:42069_1:N:0:GCCAAT Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8803:42266_1:N:0:GCCAAT Contig428079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11062:42921_1:N:0:GCCAAT Contig304083 219 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5081:43482_1:N:0:GCCAAT Contig598386 597 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2993:43764_1:N:0:GCCAAT Contig629506 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19387:43858_1:N:0:GCCAAT Contig84348 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7855:47539_1:N:0:GCCAAT Contig153932 6205 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5171:48271_1:N:0:GCCAAT Contig9771 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15631:48291_1:N:0:GCCAAT Contig647675 445 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4722:51127_1:N:0:GCCAAT Contig232722 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21079:52396_1:N:0:GCCAAT Contig634945 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2153:54426_1:N:0:GCCAAT Contig287217 798 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16272:56813_1:N:0:GCCAAT Contig96252 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6394:58692_1:N:0:GCCAAT Contig435255 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8424:59068_1:N:0:GCCAAT Contig616821 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13290:59524_1:N:0:GCCAAT Contig220546 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4311:60654_1:N:0:GCCAAT Contig358274 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11385:60600_1:N:0:GCCAAT Contig254405 478 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10567:62329_1:N:0:GCCAAT Contig296659 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13424:64542_1:N:0:GCCAAT Contig20320 3619 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15868:64847_1:N:0:GCCAAA Contig541896 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10920:65021_1:N:0:GCCAAT Contig40297 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5823:66490_1:N:0:GCCAAT Contig309032 1105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4061:66677_1:N:0:GCCAAT Contig661959 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13194:70555_1:N:0:GCCAAT Contig485270 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15489:71422_1:N:0:GCCAAT Contig44519 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3010:72547_1:N:0:GCCAAT Contig483363 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15524:72544_1:N:0:GCCAAT Contig28157 62347 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1266:74415_1:N:0:GCCAAT Contig138537 1199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8217:76354_1:N:0:GCCAAT Contig295606 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5570:77229_1:N:0:GCCAAT Contig106896 2964 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19319:77112_1:N:0:GCCAAT Contig123080 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15204:79125_1:N:0:GCCAAT Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10463:80426_1:N:0:GCCAAT Contig523746 140 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16439:80487_1:N:0:GCCAAT Contig49109 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8590:80712_1:N:0:GCCAAT Contig432555 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1635:85306_1:N:0:GCCAAT Contig92262 5018 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20631:85923_1:N:0:GCCAAT Contig521811 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7229:86113_1:N:0:GCCAAT Contig576478 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20765:86305_1:N:0:GCCAAT Contig44932 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8404:86743_1:N:0:GCCAAT Contig319485 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17068:86622_1:N:0:GCCAAT Contig495 38057 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8399:87180_1:N:0:GCCAAT Contig134879 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15405:87771_1:N:0:GCCAAT Contig319334 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13273:88957_1:N:0:GCCAAT Contig438105 113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7081:90297_1:N:0:GCCAAT Contig633668 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9421:90534_1:N:0:GCCAAT Contig523686 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1345:91654_1:N:0:GCCAAT Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16040:94741_1:N:0:GCCAAT Contig105715 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9858:96572_1:N:0:GCCAAT Contig243100 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4932:96878_1:N:0:GCCAAT Contig548765 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10039:98615_1:N:0:GCCAAT Contig331680 107 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15124:98875_1:N:0:GCCAAT Contig631766 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16599:99621_1:N:0:GCCAAT Contig102838 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15718:100430_1:N:0:GCCAAT Contig143965 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5265:2783_1:N:0:GCCAAT Contig8297 6385 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5320:2894_1:N:0:GCCAAT Contig385553 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6224:2871_1:N:0:GCCAAT Contig257123 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4400:3265_1:N:0:GCCAAT Contig222128 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5032:3301_1:N:0:GCCAAT Contig400518 431 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1848:3715_1:N:0:GCCAAT Contig194341 846 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3387:4367_1:N:0:GCCAAT Contig392759 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4576:4929_1:N:0:GCCAAT Contig465922 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10771:5284_1:N:0:GCCAAT Contig426237 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15852:6210_1:N:0:GCCAAT Contig135488 2214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6882:6563_1:N:0:GCCAAT Contig526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6731:6804_1:N:0:GCCAAT Contig135488 2214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3721:7894_1:N:0:GCCAAT Contig65095 5006 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9120:7833_1:N:0:GCCAAT Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19703:9559_1:N:0:GCCAAT Contig657289 115 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6522:10133_1:N:0:GCCAAT Contig15471 215 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8767:10040_1:N:0:GCCAAT Contig73900 1722 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20604:10670_1:N:0:GCCAAT Contig309032 1103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3497:10783_1:N:0:GCCAAT Contig410063 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16275:11018_1:N:0:GCCAAT Contig87693 2676 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1751:13030_1:N:0:GCCAAT Contig627510 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9695:13676_1:N:0:GCCAAT Contig104925 2029 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4452:14221_1:N:0:GCCAAT Contig139777 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6866:14032_1:N:0:GCCAAT Contig387014 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20463:16647_1:N:0:GCCAAT Contig480607 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13056:18173_1:N:0:GCCAAT Contig17965 28042 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2427:19190_1:N:0:GCCAAT Contig168549 384 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3645:19998_1:N:0:GCCAAT Contig96730 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17169:19863_1:N:0:GCCAAT Contig380551 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10201:20271_1:N:0:GCCAAT Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20469:20848_1:N:0:GCCAAT Contig380575 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6265:21306_1:N:0:GCCAAT Contig195358 232 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5634:21766_1:N:0:GCCAAT Contig526039 129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17685:22691_1:N:0:GCCAAT Contig623716 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1691:23242_1:N:0:GCCAAT Contig437755 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20160:23941_1:N:0:GCCAAT Contig231068 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6001:25374_1:N:0:GCCAAT Contig151151 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19840:25632_1:N:0:GCCAAT Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4777:25891_1:N:0:GCCAAT Contig464751 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5429:28465_1:N:0:GCCAAT Contig603493 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18417:28583_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14784:29277_1:N:0:GCCAAT Contig464079 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2602:32514_1:N:0:GCCAAT Contig693862 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11210:33538_1:N:0:GCCAAT Contig281953 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4301:35293_1:N:0:GCCAAT Contig506272 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5859:35991_1:N:0:GCCAAT Contig98073 6376 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5121:36214_1:N:0:GCCAAT Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7501:36773_1:N:0:GCCAAT Contig459645 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18195:37093_1:N:0:GCCAAT Contig66341 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18263:37689_1:N:0:GCCAAT Contig1221 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17402:38028_1:N:0:GCCAAT Contig195995 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5585:38572_1:N:0:GCCAAT Contig467912 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2575:38999_1:N:0:GCCAAT Contig288598 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6817:38837_1:N:0:GCCAAT Contig673201 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14412:39046_1:N:0:GCCAAT Contig77796 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7429:39647_1:N:0:GCCAAT Contig538219 782 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8939:40585_1:N:0:GCCAAT Contig175506 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9019:40565_1:N:0:GCCAAT Contig91948 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9628:40710_1:N:0:GCCAAT Contig553159 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7789:41095_1:N:0:GCCAAT Contig202265 1403 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18073:41894_1:N:0:GCCAAT Contig51916 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19551:41837_1:N:0:GCCAAT Contig569937 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20188:42729_1:N:0:GCCAAT Contig82937 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20791:42694_1:N:0:GCCAAT Contig587916 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16877:42948_1:N:0:GCCAAT Contig690156 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4460:44660_1:N:0:GCCAAT Contig92479 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10379:45260_1:N:0:GCCAAT Contig123718 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7588:46025_1:N:0:GCCAAT Contig231367 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7911:47378_1:N:0:GCCAAT Contig545431 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16616:49119_1:N:0:GCCAAT Contig337426 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13858:50245_1:N:0:GCCAAT Contig25017 5574 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16448:51616_1:N:0:GCCAAT Contig37790 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5506:53043_1:N:0:GCCAAT Contig147908 719 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20195:54144_1:N:0:GCCAAT Contig232039 117 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8614:54777_1:N:0:GCCAAT Contig21483 8466 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14989:54913_1:N:0:GCCAAT Contig66697 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15169:55629_1:N:0:GCCAAT Contig359718 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17602:57529_1:N:0:GCCAAT Contig2371 10293 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11724:60682_1:N:0:GCCAAT Contig122566 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16876:61281_1:N:0:GCCAAT Contig275044 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19926:62249_1:N:0:GCCAAT Contig60042 4731 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13894:63182_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14819:64264_1:N:0:GCCAAT Contig305045 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3468:65249_1:N:0:GCCAAT Contig688325 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17117:65027_1:N:0:GCCAAT Contig669535 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6359:65415_1:N:0:GCCAAT Contig676640 300 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12009:65849_1:N:0:GCCAAT Contig234905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21224:66840_1:N:0:GCCAAT Contig4463 2757 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9405:67197_1:N:0:GCCAAT Contig481559 119 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8752:68058_1:N:0:GCCAAT Contig569670 202 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7749:68323_1:N:0:GCCAAT Contig127307 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5788:68781_1:N:0:GCCAAT Contig435 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15130:68928_1:N:0:GCCAAT Contig506272 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3287:69779_1:N:0:GCCAAT Contig674476 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17020:70281_1:N:0:GCCAAT Contig402077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19064:70831_1:N:0:GCCAAT Contig137089 1039 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20429:71386_1:N:0:GCCAAT Contig542290 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8998:71703_1:N:0:GCCAAT Contig56256 11238 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20607:73002_1:N:0:GCCAAT Contig651377 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21199:73835_1:N:0:GCCAAT Contig556672 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1537:74994_1:N:0:GCCAAT Contig300536 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11585:75650_1:N:0:GCCAAT Contig421427 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8096:76472_1:N:0:GCCAAT Contig209359 1606 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1119:77302_1:N:0:GCCAAT Contig339390 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10272:77901_1:N:0:GCCAAT Contig121792 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3278:78657_1:N:0:GCCAAT Contig109315 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8140:78870_1:N:0:GCCAAT Contig203001 793 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11123:78776_1:N:0:GCCAAT Contig84840 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1973:81804_1:N:0:GCCAAT Contig427238 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1568:82808_1:N:0:GCCAAT Contig471935 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18328:83838_1:N:0:GCCAAT Contig261369 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4052:84793_1:N:0:GCCAAT Contig146962 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5169:85448_1:N:0:GCCAAT Contig449195 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14515:85259_1:N:0:GCCAAT Contig8736 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18174:86755_1:N:0:GCCAAT Contig501334 119 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15280:87037_1:N:0:GCCAAT Contig93717 16359 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18475:88798_1:N:0:GCCAAT Contig39678 4958 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18475:88869_1:N:0:GCCAAT Contig24949 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4667:89790_1:N:0:GCCAAT Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20680:90575_1:N:0:GCCAAT Contig153670 1523 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19491:91235_1:N:0:GCCAAT Contig411016 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6576:91302_1:N:0:GCCAAT Contig348633 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7840:93329_1:N:0:GCCAAT Contig56997 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9461:94168_1:N:0:GCCAAT Contig333078 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14939:94697_1:N:0:GCCAAT Contig544718 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15151:95932_1:N:0:GCCAAT Contig456329 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4000:96193_1:N:0:GCCAAT Contig517546 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11079:96817_1:N:0:GCCAAT Contig198506 577 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12554:97591_1:N:0:GCCAAT Contig28967 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6173:98629_1:N:0:GCCAAT Contig370478 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7895:98897_1:N:0:GCCAAT Contig551740 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8838:100204_1:N:0:GCCAAT Contig11051 1541 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15689:100939_1:N:0:GCCAAT Contig23995 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10490:2390_1:N:0:GCCAAT Contig226093 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13092:2299_1:N:0:GCCAAT Contig343139 127 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4321:3387_1:N:0:GCCAAT Contig23010 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4203:4354_1:N:0:GCCAAT Contig85438 3410 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18735:4979_1:N:0:GCCAAT Contig250311 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1534:5507_1:N:0:GCCAAT Contig192190 695 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18949:5676_1:N:0:GCCAAT Contig256992 182 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5259:6277_1:N:0:GCCAAT Contig544787 150 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18916:6522_1:N:0:GCCAAT Contig525808 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11308:7141_1:N:0:GCCAAT Contig461740 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17745:7625_1:N:0:GCCAAT Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3286:8814_1:N:0:GCCAAT Contig601866 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4631:9790_1:N:0:GCCAAT Contig473259 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8304:10157_1:N:0:GCCAAT Contig233165 161 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8328:11530_1:N:0:GCCAAT Contig218960 1290 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3891:12710_1:N:0:GCCAAT Contig67821 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16360:13543_1:N:0:GCCAAT Contig31505 359 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8335:13970_1:N:0:GCCAAT Contig184708 993 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7342:15615_1:N:0:GCCAAT Contig106811 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12865:18846_1:N:0:GCCAAT Contig231516 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20399:19434_1:N:0:GCCAAT Contig327835 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14789:19524_1:N:0:GCCAAT Contig549992 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14799:19558_1:N:0:GCCAAT Contig549992 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14756:19566_1:N:0:GCCAAT Contig549992 70 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 787129 (78.71%) aligned 0 times 109717 (10.97%) aligned exactly 1 time 103154 (10.32%) aligned >1 times 21.29% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 373180 (37.32%) aligned 0 times 215007 (21.50%) aligned exactly 1 time 4118131000000 ( reads; of these:41.18 % ) aligned >1 times1000000 (62.68% overall alignment rate 100.00%) were unpaired; of these: 788292 (78.83%) aligned 0 times 109041 (10.90%) aligned exactly 1 time 102667 (10.27%) aligned >1 times 21.17% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 370693 (37.07%) aligned 0 times 215823 (21.58%) aligned exactly 1 time 413484 (41.35%) aligned >1 times 62.93% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 6_GCCAAT_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 6_GCCAAT_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 395712 Mapping efficiency: 39.6% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2235158 Total methylated C's in CpG context: 82834 Total methylated C's in CHG context: 7846 Total methylated C's in CHH context: 129683 Total methylated C's in Unknown context: 39 Total unmethylated C's in CpG context: 223364 Total unmethylated C's in CHG context: 403520 Total unmethylated C's in CHH context: 1387911 Total unmethylated C's in Unknown context: 383 C methylated in CpG context: 27.1% C methylated in CHG context: 1.9% C methylated in CHH context: 8.5% C methylated in Unknown context (CN or CHN): 9.2% Bismark completed in 0d 2h 10m 41s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/7_CAGATC_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 7_CAGATC_L001_R1_001_trimmed.fq.gz to 7_CAGATC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 7_CAGATC_L001_R1_001_trimmed.fq.gz to 7_CAGATC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 7_CAGATC_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 7_CAGATC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 7_CAGATC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 7_CAGATC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1544:2214_1:N:0:CAGATC 0 Contig2550_CT_converted 26716 1 31M * 0 0 GGGGTTTTAATAGGGGATTAAAGTTTTATAT HFHIFHJJIJJIIBDBHIIJJII>FHGGGGI AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from 7_CAGATC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1544:2214_1:N:0:CAGATC 16 Contig41168_GA_converted 27152 1 31M * 0 0 ATATAAAACTTTAATCCCCTATTAAAACCCC IGGGGHF>IIJJIIHBDBIIJJIJJHFIHFH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from 7_CAGATC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1544:2214_1:N:0:CAGATC 4 * 0 0 * * 0 0 AAAATTTTAATAAAAAATTAAAATTTTATAT HFHIFHJJIJJIIBDBHIIJJII>FHGGGGI YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 7_CAGATC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1544:2214_1:N:0:CAGATC 4 * 0 0 * * 0 0 AAAATTTTAATAAAAAATTAAAATTTTATAT HFHIFHJJIJJIIBDBHIIJJII>FHGGGGI YT:Z:UU >>> Writing bisulfite mapping results to 7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/7_CAGATC_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1681:2838_1:N:0:CAGATC Contig643204 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20338:5312_1:N:0:CAGATC Contig79999 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17314:12271_1:N:0:CAGATC Contig106048 4246 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13074:13411_1:N:0:CAGATC Contig330930 136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16162:16870_1:N:0:CAGATC Contig4101 7998 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9219:19060_1:N:0:CAGATC Contig219651 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18914:20015_1:N:0:CAGATC Contig263825 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3134:21489_1:N:0:CAGATC Contig26733 12936 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19647:21955_1:N:0:CAGATC Contig139311 6129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12836:22389_1:N:0:CAGATC Contig6976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10860:25173_1:N:0:CAGATC Contig350492 135 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8822:25322_1:N:0:CAGATC Contig59612 5199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2555:25656_1:N:0:CAGATC Contig214006 612 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8151:26956_1:N:0:CAGATC Contig621206 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12475:28089_1:N:0:CAGATC Contig332771 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15925:28281_1:N:0:CAGATC Contig666881 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12526:28524_1:N:0:CAGATC Contig297842 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14955:32426_1:N:0:CAGATC Contig287409 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14982:32450_1:N:0:CAGATC Contig287409 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15919:39397_1:N:0:CAGATC Contig242500 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5926:39809_1:N:0:CAGATC Contig32549 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14836:39772_1:N:0:CAGATC Contig422747 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11441:41210_1:N:0:CAGATC Contig282303 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20692:41733_1:N:0:CAGATC Contig253450 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12088:42442_1:N:0:CAGATC Contig2547 23600 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17451:42568_1:N:0:CAGATC Contig447780 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14411:43990_1:N:0:CAGATC Contig1841 24858 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5097:44063_1:N:0:CAGATC Contig52297 3423 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20784:44417_1:N:0:CAGATC Contig339383 110 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16089:44552_1:N:0:CAGATC Contig314022 149 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7400:45756_1:N:0:CAGATC Contig234579 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9136:46199_1:N:0:CAGATC Contig143225 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3560:46279_1:N:0:CAGATC Contig502258 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19473:48063_1:N:0:CAGATC Contig454885 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5451:49149_1:N:0:CAGATC Contig649501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20874:50459_1:N:0:CAGATC Contig104193 3773 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6113:53379_1:N:0:CAGATC Contig326886 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21124:53560_1:N:0:CAGATC Contig543143 207 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15951:54310_1:N:0:CAGATC Contig19224 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2299:54948_1:N:0:CAGATC Contig428079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5321:55428_1:N:0:CAGATC Contig531779 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15185:57212_1:N:0:CAGATC Contig387667 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3620:57410_1:N:0:CAGATC Contig44199 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11560:57525_1:N:0:CAGATC Contig376058 170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12839:59129_1:N:0:CAGATC Contig22900 28602 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20155:60209_1:N:0:CAGATC Contig34260 1271 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9983:61799_1:N:0:CAGATC Contig533827 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20011:62115_1:N:0:CAGATC Contig452425 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2923:62258_1:N:0:CAGATC Contig305045 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5858:65221_1:N:0:CAGATC Contig37569 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11315:66146_1:N:0:CAGATC Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9432:66454_1:N:0:CAGATC Contig56012 31869 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16151:69984_1:N:0:CAGATC Contig51703 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6735:71345_1:N:0:CAGATC Contig417228 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1159:72246_1:N:0:CAGATC Contig127350 1618 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6263:75387_1:N:0:CAGATC Contig188524 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10199:77051_1:N:0:CAGATC Contig240568 112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3551:79650_1:N:0:CAGATC Contig219580 567 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8714:79680_1:N:0:CAGATC Contig669643 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9029:82236_1:N:0:CAGATC Contig576107 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15913:83944_1:N:0:CAGATC Contig275044 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3506:84497_1:N:0:CAGATC Contig60042 4731 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15360:85126_1:N:0:CAGATC Contig246927 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11331:86296_1:N:0:CAGATC Contig77904 2667 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14374:91606_1:N:0:CAGATC Contig392759 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18984:94692_1:N:0:CAGATC Contig185934 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1703:95713_1:N:0:CAGATC Contig561630 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6856:97927_1:N:0:CAGATC Contig149715 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2797:2669_1:N:0:CAGATC Contig548319 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17313:3158_1:N:0:CAGATC Contig67875 8464 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9481:3769_1:N:0:CAGATC Contig659675 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5208:4031_1:N:0:CAGATC Contig14964 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10814:4195_1:N:0:CAGATC Contig695538 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10949:6790_1:N:0:CAGATC Contig146131 1132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2399:9798_1:N:0:CAGATC Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12915:10348_1:N:0:CAGATC Contig263785 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17125:11794_1:N:0:CAGATC Contig219580 566 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11587:12948_1:N:0:CAGATC Contig672743 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20465:13638_1:N:0:CAGATC Contig412205 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3282:13792_1:N:0:CAGATC Contig3564 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12429:15281_1:N:0:CAGATC Contig642634 532 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8182:17327_1:N:0:CAGATC Contig140900 1629 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9821:17631_1:N:0:CAGATC Contig161050 4176 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9753:18039_1:N:0:CAGATC Contig523625 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12960:18214_1:N:0:CAGATC Contig206951 1716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14175:20356_1:N:0:CAGATC Contig217905 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19544:20560_1:N:0:CAGATC Contig76139 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4505:21142_1:N:0:CAGATC Contig27128 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16175:21886_1:N:0:CAGATC Contig690918 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2878:23127_1:N:0:CAGATC Contig54206 1213 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5316:24345_1:N:0:CAGATC Contig483238 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2973:31857_1:N:0:CAGATC Contig365695 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4298:33493_1:N:0:CAGATC Contig481837 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3064:34561_1:N:0:CAGATC Contig512866 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19246:34934_1:N:0:CAGATC Contig660929 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1932:35547_1:N:0:CAGATC Contig453430 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19605:35693_1:N:0:CAGATC Contig649568 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1300:35984_1:N:0:CAGATC Contig156638 13243 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11331:37550_1:N:0:CAGATC Contig630931 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16468:37515_1:N:0:CAGATC Contig691560 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1506:38840_1:N:0:CAGATC Contig203132 730 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21034:39042_1:N:0:CAGATC Contig60814 2615 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2836:39782_1:N:0:CAGATC Contig617225 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7772:41497_1:N:0:CAGATC Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5639:42474_1:N:0:CAGATC Contig449100 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6516:42962_1:N:0:CAGATC Contig71779 14343 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5374:46456_1:N:0:CAGATC Contig594493 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13900:50651_1:N:0:CAGATC Contig262677 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6948:51612_1:N:0:CAGATC Contig27100 19770 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15984:52484_1:N:0:CAGATC Contig54989 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1659:53826_1:N:0:CAGATC Contig173708 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10819:54996_1:N:0:CAGATC Contig124112 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7140:55755_1:N:0:CAGATC Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6306:56081_1:N:0:CAGATC Contig322890 225 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16837:58214_1:N:0:CAGATC Contig34642 26870 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20384:58904_1:N:0:CAGATC Contig306108 180 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2972:59181_1:N:0:CAGATC Contig28855 192 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8855:59945_1:N:0:CAGATC Contig46225 11053 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18751:63309_1:N:0:CAGATC Contig334342 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10843:64929_1:N:0:CAGATC Contig14829 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13012:66874_1:N:0:CAGATC Contig628747 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16110:66889_1:N:0:CAGATC Contig26380 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12242:68973_1:N:0:CAGATC Contig535501 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3620:69331_1:N:0:CAGATC Contig616470 120 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13547:72030_1:N:0:CAGATC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11686:73079_1:N:0:CAGATC Contig598079 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7123:73418_1:N:0:CAGATC Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9418:75276_1:N:0:CAGATC Contig474329 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9795:76800_1:N:0:CAGATC Contig373353 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8249:79136_1:N:0:CAGATC Contig405619 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1826:79795_1:N:0:CAGATC Contig63267 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3974:81945_1:N:0:CAGATC Contig56256 11236 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15276:82545_1:N:0:CAGATC Contig143583 4039 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2260:83634_1:N:0:CAGATC Contig687343 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7896:86350_1:N:0:CAGATC Contig576006 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15379:89895_1:N:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1429:90592_1:N:0:CAGATC Contig211945 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1603:91404_1:N:0:CAGATC Contig37764 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2561:92816_1:N:0:CAGATC Contig394412 414 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11993:93414_1:N:0:AAGATC Contig179806 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9976:97773_1:N:0:CAGATC Contig1975 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15218:97787_1:N:0:CAGATC Contig617279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13458:98566_1:N:0:CAGATC Contig636632 224 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19297:100876_1:N:0:CAGATC Contig690840 3149 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5554:4526_1:N:0:CAGATC Contig599214 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10149:6776_1:N:0:CAGATC Contig611004 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20429:7396_1:N:0:CAGATC Contig1548 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3881:9443_1:N:0:CAGATC Contig331517 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7076:9636_1:N:0:CAGATC Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14997:9506_1:N:0:CAGATC Contig241847 139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9120:9972_1:N:0:CAGATC Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1999:10409_1:N:0:CAGATC Contig407588 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10780:12291_1:N:0:CAGATC Contig15987 6186 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19803:16323_1:N:0:CAGATC Contig441696 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12523:20218_1:N:0:CAGATC Contig268099 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3398:20467_1:N:0:CAGATC Contig489251 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12086:21805_1:N:0:CAGATC Contig292106 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7490:23169_1:N:0:CAGATC Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14867:23165_1:N:0:CAGATC Contig533255 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18925:23237_1:N:0:CAGATC Contig419136 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7808:25469_1:N:0:CAGATC Contig12397 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9703:25591_1:N:0:CAGATC Contig619591 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3296:26097_1:N:0:CAGATC Contig36896 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12779:28720_1:N:0:CAGATC Contig519196 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12351:30124_1:N:0:CAGATC Contig100068 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4743:31269_1:N:0:CAGATC Contig621451 126 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5138:32847_1:N:0:CAGATC Contig214444 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9113:32871_1:N:0:CAGATC Contig234028 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16759:33116_1:N:0:CAGATC Contig289313 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21195:33139_1:N:0:CAGATC Contig235362 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9092:35901_1:N:0:CAGATC Contig390793 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20722:36570_1:N:0:CAGATC Contig440836 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9603:39017_1:N:0:CAGATC Contig403223 205 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14559:39343_1:N:0:CAGATC Contig322052 402 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3491:46539_1:N:0:CAGATC Contig669526 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18467:47238_1:N:0:CAGATC Contig236742 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8838:47509_1:N:0:CAGATC Contig663539 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5582:48953_1:N:0:CAGATC Contig251019 119 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8542:53564_1:N:0:CAGATC Contig55435 13071 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15677:54203_1:N:0:CAGATC Contig406059 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11673:55744_1:N:0:CAGATC Contig210739 834 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4920:57665_1:N:0:CAGATC Contig407304 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9646:58144_1:N:0:CAGATC Contig669243 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15583:59425_1:N:0:CAGATC Contig382162 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6569:59815_1:N:0:CAGATC Contig24308 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17877:62291_1:N:0:CAGATC Contig585172 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20640:63006_1:N:0:CAGATC Contig328878 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10580:63347_1:N:0:CAGATC Contig185737 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12488:63910_1:N:0:CAGATC Contig569102 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19005:65926_1:N:0:CAGATC Contig420390 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2457:67154_1:N:0:CAGATC Contig675500 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5354:67536_1:N:0:CAGATC Contig653339 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5863:67958_1:N:0:CAGATC Contig152197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15836:69685_1:N:0:CAGATC Contig359585 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14002:70675_1:N:0:CAGATC Contig132613 880 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15152:71111_1:N:0:CAGATC Contig291101 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21204:71637_1:N:0:CAGATC Contig306797 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12094:71892_1:N:0:CAGATC Contig500144 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19580:73179_1:N:0:CAGATC Contig590631 241 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18429:73503_1:N:0:CAGATC Contig19315 1502 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9965:74145_1:N:0:CAGATC Contig338919 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1786:76038_1:N:0:CAGATC Contig10294 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19687:77199_1:N:0:CAGATC Contig95264 3029 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20671:79951_1:N:0:CAGATC Contig193874 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5362:81149_1:N:0:CAGATC Contig222597 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14202:81455_1:N:0:CAGATC Contig414732 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7829:82266_1:N:0:CAGATC Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19415:82354_1:N:0:CAGATC Contig201975 947 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19775:83686_1:N:0:CAGATC Contig654002 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:6016:84510_1:N:0:CAGATC Contig375120 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2919:87222_1:N:0:CAGATC Contig71558 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16700:87401_1:N:0:CAGATC Contig414743 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8400:88409_1:N:0:CAGATC Contig33796 23695 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14191:91563_1:N:0:CAGATC Contig675953 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15662:92423_1:N:0:CAGATC Contig298350 123 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5257:94317_1:N:0:CAGATC Contig1548 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14439:94700_1:N:0:CAGATC Contig693137 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10656:98215_1:N:0:CAGATC Contig307018 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20559:100134_1:N:0:CAGATC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13608:100780_1:N:0:CAGATC Contig525565 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2723:4280_1:N:0:CAGATC Contig212609 708 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21177:5794_1:N:0:CAGATC Contig11511 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7075:8774_1:N:0:CAGATC Contig668768 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16796:8781_1:N:0:CAGATC Contig516262 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7308:10738_1:N:0:CAGATC Contig530677 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16512:11139_1:N:0:CAGATC Contig477540 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2588:11637_1:N:0:CAGATC Contig45852 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18776:12083_1:N:0:CAGATC Contig399177 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5990:13357_1:N:0:CAGATC Contig641200 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7482:13351_1:N:0:CAGATC Contig139048 1036 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9159:15240_1:N:0:CAGATC Contig362252 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14469:15121_1:N:0:CAGATC Contig675500 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1183:17020_1:N:0:CAGATC Contig650788 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6595:17971_1:N:0:CAGATC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20154:18544_1:N:0:CAGATC Contig24029 6625 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7303:19099_1:N:0:CAGATC Contig421799 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4265:19549_1:N:0:CAGATC Contig61383 5333 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4894:20238_1:N:0:CAGATC Contig89063 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14060:20056_1:N:0:CAGATC Contig197598 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10344:20901_1:N:0:CAGATC Contig156559 431 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4343:21612_1:N:0:CAGATC Contig108884 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5967:22159_1:N:0:CAGATC Contig568374 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8933:22206_1:N:0:CAGATC Contig67445 2488 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2194:23462_1:N:0:CAGATC Contig343041 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4409:24835_1:N:0:CAGATC Contig12358 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3839:27639_1:N:0:CAGATC Contig389432 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12222:27510_1:N:0:CAGATC Contig239863 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20027:31556_1:N:0:CAGATC Contig655447 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15160:32204_1:N:0:CAGATC Contig523485 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19352:34035_1:N:0:CAGATC Contig169980 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17538:35015_1:N:0:CAGATC Contig195728 954 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7121:37252_1:N:0:CAGATC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11095:37260_1:N:0:CAGATC Contig299699 155 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14099:38727_1:N:0:CAGATC Contig134090 8099 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2977:39037_1:N:0:CAGATC Contig450379 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16956:39629_1:N:0:CAGATC Contig521979 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21115:39724_1:N:0:CAGATC Contig34958 19724 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4827:40283_1:N:0:CAGATC Contig632850 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16814:40605_1:N:0:CAGATC Contig553242 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5093:46432_1:N:0:CAGATC Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11325:47935_1:N:0:CAGATC Contig346121 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8169:52408_1:N:0:CAGATC Contig221717 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12827:52583_1:N:0:CAGATC Contig501661 1130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12867:52583_1:N:0:CAGATC Contig501661 1130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16246:52740_1:N:0:CAGATC Contig101742 9014 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14808:53388_1:N:0:CAGATC Contig222027 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4005:53538_1:N:0:CAGATC Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4009:53976_1:N:0:CAGATC Contig60066 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7833:54747_1:N:0:CAGATC Contig23489 9537 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2406:56341_1:N:0:CAGATC Contig54039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2852:56494_1:N:0:CAGATC Contig310261 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20879:56409_1:N:0:CAGATC Contig121994 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21134:57634_1:N:0:CAGATC Contig546759 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2516:60427_1:N:0:CAGATC Contig403669 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14932:60467_1:N:0:CAGATC Contig406952 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7689:60651_1:N:0:CAGATC Contig666477 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1981:65076_1:N:0:CAGATC Contig641822 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16797:65605_1:N:0:CAGATC Contig394412 414 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13597:66097_1:N:0:CAGATC Contig52263 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10482:67608_1:N:0:CAGATC Contig438364 1030 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14370:71248_1:N:0:CAGATC Contig435120 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1185:71698_1:N:0:CAGATC Contig460360 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7817:71574_1:N:0:CAGATC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13334:71789_1:N:0:CAGATC Contig249462 330 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4133:73053_1:N:0:CAGATC Contig77471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4295:73237_1:N:0:CAGATC Contig380138 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17183:75466_1:N:0:CAGATC Contig118323 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12495:75835_1:N:0:CAGATC Contig179029 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12260:75895_1:N:0:CAGATC Contig88236 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9197:76014_1:N:0:CAGATC Contig566164 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17928:76334_1:N:0:CAGATC Contig354921 415 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6692:80230_1:N:0:CAGATC Contig185638 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9863:81270_1:N:0:CAGATC Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5894:81675_1:N:0:CAGATC Contig35367 9472 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13318:82990_1:N:0:CAGATC Contig671633 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7069:83699_1:N:0:CAGATC Contig545560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18709:85293_1:N:0:CAGATC Contig694375 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20105:86153_1:N:0:CAGATC Contig31871 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7408:87331_1:N:0:CAGATC Contig502543 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4773:88428_1:N:0:CAGATC Contig231616 170 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6455:90897_1:N:0:CAGATC Contig459966 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6311:94529_1:N:0:CAGATC Contig100873 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1797:96052_1:N:0:CAGATC Contig79524 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4400:98877_1:N:0:CAGATC Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12192:99053_1:N:0:CAGATC Contig634036 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9477:2313_1:N:0:CAGATC Contig166828 722 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9493:3271_1:N:0:CAGATC Contig674379 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9567:4119_1:N:0:CAGATC Contig83075 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15174:4665_1:N:0:CAGATC Contig417066 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19881:5271_1:N:0:CAGATC Contig16985 786 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2727:7493_1:N:0:CAGATC Contig639957 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5832:8157_1:N:0:CAGATC Contig118490 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7254:9205_1:N:0:CAGATC Contig176411 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21084:9347_1:N:0:CAGATC Contig231401 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13076:11191_1:N:0:CAGATC Contig54039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12470:11687_1:N:0:CAGATC Contig45892 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3882:12410_1:N:0:CAGATC Contig284014 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18906:12822_1:N:0:CAGATC Contig584238 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16896:14115_1:N:0:CAGATC Contig249589 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8975:15369_1:N:0:CAGATC Contig247536 374 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7297:15719_1:N:0:CAGATC Contig76256 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17353:17305_1:N:0:CAGATC Contig270296 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15356:20123_1:N:0:CAGATC Contig317724 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19107:20665_1:N:0:CAGATC Contig597988 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2569:23657_1:N:0:CAGATC Contig52748 1590 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20380:24016_1:N:0:CAGATC Contig202506 795 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17814:25193_1:N:0:CAGATC Contig63273 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1207:25918_1:N:0:CAGACC Contig525282 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10904:27386_1:N:0:CAGATC Contig614411 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10211:29701_1:N:0:CAGATC Contig515784 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16540:29537_1:N:0:CAGATC Contig278505 166 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6687:30655_1:N:0:CAGATC Contig455973 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10719:31142_1:N:0:CAGATC Contig691738 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7518:32708_1:N:0:CAGATC Contig58012 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11759:33477_1:N:0:CAGATC Contig122243 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13918:33571_1:N:0:CAGATC Contig292856 135 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20722:35333_1:N:0:CAGATC Contig427079 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2838:36070_1:N:0:CAGATC Contig467114 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20851:36213_1:N:0:CAGATC Contig656397 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4489:36799_1:N:0:CAGATC Contig251909 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10023:36829_1:N:0:CAGATC Contig688016 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16345:37640_1:N:0:CAGATC Contig63016 3056 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17249:41327_1:N:0:CAGATC Contig341117 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2190:42783_1:N:0:CAGATC Contig310200 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5410:43175_1:N:0:CAGATC Contig16985 787 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10529:47704_1:N:0:CAGATC Contig454423 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13891:48093_1:N:0:CAGATC Contig49158 9940 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13927:48116_1:N:0:CAGATC Contig49158 9940 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17428:50331_1:N:0:CAGATC Contig403352 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16680:51399_1:N:0:CAGATC Contig696283 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2388:52352_1:N:0:CAGATC Contig116905 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8322:52655_1:N:0:CAGATC Contig284670 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21061:52586_1:N:0:CAGATC Contig66311 4540 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3353:54368_1:N:0:CAGATC Contig317992 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16601:55927_1:N:0:CAGATC Contig14110 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3737:58495_1:N:0:CAGATC Contig460818 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6294:59123_1:N:0:CAGATC Contig124772 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5025:59970_1:N:0:CAGATC Contig413553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16129:60047_1:N:0:CAGATC Contig375488 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14497:62301_1:N:0:CAGATC Contig671478 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16636:66832_1:N:0:CAGATC Contig637906 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6166:67660_1:N:0:CAGATC Contig97039 2734 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20399:69056_1:N:0:CAGATC Contig692941 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13911:70614_1:N:0:CAGATC Contig255907 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9361:71999_1:N:0:CAGATC Contig211717 3813 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7231:72861_1:N:0:CAGATC Contig182529 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1219:77169_1:N:0:CAGATC Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7248:79408_1:N:0:CAGATC Contig409200 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5175:80609_1:N:0:CAGATC Contig196877 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5461:83466_1:N:0:CAGATC Contig19163 16953 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8219:84235_1:N:0:CAGATC Contig89845 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6325:84898_1:N:0:CAGATC Contig249933 1866 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18389:89405_1:N:0:CAGATC Contig514909 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10154:89678_1:N:0:CAGATC Contig64785 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2929:91408_1:N:0:CAGATC Contig318173 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6078:95642_1:N:0:CAGATC Contig13557 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1620:96139_1:N:0:CAGATC Contig39721 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19854:96322_1:N:0:CAGATC Contig320423 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6520:97704_1:N:0:CAGATC Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6744:97993_1:N:0:CAGATC Contig382532 145 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17059:98043_1:N:0:CAGATC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16332:99780_1:N:0:CAGATC Contig219529 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18615:101091_1:N:0:CAGATC Contig63990 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7621:2348_1:N:0:CAGATC Contig143774 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3889:2790_1:N:0:CAGATC Contig361333 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18664:3050_1:N:0:CAGATC Contig214013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16397:4609_1:N:0:CAGATC Contig469363 120 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10036:4948_1:N:0:CAGATC Contig622844 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11171:5413_1:N:0:CAGATC Contig226780 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19765:5885_1:N:0:CAGATC Contig586352 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17132:7652_1:N:0:CAGATC Contig393342 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13896:8418_1:N:0:CAGATC Contig268227 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10540:11802_1:N:0:CAGATC Contig318202 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10815:12600_1:N:0:CAGATC Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12348:14498_1:N:0:CAGATC Contig688403 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20627:14758_1:N:0:CAGATC Contig158704 1089 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3352:15413_1:N:0:CAGATC Contig467756 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7797:15482_1:N:0:CAGATC Contig448129 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12286:16097_1:N:0:CAGATC Contig100388 1700 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6597:16585_1:N:0:CAGATC Contig328949 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7506:16733_1:N:0:CAGATC Contig576468 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18412:17024_1:N:0:CAGATC Contig187643 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4116:18058_1:N:0:CAGATC Contig257649 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11541:19708_1:N:0:CAGATC Contig533954 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9028:20338_1:N:0:CAGATC Contig491016 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19807:21597_1:N:0:CAGATC Contig233955 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3749:23973_1:N:0:CAGATC Contig249361 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14874:23952_1:N:0:CAGATC Contig207323 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6396:26752_1:N:0:CAGATC Contig281033 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16403:27016_1:N:0:CAGATC Contig406304 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13319:27295_1:N:0:CAGATC Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12892:29665_1:N:0:CAGATC Contig32293 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3118:30080_1:N:0:CAGATC Contig614071 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17922:31484_1:N:0:CAGATC Contig182247 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3840:31790_1:N:0:CAGATC Contig313125 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16970:33717_1:N:0:CAGATC Contig231756 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9334:35063_1:N:0:CAGATC Contig300296 927 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21135:36114_1:N:0:CAGATC Contig94971 2660 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19437:39120_1:N:0:CAGATC Contig144926 860 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3053:39680_1:N:0:CAGATC Contig471716 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14207:39920_1:N:0:CAGATC Contig13722 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1793:41413_1:N:0:CAGATC Contig502554 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4754:41621_1:N:0:CAGATC Contig158022 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18728:42009_1:N:0:CAGATC Contig134568 1030 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1234:42473_1:N:0:CAGATC Contig322890 227 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18417:43436_1:N:0:CAGATC Contig505029 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17221:45599_1:N:0:CAGATC Contig501279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9391:46120_1:N:0:CAGATC Contig261864 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9942:46046_1:N:0:CAGATC Contig287654 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4756:47531_1:N:0:CAGATC Contig679606 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2800:49109_1:N:0:CAGATC Contig454366 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5360:49507_1:N:0:CAGATC Contig388593 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10139:49997_1:N:0:CAGATC Contig12516 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19608:50191_1:N:0:CAGATC Contig60042 4732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4127:53387_1:N:0:CAGATC Contig494366 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9190:54545_1:N:0:CAGATC Contig414554 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10245:54836_1:N:0:CAGATC Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:21286:57103_1:N:0:CAGATC Contig560 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2950:58115_1:N:0:CAGATC Contig90422 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15763:59281_1:N:0:CAGATC Contig515433 153 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2828:60455_1:N:0:CAGATC Contig2546 35776 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6031:62180_1:N:0:CAGATC Contig542746 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8028:63170_1:N:0:CAGATC Contig399815 144 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18412:63228_1:N:0:CAGATC Contig566930 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1441:65538_1:N:0:CAGATC Contig526369 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6143:66951_1:N:0:CAGATC Contig306797 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7956:67001_1:N:0:CAGATC Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6195:68646_1:N:0:CAGATC Contig607675 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12153:68601_1:N:0:CAGATC Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4649:69172_1:N:0:CAGATC Contig533827 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5915:69512_1:N:0:CAGATC Contig601866 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7479:69696_1:N:0:CAGATC Contig393612 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14523:69789_1:N:0:CAGATC Contig29585 1024 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16888:71152_1:N:0:CAGATC Contig20710 16732 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7483:71377_1:N:0:CAGATC Contig536932 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4452:72565_1:N:0:CAGATC Contig191320 988 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17689:73024_1:N:0:CAGATC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9922:73284_1:N:0:CAGATC Contig200683 8082 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10085:74480_1:N:0:CAGATC Contig454135 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3865:74571_1:N:0:CAGATC Contig24438 33136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7068:75475_1:N:0:CAGATC Contig174296 1649 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5767:76144_1:N:0:CAGATC Contig26 46776 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16355:77463_1:N:0:CAGATC Contig363124 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17144:78322_1:N:0:CAGATC Contig303734 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1187:78582_1:N:0:CAGATC Contig659091 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10186:79665_1:N:0:CAGATC Contig19140 10460 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18579:79792_1:N:0:CAGATC Contig688943 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4345:81462_1:N:0:CAGATC Contig271584 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11085:82327_1:N:0:CAGATC Contig564631 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17770:85547_1:N:0:CAGATC Contig15444 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4143:86851_1:N:0:CAGATC Contig33247 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6277:87012_1:N:0:CAGATC Contig55720 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13684:89573_1:N:0:CAGATC Contig420416 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13155:93085_1:N:0:CAGATC Contig264801 338 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15339:93956_1:N:0:CAGATC Contig371485 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7763:97080_1:N:0:CAGATC Contig17279 988 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11091:98466_1:N:0:CAGATC Contig112006 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2372:100947_1:N:0:CAGATC Contig59889 13668 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18599:100815_1:N:0:CAGATC Contig285587 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1815:2291_1:N:0:CAGATC Contig623559 161 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16782:3363_1:N:0:CAGATC Contig287247 232 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20434:3724_1:N:0:CAGATC Contig426237 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3954:8300_1:N:0:CAGATC Contig292740 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6663:8936_1:N:0:CAGATC Contig522250 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3591:13657_1:N:0:CAGATC Contig127952 794 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6953:13885_1:N:0:CAGATC Contig473294 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2760:15321_1:N:0:CAGATC Contig459639 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6470:15268_1:N:0:CAGATC Contig274391 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16675:16458_1:N:0:CAGATC Contig109778 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19385:19677_1:N:0:CAGATC Contig538134 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12467:20029_1:N:0:CAGATC Contig26708 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13731:21043_1:N:0:CAGATC Contig426956 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6896:21543_1:N:0:CAGATC Contig287972 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16908:21641_1:N:0:CAGATC Contig94742 8680 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13111:23043_1:N:0:CAGATC Contig78826 2073 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3436:23304_1:N:0:CAGATC Contig386057 118 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3040:23939_1:N:0:CAGATC Contig588043 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3248:25478_1:N:0:CAGATC Contig511289 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9324:29669_1:N:0:CAGATC Contig516746 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15562:30167_1:N:0:CAGATC Contig569137 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1119:31940_1:N:0:CAGATC Contig442713 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6989:32007_1:N:0:CAGATC Contig89443 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15593:33722_1:N:0:CAGATC Contig397146 363 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9641:34267_1:N:0:CAGATC Contig55096 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6872:34860_1:N:0:CAGATC Contig454844 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3322:35041_1:N:0:CAGATC Contig432837 2173 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6954:35837_1:N:0:CAGATC Contig205168 962 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17614:35935_1:N:0:CAGATC Contig493721 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6421:38132_1:N:0:CAGATC Contig627279 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4259:39588_1:N:0:CAGATC Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11019:40141_1:N:0:CAGATC Contig598590 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12780:42521_1:N:0:CAGATC Contig203603 894 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12683:42947_1:N:0:CAGATC Contig52471 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12543:43636_1:N:0:CAGATC Contig602178 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3415:45834_1:N:0:CAGATC Contig370910 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17120:46530_1:N:0:CAGATC Contig277644 149 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4152:47921_1:N:0:CAGATC Contig279673 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5985:49051_1:N:0:CAGATC Contig394389 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16261:51446_1:N:0:CAGATC Contig118289 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13071:51805_1:N:0:CAGATA Contig256548 132 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19650:53069_1:N:0:CAGATC Contig271890 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20805:53234_1:N:0:CAGATC Contig691360 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1624:53934_1:N:0:CAGATC Contig260485 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2438:54717_1:N:0:CAGATC Contig202265 1402 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15747:55795_1:N:0:CAGATC Contig158385 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10576:56171_1:N:0:CAGATC Contig380138 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7238:59202_1:N:0:CAGATC Contig381776 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5037:60802_1:N:0:CAGATC Contig75414 2891 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5986:62177_1:N:0:CAGATC Contig458308 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13828:63623_1:N:0:CAGATC Contig11516 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10038:64754_1:N:0:CAGATC Contig143774 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20810:70784_1:N:0:CAGATC Contig376109 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2951:74785_1:N:0:CAGATC Contig194664 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18782:75552_1:N:0:CAGATC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12967:76904_1:N:0:CAGATC Contig177544 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15831:76958_1:N:0:CAGATC Contig109985 1715 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16064:79095_1:N:0:CAGATC Contig240979 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4081:81318_1:N:0:CAGATC Contig528998 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18684:83905_1:N:0:CAGATC Contig51480 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13411:84523_1:N:0:CAGATC Contig386531 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18715:88652_1:N:0:CAGATC Contig62458 22412 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9668:89284_1:N:0:CAGATC Contig198212 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:21123:92741_1:N:0:CAGATC Contig74147 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5365:93590_1:N:0:CAGATC Contig425444 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7963:94090_1:N:0:CAGATC Contig267721 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5570:95725_1:N:0:CAGATC Contig104193 3773 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15038:97170_1:N:0:CAGATC Contig313428 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16638:97121_1:N:0:CAGATC Contig61552 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5931:98132_1:N:0:CAGATC Contig119371 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1266:98986_1:N:0:CAGATC Contig526224 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2419:100032_1:N:0:CAGATC Contig557664 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9274:100532_1:N:0:CAGATC Contig199793 399 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10340:4853_1:N:0:CAGATC Contig607197 112 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20069:5879_1:N:0:CAGATC Contig158513 734 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8891:7908_1:N:0:CAGATC Contig450133 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10176:9988_1:N:0:CAGATC Contig29305 42964 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11969:12892_1:N:0:CAGATC Contig36800 32946 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18575:13881_1:N:0:CAGATC Contig171856 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9571:14067_1:N:0:CAGATC Contig129490 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7434:15986_1:N:0:CAGATC Contig500200 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6106:17654_1:N:0:CAGATC Contig541863 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15881:17985_1:N:0:CAGATC Contig59947 3809 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4374:19452_1:N:0:CAGATC Contig660461 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1665:21793_1:N:0:CAGATC Contig191906 812 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13120:22161_1:N:0:CAGATC Contig450042 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18725:22664_1:N:0:CAGATC Contig585458 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5148:23126_1:N:0:CAGATC Contig518735 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16004:24296_1:N:0:CAGATC Contig379766 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12713:24739_1:N:0:CAGATC Contig40459 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9659:25485_1:N:0:CAGATC Contig2627 4914 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10364:26646_1:N:0:CAGATC Contig116847 799 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3323:27511_1:N:0:CAGATC Contig181870 806 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17261:28110_1:N:0:CAGATC Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6556:29774_1:N:0:CAGATC Contig309213 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9113:30542_1:N:0:CAGATC Contig365270 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12608:30538_1:N:0:CAGATC Contig234312 138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20590:33746_1:N:0:CAGATC Contig285015 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17949:33778_1:N:0:CAGATC Contig270296 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18199:33771_1:N:0:CAGATC Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9392:35213_1:N:0:CAGATC Contig210378 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6529:35708_1:N:0:CAGATC Contig140093 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16894:37003_1:N:0:CAGATC Contig676640 299 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6372:38319_1:N:0:CAGATC Contig612874 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7482:38758_1:N:0:CAGATC Contig322366 1336 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21252:38844_1:N:0:CAGATC Contig339383 110 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18060:40886_1:N:0:CAGATC Contig308706 264 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4498:44209_1:N:0:CAGATC Contig358523 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5375:45102_1:N:0:CAGATC Contig279368 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8599:45699_1:N:0:CAGATC Contig161646 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4126:47107_1:N:0:CAGATC Contig304675 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14002:47679_1:N:0:CAGATC Contig107806 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4734:48608_1:N:0:CAGATC Contig622946 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9090:49268_1:N:0:CAGATC Contig418309 229 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6087:51448_1:N:0:CAGATC Contig644742 177 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12361:51628_1:N:0:CAGATC Contig650526 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10185:52956_1:N:0:CAGATC Contig3564 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19111:53025_1:N:0:CAGATC Contig9393 3227 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7297:55437_1:N:0:CAGATC Contig513860 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11816:55324_1:N:0:AAGATC Contig486225 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15752:56459_1:N:0:CAGATC Contig38356 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1174:56979_1:N:0:CAGATC Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1289:56857_1:N:0:CAGATC Contig14122 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4054:58387_1:N:0:CAGATC Contig214773 692 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3368:58756_1:N:0:CAGATC Contig485297 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16907:58855_1:N:0:CAGATC Contig12444 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7747:59550_1:N:0:CAGATC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13980:62752_1:N:0:CAGATC Contig421427 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2373:64821_1:N:0:CAGATC Contig671433 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19310:64817_1:N:0:CAGATC Contig298402 192 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2372:66070_1:N:0:CAGATC Contig302307 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16542:66422_1:N:0:CAGATC Contig314583 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2944:67859_1:N:0:CAGATC Contig553789 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15655:68313_1:N:0:CAGATC Contig560849 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11576:69326_1:N:0:CAGATC Contig166282 710 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21041:69644_1:N:0:CAGATC Contig199610 756 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3492:69842_1:N:0:CAGATC Contig52506 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1853:71097_1:N:0:CAGATC Contig4954 3350 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11924:73381_1:N:0:CAGATC Contig160526 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11716:73869_1:N:0:CAGATC Contig218481 19424 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9632:76014_1:N:0:CAGATC Contig525964 153 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2875:78388_1:N:0:CAGATC Contig305829 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3012:78517_1:N:0:CAGATC Contig56604 8881 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19756:78602_1:N:0:CAGATC Contig94182 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4357:78987_1:N:0:CAGATC Contig182431 2326 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16231:82731_1:N:0:CAGATC Contig388838 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12271:82828_1:N:0:CAGATC Contig159001 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15498:84403_1:N:0:CAGATC Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6506:86788_1:N:0:CAGATC Contig584062 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1377:87371_1:N:0:CAGATC Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15951:88110_1:N:0:CAGATC Contig131550 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12900:88631_1:N:0:CAGATC Contig612800 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17625:89170_1:N:0:CAGATC Contig163100 143 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19964:90306_1:N:0:CAGATC Contig384516 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5455:90887_1:N:0:CAGATC Contig239687 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5296:91722_1:N:0:CAGATC Contig424115 199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8507:92662_1:N:0:CAGATC Contig362708 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:21295:92581_1:N:0:CAGATC Contig62412 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:13842:93945_1:N:0:CAGATC Contig32693 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15163:94077_1:N:0:CAGATC Contig515754 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8232:94313_1:N:0:AAGATC Contig627510 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1161:94706_1:N:0:CAGATC Contig198821 453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3359:96244_1:N:0:CAGATC Contig183601 897 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14929:96083_1:N:0:CAGATC Contig505072 123 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11417:97836_1:N:0:CAGATC Contig117986 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:15312:99802_1:N:0:CAGATC Contig142429 5614 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20065:99808_1:N:0:CAGATC Contig403003 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:4097:100088_1:N:0:CAGATC Contig179343 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6830:2968_1:N:0:CAGATC Contig350219 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6841:3906_1:N:0:CAGATT Contig289669 367 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18039:4143_1:N:0:CAGATC Contig50993 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11812:5383_1:N:0:CAGATC Contig311656 513 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20456:8093_1:N:0:CAGATC Contig22790 42527 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3040:8429_1:N:0:CAGATC Contig247118 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1112:9378_1:N:0:CAGATC Contig449107 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15491:9758_1:N:0:CAGATC Contig88480 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18742:10190_1:N:0:CAGATC Contig270141 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7694:12534_1:N:0:CAGATC Contig414714 382 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4894:15413_1:N:0:CAGATC Contig49054 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7070:16032_1:N:0:CAGATC Contig544071 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12217:16146_1:N:0:CAGATC Contig393930 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5036:16736_1:N:0:CAGATC Contig553176 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6491:17000_1:N:0:CAGATC Contig22900 28604 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14928:18650_1:N:0:CAGATC Contig285722 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15558:18603_1:N:0:CAGATC Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8234:18940_1:N:0:CAGATC Contig99728 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16633:18872_1:N:0:CAGATC Contig489787 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11489:19559_1:N:0:CAGATC Contig302736 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15435:20901_1:N:0:CAGATC Contig60735 11993 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7348:21369_1:N:0:CAGATC Contig50928 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1803:24527_1:N:0:CAGATC Contig4802 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6449:24928_1:N:0:CAGATC Contig290 36267 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8846:25707_1:N:0:CAGATC Contig358024 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9244:26015_1:N:0:CAGATC Contig372285 622 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3572:26626_1:N:0:CAGATC Contig48874 142 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14686:26587_1:N:0:CAGATC Contig65414 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6595:26951_1:N:0:CAGATC Contig329999 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15365:28183_1:N:0:CAGATC Contig629035 119 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9762:29257_1:N:0:CAGATC Contig33618 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6994:30088_1:N:0:CAGATC Contig65273 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2079:30449_1:N:0:CAGATC Contig309400 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9602:30281_1:N:0:CAGATC Contig204568 584 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7472:31175_1:N:0:CAGATC Contig136171 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17816:31107_1:N:0:CAGATC Contig543512 111 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13669:33018_1:N:0:CAGATC Contig169163 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2428:35928_1:N:0:CAGATC Contig443448 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10396:36704_1:N:0:CAGATC Contig689481 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3466:39100_1:N:0:CAGATC Contig36851 1100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9192:39060_1:N:0:CAGATC Contig99727 1982 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16869:40324_1:N:0:CAGATC Contig253455 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15056:41790_1:N:0:CAGATC Contig644585 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8381:42239_1:N:0:CAGATC Contig100960 9393 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19022:42077_1:N:0:CAGATC Contig22932 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16099:42330_1:N:0:CAGATC Contig550703 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20599:42351_1:N:0:CAGATC Contig140341 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8017:42763_1:N:0:CAGATC Contig657935 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8009:42799_1:N:0:CAGATC Contig437990 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:21234:44336_1:N:0:CAGATC Contig58714 5612 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:5863:44553_1:N:0:CAGATC Contig26636 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16368:45750_1:N:0:CAGATC Contig603912 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:15399:46228_1:N:0:CAGATC Contig227291 126 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2068:47593_1:N:0:CAGATC Contig348010 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14440:47615_1:N:0:CAGATC Contig635185 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12298:48145_1:N:0:CAGATC Contig237165 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2887:50415_1:N:0:CAGATC Contig685495 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3120:50845_1:N:0:CAGATC Contig92483 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7864:51044_1:N:0:CAGATC Contig2335 8526 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7590:51562_1:N:0:CAGATC Contig530378 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8494:54155_1:N:0:CAGATC Contig17147 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:21084:55081_1:N:0:CAGATC Contig155759 727 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8065:55686_1:N:0:CAGATC Contig158704 1089 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3443:56100_1:N:0:CAGATC Contig457 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:2338:56521_1:N:0:CAGATC Contig181832 470 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6040:56817_1:N:0:CAGATC Contig177395 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19407:57066_1:N:0:CAGATC Contig53330 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6088:57656_1:N:0:CAGATC Contig1221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11943:59912_1:N:0:CAGATC Contig86960 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20740:66059_1:N:0:CAGATC Contig544405 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3993:67827_1:N:0:CAGATC Contig101697 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3283:68037_1:N:0:CAGATC Contig567272 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10845:68404_1:N:0:CAGATC Contig88172 2575 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:11007:70290_1:N:0:CAGATC Contig657344 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:3059:71317_1:N:0:CAGATC Contig607338 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6351:71295_1:N:0:CAGATC Contig548402 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8948:73873_1:N:0:CAGATC Contig462227 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:9131:73803_1:N:0:CAGATC Contig387502 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17653:74578_1:N:0:CAGATC Contig113399 883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7127:76826_1:N:0:CAGATC Contig225448 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1155:78829_1:N:0:CAGATC Contig360304 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10124:80801_1:N:0:CAGATC Contig611463 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:14434:81411_1:N:0:CAGATC Contig371693 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:10560:81778_1:N:0:CAGATC Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:16521:82639_1:N:0:CAGATC Contig193874 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1932:83303_1:N:0:CAGATC Contig585966 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:20235:83274_1:N:0:CAGATC Contig133326 1997 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:4716:85015_1:N:0:CAGATC Contig6988 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:1543:85562_1:N:0:CAGATC Contig398696 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19277:88021_1:N:0:CAGATC Contig266248 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:8035:89126_1:N:0:CAGATC Contig355919 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:13400:89419_1:N:0:CAGATC Contig199840 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19469:90135_1:N:0:CAGATC Contig92902 1698 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:17400:91358_1:N:0:CAGATC Contig155164 545 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7944:91629_1:N:0:CAGATC Contig611377 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:7573:91754_1:N:0:CAGATC Contig194115 718 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19517:91857_1:N:0:CAGATC Contig348416 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:6322:92364_1:N:0:CAGATC Contig580994 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:19061:92786_1:N:0:CAGATC Contig288215 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:12434:94481_1:N:0:CAGATC Contig577378 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1109:18358:100861_1:N:0:CAGATC Contig280315 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:15945:7078_1:N:0:CAGATC Contig279416 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:5104:8612_1:N:0:CAGATC Contig122733 778 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:5108:8649_1:N:0:CAGATC Contig122733 778 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1488:10260_1:N:0:CAGATC Contig471305 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:9381:10305_1:N:0:CAGATC Contig163869 906 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3022:12068_1:N:0:CAGATC Contig429259 152 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:6168:16576_1:N:0:CAGATC Contig464445 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:10946:18259_1:N:0:CAGATC Contig149320 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20608:18486_1:N:0:CAGATC Contig22733 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19958:19620_1:N:0:CAGATC Contig635185 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:20364:27015_1:N:0:CAGATC Contig14139 580 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3359:28386_1:N:0:CAGATC Contig129461 2287 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19844:28747_1:N:0:CAGATC Contig83491 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:13326:34693_1:N:0:CAGATC Contig8416 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:15056:34865_1:N:0:CAGATC Contig362504 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:11198:36072_1:N:0:CAGATC Contig306797 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19848:37291_1:N:0:CAGATC Contig58012 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:10058:37535_1:N:0:CAGATC Contig342029 1007 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7960:37793_1:N:0:CAGATC Contig668942 116 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:16305:39929_1:N:0:CTGATC Contig569410 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:17364:40887_1:N:0:CAGATC Contig658316 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:9504:43061_1:N:0:CAGATC Contig584047 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:18176:43058_1:N:0:CAGATC Contig126469 3534 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3128:43888_1:N:0:CAGATC Contig410242 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:4944:44496_1:N:0:CAGATC Contig129550 1817 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:11481:44456_1:N:0:CAGATC Contig641882 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:17787:44579_1:N:0:CAGATC Contig194567 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:5624:45842_1:N:0:CAGATC Contig631822 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:3652:46437_1:N:0:CAGATC Contig121089 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:9968:46402_1:N:0:CAGATC Contig347240 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1295:47082_1:N:0:CAGATC Contig298952 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:19360:49684_1:N:0:CAGATC Contig315535 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:1322:51155_1:N:0:CAGATC Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:13551:51263_1:N:0:CAGATC Contig372251 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1110:7476:51979_1:N:0:CAGATC Contig499153 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 789729 (78.97%) aligned 0 times 109390 (10.94%) aligned exactly 1 time 100881 (10.09%) aligned >1 times 21.03% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 790654 (79.07%) aligned 0 times 109163 (10.92%) aligned exactly 1 time 100183 (10.02%) aligned >1 times 20.93% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 363505 (36.35%) aligned 0 times 217143 (21.71%) aligned exactly 1 time 419352 (41.94%) aligned >1 times 63.65% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 364317 (36.43%) aligned 0 times 217675 (21.77%) aligned exactly 1 time 418008 (41.80%) aligned >1 times 63.57% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 7_CAGATC_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 7_CAGATC_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 399253 Mapping efficiency: 39.9% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2240351 Total methylated C's in CpG context: 85343 Total methylated C's in CHG context: 5305 Total methylated C's in CHH context: 115204 Total methylated C's in Unknown context: 41 Total unmethylated C's in CpG context: 216476 Total unmethylated C's in CHG context: 407466 Total unmethylated C's in CHH context: 1410557 Total unmethylated C's in Unknown context: 341 C methylated in CpG context: 28.3% C methylated in CHG context: 1.3% C methylated in CHH context: 7.6% C methylated in Unknown context (CN or CHN): 10.7% Bismark completed in 0d 2h 32m 28s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/8_ACTTGA_L001_R1_001_trimmed.fq.gz Writing a C -> T converted version of the input file 8_ACTTGA_L001_R1_001_trimmed.fq.gz to 8_ACTTGA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file 8_ACTTGA_L001_R1_001_trimmed.fq.gz to 8_ACTTGA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file 8_ACTTGA_L001_R1_001_trimmed.fq.gz (1000001 sequences in total) Input files are 8_ACTTGA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 8_ACTTGA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from 8_ACTTGA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1195:2170_1:N:0:ACTTGA 0 Contig21564_CT_converted 3496 1 30M * 0 0 ATTTGTAGTTTTTTATTGGTAATGGTGATG HHHJJFFHIHJJJJGJJIICCEIII?FFHI AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:30 YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from 8_ACTTGA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1195:2170_1:N:0:ACTTGA 16 Contig1080_GA_converted 13756 1 30M * 0 0 CATCACCATTACCAATAAAAAACTACAAAT IHFF?IIIECCIIJJGJJJJHIHFFJJHHH AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:30 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from 8_ACTTGA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1195:2170_1:N:0:ACTTGA 4 * 0 0 * * 0 0 ATTTATAATTTTTTATTAATAATAATAATA HHHJJFFHIHJJJJGJJIICCEIII?FFHI YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from 8_ACTTGA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-D00743:54:C8MOMACXX:1:1101:1195:2170_1:N:0:ACTTGA 4 * 0 0 * * 0 0 ATTTATAATTTTTTATTAATAATAATAATA HHHJJFFHIHJJJJGJJIICCEIII?FFHI YT:Z:UU >>> Writing bisulfite mapping results to 8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/8_ACTTGA_L001_R1_001_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11046:2219_1:N:0:ACTTGA Contig13204 94 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15912:2994_1:N:0:ACTTGA Contig60519 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14923:3437_1:N:0:ACTTGA Contig252861 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5382:5215_1:N:0:ACTTGA Contig369739 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7853:5386_1:N:0:ACTTGA Contig427273 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20064:5664_1:N:0:ACTTGA Contig675953 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13711:7107_1:N:0:ACTTGA Contig500182 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16110:8041_1:N:0:ACTTGA Contig273708 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4049:8514_1:N:0:ACTTGA Contig309400 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11403:11448_1:N:0:ACTTGA Contig645250 115 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7307:14500_1:N:0:ACTTGA Contig346148 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2077:14868_1:N:0:ACTTGA Contig260431 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7757:15393_1:N:0:ACTTGA Contig489494 98 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4927:15839_1:N:0:ACTTGA Contig297416 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4951:16978_1:N:0:ACTTGA Contig109450 6129 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10839:16881_1:N:0:ACTTGA Contig217325 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6702:17868_1:N:0:ACTTGA Contig361366 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10716:20520_1:N:0:ACTTGA Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7507:21103_1:N:0:ACTTGA Contig335108 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14347:22130_1:N:0:ACTTGA Contig395184 113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10434:22349_1:N:0:ACTTGA Contig38054 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19749:22871_1:N:0:ACTTGA Contig695158 209 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6927:23766_1:N:0:ACTTGA Contig642621 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19493:24857_1:N:0:ACTTGA Contig67905 4362 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6261:25174_1:N:0:ACTTGA Contig508285 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3912:26940_1:N:0:ACTTGA Contig67855 5865 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18440:26887_1:N:0:ACTTGA Contig468750 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12141:27149_1:N:0:ACTTGA Contig271370 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15093:27410_1:N:0:ACTTGA Contig287273 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20549:27389_1:N:0:ACTTGA Contig464788 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17490:27654_1:N:0:ACTTGA Contig598672 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13079:29081_1:N:0:ACTTGA Contig506272 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16395:29490_1:N:0:ACTTGA Contig474432 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5593:29545_1:N:0:ACTTGA Contig337663 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6167:29644_1:N:0:ACTTGA Contig400928 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17247:31985_1:N:0:ACTTGA Contig57450 4548 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4822:32074_1:N:0:ACTTGA Contig285402 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19810:33875_1:N:0:ACTTGA Contig635580 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19758:35361_1:N:0:ACTTGA Contig176064 507 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17993:37213_1:N:0:ACTTGA Contig143583 4038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19930:38058_1:N:0:ACTTGA Contig481475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2755:39479_1:N:0:ACTTGA Contig665327 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9224:39360_1:N:0:ACTTGA Contig177396 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16060:39891_1:N:0:ACTTGA Contig407555 174 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14795:41990_1:N:0:ACTTGA Contig12865 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17491:42340_1:N:0:ACTTGA Contig122243 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9899:43317_1:N:0:ACTTGA Contig284248 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12611:43425_1:N:0:ACTTGA Contig206975 348 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4316:43782_1:N:0:ACTTGA Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16399:45941_1:N:0:ACTTGA Contig76605 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15136:46276_1:N:0:ACTTGA Contig635923 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16926:46315_1:N:0:ACTTGA Contig664243 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13328:48310_1:N:0:ACTTGA Contig209389 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12667:48585_1:N:0:ACTTGA Contig352929 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8414:49141_1:N:0:ACTTGA Contig213739 1425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15385:50301_1:N:0:ACTTGA Contig623754 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21187:51797_1:N:0:ACTTGA Contig62730 10860 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19377:52177_1:N:0:ACTTGA Contig4002 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4137:52670_1:N:0:ACTTGA Contig16362 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4225:52950_1:N:0:ACTTGA Contig695001 275 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19969:52800_1:N:0:ACTTGA Contig410899 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21071:53257_1:N:0:ACTTGA Contig117248 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10743:55344_1:N:0:ACTTGA Contig97562 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10771:55313_1:N:0:ACTTGA Contig97562 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8056:56092_1:N:0:ACTTGA Contig252221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21193:56719_1:N:0:ACTTGA Contig71056 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:12357:57380_1:N:0:ACTTGA Contig189110 436 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18693:59343_1:N:0:ACTTGA Contig418836 1096 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4185:60180_1:N:0:ACTCGA Contig69479 8278 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8336:61109_1:N:0:ACTTGA Contig129205 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11947:61631_1:N:0:ACTTGA Contig67856 3586 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:6935:61846_1:N:0:ACTTGA Contig88172 2576 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:19562:63610_1:N:0:ACTTGA Contig127290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:15469:64285_1:N:0:ACTTGA Contig18922 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16256:65481_1:N:0:ACTTGA Contig151343 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:1820:66186_1:N:0:ACTTGA Contig172193 443 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7557:66088_1:N:0:ACTTGA Contig375270 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10395:66187_1:N:0:ACTTGA Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9544:67057_1:N:0:ACTTGA Contig326441 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13101:67560_1:N:0:ACTTGA Contig451241 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2622:68215_1:N:0:ACTTGA Contig626907 113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18773:68572_1:N:0:ACTTGA Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16794:70040_1:N:0:ACTTGA Contig610369 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8933:71089_1:N:0:ACTTGA Contig101999 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:20179:72406_1:N:0:ACTTGA Contig659868 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2474:72671_1:N:0:ACTTGA Contig686746 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:8939:74230_1:N:0:ACTTGA Contig226281 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4656:75393_1:N:0:ACTTGA Contig245017 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9146:76839_1:N:0:ACTTGA Contig179998 215 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:7944:77059_1:N:0:ACTTGA Contig335108 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10773:77482_1:N:0:ACTTGA Contig684976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16459:79941_1:N:0:ACTTGA Contig367413 167 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18873:81433_1:N:0:ACTTGA Contig396501 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10269:81987_1:N:0:ACTTGA Contig100960 9393 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21124:82882_1:N:0:ACTTGA Contig1166 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:18633:83034_1:N:0:ACTTGA Contig258517 162 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:13569:85257_1:N:0:ACTTGA Contig14864 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:10452:85639_1:N:0:ACTTGA Contig144517 874 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17597:85923_1:N:0:ACTTGA Contig87376 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:2433:86129_1:N:0:ACTTGA Contig541262 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:4617:86522_1:N:0:ACTTGA Contig331942 168 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:9934:87235_1:N:0:ACTTGA Contig478968 168 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:16615:87129_1:N:0:ACTTGA Contig90864 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:11270:91265_1:N:0:ACTTGA Contig20397 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14736:92886_1:N:0:ACTTGA Contig662506 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:17094:93394_1:N:0:ACTTGA Contig635164 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3769:93687_1:N:0:ACTTGA Contig314337 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:21108:94324_1:N:0:ACTTGA Contig129205 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:3299:94528_1:N:0:ACTTGA Contig124743 837 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:5424:96232_1:N:0:ACTTGA Contig59736 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1101:14972:97718_1:N:0:ACTTGA Contig292770 225 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5279:2396_1:N:0:ACTTGA Contig636059 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9553:2844_1:N:0:ACTTGA Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1600:4047_1:N:0:ACTTGA Contig386531 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19461:6904_1:N:0:ACTTGA Contig368331 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20611:6817_1:N:0:ACTTGA Contig406952 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7450:7338_1:N:0:ACTTGA Contig467114 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8880:8482_1:N:0:ACTTGA Contig635670 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14312:9312_1:N:0:ACTTGA Contig459573 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2029:10410_1:N:0:ACTTGA Contig132511 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2846:11470_1:N:0:ACTTGA Contig56752 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5232:11843_1:N:0:ACTTGA Contig17052 14111 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6571:12784_1:N:0:ACTTGA Contig163360 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8543:13314_1:N:0:ACTTGA Contig67856 3585 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17600:13916_1:N:0:ACTTGA Contig37909 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20088:14174_1:N:0:ACTTGA Contig396401 133 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16249:14656_1:N:0:ACTTGA Contig178183 950 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5853:15054_1:N:0:ACTTGA Contig438716 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20885:15450_1:N:0:ACTTGA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21015:15930_1:N:0:ACTTGA Contig538290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8034:17611_1:N:0:ACTTGA Contig428568 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13355:18655_1:N:0:ACTTGA Contig686207 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6873:18882_1:N:0:ACTTGA Contig233630 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20701:19938_1:N:0:ACTTGA Contig280728 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1703:21540_1:N:0:ACTTGA Contig342233 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4487:21808_1:N:0:ACTTGA Contig329043 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10586:22352_1:N:0:ACTTGA Contig384454 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18299:22288_1:N:0:ACTTGA Contig541147 118 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1977:24709_1:N:0:ACTTGA Contig264623 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4548:24650_1:N:0:ACTTGA Contig625372 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4665:25823_1:N:0:ACTTGA Contig92446 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6121:27749_1:N:0:ACTTGA Contig285268 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6070:27924_1:N:0:ACTTGA Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2565:28826_1:N:0:ACTTGA Contig357236 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3643:29044_1:N:0:ACTTGA Contig380138 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2412:29312_1:N:0:ACTTGA Contig129326 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16559:30109_1:N:0:ACTTGA Contig601013 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6582:31251_1:N:0:ACTTGA Contig296507 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1133:32295_1:N:0:ACTTGA Contig360581 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:20032:32279_1:N:0:ACTTGA Contig233470 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5001:34670_1:N:0:ACTTGA Contig66645 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16288:35195_1:N:0:ACTTGA Contig178534 1614 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16729:36135_1:N:0:ACTTGA Contig111906 10509 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10214:37968_1:N:0:ACTTGA Contig690156 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18528:37936_1:N:0:ACTTGA Contig77762 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3930:40542_1:N:0:ACTTGA Contig402077 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4533:40860_1:N:0:ACTTGA Contig98478 1573 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13485:43495_1:N:0:ACTTGA Contig19038 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5734:43748_1:N:0:ACTTGA Contig466298 235 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12442:46720_1:N:0:AATTGA Contig182247 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14716:47557_1:N:0:ACTTGA Contig91752 1445 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18645:48643_1:N:0:ACTTGA Contig373844 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8768:49328_1:N:0:ACTTGA Contig420565 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16176:49508_1:N:0:ACTTGA Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3448:49853_1:N:0:ACTTGA Contig378309 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6807:50132_1:N:0:ACTTGA Contig546343 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1095:50650_1:N:0:ACTTGA Contig631738 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3757:50864_1:N:0:ACTTGA Contig651219 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14462:52843_1:N:0:ACTTGA Contig459337 196 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21216:53065_1:N:0:ACTTGA Contig27277 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12869:53705_1:N:0:ACTTGA Contig112264 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8950:53884_1:N:0:ACTTGA Contig644976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:9150:54637_1:N:0:ACTTGA Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17886:55228_1:N:0:ACTTGA Contig629899 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17039:55788_1:N:0:ACTTGA Contig22824 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:7724:57521_1:N:0:ACTTGA Contig611330 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18879:57527_1:N:0:ACTTGA Contig603854 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5720:57877_1:N:0:ACTTGA Contig129461 2288 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6091:58312_1:N:0:ACTTGA Contig655728 245 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2376:61382_1:N:0:ACTTGA Contig63670 4695 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17988:61701_1:N:0:ACTTGA Contig361693 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19156:62207_1:N:0:ACTTGA Contig174765 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17117:62824_1:N:0:ACTTGA Contig446602 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:11238:63323_1:N:0:ACTTGA Contig689197 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15132:67439_1:N:0:ACTTGA Contig126564 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19330:68108_1:N:0:ACTTGA Contig620148 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13983:68864_1:N:0:ACTTGA Contig542159 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19229:69106_1:N:0:ACTTGA Contig15118 290 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21131:70121_1:N:0:ACTTGA Contig479154 974 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10117:71892_1:N:0:ACTTGA Contig47220 13047 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:19139:72329_1:N:0:ACTTGA Contig537474 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3218:73631_1:N:0:ACTTGA Contig393239 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8203:73874_1:N:0:ACTTGA Contig530919 124 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13720:73913_1:N:0:ACTTGA Contig137089 1038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17988:73848_1:N:0:ACTTGA Contig103001 2539 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5416:74442_1:N:0:ACTTGA Contig164559 869 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:21030:75570_1:N:0:ACTTGA Contig447780 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4812:75907_1:N:0:ACTTGA Contig572699 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3006:78588_1:N:0:ACTTGA Contig178183 951 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18542:78849_1:N:0:ACTTGA Contig91185 7580 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:6793:79216_1:N:0:ACTTGA Contig118590 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8100:81565_1:N:0:ACTTGA Contig282623 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:13543:82767_1:N:0:ACTTGA Contig139860 9827 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2729:85046_1:N:0:ACTTGA Contig468213 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:12337:85951_1:N:0:ACTTGA Contig344566 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:17218:85940_1:N:0:ACTTGA Contig22195 117 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:5160:86153_1:N:0:ACTTGA Contig383627 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:10452:86472_1:N:0:ACTTGA Contig685584 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:18120:86905_1:N:0:ACTTGA Contig358282 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14997:87128_1:N:0:ACTTGA Contig66441 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:14717:87789_1:N:0:ACTTGA Contig157306 619 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:1666:88362_1:N:0:ACTTGA Contig108531 6142 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:15833:91682_1:N:0:ACTTGA Contig569924 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4231:92279_1:N:0:ACTTGA Contig625928 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:3674:95917_1:N:0:ACTTGA Contig101880 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:2758:97575_1:N:0:ACTTGA Contig100635 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8310:98865_1:N:0:ACTTGA Contig552809 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:16548:98886_1:N:0:ACTTGA Contig298563 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:4938:99207_1:N:0:ACTTGA Contig212711 416 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1102:8899:99269_1:N:0:ACTTGA Contig80432 1801 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5670:5967_1:N:0:ACTTGA Contig560816 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:21077:7152_1:N:0:ACTTGA Contig497265 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7799:7942_1:N:0:ACTTGA Contig25781 13565 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15218:9362_1:N:0:ACTTGA Contig336336 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14097:9805_1:N:0:ACTTGA Contig260095 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14367:9967_1:N:0:ACTTGA Contig603811 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2473:12214_1:N:0:ACTTGA Contig622774 247 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3240:12386_1:N:0:ACTTGA Contig152502 805 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5447:13034_1:N:0:ACTTGA Contig32023 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3836:13949_1:N:0:ACTTGA Contig306995 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17389:14228_1:N:0:ACTTGA Contig555181 137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19931:15756_1:N:0:ACTTGA Contig203707 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20710:16390_1:N:0:ACTTGA Contig685294 89 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:1817:16623_1:N:0:ACTTGA Contig651867 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2123:16703_1:N:0:ACTTGA Contig11769 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18902:16929_1:N:0:ACTTGA Contig299128 107 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7594:17757_1:N:0:ACTTGA Contig16478 16161 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12290:17839_1:N:0:ACTTGA Contig37790 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17871:18065_1:N:0:ACTTGA Contig492344 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7873:18768_1:N:0:ACTTGA Contig565572 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12485:21863_1:N:0:ACTTGA Contig133832 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8756:23742_1:N:0:ACTTGA Contig575554 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20770:27113_1:N:0:ACTTGA Contig33867 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19108:27636_1:N:0:ACTTGA Contig53168 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17118:28282_1:N:0:ACTTGA Contig557687 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13047:28627_1:N:0:ACTTGA Contig349983 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2874:30744_1:N:0:ACTTGA Contig667583 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4446:30623_1:N:0:ACTTGA Contig496057 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16809:32546_1:N:0:ACTTGA Contig141090 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10650:32943_1:N:0:ACTTGA Contig570998 152 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18991:34388_1:N:0:ACTTGA Contig597713 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4050:36110_1:N:0:ACTTGA Contig260676 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13918:38650_1:N:0:ACTTGA Contig56667 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19223:40689_1:N:0:ACTTGA Contig84797 4902 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19187:41373_1:N:0:ACTTGA Contig657549 151 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7459:41711_1:N:0:ACTTGA Contig301519 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10421:43777_1:N:0:ACTTGA Contig252813 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17981:44414_1:N:0:ACTTGA Contig72633 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18724:46155_1:N:0:ACTTGA Contig676062 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2513:46931_1:N:0:ACTTGA Contig52440 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:3557:46781_1:N:0:ACTTGA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10346:46955_1:N:0:ACTTGA Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18931:48044_1:N:0:ACTTGA Contig4674 8208 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5467:49676_1:N:0:ACTTGA Contig578666 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8709:49634_1:N:0:ACTTGA Contig535093 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10286:50121_1:N:0:ACTTGA Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17368:51663_1:N:0:ACTTGA Contig421726 347 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17270:52268_1:N:0:ACTTGA Contig295853 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8532:52920_1:N:0:ACTTGA Contig437627 106 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:8961:56300_1:N:0:ACTTGA Contig250216 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20231:57224_1:N:0:ACTTGA Contig481475 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20119:57405_1:N:0:ACTTGA Contig411953 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:19828:57862_1:N:0:ACTTGA Contig654843 131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:16410:59129_1:N:0:ACTTGA Contig24029 6625 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10878:62650_1:N:0:ACTTGA Contig587858 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14400:63917_1:N:0:ACTTGA Contig399177 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9184:64229_1:N:0:ACTTGA Contig129205 1028 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:18108:64263_1:N:0:ACTTGA Contig315316 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4474:64562_1:N:0:ACTTGA Contig45848 21323 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:5318:65108_1:N:0:ACTTGA Contig243367 151 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2739:65667_1:N:0:ACTTGA Contig466581 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17117:67094_1:N:0:ACTTGA Contig8344 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2315:68198_1:N:0:ACTTGA Contig79892 1385 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9392:69240_1:N:0:ACTTGA Contig107277 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11657:71260_1:N:0:ACTTGA Contig92624 5610 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15803:71992_1:N:0:ACTTGA Contig329075 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14976:72837_1:N:0:ACTTGA Contig114613 1983 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13538:76966_1:N:0:ACTTGA Contig55481 13576 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:13847:76765_1:N:0:ACTTGA Contig13177 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15729:76878_1:N:0:ACTTGA Contig671690 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:2799:77067_1:N:0:ACTTGA Contig637452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12017:78698_1:N:0:ACTTGA Contig119377 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15350:78807_1:N:0:ACTTGA Contig186634 405 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10356:79796_1:N:0:ACTTGA Contig123949 1529 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7562:80409_1:N:0:ACTTGA Contig315471 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:9859:82402_1:N:0:ACTTGA Contig568956 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:14139:83486_1:N:0:ACTTGA Contig160049 2375 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:4335:84133_1:N:0:ACTTGA Contig478015 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15141:84611_1:N:0:ACTTGA Contig333575 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12160:86462_1:N:0:ACTTGA Contig436014 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20842:86314_1:N:0:ACTTGA Contig483851 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10856:88620_1:N:0:ACTTGA Contig127394 5048 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:7140:91321_1:N:0:ACTTGA Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15312:91498_1:N:0:ACTTGA Contig481080 97 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15322:94336_1:N:0:ACTTGA Contig351673 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:12057:95300_1:N:0:ACTTGA Contig2939 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:17037:95644_1:N:0:ACTTGA Contig49832 9867 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:11432:96146_1:N:0:ACTTGA Contig415383 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:15325:96341_1:N:0:ACTTGA Contig556535 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:20992:96361_1:N:0:ACTTGA Contig606852 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1103:10094:100172_1:N:0:ACTTGA Contig329744 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16272:2194_1:N:0:ACTTGA Contig6964 3469 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9141:2693_1:N:0:ACTTGA Contig489528 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10410:2860_1:N:0:ACTTGA Contig571561 90 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13056:5190_1:N:0:ACTTGA Contig642946 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10703:5443_1:N:0:ACTTGA Contig571210 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8488:7002_1:N:0:ACTTGA Contig499215 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12284:7074_1:N:0:ACTTGA Contig421226 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18879:8629_1:N:0:ACTTGA Contig195358 234 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3420:8873_1:N:0:ACTTGA Contig40273 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21042:11670_1:N:0:ACTTGA Contig500144 130 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1220:12730_1:N:0:ACTTGA Contig208562 702 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11717:13160_1:N:0:ACTTGA Contig354619 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1522:14187_1:N:0:ACTTGA Contig449107 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17887:14103_1:N:0:ACTTGA Contig27685 13163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17015:14833_1:N:0:ACTTGA Contig489528 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2260:15561_1:N:0:ACTTGA Contig544593 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15979:16387_1:N:0:ACTTGA Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19243:18200_1:N:0:ACTTGA Contig168431 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2914:21364_1:N:0:ACTTGA Contig114922 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3254:22147_1:N:0:ACTTGA Contig19127 113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4950:22313_1:N:0:ACTTGA Contig542597 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15559:22889_1:N:0:ACTTGA Contig104854 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19405:22752_1:N:0:ACTTGA Contig72477 6739 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13086:25152_1:N:0:ACTTGA Contig7001 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1386:25281_1:N:0:ACTTGA Contig436073 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6825:26252_1:N:0:ACTTGA Contig120734 2359 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:11981:29443_1:N:0:ACTTGA Contig244716 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5386:29755_1:N:0:ACTTGA Contig677962 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9985:30344_1:N:0:ACTTGA Contig657875 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6926:31783_1:N:0:ACTTGA Contig291101 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19715:32074_1:N:0:ACTTGA Contig316569 236 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12260:32499_1:N:0:ACTTGA Contig51083 51428 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5120:33972_1:N:0:ACTTGA Contig396840 83 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2833:34124_1:N:0:ACTTGA Contig15331 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4032:35961_1:N:0:ACTTGA Contig104191 1629 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5367:36198_1:N:0:ACTTGA Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18078:37729_1:N:0:ACTTGA Contig9319 766 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8470:37967_1:N:0:ACTTGA Contig291553 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19491:38296_1:N:0:ACTTGA Contig84290 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10004:40123_1:N:0:ACTTGA Contig66645 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9528:40292_1:N:0:ACTTGA Contig12700 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13970:40273_1:N:0:ACTTGA Contig491818 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2406:41728_1:N:0:ACTTGA Contig100050 1070 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17268:42671_1:N:0:ACTTGA Contig3684 8964 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13146:43054_1:N:0:ACTTGA Contig440171 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5897:44275_1:N:0:ACTTGA Contig537026 497 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16132:48390_1:N:0:ACTTGA Contig231839 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1189:48567_1:N:0:ACTTGA Contig483165 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3690:49444_1:N:0:ACTTGA Contig70394 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17353:52086_1:N:0:ACTTGA Contig341474 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10876:53152_1:N:0:ACTTGA Contig30881 16619 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19383:54168_1:N:0:ACTTGA Contig80876 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21300:54105_1:N:0:ACTTGA Contig549480 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3291:55344_1:N:0:ACTTGA Contig633476 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12861:56573_1:N:0:ACTTGA Contig439879 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15108:56641_1:N:0:ACTTGA Contig215022 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16116:58092_1:N:0:ACTTGA Contig306044 193 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13002:58400_1:N:0:ACTTGA Contig634036 163 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17074:59453_1:N:0:ACTTGA Contig548202 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18910:59471_1:N:0:ACTTGA Contig470896 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15094:59586_1:N:0:ACTTGA Contig199248 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1709:60826_1:N:0:ACTTGA Contig6274 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:1858:62242_1:N:0:ACTTGA Contig179830 355 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14279:62331_1:N:0:ACTTGA Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5423:63052_1:N:0:ACTTGA Contig54238 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13895:63379_1:N:0:ACTTGA Contig444684 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16713:64978_1:N:0:ACTTGA Contig117820 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19287:65090_1:N:0:ACTTGA Contig513578 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:21105:65089_1:N:0:ACTTGA Contig140274 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14081:65520_1:N:0:ACTTGA Contig178270 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17607:66657_1:N:0:ACTTGA Contig68695 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3513:67778_1:N:0:ACTTGA Contig259222 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18705:68783_1:N:0:ACTTGA Contig294509 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18281:69363_1:N:0:ACTTGA Contig37634 164 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7923:70113_1:N:0:ACTTGA Contig77767 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12752:72747_1:N:0:ACTTGA Contig657910 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6066:73342_1:N:0:ACTTGA Contig322890 225 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:17020:73745_1:N:0:ACTTGA Contig20397 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18004:74089_1:N:0:ACTTGA Contig110263 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10452:74966_1:N:0:ACTTGA Contig60519 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20741:75426_1:N:0:ACTTGA Contig579039 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16857:76184_1:N:0:ACTTGA Contig633094 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8685:76901_1:N:0:ACTTGA Contig272666 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2175:79456_1:N:0:ACTTGA Contig472285 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7236:79396_1:N:0:ACTTGA Contig137364 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16464:79613_1:N:0:ACTTGA Contig99807 3834 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9290:80021_1:N:0:ACTTGA Contig325239 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9977:81802_1:N:0:ACTTGA Contig5974 8404 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:2120:82166_1:N:0:ACTTGA Contig674291 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7587:82884_1:N:0:ACTTGA Contig252623 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:5684:83025_1:N:0:ACTTGA Contig184175 3925 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19827:84060_1:N:0:ACTTGA Contig257710 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15549:84353_1:N:0:ACTTGA Contig67092 5393 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15623:84824_1:N:0:ACTTGA Contig9323 1624 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:7283:86181_1:N:0:ACTTGA Contig72295 29928 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13466:86454_1:N:0:ACTTGA Contig312813 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:3044:86884_1:N:0:ACTTGA Contig4012 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:13725:87441_1:N:0:ACTTGA Contig207323 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16407:87617_1:N:0:ACTTGA Contig649878 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:9265:87970_1:N:0:ACTTGA Contig180919 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20405:89317_1:N:0:ACTTGA Contig163960 894 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15744:89635_1:N:0:ACTTGA Contig98034 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15615:90671_1:N:0:ACTTGA Contig271925 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4074:90891_1:N:0:ACTTGA Contig593865 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:12600:91245_1:N:0:ACTTGA Contig258226 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16105:92845_1:N:0:ACTTGA Contig71505 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:20131:93788_1:N:0:ACTTGA Contig497555 157 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16453:94090_1:N:0:ACTTGA Contig438716 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18217:94942_1:N:0:ACTTGA Contig9971 827 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16861:95674_1:N:0:ACTTGA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:16866:95695_1:N:0:ACTTGA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4791:95892_1:N:0:ACTTGA Contig184175 3925 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6868:96614_1:N:0:ACTTGA Contig392759 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8647:97238_1:N:0:ACTTGA Contig689926 103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:4129:97578_1:N:0:ACTTGA Contig162940 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:19790:98150_1:N:0:ACTTGA Contig525099 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:8319:98706_1:N:0:ACTTGA Contig477443 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:15427:98628_1:N:0:ACTTGA Contig24080 4725 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:6117:98763_1:N:0:ACTTGA Contig291412 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:14709:99152_1:N:0:ACTTGA Contig436232 158 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:10784:99649_1:N:0:ACTTGA Contig34929 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1104:18767:99941_1:N:0:ACTTGA Contig481475 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16991:2519_1:N:0:ACTTGA Contig527575 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13779:2879_1:N:0:ACTTGA Contig4955 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3532:3890_1:N:0:ACTTGA Contig118398 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7851:3832_1:N:0:ACTTGA Contig271437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14787:4398_1:N:0:ACTTGA Contig580738 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12431:5315_1:N:0:ACTTGA Contig551111 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10459:5640_1:N:0:ACTTGA Contig503174 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15730:5629_1:N:0:ACTTGA Contig100635 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18753:5848_1:N:0:ACTTGA Contig26049 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2540:6385_1:N:0:ACTTGA Contig195358 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17962:6680_1:N:0:ACTTGA Contig99807 3834 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19684:7811_1:N:0:ACTTGA Contig353340 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11833:8967_1:N:0:ACTTGA Contig282268 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5275:9599_1:N:0:ACTTGA Contig12444 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14545:9589_1:N:0:ACTTGA Contig6714 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4398:10232_1:N:0:ACTTGA Contig685082 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16811:11735_1:N:0:ACTTGA Contig192018 469 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16534:11802_1:N:0:ACTTGA Contig636632 224 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15348:12581_1:N:0:ACTTGA Contig583579 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7171:14221_1:N:0:ACTTGA Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6600:15201_1:N:0:ACTTGA Contig551527 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10381:15463_1:N:0:ACTTGA Contig461985 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12396:15868_1:N:0:ACTTGA Contig597406 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10910:16482_1:N:0:ACTTGA Contig67821 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12499:18979_1:N:0:ACTTGA Contig686475 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4707:19052_1:N:0:ACTTGA Contig143392 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1711:19602_1:N:0:ACTTAA Contig641314 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19277:21022_1:N:0:ACTTGA Contig13945 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19930:21340_1:N:0:ACTTGA Contig335500 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12031:22650_1:N:0:ACTTGA Contig665735 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13873:22581_1:N:0:ACTTGA Contig257539 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15060:23995_1:N:0:ACTTGA Contig4004 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18588:24491_1:N:0:ACTTGA Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5295:27128_1:N:0:ACTTGA Contig217014 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5712:27902_1:N:0:ACTTGA Contig21857 18273 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9428:27926_1:N:0:ACTTGA Contig110528 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8580:31152_1:N:0:ACTTGA Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14906:31497_1:N:0:ACTTGA Contig468440 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18825:31308_1:N:0:ACTTGA Contig560849 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5595:32237_1:N:0:ACTTGA Contig40273 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19561:33234_1:N:0:ACTTGA Contig88045 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15028:33817_1:N:0:ACTTGA Contig279327 70 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3343:35078_1:N:0:ACTTGA Contig9992 4136 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15166:36502_1:N:0:ACTTGA Contig519041 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17771:37094_1:N:0:ACTTGA Contig364609 169 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16060:37667_1:N:0:ACTTGA Contig218552 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13483:38850_1:N:0:ACTTGA Contig13964 1504 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11851:39142_1:N:0:ACTTGA Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14257:39230_1:N:0:ACTTGA Contig429501 100 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5266:39542_1:N:0:ACTTGA Contig622127 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:5267:40708_1:N:0:ACTTGA Contig265711 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12146:41155_1:N:0:ACTTGA Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11285:42080_1:N:0:ACTTGA Contig22900 28602 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3676:43143_1:N:0:ACTTGA Contig300694 92 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13249:43237_1:N:0:ACTTGA Contig643599 214 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13431:43693_1:N:0:ACTTGA Contig100509 1078 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10331:44454_1:N:0:ACTTGA Contig7983 13790 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11809:44980_1:N:0:ACTTGA Contig80756 2534 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8900:45327_1:N:0:ACTTGA Contig66850 10494 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4125:45523_1:N:0:ACTTGA Contig99098 5113 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16474:45903_1:N:0:ACTTGA Contig593592 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17961:46710_1:N:0:ACTTGA Contig143774 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12370:47530_1:N:0:ACTTGA Contig290221 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6420:48159_1:N:0:ACTTGA Contig642291 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:3460:48282_1:N:0:ACTTGA Contig464808 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:21124:51640_1:N:0:ACTTGA Contig109169 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16676:53231_1:N:0:ACTTGA Contig293343 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16853:53862_1:N:0:ACTTGA Contig315714 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11209:54001_1:N:0:ACTTGA Contig484762 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13043:54695_1:N:0:ACTTGA Contig52297 3425 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12584:55638_1:N:0:ACTTGA Contig216230 5619 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9364:55974_1:N:0:ACTTGA Contig172700 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13606:56233_1:N:0:ACTTGA Contig163300 661 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16621:56095_1:N:0:ACTTGA Contig47013 6109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11378:56313_1:N:0:ACTTGA Contig461841 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6466:56969_1:N:0:ACTTGA Contig70911 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9617:60151_1:N:0:ACTTGA Contig397411 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4537:60550_1:N:0:ACTTGA Contig128994 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10484:61157_1:N:0:ACTTGA Contig613149 134 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12172:62114_1:N:0:ACTTGA Contig122701 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7442:63739_1:N:0:ACTTGA Contig595891 105 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17094:64811_1:N:0:ACTTGA Contig290726 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19805:65818_1:N:0:ACTTGA Contig184396 3349 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18209:66748_1:N:0:ACTTGA Contig63990 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7998:67168_1:N:0:ACTTGA Contig382640 131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7116:67298_1:N:0:ACTTGA Contig35801 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6992:67650_1:N:0:ACTTGA Contig549636 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18278:68721_1:N:0:ACTTGA Contig358013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:19547:68985_1:N:0:ACTTGA Contig59209 1647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20489:69689_1:N:0:ACTTGA Contig131339 1218 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6544:70112_1:N:0:ACTTGA Contig67821 3139 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9886:70150_1:N:0:ACTTGA Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12850:70888_1:N:0:ACTTGA Contig94182 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7418:72733_1:N:0:ACTTGA Contig672922 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6027:73405_1:N:0:ACTTGA Contig166567 784 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:2915:74487_1:N:0:ACTTGA Contig486910 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:14503:74348_1:N:0:ACTTGA Contig56058 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17009:74661_1:N:0:ACTTGA Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6229:74896_1:N:0:ACTTGA Contig466298 235 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9572:75858_1:N:0:ACTTGA Contig27128 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1626:76109_1:N:0:ACTTGA Contig582284 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:4021:76499_1:N:0:ACTTGA Contig635923 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16682:76871_1:N:0:ACTTGA Contig516343 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1691:77069_1:N:0:ACTTGA Contig12094 242 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8859:77979_1:N:0:ACTTGA Contig584583 96 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8091:78910_1:N:0:ACTTGA Contig320954 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8367:78933_1:N:0:ACTTGA Contig670481 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:13544:78881_1:N:0:ACTTGA Contig149196 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:10262:80081_1:N:0:ACTTGA Contig82843 5248 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7030:82214_1:N:0:ACTTGA Contig684730 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:6820:82528_1:N:0:ACTTGA Contig220736 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18105:83155_1:N:0:ACTTGA Contig415288 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1305:86096_1:N:0:ACTTGA Contig689269 424 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17893:86045_1:N:0:ACTTGA Contig50531 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7042:88108_1:N:0:ACTTGA Contig271592 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7612:88636_1:N:0:ACTTGA Contig103667 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:12520:88854_1:N:0:ACTTGA Contig100539 2255 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:20036:91700_1:N:0:ACTTGA Contig143583 4039 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15819:93738_1:N:0:ACTTGA Contig321890 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1970:95126_1:N:0:ACTTGA Contig284670 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8937:95314_1:N:0:ACTTGA Contig57449 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:9284:95599_1:N:0:ACTTGA Contig652345 104 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:17327:95696_1:N:0:ACTTGA Contig687199 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:1987:95907_1:N:0:ACTTGA Contig5827 13716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:15669:96697_1:N:0:ACTTGA Contig44266 4520 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:7352:96920_1:N:0:ACTTGA Contig633094 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:8541:97492_1:N:0:ACTTGA Contig504043 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:16715:98114_1:N:0:ACTTGA Contig454130 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:18557:99828_1:N:0:ACTTGA Contig3504 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1105:11476:100025_1:N:0:ACTTGA Contig654067 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2798:2393_1:N:0:ACTTGA Contig362072 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5013:3777_1:N:0:ACTTGA Contig689197 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4686:4847_1:N:0:ACTTGA Contig81493 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6470:4919_1:N:0:ACTTGA Contig498307 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9375:5021_1:N:0:ACTTGA Contig298690 373 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16414:5272_1:N:0:ACTTGA Contig82757 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1888:6440_1:N:0:ACTTGA Contig171040 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11226:6455_1:N:0:ACTTGA Contig163118 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14752:6979_1:N:0:ACTTGA Contig16983 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4700:7324_1:N:0:ACTTGA Contig414714 381 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17370:10349_1:N:0:ACTTGA Contig437845 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2225:11719_1:N:0:ACTTGA Contig647954 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12114:12030_1:N:0:ACTTGA Contig600599 243 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7422:12697_1:N:0:ACTTGA Contig197442 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11824:13417_1:N:0:ACTTGA Contig137089 1038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11338:13889_1:N:0:ACTTGA Contig21483 8467 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6695:14648_1:N:0:ACTTGA Contig243367 151 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16897:14579_1:N:0:ACTTGA Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:6338:14815_1:N:0:ACTTGA Contig617279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19032:16084_1:N:0:ACTTGA Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8980:17674_1:N:0:ACTTGA Contig438716 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9745:18128_1:N:0:ACTTGA Contig247792 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13767:18931_1:N:0:ACTTGA Contig573035 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5905:19302_1:N:0:ACTTGA Contig393239 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13309:22432_1:N:0:ACTTGA Contig639636 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12399:22979_1:N:0:ACGTGA Contig301720 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18347:25880_1:N:0:ACTTGA Contig17247 6830 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20083:26154_1:N:0:ACTTGA Contig81239 2277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15197:26846_1:N:0:ACTTGA Contig43760 9414 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1131:28196_1:N:0:ACTTGA Contig184179 3616 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16465:28278_1:N:0:ACTTGA Contig208562 702 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9361:29806_1:N:0:ACTTGA Contig21559 13577 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16960:30092_1:N:0:ACTTGA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5897:30323_1:N:0:ACTTGA Contig119377 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17071:30305_1:N:0:ACTTGA Contig476015 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3540:31405_1:N:0:ACTTGA Contig65837 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17263:33305_1:N:0:ACTTGA Contig224935 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20129:34972_1:N:0:ACTTGA Contig437976 99 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1716:36032_1:N:0:ACTTGA Contig449590 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9939:36241_1:N:0:ACTTGA Contig676430 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18236:36051_1:N:0:ACTTGA Contig604793 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14364:37402_1:N:0:ACTTGA Contig73937 5659 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8230:38110_1:N:0:ACTTGA Contig548241 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7115:38254_1:N:0:ACTTGA Contig157721 768 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3591:38629_1:N:0:ACTTGA Contig469640 125 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18483:40027_1:N:0:ACTTGA Contig593515 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3748:40336_1:N:0:ACTTGA Contig150736 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7591:40922_1:N:0:ACTTGA Contig5827 13716 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17915:43879_1:N:0:ACTTGA Contig686399 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8923:44036_1:N:0:ACTTGA Contig197706 758 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3877:44254_1:N:0:ACTTGA Contig448472 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:17939:44293_1:N:0:ACTTGA Contig148872 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7876:46778_1:N:0:ACTTGA Contig81239 2277 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18966:47026_1:N:0:ACTTGA Contig62846 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2014:47626_1:N:0:ACTTGA Contig143583 4038 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:14038:49440_1:N:0:ACTTGA Contig458601 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16982:49946_1:N:0:ACTTGA Contig9576 779 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4058:50533_1:N:0:ACTTGA Contig415130 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18916:51068_1:N:0:ACTTGA Contig178159 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3738:51720_1:N:0:ACTTGA Contig340208 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2032:53434_1:N:0:ACTTGA Contig135767 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2442:54410_1:N:0:ACTTGA Contig70912 3278 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19764:55089_1:N:0:ACTTGA Contig78279 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20534:55073_1:N:0:ACTTGA Contig340834 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3227:56000_1:N:0:ACTTGA Contig149790 6599 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10121:56463_1:N:0:ACTTGA Contig309032 1103 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7506:59488_1:N:0:ACTTGA Contig309219 95 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1475:60547_1:N:0:ACTTGA Contig446225 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9838:61975_1:N:0:ACTTGA Contig396501 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12579:62615_1:N:0:ACTTGA Contig466298 233 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3953:63234_1:N:0:ACTTGA Contig614071 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11978:64166_1:N:0:ACTTGA Contig335668 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13820:64429_1:N:0:ACTTGA Contig645560 109 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10731:64634_1:N:0:ACTTGA Contig90884 1837 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3682:67387_1:N:0:ACTTGA Contig379963 82 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2400:69256_1:N:0:ACTTGA Contig528739 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:19748:69939_1:N:0:ACTTGA Contig167329 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4109:70958_1:N:0:ACTTGA Contig151288 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4229:71133_1:N:0:ACTTGA Contig94182 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10298:72179_1:N:0:ACTTGA Contig204717 2141 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3441:73271_1:N:0:ACTTGA Contig593865 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9744:73567_1:N:0:ACTTGA Contig92128 4647 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9372:74159_1:N:0:ACTTGA Contig322052 402 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4561:74569_1:N:0:ACTTGA Contig481983 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:11869:74903_1:N:0:ACTTGA Contig104400 1767 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:3293:77238_1:N:0:ACTTGA Contig386575 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12854:77133_1:N:0:ACTTGA Contig245155 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:20294:80561_1:N:0:ACTTGA Contig626436 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4359:80830_1:N:0:ACTTGA Contig296481 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18556:80844_1:N:0:ACTTGA Contig40327 2338 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7286:81636_1:N:0:ACTTGA Contig9126 736 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:9096:82452_1:N:0:ACTTGA Contig145629 7006 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12846:82623_1:N:0:ACTTGA Contig83964 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4923:83681_1:N:0:ACTTGA Contig45395 31219 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5888:83758_1:N:0:ACTTGA Contig333842 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13022:84160_1:N:0:ACTTGA Contig180919 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15055:84336_1:N:0:ACTTGA Contig359001 867 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:4463:87498_1:N:0:ACTTGA Contig66444 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:1426:88860_1:N:0:ACTTGA Contig359004 72 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:15909:90864_1:N:0:ACTTGA Contig2939 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2816:92351_1:N:0:ACTTGA Contig192602 1453 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:8609:92728_1:N:0:ACTTGA Contig131245 1900 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13941:92813_1:N:0:ACTTGA Contig171040 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:16452:93236_1:N:0:ACTTGA Contig37581 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:2976:94992_1:N:0:ACTTGA Contig448189 88 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:18251:94855_1:N:0:ACTTGA Contig513461 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:5502:95213_1:N:0:ACTTGA Contig80846 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:12003:96523_1:N:0:ACTTGA Contig512524 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:10708:98213_1:N:0:ACTTGA Contig615452 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:13638:100186_1:N:0:ACTTGA Contig269087 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1106:7825:101064_1:N:0:ACTTGA Contig492744 78 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8914:4059_1:N:0:ACTTGA Contig108622 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6748:5181_1:N:0:ACTTGA Contig178183 953 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7042:6984_1:N:0:ACTTGA Contig462768 140 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12256:6883_1:N:0:ACTTGA Contig408841 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20284:6899_1:N:0:ACTTGA Contig622089 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5870:8140_1:N:0:ACTTGA Contig507975 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11107:8803_1:N:0:ACTTGA Contig613795 432 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14371:8875_1:N:0:ACTTGA Contig78580 2682 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14235:9003_1:N:0:ACTTGA Contig668332 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2270:10175_1:N:0:ACTTGA Contig218635 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14032:10079_1:N:0:ACTTGA Contig94730 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6749:10560_1:N:0:ACTTGA Contig172293 937 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20866:11963_1:N:0:ACTTGA Contig587345 114 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1896:12348_1:N:0:ACTTGA Contig562407 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4105:13531_1:N:0:ACTTGA Contig209694 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4279:14064_1:N:0:ACTTGA Contig551643 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11101:14688_1:N:0:ACTTGA Contig681504 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6358:15376_1:N:0:ACTTGA Contig620763 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2764:15524_1:N:0:ACTTGA Contig228785 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12069:16593_1:N:0:ACTTGA Contig307018 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20555:18398_1:N:0:ACTTGA Contig435 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19611:19081_1:N:0:ACTTGA Contig109908 5296 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11612:21903_1:N:0:ACTTGA Contig71208 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6987:22027_1:N:0:ACTTGA Contig509043 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9568:22464_1:N:0:ACTTGA Contig11458 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20019:22564_1:N:0:ACTTGA Contig331950 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16892:23995_1:N:0:ACTTGA Contig326441 80 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6118:24097_1:N:0:ACTTGA Contig642838 128 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13162:24558_1:N:0:ACTTGA Contig265285 377 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16748:25238_1:N:0:ACTTGA Contig595983 107 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12558:25865_1:N:0:ACTTGA Contig52820 12646 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14390:27407_1:N:0:ACTTGA Contig548339 75 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8829:28789_1:N:0:ACTTGA Contig369418 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15321:30784_1:N:0:ACTTGA Contig695425 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19395:31025_1:N:0:ACTTGA Contig682755 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19736:31571_1:N:0:ACTTGA Contig438052 102 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14862:31804_1:N:0:ACTTGA Contig591035 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12255:32293_1:N:0:ACTTGA Contig361502 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10517:33725_1:N:0:ACTTGA Contig258621 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7832:34442_1:N:0:ACTTGA Contig66031 4138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17681:34938_1:N:0:ACTTGA Contig353866 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1636:35423_1:N:0:ACTTGA Contig130430 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1575:39660_1:N:0:ACTTGA Contig150304 993 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2959:39860_1:N:0:ACTTGA Contig561977 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17961:39864_1:N:0:ACTTGA Contig622127 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5693:40329_1:N:0:ACTTGA Contig425929 303 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13034:40381_1:N:0:ACTTGA Contig8767 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3201:40673_1:N:0:ACTTGA Contig81493 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2578:41283_1:N:0:ACTTGA Contig98831 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7707:41374_1:N:0:ACTTGA Contig351498 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18988:41935_1:N:0:ACTTGA Contig684976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3949:42722_1:N:0:ACTTGA Contig271437 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8362:42585_1:N:0:ACTTGA Contig3104 3559 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14318:42587_1:N:0:ACTTGA Contig270147 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8670:42866_1:N:0:ACTTGA Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1523:43032_1:N:0:ACTTGA Contig196882 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18015:43279_1:N:0:ACTTGA Contig528010 375 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17438:43690_1:N:0:ACTTGA Contig322052 404 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4585:44199_1:N:0:ACTTGA Contig203659 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9446:45028_1:N:0:ACTTGA Contig524673 71 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18109:45777_1:N:0:ACTTGA Contig518065 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12529:46812_1:N:0:ACTTGA Contig308447 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14569:47462_1:N:0:ACTTGA Contig677140 85 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16893:47699_1:N:0:ACTTGA Contig235004 650 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16041:48003_1:N:0:ACTTGA Contig197157 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16863:48431_1:N:0:ACTTGA Contig462545 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19759:50299_1:N:0:ACTTGA Contig89289 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7265:50879_1:N:0:ACTTGA Contig79884 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2547:51471_1:N:0:ACTTGA Contig653261 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16694:51302_1:N:0:ACTTGA Contig623593 108 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14636:51570_1:N:0:ACTTGA Contig410306 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11516:52678_1:N:0:ACTTGA Contig660656 84 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12019:52674_1:N:0:ACTTGA Contig321890 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12212:53823_1:N:0:ACTTGA Contig25163 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9033:54967_1:N:0:ACTTGA Contig8246 5836 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19565:55698_1:N:0:ACTTGA Contig392759 101 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19284:55773_1:N:0:ACTTGA Contig653283 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6403:56161_1:N:0:ACTTGA Contig279404 251 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17510:56294_1:N:0:ACTTGA Contig496915 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8971:56651_1:N:0:ACTTGA Contig114663 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8966:56706_1:N:0:ACTTGA Contig114663 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:4453:56913_1:N:0:ACTTGA Contig2939 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7535:56834_1:N:0:ACTTGA Contig28864 27254 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13871:57781_1:N:0:ACTTGA Contig592753 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11503:58985_1:N:0:ACTTGA Contig114055 1068 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9825:59081_1:N:0:ACTTGA Contig32976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5786:59521_1:N:0:ACTTGA Contig59968 3131 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6524:65523_1:N:0:ACTTGA Contig311652 91 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15437:66187_1:N:0:ACTTGA Contig16398 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16992:66327_1:N:0:ACTTGA Contig25186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7126:67640_1:N:0:ACTTGA Contig433206 236 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19518:68409_1:N:0:ACTTGA Contig91749 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6949:69135_1:N:0:ACTTGA Contig695885 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3497:69556_1:N:0:ACTTGA Contig143830 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7043:69620_1:N:0:ACTTGA Contig376799 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18293:70112_1:N:0:ACTTGA Contig218635 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14896:71290_1:N:0:TCTTGA Contig587219 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:17705:71812_1:N:0:ACTTGA Contig26049 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13274:73565_1:N:0:ACTTGA Contig584193 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14940:74102_1:N:0:ACTTGA Contig684976 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16381:74975_1:N:0:ACTTGA Contig483326 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5847:75087_1:N:0:ACTTGA Contig67821 3138 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12178:75867_1:N:0:ACTTGA Contig182529 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19448:75762_1:N:0:ACTTGA Contig3872 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5009:76147_1:N:0:ACTTGA Contig170027 3656 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19890:76740_1:N:0:ACTTGA Contig445967 126 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7055:78166_1:N:0:ACTTGA Contig617187 248 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:10120:78158_1:N:0:ACTTGG Contig221571 76 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:16707:78286_1:N:0:ACTTGA Contig188524 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19598:78821_1:N:0:ACTTGA Contig596212 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:19643:80270_1:N:0:ACTTGA Contig102570 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3398:81043_1:N:0:ACTTGA Contig657013 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2966:82695_1:N:0:ACTTGA Contig540649 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8397:82609_1:N:0:ACTTGA Contig322864 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:18333:83623_1:N:0:ACTTGA Contig662452 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2723:83895_1:N:0:ACTTGA Contig162104 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14712:84368_1:N:0:ACTTGA Contig470719 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13277:86532_1:N:0:ACTTGA Contig115061 4197 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:7944:86901_1:N:0:ACTTGA Contig501334 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:11932:88902_1:N:0:ACTTGA Contig450680 86 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6567:89340_1:N:0:ACTTGA Contig572718 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6603:89741_1:N:0:ACTTGA Contig119413 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:14634:90957_1:N:0:ACTTGA Contig339600 93 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:5011:91393_1:N:0:ACTTGA Contig593756 69 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:8175:91335_1:N:0:ACTTGA Contig652172 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2169:91529_1:N:0:ACTTGA Contig213533 930 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12764:92519_1:N:0:ACTTGA Contig546100 74 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:12419:93265_1:N:0:ACTTGA Contig36937 4883 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:9799:93507_1:N:0:ACTTGA Contig255999 269 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20461:94499_1:N:0:ACTTGA Contig133161 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:1136:96194_1:N:0:ACTTGA Contig181380 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:15520:99065_1:N:0:ACTTGA Contig67092 5393 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13963:99801_1:N:0:ACTTGA Contig59612 5199 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:2832:100581_1:N:0:ACTTGA Contig695395 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:6014:100779_1:N:0:ACTTGA Contig606327 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:13716:100847_1:N:0:ACTTGA Contig38952 1543 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:20117:100777_1:N:0:ACTTGA Contig136966 1853 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1107:3237:101094_1:N:0:ACTTGA Contig29257 3591 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5136:2334_1:N:0:ACTTGA Contig98831 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18182:2946_1:N:0:ACTTGA Contig374044 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14236:3594_1:N:0:ACTTGA Contig242792 79 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14687:5330_1:N:0:ACTTGA Contig382561 149 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5172:6173_1:N:0:ACTTGA Contig53330 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10694:6121_1:N:0:ACTTGA Contig76445 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14746:6060_1:N:0:ACTTGA Contig147186 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:16266:6828_1:N:0:ACTTGA Contig122243 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10377:7270_1:N:0:ACTTGA Contig20366 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17392:10940_1:N:0:ACTTGA Contig258287 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:19020:11560_1:N:0:ACTTGA Contig72096 6203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:2732:12961_1:N:0:ACTTGA Contig218635 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9324:13108_1:N:0:ACTTGA Contig190498 3137 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1117:13519_1:N:0:ACTTGA Contig181720 2030 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11992:15774_1:N:0:ACTTGA Contig130529 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3546:17233_1:N:0:ACTTGA Contig664366 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8470:17159_1:N:0:ACTTGA Contig139104 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17530:19512_1:N:0:ACTTGA Contig613818 81 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:3098:22609_1:N:0:ACTTGA Contig61099 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:6886:23257_1:N:0:ACTTGA Contig221571 77 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17931:23416_1:N:0:ACTTGA Contig299627 87 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:20859:24190_1:N:0:ACTTGA Contig50321 1220 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17166:24816_1:N:0:ACTTGA Contig15193 203 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9382:25286_1:N:0:ACTTGA Contig143583 4040 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:11662:25366_1:N:0:ACTTGA Contig117083 968 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14507:25891_1:N:0:ACTTGA Contig432261 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:14240:26066_1:N:0:ACTTGA Contig305376 1223 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:17179:26853_1:N:0:ACTTGA Contig262933 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:9255:27647_1:N:0:ACTTGA Contig608213 73 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:12891:27524_1:N:0:ACTTGA Contig581449 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:1580:29261_1:N:0:ACTTGA Contig657221 174 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:7349:29333_1:N:0:ACTTGA Contig61589 13320 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:10447:29350_1:N:0:ACTTGA Contig16579 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:5487:32731_1:N:0:ACTTGA Contig17702 2 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:8839:33051_1:N:0:ACTTGA Contig123930 1 Chromosomal sequence could not be extracted for HWI-D00743:54:C8MOMACXX:1:1108:18553:35713_1:N:0:ACTTGA Contig648325 1 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 788296 (78.83%) aligned 0 times 108680 (10.87%) aligned exactly 1 time 103024 (10.30%) aligned >1 times 21.17% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 367629 (36.76%) aligned 0 times 217322 (21.73%) aligned exactly 1 time 415049 (41.50%) aligned >1 times 63.24% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 787159 (78.72%) aligned 0 times 109642 (10.96%) aligned exactly 1 time 103199 (10.32%) aligned >1 times 21.28% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 368101 (36.81%) aligned 0 times 216607 (21.66%) aligned exactly 1 time 415292 (41.53%) aligned >1 times 63.19% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files 8_ACTTGA_L001_R1_001_trimmed.fq.gz_C_to_T.fastq and 8_ACTTGA_L001_R1_001_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 396833 Mapping efficiency: 39.7% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2243929 Total methylated C's in CpG context: 78909 Total methylated C's in CHG context: 6203 Total methylated C's in CHH context: 117847 Total methylated C's in Unknown context: 30 Total unmethylated C's in CpG context: 227701 Total unmethylated C's in CHG context: 409696 Total unmethylated C's in CHH context: 1403573 Total unmethylated C's in Unknown context: 382 C methylated in CpG context: 25.7% C methylated in CHG context: 1.5% C methylated in CHH context: 7.7% C methylated in Unknown context (CN or CHN): 7.3% Bismark completed in 0d 2h 54m 2s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_10_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_10_s456_trimmed.fq.gz to zr1394_10_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_10_s456_trimmed.fq.gz to zr1394_10_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_10_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_10_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_10_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_10_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1108:2120_1:Y:0:TATCTT 4 * 0 0 * * 0 0 ATTAATGAGAATGATTTTTTTTTTA B//FF>> Writing bisulfite mapping results to zr1394_10_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_10_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16993:2670_1:N:0:TAGCTT Contig629525 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15411:2947_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5028:3145_1:N:0:TAGCTT Contig257784 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15873:3702_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5568:4119_1:N:0:TAGCTT Contig572146 227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8169:4474_1:N:0:TAGCTT Contig347876 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12985:5200_1:N:0:TAGCTT Contig414714 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17304:6694_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18698:6857_1:N:0:TAGCTT Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4416:7020_1:N:0:TAGCTT Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2418:7661_1:N:0:TAGCTT Contig312818 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16059:7561_1:N:0:TAGCTT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8221:7896_1:N:0:TAGCTT Contig4032 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10417:8931_1:N:0:TAGCTT Contig23208 48889 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20451:10233_1:N:0:TAGCTT Contig654016 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17241:10382_1:N:0:TAGCTT Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8343:10606_1:N:0:TAGCTT Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9124:10885_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11809:10919_1:N:0:TAGCTT Contig184372 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14285:10759_1:N:0:TAGCTT Contig81775 1030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8787:11434_1:N:0:TAGCTT Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2438:11824_1:N:0:TAGCTT Contig644738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10051:11809_1:N:0:TAGCTT Contig611439 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9850:12681_1:N:0:TAGCTT Contig113375 1686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19766:12711_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2833:13354_1:N:0:TAGCTT Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14736:13956_1:N:0:TAGCTT Contig585284 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19015:14132_1:N:0:TAGCTT Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8659:14465_1:N:0:TAGCTT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13961:15635_1:N:0:TAGCTT Contig303333 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19561:15975_1:N:0:TAGCTT Contig501995 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7462:16630_1:N:0:TAGCTT Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14430:16689_1:N:0:TAGCTT Contig6187 4302 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16951:16532_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13460:17758_1:N:0:TAGCTT Contig31499 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12072:18133_1:Y:0:TAGCTT Contig261481 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16433:18392_1:N:0:TAGCTT Contig356944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1167:19393_1:N:0:TAGCTT Contig55720 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18746:19963_1:N:0:TAGCTT Contig411763 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7853:20426_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2461:20904_1:N:0:TAGCTT Contig242744 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5273:21079_1:N:0:TAGCTT Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5307:21223_1:N:0:TAGCTT Contig72295 29928 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9673:21202_1:N:0:TAGCTT Contig204921 2120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13981:21128_1:N:0:TAGCTT Contig167634 6560 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18578:21215_1:Y:0:TAGCTT Contig632348 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1960:21268_1:N:0:TAGCTT Contig386531 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2173:21341_1:N:0:TAGCTT Contig234312 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14859:21598_1:N:0:TAGCTT Contig385215 5686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15428:21625_1:N:0:TAGCTT Contig183452 578 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13684:22560_1:N:0:TAGCTT Contig540856 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16466:22607_1:N:0:TAGCTT Contig20969 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4577:22812_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8140:22870_1:N:0:TAGCTT Contig98072 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17825:22873_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4918:23694_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4091:24842_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2215:25072_1:N:0:TAGCTT Contig58764 6215 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13773:25088_1:N:0:TAGCTT Contig167877 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12322:25320_1:N:0:TAGCTT Contig58764 6215 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8109:25629_1:N:0:TAGCTT Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2862:27312_1:N:0:TAGCTT Contig211686 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2917:27794_1:N:0:TAGCTT Contig523940 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9879:29377_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4063:29549_1:N:0:TAGCTT Contig90734 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12613:29521_1:N:0:TAGCTT Contig136015 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8692:30337_1:N:0:TAGCTT Contig357783 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17391:30640_1:N:0:TAGCTT Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16860:31055_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1200:31682_1:N:0:TAGCTT Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15513:31970_1:N:0:TAGCTT Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1306:32053_1:N:0:TAGCTT Contig130274 1430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16150:32838_1:N:0:TAGCTT Contig590770 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11519:33198_1:N:0:TAGCTT Contig480653 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16279:33702_1:N:0:TAGCTT Contig128141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20908:33675_1:N:0:TAACTT Contig69363 2718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16272:34993_1:N:0:TAGCTT Contig209565 642 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3291:35050_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15794:35826_1:Y:0:TAGCTT Contig167897 662 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17159:36360_1:N:0:TAGCTT Contig47022 13027 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5409:37122_1:N:0:TAGCTT Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9347:37209_1:N:0:TAGCTT Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11383:37773_1:N:0:TAGCTT Contig3884 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6528:40004_1:N:0:TAGCTT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20601:40307_1:Y:0:TAGCTT Contig52304 19148 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18208:40571_1:N:0:TAGCTT Contig104147 1226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7754:42059_1:N:0:TAGCTT Contig116318 1708 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15297:44478_1:Y:0:TAGCTT Contig645468 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2819:44506_1:N:0:TAGCTT Contig685443 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9537:44618_1:N:0:TAGCTT Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13659:44771_1:N:0:TAGCTT Contig33217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:21151:44755_1:N:0:TAGCTT Contig596500 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7818:45401_1:N:0:TAGCTT Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14965:45437_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4449:45640_1:N:0:TAGCTT Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15890:45952_1:N:0:TAGCTT Contig245735 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9639:47420_1:N:0:TAGCTT Contig111753 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17339:47553_1:N:0:TAGCTT Contig494604 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11035:48545_1:N:0:TAGCTT Contig575589 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3557:48781_1:N:0:TAGCTT Contig163081 2823 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8696:49706_1:N:0:TAGCTT Contig533816 187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8685:49717_1:N:0:TAGCTT Contig533816 187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8931:49907_1:N:0:TAGCTT Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3666:50473_1:N:0:TAGCTT Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5422:50561_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20351:50577_1:N:0:TAGCTT Contig143855 2495 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11084:50835_1:N:0:TAGCTT Contig635923 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15889:52540_1:N:0:TAGCTT Contig184175 3925 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8414:52984_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20446:53663_1:N:0:TAGCTT Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10399:54397_1:N:0:TAGCTT Contig545484 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16782:54405_1:N:0:TAGCTT Contig670732 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9346:55133_1:Y:0:TAGCTT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12730:55140_1:N:0:TAGCTT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14357:55043_1:N:0:TAGCTT Contig193267 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18651:55479_1:Y:0:TAACTT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17037:55853_1:N:0:TAGCTT Contig343890 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16958:57414_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12372:58527_1:N:0:TAGCTT Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17955:60258_1:N:0:TAGCTT Contig89673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15250:60507_1:N:0:TAGCTT Contig166736 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14318:60977_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18042:60753_1:Y:0:TAGCTT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6094:61856_1:N:0:TAGCTT Contig48907 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2768:62167_1:N:0:TAGCTT Contig39377 4444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9047:62641_1:N:0:TAGCTT Contig316898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10013:64221_1:N:0:TAGCTT Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4101:64324_1:N:0:TAGCTT Contig272596 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14518:64720_1:N:0:TAGCTT Contig333367 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13511:65565_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9294:66132_1:N:0:TAGCTT Contig119665 1276 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17920:66202_1:N:0:TAGCTT Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13942:66252_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17858:66282_1:N:0:TAGCTT Contig191484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18734:66327_1:N:0:TAGCTT Contig93525 1223 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4461:66822_1:Y:0:TAGCTT Contig126007 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7393:66888_1:N:0:AAGCTT Contig607840 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12270:66802_1:N:0:TAGCTT Contig65766 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9304:69939_1:N:0:TAGCTT Contig437684 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11768:70493_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8122:70572_1:N:0:TAGCTT Contig58165 2668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2552:71383_1:N:0:TAGCTT Contig354392 731 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8437:71307_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1142:71989_1:N:0:TAGCTT Contig18716 78249 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1869:71923_1:N:0:TAGCTT Contig311276 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11139:72775_1:N:0:TAGCTT Contig252442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8300:73723_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11046:74306_1:N:0:TAGCTT Contig246983 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16974:75063_1:N:0:TAGCTT Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12294:76110_1:N:0:TAGCTT Contig49996 1915 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7495:76720_1:N:0:TAGCTT Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20666:76693_1:N:0:TAGCTT Contig22384 43638 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7626:77223_1:N:0:TAGCTT Contig55633 9951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17486:77268_1:Y:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13778:77813_1:N:0:TAGCTT Contig55184 4566 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15889:78515_1:N:0:TAGCTT Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15514:79154_1:N:0:TAGCTT Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5339:80011_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15489:80035_1:N:0:TAGCTT Contig200416 369 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18018:80491_1:N:0:TAGCTT Contig61736 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9899:80838_1:N:0:TAGCTT Contig9013 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5449:81229_1:Y:0:TAGCTT Contig657637 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5498:81679_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2353:81949_1:N:0:TAGCTT Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13726:81982_1:N:0:TAGCTT Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2529:82234_1:N:0:TAGCTT Contig515784 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20569:82454_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20487:82693_1:N:0:TAGCTT Contig358646 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13378:83288_1:N:0:TAGCTT Contig402652 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13746:83459_1:N:0:TAGCTT Contig76257 233 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3458:84286_1:N:0:TAGCTT Contig148429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15392:85200_1:N:0:TAGCTT Contig158190 4545 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5967:85892_1:N:0:TAGCTT Contig518392 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19626:86028_1:N:0:TAGCTT Contig125259 1319 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18885:86629_1:N:0:TAGCTT Contig617439 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9587:87232_1:N:0:TAGCTT Contig359762 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19821:87406_1:N:0:TAGCTT Contig557232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9482:87842_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15768:88242_1:N:0:TAGCTT Contig33540 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1322:88425_1:Y:0:TAGCTG Contig103363 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6205:89119_1:N:0:TAGCTT Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10126:89066_1:N:0:TAGCTT Contig5709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16453:89089_1:N:0:TAGCTT Contig452351 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1742:89514_1:Y:0:TAGCTT Contig69363 2718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10740:89655_1:N:0:TAGCTT Contig439948 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7589:90807_1:N:0:TAGCTT Contig330383 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12521:90860_1:N:0:TAGCTT Contig639010 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13999:91290_1:N:0:TAGCTT Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1616:91638_1:N:0:TAGCTT Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4759:91897_1:N:0:TAGCTT Contig16440 752 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6370:92386_1:N:0:TAGCTT Contig403649 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6377:93033_1:N:0:TAGCTT Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6710:93204_1:N:0:TAGCTT Contig87998 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10665:94523_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19887:94712_1:N:0:TAGCTT Contig122341 5862 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20452:94605_1:N:0:TAGCTT Contig21236 67006 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14367:95252_1:N:0:TAGCTT Contig235004 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6895:96080_1:N:0:TAGCTT Contig286563 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12734:97168_1:N:0:TAGCTT Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16814:97499_1:N:0:TAGCTT Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2748:97970_1:N:0:TAGCTT Contig157385 1106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2411:98437_1:N:0:TAGCTT Contig423525 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13738:98989_1:N:0:TAGCTT Contig138423 7687 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14235:99469_1:N:0:TAGCTT Contig98010 1760 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3210:100042_1:N:0:TAGCTT Contig531891 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4388:100039_1:N:0:TAGCTT Contig543061 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10640:100293_1:N:0:TAGCTT Contig465022 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20247:2287_1:N:0:TAGCTT Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13622:4138_1:N:0:TAGCTT Contig6668 4190 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11386:5761_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11472:5775_1:N:0:TAGCTT Contig135341 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17434:5980_1:N:0:TAGCTT Contig317778 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6038:6245_1:N:0:TAGCTT Contig154834 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6844:6489_1:N:0:TAGCTT Contig19269 9129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6929:6497_1:N:0:TAGCTT Contig315572 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11151:6659_1:N:0:TAGCTT Contig628075 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18067:7621_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7462:7958_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13226:7907_1:N:0:TAGCTT Contig258429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19287:9422_1:N:0:TAGCTT Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13350:9563_1:N:0:TAGCTT Contig105161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8998:10187_1:N:0:TAGCTT Contig19207 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16465:10214_1:N:0:TAGCTT Contig120678 1043 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9647:10716_1:N:0:TAGCTT Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16779:10954_1:Y:0:TAGCTT Contig521469 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5376:11041_1:N:0:TAGCTT Contig68854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10519:11593_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13235:11695_1:N:0:TAGCTT Contig197727 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15195:13209_1:N:0:TAGCTT Contig613828 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15336:13425_1:N:0:TAGCTT Contig687242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9427:13697_1:N:0:TAGCTT Contig296481 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16341:13624_1:N:0:TAGCTT Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:21000:14464_1:N:0:TAGCTT Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15775:14527_1:N:0:TAGCTT Contig603406 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6064:14888_1:N:0:TAGCTT Contig471033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7112:14806_1:N:0:TAGCTT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18414:15100_1:N:0:TAGCTT Contig38412 5426 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1772:16340_1:N:0:TAGCTT Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2797:16604_1:N:0:TAGCTT Contig319334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10026:16618_1:N:0:TAGCTT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14950:16814_1:Y:0:TAGCTT Contig112006 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8674:17297_1:N:0:TAGCTT Contig81493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3496:18263_1:N:0:TAGCTT Contig631683 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9782:18281_1:N:0:TAGCTT Contig76963 5824 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7633:18985_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5176:19022_1:N:0:TAGCTT Contig13055 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5745:19082_1:N:0:TAGCTT Contig149149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16765:19049_1:N:0:TAGCTT Contig108161 5758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13009:19323_1:N:0:TAGCTT Contig416040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19646:19900_1:N:0:TAGCTT Contig318323 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13399:20152_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5476:20442_1:N:0:TAGCTT Contig165916 564 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11598:20317_1:N:0:TAGCTT Contig115953 1311 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5078:21707_1:N:0:TAGCTT Contig269341 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3050:22142_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8960:22343_1:Y:0:TAGCTT Contig405033 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2959:22535_1:N:0:TAGCTT Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13537:23205_1:N:0:TAGCTT Contig549704 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15289:25223_1:N:0:TAGCTT Contig107556 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10953:25419_1:Y:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12999:25400_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11437:25747_1:N:0:TAGCTT Contig200416 370 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19419:26356_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7748:26964_1:N:0:TAGCTT Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2142:27332_1:N:0:TAGCTT Contig190401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15430:27463_1:N:0:TAGCTT Contig399618 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2830:27664_1:N:0:TAGCTT Contig569896 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9084:27695_1:N:0:TAGCTT Contig25055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15641:27673_1:N:0:TAGCTT Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7319:27816_1:N:0:TAGCTT Contig246787 182 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13568:28654_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14340:28761_1:N:0:TAGCTT Contig69829 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4172:29296_1:N:0:TAGCTT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16491:29429_1:N:0:TAGCTT Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20950:29637_1:N:0:TAGCTT Contig98959 14470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10050:29999_1:N:0:TAGCTT Contig128385 977 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19091:30158_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12966:31674_1:N:0:TAGCTT Contig351560 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2957:32964_1:N:0:TAGCTT Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18771:32991_1:N:0:TAGCTT Contig181885 1076 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10397:33245_1:N:0:TAGCTT Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6773:33548_1:N:0:TAGCTT Contig224935 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6297:34139_1:N:0:TAGCTT Contig125278 3050 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9016:35072_1:N:0:TAGCTT Contig591319 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3918:35343_1:N:0:TAGCTT Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5148:35770_1:N:0:TAGCTT Contig167877 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12979:36098_1:N:0:TAGCTT Contig96628 1443 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11266:36264_1:N:0:TAGCTT Contig520323 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2713:37337_1:N:0:TAGCTT Contig360958 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2167:37726_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18624:38091_1:N:0:TAGCTT Contig69363 2718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12417:38391_1:N:0:TAGCTT Contig175398 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7102:39444_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20985:39292_1:Y:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11388:39724_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8941:40175_1:N:0:TAGCTT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3788:40292_1:N:0:TAGCTT Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3945:41197_1:N:0:TAGCTT Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4958:41197_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9523:41113_1:N:0:TAGCTT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4676:42278_1:N:0:TAGCTT Contig102838 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10967:42454_1:N:0:TAGCTT Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4189:42711_1:N:0:TAGCTT Contig374586 1688 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1943:42989_1:Y:0:TAGCTT Contig33932 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13839:43898_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11861:44715_1:N:0:TAGCTT Contig464544 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20642:44512_1:N:0:TAGCTT Contig551271 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2283:45172_1:N:0:TAGCTT Contig276556 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18806:45337_1:N:0:TAGCTT Contig111555 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18760:45614_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10200:45856_1:N:0:TAGCTT Contig668140 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12144:45883_1:N:0:TAGCTT Contig474092 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5328:46019_1:N:0:TAGCTT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7225:47495_1:N:0:TAGCTT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1909:47549_1:Y:0:TCGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13968:47565_1:N:0:TAGCTT Contig651904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15961:48859_1:N:0:TAGCTT Contig355712 143 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7288:50552_1:N:0:TAGCTT Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9177:50689_1:N:0:TAGCTT Contig579818 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8426:52246_1:N:0:TAGCTT Contig74923 12935 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:21038:52886_1:N:0:TAGCTT Contig63951 4546 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9674:53225_1:N:0:TAGCTT Contig346524 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4671:53546_1:N:0:TAGCTT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13199:53710_1:Y:0:TAGCTT Contig103179 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3691:54070_1:N:0:TAGCTT Contig201331 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11468:54077_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5959:54474_1:N:0:TAGCTT Contig553163 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13510:54980_1:N:0:TAGCTT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10839:55727_1:N:0:TAGCTT Contig102206 11788 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3678:55865_1:N:0:TAGCTT Contig45395 31219 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3448:56114_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7756:56240_1:N:0:TAGCTT Contig50321 1220 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10016:56462_1:N:0:TAGCTT Contig161028 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15928:57662_1:N:0:TAGCTT Contig395964 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10011:58973_1:N:0:TAGCTT Contig63897 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9771:59919_1:N:0:TAGCTT Contig414714 382 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8803:60054_1:N:0:TAGCTT Contig20864 1692 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8984:60508_1:N:0:TAGCTT Contig66818 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14250:61196_1:N:0:TAGCTT Contig400864 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2418:61557_1:N:0:TAGCTT Contig615831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11127:61553_1:N:0:TAGCTT Contig476118 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10072:63328_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11769:63848_1:N:0:TAACTT Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14140:63921_1:N:0:TAGCTT Contig694092 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18935:63981_1:N:0:TAGCTT Contig25964 8821 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11041:64254_1:N:0:TAGCTT Contig165520 473 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4261:64732_1:N:0:TAGCTT Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9918:64634_1:N:0:TAGCTT Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18889:65444_1:N:0:TAGCTT Contig351541 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20184:65374_1:N:0:TAGCTT Contig586033 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10788:65567_1:N:0:TAGCTT Contig306106 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14302:65596_1:N:0:TAGCTT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19926:65647_1:N:0:TAGCTT Contig433682 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1255:66037_1:N:0:TAGCTT Contig106032 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10628:66065_1:N:0:TAGCTT Contig60600 18999 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15666:66753_1:N:0:TAGCTT Contig583206 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16009:67725_1:N:0:TAGCTT Contig19269 9130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16646:67796_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20794:67982_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15312:68233_1:N:0:TAGCTT Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15346:68771_1:N:0:TAGCTT Contig178753 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20110:68776_1:N:0:TAGCTT Contig3000 11057 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17608:69998_1:N:0:TAGCTT Contig528361 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2543:70214_1:N:0:TAGCTT Contig137329 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:21072:70604_1:N:0:TAGCTT Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13870:71833_1:N:0:TAGCTT Contig109913 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14913:72092_1:N:0:TAGCTT Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1407:72936_1:Y:0:TCGCTT Contig161517 343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2936:73614_1:N:0:TAGCTT Contig185168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14348:73514_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16152:74116_1:N:0:TAGCTT Contig552872 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1921:74487_1:N:0:TAGCTT Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20840:74549_1:N:0:TAGCTT Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18477:75266_1:N:0:TAGCTT Contig512343 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2272:75772_1:N:0:TAGCTT Contig443961 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17672:77445_1:N:0:TAGCTT Contig181790 414 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7184:77704_1:N:0:TAGCTT Contig96078 1732 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5494:78572_1:N:0:TAGCTT Contig215392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1579:79317_1:N:0:TAGCTT Contig457709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10432:79268_1:N:0:TAGCTT Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11050:79440_1:N:0:TAGCTT Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6746:79575_1:N:0:TAGCTT Contig331213 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11244:79549_1:N:0:TAGCTT Contig635415 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9748:80321_1:N:0:TAGCTT Contig276608 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7060:80508_1:N:0:TAGCTT Contig38626 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10461:82105_1:N:0:TAGCTT Contig110886 1093 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17140:82609_1:N:0:TAGCTT Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3481:83647_1:N:0:TAGCTT Contig292091 9069 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12598:83850_1:N:0:TAGCTT Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11149:84381_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10260:84951_1:N:0:TAGCTT Contig443925 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8966:85235_1:N:0:TAGCTT Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10399:85714_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5680:86853_1:N:0:TAGCTT Contig686090 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15624:86756_1:N:0:TAGCTT Contig36630 41535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5848:87918_1:N:0:TAGCTT Contig680495 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4204:88092_1:N:0:TAGCTT Contig542597 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12841:88263_1:N:0:TAGCTT Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14755:88392_1:N:0:TAGCTT Contig678358 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11070:88651_1:N:0:TAGCTT Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5651:88860_1:N:0:TAGCTT Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17241:89057_1:N:0:TAGCTT Contig64114 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20583:89191_1:N:0:TAGCTT Contig306106 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1208:89541_1:N:0:TAGCTT Contig52396 6038 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9956:89771_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9911:89860_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18891:90092_1:N:0:TAGCTT Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20170:91966_1:N:0:TAGCTT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20800:92792_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10074:93047_1:N:0:TAGCTT Contig450327 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5855:93255_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14964:93557_1:N:0:TAGCTT Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19410:93965_1:N:0:TAGCTT Contig610450 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9017:95398_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5214:95586_1:N:0:TAGCTT Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6722:95601_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6645:96651_1:N:0:TAGCTT Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6778:97367_1:N:0:TAGCTT Contig653947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18786:97900_1:Y:0:TGGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15562:98885_1:N:0:TAGCTT Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17812:98819_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14488:99209_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9086:99478_1:N:0:TAGCTT Contig269212 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20329:100141_1:N:0:TAGCTT Contig576465 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13134:2163_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14904:2558_1:N:0:TAGCTT Contig383229 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14651:3136_1:N:0:TAGCTT Contig5683 19295 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14799:3988_1:N:0:TAGCTT Contig541320 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14634:4033_1:N:0:TAGCTT Contig367031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9389:4377_1:N:0:TAGCTT Contig174212 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11851:4344_1:N:0:TAGCTT Contig260781 233 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6484:4888_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12745:4904_1:N:0:TAGCTT Contig156601 450 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20010:5026_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12435:5685_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6419:6508_1:N:0:TAGCTT Contig58165 2668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14532:7398_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7515:8230_1:N:0:TAGCTT Contig544135 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14490:8332_1:N:0:TAGCTT Contig530990 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7112:9182_1:N:0:TAGCTT Contig359524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18944:9216_1:N:0:TAGCTT Contig49739 5164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12426:9444_1:N:0:TAGCTT Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10129:10736_1:N:0:TAGCTT Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5125:12029_1:N:0:TAGCTT Contig350249 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2356:12252_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3261:12421_1:N:0:TAGCTT Contig175506 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3727:12395_1:N:0:TAGCTT Contig171786 663 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16713:12408_1:N:0:TAGCTT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19826:12449_1:N:0:TAGCTT Contig16845 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5375:13183_1:N:0:TAGCTT Contig305404 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5288:13488_1:N:0:TAGCTT Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5324:15546_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7432:15908_1:N:0:TAGCTT Contig440652 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12939:15751_1:N:0:TAGCTT Contig144154 1406 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1826:16029_1:Y:0:TAGCTT Contig695859 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2823:16496_1:N:0:TAGCTT Contig344247 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15635:17814_1:N:0:TAGCTT Contig286563 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5630:18709_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7231:19048_1:N:0:TAGCTT Contig114391 913 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18062:19536_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3407:19885_1:N:0:TAGCTT Contig491451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16796:20287_1:N:0:TAGCTT Contig515784 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20619:20473_1:N:0:TAGCTT Contig590031 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19000:20738_1:N:0:TAGCTT Contig146612 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5090:21142_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17029:21018_1:N:0:TAGCTT Contig49419 2122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18335:21617_1:N:0:TAGCTT Contig322052 404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4589:21753_1:N:0:TAGCTT Contig605232 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6696:21820_1:N:0:TTGCTT Contig160316 949 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9699:22242_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11193:22505_1:N:0:TAGCTT Contig360561 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13645:24101_1:N:0:TAGCTT Contig262735 4723 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11341:24400_1:N:0:TAGCTT Contig179108 769 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16152:24431_1:Y:0:TAGCTT Contig460300 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7514:25619_1:N:0:TAGCTT Contig403074 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18152:26379_1:N:0:TAGCTT Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12886:26913_1:N:0:TAGCTT Contig373353 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11039:27046_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12564:27114_1:N:0:TAGCTT Contig399726 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9869:27331_1:N:0:TAGCTT Contig144154 1405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18807:27285_1:N:0:TAGCTT Contig383229 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2636:28414_1:N:0:TAGCTT Contig592209 197 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2295:28705_1:N:0:TAGCTT Contig72838 5385 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10717:28717_1:N:0:TAGCTT Contig220374 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14811:29934_1:N:0:TAGCTT Contig695859 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15234:29756_1:N:0:TAGCTT Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1499:30122_1:Y:0:TAGCTT Contig653947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5496:30103_1:N:0:TAGCTT Contig384750 481 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14983:30470_1:N:0:TAGCTT Contig498875 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1316:30720_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16198:30832_1:N:0:TAGCTT Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9408:31661_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8598:31897_1:N:0:TAGCTT Contig26066 23531 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16758:31823_1:N:0:TAGCTT Contig400353 457 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11116:32445_1:N:0:TAGCTT Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16137:32938_1:N:0:TAGCTT Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12167:34214_1:N:0:TAGCTT Contig490865 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13994:34335_1:N:0:TAGCTT Contig515495 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3417:34724_1:N:0:TAGCTT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8380:34888_1:N:0:TAGCTT Contig496371 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18376:35862_1:N:0:TAGCTT Contig235004 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9146:36332_1:N:0:TAGCTT Contig344803 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16681:36325_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6884:36594_1:N:0:TAGCTT Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3579:37080_1:N:0:TAGCTT Contig185262 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17364:37138_1:N:0:TAGCTT Contig68854 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4993:37266_1:N:0:TAGCTT Contig88376 1751 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5552:37862_1:N:0:TAGCTT Contig66955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16169:38478_1:N:0:TAGCTT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17028:38464_1:N:0:TAGCTT Contig88381 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7988:38692_1:N:0:TAGCTT Contig300721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1276:40170_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13275:40083_1:N:0:TAGCTT Contig382039 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6771:40752_1:N:0:TAGCTT Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15530:40846_1:N:0:TAGCTT Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20882:41682_1:N:0:TAGCTT Contig566447 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20838:41913_1:Y:0:TAGCTT Contig175337 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:21026:42192_1:Y:0:TAGCTT Contig233938 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11249:43448_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5537:43652_1:N:0:TAGCTT Contig347923 470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14880:44106_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3934:44342_1:N:0:TAGCTT Contig182863 430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13211:44449_1:N:0:TAGCTT Contig571958 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8001:44598_1:N:0:TAACTT Contig513901 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5992:45369_1:N:0:TAGCTT Contig435848 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7898:45266_1:N:0:TAGCTT Contig589103 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3140:46758_1:N:0:TAGCTT Contig208095 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13788:46764_1:N:0:TAGCTT Contig456860 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7268:47379_1:N:0:TAGCTT Contig19272 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9242:47328_1:N:0:TAGCTT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10948:47562_1:N:0:TAGCTT Contig429009 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4969:47883_1:N:0:TAGCTT Contig135488 2215 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4416:49475_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9743:49924_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15152:50412_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20219:50833_1:N:0:TAGCTT Contig204061 718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8331:51157_1:N:0:TAGCTT Contig554278 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19317:51027_1:N:0:TAGCTT Contig41247 2548 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13825:51739_1:N:0:TAGCTT Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13725:52606_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5365:52773_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17407:52781_1:N:0:TAGCTT Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11277:53806_1:N:0:TAGCTT Contig71265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15606:54833_1:N:0:TAGCTT Contig116847 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8539:55068_1:N:0:TAGCTT Contig506623 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8115:55858_1:N:0:TAGCTT Contig405379 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8025:56028_1:N:0:TAGCTT Contig550486 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20692:56248_1:N:0:TAGCTT Contig66689 12385 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13286:56282_1:N:0:TAGCTT Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18816:56982_1:N:0:TAGCTT Contig17038 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:21261:57234_1:N:0:TAGTTT Contig31440 1718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:21195:58822_1:N:0:TAGCTT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7001:59586_1:N:0:TAGCTT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13371:60153_1:N:0:TAGCTT Contig585966 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5544:60353_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19325:60472_1:N:0:TAGCTT Contig14069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1187:60545_1:N:0:TAGCTT Contig368699 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6414:60537_1:N:0:TAGCTT Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10731:61113_1:N:0:TAGCTT Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12127:61272_1:N:0:TAGCTT Contig694092 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20915:61460_1:N:0:TAGCTT Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19139:61548_1:N:0:TAGCTT Contig498410 206 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8271:62647_1:N:0:TAGCTT Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14683:64393_1:N:0:TAGCTT Contig126609 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4308:66952_1:N:0:TAGCTT Contig197376 615 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17011:66973_1:N:0:TAGCTT Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10431:67027_1:N:0:TAGCTT Contig20845 3135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11855:67200_1:N:0:TAGCTT Contig578224 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18325:67089_1:N:0:TAGCTT Contig117682 2923 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2105:68241_1:N:0:TAGCTT Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12305:68063_1:N:0:TAGCTT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5787:68936_1:N:0:TAGCTT Contig79441 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12651:68893_1:N:0:TAGCTT Contig682568 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14667:69160_1:Y:0:TAGCTT Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4930:70529_1:N:0:TAGCTT Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8826:71496_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18507:71273_1:N:0:TAGCTT Contig164120 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17912:71609_1:N:0:TAGCTT Contig504623 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9242:72404_1:N:0:TAGCTT Contig170226 476 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3866:73197_1:N:0:TAGCTT Contig385306 172 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7617:73094_1:N:0:TAGCTT Contig321506 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15811:73165_1:N:0:TAGCTT Contig290005 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2380:73670_1:N:0:TAGCTT Contig23656 784 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15445:73571_1:Y:0:TAGCTT Contig570368 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2798:73853_1:N:0:TAGCTT Contig37026 12201 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2729:74116_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1322:74374_1:N:0:TAGCTT Contig421351 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7215:74370_1:N:0:TAGCTT Contig542597 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17819:75043_1:N:0:TAGCTT Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15252:75627_1:N:0:TAGCTT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18589:75782_1:N:0:TAGCTT Contig393887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18672:75978_1:N:0:TAGCTT Contig19272 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9442:76262_1:N:0:TAGCTT Contig165722 656 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9375:76666_1:N:0:TAGCTT Contig671570 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1562:77096_1:N:0:TAGCTT Contig509189 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14441:77359_1:N:0:TAGCTT Contig64114 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7809:77933_1:N:0:TAGCTT Contig680495 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12875:77800_1:N:0:TAGCTT Contig511090 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2695:78221_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17885:78232_1:N:0:TAGCTT Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17235:78692_1:N:0:TAGCTT Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16757:80034_1:N:0:TAGCTT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2922:81302_1:N:0:TAGCTT Contig346524 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4959:82122_1:Y:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12873:82224_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19691:82158_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10052:82988_1:Y:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6397:83432_1:N:0:TAGCTT Contig64114 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18036:83835_1:N:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11911:84225_1:N:0:TAGCTT Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3702:84408_1:N:0:TAGCTT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15685:84889_1:N:0:TAGCTT Contig253583 201 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1763:85269_1:N:0:TAGCTT Contig129402 1532 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9973:85941_1:N:0:TAGCTT Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15508:87375_1:N:0:TAGCTT Contig248693 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7322:87672_1:N:0:TAGCTT Contig176386 466 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18180:87880_1:N:0:TAGCTT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16792:88152_1:N:0:TAGCTT Contig34380 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2590:88308_1:N:0:TAGCTT Contig108128 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5375:88627_1:N:0:TAGCTT Contig178245 607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17457:89212_1:N:0:TAGCTT Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8585:90187_1:N:0:TAGCTT Contig416251 144 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5872:90258_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11458:90773_1:N:0:TAGCTT Contig157663 3161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19268:90841_1:N:0:TAGCTT Contig7715 7901 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2738:91367_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12174:91903_1:N:0:TAGCTT Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2927:92215_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6430:92006_1:N:0:TAGCTT Contig389486 235 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15875:92194_1:N:0:TAGCTT Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6420:95859_1:N:0:TAGCTT Contig49739 5164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11533:96319_1:N:0:TAGCTT Contig489528 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2100:97381_1:N:0:TAGCTT Contig504192 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14388:97266_1:N:0:TAGCTT Contig39805 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7643:97940_1:N:0:TAGCTT Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1934:98470_1:N:0:TAGCTT Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19912:98408_1:N:0:TAGCTT Contig598681 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11702:98734_1:N:0:TAGCTT Contig675203 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1914:99838_1:Y:0:TAGCTT Contig116787 4480 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14263:99881_1:N:0:TAGCTT Contig563731 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3586:100263_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4013:2145_1:N:0:TAGCTT Contig372066 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14349:2457_1:N:0:TAGCTT Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10287:2530_1:N:0:TAGCTT Contig606727 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17421:2742_1:N:0:TAGCTT Contig477766 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18038:3029_1:N:0:TAGCTT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16333:3385_1:N:0:TAGCTT Contig374586 1688 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19813:3272_1:Y:0:TAGCTT Contig446796 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13251:3619_1:N:0:TAGCTT Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17430:4028_1:N:0:TAGCTT Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7756:4658_1:N:0:TAGCTT Contig91898 1630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7104:5060_1:N:0:TAGCTT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16178:5749_1:N:0:TAGCTT Contig502333 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2343:5870_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4550:5794_1:N:0:TAGCTT Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5648:5818_1:Y:0:TAGCTT Contig102795 1154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9302:5772_1:N:0:TAGCTT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7979:6150_1:N:0:TAGCTT Contig141964 559 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10399:6208_1:Y:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20438:6991_1:Y:0:TAGCTT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15959:7886_1:N:0:TAGCTT Contig16344 2259 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10140:8008_1:Y:0:TAGCTT Contig537205 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16698:8055_1:N:0:TAGCTT Contig123990 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14085:8328_1:N:0:TAGCTT Contig516897 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6918:8834_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7967:9086_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16736:9022_1:N:0:TAGCTT Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16201:9736_1:N:0:TAGCTT Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9389:10568_1:N:0:TAGCTT Contig391218 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4908:10904_1:N:0:TAGCTT Contig13395 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11509:11431_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17629:12618_1:N:0:TAGCTT Contig597971 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16251:12860_1:N:0:TAGCTT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11812:13173_1:N:0:TAGCTT Contig124195 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19353:13086_1:N:0:TAGCTT Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13125:13458_1:N:0:TAGCTT Contig255461 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12344:14099_1:N:0:TAGCTT Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5546:14452_1:N:0:TAGCTT Contig521469 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7786:14416_1:Y:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6121:14542_1:N:0:TAGCTT Contig373202 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7695:15159_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3152:15288_1:N:0:TAGCTT Contig336741 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10074:15961_1:N:0:TAGCTT Contig467912 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4741:16155_1:N:0:TAGCTT Contig2131 20208 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14066:17043_1:N:0:TAGCTT Contig94812 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12844:17680_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4500:17961_1:N:0:TAGCTT Contig262974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7497:18327_1:N:0:AAGCTT Contig227664 644 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6581:18596_1:N:0:TAGCTT Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9590:18927_1:N:0:TAGCTT Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10553:20605_1:N:0:TAGCTT Contig35003 575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14036:21105_1:N:0:TAGCTT Contig390563 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8816:21318_1:N:0:TAGCTT Contig393062 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12274:21603_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9737:21996_1:Y:0:TAGCTT Contig18716 78248 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7217:22082_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18935:22464_1:N:0:TAGCTT Contig306813 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2016:22784_1:N:0:TAGCTT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8028:23838_1:N:0:TAGCTT Contig13974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7582:24313_1:N:0:TAGCTT Contig42930 20368 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10151:25403_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18854:25463_1:N:0:TAGCTT Contig93207 2023 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12361:25631_1:N:0:TAGCTT Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7194:26102_1:N:0:TAGCTT Contig182 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20343:26320_1:N:0:TAGCTT Contig15734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1426:27018_1:N:0:TAGCTT Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5499:27101_1:N:0:TAGCTT Contig43880 6705 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13645:27830_1:N:0:TAGCTT Contig657637 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2555:29954_1:N:0:TAGCTT Contig605568 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8782:30080_1:N:0:TAGCTT Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17323:30163_1:N:0:TAGCTT Contig414940 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3879:30786_1:N:0:TAGCTT Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5148:30818_1:N:0:TAGCTT Contig440302 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16903:30981_1:N:0:TAGCTT Contig165074 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11435:31212_1:N:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13577:31120_1:N:0:TAGCTT Contig605232 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13524:31646_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6640:32006_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8991:32020_1:N:0:TAGCTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11597:32651_1:N:0:TAGCTT Contig695568 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6350:32940_1:N:0:TAGCTT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6971:33294_1:N:0:TAGCTT Contig569904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10355:34386_1:N:0:TAGCTT Contig341757 214 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7927:34942_1:N:0:TAGCTT Contig51452 7799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19171:35704_1:N:0:TAGCTT Contig75355 2656 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15734:35874_1:N:0:TAGCTT Contig91898 1632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15909:35996_1:N:0:TAGCTT Contig576950 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4842:36256_1:N:0:TAGCTT Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6147:36387_1:N:0:TAGCTT Contig694656 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11366:36256_1:N:0:TAGCTT Contig453105 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2799:36740_1:N:0:TAGCTT Contig409460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9601:37017_1:N:0:TAGCTT Contig58165 2668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11779:37644_1:Y:0:TAGCTT Contig271925 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18730:37568_1:N:0:TAGCTT Contig180411 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8681:38089_1:N:0:TAGCTT Contig605232 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4546:38579_1:N:0:TAGCTT Contig610450 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11608:39134_1:N:0:TAGCTT Contig273735 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8798:41061_1:N:0:TAGCTT Contig125278 3050 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14635:41448_1:N:0:TAGCTT Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4322:42626_1:N:0:TAGCTT Contig498530 12153 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17755:42525_1:N:0:TAGCTT Contig485211 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3982:42820_1:N:0:TAGCTT Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12755:42889_1:N:0:TAGCTT Contig619524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20675:43569_1:N:0:TATCTT Contig536407 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4198:44178_1:N:0:TAGCTT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3534:44675_1:N:0:TAGCTT Contig419815 152 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20063:44690_1:N:0:TAGCTT Contig272891 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2414:44832_1:N:0:TAGCTT Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16210:45514_1:Y:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20161:45849_1:N:0:TAGCTT Contig136795 9520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19933:46242_1:Y:0:TAGCTT Contig242785 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8508:46488_1:N:0:TAGCTT Contig565153 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5997:46587_1:N:0:TAGCTT Contig474092 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12260:47314_1:N:0:TAGCTT Contig125278 3050 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18389:47284_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20421:47522_1:N:0:TAGCTT Contig206689 1072 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18197:48052_1:N:0:TAGCTT Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20424:48475_1:N:0:TAGCTT Contig357296 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8985:49215_1:N:0:TAGCTT Contig45803 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2758:49571_1:N:0:TAGCTT Contig79341 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10111:49712_1:Y:0:TAGCTT Contig87386 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12034:49580_1:N:0:TAGCTT Contig364897 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13243:49555_1:N:0:TAGCTT Contig562041 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19588:49928_1:N:0:TAGCTT Contig1637 14982 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6115:50349_1:N:0:TAGCTT Contig352956 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15203:50497_1:N:0:TAGCTT Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6895:50683_1:N:0:TAGCTT Contig31169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8471:50557_1:N:0:TAGCTT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15605:51682_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10042:51932_1:N:0:TAGCTT Contig121388 2737 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2434:53706_1:N:0:TAGCTT Contig212284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11264:53526_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4718:54296_1:N:0:TAGCTT Contig398227 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15531:54269_1:N:0:TAGCTT Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17032:54588_1:N:0:TAGCTT Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17479:55018_1:N:0:TAGCTT Contig610450 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13460:55307_1:N:0:TAGCTT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17121:55914_1:N:0:TAGCTT Contig515495 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15002:56294_1:N:0:TAGCTT Contig383229 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7705:56681_1:N:0:TAGCTT Contig608794 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8373:56529_1:N:0:TAGCTT Contig476118 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16761:56949_1:N:0:TAGCTT Contig19768 7470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9748:57461_1:N:0:TAGCTT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19105:57420_1:N:0:TAGCTT Contig391428 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1784:57836_1:N:0:TAGCTT Contig344467 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16243:57985_1:Y:0:TAGCTT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16102:58215_1:N:0:TAGCTT Contig197166 543 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2140:59446_1:N:0:TAGCTT Contig687242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14548:59350_1:N:0:TAGCTT Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13599:59967_1:N:0:TAGCTT Contig57360 6454 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5733:60350_1:N:0:TAGCTT Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12845:60333_1:Y:0:TAGCTT Contig99098 5112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15713:60596_1:N:0:TAGCTT Contig252813 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12520:61172_1:N:0:TAGCTT Contig550486 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5604:61255_1:N:0:TAGCTT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12628:61728_1:N:0:TAGTTT Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18738:61585_1:N:0:TAGCTT Contig666842 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14052:61840_1:N:0:TAGCTT Contig45873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9740:62369_1:N:0:TAGCTT Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10312:63199_1:N:0:TAGCTT Contig211686 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13327:63305_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13319:63754_1:N:0:TAGCTT Contig133813 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20829:63859_1:N:0:TAGCTT Contig126442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21090:63869_1:Y:0:TAGCTT Contig448194 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15971:64891_1:N:0:TAGCTT Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10001:65333_1:N:0:TAGCTT Contig178294 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16768:66527_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21275:66541_1:N:0:TAGCTT Contig521469 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12227:66925_1:N:0:TAGCTT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16694:67056_1:Y:0:TAGCTT Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3418:67767_1:N:0:TAGCTT Contig130287 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2180:68310_1:Y:0:TAGCTT Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18011:68264_1:N:0:TAGCTT Contig76929 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5293:69363_1:N:0:TAGCTT Contig507354 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1371:69962_1:N:0:TAGCTT Contig693511 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21134:70602_1:Y:0:TATCTT Contig426705 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11938:70840_1:N:0:TAGCTT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15208:71169_1:N:0:TAGCTT Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2319:71738_1:N:0:TAGCTT Contig191191 581 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11418:71630_1:N:0:TAGCTT Contig344467 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9121:71788_1:N:0:TAGCTT Contig130068 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8804:72553_1:N:0:TAGCTT Contig674522 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13639:72613_1:N:0:TAGCTT Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6696:72889_1:N:0:TAGCTT Contig318385 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2357:73187_1:N:0:TAGCTT Contig403649 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18356:73425_1:N:0:TAGCTT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3195:73871_1:N:0:TAGCTT Contig281767 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13054:73845_1:N:0:TAGCTT Contig248693 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17671:73750_1:N:0:TAGCTT Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1633:74054_1:N:0:TAGCTT Contig556875 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7391:74482_1:N:0:TAGCTT Contig445743 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3428:74505_1:N:0:TAGCTT Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9588:74684_1:N:0:TAGCTT Contig125278 3050 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18984:74851_1:N:0:TAGCTT Contig160959 1176 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 649584 (64.96%) aligned 0 times 134594 (13.46%) aligned exactly 1 time 215822 (21.58%) aligned >1 times 35.04% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 645051 (64.51%) aligned 0 times 138648 (13.86%) aligned exactly 1 time 216301 (21.63%) aligned >1 times 35.49% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 650725 (65.07%) aligned 0 times 134715 (13.47%) aligned exactly 1 time 214560 (21.46%) aligned >1 times 34.93% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 643786 (64.38%) aligned 0 times 137982 (13.80%) aligned exactly 1 time 218232 (21.82%) aligned >1 times 35.62% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_10_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_10_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 349287 Mapping efficiency: 34.9% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2181648 Total methylated C's in CpG context: 342902 Total methylated C's in CHG context: 9337 Total methylated C's in CHH context: 101372 Total methylated C's in Unknown context: 81 Total unmethylated C's in CpG context: 59857 Total unmethylated C's in CHG context: 471881 Total unmethylated C's in CHH context: 1196299 Total unmethylated C's in Unknown context: 373 C methylated in CpG context: 85.1% C methylated in CHG context: 1.9% C methylated in CHH context: 7.8% C methylated in Unknown context (CN or CHN): 17.8% Bismark completed in 0d 3h 13m 42s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_11_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_11_s456_trimmed.fq.gz to zr1394_11_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_11_s456_trimmed.fq.gz to zr1394_11_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_11_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_11_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_11_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_11_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1243:2134_1:N:0:GGCTAC 4 * 0 0 * * 0 0 TATTGATATTATAATTATTTTTTTTTATAT >> Writing bisulfite mapping results to zr1394_11_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_11_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1473:2216_1:Y:0:GGCTAC Contig681402 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14255:6719_1:Y:0:GGCTAC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19966:6705_1:Y:0:GGCTAC Contig399597 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16216:7029_1:N:0:GGCTAC Contig566515 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5576:7640_1:N:0:GGCTAC Contig69363 2722 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19087:8223_1:N:0:GGCTAC Contig166416 644 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11492:8353_1:N:0:GGCTAC Contig462124 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7749:8652_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2851:10379_1:N:0:GGCTAC Contig221661 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10899:11457_1:N:0:GGCTAC Contig181140 1032 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3090:11743_1:N:0:GGCTAC Contig79433 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7036:12377_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10769:12732_1:N:0:GGCTAC Contig373054 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4626:12879_1:N:0:GGCTAC Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19915:12855_1:N:0:GGCTAC Contig669933 180 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4504:13410_1:N:0:GGCTAC Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3861:14425_1:N:0:AGCTAC Contig303333 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19317:14571_1:N:0:GGCTAC Contig428369 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17063:14837_1:N:0:GGCTAC Contig505390 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6078:15169_1:Y:0:TGCTAC Contig34874 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11069:15196_1:N:0:GGCTAC Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12945:15123_1:N:0:GGCTAC Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15830:15364_1:N:0:GGCTAC Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9503:15628_1:N:0:GGCTAC Contig615498 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3958:16179_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12643:16097_1:N:0:GGCTAC Contig456483 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4927:16578_1:N:0:GGCTAC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6909:16606_1:N:0:GGCTAC Contig387620 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14913:16592_1:N:0:GGCTAC Contig628534 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8463:18878_1:Y:0:GGCTAC Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1418:20194_1:N:0:TGCTAC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5529:20081_1:N:0:GGCTAC Contig274743 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11353:21033_1:Y:0:AGCTAC Contig655755 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9279:22782_1:N:0:GGCTAC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18631:23762_1:N:0:GGCTAC Contig278108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2516:24779_1:N:0:GGCTCC Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9683:25654_1:N:0:GGCTAC Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8671:26031_1:Y:0:GGCTAC Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7305:26540_1:N:0:GGCTAC Contig92262 5016 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14540:26740_1:N:0:GGCTAC Contig506709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3877:27177_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17510:28119_1:Y:0:GGCTAC Contig96316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5548:28305_1:N:0:GGCTAC Contig145976 724 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17642:28566_1:N:0:GGCTAC Contig523701 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2974:28971_1:N:0:GGCTAC Contig186395 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2873:33520_1:N:0:GGCTAC Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16139:34034_1:N:0:GGCTAC Contig201671 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16240:34625_1:N:0:GGCTAC Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15455:36985_1:N:0:GGCTAC Contig503712 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3774:37217_1:Y:0:GGCTAC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17041:37255_1:Y:0:GGCTCC Contig19434 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3352:37711_1:N:0:GGCTAC Contig87676 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14957:39007_1:N:0:GGCTAC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6611:40216_1:N:0:GGCTAC Contig197376 616 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20309:40394_1:N:0:AGCTAC Contig515495 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19383:41248_1:Y:0:GGCTAC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6499:41408_1:N:0:GGCTAC Contig450378 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6353:41646_1:N:0:GGCTAC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15182:41676_1:N:0:GGCTAC Contig654316 144 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15326:41616_1:N:0:GGCTAC Contig403272 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3332:42051_1:N:0:GGCTAC Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4279:42719_1:Y:0:GGCTAC Contig538344 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6400:42763_1:N:0:GGCTAC Contig72001 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15588:43324_1:N:0:GGCTAC Contig180297 484 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16245:43596_1:Y:0:GGCTAC Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17894:43824_1:N:0:GGCTAC Contig651489 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8880:44827_1:N:0:GGCTAC Contig137637 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16280:44983_1:N:0:GGCTAC Contig330842 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16575:45479_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18719:45852_1:N:0:GGCTAC Contig135488 2214 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20505:45981_1:N:0:GGCTAC Contig178294 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10228:46910_1:N:0:GGCTAC Contig140590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3674:47047_1:N:0:GGCTAC Contig150484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7341:47633_1:N:0:GGCTAC Contig579812 703 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19578:47959_1:N:0:GGCTAC Contig275571 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18132:48505_1:N:0:GGCTAC Contig181967 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4239:49163_1:N:0:GGCTAC Contig170477 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10178:49410_1:N:0:GGCTAC Contig690916 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9871:49501_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19850:50302_1:Y:0:GGCTAT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19950:50952_1:N:0:GGCTAC Contig367750 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13140:52059_1:N:0:GGCTAC Contig193909 282 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15738:52267_1:N:0:AGCTAC Contig349057 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4041:52573_1:N:0:GGCTAC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10071:53140_1:N:0:GGCTAC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18235:53280_1:N:0:GGCTAC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3109:54060_1:N:0:GGCTAC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4442:54399_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20345:54691_1:N:0:GGCTAC Contig350296 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7834:54763_1:N:0:GGCTAC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10949:56304_1:N:0:GGCTAC Contig451267 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21022:58143_1:Y:0:GGCTAC Contig542597 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7185:60437_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16313:60463_1:N:0:GGCTAC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18858:60653_1:N:0:GGCTAC Contig203925 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3026:61346_1:N:0:GGCTAC Contig12186 348 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7738:61743_1:N:0:AGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2317:62097_1:N:0:GGCTAC Contig418344 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18198:62421_1:Y:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14122:62852_1:N:0:GGCTAC Contig691198 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6148:63180_1:N:0:GGCTAC Contig26806 9431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8266:63911_1:Y:0:GGCTAC Contig255417 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7168:64298_1:N:0:GGCTAC Contig670510 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16954:65137_1:N:0:GGCTAC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2822:66469_1:N:0:GGCTAC Contig314563 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16649:66713_1:N:0:GGCTAC Contig695733 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16030:66780_1:N:0:AGCTAC Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12923:67034_1:N:0:GGCTAC Contig216334 914 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15425:70943_1:N:0:GGCTAC Contig373202 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12288:71526_1:N:0:GGCTAC Contig509943 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19592:71903_1:N:0:GGCTAC Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6411:72419_1:N:0:GGCTAC Contig691454 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11862:73144_1:N:0:GTCTAC Contig130735 14296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4815:74051_1:N:0:GGCTAC Contig388199 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2318:74991_1:N:0:GGCTAC Contig356374 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15367:77877_1:N:0:GGCTAC Contig663678 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12707:78320_1:N:0:AGCTAC Contig49739 5163 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14016:78658_1:N:0:GGCTAC Contig196754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17559:78564_1:N:0:GGCTAC Contig96316 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4285:79759_1:N:0:GGCTAC Contig467912 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15987:79779_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16173:80107_1:N:0:GGCTAC Contig433015 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20010:80898_1:N:0:GGCTAC Contig151131 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5468:81812_1:N:0:GGCTAC Contig16985 786 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18195:81952_1:N:0:GGCTAC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15673:83155_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2881:84127_1:N:0:GGCTAC Contig100175 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20676:85693_1:N:0:GGCTAC Contig294033 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15398:85811_1:N:0:GGCTAC Contig33090 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5789:87642_1:N:0:GGCTAC Contig60600 19000 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19333:87887_1:N:0:GGCTAC Contig22621 6888 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6307:88096_1:N:0:GGCTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7018:88906_1:N:0:GGCTAC Contig647227 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16909:89738_1:N:0:GGCTAC Contig9595 3523 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13999:89764_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17065:89989_1:N:0:GGCTAC Contig175206 744 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5844:90578_1:N:0:GGCTAC Contig31231 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6343:90693_1:N:0:GGCTAC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16141:92035_1:N:0:GGCTAC Contig312918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3526:93898_1:N:0:GGCTAC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1720:94175_1:Y:0:AGCTAC Contig413700 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17305:94782_1:N:0:GGCTAC Contig363728 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19156:94943_1:N:0:GGCTAC Contig323794 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17983:95034_1:N:0:GGCTAC Contig89673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17862:95064_1:N:0:GGCTAC Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3941:95490_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7746:95350_1:N:0:GGCTAC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12807:95867_1:N:0:GGCTAC Contig230719 264 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15094:96120_1:N:0:GGCTAC Contig8270 1000 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19420:97256_1:N:0:GGCTAC Contig169258 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20203:97713_1:N:0:GGCTAC Contig74632 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20599:98702_1:N:0:GGCTAC Contig662329 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5453:99049_1:N:0:GGCTAC Contig231406 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18330:99151_1:N:0:GGCTAC Contig479741 236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9523:99467_1:N:0:GGCTAC Contig523940 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8179:2765_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19413:3274_1:N:0:GGCTAC Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21273:3752_1:N:0:GGCTAC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15845:4112_1:N:0:AGCTAC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6362:4611_1:N:0:GGCTAC Contig341961 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4431:4767_1:N:0:GGCTAC Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13374:5497_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9360:5751_1:Y:0:GGCTAA Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5584:7365_1:N:0:AGCTAC Contig307182 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13188:7436_1:N:0:GGCTAC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16630:7855_1:N:0:AGCTAC Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20713:8945_1:Y:0:TGCTAC Contig536501 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16706:9015_1:N:0:GGCTAC Contig6672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4070:9291_1:N:0:GGCTAC Contig268594 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13662:10011_1:N:0:GGCTAC Contig675316 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19726:10107_1:N:0:GGCTAC Contig613909 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9085:10778_1:N:0:GGCTAC Contig512524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8426:11457_1:N:0:GGCTAC Contig21899 615 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5618:11504_1:N:0:GGCTAC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10474:12386_1:N:0:GGCTAC Contig119413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12638:12602_1:N:0:GGCTAC Contig96628 1442 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2350:13170_1:N:0:GGCTAC Contig105161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20405:14063_1:N:0:GGCTAC Contig215795 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18188:14449_1:N:0:GGCTAC Contig89673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1792:14533_1:N:0:GGCTAC Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12850:19801_1:N:0:GGCTAC Contig268133 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15135:19979_1:N:0:GGCTAC Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1769:20503_1:N:0:GGCTAC Contig464396 4661 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3927:20993_1:N:0:GGCTAC Contig542597 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5036:21025_1:N:0:GGCTAC Contig187358 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4751:21851_1:N:0:GGCTAC Contig150257 2534 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12656:21880_1:N:0:AGCTAC Contig36268 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14010:22487_1:N:0:AGCTAC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17797:23220_1:N:0:GGCTAC Contig81159 3116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18134:23238_1:N:0:GGCTAC Contig534659 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20384:23883_1:N:0:GGCTAC Contig81175 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5239:24136_1:N:0:GGCTAC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13092:24428_1:N:0:GGCTAC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14029:25132_1:N:0:GGCTAC Contig523531 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17470:25881_1:N:0:GGCTAC Contig157330 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20281:25886_1:N:0:AGCTAC Contig179829 4463 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20994:25806_1:N:0:GGCTAC Contig134311 1416 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18033:26115_1:N:0:GGCTAC Contig528434 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15728:26408_1:N:0:AGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3585:26636_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15951:26971_1:N:0:GGCTAC Contig687180 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14288:27145_1:N:0:GGCTAC Contig258684 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20758:29782_1:N:0:GGCTAC Contig585564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11798:30475_1:N:0:GGCTAC Contig279960 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14229:31739_1:N:0:GGCTAC Contig25534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19798:31656_1:N:0:GGCTAC Contig658316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14848:33473_1:N:0:GGCTAC Contig504192 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18092:33570_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7229:33793_1:N:0:GGCTAC Contig212087 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15530:35584_1:N:0:GGCTAC Contig411065 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14001:36950_1:N:0:GGCTAC Contig165179 511 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1698:37143_1:N:0:GGCTAC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10717:37293_1:N:0:GGCTAC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4149:37516_1:N:0:GGCTAC Contig649058 306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5358:37784_1:N:0:GGCTAC Contig84439 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8559:37860_1:N:0:GGCTAC Contig181069 784 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20890:39062_1:N:0:GGCTAC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18519:41164_1:N:0:GGCTAC Contig133832 670 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8083:42338_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21130:42333_1:N:0:GGCTAC Contig596500 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7006:44283_1:N:0:GGCTAC Contig386907 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17592:45752_1:N:0:AGCTAC Contig205919 461 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8559:48158_1:Y:0:GGCTAC Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14563:48840_1:Y:0:GGCTAC Contig233955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12149:49774_1:N:0:GGCTAC Contig492106 459 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20077:50073_1:N:0:GGCTAC Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2055:50393_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3129:50986_1:N:0:GGCTAC Contig392428 991 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4907:51636_1:N:0:GGCTAC Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20821:51692_1:Y:0:GGCTAC Contig287021 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9456:51830_1:N:0:TGCTAC Contig397503 186 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3539:52335_1:N:0:GGCTAC Contig610493 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1822:53945_1:N:0:AGCTAC Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7888:54406_1:N:0:GGCTAC Contig589103 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6920:54565_1:N:0:GGCTAC Contig195422 358 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4074:54955_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9272:55365_1:N:0:GGCTAC Contig20834 2171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4413:56045_1:N:0:GGCTAC Contig208806 730 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5138:56852_1:N:0:AGCTAC Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4163:57551_1:N:0:GGCTAC Contig201334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7747:57659_1:N:0:GGCTAC Contig165074 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16481:57657_1:N:0:GGCTAC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1186:60942_1:Y:0:GGCTAC Contig553625 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2878:60763_1:N:0:GGCTAC Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13214:62147_1:N:0:GGCTAC Contig564182 119 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18452:62033_1:N:0:GGCTAC Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7566:62388_1:N:0:AGCTAC Contig496352 375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11421:64346_1:N:0:GGCTAC Contig275630 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6550:64622_1:N:0:GGCTAC Contig171321 393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21035:65695_1:N:0:GGCTAC Contig126695 3026 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10430:66245_1:N:0:AGCTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6288:66789_1:N:0:GGCTAC Contig672031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3602:67640_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15332:68000_1:N:0:GGCTAC Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12871:68537_1:N:0:GGCTAC Contig260003 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13540:68701_1:N:0:GGCTAC Contig205762 9561 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9511:68816_1:N:0:GGCTAC Contig606727 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13857:69228_1:N:0:GGCTAC Contig328221 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6623:70704_1:N:0:GGCTAC Contig337260 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3145:71092_1:N:0:GGCTAC Contig48907 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18728:71061_1:N:0:GGCTAC Contig607800 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15637:71415_1:N:0:GGCTAC Contig142 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4003:71503_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17497:71824_1:N:0:GGCTAC Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4127:72021_1:N:0:GGCTAC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20425:72083_1:N:0:GGCTAC Contig268133 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9795:72528_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3823:72995_1:N:0:GGCTAC Contig235004 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17951:72793_1:N:0:GGCTAC Contig290008 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7320:73074_1:N:0:GGCTAC Contig279822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9405:73533_1:N:0:GGCTAC Contig36226 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1447:73989_1:N:0:GGCTAC Contig645560 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10399:73916_1:N:0:AGCTAC Contig677293 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14519:75467_1:N:0:GGCTAC Contig585966 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12634:75605_1:N:0:GGCTAC Contig219714 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13833:75738_1:N:0:GGCTAC Contig86774 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4948:75822_1:N:0:GGCTAC Contig145976 724 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2735:76334_1:Y:0:GGCTAC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19076:76441_1:Y:0:GGCTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1189:79215_1:N:0:GGCTAC Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17184:79019_1:N:0:GGCTAC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8624:79910_1:N:0:GGCTAC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9337:82542_1:N:0:GGCTAC Contig393446 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15932:82793_1:N:0:GGCTAC Contig384278 300 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15860:84073_1:N:0:GGCTAC Contig195669 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16569:84118_1:N:0:AGCTAC Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7293:85688_1:N:0:GGCTAC Contig622176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7833:85733_1:N:0:GGCTAC Contig167723 9214 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19859:86173_1:N:0:GGCTAC Contig51323 6097 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13929:86829_1:N:0:GGCTAC Contig50387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11555:88167_1:N:0:GGCTAC Contig523940 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18457:90878_1:N:0:GGCTAC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9017:91336_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5966:91794_1:N:0:GGCTAC Contig258684 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10927:92786_1:N:0:GGCTAC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1831:93520_1:N:0:GGCTAC Contig429948 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12925:93529_1:N:0:GGCTAC Contig154364 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16981:93628_1:N:0:GGCTAC Contig623426 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14911:93950_1:N:0:GGCTAC Contig610835 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10661:94252_1:N:0:GGCTAC Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7713:95174_1:Y:0:GGCTAC Contig597668 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14319:95760_1:N:0:GGCTAC Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2786:96561_1:N:0:GGCTAC Contig13974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16181:97722_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3143:97990_1:N:0:GGCTAC Contig76988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9459:98116_1:N:0:GGCTAC Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11359:99385_1:N:0:GGCTAC Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9554:99590_1:N:0:GGCTAC Contig504093 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19704:3880_1:N:0:GGCTAC Contig358118 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15655:5420_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15928:5302_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11384:6149_1:N:0:GGCTTC Contig63641 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17805:6355_1:N:0:GACTAC Contig424212 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15840:6544_1:N:0:GGCTAC Contig185168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11724:8457_1:N:0:GGCTAC Contig134863 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5784:9351_1:N:0:GGCTAC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20675:10424_1:Y:0:GACTAC Contig51781 8165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11141:10539_1:N:0:GGCTAC Contig166218 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14326:10585_1:Y:0:TGCTAC Contig558169 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10490:11143_1:N:0:GGCTAC Contig65920 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13200:11063_1:N:0:GGCTAC Contig130628 1632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4527:11264_1:N:0:GGCTAC Contig659727 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2798:11738_1:N:0:AGCTAC Contig658743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5479:11669_1:N:0:GGCTAC Contig332375 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11191:11513_1:N:0:GGCTAC Contig87508 2148 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9335:12589_1:N:0:GGCTAC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5056:12750_1:N:0:GGCTAC Contig349599 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14786:12767_1:N:0:GGCTAC Contig289013 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4696:13365_1:N:0:AGCTAC Contig445420 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17434:14080_1:N:0:AGCTAC Contig185327 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10381:14808_1:N:0:GGCTAC Contig211617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10654:15888_1:N:0:GGCTAC Contig157194 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9523:16069_1:N:0:GGCTAC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12901:16546_1:N:0:GGCTAC Contig603695 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10552:16976_1:N:0:GGCTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1569:17157_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13529:18807_1:N:0:GGCTAC Contig106189 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13566:20148_1:N:0:GGCTAC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17610:20008_1:N:0:GGCTAC Contig200556 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16502:20507_1:N:0:GGCTAC Contig660848 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20020:21079_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8002:21927_1:N:0:GGCTAC Contig496352 373 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6433:22091_1:N:0:GGCTAC Contig135382 1912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12088:24230_1:N:0:AGCTAC Contig4393 6480 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16578:24175_1:N:0:GGCTAC Contig354446 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13069:25155_1:N:0:GGCTAC Contig120352 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12613:25373_1:N:0:GGCTAC Contig276556 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7141:25578_1:N:0:GGCTAC Contig7715 7901 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17046:25525_1:Y:0:GGCTAC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4351:25835_1:N:0:GGCTAC Contig5906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12750:26193_1:N:0:GGCTAC Contig326333 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14093:26291_1:N:0:GGCTAC Contig433146 646 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2597:26615_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3862:26584_1:N:0:GGCTAC Contig114989 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12062:26540_1:N:0:GGCTAC Contig479741 236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13468:27845_1:N:0:GGCTAC Contig169127 2442 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2433:29673_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16857:30206_1:N:0:GGCTAC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2537:30654_1:N:0:GGCTAC Contig645560 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13413:30641_1:N:0:GGCTAC Contig61033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13469:31082_1:N:0:GGCTAC Contig505463 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14460:33350_1:N:0:GGCTAC Contig213627 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14964:33953_1:N:0:GGCTAC Contig86532 6022 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12528:35021_1:N:0:GGCTAC Contig262974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3188:35353_1:N:0:GGCTAC Contig306106 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7824:37089_1:N:0:GGCTAC Contig666202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21083:38302_1:N:0:GGCTAC Contig600751 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10334:38704_1:N:0:GGCTAC Contig480782 204 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4647:39592_1:Y:0:GACTAC Contig471647 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16912:40558_1:N:0:GACTAC Contig61033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13565:41075_1:N:0:GGCTAC Contig355919 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7586:41981_1:N:0:GGCTAC Contig298422 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3297:42059_1:N:0:GGCTAC Contig157385 1105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5431:42033_1:N:0:GGCTAC Contig192366 419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11561:42777_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7789:43116_1:N:0:GGCTAC Contig201334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14881:43187_1:N:0:AGCTAC Contig534659 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7248:45377_1:N:0:GGCTAC Contig54916 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10188:45292_1:N:0:GGCTAC Contig404990 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19641:47911_1:N:0:GGCTAC Contig113038 1089 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18743:48707_1:N:0:AGCTAC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7881:49461_1:N:0:GGCTAC Contig186481 2339 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8391:50087_1:N:0:GGCTAC Contig197376 616 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13724:51709_1:N:0:GGCTAC Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1688:52587_1:N:0:AGCTAC Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15450:53428_1:N:0:GGCTAC Contig596479 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1765:53518_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18042:54210_1:N:0:GGCTAC Contig667045 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20033:54607_1:N:0:GGCTAC Contig201025 1568 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20584:54826_1:N:0:GGCTAC Contig89937 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6708:55041_1:Y:0:GGCTAC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9094:55646_1:N:0:GGCTAC Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7455:55863_1:N:0:GGCTAC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11776:56379_1:N:0:GGCTAC Contig86685 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15697:56294_1:N:0:GGCTAC Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5521:57279_1:N:0:GGCTAC Contig504645 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10816:57847_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4379:58077_1:N:0:GGCTAC Contig403699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18159:58376_1:N:0:AGCTAC Contig17805 256 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12357:59061_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9846:59352_1:N:0:GGCTAC Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13833:59563_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14612:61250_1:N:0:GGCTAC Contig189307 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6675:62371_1:N:0:GGCTAC Contig602181 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4883:63816_1:N:0:GGCTAC Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16867:64984_1:N:0:GGCCAC Contig465403 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3908:65489_1:N:0:GGCTAC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12563:66106_1:N:0:GGCTAC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7746:66683_1:N:0:GGCTAC Contig493006 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8876:66521_1:N:0:GGCTAC Contig483460 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15258:66506_1:N:0:GGCTAC Contig46816 8306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16308:68126_1:N:0:GGCTAC Contig260692 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17237:68219_1:N:0:GGCTAC Contig294813 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13679:68438_1:N:0:GGCTAC Contig27277 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20069:68535_1:N:0:GGCTAC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6674:68911_1:N:0:GGCTAC Contig165074 805 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1500:70605_1:N:0:GGCTAC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13033:70677_1:N:0:AGCTAC Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14178:71272_1:N:0:GGCTAC Contig200556 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16279:72231_1:Y:0:GCCTAC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14855:72361_1:N:0:GGCTAC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10229:73364_1:N:0:GGCTAC Contig9115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18712:74728_1:N:0:GGCTAC Contig673444 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5413:74871_1:N:0:GGCTAC Contig290 36267 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20209:75193_1:N:0:GGCTAC Contig476275 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13267:76171_1:N:0:GGCTAC Contig290 36268 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13762:76857_1:N:0:GGCTAC Contig307270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10213:77492_1:N:0:GGCTAC Contig291999 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4502:78503_1:N:0:GGCTAC Contig284213 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14396:78735_1:N:0:GGCTAC Contig619524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8203:79105_1:N:0:GGCTAC Contig31231 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4371:79729_1:N:0:GGCTAC Contig281104 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5056:79708_1:N:0:AGCTAC Contig40175 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15620:79883_1:N:0:GGCTAC Contig93712 7694 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5888:80517_1:N:0:GGCTAC Contig358108 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14807:80521_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8971:81067_1:N:0:GGCTAC Contig361754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14554:81708_1:N:0:GGCTAC Contig416040 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14535:84086_1:Y:0:GGCTAC Contig131159 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5071:84725_1:N:0:GGCTAC Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9976:84678_1:N:0:GGCTAC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14187:86419_1:N:0:AGCTAC Contig542597 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9472:87126_1:N:0:GGCTAC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20574:88629_1:N:0:GGCTAC Contig160772 1045 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18862:88850_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7667:89112_1:N:0:GGCTAC Contig409887 217 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2354:89726_1:N:0:GGCTAC Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12725:90801_1:N:0:AGCTAC Contig452904 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19867:90956_1:Y:0:TGCTAC Contig163913 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2512:91187_1:N:0:GGCTAC Contig538057 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9110:91590_1:N:0:GGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14997:92680_1:N:0:GGCTAC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18087:92679_1:N:0:GGCTAC Contig242743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4387:94495_1:N:0:GGCTAC Contig235004 648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17506:94614_1:N:0:AGCTAC Contig672031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3435:95218_1:N:0:AGCTAC Contig563479 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5305:95163_1:N:0:GGCTAC Contig392164 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19956:95199_1:N:0:GGCTAC Contig97019 11513 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11632:95957_1:N:0:AGCTAC Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17639:96088_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14689:96618_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1663:96922_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1899:97830_1:N:0:AGCTAC Contig496057 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1856:98165_1:N:0:GGCTAC Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11713:98124_1:N:0:GGCTAC Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20025:99664_1:Y:0:AGCTAC Contig455761 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12148:3308_1:N:0:GGCTAC Contig53330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3869:3628_1:Y:0:GGCTAC Contig365277 168 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10249:4184_1:N:0:GGCTAC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8873:4958_1:N:0:GGCTAC Contig110763 5595 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5353:5256_1:N:0:GGCTAC Contig34051 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1327:5841_1:N:0:GGCTAC Contig87508 2148 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4373:6979_1:N:0:GGCTAC Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3491:7919_1:N:0:GGCTAC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11852:7985_1:N:0:GGCTAC Contig177090 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15535:8726_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21251:8622_1:N:0:AGCTAC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2058:9356_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5074:9646_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13015:10062_1:N:0:GGCTAC Contig49739 5162 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16647:11278_1:N:0:GGCTAC Contig137637 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1734:11670_1:N:0:GGCTAC Contig367562 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13256:11774_1:N:0:GGCTAC Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4764:13577_1:N:0:AGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4352:15143_1:N:0:GGCTAC Contig382328 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8160:16182_1:N:0:GGCTAC Contig669750 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13396:16112_1:N:0:GGCTAC Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7034:16472_1:N:0:GGCTAC Contig537805 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17015:16798_1:N:0:GGCTAT Contig58063 9823 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16979:17005_1:N:0:AGCTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1623:17591_1:N:0:GGCTAC Contig55734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4115:17771_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15554:17762_1:N:0:GGCTAC Contig9115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2605:18397_1:N:0:AGCTAC Contig22621 6888 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7378:18299_1:N:0:GGCTAC Contig189406 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14279:18433_1:N:0:GGCTAC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17479:19404_1:N:0:GGCTAC Contig327359 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13956:20000_1:N:0:GGCTAC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17443:21416_1:N:0:AGCTAC Contig335596 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3103:23302_1:N:0:GGCTAC Contig588319 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3334:23259_1:N:0:GGCTAC Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3977:23366_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14906:23794_1:N:0:GGCTAC Contig86766 2314 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6992:24599_1:N:0:GGCTAC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14881:25578_1:N:0:GGCTAC Contig3337 17934 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10920:26476_1:Y:0:GGCTAC Contig12396 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12970:26423_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16832:27364_1:N:0:AGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16153:27827_1:N:0:GGCTAC Contig87508 2149 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9470:28151_1:N:0:GGCTAC Contig141964 560 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11492:30465_1:N:0:GGCTAC Contig343599 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5946:30799_1:N:0:GGCTAC Contig184372 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15380:31982_1:N:0:AGCTAC Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15546:32042_1:N:0:GGCTAC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17643:32036_1:N:0:GGCTAC Contig3611 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8633:32395_1:N:0:GGCTAC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19885:32254_1:N:0:GGCTAC Contig235817 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4993:36675_1:N:0:GGCTAC Contig622176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9568:37397_1:N:0:AGCTAC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2419:41183_1:N:0:GGCTAC Contig79991 2342 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8700:41009_1:N:0:GGCTAC Contig650014 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2299:43378_1:N:0:GGCTAC Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16783:45193_1:Y:0:GTCTAC Contig172404 583 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11501:45319_1:N:0:GGCTAC Contig124133 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8055:46200_1:N:0:GGCTAC Contig312699 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19608:47427_1:N:0:GGCTAC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1574:48766_1:N:0:GGCTAC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1616:49224_1:N:0:GGCTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17424:49306_1:Y:0:AGCTAC Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12827:50624_1:N:0:GGCTAC Contig180540 879 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18851:50681_1:N:0:GGCTAC Contig172770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9738:53050_1:N:0:GGCTAC Contig289455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20287:53362_1:Y:0:GGCTAC Contig40531 13666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13228:55442_1:N:0:GGCTAC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17115:56784_1:N:0:AGCTAC Contig672031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6439:57171_1:N:0:GGCTAC Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9279:57232_1:N:0:GGCTAC Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11272:57164_1:N:0:GGCTAC Contig590449 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6225:58044_1:N:0:GGCTAC Contig635415 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19973:58163_1:N:0:GGCTAC Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7417:58551_1:N:0:GGCTAC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14981:59085_1:N:0:GGCTAC Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5608:59333_1:N:0:GGCTAC Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20527:59661_1:N:0:GGCTAC Contig213364 719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4266:59793_1:N:0:GGCTAC Contig662194 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16460:60296_1:N:0:GGCTAC Contig606186 232 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5623:61595_1:N:0:GGCTAC Contig23681 386 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1221:61871_1:N:0:GGCTAC Contig98835 1382 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19236:63472_1:N:0:GGCTAC Contig426367 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17672:63845_1:N:0:GGCTAC Contig552550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12045:64077_1:N:0:GGCTAC Contig513173 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14716:64204_1:N:0:GGCTAC Contig149517 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8661:65260_1:N:0:GGCTAC Contig146939 2196 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10713:66321_1:N:0:GGCTAC Contig347159 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1239:66908_1:Y:0:AGCTAC Contig237630 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2373:67411_1:N:0:GGCTAC Contig418820 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6478:68089_1:N:0:GGCTAC Contig451107 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8184:68303_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13301:69251_1:N:0:GGCTAC Contig255417 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8287:69630_1:N:0:GGCTAC Contig504192 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4016:70417_1:N:0:GGCTAC Contig484986 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13230:70585_1:N:0:AGCTAC Contig312226 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1617:70865_1:N:0:GGCTAC Contig59760 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5202:71310_1:N:0:GGCTAC Contig171283 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16880:71719_1:N:0:GGCTAC Contig349686 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18087:71916_1:N:0:GGCTAC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4397:72324_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2836:74562_1:N:0:GGCTAC Contig37313 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3476:75311_1:N:0:GGCTAC Contig71265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8693:75718_1:N:0:AGCTAC Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9905:75855_1:N:0:GGCTAC Contig585302 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20055:78896_1:N:0:GGCTAC Contig612634 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11219:79021_1:N:0:GGCTAC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20427:79662_1:N:0:GGCTAC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1195:80017_1:N:0:GGCTAC Contig77186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20405:80336_1:N:0:GGCTAC Contig132152 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11107:81784_1:N:0:GGCTAC Contig571037 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6475:84486_1:N:0:GGCTAC Contig455576 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8944:84734_1:N:0:GGCTAC Contig566930 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20748:84613_1:N:0:AGCTAC Contig113189 9380 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16306:85042_1:N:0:GGCTAC Contig113375 1686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12938:86142_1:N:0:GGCTAC Contig9212 3156 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12634:86328_1:N:0:GGCTAC Contig523940 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2941:86915_1:N:0:GGCTAC Contig538223 407 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17273:88161_1:N:0:GGCTAC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17549:88950_1:N:0:AGCTAC Contig125278 3051 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17129:90177_1:N:0:GGCTAC Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3039:91331_1:N:0:AGCTAC Contig91898 1631 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2588:92638_1:N:0:GGCTAC Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2249:93105_1:N:0:GGCTAC Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19552:93423_1:N:0:GGCTAC Contig611301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9111:95061_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20143:95237_1:N:0:GGCTAC Contig346810 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20459:95449_1:N:0:GGCTAC Contig156709 1165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19426:95951_1:N:0:GGCTAC Contig393086 219 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15140:96109_1:N:0:GGCTAC Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10229:97195_1:N:0:AGCTAC Contig695752 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15024:97952_1:N:0:GGCTAC Contig215392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17146:100004_1:N:0:GGCTAC Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11540:3324_1:N:0:GGCTAC Contig205365 798 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17439:3503_1:N:0:GGCTAC Contig187358 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17088:3867_1:N:0:GGCTAC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5598:5101_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10985:5290_1:N:0:GGCTAC Contig328969 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8963:5984_1:N:0:GGCTAC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1320:6883_1:N:0:GGCTAC Contig144960 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8998:7899_1:N:0:GGCTAC Contig13162 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16613:9716_1:N:0:GGCTAC Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5219:9978_1:N:0:GGCTAC Contig67464 13173 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20992:10119_1:N:0:GGCTAC Contig496352 375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7122:12391_1:N:0:AGCTAC Contig529578 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17578:13111_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17370:13272_1:N:0:GGCTAC Contig370565 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18712:13812_1:N:0:GGCTAC Contig672122 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7616:14096_1:N:0:GGCTAC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17653:14019_1:Y:0:GGCTAC Contig686974 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10053:14777_1:N:0:GGCTAC Contig151085 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10391:15326_1:N:0:GGCTAC Contig220441 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10079:15603_1:N:0:GGCTAC Contig50451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8471:15903_1:N:0:GGCTAC Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18022:16688_1:N:0:GGCTAC Contig11067 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6590:19126_1:N:0:GGCTAC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18642:19531_1:N:0:GGCTAC Contig9115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5786:20115_1:N:0:GGCTAC Contig211686 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6982:21046_1:N:0:GGCTAC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8720:21163_1:N:0:AGCTAC Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3205:21271_1:N:0:GGCTAC Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7018:21338_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3393:21790_1:N:0:GGCTAC Contig325887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1791:22297_1:N:0:GGCTAC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10999:24686_1:N:0:GGCTAC Contig424300 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15750:24674_1:N:0:GGCTAC Contig3758 2745 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17879:25135_1:N:0:GGCTAC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7312:25428_1:N:0:AGCTAC Contig546574 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12749:25362_1:N:0:GGCTAC Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15560:25340_1:N:0:GGCTAC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13309:26191_1:N:0:GGCTAC Contig48907 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7324:26395_1:Y:0:GGCTAC Contig405581 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7614:26505_1:N:0:GGCTAC Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10167:29850_1:N:0:GGCTAC Contig123259 1531 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18014:31468_1:N:0:GGCTAC Contig43880 6706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2105:31647_1:N:0:GGCTAC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4335:32889_1:N:0:GGCTAC Contig48146 10268 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12726:33003_1:N:0:GGCTAC Contig131043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19512:33672_1:N:0:GGCTAC Contig108161 5759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13484:34472_1:N:0:GGCTAC Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2310:34978_1:Y:0:AGCTAC Contig215786 981 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6109:34967_1:N:0:GGCTAC Contig83611 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8491:35542_1:N:0:GGCTAC Contig162678 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18230:36939_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2799:39365_1:N:0:GGCTAC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7417:40269_1:N:0:GGCTAC Contig645560 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6859:41082_1:N:0:GGCTAC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17305:41560_1:N:0:GGCTAC Contig455594 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16312:41790_1:N:0:GGCTAC Contig525263 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19691:42642_1:N:0:GGCTAC Contig606727 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16937:43107_1:N:0:GGCTAC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8912:43796_1:N:0:GGCTAC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17137:44269_1:N:0:GGCTAC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9382:44734_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20445:44999_1:N:0:GGCTAC Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21052:45258_1:N:0:GGCTAC Contig26938 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19312:46017_1:N:0:GGCTAC Contig215392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17530:48387_1:N:0:GGCTAC Contig37938 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7745:48686_1:N:0:GGCTAC Contig258676 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8879:49078_1:N:0:GGCTAC Contig44935 2058 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1954:49616_1:N:0:GGCTAC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18528:50756_1:N:0:AGCTAC Contig506709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5710:51175_1:N:0:GGCTAC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1854:52240_1:N:0:GGCTAC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4971:52199_1:N:0:GGCTAC Contig166304 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6492:52023_1:N:0:AGCTAC Contig449421 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11104:54017_1:N:0:GGCTAC Contig426846 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14833:59200_1:N:0:GGCTAC Contig360647 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14859:59478_1:N:0:CGCTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6547:59662_1:N:0:GGCTAC Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14726:59553_1:N:0:GGCTAC Contig74333 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13667:60092_1:N:0:GGCTAC Contig501915 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3991:60457_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5465:62326_1:N:0:GGCTAC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8578:62567_1:N:0:GGCTAC Contig33716 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12579:62711_1:N:0:GGCTAC Contig24063 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3536:63223_1:N:0:GGCTAC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15989:63463_1:N:0:AGCTAC Contig61927 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12173:63611_1:N:0:GGCTAC Contig22621 6888 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13122:63893_1:N:0:GGCTAC Contig630382 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8609:64918_1:N:0:AGCTAC Contig164743 1154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2593:67710_1:N:0:GGCTAC Contig6657 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16497:68418_1:Y:0:GGCTAC Contig529785 169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17918:68769_1:Y:0:GGCTAC Contig127313 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4213:69335_1:N:0:GGCTAC Contig656558 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7500:69619_1:N:0:GGCTAC Contig212284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1757:71676_1:N:0:GGCTAC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11864:72610_1:Y:0:GGCTAC Contig161344 431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7457:73378_1:N:0:GGCTAC Contig177964 770 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14160:73265_1:N:0:GGCTAC Contig490770 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5850:74712_1:N:0:GGCTAC Contig369717 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19171:74711_1:N:0:GGCTAC Contig645560 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4603:75109_1:N:0:GGCTAC Contig286136 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3971:76853_1:N:0:GGCTAC Contig438688 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5396:77062_1:N:0:GGCTAC Contig174710 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3599:77741_1:N:0:GGCTAC Contig101658 9109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14634:77799_1:N:0:AGCTAC Contig647954 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9668:78066_1:N:0:GGCTAC Contig144517 874 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3190:78569_1:N:0:GGCTAC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3230:79948_1:N:0:GGCTAC Contig289013 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11042:79996_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3359:80641_1:N:0:GGCTAC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13933:80618_1:N:0:GGCTAC Contig114160 1042 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4928:81059_1:N:0:GGCTAC Contig678904 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20669:81101_1:N:0:GGCTAC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18271:82153_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16285:82585_1:N:0:GGCTAC Contig558312 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10340:83819_1:N:0:GGCTAC Contig645270 202 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1118:84566_1:Y:0:GGCTAC Contig56997 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15698:84666_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7591:85862_1:Y:0:GGCTAC Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4086:86361_1:N:0:GGCTAC Contig442105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12338:87134_1:N:0:GGCTAC Contig282466 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18179:87081_1:N:0:GGCTAC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16355:89079_1:Y:0:GGCTAC Contig234171 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15101:89277_1:N:0:GGCTAC Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15018:89298_1:N:0:GGCTAC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6148:91081_1:N:0:GGCTAC Contig271201 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13527:91220_1:N:0:GGCTAC Contig190401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12679:91398_1:N:0:GGCTAC Contig674066 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17084:91400_1:N:0:AGCTAC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16759:91778_1:N:0:GGCTAC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18413:92617_1:N:0:GGCTAC Contig314563 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6357:93819_1:N:0:GGCTAC Contig590763 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16762:94027_1:N:0:GGCTAC Contig170690 1020 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8055:94410_1:N:0:GGCTAC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1114:94877_1:N:0:NGCTAC Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15878:94972_1:Y:0:GGCTAC Contig145453 2320 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10518:95058_1:N:0:GGCTAC Contig469492 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13063:96927_1:N:0:GGCTAC Contig168498 593 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11159:97974_1:N:0:GGCTAC Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11534:97890_1:N:0:GGCTAC Contig448024 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10007:98104_1:N:0:GGCTAC Contig216707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7776:98398_1:N:0:GGCTAC Contig12186 347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11946:99877_1:N:0:GGCTAC Contig53330 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19380:100290_1:N:0:GGCTAC Contig157385 1106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18719:2515_1:N:0:GGCTAC Contig419427 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18524:3073_1:N:0:GGCTAC Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17835:4565_1:N:0:GGCTAC Contig298422 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18236:5067_1:N:0:GGCTAC Contig364325 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17040:6289_1:N:0:GGCTAC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17716:7538_1:N:0:GGCTAC Contig618614 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1445:8075_1:N:0:GGCTAC Contig148751 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16172:8463_1:N:0:GGCTAC Contig62704 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12577:8545_1:Y:0:GGCTAC Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10601:9377_1:N:0:GGCTAC Contig114989 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16227:9656_1:N:0:GGCTAC Contig477840 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8231:9837_1:N:0:GGCTAC Contig96628 1443 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18651:10909_1:N:0:AGCTAC Contig316168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19484:10780_1:N:0:GGCTAC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14371:11288_1:N:0:GGCTAC Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18132:11796_1:N:0:GGCTAC Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1717:12004_1:N:0:GGCTAC Contig187358 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10618:12737_1:N:0:GGCTAC Contig201334 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5924:13221_1:N:0:GGCTAC Contig71648 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8248:13028_1:N:0:GGCTAC Contig657013 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19388:13615_1:N:0:GGCTAC Contig94812 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2688:13851_1:N:0:GGCTAC Contig385276 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2474:15588_1:N:0:GGCTAC Contig598681 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11402:16646_1:Y:0:GGCTAC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16192:16694_1:N:0:GGCTAC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19552:16757_1:N:0:GGCTAC Contig52644 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7099:17653_1:N:0:GGCTAC Contig3611 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3321:17814_1:N:0:AGCTAC Contig464396 4661 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3543:17764_1:N:0:GGCTAC Contig52115 2644 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15639:17895_1:N:0:GGCTAC Contig18716 78248 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7007:18310_1:N:0:GGCTAC Contig13730 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16829:19081_1:N:0:GGCTAC Contig540583 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9740:20742_1:N:0:GGCTAC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9085:20801_1:Y:0:GGCTAC Contig538735 162 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18430:21044_1:N:0:GGCTAC Contig175398 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20117:22188_1:N:0:TGCTAC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12688:23633_1:N:0:GGCTAC Contig474092 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9619:25217_1:N:0:GGCTAC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12168:26119_1:N:0:GGCTAC Contig306337 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5866:26444_1:N:0:GGCTAC Contig665373 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16020:27065_1:N:0:GGCTAC Contig126695 3026 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8648:28076_1:N:0:GGCTAC Contig53128 14628 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 681568 (68.16%) aligned 0 times 113924 (11.39%) aligned exactly 1 time 204508 (20.45%) aligned >1 times 31.84% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 629367 (62.94%) aligned 0 times 123904 (12.39%) aligned exactly 1 time 246729 (24.67%) aligned >1 times 37.06% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 629688 (62.97%) aligned 0 times 122635 (12.26%) aligned exactly 1 time 247677 (24.77%) aligned >1 times 37.03% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 682278 (68.23%) aligned 0 times 113653 (11.37%) aligned exactly 1 time 204069 (20.41%) aligned >1 times 31.77% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_11_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_11_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 304722 Mapping efficiency: 30.5% Final Cytosine Methylation Report ================================= Total number of C's analysed: 1943271 Total methylated C's in CpG context: 346776 Total methylated C's in CHG context: 8887 Total methylated C's in CHH context: 91070 Total methylated C's in Unknown context: 73 Total unmethylated C's in CpG context: 55685 Total unmethylated C's in CHG context: 389558 Total unmethylated C's in CHH context: 1051295 Total unmethylated C's in Unknown context: 366 C methylated in CpG context: 86.2% C methylated in CHG context: 2.2% C methylated in CHH context: 8.0% C methylated in Unknown context (CN or CHN): 16.6% Bismark completed in 0d 3h 32m 21s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_12_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_12_s456_trimmed.fq.gz to zr1394_12_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_12_s456_trimmed.fq.gz to zr1394_12_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_12_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_12_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_12_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_12_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1130:2172_1:N:0:CTTGTA 4 * 0 0 * * 0 0 TTTTTTGGTTGGATGTAATAGATTATGATTG BFB/FF//FF////7/>> Writing bisulfite mapping results to zr1394_12_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_12_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19894:2316_1:N:0:CTTGTA Contig174714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18885:2531_1:Y:0:CTTGTA Contig309740 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8003:2961_1:N:0:CTTGTA Contig32976 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13790:2989_1:N:0:CTTTTA Contig648930 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3515:3328_1:N:0:CTTGTA Contig240419 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2105:3914_1:N:0:CTTGTA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14044:4845_1:N:0:CTTGTA Contig140835 1267 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10752:5040_1:N:0:CTTGTA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17058:5640_1:Y:0:CTTTTA Contig140866 1241 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9009:6532_1:N:0:CTTGTA Contig403687 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2602:7662_1:N:0:CTTGTA Contig501603 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17713:7521_1:N:0:CTTGTA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1321:7910_1:N:0:CTTGTA Contig638593 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14048:9229_1:N:0:CTTGTA Contig585564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1756:10210_1:N:0:CTTGTA Contig255093 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13363:10456_1:N:0:CTTGTA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15636:10920_1:N:0:CTTGTA Contig8057 8187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3370:11148_1:N:0:CTTGTA Contig406108 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5008:11325_1:N:0:CTTGTA Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8025:13510_1:N:0:CTTGTA Contig668575 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11814:14495_1:N:0:CTTGTA Contig69965 4741 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15515:15056_1:N:0:CTTGTA Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15296:16640_1:N:0:CTTGTA Contig29514 5391 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17099:16525_1:N:0:CTTGTA Contig647199 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4904:17891_1:N:0:CTTGTA Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15008:17956_1:N:0:CTTGTA Contig67071 5928 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4774:18022_1:N:0:CTTGTA Contig660197 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15941:18098_1:N:0:CTTGTA Contig542660 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10410:18480_1:N:0:CTTGTA Contig352230 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5071:19051_1:N:0:CTTGTA Contig66125 9277 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17834:20467_1:N:0:CTTGTA Contig368522 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20620:20618_1:N:0:CTTGTA Contig135245 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10863:21668_1:N:0:CTTGTA Contig165158 1106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21286:23550_1:N:0:CTTGTA Contig466367 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21037:25674_1:N:0:CTTGTA Contig585393 430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9716:25806_1:N:0:CTTGTA Contig66484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16540:25815_1:N:0:CTTGTA Contig622011 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7239:27397_1:N:0:CTTGTA Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16061:27552_1:N:0:CTTGTA Contig79291 1945 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20905:28236_1:N:0:CTTGTA Contig416683 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9038:28857_1:N:0:CTTGTA Contig3510 6634 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13463:29134_1:N:0:TTTGTA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8995:29268_1:N:0:CTTGTA Contig471935 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11000:30781_1:N:0:CTTGTA Contig397385 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14138:30880_1:Y:0:CTTGTA Contig480629 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17066:30935_1:N:0:CTTGTA Contig40240 1815 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15361:31451_1:N:0:CTTGTA Contig579818 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18632:31353_1:N:0:CTTGTA Contig79166 2911 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4979:32011_1:N:0:CTTGTA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1351:34962_1:N:0:CTTGTA Contig440652 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16477:35590_1:N:0:CTTGTA Contig385355 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20313:35903_1:N:0:CTTGTA Contig233955 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5947:36820_1:N:0:CTTGTA Contig13994 528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7546:38162_1:N:0:CTTGTA Contig358871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4373:38447_1:N:0:CTTGTA Contig419979 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9346:38699_1:N:0:CTTGTA Contig476846 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10156:38898_1:N:0:CTTGTA Contig118420 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11512:39957_1:N:0:CTTGTA Contig403687 241 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2316:40129_1:N:0:CTTGTA Contig598097 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16224:40446_1:N:0:CTTGTA Contig673502 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21056:41055_1:N:0:CTTGTA Contig77590 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20595:41355_1:N:0:CTTGTA Contig662194 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9843:42851_1:N:0:CTTGTA Contig534390 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1629:45200_1:Y:0:CTTGTA Contig189000 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7836:46781_1:N:0:CTTGTA Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16313:47416_1:N:0:CTTGTA Contig297179 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12476:47823_1:Y:0:CTTGTA Contig615097 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10519:48347_1:N:0:CTTGTA Contig487437 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8196:48516_1:N:0:CTTGTA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7775:50010_1:Y:0:CTTGTA Contig73118 3145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14251:50460_1:N:0:CTTGTA Contig8057 8187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12370:50759_1:N:0:CTTGTA Contig445420 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3597:53002_1:N:0:CTTGTA Contig450203 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6514:53017_1:N:0:CTTGTA Contig536788 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9095:53043_1:N:0:CTTGTA Contig564182 119 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10046:56678_1:N:0:CTTGTA Contig498260 1019 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9145:57077_1:N:0:CTTGTA Contig8057 8187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11729:57332_1:N:0:CTTGTA Contig581536 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13884:57760_1:N:0:CTTGTA Contig24949 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11551:58490_1:N:0:CTTGTA Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18920:58571_1:Y:0:CTTGTA Contig133326 1998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14295:59576_1:N:0:CTTGTA Contig192988 1669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20703:60400_1:N:0:CTTGTA Contig73114 9287 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13491:60516_1:N:0:CTTGTA Contig76123 2723 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15130:61704_1:N:0:CTTGTA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13464:62127_1:N:0:CTTGTA Contig211823 4753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13598:62378_1:N:0:CTTGTA Contig176296 1066 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16428:62685_1:N:0:CTTGTA Contig474818 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19685:64066_1:N:0:CTTGTA Contig248177 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3205:64978_1:N:0:CTTGTA Contig429218 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15881:64837_1:N:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11875:65363_1:N:0:CTTGTA Contig213739 1425 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19109:66375_1:N:0:CTTGTA Contig673642 187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6838:66537_1:N:0:CTTGTA Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17952:66670_1:N:0:CTTGTA Contig180820 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2856:67396_1:N:0:CTTGTA Contig664808 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16895:70082_1:N:0:CTTGTA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20083:70897_1:N:0:CTTGTA Contig272235 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20623:72129_1:N:0:CTTGTA Contig296481 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6070:73200_1:N:0:CTTGTA Contig53767 3497 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12380:73383_1:N:0:CTTGTA Contig618226 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18570:74806_1:N:0:CTTGTA Contig494437 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6932:77189_1:N:0:CTTGTA Contig106215 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1838:77466_1:N:0:CTTGTA Contig90933 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5470:79010_1:N:0:CTTGTA Contig314528 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13755:79105_1:Y:0:CTTGTA Contig142624 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10218:79600_1:N:0:CTTGTA Contig125396 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8892:80664_1:N:0:CTTGTA Contig248331 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15974:80692_1:N:0:CTTGTA Contig527169 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1803:81086_1:N:0:CTTGTA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4782:81867_1:N:0:CGTGTA Contig273760 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8114:82882_1:N:0:CTTGTA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1625:83952_1:N:0:CTTGTA Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7530:83814_1:N:0:CTTGTA Contig562000 549 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9905:83832_1:N:0:CTTGTA Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14729:84765_1:N:0:CTTGTA Contig419979 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19037:88067_1:N:0:CTTGTA Contig347662 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4994:89011_1:N:0:CTTGTA Contig562041 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17111:89009_1:N:0:CTTGTA Contig347876 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8068:90446_1:Y:0:CTTGTA Contig189495 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11499:90378_1:Y:0:CTTGTA Contig84407 10362 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10908:90724_1:N:0:CTTGTA Contig192988 1666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8593:90804_1:N:0:CTTGTA Contig320635 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19334:91421_1:N:0:CTTGTA Contig195226 422 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4007:92274_1:N:0:CTTGTA Contig128149 1465 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7540:92674_1:N:0:CTTGTA Contig54452 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1409:93385_1:N:0:CTTGTA Contig273760 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11922:93392_1:N:0:CTTGTA Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7524:93648_1:N:0:CTTGTA Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7394:93970_1:N:0:CTTGTA Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1767:95086_1:N:0:CTTGTA Contig515495 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2304:95154_1:N:0:CTTGTA Contig16728 3541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3758:95407_1:Y:0:CTTGTT Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4355:96575_1:N:0:CTTGTA Contig81425 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12631:97044_1:N:0:CTTGTA Contig437004 1076 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3211:97702_1:N:0:CTTGTA Contig333205 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3983:97534_1:N:0:CTTGTA Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11697:98497_1:Y:0:CTTGTA Contig573992 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12083:98596_1:N:0:CTTGTA Contig487350 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7722:99236_1:N:0:CTTGTA Contig234397 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17172:99237_1:N:0:CTTGAA Contig30655 1640 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8895:100010_1:N:0:CTTGTA Contig494837 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12401:3095_1:N:0:CTTGTA Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15569:3237_1:N:0:CTTGTA Contig598386 595 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7904:3487_1:N:0:CTTGTA Contig421493 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2068:5284_1:Y:0:CTTGTA Contig562765 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10722:6861_1:N:0:CTTGTA Contig150701 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13583:8810_1:N:0:CTTGTA Contig72676 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8796:9063_1:N:0:TTTGTA Contig31473 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14492:10136_1:N:0:CTTGTA Contig50415 19090 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6827:10657_1:N:0:CTTGTA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14966:11338_1:N:0:CTTGTA Contig33162 30897 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18802:11367_1:N:0:CTTGTA Contig46948 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14050:12502_1:N:0:CTTGTA Contig539956 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18220:12737_1:N:0:CTTGTA Contig86685 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2724:13571_1:N:0:CTTGTA Contig600466 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3093:13752_1:N:0:CTTGTA Contig8392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8209:14800_1:N:0:CTTGTA Contig294721 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20040:14762_1:N:0:CTTGTA Contig447977 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5031:15307_1:N:0:CTTGTA Contig454143 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15392:15799_1:N:0:CTTGTA Contig409896 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11518:16744_1:N:0:CTTGTA Contig306533 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20177:16840_1:N:0:CTTGTA Contig448024 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9412:17065_1:N:0:CTTGTA Contig3510 6634 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16263:17689_1:N:0:CTTGTA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17066:17932_1:N:0:CTTGTA Contig296281 186 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10286:20165_1:N:0:CTTGTA Contig314765 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10944:20351_1:N:0:CTTGTA Contig511006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21113:22324_1:N:0:CTTGTA Contig46387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2811:22830_1:N:0:CTTGTA Contig269558 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5428:23203_1:N:0:CTTGTA Contig160906 726 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5290:25409_1:N:0:CTTGTA Contig551859 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8822:25832_1:N:0:CTTGTA Contig406236 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17446:26066_1:N:0:CTTGTA Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2203:28024_1:N:0:CTTGTA Contig138394 1206 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15430:28989_1:N:0:CTTGTA Contig88030 2169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2504:29040_1:N:0:CTTGTA Contig58829 4269 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15778:29118_1:Y:0:CTTGTA Contig52056 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15271:31192_1:N:0:CTTGTA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9851:32114_1:N:0:CTTGTA Contig284284 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4046:32493_1:N:0:CTTGTA Contig613233 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8649:32476_1:N:0:CTTGTA Contig105734 8077 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11884:32475_1:N:0:CTTGTA Contig46471 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5234:34918_1:N:0:CTTGTA Contig203707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7776:35607_1:N:0:CTTGTA Contig221491 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21237:36626_1:N:0:CTTGTA Contig674066 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14106:39768_1:N:0:CTTGTA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2273:42121_1:N:0:CTTGTA Contig91220 7580 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13348:42057_1:N:0:CTTGTA Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1356:42410_1:N:0:CTTGTA Contig523940 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6630:42489_1:N:0:CTTGTA Contig155975 2598 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13409:42270_1:N:0:CTTGTA Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18004:42383_1:N:0:CTTGTA Contig674752 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4564:42638_1:N:0:CTTGTA Contig158089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5490:43539_1:N:0:CTTGTA Contig159318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19849:44138_1:N:0:TTTGTA Contig122688 736 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5680:44504_1:N:0:CTTGTA Contig7715 7903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10411:44790_1:N:0:CTTGTA Contig513214 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6411:45089_1:N:0:CTTGTA Contig45483 25334 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17556:45645_1:N:0:CTTGTA Contig562041 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5915:47490_1:N:0:CTTGTA Contig426079 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12523:47362_1:N:0:CTTGTA Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11176:47936_1:N:0:CTTGTA Contig465244 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10780:48494_1:N:0:CTTGTA Contig521356 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20914:49283_1:N:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4189:50347_1:Y:0:CTTGTA Contig581536 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19668:50371_1:N:0:CTTGTA Contig282958 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6911:51988_1:N:0:CTTGTA Contig505908 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9447:51902_1:Y:0:CTTGTA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20381:51771_1:N:0:CTTGTA Contig239075 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1323:53003_1:N:0:CTTGTA Contig559806 259 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12314:53879_1:N:0:CTTGTA Contig37313 158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9469:54552_1:Y:0:CTTGTA Contig397915 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16641:55053_1:N:0:CTTGTA Contig601336 252 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17153:55073_1:N:0:CTTGTA Contig390002 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18696:55322_1:Y:0:CTTGTA Contig19409 7646 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12498:55810_1:N:0:CTTGTA Contig35786 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11855:56769_1:N:0:CTTGTA Contig461699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5970:57361_1:N:0:CTTGTA Contig156879 506 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16580:57785_1:N:0:CTTGTA Contig427170 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2168:59249_1:N:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17204:60974_1:Y:0:CTTGTA Contig200657 840 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13364:61822_1:N:0:CTTGTA Contig673283 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5389:62889_1:N:0:CTTGTA Contig557727 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18968:63451_1:N:0:CTTGTA Contig245061 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13776:63933_1:N:0:CTTGTA Contig91774 2259 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6338:64129_1:N:0:CTTGTA Contig96738 1298 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12954:64399_1:N:0:CTTGTA Contig43736 3408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14984:66261_1:N:0:CTTGTA Contig449234 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17814:66673_1:N:0:CTTGTA Contig39170 9123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15634:67502_1:N:0:CTTGTA Contig119718 870 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11106:68270_1:N:0:CTTGTA Contig427080 1115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8470:69075_1:N:0:CTTGAA Contig608747 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7383:69434_1:N:0:CTTGTA Contig476982 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18708:69865_1:N:0:CTTGTA Contig537336 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6648:70130_1:N:0:CTTGTA Contig588443 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12742:70031_1:N:0:CTTGTA Contig257409 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12012:71262_1:N:0:CTTGTA Contig667476 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19219:71450_1:N:0:CTTGTA Contig338403 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5212:71619_1:N:0:CTTGTA Contig212563 446 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17248:71958_1:N:0:CTTGTA Contig675564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13960:73254_1:N:0:CTTGTA Contig363124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11168:74355_1:N:0:CTTGTA Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15865:75643_1:N:0:CTTGTA Contig15808 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13728:75829_1:N:0:CTTGTA Contig334719 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17097:76033_1:N:0:CTTGTA Contig393896 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10913:76760_1:N:0:CTTGTA Contig595751 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4767:77031_1:N:0:CTTGTA Contig552723 2759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3396:77846_1:N:0:CTTGTA Contig233090 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2424:78852_1:N:0:CTTGTT Contig74242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15845:79382_1:N:0:TTTGTA Contig43566 10024 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15953:79469_1:N:0:CTTGTA Contig131040 14111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11853:79599_1:N:0:CTTGTA Contig474704 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9136:79819_1:N:0:CTTGTA Contig119417 2922 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14495:80492_1:N:0:CTTGTA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16187:81512_1:N:0:CTTGTA Contig75271 2595 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20630:82104_1:N:0:CTTGTT Contig275562 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19450:82341_1:N:0:CTTGTA Contig324165 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2006:83182_1:N:0:CTTGTA Contig76988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17607:83160_1:N:0:CTTGTA Contig31504 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17841:83184_1:N:0:CTTGTA Contig64902 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17904:83872_1:N:0:CTTGTA Contig614733 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2682:84008_1:Y:0:CTTGTA Contig74987 24265 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3947:84128_1:N:0:CTTGTA Contig4882 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7858:84018_1:Y:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16196:84279_1:N:0:CTTGTA Contig125243 1014 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18174:87496_1:N:0:CTTGTA Contig183189 607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13158:90812_1:N:0:CTTGTA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13797:92910_1:N:0:CTTGTA Contig113390 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15411:93078_1:N:0:CTTGTA Contig63056 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6766:93597_1:N:0:CTTGTA Contig139112 1052 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2100:94364_1:N:0:CTTGTA Contig167526 950 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18127:94512_1:N:0:CTTGTA Contig197727 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20829:94795_1:N:0:CTTGTA Contig171283 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2512:95464_1:N:0:CTTGTA Contig84561 1596 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14486:95787_1:N:0:CTTGTA Contig119919 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19880:97880_1:N:0:CTTGTA Contig657114 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17190:98801_1:N:0:CTTGTA Contig455848 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17599:99019_1:N:0:CTTGTA Contig239672 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15169:2769_1:N:0:CTTGTA Contig146075 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11187:3080_1:N:0:CTTGTA Contig90154 3079 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4106:3345_1:N:0:CTTGTA Contig277899 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17841:3704_1:N:0:CTTGTA Contig85991 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1393:4396_1:N:0:CTTGTA Contig465068 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18755:5238_1:Y:0:CTTGTT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12539:5459_1:N:0:CTTGTA Contig516796 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8729:6164_1:N:0:CTTGTA Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20328:6653_1:N:0:CTTGTA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20234:9194_1:N:0:CTTGTA Contig191262 601 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20124:13057_1:N:0:CTTGTA Contig531609 177 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14246:16086_1:N:0:CTTGTA Contig435902 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4418:16370_1:N:0:CTTGTA Contig124712 1465 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1909:17779_1:N:0:CTTGTA Contig166192 3451 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9977:17826_1:N:0:CTTGTA Contig496969 176 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15074:18179_1:N:0:CTTGTA Contig636133 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13128:18623_1:N:0:CTTGTA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13001:19632_1:N:0:CTTGTA Contig684041 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9948:20262_1:N:0:CTTGTA Contig94546 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8556:20661_1:N:0:CTTGTA Contig628880 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15380:20783_1:N:0:CTTGTA Contig228471 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2946:22178_1:N:0:CTTGTA Contig497 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10760:23404_1:N:0:CTTGTA Contig26601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20880:23636_1:N:0:CTTGTA Contig560405 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17221:24043_1:N:0:CTTGTA Contig562765 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1187:24412_1:N:0:CTTGTA Contig380031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9147:25446_1:N:0:CTTGTA Contig419860 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10531:25554_1:N:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12990:27756_1:N:0:CTTGTA Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3972:28661_1:N:0:CTTGTA Contig16424 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3060:29998_1:N:0:CTTGTA Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13605:29837_1:N:0:CTTGTA Contig573280 586 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5489:30491_1:N:0:CTTGTA Contig180749 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17361:31838_1:N:0:CTTGTA Contig50717 12159 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15165:32088_1:N:0:CTTGTA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6982:32373_1:N:0:CTTGTA Contig370728 1239 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15083:33253_1:N:0:CTTGTA Contig1819 20013 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10221:33785_1:N:0:CTTGTA Contig494837 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18361:33973_1:N:0:CTTGTA Contig580246 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1936:34721_1:N:0:CTTGTA Contig66836 3530 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5198:34981_1:N:0:CTTGTA Contig198682 452 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21192:35031_1:N:0:CTTGTA Contig500898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11997:36513_1:N:0:CTTGTA Contig405429 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6430:37208_1:N:0:CTTGTA Contig173949 238 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13850:37921_1:N:0:CTTGTA Contig440547 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19587:38098_1:N:0:CTTGTA Contig626987 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1587:39162_1:N:0:CTTGTA Contig322883 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10167:40573_1:N:0:CTTGTA Contig260781 233 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4137:42390_1:N:0:CTTGTA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12560:43013_1:N:0:CTTGTA Contig520867 150 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13851:43240_1:N:0:CTTGTA Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18800:43147_1:N:0:CTTGTA Contig428474 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7892:43933_1:N:0:CTTGTA Contig301152 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7851:45106_1:N:0:CTTGTA Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14034:45250_1:N:0:CTTGTA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8147:45668_1:N:0:CTTGTA Contig74919 3534 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9538:45826_1:N:0:CTTGTA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11835:47162_1:N:0:CTTGTA Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4449:47383_1:N:0:CTTGTA Contig17899 34297 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20804:49126_1:Y:0:CTTGTA Contig98325 1133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6938:49535_1:N:0:CTTGTA Contig175582 2116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14394:49562_1:N:0:CTTGTA Contig98325 1134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12240:52352_1:Y:0:CTTGTA Contig523940 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5813:53081_1:N:0:CTTGTA Contig36186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6275:54218_1:N:0:CTTGTA Contig17884 43091 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5307:54437_1:N:0:CTTGTA Contig8057 8188 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3438:54948_1:N:0:CTTGTA Contig137863 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6897:55106_1:N:0:CTTGTA Contig37313 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14402:55151_1:N:0:CTTGTA Contig391011 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7319:56093_1:N:0:CTTGTA Contig443469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19265:56681_1:N:0:CTTGTA Contig315612 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6177:56881_1:N:0:CTTGTA Contig34509 27912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20312:57234_1:Y:0:CTTGTA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7615:58020_1:N:0:CTTGTA Contig150175 3324 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3123:58790_1:N:0:CTTGTA Contig220832 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13194:59338_1:N:0:CTTGTA Contig360958 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5078:60025_1:N:0:CTTGTA Contig223843 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8704:60456_1:N:0:CTTGTA Contig59946 3761 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9094:60738_1:N:0:CTTGTA Contig586614 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18441:62412_1:N:0:CTTGTA Contig6830 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13432:62671_1:N:0:CTTGTA Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20071:62987_1:Y:0:CTTGTA Contig676640 300 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14529:63059_1:N:0:CTTGTA Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9309:63531_1:N:0:CTTGTA Contig627516 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17936:63926_1:N:0:CTTGTA Contig353317 186 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20539:63988_1:N:0:CTTGTA Contig200416 370 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7732:64376_1:N:0:CTTGTA Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15470:64316_1:N:0:CTTGTA Contig117725 1221 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1612:64750_1:N:0:CTTGTA Contig77885 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4769:64740_1:N:0:CTTGTA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11529:65830_1:N:0:CTTGTA Contig196883 604 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7816:66590_1:N:0:CTTGTA Contig669994 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15945:67284_1:N:0:GTTGTA Contig33174 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4832:67870_1:N:0:CTTGTA Contig604884 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14110:68121_1:N:0:CTTGTA Contig147966 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14762:68944_1:N:0:CTTGTA Contig595851 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8602:69300_1:N:0:CTTGTA Contig593455 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7480:70280_1:N:0:CTTGTA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20644:71020_1:N:0:CTTATA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21050:73343_1:N:0:CTTGTA Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1861:74509_1:N:0:CTTGTA Contig131139 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1911:76145_1:N:0:CTTGTA Contig500347 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9266:77456_1:N:0:CTTGTA Contig38995 22775 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10468:77828_1:N:0:CTTGTA Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12165:78010_1:N:0:CTTGTA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6655:78618_1:N:0:CTTGTA Contig484218 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9376:79985_1:N:0:CTTGTA Contig197316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5914:80955_1:N:0:CTTGTA Contig50535 12698 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7855:80815_1:N:0:CTTGTA Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11234:81376_1:N:0:CTTGTA Contig93379 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14617:82660_1:N:0:CTTGTA Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1862:83666_1:N:0:CTTGTA Contig196864 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6782:83848_1:N:0:CTTGTA Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6663:84957_1:N:0:CTTGTA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15450:86071_1:N:0:CTTGTA Contig90816 35835 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3124:87533_1:N:0:CTTGTA Contig526349 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2036:88326_1:Y:0:CTTGTA Contig127898 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8389:90306_1:N:0:CTTGTA Contig660154 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8333:91162_1:N:0:CTTGTA Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18801:91177_1:N:0:CTTGTA Contig98527 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21044:91886_1:N:0:CTTGTA Contig639394 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12425:92688_1:N:0:CTTGTA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7489:92926_1:N:0:CTTGTA Contig77698 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2010:93508_1:N:0:CTTGTA Contig679343 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20355:94925_1:N:0:CTTGTA Contig620947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3091:95857_1:N:0:CTTGTA Contig317103 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15560:96289_1:N:0:CTTGTA Contig288982 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16732:96950_1:N:0:CTTGTA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17801:96765_1:N:0:CTTGTA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7194:97204_1:N:0:CTTGTA Contig25964 8820 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11507:97768_1:Y:0:CTTGTA Contig459030 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20706:98608_1:N:0:CTTGTA Contig573773 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13440:3515_1:Y:0:CTTGTA Contig50279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16216:3920_1:N:0:CTTGTA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7942:4485_1:N:0:CTTGTA Contig19269 9129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12255:5743_1:N:0:CTTGTA Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15188:5515_1:N:0:CTCGTA Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4982:7721_1:N:0:CTTGTA Contig214378 960 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12096:8271_1:N:0:CTTGTA Contig114511 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10586:9120_1:N:0:CTTGTA Contig367837 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1770:9294_1:N:0:CTTGTA Contig271201 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3591:9318_1:N:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11096:9654_1:N:0:CTTGTA Contig442016 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8590:10154_1:N:0:CTTGTA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2451:10805_1:N:0:CTTGTA Contig451267 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10727:10968_1:N:0:CTTGTA Contig385355 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17866:12286_1:N:0:CTTGTA Contig37313 158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10468:12692_1:N:0:CTTGTA Contig500347 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9322:12803_1:N:0:CTTGTA Contig636666 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6135:13626_1:N:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1681:14392_1:Y:0:CTTGTA Contig398217 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7745:16129_1:N:0:CTTGTA Contig637676 526 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11266:16499_1:N:0:CTTGTA Contig237040 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8849:16795_1:N:0:CTTGTA Contig357783 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18214:17015_1:N:0:CTTGTA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12390:18487_1:N:0:CTTGTA Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14122:18670_1:N:0:CTTGTA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11967:18823_1:N:0:CTTGTA Contig7153 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19017:18849_1:N:0:CTTGTA Contig176624 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14641:20865_1:N:0:CTTGTA Contig324194 234 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11327:21678_1:Y:0:CTTGTA Contig2691 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20858:22140_1:N:0:CTTGTA Contig267237 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19848:22802_1:Y:0:CTTATA Contig351483 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9549:24239_1:N:0:CTTGTA Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5133:24503_1:N:0:CTTGTA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4900:25270_1:Y:0:CTTGTA Contig672031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12337:25930_1:N:0:CTTGTA Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20157:26242_1:N:0:CTTGTA Contig351483 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14207:27834_1:N:0:CTTGTA Contig48248 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1718:29842_1:Y:0:CTTGTA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2183:29952_1:N:0:CTTGTA Contig665373 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12432:29881_1:N:0:CTTGTA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12611:30092_1:N:0:CTTGTA Contig121233 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14404:30171_1:N:0:CTTGTA Contig502395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9972:34694_1:N:0:CTTGTA Contig660154 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18671:38029_1:N:0:CTTGTA Contig502333 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9974:39297_1:N:0:CTTGTA Contig163591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20828:39745_1:N:0:CTTGTA Contig189370 709 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16159:39932_1:N:0:CTTGTA Contig81887 7704 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17113:40919_1:N:0:CTTGTA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4220:43939_1:N:0:CTTGTA Contig637386 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18320:44220_1:N:0:CTTGTA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5388:44608_1:N:0:CTTGTA Contig202903 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4311:45595_1:N:0:CTTGTA Contig334719 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3043:47358_1:N:0:CTTGTA Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6217:49143_1:N:0:CTTGTA Contig335228 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20052:51647_1:N:0:CTTGTA Contig601866 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6414:51979_1:N:0:CTTGTA Contig55734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9981:51830_1:N:0:CTTGTA Contig361859 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4414:52011_1:N:0:CTTGTA Contig590823 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16742:52132_1:N:0:CTTGTA Contig124852 4291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10433:52851_1:Y:0:CTTGTA Contig537818 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16799:53581_1:N:0:CTTGTA Contig272721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8439:55113_1:N:0:CTTGTA Contig17801 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17515:55403_1:N:0:CTTGTA Contig37857 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18189:56662_1:N:0:CTTGTA Contig409344 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3428:56897_1:Y:0:CTTGTA Contig122685 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9710:59769_1:N:0:CTTGTA Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7516:60024_1:N:0:CTTGTA Contig525149 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6270:60533_1:N:0:CTTGTA Contig536082 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6427:61046_1:Y:0:CTTGTA Contig13117 485 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9452:63430_1:N:0:CTTGTA Contig640172 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2734:67741_1:N:0:CTTGTA Contig26622 36266 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16026:68235_1:N:0:CTTGTA Contig536068 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9301:68706_1:Y:0:CTTGTA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16085:70417_1:Y:0:CTTGTA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6384:70629_1:N:0:CTTGTA Contig450953 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15035:71041_1:N:0:CTTGTA Contig347395 176 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21339:71075_1:Y:0:CTTGTA Contig646577 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7769:71371_1:N:0:CTTGTA Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4760:72302_1:N:0:CTTGTA Contig101233 3954 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9426:72674_1:N:0:CTTGTA Contig101255 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10444:73887_1:N:0:CTTGTA Contig57944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10958:74440_1:N:0:CTTGTA Contig211623 5545 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4922:74549_1:N:0:CTTGTA Contig615866 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19564:74817_1:N:0:CTTGTA Contig142 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11792:75453_1:N:0:CTTGTA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7541:75736_1:N:0:CTTGTA Contig184943 555 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16458:75653_1:N:0:CTTGTG Contig91405 855 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2777:75829_1:Y:0:CTTGTA Contig685887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3462:76283_1:N:0:CTTGTA Contig424941 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14533:77535_1:N:0:CTTGTA Contig530927 375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8546:78957_1:Y:0:CTTGTA Contig141460 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7092:80058_1:N:0:CTTGTA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10571:80398_1:N:0:CTTGTA Contig8057 8187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5337:80827_1:N:0:CTTGTA Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10049:80936_1:N:0:CTTGTA Contig58165 2667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18398:86552_1:N:0:CTTGTA Contig323312 211 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16209:88248_1:N:0:CTTGTA Contig356550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13822:88524_1:N:0:CTTGTA Contig523701 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5569:89758_1:N:0:CTTGTA Contig133326 1997 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19289:90061_1:N:0:CTTGTA Contig674052 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12279:91511_1:N:0:CTTGTA Contig524673 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14277:92879_1:N:0:CTTGTA Contig198262 2572 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13616:93597_1:N:0:CTTGTA Contig612767 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10201:93929_1:N:0:CTTGTA Contig228445 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13820:94176_1:N:0:CTTGTA Contig160906 726 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15553:95491_1:N:0:CTTGTA Contig282466 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11069:97889_1:N:0:CTTGTA Contig278367 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7596:98316_1:N:0:CTTGTA Contig334833 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5960:98903_1:N:0:CTTGTA Contig452291 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20529:100042_1:N:0:CTTGTA Contig206165 836 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16642:2205_1:N:0:CTTGTA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13606:2800_1:N:0:CTTGTA Contig15316 1612 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20037:4522_1:N:0:CTTGTA Contig368592 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2855:6090_1:N:0:CTTGTA Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6275:7830_1:N:0:CTTGTA Contig230354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7033:8985_1:N:0:CTTGTA Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2935:12358_1:N:0:CTTGTA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15992:13097_1:N:0:CTTGTA Contig361754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19149:13176_1:N:0:CTTGTA Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14152:13468_1:N:0:CTTGTA Contig906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19673:13769_1:N:0:CTTGTA Contig670361 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18030:14523_1:Y:0:CTTGTA Contig3531 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15180:16649_1:Y:0:CTTGTA Contig517732 329 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19424:16708_1:N:0:CTTGTA Contig365075 133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13474:20050_1:N:0:CTTGTA Contig674724 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15533:20636_1:N:0:CTTGTA Contig455324 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15088:21202_1:N:0:CTTGTA Contig524000 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14465:21501_1:N:0:CTTGTA Contig372875 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11731:21770_1:N:0:CTTGTA Contig5656 3250 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8808:22144_1:N:0:CTTGTA Contig277695 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5723:22317_1:N:0:CTTGTA Contig6297 8561 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4827:25972_1:N:0:CTTGTA Contig167186 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17533:25780_1:N:0:CTTGTA Contig405429 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11215:26321_1:Y:0:CTTGTA Contig68542 9267 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19369:26281_1:N:0:CTTGTA Contig618395 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9095:26674_1:N:0:CTTGTA Contig30332 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12134:26775_1:N:0:CTTGTA Contig590598 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14389:27061_1:N:0:CTTGTA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5986:27877_1:N:0:CTTGTA Contig243367 151 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19695:27762_1:N:0:CTTGTA Contig410466 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15735:30259_1:N:0:CTTGTA Contig85192 5023 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13222:30584_1:N:0:CTTGTA Contig618226 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4710:31323_1:N:0:CTTGTA Contig654843 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14144:31978_1:N:0:CTTGTA Contig247351 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6339:32220_1:N:0:CTTGTA Contig103678 2398 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13538:32000_1:N:0:CTTGTA Contig96316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5059:32320_1:N:0:CTTGTA Contig299360 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2969:33214_1:N:0:CTTGTA Contig188781 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16070:33485_1:N:0:CTTGTA Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16930:33585_1:N:0:CTTGTA Contig18275 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14762:35315_1:N:0:CTTGTA Contig236421 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8297:35567_1:N:0:CTTGTA Contig373633 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2772:35801_1:N:0:CTTGTA Contig10508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4995:36063_1:N:0:CTTGTA Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12691:36110_1:N:0:CTTGTA Contig572941 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7663:36660_1:N:0:CTTGTA Contig335108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15614:36866_1:N:0:CTTGTA Contig131341 8494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19898:36948_1:N:0:CTTGTA Contig650811 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3857:38356_1:N:0:CTTGTA Contig254058 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2435:39142_1:Y:0:CTTGTA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7293:39626_1:Y:0:CTTGTA Contig452550 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14296:39943_1:N:0:CTTGTA Contig661824 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10618:40137_1:N:0:CTTGTA Contig151546 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4434:40303_1:N:0:CTTGTA Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4259:41208_1:N:0:CTTGTA Contig18792 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13658:41094_1:N:0:CTTGTA Contig82842 18737 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7427:41617_1:N:0:CTTGTA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16867:41591_1:N:0:TTTGTA Contig413930 577 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10030:41788_1:N:0:CTTGTA Contig315612 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8972:42688_1:Y:0:CTTGTA Contig369889 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11315:42687_1:N:0:CTTGTA Contig330510 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11389:44632_1:N:0:CTTGTA Contig174409 482 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13577:45431_1:N:0:CTTGTA Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4652:46718_1:N:0:CTTGTA Contig61662 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19853:47854_1:N:0:CTTGTA Contig685912 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5553:48006_1:N:0:CTTGTA Contig644353 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14988:49232_1:N:0:CTTGTA Contig437469 1037 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8686:50571_1:N:0:CTTGTA Contig277040 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16394:52496_1:N:0:CTTGTA Contig216473 924 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3118:53507_1:N:0:CTTGTA Contig91197 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16269:54244_1:N:0:CTTGTA Contig546583 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4379:55048_1:N:0:CTTGTA Contig449606 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7296:55571_1:N:0:CTTGTA Contig596312 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6417:55788_1:N:0:CTTGTA Contig459853 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14635:56265_1:Y:0:CTTGTA Contig353833 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7118:57745_1:N:0:CTTGTA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6628:58580_1:N:0:CTTGTA Contig661824 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13494:58942_1:N:0:CTTGTA Contig338717 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2805:59222_1:N:0:CTTATA Contig497260 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3385:59842_1:N:0:CTTGTA Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1855:60155_1:N:0:CTTGTA Contig12009 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6452:61743_1:N:0:CTTGTT Contig593721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3483:62293_1:N:0:CTTGTA Contig680045 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3968:62447_1:N:0:CTTGTA Contig545108 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3986:62829_1:N:0:CTTGTA Contig12962 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12721:63334_1:N:0:CTTGTA Contig346800 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1529:64483_1:N:0:CTTGTA Contig176415 851 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4087:64268_1:N:0:CTTGTA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19430:64750_1:N:0:CTTGTA Contig284072 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16113:67455_1:Y:0:CTTGTA Contig631273 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8053:68330_1:N:0:CTTGTA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10637:69677_1:N:0:CTTGTA Contig46387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10614:69830_1:N:0:CTTGTA Contig14864 143 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11471:69808_1:N:0:CTTGTA Contig52598 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18493:70372_1:N:0:CTTGTA Contig596500 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2222:71742_1:N:0:CTTGTA Contig56839 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10964:71916_1:N:0:CTTGTA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21091:73482_1:N:0:CTTGTA Contig51973 42970 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3414:75763_1:N:0:CTTGTA Contig351860 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3468:76175_1:N:0:CTTGTA Contig78583 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4119:76654_1:N:0:CTTGTA Contig128995 1224 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17206:77078_1:Y:0:CTTGTA Contig501995 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6328:77685_1:N:0:CTTGTA Contig71518 15906 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8334:80063_1:N:0:CTTGTA Contig558857 198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18587:80307_1:N:0:CTTGTA Contig520323 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13880:80538_1:N:0:CTTGTA Contig317546 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12812:81952_1:Y:0:CTTGTA Contig586737 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18641:81759_1:N:0:CTTGTA Contig314528 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5929:82305_1:N:0:CTTGTA Contig646447 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13281:84883_1:N:0:CTTGTA Contig66755 6166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19763:85869_1:N:0:CTTGTA Contig281402 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12835:86112_1:N:0:CTTGTA Contig98325 1133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5819:86722_1:N:0:CTTGTA Contig606220 1 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 683046 (68.30%) aligned 0 times 132019 (13.20%) aligned exactly 1 time 184935 (18.49%) aligned >1 times 31.70% overall alignment rate Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6685:86924_1:N:0:CTTGTA Contig394109 91 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 681207 (68.12%) aligned 0 times 133358 (13.34%) aligned exactly 1 time 185435 (18.54%) aligned >1 times 31.88% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 628316 (62.83%) aligned 0 times 144175 (14.42%) aligned exactly 1 time 227509 (22.75%) aligned >1 times 37.17% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 627588 (62.76%) aligned 0 times 144755 (14.48%) aligned exactly 1 time 227657 (22.77%) aligned >1 times 37.24% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_12_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_12_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 358405 Mapping efficiency: 35.8% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2131173 Total methylated C's in CpG context: 249510 Total methylated C's in CHG context: 7748 Total methylated C's in CHH context: 104849 Total methylated C's in Unknown context: 63 Total unmethylated C's in CpG context: 60833 Total unmethylated C's in CHG context: 433479 Total unmethylated C's in CHH context: 1274754 Total unmethylated C's in Unknown context: 355 C methylated in CpG context: 80.4% C methylated in CHG context: 1.8% C methylated in CHH context: 7.6% C methylated in Unknown context (CN or CHN): 15.1% Bismark completed in 0d 3h 52m 5s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_13_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_13_s456_trimmed.fq.gz to zr1394_13_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_13_s456_trimmed.fq.gz to zr1394_13_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_13_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_13_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_13_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_13_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1235:2169_1:N:0:AGTCAA 0 Contig33515_CT_converted 9473 0 31M * 0 0 GGTAAGTTTTGTTTTATTAATATGTTGTTGT FBFFFFFFFFFFFFFFFFFFFFFFFFFFFFF AS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:8A22 YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from zr1394_13_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1235:2169_1:N:0:AGTCAA 16 Contig156571_GA_converted 1587 1 31M * 0 0 ACAACAACATATTAATAAAACAAAACTTACC FFFFFFFFFFFFFFFFFFFFFFFFFFFFFBF AS:i:0 XS:i:0 XN:i:0 XM:i:0 XO:i:0 XG:i:0 NM:i:0 MD:Z:31 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from zr1394_13_s456_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1235:2169_1:N:0:AGTCAA 4 * 0 0 * * 0 0 AATAAATTTTATTTTATTAATATATCATCAC FBFFFFFFFFFFFFFFFFFFFFFFFFFFFFF YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from zr1394_13_s456_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1235:2169_1:N:0:AGTCAA 4 * 0 0 * * 0 0 AATAAATTTTATTTTATTAATATATCATCAC FBFFFFFFFFFFFFFFFFFFFFFFFFFFFFF YT:Z:UU >>> Writing bisulfite mapping results to zr1394_13_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_13_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17497:2561_1:N:0:AGTCAA Contig1096 33919 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17568:3933_1:Y:0:GGTCAA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3780:4807_1:N:0:AGTCAA Contig22621 6887 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6003:6589_1:N:0:AGTCAA Contig156268 729 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9433:6621_1:N:0:AGTCAA Contig384826 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19843:6920_1:N:0:AGTCCA Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13501:7103_1:N:0:AGTCAA Contig525149 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18720:8842_1:N:0:AGTCAA Contig578757 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3397:9713_1:N:0:AGTCAA Contig620474 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9476:10672_1:N:0:AGTCAA Contig338523 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3308:10887_1:N:0:AGTCAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5965:10755_1:N:0:AGTCAA Contig422858 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12188:11217_1:N:0:AGTCAA Contig164256 455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2077:11634_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14129:11948_1:N:0:AGTCAA Contig458554 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19112:12900_1:N:0:AGTCAA Contig416854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5575:14412_1:N:0:AGTCAA Contig215800 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7385:14744_1:N:0:AGTCAA Contig25964 8820 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10946:14749_1:N:0:AGTCAA Contig467553 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15267:14834_1:N:0:AGTCAA Contig98345 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2980:15874_1:N:0:AGTCAA Contig149115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13687:16587_1:N:0:AGTCAA Contig481475 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20518:16581_1:Y:0:AGTCAA Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12547:18964_1:N:0:AGTCAA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14823:19201_1:Y:0:AGTCCA Contig295380 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10375:19329_1:N:0:AGTCAA Contig549601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6396:19984_1:N:0:AGTCAA Contig181261 408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16400:20126_1:N:0:AGTCAA Contig321954 260 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16451:23804_1:N:0:AGTCAA Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4321:24650_1:N:0:AGTCAA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5440:24511_1:N:0:AGTCAA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15523:24791_1:N:0:AGTCAA Contig473646 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1413:25078_1:N:0:AGTCAA Contig503766 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13617:25358_1:N:0:AGTCAA Contig119588 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13534:26389_1:Y:0:AGTCAA Contig490857 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9133:27041_1:N:0:AGTCAA Contig160479 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1571:27401_1:N:0:AGTCAA Contig96316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10636:27386_1:N:0:AGTCAA Contig359524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10664:27839_1:Y:0:AGTTAA Contig58165 2667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15451:27852_1:N:0:AGTCAA Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3386:30245_1:N:0:AGTCAA Contig110739 1210 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18718:31295_1:N:0:AGTCAA Contig167634 6561 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5220:32866_1:N:0:AGTCAA Contig131018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14384:35202_1:N:0:AGTCAA Contig525149 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19392:36172_1:N:0:AGTCAA Contig132483 922 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8739:36428_1:Y:0:AGTCAA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4445:36599_1:N:0:AGTCAA Contig669559 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5342:36543_1:N:0:AGTCAA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13799:37165_1:N:0:AGTCAA Contig37616 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18141:37017_1:N:0:AGTCAA Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6731:37691_1:N:0:AGTCAA Contig316898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3107:37899_1:N:0:AGTCAA Contig64125 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2675:38498_1:N:0:AGTCAA Contig52826 8237 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17594:39026_1:N:0:AGTCAA Contig616886 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13624:39302_1:N:0:AGTCAA Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18299:40953_1:N:0:AGTCAA Contig316898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10580:41544_1:N:0:AGTCAA Contig319282 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7885:41879_1:N:0:AGTCAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16520:43346_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8934:43521_1:N:0:AGTCAA Contig541884 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12064:44136_1:N:0:AGTCAA Contig182 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13001:44203_1:N:0:AGTCAA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5763:45681_1:N:0:AGTCAA Contig90138 12435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8346:46916_1:N:0:AGTCAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14589:47721_1:N:0:AGTCAA Contig208872 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16653:47712_1:N:0:AGTCAA Contig174445 1315 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8499:48431_1:Y:0:AGTCAA Contig434401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1414:50197_1:N:0:AGTCAA Contig693896 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20903:50353_1:N:0:AGTCAA Contig247103 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11663:50664_1:Y:0:AGTCAA Contig589981 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7005:51242_1:N:0:AGTCAA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15709:51042_1:N:0:AGTCAA Contig309776 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4462:52199_1:N:0:AGTCAA Contig3564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5970:52793_1:N:0:AGTCAA Contig196551 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9949:53541_1:N:0:AGTCAA Contig647823 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10052:54006_1:N:0:AGTCAA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4011:54439_1:N:0:AGTCAA Contig81597 3922 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4733:54687_1:N:0:AGTCAA Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7038:54711_1:N:0:AGTCAA Contig96316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15895:54949_1:N:0:AGTCAA Contig647037 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4385:55596_1:N:0:AGTCAA Contig111698 1170 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10101:55933_1:N:0:AGTCAA Contig403699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13102:57073_1:N:0:AGTCAA Contig185923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10110:57876_1:N:0:AGTCAA Contig684887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14104:57857_1:N:0:AGTCAA Contig218335 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1300:59418_1:Y:0:AGTCCA Contig514826 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18786:59993_1:N:0:AGTCAA Contig566447 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8628:61482_1:N:0:AGTCAA Contig105852 1644 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10993:61905_1:N:0:AGTCAA Contig139112 1052 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19107:62791_1:N:0:AGTCAA Contig412623 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10162:63128_1:N:0:AGTCAA Contig64125 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6892:63718_1:N:0:AGTCAA Contig470670 677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13215:63868_1:N:0:AGTCAA Contig442296 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10984:64912_1:N:0:AGTCAA Contig489528 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2741:65048_1:N:0:AGTCAA Contig524515 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18545:65549_1:N:0:AGTCAA Contig54063 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11067:66711_1:N:0:AGTCAA Contig129461 2288 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8431:67432_1:N:0:AGTCAA Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16090:67745_1:N:0:AGTCAA Contig37938 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14612:68498_1:N:0:AGTCAA Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19023:68350_1:N:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16226:70316_1:N:0:AGTCAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15902:70895_1:N:0:AGTCAA Contig484692 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3913:71019_1:N:0:AGTCAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17343:71292_1:N:0:AGTCAA Contig668294 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13232:71765_1:N:0:AGTCAA Contig25196 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5591:72328_1:N:0:AGTCAA Contig682663 231 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2513:72698_1:N:0:AGTCAA Contig184372 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:21174:73177_1:N:0:AGTCAA Contig50279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6796:74062_1:N:0:AGTCAA Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4922:76200_1:N:0:AGTCAA Contig135255 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17351:76888_1:N:0:AGTCAA Contig414714 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6187:77341_1:N:0:AGTCAA Contig138423 7689 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17659:77504_1:N:0:AGTCAA Contig178294 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18283:80685_1:N:0:AGTCAA Contig634687 146 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3574:81242_1:Y:0:AGTCAA Contig71405 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19556:81253_1:Y:0:AGTCAA Contig298884 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3095:81614_1:Y:0:AGTCAA Contig562041 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10080:82132_1:N:0:AGTCAA Contig207701 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2961:82423_1:Y:0:AGTCAA Contig126007 850 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15812:83028_1:Y:0:AGTCAA Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16793:83177_1:N:0:AGTCAA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4335:83270_1:Y:0:AGTCAA Contig135041 2546 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13199:83405_1:N:0:AGTCAA Contig562041 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4242:84504_1:N:0:ATTCAA Contig693926 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2624:86172_1:N:0:AGTCAA Contig651649 128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20116:87943_1:N:0:AGTCTA Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16198:88157_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17233:90427_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4884:93059_1:N:0:AGTCAA Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13216:93616_1:Y:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17923:93978_1:N:0:AGTCAA Contig548903 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16630:94919_1:N:0:AGTCAA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9767:95977_1:N:0:AGTCAA Contig33174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13867:95917_1:N:0:AGTCAA Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19846:96042_1:N:0:AGTCAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8256:97485_1:N:0:AGTCAA Contig116847 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8478:97563_1:N:0:AGTCAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20527:97950_1:Y:0:AGTCAA Contig292419 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2038:99078_1:N:0:AGTCAA Contig659141 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9428:99781_1:N:0:AGTCAA Contig200556 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3819:2247_1:N:0:AGTCAA Contig73426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3904:2363_1:N:0:AGTCAA Contig178534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10460:2705_1:N:0:AGTCAA Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7827:2908_1:N:0:AGTCAA Contig464396 4661 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3396:3858_1:N:0:AGTCAA Contig292231 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12911:4365_1:N:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16928:4517_1:N:0:AGTCAA Contig27800 323 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19465:6204_1:N:0:AGTCAA Contig463613 154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18271:6918_1:N:0:AGTCAA Contig36652 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3969:7157_1:N:0:AGTCAA Contig310590 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18837:7675_1:N:0:AGTCAA Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5181:9275_1:N:0:AGTCAA Contig687715 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15584:9265_1:N:0:AGTCAA Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3338:9646_1:N:0:AGTCAA Contig29642 11843 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1649:11956_1:N:0:AGTCAA Contig96489 2461 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1672:13118_1:Y:0:AGTCAA Contig303333 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6215:13013_1:N:0:AGTCAA Contig244839 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9071:13318_1:N:0:AGTCAA Contig9376 1062 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14538:15176_1:N:0:AGTCAA Contig86415 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5729:15989_1:N:0:AGTCAA Contig166320 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12958:16952_1:N:0:AGTCAA Contig612188 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14660:17433_1:N:0:AGTCAA Contig121073 2718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17500:18728_1:N:0:AGTCAA Contig674417 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:21249:19550_1:N:0:AGTCAA Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8842:20142_1:N:0:AGTCAA Contig451459 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13169:20012_1:N:0:AGTCAA Contig134311 1416 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1749:20271_1:N:0:AGTCAA Contig160168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7692:20645_1:N:0:GGTCAA Contig590453 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2797:21072_1:N:0:AGTCAA Contig116318 1708 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17518:21669_1:N:0:AGTCAA Contig203714 397 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10096:23041_1:N:0:AGTCAA Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12828:23483_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14600:24157_1:N:0:AGTCAA Contig440458 144 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16092:24342_1:N:0:AGTCAA Contig53241 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13628:24883_1:Y:0:AGTCAA Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1391:25285_1:N:0:AGTCAA Contig252636 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6952:25916_1:N:0:AGTCAA Contig81775 1030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10334:27133_1:N:0:AGTCAA Contig609560 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6910:28964_1:Y:0:AGTCAA Contig31142 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7920:28836_1:N:0:AGTCAA Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7422:29052_1:N:0:AGTCAA Contig103867 3512 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19899:29115_1:N:0:AGTCAA Contig643484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5647:29990_1:N:0:AGTCAA Contig41362 194 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15394:29935_1:N:0:AGTCAA Contig522239 569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6406:30875_1:N:0:AGTCAA Contig655964 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9201:31844_1:N:0:AGTCAA Contig564163 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18940:31975_1:N:0:AGTCAA Contig130628 1632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15733:32088_1:N:0:AGTCAA Contig2834 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8328:32462_1:N:0:AGTCAA Contig582013 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10512:33006_1:N:0:AGTCAA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15163:34461_1:N:0:AGTCAA Contig329744 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4765:35644_1:Y:0:AGTCAA Contig635415 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18552:35513_1:N:0:AGTCAA Contig99487 1494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7297:35859_1:N:0:AGTCAA Contig169623 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14127:35907_1:N:0:TGTCAA Contig481198 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15656:36290_1:N:0:AGTCAA Contig11209 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20069:36919_1:N:0:AGTCAA Contig308581 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11810:37238_1:N:0:AGTCAA Contig218917 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17590:37387_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17966:38150_1:N:0:AGTCAA Contig143214 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1110:38268_1:N:0:AGTCAA Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5063:38609_1:N:0:AGTCAA Contig358108 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14549:38616_1:N:0:AGTCAA Contig656871 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8763:39473_1:N:0:AGTCAA Contig359762 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9722:40588_1:N:0:AGTCAA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16103:40659_1:N:0:AGTCAA Contig79766 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8831:40829_1:N:0:AGTCAA Contig541884 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10714:41200_1:N:0:AGTCAA Contig186481 2339 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3762:41925_1:Y:0:AGTCAA Contig557232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8072:42805_1:N:0:AGTCAA Contig309585 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6036:43664_1:N:0:AGTCAA Contig522741 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2196:44348_1:N:0:AGTCAA Contig539459 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14756:45646_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5006:46078_1:N:0:AGTCAA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18068:46132_1:N:0:AGTCAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2985:46782_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9544:47752_1:N:0:AGTCAA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17116:47939_1:N:0:AGTCAA Contig174714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8079:48978_1:N:0:AGTCAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10648:49321_1:Y:0:ATTCAA Contig203262 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10908:49421_1:N:0:AGTCAA Contig14819 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5079:49742_1:N:0:AGTCAA Contig30301 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9738:50857_1:N:0:AGTCAA Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8032:51600_1:N:0:AGTCAA Contig70164 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2958:52235_1:N:0:AGTCAA Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3008:52236_1:N:0:AGTCAA Contig344467 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15775:52011_1:N:0:AGTCAA Contig321227 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18691:52064_1:N:0:AGTCAA Contig61927 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4489:52581_1:N:0:AGTCAA Contig623017 367 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3914:53034_1:N:0:AGTCAA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14880:53020_1:N:0:AGTCAA Contig506709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3551:54248_1:N:0:AGTCAA Contig615489 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17805:54484_1:N:0:AGTCAA Contig58165 2668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11389:54705_1:N:0:AGTCAA Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9783:54812_1:N:0:AGTCAA Contig613563 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20661:55221_1:N:0:AGTCAA Contig367127 133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6198:56450_1:N:0:AGTCAA Contig463327 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8405:56351_1:N:0:AGTCAA Contig110648 1583 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1397:56986_1:Y:0:AGTCAA Contig338733 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10875:57851_1:N:0:AGTCAA Contig52134 9081 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20350:57960_1:N:0:AGTCAA Contig696097 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3809:59190_1:N:0:AGTCAA Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11054:59215_1:N:0:AGTCAA Contig628928 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11494:59427_1:N:0:AGTCAA Contig411764 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18608:59498_1:N:0:AGTCAA Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11030:59765_1:N:0:AGTCAA Contig30151 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10427:60562_1:Y:0:AGTCAA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7178:61455_1:N:0:AGTCAA Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10620:61380_1:N:0:AGTCAA Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3432:61920_1:Y:0:AGTCAA Contig164195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5777:62431_1:N:0:AGTCAA Contig31142 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7633:63436_1:N:0:AGTCAA Contig471635 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17609:64135_1:N:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14765:64722_1:N:0:AGTCAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4039:64894_1:N:0:AGTCAA Contig628480 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13255:65771_1:N:0:AGTCAA Contig55734 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11538:66143_1:N:0:AGTCAA Contig340164 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17517:66244_1:N:0:AGTCAA Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6737:66452_1:N:0:AGTCAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4091:67140_1:N:0:AGTCAA Contig342116 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4317:67142_1:N:0:AGTCAA Contig116384 2022 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16020:67085_1:N:0:AGTCAA Contig208302 464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10665:68483_1:N:0:AGTCAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9860:69885_1:N:0:AGTCAA Contig79433 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17995:69918_1:N:0:AGTCAA Contig453023 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4889:70064_1:N:0:AGTCAA Contig625821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18181:70078_1:N:0:AGTCAA Contig488792 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7025:70641_1:N:0:AGTCAA Contig482055 1403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13058:70541_1:N:0:AGTCAA Contig71714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9388:70863_1:N:0:CGTCAA Contig449270 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20376:70961_1:N:0:AGTCAA Contig360647 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18685:71026_1:Y:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18618:71113_1:N:0:AGTCAA Contig299789 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13938:71681_1:N:0:AGTCAA Contig216334 914 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8290:71973_1:Y:0:ATTCAA Contig146243 4291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20015:71988_1:N:0:AGTCAA Contig306106 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8988:72999_1:Y:0:AGTCAA Contig76913 1680 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13006:73390_1:N:0:AGTCAA Contig596989 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18268:73953_1:N:0:AGTCAA Contig419971 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5067:74431_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4693:74744_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11993:75271_1:N:0:AGTCAA Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17690:75939_1:N:0:AGTCAA Contig262267 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13919:77442_1:N:0:AGTCAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6138:77763_1:N:0:AGTCAA Contig599029 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17711:78099_1:N:0:AGTCAA Contig139084 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11952:78880_1:N:0:AGTCAA Contig76281 3127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4787:79153_1:N:0:AGTCAA Contig553163 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2117:79506_1:N:0:AGTCAA Contig1885 11044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16016:81126_1:N:0:GGTCAA Contig12584 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4845:81984_1:N:0:AGTCAA Contig136299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2037:82518_1:Y:0:AGTCAA Contig103678 2400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4549:82994_1:N:0:AGTCAA Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6122:83990_1:N:0:AGTCAA Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10096:84329_1:N:0:AGTCAA Contig579957 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1681:84680_1:N:0:AGTCAA Contig1975 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1487:85626_1:N:0:AGTCAA Contig416040 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9018:86936_1:N:0:AGTCAA Contig4739 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18591:86796_1:N:0:AGTCAA Contig268133 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5485:87079_1:N:0:AGTCAA Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3871:89174_1:N:0:AGTCAA Contig353098 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15939:89279_1:N:0:AGTCAA Contig119245 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17921:90742_1:N:0:AGTCAA Contig466975 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4919:90753_1:N:0:AGTCAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12003:91434_1:N:0:AGTCAA Contig268253 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17689:91990_1:N:0:AGTCAA Contig474092 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2044:93115_1:N:0:AGTCAA Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6586:93193_1:N:0:AGTCAA Contig212500 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19223:94175_1:N:0:AGTCAA Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8815:94470_1:N:0:AGTCAA Contig483174 1105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13182:96135_1:N:0:AGTCAA Contig81726 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9200:96911_1:N:0:AGTCAA Contig131147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12552:97975_1:N:0:AGTCAA Contig17411 2648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9669:98735_1:N:0:AGTCAA Contig492133 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14680:98525_1:N:0:AGTCAA Contig149497 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16251:98999_1:N:0:AGTCAA Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6862:99532_1:N:0:AGTCAA Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13072:2812_1:N:0:AGTCAA Contig156268 729 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:21217:2929_1:N:0:AGTCAA Contig406963 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17360:3257_1:N:0:AGTCAA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19660:3356_1:N:0:AGTCAA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11167:3686_1:N:0:AGTCAA Contig11056 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12151:3633_1:N:0:AGTCAA Contig585302 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17055:3605_1:N:0:AGTCAA Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1278:4087_1:N:0:AGTCAA Contig397890 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14730:4197_1:N:0:AGTCAA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13723:7501_1:N:0:AGTCAA Contig467912 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13587:8150_1:N:0:AGTCAA Contig130735 14292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13004:9714_1:Y:0:TGTCAA Contig74332 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15271:9847_1:N:0:AGTCAA Contig81214 5080 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17223:11665_1:N:0:AGTCAA Contig211079 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1539:12439_1:N:0:AGTCCA Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10621:12519_1:N:0:AGTCAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9057:14170_1:N:0:AGTCAA Contig573183 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15530:14431_1:N:0:AGTCAA Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8283:14538_1:N:0:AGTCAA Contig390534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17768:15666_1:N:0:AGTCAA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1926:16607_1:N:0:AGTCAA Contig19272 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3798:16830_1:N:0:AGTCAA Contig218396 892 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7354:16898_1:N:0:AGTCAA Contig312741 154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4359:17087_1:N:0:AGTCAA Contig52307 5627 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7883:17219_1:N:0:AGTCAA Contig410481 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14994:17397_1:Y:0:AGGCAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1311:17899_1:N:0:AGTCAA Contig299734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16510:18113_1:N:0:AGTCAA Contig36728 3140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9714:18791_1:N:0:AGTCAA Contig230486 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19002:20961_1:N:0:AGTCAA Contig367562 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7336:21293_1:N:0:AGTCAA Contig637676 526 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17926:21888_1:N:0:AGTCAA Contig79341 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20126:22717_1:N:0:AGTCAA Contig572368 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11517:22770_1:N:0:AGTCAA Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13521:22967_1:N:0:AGTCAA Contig5906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10741:23169_1:N:0:AGTCAA Contig649058 307 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4313:23266_1:N:0:AGTCAA Contig275048 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17895:24432_1:N:0:AGTCAA Contig161344 431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8904:24583_1:N:0:AGTCAA Contig126028 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12692:24989_1:N:0:AGTCAA Contig415339 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19955:24777_1:N:0:AGTCAA Contig212938 1395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20369:25013_1:N:0:AGTCAA Contig19201 17233 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11273:26541_1:N:0:GGTCAA Contig573598 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15410:26801_1:N:0:AGTCAA Contig501279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20879:27528_1:N:0:AGTCAA Contig116155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16691:27822_1:N:0:AGTCAA Contig347923 471 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10894:28313_1:N:0:AGTCAA Contig327050 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8004:28576_1:N:0:AGTCAA Contig660154 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1404:28860_1:N:0:AGTCAA Contig68560 2696 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11821:28900_1:N:0:AGTCAA Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9171:29004_1:N:0:AGTCAA Contig80833 2427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3390:29733_1:N:0:AGTCAA Contig344467 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6306:30548_1:N:0:AGTCAA Contig169127 2442 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8903:33371_1:N:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14581:33617_1:N:0:AGTCAA Contig575589 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2677:33876_1:N:0:AGTCAA Contig322890 228 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7937:33927_1:N:0:AGTCAA Contig382561 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8951:33928_1:N:0:AGTCAA Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5219:37168_1:N:0:AGTCAA Contig44932 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5368:37869_1:Y:0:AGTCAA Contig162875 1707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15865:37962_1:N:0:AGTCAA Contig542655 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3052:39580_1:N:0:AGTCAA Contig44707 8095 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1172:39942_1:N:0:AGTCAA Contig612643 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13695:40434_1:N:0:AGTCAA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17463:40725_1:N:0:AGTCAA Contig350621 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5527:41442_1:N:0:AGTCAA Contig171841 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19107:41878_1:N:0:AGTCAA Contig103546 3000 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3863:42264_1:N:0:AGTCAA Contig596928 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15616:42408_1:N:0:AGTCAA Contig658654 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3935:44100_1:N:0:AGTCAA Contig73251 13667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16432:44372_1:N:0:AGTCAA Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1161:45946_1:N:0:AGTCAA Contig217161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16689:46150_1:N:0:AGTCAA Contig193909 282 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6352:46333_1:N:0:AGTCAA Contig114294 1330 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13443:46488_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8195:46578_1:N:0:AGTCAA Contig359524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6050:47384_1:N:0:AGTCAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8598:47559_1:N:0:AGTCAA Contig13974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13345:51224_1:N:0:AGTCAA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19583:51335_1:N:0:AGTCAA Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12272:52685_1:N:0:AGTCAA Contig157663 3161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9503:53297_1:N:0:AGTCAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13824:53431_1:N:0:AGTCAA Contig281767 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3850:54436_1:N:0:AGTCAA Contig58165 2668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4115:55463_1:N:0:AGTCAA Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18539:55939_1:Y:0:AGTCAA Contig358839 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2889:57192_1:Y:0:AGTCAA Contig13629 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4953:57098_1:N:0:AGTCAA Contig273338 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10039:58151_1:N:0:AGTCAA Contig59893 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6665:58906_1:N:0:AGTCAA Contig12538 294 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9453:58915_1:N:0:AGTCAA Contig88381 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19875:58970_1:N:0:AGTCAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18077:59165_1:N:0:AGTCAA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14591:59410_1:N:0:AGTCAA Contig655290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7484:59622_1:N:0:AGTCAA Contig654843 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7515:59718_1:N:0:AGTCCA Contig14401 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20353:60151_1:Y:0:AGTCAA Contig51452 7800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6580:62536_1:N:0:AGTCAA Contig112712 1891 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8096:62961_1:N:0:AGTCAA Contig44839 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3624:63283_1:N:0:AGTCAA Contig663101 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:21302:63439_1:N:0:AGTCAA Contig154025 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15784:64273_1:N:0:AGTCAA Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8489:64632_1:N:0:AGTCAA Contig450046 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19425:64596_1:Y:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9970:64766_1:N:0:AGTCAA Contig135796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17616:64866_1:N:0:AGTCAA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12129:65156_1:N:0:AGTCAA Contig161111 1306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9983:65448_1:N:0:AGTCAA Contig504856 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15108:65606_1:N:0:AGTCAA Contig201334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11430:66670_1:Y:0:AGTCAA Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19194:67043_1:N:0:AGTCAA Contig23681 386 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19241:67684_1:Y:0:AGTCAA Contig246362 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15821:69193_1:N:0:AGTCAA Contig685360 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18177:69280_1:N:0:AGTCAA Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4907:69872_1:N:0:AGTCAA Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1364:70640_1:N:0:AGTCAA Contig310879 198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18129:71674_1:N:0:AGTCAA Contig622729 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8887:72178_1:N:0:AGTCAA Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1419:72492_1:N:0:AGTCAA Contig53344 7655 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12921:72865_1:N:0:AGTCAA Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13987:72826_1:N:0:AGTCAA Contig50825 6660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4497:73831_1:N:0:AGTCAA Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6345:73786_1:N:0:AGTCAA Contig96628 1445 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18662:73762_1:N:0:AGTCAA Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19434:73879_1:N:0:AGTCAA Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2848:74307_1:N:0:AGTCAA Contig312260 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10801:74372_1:Y:0:AGTCAA Contig522211 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10866:75341_1:N:0:AGTCAA Contig16979 527 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17654:75375_1:N:0:AGTCAA Contig4739 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6104:75580_1:N:0:AGTCAA Contig310442 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4330:76567_1:N:0:AGTCAA Contig19731 202 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5171:77172_1:N:0:AGTCAA Contig489528 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19658:77835_1:Y:0:AGTCAA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7517:78517_1:N:0:AGTCAA Contig226000 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8386:78673_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4449:79394_1:N:0:AGTCAA Contig216334 914 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13872:80466_1:N:0:AGTCAA Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6650:83629_1:N:0:AGTCAA Contig178534 1615 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7553:83591_1:N:0:AGTCAA Contig312803 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15213:83600_1:N:0:AGTCAA Contig499906 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15775:84247_1:N:0:AGTCAA Contig416854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17382:84970_1:N:0:AGTCAA Contig158616 1203 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2744:86569_1:N:0:AGTCAA Contig210365 353 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20707:86624_1:N:0:AGTCAA Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14603:87193_1:N:0:AGTCAA Contig312918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14843:88295_1:N:0:AGTCAA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20673:89655_1:N:0:AGTCAA Contig576375 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7378:90698_1:N:0:AGTCAA Contig192988 1666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8337:91649_1:N:0:AGTCAA Contig67161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1170:92807_1:N:0:AGTCAA Contig167634 6561 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19458:93884_1:N:0:AGTCAA Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3671:94649_1:N:0:AGTCAA Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13640:96251_1:N:0:AGTCAA Contig262108 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5382:97913_1:N:0:AGTCAA Contig5550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17307:98155_1:N:0:AGTCAA Contig420124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7876:98431_1:N:0:AGTCAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15873:98271_1:N:0:AGTCAA Contig559623 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13604:98611_1:N:0:AGTCAA Contig408476 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7764:99646_1:N:0:AGTCAA Contig650482 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3848:2618_1:N:0:AGTCAA Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3797:3175_1:N:0:AGTCAA Contig399618 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3895:3285_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4352:4648_1:N:0:AGTCAA Contig518894 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11149:5083_1:N:0:AGTCAA Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7784:5303_1:N:0:AGTCAA Contig143571 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10415:5862_1:N:0:AGTCAA Contig480629 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2092:6156_1:N:0:AGTCAA Contig418259 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15166:6413_1:N:0:AGTCAA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13163:7140_1:N:0:AGTCAA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5212:8397_1:Y:0:AGTCAC Contig959 31517 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20251:8484_1:N:0:AGTCAA Contig60365 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8638:8933_1:N:0:AGTCAA Contig2676 12116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12591:8822_1:N:0:AGTCAA Contig372964 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20432:9397_1:N:0:AGTCAA Contig59047 15899 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3854:12018_1:N:0:AGTCAA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10162:13244_1:N:0:AGTCAA Contig397837 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10539:13432_1:N:0:AGTCAA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12838:14410_1:N:0:AGTCAA Contig611751 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13012:14320_1:N:0:AGTCAA Contig356459 254 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12559:14597_1:N:0:AGTCAA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15856:14711_1:N:0:AGTCAA Contig313261 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11609:16109_1:N:0:AGTCAA Contig229216 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20046:16076_1:N:0:AGTCAA Contig335900 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15839:19817_1:N:0:AGTCAA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10823:20316_1:N:0:AGTCAA Contig65812 231 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13281:20267_1:N:0:AGTCAA Contig167826 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15700:20300_1:N:0:AGTCAA Contig373353 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11760:20664_1:N:0:AGTCAA Contig407611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20854:21129_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14948:22021_1:Y:0:AGTCAA Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15958:22377_1:N:0:AGTCAA Contig333135 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18579:22513_1:N:0:GGTCAA Contig36663 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7848:22887_1:N:0:AGTCAA Contig678828 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13908:22933_1:N:0:AGTCAA Contig405429 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14094:24443_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2044:24801_1:N:0:AGTCAA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10893:25166_1:N:0:AGTCAA Contig162591 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14355:25371_1:N:0:AGTCAA Contig12186 348 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5164:25677_1:N:0:AGTCAA Contig7770 2455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17601:25544_1:N:0:AGTCAA Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20470:26287_1:Y:0:AGTCAA Contig149033 7169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8982:26689_1:Y:0:CGTCAA Contig693896 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19658:27326_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7865:28433_1:N:0:AGTCAA Contig213739 1425 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19172:28275_1:N:0:AGTCAA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8406:28702_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15448:30677_1:N:0:AGTCAA Contig17322 788 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21311:30751_1:Y:0:AGTCAA Contig106550 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2680:32125_1:N:0:AGTCAA Contig549601 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19743:32043_1:N:0:AGTCAA Contig414714 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2343:33092_1:N:0:AGTCAA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17499:33470_1:N:0:AGTCAA Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18032:34424_1:N:0:AGTCAA Contig494808 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14018:35541_1:N:0:AGTCAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17602:36807_1:N:0:AGTCAA Contig211617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10551:37316_1:N:0:AGTCAA Contig53301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3424:38585_1:N:0:AGTCAA Contig177157 3484 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12543:38941_1:N:0:AGTCAA Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18720:40696_1:N:0:AGTCAA Contig617281 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10224:42150_1:N:0:AGTCAA Contig1803 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8999:43740_1:N:0:AGTCAA Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2679:43850_1:N:0:AGTCAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4551:43812_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8836:43777_1:N:0:AGTCAA Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6919:45172_1:N:0:AGTCAA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10535:45103_1:N:0:AGTCAA Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11893:45135_1:N:0:AGTCAA Contig607840 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7481:45416_1:N:0:AGTCAA Contig471648 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15522:45660_1:Y:0:AGTCCA Contig88015 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12336:46782_1:N:0:AGTCAA Contig184372 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20455:46834_1:Y:0:AGTCAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19004:48037_1:N:0:AGTCAA Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16734:49016_1:N:0:AGTCAA Contig362766 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19488:50299_1:N:0:AGTCAA Contig380031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13498:50687_1:N:0:AGTCAA Contig29281 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8717:51536_1:N:0:AGTCAA Contig154878 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5807:52199_1:N:0:AGTCAA Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17612:52217_1:N:0:AGTCAA Contig64591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11938:52515_1:N:0:AGTCAA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13837:52564_1:N:0:AGTCAA Contig657637 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3702:52903_1:N:0:AGTCAA Contig589742 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19097:52936_1:N:0:AGTCAA Contig384278 300 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19786:53366_1:N:0:AGTCAA Contig575772 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20663:53698_1:N:0:AGTCAA Contig211617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16895:54332_1:N:0:AGTCCA Contig275571 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18547:55989_1:Y:0:AGTCAA Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19141:57073_1:N:0:AGTCAA Contig131130 904 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12115:57801_1:N:0:AGTCAA Contig214355 2001 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15995:57843_1:N:0:AGTCAA Contig150033 5551 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21055:58062_1:N:0:AGTCAA Contig495762 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5547:58842_1:N:0:AGTCAA Contig81868 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16355:59404_1:N:0:AGTCAA Contig660486 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13757:59822_1:Y:0:AGTCAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8128:60123_1:N:0:AGTCAA Contig125243 1014 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20567:60647_1:N:0:AGTCAA Contig221491 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20813:60752_1:N:0:AGTCAA Contig292091 9069 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19563:61142_1:N:0:AGTCAA Contig465244 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7614:61433_1:N:0:AGTCAA Contig615839 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18187:61390_1:N:0:AGTCAA Contig621191 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3833:62640_1:N:0:AGTCAA Contig356767 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18678:62638_1:N:0:AGTCAA Contig457142 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20907:63591_1:N:0:AGTCAA Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9815:64126_1:N:0:AGTCAA Contig531891 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12753:65014_1:N:0:AGTCAA Contig613866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21125:65316_1:N:0:AGTCAA Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1850:66016_1:N:0:AGTCAA Contig46453 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9156:66184_1:N:0:AGTCAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7815:66748_1:N:0:AGTCAA Contig57360 6455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1312:67381_1:N:0:AGTCAA Contig57360 6453 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4968:68230_1:N:0:AGTCAA Contig382561 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10039:69087_1:N:0:AGTTAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17703:69162_1:N:0:AGTCAA Contig34065 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12430:69764_1:N:0:AGTCAA Contig146243 4291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8936:70249_1:N:0:AGTCAA Contig534659 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14576:71972_1:N:0:AGTCAA Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8163:72777_1:N:0:AGTCAA Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8568:72878_1:N:0:AGTCAA Contig20759 19586 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18804:74440_1:N:0:AGTCAA Contig136134 1505 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6442:74620_1:N:0:AGTCAA Contig39447 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13755:74968_1:N:0:AGTCAA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15118:75403_1:N:0:AGTCAA Contig402675 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14345:75899_1:N:0:AGTCAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21225:76305_1:Y:0:AGTCAA Contig390534 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18298:77167_1:N:0:AGTCAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10632:77456_1:N:0:AGTCAA Contig432445 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14998:77914_1:N:0:AGTCAA Contig159318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14145:78040_1:N:0:AGTCAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8509:78376_1:N:0:AGTCAA Contig43321 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13721:79345_1:N:0:AGTCAA Contig105481 1675 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13987:79478_1:N:0:AGTCAA Contig182 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18749:80115_1:Y:0:AGTTAA Contig469606 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3652:81126_1:N:0:AGTCAA Contig179216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17051:81518_1:Y:0:AGTCAA Contig305263 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15661:81932_1:N:0:AGTCAA Contig10508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18659:82493_1:N:0:AGTCAA Contig116155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9238:82644_1:N:0:AGTCAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5549:83906_1:N:0:AGTCAA Contig282825 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12336:84919_1:N:0:AGTCAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6477:85901_1:N:0:AGTCAA Contig276127 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7663:86200_1:N:0:AGTCAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9260:86574_1:N:0:AGTCAA Contig31504 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20654:86962_1:N:0:AGTCAA Contig195823 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7056:87242_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3420:88405_1:N:0:AGTCAA Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13280:88894_1:N:0:AGTCAA Contig509710 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6024:90988_1:N:0:AGTCAA Contig181318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17520:91136_1:N:0:AGTCAA Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1544:91483_1:N:0:AGTCAA Contig16979 526 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6494:91870_1:Y:0:AGTCAA Contig41269 25985 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21039:92341_1:N:0:AGTCAA Contig39729 4617 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13526:92744_1:N:0:AGTCAA Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4585:93240_1:N:0:AGTCAA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6604:95392_1:N:0:AGTCAA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17387:96518_1:N:0:AGTCAA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9232:97080_1:N:0:AGTCAA Contig503918 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21298:97446_1:N:0:AGTCAA Contig33210 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17200:97658_1:N:0:AGTCAA Contig47144 21850 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16571:98027_1:N:0:AGTCAA Contig289579 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17594:98286_1:N:0:AGTCAA Contig39302 12506 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20026:98316_1:Y:0:AGTCAA Contig341961 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16482:98897_1:N:0:AGTCAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3969:99203_1:N:0:AGTCAA Contig141848 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16905:99034_1:N:0:AGTCAA Contig469729 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2679:99748_1:N:0:AGTCAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6826:100258_1:N:0:AGTCAA Contig353860 332 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:18718:2292_1:N:0:AGTCAA Contig90507 3809 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:5289:3634_1:N:0:AGTCAA Contig690916 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12519:3548_1:N:0:AGTCAA Contig686581 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:16934:4750_1:N:0:AGTCAA Contig114129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:4803:5321_1:N:0:AGTCAA Contig474250 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:13581:5330_1:N:0:AGTCAA Contig479686 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:13830:5393_1:N:0:AGTCAA Contig650756 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:2851:5908_1:N:0:AGTCAA Contig250907 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12097:5843_1:N:0:AGTCAA Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:8951:8448_1:N:0:AGTCAA Contig666352 287 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:9611:8318_1:N:0:AGTCAA Contig323147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:6456:8592_1:N:0:AGTCCA Contig599203 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:6939:10530_1:N:0:AGTCAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:3802:11816_1:N:0:AGTCAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:9219:12388_1:N:0:AGTCAA Contig265607 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:11402:12468_1:N:0:AGTCAA Contig30970 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:4337:15375_1:N:0:AGTCAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:8606:15546_1:N:0:AGTCAA Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:14602:15748_1:N:0:AGTCAA Contig474664 156 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12367:16632_1:N:0:AGTCAA Contig647037 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:7767:17773_1:N:0:AGTCAA Contig640081 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:1761:18564_1:N:0:AGTCAA Contig251073 268 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:8265:20021_1:Y:0:AGTCTA Contig255054 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:7843:20292_1:N:0:AGTCAA Contig212938 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:14193:20354_1:Y:0:AGTCAA Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12530:21012_1:N:0:AGTCAA Contig318110 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:16772:21471_1:N:0:AGTCAA Contig113453 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:7240:21587_1:N:0:AGTCAA Contig123259 1530 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:3759:21928_1:N:0:AGTCAA Contig128926 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:4404:21786_1:N:0:AGTCAA Contig645184 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12199:22981_1:N:0:AGTCAA Contig353098 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:14180:23044_1:N:0:AGTCAA Contig58165 2669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:4400:23416_1:N:0:AGTCAA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:4701:23929_1:N:0:AGTCAA Contig544721 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:3941:24364_1:N:0:AGTCAA Contig258908 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:15492:24448_1:N:0:AGTCAA Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:5879:24636_1:N:0:AGTCAA Contig467912 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:13343:24693_1:N:0:AGTCAA Contig646532 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:18852:24732_1:N:0:AGTCAA Contig636222 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:3011:25280_1:N:0:AGTCAA Contig207582 280 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:20183:25600_1:N:0:AGTCAA Contig96744 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:8383:27369_1:N:0:AGTCAA Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12304:27387_1:N:0:AGTCAA Contig487716 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:11249:27740_1:N:0:AGTCAA Contig51452 7798 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:3601:28332_1:N:0:AGTCAA Contig498442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:5089:28528_1:N:0:AGTCAA Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:4596:28796_1:N:0:AGTCAA Contig214874 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:8732:29071_1:N:0:AGTCAA Contig80341 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:16530:29106_1:N:0:AGTCAA Contig205272 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:19613:29657_1:N:0:AGTCAA Contig637676 526 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:17845:29940_1:N:0:AGTCAA Contig197376 616 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:1809:30090_1:N:0:AGTCAA Contig210837 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:19453:32738_1:N:0:AGTCAA Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:10826:33139_1:N:0:AGTCAA Contig71903 18678 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:13586:34220_1:N:0:AGTCAA Contig58877 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:17846:34681_1:N:0:AGTCAA Contig201334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:18218:35771_1:N:0:AGTCAA Contig564182 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12510:36475_1:N:0:AGTCAA Contig488382 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:6673:37666_1:N:0:AGTCAA Contig10499 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:20100:38286_1:N:0:AGTCAA Contig353315 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:14168:39009_1:N:0:AGTCAA Contig677813 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:11552:39703_1:N:0:AGTCAA Contig179806 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:16119:39878_1:N:0:AGTCAA Contig6878 3121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:5842:41455_1:Y:0:AGTCAC Contig13552 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:7003:42487_1:N:0:AGTCAA Contig116541 1015 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:10981:42725_1:N:0:AGTCAA Contig204387 455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:13821:42746_1:N:0:AGTCAA Contig20442 18468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:14898:43058_1:N:0:AGTCAA Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:10087:44854_1:N:0:AGTCAA Contig663678 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:2685:45910_1:N:0:AGTCAA Contig588850 119 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:14991:46626_1:N:0:AGTCAA Contig133675 2921 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:1106:46814_1:N:0:AGTCAA Contig374586 1690 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:20249:47351_1:N:0:AGTCAA Contig25966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:2988:47618_1:N:0:AGTCAA Contig47022 13025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:10868:51642_1:N:0:AGTCAA Contig693728 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:9413:52187_1:N:0:AGTCAA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:20416:52302_1:N:0:AGTCAA Contig16917 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:8015:53360_1:N:0:AGTCAA Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:11243:53663_1:N:0:AGTCAA Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:17639:54390_1:N:0:AGTCAA Contig254888 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:1962:54801_1:N:0:AGTCAA Contig50387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:12888:56056_1:Y:0:AGTCAA Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1105:3902:56374_1:N:0:AGTCAA Contig373202 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 675397 (67.54%) aligned 0 times 121176 (12.12%) aligned exactly 1 time 203427 (20.34%) aligned >1 times 32.46% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 676865 (67.69%) aligned 0 times 120737 (12.07%) aligned exactly 1 time 202398 (20.24%) aligned >1 times 32.31% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 618891 (61.89%) aligned 0 times 132658 (13.27%) aligned exactly 1 time 248451 (24.85%) aligned >1 times 38.11% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 617711 (61.77%) aligned 0 times 133194 (13.32%) aligned exactly 1 time 249095 (24.91%) aligned >1 times 38.23% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_13_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_13_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 325367 Mapping efficiency: 32.5% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2030562 Total methylated C's in CpG context: 319312 Total methylated C's in CHG context: 8494 Total methylated C's in CHH context: 94067 Total methylated C's in Unknown context: 64 Total unmethylated C's in CpG context: 52114 Total unmethylated C's in CHG context: 416673 Total unmethylated C's in CHH context: 1139902 Total unmethylated C's in Unknown context: 366 C methylated in CpG context: 86.0% C methylated in CHG context: 2.0% C methylated in CHH context: 7.6% C methylated in Unknown context (CN or CHN): 14.9% Bismark completed in 0d 4h 11m 14s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_14_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_14_s456_trimmed.fq.gz to zr1394_14_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_14_s456_trimmed.fq.gz to zr1394_14_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_14_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_14_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_14_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_14_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1225:2220_1:N:0:AGTTCC 4 * 0 0 * * 0 0 TTATTTTTAAATTAAATTTATTTATTTTA FF>> Writing bisulfite mapping results to zr1394_14_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_14_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15220:2982_1:N:0:AGTTCC Contig81175 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9685:3413_1:N:0:AGTTCC Contig34874 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1719:3833_1:N:0:AGTTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5618:5417_1:N:0:AGTTCC Contig139396 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12001:5649_1:N:0:AGTTCC Contig52709 3816 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10339:6719_1:N:0:AGTTCC Contig68916 26691 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15306:7414_1:N:0:AGTTCC Contig111573 1281 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13870:7740_1:N:0:AGTTCC Contig323179 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10168:7990_1:N:0:AGTTCC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3645:8043_1:N:0:AGTTCC Contig358156 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3343:8523_1:N:0:AGTTCC Contig634687 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12951:8899_1:N:0:AGTTCC Contig693318 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10802:10334_1:N:0:AGTTCC Contig647037 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16298:10733_1:N:0:AGTTCC Contig87516 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3477:12035_1:N:0:AGTTCC Contig81214 5082 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19663:13174_1:N:0:AGTTCC Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13032:13523_1:N:0:AGTTTC Contig120726 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3097:16769_1:N:0:AGTTCC Contig456483 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2582:18901_1:N:0:AGTTCC Contig668420 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14931:19833_1:N:0:AGTTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2043:20892_1:N:0:AGTTCC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10108:20753_1:N:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1901:21033_1:N:0:AGTTCC Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8745:21148_1:N:0:AGTTCC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16893:21335_1:N:0:AGTTCC Contig130274 1430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1841:22080_1:N:0:AGTTCC Contig659727 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3278:22218_1:Y:0:AGTTCC Contig666626 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7089:22532_1:N:0:AGTTCC Contig194275 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4205:23019_1:N:0:AGTTCT Contig159318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4493:23324_1:N:0:AGCTCC Contig100450 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10227:23998_1:N:0:AGTTCC Contig160208 898 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12349:24433_1:N:0:AGTTCC Contig206626 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1626:27204_1:N:0:AGTTCC Contig295449 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15798:28219_1:Y:0:AGTTCC Contig22047 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19765:28147_1:N:0:AGTTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4570:28394_1:N:0:AGTTCC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11428:28549_1:N:0:AGTTCC Contig362242 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12827:28807_1:N:0:AGTTCC Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7333:29214_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10654:29035_1:N:0:AGTTCC Contig393265 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20575:29691_1:N:0:AGTTCC Contig263661 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8568:29926_1:N:0:AGTTCC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18384:29855_1:N:0:AGTTCC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17566:30170_1:N:0:AGTTCC Contig211743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7743:30755_1:N:0:AGTTCC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8734:30949_1:N:0:AGTTCC Contig411145 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4278:31258_1:N:0:AGTTCC Contig350161 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17020:32411_1:N:0:AGTTCC Contig598681 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11134:32686_1:N:0:AGTTCC Contig56357 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9234:32938_1:N:0:AGTTCC Contig108714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8037:33182_1:N:0:AGTTCC Contig663477 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18715:34059_1:N:0:AGTTCC Contig1313 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4468:34546_1:N:0:AGTTCC Contig274326 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15234:34854_1:N:0:TGTTCC Contig669504 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12920:36398_1:N:0:AGTTCC Contig109200 2582 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18906:36616_1:N:0:AGTTCC Contig97707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10918:37740_1:N:0:AGTTCC Contig225020 271 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19652:37533_1:N:0:AGTTCC Contig278658 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14749:38717_1:N:0:AGTTCC Contig216473 921 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19104:38502_1:N:0:AGTTCC Contig524515 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12926:38783_1:N:0:AGTTCC Contig544516 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13206:39421_1:N:0:AGTTCC Contig587871 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10102:40131_1:N:0:AGTTCC Contig186373 253 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19844:40218_1:N:0:AGTTCC Contig89673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6414:40675_1:N:0:AGTTCC Contig197406 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15309:40817_1:N:0:AGTTCC Contig472300 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19452:40876_1:N:0:AGTTCC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10991:41115_1:N:0:AGTTCC Contig644874 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13161:41217_1:N:0:AGTTCC Contig248693 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10007:41278_1:N:0:AGTTCC Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17216:41946_1:N:0:AGTTCC Contig16217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13978:42344_1:N:0:AGTTCC Contig68794 11662 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3264:42551_1:N:0:AGTTCC Contig668211 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16893:42607_1:N:0:AGTTCC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17150:42911_1:N:0:AGTTCC Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19865:42971_1:N:0:AGTTCC Contig648674 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3421:43257_1:N:0:AGTTCC Contig434536 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20320:43593_1:N:0:AGTTCC Contig92446 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5026:44941_1:N:0:AGTTCC Contig175537 2146 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10152:46821_1:N:0:AGTTCC Contig529365 168 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10963:46761_1:N:0:AGTTCC Contig281876 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17145:47363_1:N:0:AGTTCC Contig72622 3323 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5394:48982_1:N:0:AGTTCC Contig26614 14405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9037:48850_1:N:0:AGTTCC Contig254585 309 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1823:49338_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12934:49646_1:N:0:AGTTCC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14703:50087_1:N:0:AGTTCC Contig523083 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5778:50305_1:N:0:AGTTCC Contig78851 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1943:50799_1:N:0:AGTTCC Contig535502 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9981:54122_1:N:0:AGTTCC Contig129852 998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16685:54083_1:N:0:AGTTCC Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15075:54344_1:N:0:AGTTCC Contig258051 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17233:54374_1:N:0:AGTTCC Contig96158 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9727:55241_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11975:56146_1:N:0:AGTTCC Contig191390 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7177:56424_1:N:0:AGTTCC Contig205919 461 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20012:56400_1:N:0:AGTTCC Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12932:57104_1:Y:0:AGTTCC Contig526229 213 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20811:57184_1:N:0:AGTTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5742:57506_1:N:0:AGTTCC Contig515112 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1742:61329_1:N:0:AGTTCC Contig282724 200 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4446:61357_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4258:61440_1:N:0:AGTTCC Contig623481 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18255:61401_1:Y:0:AGTTCC Contig378747 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12650:61726_1:N:0:AGTTCC Contig686402 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6886:62404_1:N:0:AGTTCC Contig222380 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16381:62474_1:N:0:AGTTCC Contig489528 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4666:63137_1:N:0:AGTTCC Contig118385 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13610:63094_1:N:0:AGTTCC Contig447097 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8587:64080_1:N:0:AGTTCC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18369:65174_1:N:0:AGTTCC Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5125:65461_1:N:0:AGTTCC Contig20759 19586 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11167:68450_1:N:0:AGTTCC Contig611574 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13364:68444_1:N:0:AGTTCC Contig678818 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1367:68560_1:N:0:AGTTCC Contig217765 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20918:68619_1:N:0:AGTTCC Contig690012 192 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19776:68921_1:N:0:AGTTCC Contig372926 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2173:69635_1:N:0:AGTTCC Contig598681 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13098:69678_1:N:0:AGTTCC Contig379730 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15599:70487_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17404:71374_1:N:0:AGTTCC Contig19272 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11209:71895_1:N:0:AGTTCC Contig591323 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11553:71954_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7058:72328_1:N:0:AGTTCC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10777:72401_1:N:0:AGTTCC Contig46170 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17082:72276_1:N:0:AGTTCC Contig97601 1772 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2298:72673_1:N:0:AGTTCC Contig158771 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18571:72877_1:Y:0:AGTTCC Contig638578 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6287:73654_1:N:0:AGTTCC Contig212938 1395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8152:73545_1:N:0:AGTTCC Contig300940 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11549:73713_1:N:0:AGTTCC Contig91220 7579 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8766:73799_1:N:0:AGTTCC Contig738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19770:73987_1:N:0:AGTTCC Contig303073 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1162:74401_1:N:0:AGATCC Contig223324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2287:74741_1:N:0:AGTTCC Contig306209 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20111:74521_1:N:0:AGTTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15918:75240_1:Y:0:AGTTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13371:75634_1:Y:0:AGTTCC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17329:76173_1:N:0:AGTTCC Contig13618 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3086:78195_1:N:0:AGTTCC Contig640542 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7426:79525_1:N:0:AGTTCC Contig13055 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18248:80496_1:N:0:AGTTCC Contig523940 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12639:80944_1:N:0:AGTTCC Contig376910 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13018:80949_1:N:0:AGTTCC Contig440379 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15666:80927_1:Y:0:ATTTCC Contig63668 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10451:81221_1:N:0:AGTTCC Contig49120 4597 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1438:81509_1:N:0:AGTTCC Contig44723 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11307:81749_1:N:0:AGTTCC Contig643428 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7553:82034_1:N:0:AGTTCC Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4378:82398_1:Y:0:ATTTCC Contig557701 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3027:83740_1:N:0:AGTTCC Contig624956 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6555:83985_1:N:0:AGTTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13063:83897_1:N:0:AGTTCC Contig158199 1030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11858:84321_1:Y:0:AGTTCC Contig126771 1598 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2934:84684_1:N:0:AGTTCC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16019:84607_1:N:0:AGTTCC Contig566172 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4427:84792_1:N:0:AGTTCC Contig477275 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10407:85118_1:N:0:AGTTCC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7026:85938_1:N:0:AGTTCC Contig50279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15530:85821_1:N:0:AGTTCC Contig55400 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15906:85984_1:N:0:AGTTCC Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15105:86626_1:N:0:AGTTCC Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13473:86941_1:N:0:AGTTCC Contig120578 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14716:87486_1:Y:0:AGTTCA Contig187521 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18946:87835_1:N:0:AGTTCC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15740:88046_1:N:0:AGTTCC Contig684398 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2167:88393_1:N:0:AGTTCC Contig668211 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14082:88301_1:N:0:AGTTCC Contig499597 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20122:88385_1:N:0:AGTTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7241:89706_1:N:0:AGTTCC Contig403933 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10238:89865_1:N:0:AGTTCC Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20453:89785_1:N:0:AGTTCC Contig526285 440 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18435:90372_1:N:0:AGTTCC Contig679043 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3578:90892_1:N:0:AGTTCC Contig607257 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6954:91806_1:Y:0:GGTTCC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15502:92478_1:N:0:AGTTCC Contig212116 3039 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20703:92809_1:N:0:AGTTCC Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6843:93417_1:N:0:AGTTCC Contig490857 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11893:93898_1:N:0:AGTTCC Contig631527 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20584:95211_1:N:0:AGTTCC Contig122097 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20294:95253_1:N:0:AGTTCC Contig26043 300 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17004:95818_1:N:0:AGTTCC Contig169623 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9243:96076_1:N:0:AGTTCC Contig189958 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4198:96688_1:N:0:AGTTCC Contig108626 6734 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14027:96597_1:N:0:AGTTCC Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21027:97795_1:N:0:AGTTCC Contig600071 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9778:98237_1:Y:0:AGTTCC Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2683:98339_1:N:0:AGTTCC Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1150:98855_1:N:0:AGTTCC Contig549070 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18959:98801_1:N:0:AGTTCC Contig668257 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14781:99205_1:N:0:AGTTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17200:99225_1:N:0:AGTTCC Contig150484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12314:99343_1:N:0:AGTTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19860:99449_1:N:0:AGTTCC Contig146592 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4269:99697_1:N:0:AGTTCC Contig58608 3181 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10213:100035_1:N:0:AGTTCC Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15866:2340_1:N:0:AGTTCC Contig98010 1760 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5381:3122_1:N:0:AGTTCC Contig149497 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16145:3312_1:N:0:AGTTCC Contig70548 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15236:3953_1:N:0:AGTTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8365:4820_1:Y:0:AGTTCC Contig133806 755 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10481:5260_1:N:0:AGTTCC Contig397895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3094:5837_1:Y:0:AGTTCC Contig442003 193 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21053:6822_1:N:0:AGTTCC Contig225459 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17986:7233_1:N:0:AGTTCC Contig671388 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9040:7502_1:N:0:AGTTCC Contig358096 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18199:7585_1:N:0:AGTTCC Contig124133 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11609:7754_1:N:0:AGTTCC Contig66916 20597 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4936:8446_1:N:0:AGTTCC Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19041:8427_1:N:0:AGTTCC Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6702:8697_1:N:0:CGTTCC Contig364364 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16425:8727_1:N:0:AGTTCC Contig144426 1991 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19789:8833_1:N:0:AGTTCC Contig631354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3487:9495_1:N:0:AGTTCC Contig181423 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13067:9736_1:N:0:AGTTCC Contig13141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16472:9675_1:N:0:AGTTCC Contig622176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20324:9665_1:N:0:AGTTCC Contig310256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13354:10209_1:N:0:AGTTCC Contig556512 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5512:10872_1:N:0:AGTTCC Contig22595 252 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4776:11043_1:N:0:AGTTCC Contig690047 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11374:11865_1:N:0:AGTTCC Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13071:11951_1:N:0:AGTTCC Contig322052 403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12003:12081_1:N:0:AGTTCC Contig477220 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13902:12155_1:N:0:AGTTCC Contig393086 218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19435:12399_1:N:0:AGTTCC Contig497089 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7650:12633_1:N:0:GGTTCC Contig38412 5426 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12921:12936_1:N:0:AGTTCC Contig64591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13205:12755_1:N:0:AGTTCC Contig333135 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11191:13447_1:N:0:AGTTCC Contig160763 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20978:13487_1:N:0:AGTTCC Contig226266 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15068:13726_1:N:0:AGTTCC Contig560797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5945:13768_1:N:0:AGTTCC Contig464252 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10294:13881_1:N:0:CGTTCC Contig14394 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16057:13913_1:N:0:AGTTCC Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5340:14192_1:N:0:AGTTCC Contig112911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17153:15008_1:N:0:AGTTCC Contig79341 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8379:15337_1:Y:0:AGTTCC Contig353823 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6270:15738_1:N:0:AGTTCC Contig27057 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12296:16376_1:N:0:AGTTCC Contig80 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10553:17443_1:Y:0:GGTTCC Contig673444 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12270:17682_1:N:0:AGTTCC Contig274502 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6467:17869_1:N:0:AGTTCC Contig213471 605 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14690:18413_1:N:0:AGTTCC Contig50451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19589:18890_1:Y:0:AGTTCC Contig647292 141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14776:19391_1:N:0:AGTTCC Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8387:19591_1:N:0:CGTTCC Contig245148 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16164:21584_1:N:0:AGTTCC Contig33174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10154:21769_1:N:0:AGTTCC Contig260317 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19883:21789_1:N:0:AGTTCC Contig3421 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7026:23017_1:N:0:AGTTCC Contig599588 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18948:23013_1:Y:0:AGTTCC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15458:23933_1:N:0:AGTTCC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3897:24127_1:N:0:AGTTCC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6665:24137_1:N:0:AGTTCC Contig415892 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3884:24344_1:N:0:AGTTCC Contig16579 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7378:24966_1:N:0:AGTTCC Contig397090 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14738:24855_1:Y:0:AGTTCC Contig640548 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7260:25786_1:N:0:AGTTCC Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15107:25913_1:N:0:AGTTCC Contig33770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14740:26312_1:N:0:AGTTCC Contig172404 582 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16469:26715_1:N:0:AGTTCC Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3639:27216_1:N:0:AGTTCC Contig9424 2289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12756:27643_1:N:0:AGTTCC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3376:28222_1:N:0:AGTTCC Contig553632 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8226:29156_1:N:0:AGTTCC Contig302384 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7885:29611_1:N:0:AGTTCC Contig148650 10856 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14096:30814_1:N:0:AGTTCC Contig181686 885 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6533:31901_1:N:0:AGTTCC Contig638128 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15984:32047_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20439:33826_1:N:0:AGTTCC Contig602782 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14547:34513_1:N:0:AGTTCC Contig326172 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15001:34665_1:Y:0:AGTTCC Contig586329 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13791:34850_1:N:0:AGTTCC Contig389805 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11197:36230_1:N:0:AGTTCC Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18834:36093_1:N:0:AGTTCC Contig222380 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5396:36605_1:N:0:AGTTCT Contig556796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13377:36844_1:N:0:AGTTCC Contig74821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11721:37443_1:N:0:AGTTCC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1554:37581_1:N:0:AGTTCC Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16017:37853_1:N:0:AGTTCC Contig92446 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5656:38312_1:N:0:AGTTCC Contig115469 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10719:38487_1:N:0:AGTTCC Contig34929 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6218:38692_1:N:0:AGTTCC Contig650756 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8907:38696_1:N:0:AGTTCC Contig10474 384 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3587:38871_1:N:0:AGTTCC Contig290392 374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14522:39404_1:N:0:AGTTCC Contig523042 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9298:39512_1:N:0:AGTTCC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13601:40074_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9834:40885_1:N:0:AGTTCC Contig577212 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14736:41394_1:N:0:AGTTCC Contig393086 217 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9006:41662_1:N:0:AGTTCC Contig332479 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14938:41969_1:N:0:AGTTCC Contig25963 18154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11228:42095_1:N:0:AGTTCC Contig82672 4104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13607:42791_1:N:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3937:43174_1:N:0:AGTTCC Contig906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21214:43795_1:N:0:AGTTCC Contig368699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15585:44034_1:N:0:AGTTCC Contig34874 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19229:44293_1:N:0:AGTTCC Contig390368 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13336:44746_1:N:0:AGTTCC Contig36400 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7182:44753_1:N:0:AGTTCC Contig537351 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11689:46041_1:N:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17958:46497_1:N:0:AGTTCC Contig5550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18794:46313_1:N:0:AGTTCC Contig417026 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19272:46479_1:N:0:AGTTCC Contig202006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10196:48247_1:N:0:AGTTCC Contig661354 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6092:48984_1:Y:0:AGTTCA Contig11067 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8024:50055_1:N:0:AGTTCC Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15113:50109_1:N:0:AGTTCC Contig294960 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6718:50571_1:N:0:TGTTCC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7241:50937_1:N:0:AGTTCC Contig116171 1627 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20397:52319_1:N:0:AGTTCC Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21107:52529_1:Y:0:AGTTCC Contig413701 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11165:52828_1:N:0:AGTTCC Contig114129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14197:53013_1:N:0:AGTTCC Contig310701 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17633:53209_1:N:0:AGTTCC Contig480665 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2284:53692_1:N:0:AGTTCT Contig672106 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11305:53777_1:N:0:AGTTCC Contig9077 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7737:56220_1:N:0:AGTTCC Contig2496 16443 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4422:56489_1:N:0:AGTTCC Contig520159 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9715:57141_1:Y:0:AGTTCC Contig616875 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2645:58139_1:N:0:AGTTCC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8072:58321_1:N:0:AGTTCC Contig274373 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18128:58475_1:N:0:AGTTCC Contig13055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10250:58615_1:N:0:AGTTCC Contig147039 4354 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7176:58879_1:N:0:AGTTCC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20409:60892_1:N:0:AGTTCC Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21123:63458_1:N:0:AGTTCC Contig142177 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15789:64029_1:Y:0:AGTTCC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18321:64532_1:Y:0:AGTTCC Contig339031 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18891:64635_1:N:0:AGTTCC Contig242785 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8992:64802_1:N:0:AGTTCC Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1446:65508_1:N:0:AGTTCC Contig539920 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13843:66202_1:N:0:AGTTCC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15856:66217_1:Y:0:AGTTCC Contig162640 610 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12823:66857_1:N:0:AGTTCC Contig416854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13777:66848_1:N:0:AATTCC Contig77705 4547 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9496:67313_1:N:0:AGTTCC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8905:68303_1:N:0:AGTTCC Contig178752 655 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13982:68416_1:N:0:AGTTCC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9037:68509_1:Y:0:AGTTCC Contig146920 1424 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1369:68987_1:N:0:AGTTCC Contig228348 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3374:69874_1:N:0:AGTTCC Contig268089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11288:69993_1:N:0:AGTTCC Contig21802 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16099:70474_1:N:0:AGTTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16448:70518_1:N:0:AGTTCC Contig55323 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16133:71029_1:N:0:AGTTCC Contig393887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18906:71285_1:N:0:AGTTCC Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8904:72482_1:N:0:AGTTCC Contig24479 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17767:72269_1:N:0:AGTTCC Contig575589 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20522:72507_1:N:0:AGTTCC Contig58704 16307 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15540:73152_1:N:0:AGTTCC Contig333608 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14244:73600_1:N:0:AGTTCC Contig184321 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8583:73894_1:N:0:AGTTCC Contig238718 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12920:73962_1:N:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14432:75686_1:N:0:AGTTCC Contig353613 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15239:76792_1:Y:0:AGTTCC Contig128926 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18287:76991_1:N:0:AGTTCC Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6802:77496_1:Y:0:AGTTCC Contig658718 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4795:77940_1:N:0:AGTTCC Contig504386 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6724:79424_1:N:0:AGTTCC Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2147:81283_1:N:0:AGTTCC Contig593413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20081:81464_1:N:0:AGTTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8533:81892_1:N:0:AGTTCC Contig145340 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11877:81823_1:N:0:AGTTCC Contig186395 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11490:82213_1:Y:0:AGTTCC Contig220136 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16357:83595_1:N:0:AGTTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9768:83772_1:N:0:AGTTCC Contig37754 23190 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15589:83979_1:N:0:AGTTCC Contig577487 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9592:84238_1:N:0:AGTTCC Contig50825 6660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14123:84901_1:N:0:AGTTCC Contig679043 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6166:85912_1:N:0:AGTTCC Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6560:86307_1:N:0:AGTTCC Contig22752 6549 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7407:86641_1:N:0:AGTTCC Contig90242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8108:87298_1:N:0:AGTTCC Contig34065 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2463:87704_1:N:0:AGTTCC Contig492902 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7686:87662_1:N:0:AGTTCC Contig414714 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10237:88086_1:N:0:AGTTCC Contig100534 2683 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16872:88235_1:N:0:AGTTCC Contig426579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4441:89054_1:N:0:AGTTCC Contig7410 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16318:89158_1:N:0:AGTTCC Contig189406 295 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19796:90245_1:N:0:AGTTCC Contig4608 19233 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9340:90605_1:N:0:AGTTCC Contig100996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17851:90844_1:N:0:AGTTCC Contig285608 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10950:92356_1:N:0:AGTTCC Contig217984 216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8827:93068_1:N:0:AGTTCC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17499:93640_1:N:0:AGTTCC Contig436831 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9391:93996_1:N:0:AGTTCC Contig92446 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16419:93871_1:N:0:AGTTCC Contig391011 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5300:94103_1:N:0:AGTTCC Contig207232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6103:95332_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8890:95346_1:Y:0:AGTTCC Contig680404 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15103:95353_1:N:0:AGTTCC Contig281767 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1136:96246_1:N:0:AGTTCC Contig538223 407 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15381:97163_1:N:0:AGTTCC Contig23581 10005 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17156:97370_1:N:0:AGTTCC Contig264462 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16872:97737_1:N:0:AGTTCC Contig421428 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3837:99634_1:N:0:AGTTCC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18995:99784_1:N:0:AGTTCC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5854:100114_1:N:0:AGTTCC Contig268133 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16021:2384_1:Y:0:AGTTCC Contig156621 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5167:2745_1:Y:0:AGTTCC Contig684320 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17633:3390_1:N:0:AGTTCC Contig607317 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20197:3739_1:N:0:AGTTCC Contig156253 817 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8763:4651_1:N:0:AGTTCC Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10503:4990_1:N:0:AGTTCC Contig338717 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5877:5135_1:N:0:AGTTCC Contig631531 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6215:5207_1:N:0:AGTTCC Contig4474 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7348:5392_1:N:0:AGTTCC Contig335792 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5746:5965_1:Y:0:AGTTCC Contig424300 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9043:5959_1:N:0:AGTTCC Contig485131 205 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19812:5913_1:N:0:AGTTCC Contig242743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2163:6409_1:N:0:AGTTCC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5379:6458_1:N:0:AGTTCC Contig142 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5634:6383_1:N:0:AGTTCC Contig158671 2622 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16389:7599_1:N:0:AGTTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2023:7999_1:N:0:AGTTCC Contig655851 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5522:7829_1:N:0:AGTTCC Contig131043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19567:7959_1:N:0:AGTTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15220:8090_1:N:0:AGTTCC Contig659271 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11073:8306_1:N:0:AGTTCC Contig277199 174 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7576:8797_1:N:0:AGTTCC Contig71385 5285 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10567:9107_1:N:0:AGTTCC Contig490865 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5026:9549_1:N:0:AGTTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16263:9847_1:N:0:AGTTCC Contig284153 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6129:10484_1:N:0:AGTTCC Contig130628 1632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13292:10548_1:N:0:AGTTCC Contig207538 777 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6296:12451_1:N:0:AGTTCC Contig621317 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11897:12747_1:N:0:AGTTCC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17102:13698_1:N:0:AGTTCC Contig480842 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8319:14191_1:N:0:AGTTCC Contig277425 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11727:14200_1:N:0:AGTTCC Contig219953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7298:14343_1:N:0:AGTTCC Contig245080 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10548:14763_1:N:0:AGTTCC Contig107155 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8598:16040_1:N:0:AGTTCC Contig334159 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3446:16719_1:N:0:AGTTCC Contig479697 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8151:16967_1:N:0:AGTTCC Contig76022 3417 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11076:16845_1:N:0:AGTTCC Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2488:17332_1:N:0:AGTTCC Contig211522 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8370:17393_1:N:0:AGTTCC Contig116155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9293:17699_1:N:0:AGTTCC Contig13618 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16139:17726_1:N:0:AGTTCC Contig271503 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17524:18096_1:N:0:AGTTCC Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7377:18817_1:N:0:AGTTCC Contig361754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13693:19348_1:Y:0:AGTTCC Contig631683 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15930:19251_1:Y:0:TGTTCC Contig466029 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20950:19796_1:Y:0:AGTTCC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16486:20073_1:N:0:AGTTCC Contig433314 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10117:20562_1:N:0:AGTTCC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12053:21650_1:N:0:AGTTCC Contig252085 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6568:22014_1:N:0:AGTTCC Contig90174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12929:22953_1:N:0:AGTTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17657:22974_1:N:0:AGTTCC Contig18716 78246 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20718:23107_1:N:0:AGTTCC Contig134311 1416 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12374:23690_1:N:0:AGTTCC Contig587005 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15381:23541_1:N:0:AGTTCC Contig631683 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2331:24415_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10765:24777_1:N:0:AGTTCC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2272:25433_1:N:0:AGTTCC Contig32746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7092:25260_1:N:0:AGTTCC Contig502281 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1331:25574_1:N:0:AGTTCC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16272:25742_1:N:0:AGTTCC Contig112066 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17021:25615_1:N:0:AGTTCC Contig76372 4477 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1714:25853_1:N:0:AGTTCC Contig419389 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17515:26093_1:N:0:AGTTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11441:26494_1:N:0:AGTTCC Contig512783 3456 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18095:26801_1:N:0:AGTTCC Contig119588 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7503:27133_1:N:0:AGTTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12949:27308_1:N:0:AGTTCC Contig597749 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12505:27568_1:N:0:AGTTCC Contig9947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15045:28722_1:N:0:AGTTCC Contig128484 784 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7773:29051_1:N:0:AGTTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19619:29259_1:N:0:AGTTCC Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9766:31129_1:N:0:AGTTCC Contig47884 17495 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3712:31440_1:N:0:AGTTCC Contig337260 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7028:31408_1:N:0:AGTTCC Contig313799 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2292:31844_1:N:0:AGTTCA Contig202172 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2067:32113_1:N:0:AGTTCC Contig165520 473 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20253:32370_1:N:0:AGTTCC Contig554281 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10232:33179_1:N:0:AGTTCC Contig602816 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1666:33416_1:Y:0:AGTTCC Contig628700 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19288:35613_1:N:0:AGTTCC Contig292231 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1631:36190_1:N:0:AGTTCC Contig63841 5638 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18058:36280_1:N:0:AGTTCC Contig174714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17805:36600_1:N:0:AGTTCC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16202:36756_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11567:37105_1:N:0:AGTTCC Contig654167 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1924:37901_1:N:0:AGTTCC Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7060:38398_1:N:0:AGTTCC Contig558169 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18034:38455_1:N:0:AGTTCC Contig358498 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4980:39323_1:N:0:AGTTCC Contig62 45655 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17826:39477_1:N:0:AGTTCC Contig361754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19972:39415_1:N:0:AGTTCC Contig188415 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13072:39745_1:N:0:AGTTCC Contig62685 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20068:39872_1:N:0:AGTTCC Contig9424 2289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6537:40908_1:Y:0:AGTTCC Contig19201 17235 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10666:40775_1:N:0:AGTTCC Contig341161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12098:42478_1:N:0:AGTTCC Contig23164 9273 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21218:42291_1:N:0:AGTTCC Contig367229 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7825:42571_1:N:0:AGTTCC Contig178534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7150:42960_1:N:0:AGTTCC Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8341:42942_1:N:0:AGTTCC Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6861:43075_1:N:0:AGTTCC Contig34827 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14157:44041_1:N:0:AGTTCC Contig330816 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3042:44965_1:N:0:AGTTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6932:44771_1:N:0:AGTTCC Contig182676 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14066:44773_1:N:0:AGTTCC Contig345930 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19214:45183_1:N:0:AGTTCC Contig123927 1673 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19630:45161_1:N:0:AGTTCC Contig183570 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2911:45296_1:N:0:AGTTCC Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6653:45552_1:N:0:AGTTCC Contig130628 1633 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4011:46189_1:N:0:AGTTCC Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16943:46088_1:N:0:AGTTCC Contig28723 17869 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11415:46269_1:N:0:AGTTCC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14511:46442_1:N:0:AGTTCC Contig211522 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5692:47056_1:N:0:AGTTCC Contig427146 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2238:47421_1:N:0:AGTTCC Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4450:47625_1:N:0:AGTTCC Contig85598 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7367:47606_1:N:0:AGTTCC Contig471366 212 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8701:49550_1:N:0:AGTTCC Contig482041 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5955:50040_1:N:0:AGTTCC Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12075:50046_1:N:0:AGTTCC Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15494:51072_1:N:0:AGTTCC Contig390860 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5326:51745_1:N:0:AGTTCC Contig354820 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14395:52236_1:Y:0:AGTTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18170:52326_1:N:0:AGTTCC Contig234485 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16321:52671_1:N:0:AGTTCC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1429:53463_1:N:0:AGTTCC Contig306797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6828:53523_1:N:0:AGTTCC Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12255:53853_1:N:0:AGTTCC Contig404003 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1825:54205_1:N:0:AGTTCC Contig377430 257 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2864:54133_1:N:0:AGTTCC Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2139:54571_1:N:0:AGTTCC Contig447977 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7947:54588_1:N:0:AGTTCC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8449:55784_1:N:0:AGTTCC Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8610:57210_1:N:0:AGTTCC Contig382561 149 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16655:57919_1:N:0:AGTTCC Contig358108 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5469:58190_1:N:0:AGTTCC Contig687242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10291:58424_1:N:0:AGTTCC Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13716:59033_1:N:0:AGTTCC Contig214717 501 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15209:59330_1:N:0:AGTTCC Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1965:60207_1:N:0:AGTTCC Contig201334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8084:60103_1:N:0:AGTTCC Contig297486 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11149:60930_1:N:0:AGTTCC Contig687180 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5418:61382_1:N:0:AGTTCC Contig165074 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15960:61505_1:N:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9015:62659_1:N:0:AGTTCC Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14250:62919_1:N:0:AGTTCC Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6011:63422_1:N:0:AGTTCC Contig34827 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16310:65287_1:N:0:AGTTCC Contig312918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3939:65622_1:N:0:AGTTCC Contig178534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16061:65888_1:N:0:AGTTCC Contig9424 2288 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13446:66052_1:N:0:AGTTCC Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18289:66501_1:N:0:AGTTCC Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21036:66680_1:N:0:AGTTCC Contig53478 1741 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18503:66952_1:Y:0:CGTTCC Contig687242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16248:67356_1:N:0:AGTTCC Contig618226 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19020:67577_1:N:0:AGTTCC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17682:68270_1:N:0:AGTTCC Contig303313 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2275:69055_1:N:0:AGTTCC Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13615:69203_1:N:0:AGTTCC Contig609847 1725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20194:69269_1:N:0:AGTTCC Contig640081 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17730:70661_1:N:0:AGTTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1625:71700_1:N:0:AGTTCC Contig621317 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5887:71813_1:N:0:AGTTCC Contig294034 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11971:74995_1:N:0:AGTTCC Contig5683 19295 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14495:74832_1:N:0:AGTTCC Contig375324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19079:74999_1:N:0:AGTTCC Contig169623 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3484:75111_1:N:0:AGTTCC Contig156788 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14724:75158_1:N:0:AGTTCC Contig416040 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19965:76127_1:N:0:AGTTCC Contig650299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2496:76280_1:N:0:AGTTCC Contig589226 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4525:77471_1:N:0:AGTTCC Contig439987 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8972:77312_1:N:0:AGTTCC Contig143511 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9916:77788_1:N:0:AGTTCC Contig99487 1494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15099:77755_1:N:0:AGTTCC Contig483955 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8854:78247_1:N:0:AGTTCC Contig570190 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13373:78162_1:N:0:AGTTCC Contig655427 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13133:78700_1:N:0:AGTTCC Contig652172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7741:79796_1:N:0:AGTTCC Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4941:80004_1:N:0:AGTTCC Contig16217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19212:80168_1:N:0:AGTTCC Contig675663 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21110:81614_1:N:0:AGTTCC Contig65088 12315 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14974:82431_1:N:0:AGTTCC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2579:83647_1:N:0:AGTTCC Contig646511 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10902:84120_1:N:0:AGTTCC Contig144702 741 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4421:84353_1:N:0:AGTTCC Contig600045 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1131:84762_1:Y:0:AGTTCC Contig109517 4362 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16750:84885_1:N:0:AGTTCC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8385:85161_1:N:0:AGTTCC Contig616319 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2177:86002_1:N:0:AGTTCC Contig278658 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8133:86404_1:N:0:AGTTCC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6155:87467_1:N:0:AGTTCC Contig280193 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6340:87296_1:N:0:AGTTCC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19025:87414_1:N:0:AGTTCC Contig215639 420 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20565:87922_1:Y:0:AGTTCC Contig340628 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15892:88584_1:N:0:AGTTCC Contig393086 216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12377:89805_1:N:0:AGTTCC Contig594240 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14237:90419_1:N:0:AGTTCC Contig212583 286 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11383:90639_1:N:0:AGTTCC Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13109:91356_1:N:0:AGTTCC Contig298422 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3142:92157_1:N:0:AGTTCC Contig336854 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10715:92080_1:N:0:AGTTCA Contig548790 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5047:93474_1:N:0:AGTTCC Contig33582 1304 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11002:94175_1:N:0:AGTTCC Contig40175 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18083:94001_1:N:0:AGTTCC Contig549601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5210:94491_1:N:0:AGTTCC Contig620077 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17785:94378_1:N:0:AGTTCC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19541:94510_1:N:0:AGTTCC Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17365:95039_1:Y:0:AGTTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7513:96152_1:N:0:AGTTCC Contig151793 413 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13894:96178_1:N:0:AGTTCC Contig522586 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18555:96024_1:N:0:AGTTCC Contig375365 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18676:96723_1:N:0:AGTTCC Contig589513 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10095:97216_1:N:0:AGTTCC Contig552241 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12211:97977_1:N:0:AGTTCC Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17312:98667_1:N:0:AGTTCC Contig130274 1430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4781:98815_1:N:0:AGTTCC Contig174337 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11930:99602_1:N:0:AGTTCC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5508:99926_1:N:0:AGTTCC Contig79195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8476:100303_1:N:0:AGTTCN Contig649897 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15501:2347_1:N:0:AGTTCC Contig256975 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15957:2490_1:N:0:AGTTCC Contig114414 676 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4440:3172_1:Y:0:AGTTCC Contig297179 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12341:3094_1:N:0:AGTTCC Contig574054 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18288:3167_1:N:0:AGTTCC Contig672031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13030:4228_1:N:0:AGTTCC Contig693041 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10963:4398_1:N:0:AGTTCC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14076:4399_1:N:0:AGTTCC Contig637239 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1116:5009_1:N:0:NGTTCC Contig487566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17294:5273_1:N:0:AGTTCC Contig690272 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14577:6709_1:N:0:AGTTCC Contig56731 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19361:6803_1:N:0:AGTTCC Contig35342 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10391:7087_1:N:0:AGTTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15182:8644_1:N:0:AGTTCC Contig604884 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15349:8527_1:N:0:AGTTCC Contig642394 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1129:8907_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17469:8944_1:N:0:AGTTCC Contig49683 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2122:9379_1:N:0:AGTTCC Contig649455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4229:9555_1:N:0:AGTTCC Contig288326 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2953:9920_1:N:0:AATTCC Contig18967 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12323:9944_1:N:0:AGTTCC Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11750:10103_1:N:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13696:10415_1:N:0:AGTTCC Contig670368 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12285:10604_1:N:0:AGTTCC Contig250337 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17574:10695_1:N:0:AGTTCC Contig77895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8969:10968_1:N:0:AGTTCC Contig448972 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6602:11318_1:N:0:AGTTCC Contig49739 5160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6971:11440_1:Y:0:AGTTCC Contig672031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5247:11775_1:N:0:AATTCC Contig34874 6760 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14202:12014_1:N:0:AGTTCC Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2988:12622_1:N:0:AGTTCC Contig625821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3162:12710_1:N:0:AGTTCC Contig268473 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2779:13626_1:N:0:AGTTCC Contig164791 496 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12603:14379_1:N:0:AGTTCC Contig51709 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7765:14533_1:N:0:AGTTCC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14389:14652_1:N:0:AGTTCC Contig127853 2096 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5140:14967_1:N:0:AGTTCC Contig58853 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4740:16109_1:N:0:AGTTCC Contig64114 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12476:16689_1:N:0:AGTTCC Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11277:17569_1:N:0:AGTTCC Contig289659 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17507:18246_1:N:0:AGTTCC Contig658135 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9679:18471_1:N:0:AGTTCC Contig119588 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5710:18549_1:N:0:AGTTCC Contig292231 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10927:19628_1:N:0:AGTTCC Contig248693 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11817:20727_1:N:0:AGTTCC Contig296146 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3646:21746_1:N:0:AGTTCC Contig542798 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12433:21655_1:N:0:AGTTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19554:22059_1:N:0:AGTTCC Contig146036 3670 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6729:22829_1:N:0:AGTTCC Contig85043 15664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9680:23111_1:Y:0:AGTTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6776:23407_1:N:0:AGTTCC Contig574071 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3488:24969_1:N:0:AGTTCC Contig139920 15223 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13265:24821_1:N:0:AGTTCC Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17233:24886_1:N:0:AGTTCC Contig99487 1494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15143:25097_1:N:0:AGTTCC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13758:25553_1:N:0:AGTTCC Contig5544 4227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20690:25833_1:N:0:AGTTCC Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17029:26404_1:N:0:AGTTCC Contig257588 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17875:26473_1:N:0:AGTTCC Contig360958 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19429:27967_1:N:0:AGTTCC Contig203563 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12431:28133_1:N:0:AGTTCC Contig200416 370 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18273:28020_1:N:0:AGTACC Contig328776 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8423:28429_1:N:0:AGTTCC Contig523701 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9231:28395_1:N:0:AGTTCC Contig286090 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4030:28825_1:N:0:AGTTCC Contig368897 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8677:29107_1:N:0:AGTTCC Contig140494 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 677632 (67.76%) aligned 0 times 115967 (11.60%) aligned exactly 1 time 206401 (20.64%) aligned >1 times 32.24% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 676582 (67.66%) aligned 0 times 115530 (11.55%) aligned exactly 1 time 207888 (20.79%) aligned >1 times 32.34% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 623776 (62.38%) aligned 0 times 124945 (12.49%) aligned exactly 1 time 251279 (25.13%) aligned >1 times 37.62% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 624514 (62.45%) aligned 0 times 125089 (12.51%) aligned exactly 1 time 250397 (25.04%) aligned >1 times 37.55% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_14_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_14_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 308475 Mapping efficiency: 30.8% Final Cytosine Methylation Report ================================= Total number of C's analysed: 1909368 Total methylated C's in CpG context: 297129 Total methylated C's in CHG context: 7858 Total methylated C's in CHH context: 86763 Total methylated C's in Unknown context: 54 Total unmethylated C's in CpG context: 50101 Total unmethylated C's in CHG context: 370495 Total unmethylated C's in CHH context: 1097022 Total unmethylated C's in Unknown context: 378 C methylated in CpG context: 85.6% C methylated in CHG context: 2.1% C methylated in CHH context: 7.3% C methylated in Unknown context (CN or CHN): 12.5% Bismark completed in 0d 4h 30m 8s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_15_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_15_s456_trimmed.fq.gz to zr1394_15_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_15_s456_trimmed.fq.gz to zr1394_15_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_15_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_15_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_15_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_15_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1117:2111_1:Y:0:ATGNCA 0 Contig66448_CT_converted 3931 0 31M * 0 0 TAATGGAGTGTAATTTTATTTTTAATTTTGT />> Writing bisulfite mapping results to zr1394_15_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_15_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19664:2112_1:Y:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16728:2526_1:N:0:ATGTCA Contig33217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18661:2630_1:N:0:ATGTCA Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12196:3519_1:N:0:ATGTCA Contig211457 874 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21320:3835_1:N:0:ATGTCA Contig53168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7531:5309_1:N:0:ATGTCA Contig306375 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15179:6031_1:N:0:ATGTCA Contig318895 264 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13180:6326_1:N:0:ATGTCA Contig162841 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8993:8759_1:N:0:ATGTCA Contig409460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5451:9533_1:N:0:ATGTCA Contig355919 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5421:9994_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16054:9980_1:N:0:ATGTCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13689:10780_1:N:0:ATGTCA Contig170690 1021 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10427:11770_1:N:0:ATGTCA Contig77895 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12583:11911_1:N:0:ATGTCA Contig360647 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1984:12295_1:N:0:ATGTCA Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17565:12254_1:N:0:ATGTCA Contig521134 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15730:12975_1:N:0:ATGTCA Contig164433 784 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16705:13647_1:N:0:ATGTCA Contig15508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5137:14311_1:N:0:ATGTCA Contig666842 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16274:14582_1:N:0:ATGTCA Contig86930 13319 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19567:14584_1:N:0:ATGTCA Contig520867 149 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10752:14752_1:N:0:ATGTCA Contig230532 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2203:15119_1:N:0:ATGTCA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13913:15334_1:N:0:ATGTCA Contig63056 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8258:16784_1:N:0:ATGTCA Contig139571 1743 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9326:17375_1:N:0:ATGTCA Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10108:18075_1:N:0:ATGTCA Contig663477 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9461:18354_1:N:0:GTGTCA Contig628196 8518 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14085:18459_1:N:0:ATGTCA Contig5906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5024:19066_1:N:0:ATGTCA Contig8907 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5553:19038_1:N:0:ATGTCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2674:19510_1:N:0:ATGTCA Contig609731 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10324:19828_1:N:0:ATGTCA Contig201972 23671 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11678:19826_1:N:0:ATATCA Contig343610 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5251:20463_1:N:0:ATGTCA Contig79686 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16696:20421_1:N:0:ATGTCA Contig131673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9435:22379_1:N:0:ATGTCA Contig16985 787 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11742:22672_1:N:0:ATGTCA Contig280405 308 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19324:22703_1:N:0:ATGTCA Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8126:22814_1:N:0:ATGTCA Contig651649 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10885:24563_1:N:0:ATGTCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20556:26018_1:N:0:ATGTCA Contig43880 6706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16170:26497_1:N:0:ATGTCA Contig345103 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11859:26694_1:N:0:ATGTCA Contig442529 6540 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10649:26848_1:N:0:ATGTCA Contig347923 470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12293:27035_1:N:0:ATGTCA Contig236978 464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17448:27883_1:N:0:ATGTCA Contig260644 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12636:28814_1:N:0:ATGTCA Contig539289 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13166:28824_1:N:0:ATGTCA Contig7715 7901 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18332:29313_1:N:0:ATGTCA Contig143143 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1547:29519_1:N:0:ATGTCA Contig92446 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10618:29996_1:N:0:ATGTCA Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13888:31851_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10652:33778_1:N:0:ATGTCA Contig216978 970 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13941:34073_1:N:0:ATGTCA Contig4739 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17176:34102_1:N:0:ATGTCA Contig423159 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3712:34487_1:N:0:ATGTCA Contig349150 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3865:34696_1:N:0:ATGTCA Contig381543 181 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16645:34981_1:N:0:ATGTCA Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7709:35727_1:Y:0:ATGTCA Contig179593 428 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6889:35944_1:N:0:ATGTCA Contig223261 1603 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20126:36432_1:N:0:ATGTCA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10636:37661_1:N:0:ATGTCT Contig596096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19699:40754_1:N:0:ATGTCA Contig371993 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12337:41263_1:N:0:ATGTCA Contig659071 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20626:41318_1:N:0:ATGTCA Contig69363 2721 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2677:42216_1:Y:0:ATGTCA Contig475429 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14026:42785_1:N:0:ATGTCA Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5266:43151_1:N:0:ATGTCA Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11859:43247_1:N:0:ATGTCA Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17932:43210_1:N:0:ATGTCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2064:44140_1:N:0:ATGTCA Contig84861 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19435:44131_1:Y:0:ATGTCA Contig266248 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10529:44393_1:N:0:ATGTCA Contig163392 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7505:44912_1:N:0:ATGTCA Contig97886 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10705:45188_1:N:0:ATGTCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12038:45040_1:N:0:ATGTCA Contig75611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8811:45947_1:Y:0:ATGTCA Contig33770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7300:46802_1:Y:0:ATGTCA Contig230354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13960:46777_1:N:0:ATGTCA Contig108965 8595 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4712:47799_1:N:0:ATGTCA Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18194:48361_1:N:0:TTGTCA Contig353860 332 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1809:49390_1:N:0:ATGTCA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10428:49658_1:N:0:ATGTCA Contig260781 233 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15779:50913_1:N:0:ATGTCA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2212:51438_1:N:0:ATGTCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19859:51454_1:Y:0:ATGTCA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12504:51595_1:N:0:ATGTCA Contig651649 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17855:53910_1:N:0:ATGTCA Contig316769 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17309:54043_1:N:0:ATGTCA Contig176386 464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10777:54872_1:N:0:ATGTCA Contig159046 408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19174:54775_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15069:55523_1:Y:0:ATGTCA Contig408476 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7488:55865_1:N:0:ATGTCA Contig57550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4507:57125_1:N:0:ATGTCA Contig451195 471 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19148:57540_1:N:0:ATGTCA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4602:58722_1:N:0:ATGTCA Contig174337 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4171:59194_1:N:0:ATGTCA Contig564570 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1454:59667_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18318:59523_1:N:0:ATGTCA Contig22119 4007 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13655:59994_1:N:0:ATGTCA Contig633833 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8815:60770_1:N:0:ATGTCA Contig79341 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15733:61006_1:N:0:ATGTCA Contig645560 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18185:61390_1:N:0:ATGTCA Contig58165 2667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4665:61791_1:N:0:ATGTCA Contig30743 16230 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6544:62910_1:N:0:ATGTCA Contig64153 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1594:63314_1:N:0:ATGTCA Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1415:64237_1:N:0:ATGTCA Contig649008 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20359:64496_1:N:0:ATGTCA Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4257:65658_1:N:0:ATGTCA Contig589513 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4296:67449_1:N:0:ATGTCA Contig272230 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10594:68493_1:N:0:ATGTCA Contig292091 9069 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5263:69151_1:N:0:ATGTCA Contig531618 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12972:69970_1:N:0:ATGTCA Contig64114 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18537:70838_1:N:0:ATGTCA Contig257339 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12870:71035_1:N:0:ATGTCA Contig102390 1919 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16157:72350_1:N:0:ATGTCA Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17943:72711_1:N:0:ATGTCA Contig131130 904 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3343:74346_1:N:0:ATGTCA Contig687180 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11487:74392_1:N:0:ATGTCA Contig474502 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4619:75308_1:N:0:ATGTCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4799:75326_1:N:0:ATGTCA Contig10173 505 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6220:75812_1:N:0:ATGTCA Contig174826 582 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10220:75783_1:N:0:ATGTCA Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1581:77117_1:N:0:ATGTCA Contig79341 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3941:77424_1:N:0:ATGTCA Contig195775 376 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16298:77410_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13853:77831_1:N:0:ATGTCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20516:79192_1:N:0:ATGTCA Contig2131 20210 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10974:80232_1:N:0:ATGTCA Contig111917 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17590:80040_1:N:0:ATGTCA Contig663678 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1400:80500_1:N:0:ATGTCA Contig314603 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2902:80251_1:N:0:ATGTCA Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6935:80879_1:N:0:ATGTCA Contig21480 11698 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20663:82121_1:Y:0:ATGTCA Contig503279 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3364:82448_1:Y:0:ATGTCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14904:82476_1:N:0:ATGTCA Contig130575 632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11907:82599_1:N:0:ATGTCA Contig51176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4385:85593_1:N:0:ATGTCA Contig371751 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16926:85848_1:Y:0:ATGTCA Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16013:86341_1:N:0:ATGTCA Contig140655 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2866:88561_1:N:0:ATGTCA Contig95791 4571 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7592:89639_1:N:0:ATGTCA Contig342888 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3677:90931_1:N:0:ATGTCA Contig340106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15262:91265_1:N:0:ATGTCA Contig64125 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7198:92141_1:N:0:ATGTCA Contig417281 327 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10664:92549_1:N:0:ATGTCA Contig518555 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4638:93701_1:N:0:ATGTCA Contig249523 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5661:94042_1:N:0:ATGTCA Contig607102 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8906:94503_1:N:0:ATGTCA Contig522741 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19194:95834_1:Y:0:ATGTCA Contig239524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3862:96033_1:N:0:ATGTCA Contig515784 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20213:96531_1:N:0:ATGTCA Contig328672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4137:96953_1:N:0:ATGTCA Contig19150 10194 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9663:97739_1:N:0:ATGTCA Contig617143 412 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6279:97985_1:N:0:ATGTCA Contig50279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7298:98067_1:Y:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14939:98082_1:N:0:ATGTCA Contig397895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11096:98351_1:N:0:ATGTCA Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8067:98607_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14858:99340_1:N:0:ATGTCA Contig172359 711 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7796:99709_1:N:0:ATGTCA Contig475217 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3881:100001_1:N:0:ATGTCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19553:2591_1:N:0:ATGTCA Contig20438 630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3217:2793_1:N:0:ATGTCA Contig639220 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20434:4181_1:N:0:ATGTCA Contig344368 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18187:4993_1:N:0:ATGTCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15083:5294_1:N:0:ATGTCA Contig298690 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19104:5340_1:Y:0:ATGTCA Contig330405 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16950:5942_1:N:0:ATGTCA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16902:6493_1:N:0:ATGTCA Contig393504 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20365:6257_1:N:0:ATGTCA Contig357296 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13970:6863_1:N:0:ATGTCA Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17666:7184_1:N:0:ATGTCA Contig376296 328 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10020:8345_1:N:0:ATGTCA Contig423604 128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3996:8864_1:N:0:ATGTCA Contig357296 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15304:8759_1:N:0:ATGTCA Contig292091 9069 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10145:10655_1:N:0:ATGTCA Contig21480 11698 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15060:10550_1:Y:0:ATGTCA Contig66060 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4886:11126_1:N:0:ATGTCA Contig9115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9838:12184_1:N:0:ATGTCA Contig143249 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12371:12408_1:N:0:ATGTCA Contig3611 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4081:12779_1:N:0:ATGTCA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21001:13600_1:Y:0:GTGTCA Contig388873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9011:16142_1:N:0:ATGTCA Contig436831 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10971:16945_1:N:0:ATGTCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17460:17909_1:N:0:ATGTCA Contig116318 1707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5025:18249_1:N:0:ATGTCA Contig228280 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2385:18747_1:N:0:ATGTCA Contig106451 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17597:19406_1:N:0:ATGTCA Contig609558 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11667:19672_1:N:0:ATGTCA Contig342888 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20793:19562_1:Y:0:ATGTCA Contig135946 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12153:20016_1:N:0:ATGTCA Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5132:20328_1:N:0:ATGTCA Contig52426 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2109:20835_1:N:0:ATGTCA Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20112:21273_1:N:0:ATGTCA Contig358544 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19325:21564_1:Y:0:ATGTCA Contig7706 4631 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13280:21984_1:N:0:ATGTCA Contig135252 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3640:22539_1:N:0:ATGTCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8599:23230_1:N:0:ATGTCA Contig128909 3374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4440:24642_1:N:0:ATGTCA Contig53769 6824 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16007:25233_1:N:0:ATGTCA Contig647037 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18598:26932_1:N:0:ATGTCA Contig340409 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20402:27732_1:N:0:ATGTCA Contig174212 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16807:27755_1:N:0:ATGTCA Contig285613 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1490:28226_1:Y:0:ATGTCA Contig451267 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13785:28094_1:N:0:ATGTCA Contig153195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4180:28386_1:N:0:ATGTCA Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8172:28628_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14222:29450_1:N:0:ATGTCA Contig4739 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1675:29555_1:N:0:ATGTCA Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12002:29851_1:N:0:ATGTCA Contig65088 12315 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13427:29894_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18275:30010_1:N:0:ATGTCA Contig153689 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13223:30643_1:N:0:ATGTCA Contig32331 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12890:32260_1:N:0:ATGTCA Contig274373 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16758:33970_1:N:0:ATGTCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9862:34805_1:N:0:ATGTCA Contig185923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19417:34989_1:N:0:ATGTCA Contig103236 2035 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14644:35858_1:N:0:ATGTCA Contig36867 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5928:38579_1:N:0:ATGTCA Contig561626 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8564:38705_1:N:0:ATGTCA Contig192366 419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13437:39083_1:N:0:ATGTCA Contig418684 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17267:39579_1:N:0:ATGTCA Contig111429 2107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11630:39813_1:Y:0:ATGTCA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19523:41629_1:N:0:ATGTCA Contig339403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20399:41900_1:N:0:ATGTCA Contig480629 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1125:43008_1:N:0:ATGTCA Contig148295 1560 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9837:44510_1:N:0:ATGTCA Contig85043 15664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18238:45522_1:N:0:ATGTCA Contig485509 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11695:46869_1:N:0:ATGTCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2084:47485_1:N:0:ATGTCA Contig403379 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7632:47426_1:N:0:ATGTCA Contig422052 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7875:47855_1:N:0:ATGTCA Contig292231 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18937:47923_1:N:0:ATGTCA Contig620494 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7947:48412_1:N:0:ATGTCA Contig671072 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8494:50292_1:N:0:ATGTCA Contig615096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15209:50466_1:N:0:ATGTCA Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3477:50512_1:N:0:ATGTCA Contig6878 3119 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3885:51414_1:N:0:ATGTCA Contig62804 18778 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15026:52012_1:N:0:ATGTCA Contig602782 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14265:52899_1:Y:0:ATGTCC Contig40273 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2160:53095_1:N:0:ATGTCA Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6062:53300_1:N:0:ATGTCA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11895:53636_1:N:0:ATGTCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10786:54054_1:N:0:ATGTCA Contig76372 4479 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16565:54165_1:N:0:ATGTCA Contig298206 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14719:54574_1:N:0:ATGTCA Contig131834 4700 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13604:55476_1:Y:0:ATGTCT Contig479995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15747:56017_1:Y:0:ATGTCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6498:56950_1:N:0:ATGTCA Contig76281 3127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4597:57601_1:N:0:ATGTCA Contig193410 519 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18183:58838_1:N:0:ATGTCA Contig116318 1708 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3387:59024_1:Y:0:ATGTCA Contig50744 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4232:60215_1:N:0:ATGTCA Contig592209 197 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10127:60151_1:N:0:ATGTCA Contig2061 12725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10042:60497_1:N:0:ATGTCA Contig341961 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8791:60811_1:N:0:ATGTCA Contig329909 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15276:61862_1:N:0:ATGTCA Contig495294 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4688:62245_1:N:0:ATGTCA Contig434401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15129:62463_1:N:0:ATGTCA Contig404759 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18156:62697_1:N:0:ATGTCA Contig5598 5128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1526:63614_1:N:0:ATGTCA Contig393086 216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18289:63634_1:N:0:ATGTCA Contig676640 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9507:64346_1:N:0:ATGTCA Contig312699 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14228:64729_1:N:0:ATGTCA Contig161891 494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14357:64568_1:Y:0:ATGTCA Contig633921 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16565:64883_1:N:0:ATGTCA Contig343177 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5261:65439_1:N:0:ATGTCA Contig427019 4865 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11134:65489_1:N:0:ATGTCA Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5094:66625_1:Y:0:ATGTCA Contig480629 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20665:67391_1:N:0:ATGTCA Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13323:68036_1:N:0:ATGTCA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17335:68119_1:N:0:ATGTCA Contig9115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14591:68368_1:N:0:ATGTCA Contig620062 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6537:68994_1:N:0:ATGTCA Contig96078 1731 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7405:69155_1:N:0:ATGTCA Contig61918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9984:69134_1:N:0:ATGTCA Contig391617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2696:72350_1:N:0:ATGTCA Contig53330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16849:73311_1:N:0:ATGTCA Contig364939 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3837:73771_1:N:0:ATGTCA Contig312918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9805:74085_1:N:0:ATGTCA Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14885:74237_1:N:0:ATGTCA Contig592758 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5533:74413_1:N:0:ATGTCA Contig143006 787 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15194:74296_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9897:74564_1:N:0:ATGTCA Contig96316 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13688:74533_1:N:0:ATGTCA Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2858:75004_1:N:0:ATGTCA Contig279822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16036:75157_1:Y:0:ATGTCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7634:77273_1:N:0:ATGTCA Contig426118 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18203:77738_1:N:0:ATGTCA Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16021:77958_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13078:78677_1:N:0:ATGTCA Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17162:78590_1:N:0:ATGTCA Contig396049 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19770:78911_1:N:0:ATGTCA Contig290008 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21063:78898_1:N:0:ATGTCA Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20961:79816_1:N:0:ATGTCA Contig12880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7097:80083_1:N:0:ATGTCA Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5038:80276_1:N:0:ATGTCA Contig496352 375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5364:80385_1:N:0:ATGTCA Contig24806 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11166:80593_1:N:0:ATGTCA Contig382437 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1180:81227_1:N:0:ATGTCA Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1319:81251_1:N:0:ATGTCA Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19376:82572_1:N:0:ATGTCA Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14331:83632_1:N:0:ATGTCA Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12187:84037_1:N:0:ATGTCA Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17436:84077_1:N:0:ATGTCA Contig77186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14098:85390_1:N:0:ATGTCA Contig564931 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5613:87274_1:N:0:ATGTCA Contig138423 7687 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8664:87329_1:N:0:ATGTCA Contig634792 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7040:87621_1:N:0:ATGTCA Contig333135 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1786:87958_1:N:0:ATGTCA Contig73089 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12360:87804_1:N:0:ATGTCA Contig28864 27255 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7346:88460_1:N:0:ATGTCA Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13672:88932_1:N:0:ATGTCA Contig228657 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18932:89273_1:N:0:ATGTCA Contig269662 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20105:89275_1:N:0:ATGTCA Contig310256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6643:90611_1:N:0:ATGTCA Contig61494 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14448:91409_1:N:0:ATGTCA Contig20751 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6064:91889_1:N:0:ATGTCA Contig505908 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16424:92125_1:N:0:ATGTCA Contig549480 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6796:93025_1:N:0:ATGTCA Contig402212 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3230:95105_1:N:0:ATGTCA Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9634:95156_1:N:0:ATGTCA Contig689481 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7487:95430_1:N:0:ATGTCA Contig519196 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6858:95717_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5276:95796_1:N:0:ATGTCA Contig184321 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6051:96455_1:N:0:ATGTCA Contig50451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8761:96418_1:N:0:ATGTCA Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1944:96714_1:N:0:ATGTCA Contig235004 648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21207:97209_1:Y:0:ATGTCA Contig435306 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17867:97275_1:N:0:ATGTCA Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13900:98365_1:N:0:ATGTCA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3995:99323_1:N:0:ATGTCA Contig132714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6826:2321_1:N:0:ATGTCA Contig447940 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13592:2442_1:N:0:ATGTCA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9575:2763_1:N:0:ATGTCA Contig68560 2696 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19346:3090_1:N:0:ATGTCA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14483:3298_1:N:0:ATGTCA Contig159318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2243:3664_1:N:0:ATGTCA Contig24087 5919 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21135:4035_1:N:0:ATGTCA Contig623404 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14318:4896_1:N:0:ATGTCA Contig672106 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4328:5090_1:N:0:ATGTCA Contig73204 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3418:5380_1:N:0:ATGTCA Contig647074 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19269:8349_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13015:9607_1:N:0:ATGTCA Contig441179 243 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5782:9760_1:N:0:ATGTCA Contig597344 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9228:11194_1:N:0:GTGTCA Contig660154 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2630:11334_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4047:11487_1:N:0:ATGTCA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17194:11804_1:N:0:ATGTCA Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20466:12150_1:N:0:ATGTCA Contig271503 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2114:12559_1:N:0:ATGTCA Contig457142 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18198:14438_1:N:0:ATGTCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20306:15063_1:N:0:ATGTCA Contig37938 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6481:15587_1:N:0:ATGTCA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17945:15630_1:Y:0:ATGTCA Contig370539 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5412:18114_1:N:0:ATGTCA Contig501465 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12133:18571_1:N:0:ATGTCA Contig203491 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13007:19669_1:N:0:ATGTCA Contig505463 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8894:20549_1:N:0:ATGTCA Contig536623 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12238:21097_1:N:0:ATGTCA Contig483174 1107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19124:21103_1:N:0:ATGTCA Contig68900 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1349:22831_1:N:0:ATGTCA Contig358544 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8514:23073_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4537:23735_1:N:0:ATGTAA Contig6187 4302 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8745:23776_1:N:0:ATGTCA Contig184503 1141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9327:23955_1:N:0:ATGTAA Contig44935 2059 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17694:23834_1:N:0:ATGTCA Contig295456 215 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5845:25250_1:N:0:ATGTCA Contig427019 4865 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7703:25169_1:N:0:ATGTCA Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14391:25364_1:N:0:ATGGCA Contig619524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12761:25919_1:N:0:ATGTCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20185:26973_1:Y:0:ATGTCA Contig143249 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7086:27160_1:N:0:ATGTCA Contig32435 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19392:27994_1:N:0:ATGTCA Contig13974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5657:28073_1:N:0:ATGTCA Contig154364 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15219:28605_1:N:0:ATGTCA Contig558169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4609:30706_1:N:0:ATGTCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18531:30783_1:N:0:ATGTCA Contig305320 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13609:31194_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17612:31155_1:N:0:ATGTCA Contig397090 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5476:31896_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12556:32471_1:N:0:ATGTTA Contig544135 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13661:32825_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14837:32896_1:N:0:ATGTCA Contig62815 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4212:33198_1:N:0:ATGTCA Contig320922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17724:33547_1:N:0:ATGTCA Contig150257 2534 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15101:33789_1:N:0:ATGTCA Contig16858 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19019:34328_1:N:0:ATGTCA Contig55363 6309 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13853:35199_1:N:0:ATGTCA Contig598681 116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20927:35086_1:N:0:ATGTCA Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5113:35871_1:N:0:ATGTCA Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12565:36208_1:N:0:ATGTCA Contig100776 5581 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17197:36082_1:N:0:ATGTCA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8046:36320_1:N:0:ATGTCA Contig240328 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18418:36538_1:N:0:ATGTCA Contig66572 22675 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15301:36911_1:N:0:ATGTCA Contig90138 12435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11890:37103_1:N:0:ATGTCA Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13539:37346_1:N:0:ATGTCA Contig360983 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8572:37883_1:N:0:ATGTCA Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11745:38204_1:Y:0:ATGTCA Contig115958 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11657:38697_1:N:0:ATGTCA Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8643:39448_1:Y:0:ATGTCA Contig203491 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17889:39291_1:N:0:ATGTCA Contig458752 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8003:39857_1:N:0:ATGTCA Contig468151 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11654:40654_1:N:0:ATGTCA Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14269:40623_1:N:0:ATGTCA Contig598681 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14445:43099_1:N:0:ATGCCA Contig660154 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17339:43293_1:N:0:ATGTCA Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8019:44633_1:N:0:ATGTCA Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3054:46933_1:Y:0:ATGTCA Contig577900 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11110:47561_1:N:0:ATGTCA Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15412:48597_1:N:0:ATGTCA Contig353860 332 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16743:48560_1:N:0:ATGTCA Contig152341 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8587:49647_1:N:0:ATGTCA Contig471740 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11306:50221_1:N:0:ATGTCA Contig392330 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3584:50323_1:N:0:ATGTCA Contig12828 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6435:51029_1:N:0:ATGTCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10019:52157_1:N:0:ATGTCA Contig372926 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6762:53351_1:N:0:ATGTCA Contig264447 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4463:53876_1:N:0:ATGTCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15051:54903_1:N:0:ATGTCA Contig33681 15405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17820:54802_1:N:0:ATGTCA Contig609731 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3244:55222_1:N:0:ATGTCA Contig272596 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10119:55860_1:N:0:ATGTCA Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15002:56175_1:Y:0:GTGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4090:56439_1:N:0:ATGTCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11957:56401_1:N:0:ATATCA Contig44505 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20696:56453_1:Y:0:ATGTCA Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19176:56558_1:N:0:ATGTCA Contig474502 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9798:57027_1:N:0:ATGTCA Contig338786 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13893:57473_1:N:0:ATGTCA Contig441797 164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17774:57897_1:N:0:ATGTCA Contig50825 6660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4565:58077_1:N:0:ATGTCA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3867:58494_1:N:0:ATGTCA Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13469:58554_1:N:0:ATGTCA Contig484507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8961:58990_1:N:0:ATGTCA Contig55740 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12509:59077_1:N:0:ATGTCA Contig8994 616 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11205:59280_1:N:0:ATGTCA Contig76265 2306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14037:59905_1:Y:0:ATGTCA Contig599717 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17614:63164_1:N:0:ATGTCA Contig231743 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9832:63344_1:N:0:ATGTCA Contig35496 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1570:66512_1:N:0:ATGTCA Contig272585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16306:66722_1:Y:0:ATGTCA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18591:66689_1:N:0:ATGTCA Contig445420 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13939:66751_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5711:67664_1:N:0:ATGTCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13431:67528_1:N:0:ATGTCA Contig112557 867 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17987:67934_1:N:0:ATGTCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18845:67933_1:N:0:ATGTCA Contig31499 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7205:70291_1:N:0:ATGTCA Contig438914 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8348:70273_1:N:0:ATGTCA Contig440550 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10928:70717_1:N:0:ATGTCA Contig361949 184 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19971:71616_1:N:0:ATGTCA Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9202:72041_1:N:0:ATGTCA Contig405172 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19791:72271_1:N:0:ATGTCA Contig389666 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4722:72597_1:N:0:ATGTCA Contig49419 2121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2084:73267_1:N:0:ATGTCA Contig310958 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20000:73382_1:Y:0:ATGTCA Contig95662 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10488:73889_1:N:0:ATGTCA Contig73924 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17109:73885_1:N:0:ATGTCA Contig179167 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3611:74926_1:N:0:ATGTCA Contig601866 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8410:77154_1:N:0:ATGTCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11266:77198_1:N:0:ATGTCA Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8225:77831_1:N:0:ATGTCA Contig170300 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11209:79072_1:N:0:ATGTCA Contig248779 999 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3749:79277_1:N:0:ATGTCA Contig262494 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18739:81431_1:N:0:ATGTCA Contig453653 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17858:81709_1:N:0:ATGTCG Contig57477 2920 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14941:81807_1:N:0:ATGTCA Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9573:84153_1:N:0:ATGTCA Contig31499 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15967:84257_1:N:0:ATGTCA Contig610450 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5091:84710_1:N:0:ATGTCA Contig367599 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19725:85148_1:N:0:ATGTCA Contig264577 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14684:86161_1:N:0:ATGTCA Contig169638 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20797:87171_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6773:87457_1:N:0:ATGTCA Contig551922 2815 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19175:87797_1:N:0:ATGTCA Contig116318 1708 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6296:89085_1:Y:0:ATGTCA Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17626:89311_1:N:0:ATGTCA Contig69591 6009 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20640:92075_1:N:0:ATGTCA Contig247376 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6791:93748_1:N:0:ATGTCA Contig463327 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16844:95241_1:N:0:ATGTCA Contig54452 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4239:96201_1:N:0:ATGTCA Contig161111 1306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6920:96748_1:N:0:ATGTCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12205:96627_1:N:0:ATGTCA Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15918:97164_1:N:0:ATGTCA Contig181318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14458:97692_1:N:0:TTGTCA Contig106189 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6638:98081_1:N:0:ATGTCA Contig685443 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12980:99182_1:N:0:ATGTCA Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1342:99490_1:N:0:ATGTCA Contig634687 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18705:2397_1:N:0:ATGTCA Contig536501 426 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19488:2558_1:N:0:ATGTCA Contig68690 3424 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12802:4148_1:N:0:ATGTCA Contig414714 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6843:4381_1:N:0:ATGTCA Contig683563 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7835:4660_1:N:0:ATGTCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9632:4835_1:N:0:ATGTCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4624:5112_1:N:0:ATGTCA Contig499198 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19323:5187_1:N:0:ATGTCA Contig34065 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1297:7973_1:N:0:ATGTCC Contig670892 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11026:8096_1:N:0:ATGTCA Contig18616 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14076:8235_1:N:0:ATGTCA Contig286136 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11222:8569_1:N:0:ATGTCA Contig223873 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18616:8875_1:Y:0:ATGTCA Contig183770 844 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3200:9127_1:N:0:ATGTCA Contig651442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18095:9424_1:N:0:ATGTCA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12331:11670_1:N:0:ATGTCA Contig167877 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17794:11873_1:N:0:CTGTCA Contig7719 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8756:12643_1:N:0:ATGTCA Contig644770 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3817:12789_1:N:0:ATGTCA Contig190175 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12112:13368_1:N:0:ATGTCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18263:13866_1:N:0:ATGTCA Contig211 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2920:14772_1:N:0:ATGTCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4909:14971_1:N:0:ATGTCA Contig164256 457 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11064:15889_1:N:0:ATGTCA Contig509745 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10657:16205_1:N:0:ATGTCA Contig687180 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5340:16542_1:N:0:ATGTCA Contig263414 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4788:16984_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9271:17055_1:N:0:ATGTCA Contig149736 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8502:17880_1:N:0:ATGTCA Contig131673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19556:17842_1:N:0:ATGTCA Contig45483 25334 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10730:19028_1:N:0:ATGTCA Contig256106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13975:19309_1:N:0:ATGTCA Contig328672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17644:19887_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9594:20327_1:N:0:ATGTCA Contig362616 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1824:20759_1:N:0:ATGTCA Contig389575 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2640:21312_1:N:0:ATGTCA Contig116318 1707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13268:21667_1:N:0:ATGTCC Contig568135 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13941:22619_1:Y:0:ATGTCA Contig598065 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1881:22962_1:N:0:ATGTCA Contig445879 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5396:23356_1:N:0:ATGTCA Contig112091 3941 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20081:24849_1:N:0:ATGTCA Contig351560 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11747:25323_1:N:0:ATGTCA Contig342116 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5107:25741_1:Y:0:GTGTCA Contig295920 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13091:26068_1:N:0:ATGTCA Contig455003 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7324:26947_1:N:0:ATGTCA Contig142 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1884:27480_1:N:0:ATGTCA Contig341651 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7601:27361_1:N:0:ATGTCA Contig106528 880 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7845:27735_1:N:0:ATGTCA Contig472532 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2155:29211_1:Y:0:ATGTCA Contig456049 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2249:30606_1:N:0:ATGTCA Contig590598 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7491:30740_1:N:0:ATGTCA Contig567958 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3511:31512_1:N:0:ATGTCA Contig386160 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6784:31938_1:N:0:ATGTCA Contig692978 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20318:32183_1:N:0:ATGTCA Contig587871 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10277:33361_1:N:0:ATGTCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13575:33268_1:N:0:ATGTCA Contig556230 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8178:33636_1:Y:0:ATGTCA Contig37980 52323 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10422:33593_1:N:0:ATGTCA Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18244:36618_1:N:0:ATGTCA Contig85043 15664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9185:37021_1:N:0:ATGTCA Contig105116 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19165:37591_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19445:39328_1:N:0:ATGTCA Contig434245 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17007:40184_1:N:0:ATGTCA Contig161696 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5620:41367_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18867:42793_1:Y:0:ATGTCA Contig92721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9295:43123_1:N:0:ATGTCA Contig87567 32744 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14447:43919_1:Y:0:ATGTCA Contig159379 8238 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17448:44492_1:Y:0:ATGTCA Contig298422 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16300:44902_1:N:0:ATGTCA Contig179593 429 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10458:45595_1:N:0:ATGTCA Contig497257 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2084:45963_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11839:45858_1:N:0:ATGTCA Contig18716 78246 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15030:46089_1:N:0:ATGTCA Contig477987 318 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6478:46420_1:N:0:ATGTCA Contig680496 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13088:48293_1:N:0:ATGTCA Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13637:48585_1:N:0:ATGTCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2550:50609_1:N:0:ATGTCA Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6686:50744_1:N:0:ATGTCA Contig201721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7354:50697_1:N:0:ATGTCA Contig63951 4544 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13504:50877_1:N:0:ATGTCA Contig358544 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15167:51670_1:N:0:ATGTCA Contig277177 408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5238:51832_1:N:0:ATGTCA Contig227218 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14786:52678_1:N:0:ATGTCA Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12771:52990_1:N:0:ATGTCA Contig645560 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17562:52761_1:N:0:ATGTCA Contig606358 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9769:53820_1:N:0:ATGTCA Contig174180 2371 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11701:55036_1:N:0:ATGTCA Contig133167 2248 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18231:55289_1:N:0:ATGTCA Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6472:55827_1:N:0:ATGTCA Contig216978 969 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3732:58244_1:N:0:ATGTCA Contig314016 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8918:58313_1:Y:0:ATGTCA Contig21161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11691:58295_1:N:0:ATGTCA Contig644257 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20946:58690_1:Y:0:ATGTCC Contig684768 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15788:59927_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15951:60536_1:N:0:ATGTCA Contig52112 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18336:61173_1:N:0:ATGTCA Contig51135 12183 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19740:61157_1:N:0:GTGTCA Contig195647 2126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17829:61272_1:N:0:ATGTCA Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14103:61715_1:N:0:ATGTCA Contig147849 1043 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3375:62111_1:N:0:ATGTCA Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5498:62055_1:Y:0:ATGTCA Contig475367 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1120:62604_1:N:0:ATGTCA Contig312964 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11347:62608_1:N:0:ATGTCA Contig147655 2711 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13562:62774_1:N:0:ATGTCA Contig410481 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13307:63700_1:N:0:ATGTCA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10348:63766_1:N:0:ATGTCA Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16628:63935_1:N:0:ATGTCA Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5617:64005_1:N:0:ATGTCA Contig212500 296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14462:64282_1:N:0:ATGTCA Contig474508 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1212:65385_1:N:0:ATGTCA Contig184573 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15925:66936_1:Y:0:ATGTCA Contig10599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5324:67051_1:N:0:GTGTCA Contig145428 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12385:68188_1:N:0:ATGTCA Contig50993 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4722:69161_1:N:0:ATGTCA Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16571:69268_1:N:0:ATGTCA Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11170:71224_1:N:0:ATGTCA Contig352230 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4198:72070_1:N:0:ATGTCA Contig170300 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4164:72131_1:N:0:ATGTCA Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1895:72301_1:N:0:ATGTCA Contig525996 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9370:73210_1:N:0:ATGTCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9841:73407_1:N:0:ATGTCA Contig393812 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2460:74385_1:N:0:ATGTCA Contig496352 374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8003:77446_1:N:0:ATGTCA Contig52872 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8698:79425_1:N:0:ATGTCA Contig393402 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14868:79519_1:N:0:ATGTCA Contig513025 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12415:81322_1:N:0:ATGTCA Contig329075 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1457:82588_1:N:0:ATGTCA Contig613336 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4992:83321_1:N:0:ATGTCA Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19207:84386_1:N:0:ATGTCA Contig663678 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18406:84508_1:N:0:ATGTCA Contig541564 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5792:84820_1:N:0:ATGTCA Contig3337 17932 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14508:84883_1:N:0:ATGTCA Contig234047 155 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12793:85663_1:N:0:ATGTCA Contig23581 10005 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18500:85539_1:N:0:ATGTCA Contig391578 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17993:86709_1:N:0:ATGTCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11420:88123_1:N:0:ATGTCA Contig40531 13666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21128:88842_1:N:0:ATGTCA Contig331680 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1681:89001_1:Y:0:ATGTCA Contig360540 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3608:89224_1:N:0:ATGTCA Contig613909 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21239:90463_1:N:0:ATGTCA Contig469095 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8837:91529_1:N:0:ATGTCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12200:93386_1:N:0:ATGTCA Contig94182 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20244:93855_1:N:0:ATGTCA Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6742:94343_1:N:0:ATGTCA Contig512329 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15352:94424_1:N:0:ATGTCA Contig223044 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8114:94565_1:N:0:ATGTCA Contig406646 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4380:94975_1:N:0:ATGTCA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16337:94763_1:N:0:ATGTCA Contig451267 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19002:95939_1:N:0:ATGTCA Contig61033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20372:97521_1:N:0:ATGTCA Contig91220 7579 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2499:98181_1:Y:0:ATGTCA Contig428474 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17042:98020_1:N:0:ATGTCA Contig360958 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6637:98575_1:N:0:ATGTCA Contig143830 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19947:98911_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10696:99489_1:N:0:ATGTCA Contig681209 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16272:2445_1:N:0:ATGTCA Contig94037 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16685:2616_1:N:0:ATGTCA Contig358544 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2882:2782_1:N:0:ATGTCA Contig441455 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17968:2901_1:N:0:ATGTCA Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10001:3124_1:N:0:ATGTCA Contig77186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12414:3651_1:N:0:ATGTCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4202:4539_1:N:0:ATTTCA Contig35645 988 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20090:4668_1:N:0:ATGTCA Contig199542 697 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2554:4924_1:N:0:ATGTCA Contig633071 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2173:5011_1:N:0:ATGTCA Contig290822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8809:5246_1:N:0:ATGTCA Contig695568 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13828:5208_1:N:0:ATGTCA Contig155739 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19807:5292_1:N:0:ATGTCA Contig523644 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18239:6784_1:N:0:ATGTCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19895:6925_1:N:0:ATGTCA Contig125278 3050 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2353:7070_1:N:0:ATGTCA Contig632348 157 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3340:7053_1:N:0:ATGTCA Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3219:7901_1:N:0:ATGTCA Contig409344 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7672:8511_1:Y:0:ATGTCA Contig332226 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20468:9383_1:N:0:ATGTCA Contig14799 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12028:9670_1:N:0:ATGTCA Contig177693 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5069:9975_1:Y:0:ATGTCA Contig95428 1731 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16668:10184_1:N:0:ATGTCA Contig309227 164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11109:10340_1:Y:0:ATGTCT Contig111633 2994 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6156:13118_1:N:0:ATGTCA Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16005:13169_1:N:0:ATGTCA Contig412609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8883:13627_1:N:0:ATGTCA Contig268211 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6597:14698_1:N:0:ATGTCA Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11647:14719_1:N:0:ATGTCA Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17432:14737_1:N:0:ATGTCA Contig515112 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6714:15081_1:N:0:ATGTCA Contig211686 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18575:15221_1:N:0:ATGTCA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6035:15291_1:N:0:ATGTCA Contig14583 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9499:15797_1:N:0:ATGTCA Contig222913 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9927:15950_1:N:0:ATGTCA Contig29944 14403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17754:16292_1:Y:0:ATGTCA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9949:16720_1:N:0:ATGTCA Contig289911 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5359:17641_1:N:0:ATGTCA Contig670478 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7967:17710_1:N:0:ATGTCA Contig148987 1510 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11663:17653_1:N:0:ATGTCA Contig645560 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20200:17969_1:N:0:ATGTCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11623:18389_1:N:0:ATGTCA Contig434401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19240:19180_1:N:0:ATGTCA Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19944:19244_1:N:0:ATGTCA Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19813:19767_1:N:0:ATGTCA Contig694092 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20268:19877_1:N:0:ATGTCA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17836:20215_1:N:0:ATGTCA Contig308174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11187:20335_1:N:0:ATGTCA Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9178:20991_1:N:0:ATGTCA Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18069:20881_1:N:0:ATGTCA Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19641:23499_1:N:0:ATGTCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4280:24099_1:N:0:ATGTCA Contig167915 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3694:25772_1:N:0:GTGTCA Contig193410 522 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15436:26682_1:N:0:ATGTCA Contig515112 83 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 628430 (62.84%) aligned 0 times 126059 (12.61%) aligned exactly 1 time 245511 (24.55%) aligned >1 times 37.16% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 679860 (67.99%) aligned 0 times 116327 (11.63%) aligned exactly 1 time 203813 (20.38%) aligned >1 times 32.01% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 680297 (68.03%) aligned 0 times 116333 (11.63%) aligned exactly 1 time 203370 (20.34%) aligned >1 times 31.97% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 628755 (62.88%) aligned 0 times 126772 (12.68%) aligned exactly 1 time 244473 (24.45%) aligned >1 times 37.12% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_15_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_15_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 312803 Mapping efficiency: 31.3% Final Cytosine Methylation Report ================================= Total number of C's analysed: 1975447 Total methylated C's in CpG context: 341473 Total methylated C's in CHG context: 8763 Total methylated C's in CHH context: 91439 Total methylated C's in Unknown context: 71 Total unmethylated C's in CpG context: 47351 Total unmethylated C's in CHG context: 404563 Total unmethylated C's in CHH context: 1081858 Total unmethylated C's in Unknown context: 390 C methylated in CpG context: 87.8% C methylated in CHG context: 2.1% C methylated in CHH context: 7.8% C methylated in Unknown context (CN or CHN): 15.4% Bismark completed in 0d 4h 49m 4s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_16_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_16_s456_trimmed.fq.gz to zr1394_16_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_16_s456_trimmed.fq.gz to zr1394_16_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_16_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_16_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_16_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_16_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1095:2123_1:Y:0:NCGTCC 4 * 0 0 * * 0 0 TATATTAAAAATTAATTTTTAATATTTGTGT FFBBFFFFFFFF/FFFF/FFB/FFFFFFFFF YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from zr1394_16_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1095:2123_1:Y:0:NCGTCC 4 * 0 0 * * 0 0 TATATTAAAAATTAATTTTTAATATTTGTGT FFBBFFFFFFFF/FFFF/FFB/FFFFFFFFF YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from zr1394_16_s456_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1095:2123_1:Y:0:NCGTCC 4 * 0 0 * * 0 0 TACATTAAAAATCAATTCCCAATACTCACAC FFBBFFFFFFFF/FFFF/FFB/FFFFFFFFF YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from zr1394_16_s456_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-C00124:164:C7URDANXX:2:1101:1095:2123_1:Y:0:NCGTCC 0 Contig601866_GA_converted 678 0 31M * 0 0 TACATTAAAAATCAATTCCCAATACTCACAC FFBBFFFFFFFF/FFFF/FFB/FFFFFFFFF AS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:28T2 YT:Z:UU >>> Writing bisulfite mapping results to zr1394_16_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_16_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7005:3983_1:N:0:CCGTCC Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8999:3758_1:N:0:CCGTCC Contig28088 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7075:4171_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4715:4976_1:N:0:CCGTCC Contig440652 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9840:4770_1:N:0:CCGTCC Contig323147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6053:5045_1:N:0:CCGTCC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18991:5134_1:N:0:CCGTCC Contig36963 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1798:5275_1:N:0:CCGTCC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3143:5803_1:N:0:CCGTCC Contig201972 23671 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18718:6255_1:N:0:CCGTCC Contig219337 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1787:6782_1:N:0:CCGTCC Contig467918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8007:7217_1:N:0:CCGTCC Contig343758 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8529:8013_1:N:0:CCGTCC Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20737:8086_1:N:0:CCGTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10636:11089_1:N:0:CCGTCC Contig66311 4540 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19461:11148_1:N:0:CCGTCC Contig483955 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20986:11295_1:N:0:ACGTCC Contig445864 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20295:11614_1:N:0:CCGTCC Contig459853 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5358:12926_1:N:0:CCTTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10452:13915_1:N:0:CCGTCC Contig86417 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11694:13969_1:N:0:CCGTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3044:14330_1:Y:0:CCGTCC Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4976:15036_1:N:0:CCGTCC Contig542597 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2712:15673_1:N:0:CCGTCC Contig100134 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1370:16515_1:N:0:CCGTCC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9632:17901_1:N:0:CCGTCC Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4776:18734_1:N:0:CCGTCC Contig446109 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11980:18674_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16864:18600_1:Y:0:CCGTCC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15482:19239_1:Y:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9998:19803_1:N:0:CCGTCC Contig10805 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16588:20084_1:N:0:CCGTCC Contig501914 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20664:20950_1:N:0:CCGTCC Contig525996 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8884:21255_1:N:0:CCGTCC Contig382328 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2006:22194_1:N:0:CCGTCA Contig619369 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14540:22099_1:N:0:CCGTCC Contig153067 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12994:22908_1:N:0:CCGTCC Contig277739 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1844:23934_1:N:0:CCGTCC Contig689419 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3159:24203_1:N:0:CCGTCC Contig73089 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2998:24672_1:N:0:CCGTCC Contig50305 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4794:25439_1:N:0:CCGTCC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7732:25414_1:N:0:CCGTCC Contig161316 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1566:26030_1:N:0:CCGTCC Contig552881 128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11714:26652_1:N:0:CCATCC Contig33233 10579 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10086:27370_1:N:0:CCGTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2465:27751_1:N:0:CCGTCC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18395:28584_1:N:0:CCGTCC Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5367:28890_1:N:0:CCGTCC Contig466166 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15327:30208_1:N:0:CCGTCC Contig525996 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3641:30439_1:N:0:CCTTCC Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18282:31110_1:Y:0:CCGTCC Contig142178 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12287:32013_1:N:0:CCGTCC Contig102028 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15274:32127_1:N:0:CCGTCC Contig50387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14521:32600_1:N:0:CCGTCC Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7265:33531_1:N:0:CTGTCC Contig467912 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3821:34521_1:N:0:CCGTCC Contig641215 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2973:35009_1:N:0:CCGTCC Contig51452 7800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16536:35452_1:N:0:CCGTCC Contig611840 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11048:35824_1:N:0:CCGTCC Contig585564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17464:36760_1:N:0:CCGTCC Contig432722 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17056:38002_1:N:0:CCGTCC Contig408476 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17101:38261_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3705:38532_1:N:0:CCGTCC Contig28088 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18847:38747_1:N:0:CCGTCC Contig667511 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7135:39137_1:N:0:CCGTCC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14097:39884_1:N:0:CCGTCC Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3042:40344_1:N:0:CCGTCC Contig27854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14280:41815_1:N:0:CCGTCC Contig43736 3408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15715:41918_1:N:0:CCGTCC Contig171908 677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1873:42121_1:N:0:CCGTCC Contig88020 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6690:42154_1:N:0:CCGTCC Contig652004 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9167:42500_1:N:0:CCGTCC Contig672424 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5588:43151_1:N:0:CCGTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13953:43868_1:N:0:CCGTCC Contig201031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13101:44239_1:Y:0:CCGTCC Contig7715 7901 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6237:45140_1:Y:0:CCGTCC Contig292231 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11627:45139_1:N:0:CCGTCC Contig38166 34839 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14752:45343_1:N:0:CCGTCC Contig474502 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20294:45451_1:N:0:CCGTCC Contig57907 1139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5894:45637_1:N:0:CCGTCC Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8927:45724_1:N:0:CCGTCC Contig613563 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8645:46262_1:N:0:CCGTCC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9085:46507_1:N:0:CCGTCC Contig501995 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:21028:48179_1:N:0:CCGTCC Contig366056 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11015:48855_1:N:0:CCGTCC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4417:49885_1:N:0:CCGTCC Contig410800 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4399:52050_1:N:0:CCGTCC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3699:52431_1:N:0:CCGTCC Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5903:53944_1:N:0:CCGTCC Contig212938 1396 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:21153:54314_1:N:0:CCGTCC Contig96166 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8969:54514_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16748:55569_1:N:0:CCGTCC Contig193410 519 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17234:55920_1:N:0:CCGTCC Contig55460 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16525:56682_1:N:0:CCGTCC Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2501:57697_1:N:0:CCGTCC Contig205762 9561 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7969:57731_1:N:0:CCGTCC Contig35829 9237 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2540:57776_1:N:0:CCGTCC Contig599349 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6899:58013_1:N:0:CCGTCC Contig368699 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3214:58274_1:N:0:CCGTCC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17580:58333_1:N:0:CCGTCC Contig201334 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20007:59086_1:N:0:CCGTCC Contig657637 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13001:59509_1:N:0:CCGTCC Contig647063 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15114:61171_1:N:0:CCGTCC Contig531791 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19996:61512_1:N:0:CCGTCC Contig474507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16310:62540_1:N:0:CCGTCC Contig204541 5291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4741:63577_1:N:0:CCGTCC Contig51287 17403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14566:65009_1:N:0:CCGTCC Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6637:65501_1:N:0:CCGTCC Contig164256 455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18083:66135_1:N:0:CCGTCC Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8852:66462_1:N:0:CCGTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17150:66465_1:N:0:CCGTCC Contig642394 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6706:66848_1:N:0:CCGTCC Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11940:66995_1:N:0:CCGTCC Contig625821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20548:66978_1:N:0:CCGTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11079:67342_1:N:0:CCGTCC Contig672103 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2788:67960_1:N:0:CCGTCC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17672:71137_1:N:0:CCGTCC Contig8613 4640 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13518:71400_1:N:0:CCATCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4346:71585_1:N:0:CCGTCC Contig650299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18554:72118_1:N:0:CCGTCC Contig305850 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8337:73648_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19719:74935_1:N:0:CCGTCC Contig164256 455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18520:75435_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7286:75892_1:Y:0:CCGTCC Contig478966 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8176:76905_1:N:0:CCGTCC Contig452239 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:3794:77038_1:Y:0:CCGTCC Contig108161 5759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9348:77405_1:N:0:CCGTCC Contig32852 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5032:77948_1:N:0:CCGTCC Contig167621 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7676:78356_1:N:0:CCGTCC Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15874:78786_1:N:0:CCGTCC Contig75454 6584 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17154:78981_1:N:0:CCGTCC Contig650299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12168:79616_1:Y:0:CCGTCC Contig687352 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13631:79966_1:N:0:CCGTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14851:79765_1:Y:0:CCGTCC Contig549265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5032:80395_1:N:0:CCGTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11899:80541_1:N:0:CCGTCC Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7597:81016_1:N:0:CCGTCC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4613:81667_1:Y:0:CCGTCC Contig89834 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:21153:81643_1:N:0:CCGTCC Contig50744 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18941:82117_1:N:0:CCGTCC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7485:82296_1:N:0:CCGTCC Contig502030 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15656:82663_1:N:0:CCGTCC Contig447894 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19427:84318_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6940:84875_1:N:0:CCGTCC Contig583874 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8940:85957_1:N:0:CCGTCC Contig323147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16052:85952_1:N:0:CCGTCC Contig479741 236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5411:86491_1:N:0:CCGTCC Contig506473 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:6216:87557_1:N:0:CCGTCC Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1368:88594_1:N:0:CCGTCC Contig125469 906 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8890:88629_1:N:0:CCGTCC Contig350168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1179:89147_1:Y:0:CCGTCC Contig499184 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:7758:89567_1:N:0:CCGTCC Contig434401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:9825:89772_1:N:0:CCGTCC Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:2713:90447_1:N:0:CCGTCC Contig54192 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13458:90552_1:Y:0:CCGTCC Contig552780 191 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:5569:90841_1:N:0:CCGTCC Contig220441 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15154:90836_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11684:91516_1:N:0:CCGTCC Contig177563 438 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10056:92127_1:N:0:CCGTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10643:92066_1:N:0:CCGTCC Contig159174 728 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:20164:92180_1:N:0:CCGTCC Contig314005 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17758:92482_1:N:0:CCGTCC Contig155461 1000 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10532:92589_1:N:0:CCGTCC Contig558813 235 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:12208:92710_1:N:0:CCGTCC Contig607102 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:17393:92509_1:N:0:CCGTCC Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:11464:93248_1:N:0:CCGTCC Contig270173 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:19231:93441_1:N:0:CCGTCC Contig89845 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4172:93902_1:N:0:CCGTCC Contig78583 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:14739:94427_1:N:0:CCGTCC Contig81774 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15861:95151_1:N:0:CCGTCC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10827:95592_1:Y:0:CCGTCC Contig17038 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:15791:96551_1:N:0:CCGTCC Contig278967 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:18603:96748_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:4565:96816_1:N:0:CCGTCC Contig34874 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:13538:98123_1:N:0:CCGTCC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10906:98701_1:N:0:CCGTCC Contig141585 917 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:10718:98880_1:Y:0:CCGTCC Contig459476 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:8280:99733_1:N:0:CCGTCC Contig51323 6096 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:1631:100138_1:N:0:CCGTCC Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1101:16968:100171_1:N:0:CCGTCC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11030:3905_1:N:0:CCGTCC Contig96628 1443 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2159:5360_1:N:0:CCGTTC Contig302024 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14905:5308_1:Y:0:CCGTCC Contig76309 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11466:5730_1:N:0:CCGTCC Contig694092 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12895:5542_1:N:0:CCGTCC Contig359916 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5468:7923_1:N:0:CCGTCC Contig277518 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3450:8721_1:N:0:CCGTCC Contig373202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5015:8827_1:N:0:CCGTCC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5325:8839_1:N:0:CCGTCC Contig503412 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16437:9201_1:N:0:CCGTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3249:9297_1:N:0:CCGTCC Contig61736 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12015:9361_1:N:0:CCGTCC Contig191774 1015 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5011:9961_1:N:0:CCGTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6808:10241_1:N:0:CGGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11812:11138_1:N:0:CCGTCC Contig130735 14292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2648:12248_1:N:0:CCGTCC Contig434297 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13452:12124_1:N:0:CCGTCC Contig29480 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4322:13146_1:N:0:CCGTCC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13836:13038_1:N:0:CCGTCC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6262:13433_1:N:0:CCGTCC Contig216189 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9743:13305_1:N:0:CCGTCC Contig136795 9522 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14811:13417_1:N:0:CCGTCC Contig215266 3133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8668:13933_1:N:0:CCGTCC Contig663065 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17673:14580_1:N:0:CCGTCC Contig403699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12655:14811_1:N:0:CCGTCC Contig550493 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17144:15473_1:N:0:CCGTCC Contig542597 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11474:15541_1:N:0:CCGTCC Contig251073 269 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14920:16528_1:N:0:CCGTCC Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2295:16993_1:N:0:CCGTCC Contig37357 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13943:17984_1:N:0:CCGTCC Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12818:18020_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1272:18308_1:Y:0:CCGTCC Contig421908 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1352:18633_1:N:0:CCGTCC Contig90138 12435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2827:18796_1:N:0:CCGTCC Contig152967 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18292:18849_1:N:0:CCGTCC Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7459:19763_1:N:0:CCGTCC Contig444200 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3755:20174_1:N:0:CCGTCC Contig360627 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3915:20445_1:N:0:CCGTCC Contig459989 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2357:21013_1:N:0:CCGTCC Contig684398 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11138:21498_1:N:0:CCGTCC Contig274743 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11528:22187_1:N:0:CCGTCC Contig59768 2922 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5887:22525_1:N:0:CCGTCC Contig366746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6163:23428_1:N:0:CCGTCC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19949:24175_1:N:0:CCGTCC Contig659078 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18581:24457_1:N:0:CCGTCC Contig566447 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8567:24560_1:N:0:CCGTCC Contig688841 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13851:25803_1:N:0:CCGTCC Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19831:25982_1:Y:0:TCGTCC Contig130735 14296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8291:26822_1:Y:0:CCGTCC Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16224:27361_1:N:0:CCGTCC Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13230:27813_1:N:0:CCGTCC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20128:28829_1:N:0:CCGTCC Contig103363 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12542:29183_1:N:0:CCGTCC Contig58406 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18748:29549_1:N:0:CCGTCC Contig348762 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13726:29962_1:N:0:CCGTCC Contig119648 3341 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9220:31885_1:N:0:CCGTCC Contig201025 1570 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20466:31766_1:N:0:CCGTCC Contig448024 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9699:32836_1:N:0:CCGTCC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2480:33120_1:N:0:CCGTCC Contig81828 2865 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17183:33468_1:N:0:CCGTCC Contig692020 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19149:34190_1:N:0:CCGTCC Contig650443 126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8204:35669_1:N:0:CCGTCC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10154:36784_1:N:0:CCGTCC Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16568:38340_1:N:0:CCGTCC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17439:38651_1:N:0:CCGTCC Contig171935 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3753:39286_1:N:0:CCGTCC Contig695934 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16455:39722_1:N:0:CCGTCC Contig45126 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9271:39889_1:N:0:CCGTCC Contig178159 630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10291:39760_1:N:0:CCGTCC Contig361754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8300:40056_1:N:0:CCGTCC Contig513714 164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12464:40387_1:N:0:CCGTCC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16627:41292_1:N:0:CCGTCC Contig681846 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3432:41613_1:N:0:CCGTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19041:41953_1:Y:0:CCGTCC Contig555645 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7808:42300_1:Y:0:CCTTCC Contig74632 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2096:42801_1:N:0:CCGTCC Contig59951 1528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7430:43248_1:N:0:CCGTCC Contig128020 782 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9784:43355_1:N:0:CCGTCC Contig353771 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5597:44553_1:N:0:CCGTCC Contig407387 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3561:45236_1:N:0:CCGTCC Contig446707 153 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20114:45308_1:N:0:CCGTCC Contig149033 7167 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20363:46432_1:N:0:CCGTCC Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3597:46690_1:N:0:CCGTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2919:47763_1:N:0:CCGTCC Contig17411 2648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13926:47912_1:Y:0:CTGTCC Contig281876 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6059:49192_1:N:0:CCGTCC Contig641425 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10211:49280_1:N:0:CCGTCC Contig26351 7861 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15997:49364_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3936:50120_1:N:0:CCGTCC Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13555:50053_1:N:0:CCGTCC Contig22119 4007 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9034:50731_1:N:0:CCGTCC Contig289481 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2187:50942_1:Y:0:CCGTCC Contig179993 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15169:50863_1:N:0:CCGTCC Contig203873 989 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9456:51201_1:N:0:CCGTCC Contig28748 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11183:51482_1:N:0:CCGTCC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7278:51751_1:N:0:CCGTCC Contig524326 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13799:51883_1:N:0:CCGTCC Contig314603 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12358:52538_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5432:52764_1:N:0:CCGTCC Contig74113 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8022:53421_1:N:0:CCGTCC Contig495108 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18614:53311_1:N:0:CCGTCC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9516:53990_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11957:53898_1:N:0:CCGTCC Contig61033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18492:54458_1:N:0:CCGTCC Contig571751 6346 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18496:55173_1:N:0:CCGTCC Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8476:55335_1:Y:0:CCGTCC Contig338273 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9650:56162_1:N:0:CCGTCC Contig312918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8566:57321_1:Y:0:CCGTCC Contig589700 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12305:58065_1:N:0:CCGTCC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1407:58578_1:N:0:CCGTCC Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14529:58909_1:N:0:CCGTCC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15221:59500_1:N:0:CCGTCC Contig258676 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12643:60166_1:N:0:CCGTCC Contig684398 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5004:60282_1:Y:0:CCGTCT Contig622127 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8324:60500_1:N:0:CCGTCC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3499:60716_1:N:0:CCGTCC Contig49739 5164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6563:60520_1:N:0:CCGTCC Contig136795 9523 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5576:60859_1:N:0:CCGTCA Contig17012 18969 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16165:61434_1:N:0:CCGTCC Contig6151 1982 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17843:61678_1:N:0:CCGTCC Contig116384 2022 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12482:62082_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13597:62318_1:N:0:CCGTCC Contig520921 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3761:62625_1:N:0:ACGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6338:62943_1:N:0:CCGTCC Contig307270 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13963:62970_1:N:0:CCGTCC Contig52598 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10311:63209_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13487:63233_1:N:0:CCGTCC Contig355919 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5798:63482_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4112:63741_1:N:0:CCGTCC Contig392644 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20002:63622_1:N:0:CCGTCC Contig65612 1193 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18988:64166_1:N:0:CCGTCC Contig108121 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5386:64410_1:N:0:CCGTCC Contig18198 9634 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2713:64646_1:N:0:CCGTAC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12553:64625_1:N:0:CCGTCC Contig49739 5164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15141:64532_1:N:0:CCGTCC Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3199:65775_1:N:0:CCGTCC Contig359909 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10084:66519_1:N:0:CCGTCC Contig192678 431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15290:66805_1:N:0:CCGTCC Contig74113 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12075:67012_1:N:0:CCGTCC Contig169258 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11665:67468_1:N:0:CCGTCC Contig43880 6705 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20469:67281_1:N:0:CCGTCC Contig300033 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8711:67657_1:N:0:CCGTCC Contig507024 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15306:67746_1:N:0:CCGTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9040:67806_1:N:0:CCGTCC Contig128888 1221 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10535:68739_1:N:0:CCGTCC Contig81551 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14803:69223_1:N:0:CCGTCC Contig209981 755 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:4915:69613_1:N:0:CCGTCC Contig257690 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6297:71112_1:N:0:CCGTCC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8232:71150_1:N:0:CCGTCC Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14592:71438_1:N:0:CCGTCC Contig695641 181 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18520:71329_1:N:0:CCGTCC Contig309585 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16550:71558_1:N:0:CCGTCC Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17884:71797_1:N:0:CCGTCC Contig56162 1238 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10672:72614_1:N:0:CCGTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15221:72667_1:N:0:CCGTCC Contig147612 1303 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12768:73048_1:N:0:CCGTCC Contig587461 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17996:73641_1:N:0:CCGTCC Contig628340 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20868:74136_1:N:0:TCGTCC Contig434377 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7323:75631_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14253:76438_1:N:0:CCGTCC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7036:76528_1:N:0:CCGTCC Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20504:76697_1:N:0:CCGTCC Contig353098 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6754:77500_1:N:0:CCGTCC Contig355590 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17368:78092_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18236:78645_1:Y:0:CCGTCC Contig214722 344 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1587:78843_1:N:0:CCGTCC Contig263457 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19726:78986_1:N:0:TCGTCC Contig646532 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6384:79225_1:N:0:CCGTCC Contig694713 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11640:79293_1:N:0:CCGTCC Contig11067 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:17217:79803_1:N:0:CCGTCC Contig44707 8096 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11553:80041_1:N:0:CCGTCC Contig81762 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12672:80970_1:N:0:CCGTCC Contig416499 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:3033:81010_1:Y:0:CCGTCC Contig550121 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:12964:81172_1:N:0:CCGTCC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16380:81053_1:N:0:CCGTCC Contig625310 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19478:81097_1:N:0:CCGTCC Contig455761 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11768:81322_1:N:0:CCGTCC Contig372413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1108:81885_1:N:0:CTGTCC Contig599029 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13633:82182_1:N:0:ACGTCC Contig606426 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6258:83869_1:N:0:CCGTCC Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6619:84260_1:N:0:CCGTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:2063:84755_1:Y:0:CCGTCC Contig643767 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14448:85029_1:N:0:CCGTCC Contig22975 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10999:85469_1:N:0:CCGTCC Contig242791 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:10648:86186_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15690:87021_1:N:0:CCGTCC Contig40714 26448 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5498:87792_1:N:0:CCGTCC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9411:88899_1:N:0:CCGTCC Contig171841 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:13927:89182_1:N:0:CCGTCC Contig93671 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18646:89202_1:N:0:CCGTCC Contig63372 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20313:91013_1:Y:0:CCGTCC Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6643:91505_1:N:0:CCGTCC Contig286806 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14164:91641_1:N:0:CCGTCC Contig356374 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15914:92400_1:N:0:CCGTCC Contig230871 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7100:93208_1:N:0:CCGTCC Contig512524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:6835:93402_1:N:0:CCGTCC Contig636273 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:14263:93968_1:N:0:CCGTCC Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:7226:94278_1:Y:0:CCGTCT Contig122458 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15896:95112_1:N:0:CCGTCC Contig165915 3714 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19068:95248_1:N:0:CCGTCC Contig167723 9215 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:20493:95133_1:N:0:CCGTCC Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:9593:96035_1:Y:0:CCGTCC Contig540174 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:18600:97265_1:N:0:CCGTCC Contig159556 630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:5140:98161_1:N:0:CCGTCC Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:16403:98152_1:N:0:CCGTCC Contig637257 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:11732:98305_1:N:0:CCGTCC Contig467509 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8341:99136_1:N:0:CCGTCC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:15654:99053_1:N:0:CCGTCC Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:1806:99514_1:N:0:CCGTCC Contig42248 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:19893:99862_1:N:0:CCGTCC Contig9393 3230 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1102:8888:100001_1:N:0:CCGTCC Contig645560 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9365:2193_1:N:0:CCGTCC Contig29480 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18923:3081_1:N:0:CCGTCC Contig235187 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4850:3376_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8122:3533_1:N:0:CCGTCC Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16065:3800_1:N:0:CCGTCC Contig335327 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4962:4573_1:N:0:CCGTCC Contig126253 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17946:5638_1:N:0:CCGTCC Contig182 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10784:6437_1:N:0:CCGTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20331:6849_1:N:0:CCGTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14526:7919_1:N:0:CCGTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7021:9709_1:N:0:CCGTCC Contig86417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14233:9966_1:N:0:CCGTCC Contig9577 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4781:10145_1:N:0:CCGTCC Contig510040 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5196:10234_1:N:0:CCGTCC Contig43880 6705 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14735:10026_1:N:0:CCGTCC Contig292625 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9272:10293_1:N:0:CCGTCC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2956:11317_1:N:0:CCGTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9727:11705_1:N:0:CCGTCC Contig202303 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10308:12220_1:N:0:CCGTCC Contig62658 9492 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11288:12113_1:N:0:CCGTCC Contig598032 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6421:12858_1:N:0:CCGTCC Contig112911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5866:13903_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4226:14539_1:N:0:CCGTCC Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7225:14684_1:N:0:CCGTCC Contig485005 116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20277:14952_1:Y:0:CTGTCC Contig297517 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2290:15235_1:N:0:CCGTCC Contig166192 3451 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10991:15211_1:N:0:CCGTCC Contig91763 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5152:15793_1:N:0:CCGTCC Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12536:16476_1:N:0:CCGTCC Contig356550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6564:16532_1:N:0:CCGTCC Contig51441 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8944:16917_1:N:0:CCGTCC Contig202566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18454:16915_1:N:0:CCGTCC Contig146224 1408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8624:18221_1:N:0:CCGTCC Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13672:18789_1:N:0:CCGTCC Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15459:18810_1:N:0:CCGTCC Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12608:19084_1:N:0:CCGTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19432:19150_1:N:0:CCGTCC Contig48908 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3246:19731_1:N:0:CCGTCC Contig27060 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19835:19917_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16002:20363_1:N:0:CCGTCC Contig521469 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3491:21868_1:N:0:CCGTCC Contig506623 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5617:21988_1:N:0:CCGTCC Contig539459 272 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12820:22680_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12385:23161_1:N:0:CCGTCC Contig479741 236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5296:23621_1:N:0:CCGTCC Contig481957 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20275:24256_1:N:0:CCGTCC Contig485131 206 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19158:24859_1:N:0:CCGTCT Contig688624 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5998:25221_1:N:0:CCGTCC Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16799:27491_1:N:0:CCGTCC Contig203268 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19204:27923_1:N:0:CCGTCC Contig188597 1356 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7810:28379_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7874:28473_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9469:29023_1:N:0:CCGTCC Contig365444 887 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4667:29379_1:N:0:CCGTCC Contig21674 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15911:29659_1:Y:0:CCGTCC Contig277071 175 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17404:29553_1:N:0:CCGTCC Contig3531 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18760:29727_1:N:0:CCGTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14109:29939_1:N:0:CCGTCC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11214:31877_1:N:0:CCGTCC Contig235004 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4431:32761_1:N:0:CCGTCC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15973:33009_1:N:0:CCGTCC Contig490424 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15720:34526_1:N:0:CCGTCC Contig262735 4723 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11380:36373_1:N:0:CCGTCC Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19090:37241_1:N:0:CCGTCC Contig651625 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17251:37722_1:N:0:CCGTCC Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3572:38186_1:N:0:CCGTCC Contig661338 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12991:38802_1:Y:0:CCGTCC Contig58165 2667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16579:39235_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13607:40329_1:N:0:CCGTCC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5542:41274_1:N:0:CCGTCC Contig632960 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10448:41563_1:N:0:CCGTCC Contig262829 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10400:42366_1:N:0:CCGTCC Contig98345 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2157:42820_1:N:0:CCGTCC Contig632155 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10945:42778_1:N:0:CCGTCC Contig330829 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17700:42840_1:N:0:CCGTCC Contig212938 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6009:43468_1:N:0:CCGTCC Contig325954 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15350:43345_1:N:0:CCGTCC Contig667707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12995:43836_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10769:44783_1:N:0:CCGTCC Contig152184 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19679:44803_1:N:0:CCGTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7369:45508_1:N:0:CCGTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12549:45649_1:N:0:CCGTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:21251:45922_1:N:0:CCGTCC Contig77705 4547 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14089:46316_1:N:0:CCGTCC Contig421285 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1680:47087_1:N:0:CCGTCC Contig39649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13606:47164_1:N:0:CCGTCC Contig11552 903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6514:47811_1:N:0:CCGTCC Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18672:47815_1:N:0:CCGTCC Contig665102 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14616:48653_1:N:0:CCGTCC Contig566669 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16845:48994_1:N:0:CCGTCC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14153:50395_1:N:0:CCGTCC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19400:51368_1:N:0:CCGTCC Contig26043 300 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2260:51569_1:N:0:CCGTCC Contig10655 2276 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17571:52453_1:N:0:CCGTCC Contig107057 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6992:53364_1:N:0:ACGTCC Contig80341 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8179:53346_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9955:54905_1:N:0:CCGTCC Contig146590 1027 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12857:55626_1:N:0:CCGTCC Contig300940 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16994:55627_1:N:0:CCGTCC Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15839:56365_1:N:0:CCGTCC Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14006:56943_1:N:0:CCGTCC Contig430379 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12198:57766_1:N:0:CCGTCC Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13083:58115_1:N:0:TCGTCC Contig635557 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15711:58302_1:N:0:CCGTCC Contig638511 253 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1157:58973_1:N:0:CCGTCC Contig416330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6041:58965_1:N:0:CCGTCC Contig680764 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9301:59264_1:N:0:CCGTCC Contig144346 9312 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20100:59505_1:N:0:CCGTCC Contig62807 11400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7851:60046_1:N:0:CCGTCC Contig399618 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7099:62180_1:N:0:CCGTCC Contig222801 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20149:62304_1:N:0:CCGTCC Contig374833 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10586:63551_1:N:0:CCGTCC Contig298089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18485:63663_1:Y:0:CCGTCC Contig27060 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9248:65220_1:N:0:CCGTCC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1263:65279_1:N:0:CCGTCC Contig368699 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5476:66416_1:Y:0:CCGTCC Contig339466 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:7048:67750_1:N:0:CCGTCC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17186:67802_1:N:0:CCGTCC Contig309585 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4004:68838_1:N:0:CCGTCC Contig174180 2372 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8558:69478_1:N:0:CCGTCC Contig70467 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20002:71051_1:N:0:CCGTCC Contig668925 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8966:71666_1:N:0:CCGTCC Contig683564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5994:71885_1:N:0:CCGTCC Contig516897 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11495:72740_1:N:0:CCGTCC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6527:72819_1:N:0:CCGTCC Contig149115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19577:72919_1:N:0:CCGTCC Contig390860 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:3109:73126_1:Y:0:CCGTCC Contig167359 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:15879:73439_1:N:0:CCGTCC Contig368428 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16801:73476_1:N:0:CCGTCA Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18250:73315_1:N:0:CCGTCC Contig2289 17997 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17057:74205_1:N:0:CCGTCC Contig429009 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17375:74516_1:N:0:CCGTCA Contig542597 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:16043:74948_1:N:0:CCGTCC Contig362242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:1107:75284_1:N:0:CCGTCC Contig13760 1851 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6108:78410_1:N:0:CCGTCC Contig319646 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8557:79185_1:N:0:CCGTCC Contig285294 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14189:79013_1:N:0:CCGTCC Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11497:79343_1:N:0:CCGTCC Contig49120 4599 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20450:79389_1:N:0:CCGTCC Contig618782 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5915:80358_1:N:0:CCGTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9771:80394_1:N:0:CCGTCC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19939:80462_1:N:0:CCGTCC Contig647292 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8577:81175_1:N:0:CCGTCC Contig174078 546 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:17145:81898_1:N:0:CCGTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18323:82195_1:N:0:CCGTCC Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:11649:82731_1:Y:0:CCGTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4336:82959_1:N:0:CCGTCC Contig374161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14456:83139_1:N:0:CCATCC Contig477220 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10876:83645_1:N:0:CCGTCC Contig502333 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:2363:84270_1:N:0:CCGTCC Contig279960 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20693:84928_1:N:0:CCGTCC Contig513214 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20150:85712_1:Y:0:CCGTCC Contig9804 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:8650:87131_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14311:87211_1:N:0:CCGTCC Contig409780 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5208:88435_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6018:88490_1:N:0:CCGTCC Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5279:88561_1:N:0:CCGTCC Contig525996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4825:88869_1:N:0:CCGTCC Contig432787 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4639:89108_1:N:0:CCGTCC Contig5256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4910:89517_1:N:0:CCGTCC Contig487566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18976:90227_1:N:0:CCGTCC Contig325829 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9209:91171_1:N:0:CCGTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5449:91959_1:N:0:CCGTCC Contig581359 198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13630:93800_1:N:0:CCGTCC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:18547:93861_1:N:0:CCGTCC Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:9409:94321_1:N:0:CCGTCC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:5293:96117_1:N:0:CCGTCC Contig424685 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:20221:96924_1:N:0:CCGTCC Contig570761 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10716:97679_1:N:0:CCGTCC Contig41590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:10901:97566_1:N:0:CCGTCC Contig428474 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:13367:97546_1:N:0:CCGTCC Contig79991 2343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14011:97657_1:N:0:CCGTCC Contig409928 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:12791:97814_1:Y:0:CCGTCC Contig261808 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:4817:98744_1:N:0:CCGTCC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14218:98943_1:N:0:CCGTCC Contig277147 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:19131:98806_1:Y:0:CCGTCC Contig20442 18468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:6105:99406_1:N:0:CCGTCC Contig134238 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1103:14818:99253_1:N:0:CCGTCC Contig625320 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10500:2221_1:N:0:CCGTCC Contig20850 4525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8775:2538_1:N:0:CCGTCC Contig207398 512 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14355:3304_1:N:0:CCGTCC Contig186481 2339 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10910:3666_1:Y:0:CCGTCC Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14026:4277_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6364:5677_1:N:0:CCGTCC Contig201025 1570 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5216:6373_1:N:0:CCGTCC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15236:6899_1:N:0:CCGTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3930:7628_1:N:0:CCGTCC Contig552997 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4401:8097_1:N:0:CCGTCC Contig3129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19648:8821_1:N:0:CCGTCC Contig664291 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19475:9404_1:N:0:CCGTCC Contig420607 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20224:9764_1:N:0:CCGTCC Contig416854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6834:10013_1:N:0:CCGTCC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10884:10376_1:N:0:CCGTCC Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14652:10478_1:N:0:CCGTCC Contig257588 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18316:11205_1:N:0:CCGTCC Contig499018 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13090:11258_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12869:11978_1:N:0:CCGTCC Contig531891 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8044:12791_1:N:0:CCGTCC Contig451267 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5817:13118_1:N:0:CCGTCC Contig20834 2171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9148:14361_1:N:0:CCGTCC Contig366202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20487:14422_1:N:0:CCGTCC Contig294076 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5815:14846_1:N:0:CCGTCC Contig403699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2049:15353_1:N:0:CCGTCC Contig366382 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5032:15781_1:N:0:CCGTCC Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16621:15763_1:N:0:CCATCC Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19348:16058_1:N:0:CCGTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12062:17089_1:N:0:CCGTCC Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15651:17290_1:N:0:CCGTCC Contig128657 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8437:17635_1:N:0:CCGTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7455:18040_1:N:0:CCGTCC Contig67464 13173 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9231:18962_1:N:0:CCGTCC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20836:18886_1:N:0:CCGTCC Contig197144 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2806:20380_1:N:0:CCGTCC Contig34874 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9939:20670_1:N:0:CCGTCC Contig165074 804 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1655:22089_1:N:0:CCGTCC Contig76609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10290:22196_1:N:0:CCGTCC Contig344467 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19617:22451_1:N:0:CCGTCC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12450:22626_1:N:0:CCGTCC Contig56731 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17619:22675_1:Y:0:CCGTCC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1842:22820_1:N:0:CCGTCC Contig277071 175 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19661:23029_1:Y:0:CCGTCC Contig541420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15595:23568_1:N:0:CCGTCC Contig2520 40088 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3423:24629_1:N:0:CCGTCC Contig33021 20254 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11498:25097_1:N:0:CCGTCC Contig20834 2171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15489:25402_1:N:0:CCGTCC Contig152967 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13670:26521_1:N:0:CCGTCC Contig344485 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15300:26885_1:N:0:CCGTCC Contig58064 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13519:27012_1:N:0:CCGTCC Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13326:27615_1:N:0:CCGTCC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4838:28497_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5927:28283_1:N:0:CCGTCC Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18762:28560_1:N:0:CCGTCC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6455:29222_1:N:0:CCGTCC Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13328:29222_1:N:0:CCGTCC Contig288441 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14406:29135_1:N:0:CCGTCC Contig64210 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5192:29263_1:N:0:CCGTCC Contig50305 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19906:29635_1:N:0:CCGTCC Contig35829 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11434:29851_1:N:0:CCGTCC Contig63897 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15617:30108_1:N:0:CCGTCC Contig493352 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13131:30627_1:N:0:CCGTCC Contig262974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11186:31866_1:Y:0:CCGTCC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9687:32859_1:N:0:CCGTCC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1295:33917_1:N:0:CCGTCC Contig505463 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14485:34878_1:Y:0:CCGTCT Contig546908 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17425:36194_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1724:36449_1:N:0:CCGTCC Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1858:36314_1:N:0:CCGTCC Contig655118 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6313:37413_1:N:0:CCGTCC Contig63888 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11445:37458_1:N:0:CCGTCC Contig130274 1430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7443:37891_1:N:0:CCGTCC Contig525996 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6280:38411_1:N:0:CCGTCC Contig115575 3226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19034:38318_1:N:0:CCGTCC Contig8535 1520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6932:38717_1:N:0:CCGTCC Contig103678 2400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12475:40161_1:N:0:CCGTCC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17495:40228_1:N:0:CCGTCC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11703:40689_1:N:0:CCGTCC Contig96078 1732 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17791:40779_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7599:42199_1:N:0:CCGTCC Contig30655 1640 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5957:43038_1:N:0:CCGTCC Contig562041 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18214:43194_1:N:0:CCGTCC Contig290008 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21013:43845_1:N:0:CCGTCC Contig542597 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3561:44062_1:N:0:CCGTCC Contig114160 1042 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15557:44237_1:N:0:CCGTCC Contig46154 25392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5600:44271_1:N:0:CCGTCC Contig138423 7687 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1174:44537_1:N:0:CCGTCC Contig156977 676 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10305:44531_1:N:0:CCGTCC Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15435:45724_1:N:0:CCGTCC Contig292625 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7906:46160_1:N:0:ACGTCC Contig216251 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17517:46798_1:N:0:CCGTCC Contig172404 582 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10433:47924_1:N:0:CCGTCC Contig69591 6011 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15565:48944_1:N:0:CCGTCC Contig585433 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16881:49243_1:N:0:CCGTCC Contig185232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21092:49153_1:N:0:CCGTCC Contig467553 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:21125:49616_1:Y:0:CCGTCC Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11742:50496_1:N:0:CCGTCC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18485:50559_1:N:0:CCGTCC Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12117:51178_1:N:0:CCGTCC Contig201025 1568 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18244:51766_1:N:0:CCGTCC Contig268055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18161:52852_1:N:0:CCGTCC Contig154187 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18230:53596_1:N:0:CCGTCC Contig308581 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8584:54297_1:N:0:CCGTCC Contig41535 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:1430:54756_1:Y:0:CCGTCC Contig555770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8591:55482_1:N:0:CCGTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7851:58041_1:N:0:CCGTCC Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12189:58185_1:N:0:CCGTCC Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17994:58154_1:N:0:CCGTCC Contig628874 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7214:58491_1:N:0:CCGTCC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7729:58298_1:N:0:CCGTCC Contig624956 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11903:58462_1:N:0:CCGTCC Contig337849 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6945:59304_1:N:0:CCGTCC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6459:59579_1:N:0:CCGTCC Contig69591 6010 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15973:60917_1:N:0:CCGTCC Contig73251 13667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7745:61213_1:N:0:CCGTCC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3251:61410_1:N:0:CCGTCC Contig78851 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10543:61402_1:N:0:CCGTCC Contig665742 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12225:61822_1:N:0:CCGTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:17268:61797_1:N:0:CCGTCC Contig143571 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9012:62475_1:N:0:CCGTAC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3000:63738_1:N:0:CCGTCC Contig175736 11379 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3841:63520_1:N:0:CCGTCC Contig607731 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15182:64185_1:N:0:CCGTCC Contig25284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9483:65111_1:N:0:CCGTCC Contig4684 3607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15456:65686_1:N:0:CCGTCC Contig523701 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2803:66338_1:N:0:CCGTCC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14614:66581_1:N:0:CCGTCC Contig206979 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10700:67604_1:N:0:CCGTCC Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3273:69430_1:Y:0:CCGTCC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6358:69554_1:N:0:CCGTCC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10178:69924_1:N:0:CCGTCC Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5059:70002_1:N:0:CCGTCC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11023:70707_1:N:0:CCGTCC Contig586882 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3500:71100_1:N:0:CCGTCC Contig605085 7054 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10742:71215_1:N:0:CCGTCC Contig474950 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14654:71209_1:N:0:CCGTCC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20039:72214_1:N:0:CCGTCC Contig113835 725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3704:73129_1:N:0:CCGTCC Contig244411 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12048:73211_1:N:0:CCGTCC Contig492990 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19606:73414_1:Y:0:CCGTCA Contig364557 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6141:73647_1:N:0:CCGTCC Contig316898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:15862:73533_1:N:0:CCGTCC Contig46256 7463 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9093:74271_1:N:0:CCGTCC Contig13328 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19404:74868_1:N:0:CCGTCC Contig681175 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2677:75142_1:N:0:CCGTCC Contig268133 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3384:75412_1:N:0:CCGTCC Contig50305 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7933:75367_1:N:0:CCGTCC Contig383168 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:10015:75456_1:N:0:CCGTCC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8677:76433_1:N:0:CCGTCC Contig357721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4889:77404_1:N:0:CCGTCC Contig155111 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:19680:78126_1:N:0:CCGTCC Contig487247 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8386:78323_1:N:0:CCGTCC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12731:80339_1:N:0:CCGTCC Contig268133 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16496:80548_1:N:0:CCGTCC Contig208644 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20940:80827_1:N:0:CCGTCC Contig659141 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16937:82300_1:N:0:CCGTCC Contig391685 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7421:83848_1:N:0:CCGTCC Contig457780 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16662:83787_1:N:0:CCGTCC Contig124378 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18878:84119_1:N:0:CCGTCC Contig212108 1125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20701:84257_1:N:0:CCGTCC Contig76256 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:5350:85339_1:N:0:CCGTCC Contig3298 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12228:85420_1:Y:0:CCGTCC Contig576583 224 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:20557:85431_1:N:0:CCGTCC Contig13055 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:3636:86157_1:N:0:CCGTCC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13019:86454_1:N:0:CCGTCC Contig272891 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:8497:86501_1:N:0:CCGTCC Contig18716 78246 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:9002:87439_1:N:0:CCGTCC Contig135495 1650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:2079:87601_1:N:0:CCGTCC Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:6428:88289_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:11857:88631_1:N:0:CCGTCC Contig396949 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:16011:88587_1:N:0:CCGTCC Contig220388 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:4959:90285_1:N:0:CCGTCC Contig155283 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12191:90494_1:N:0:CCGTCC Contig89321 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:13801:90906_1:N:0:CCGTCC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:14976:90778_1:N:0:CCGTCC Contig228865 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:7865:91115_1:N:0:CCGTCC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:18651:91279_1:N:0:CCGTCC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:2:1104:12231:91716_1:N:0:CCGTCC Contig78583 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 672595 (67.26%) aligned 0 times 115308 (11.53%) aligned exactly 1 time 212097 (21.21%) aligned >1 times 32.74% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 630142 (63.01%) aligned 0 times 123903 (12.39%) aligned exactly 1 time 245955 (24.60%) aligned >1 times 36.99% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 630168 (63.02%) aligned 0 times 124642 (12.46%) aligned exactly 1 time 245190 (24.52%) aligned >1 times 36.98% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 671875 (67.19%) aligned 0 times 115396 (11.54%) aligned exactly 1 time 212729 (21.27%) aligned >1 times 32.81% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_16_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_16_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 306879 Mapping efficiency: 30.7% Final Cytosine Methylation Report ================================= Total number of C's analysed: 1920575 Total methylated C's in CpG context: 321346 Total methylated C's in CHG context: 8408 Total methylated C's in CHH context: 91489 Total methylated C's in Unknown context: 66 Total unmethylated C's in CpG context: 52800 Total unmethylated C's in CHG context: 380224 Total unmethylated C's in CHH context: 1066308 Total unmethylated C's in Unknown context: 353 C methylated in CpG context: 85.9% C methylated in CHG context: 2.2% C methylated in CHH context: 7.9% C methylated in Unknown context (CN or CHN): 15.8% Bismark completed in 0d 5h 7m 47s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_17_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_17_s456_trimmed.fq.gz to zr1394_17_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_17_s456_trimmed.fq.gz to zr1394_17_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_17_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_17_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_17_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_17_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1337:2117_1:Y:0:GTCCGC 4 * 0 0 * * 0 0 AATAATTAAATATTTTTTATTAATTAATTA >> Writing bisulfite mapping results to zr1394_17_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_17_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8086:6463_1:N:0:GTCCGC Contig248336 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3098:7222_1:N:0:GTCCGC Contig82938 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8252:7198_1:N:0:GTCCGC Contig115135 668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5258:7370_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14571:7324_1:N:0:GTCCGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10385:7551_1:N:0:GTCCGC Contig363560 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19814:8531_1:N:0:GTCCGC Contig128385 977 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2853:10260_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7053:11027_1:N:0:GTCCGC Contig315471 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15506:14120_1:N:0:GTCCGC Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5988:16494_1:N:0:GTCCGC Contig80513 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17614:16387_1:N:0:GTCCGC Contig666880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12702:18175_1:N:0:GTCCGC Contig654016 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9248:18450_1:N:0:GTCCGC Contig396442 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4562:18859_1:N:0:GTCCGC Contig76226 3875 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4702:19463_1:N:0:GTCCGC Contig240320 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1346:20900_1:N:0:GTCCGC Contig552881 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16511:21020_1:Y:0:GTCCGC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11307:23270_1:N:0:GTCCGC Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13314:23436_1:Y:0:GTCCGC Contig405567 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4382:23690_1:N:0:GTCCGC Contig49118 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11687:25457_1:N:0:GTCCGC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17943:26055_1:N:0:GTCCGC Contig215392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9320:29854_1:N:0:GTCCGC Contig44714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3783:30127_1:N:0:ATCCGC Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20736:31153_1:N:0:GTCCGC Contig204061 718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20291:32009_1:N:0:GTCCGC Contig315441 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9642:32395_1:N:0:GTCCGC Contig102060 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16657:32385_1:N:0:GTCCGC Contig277518 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3551:33452_1:N:0:GTCCGC Contig445209 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12719:33577_1:N:0:GTCCGC Contig93775 1630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7574:34620_1:N:0:GTCCGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20105:34819_1:N:0:GTCCGC Contig165074 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5130:35630_1:N:0:GTCCGC Contig617155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7518:36174_1:N:0:GTCCGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5583:36297_1:N:0:GTCCGC Contig590424 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13310:36463_1:N:0:GTCCGC Contig246362 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15444:36336_1:N:0:GTCCGC Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14768:38302_1:N:0:GTCCGC Contig135495 1649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12638:42216_1:N:0:GTCCGC Contig273910 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4919:45568_1:N:0:GTCCGC Contig602782 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12635:47803_1:N:0:GTCCGC Contig6429 1658 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16889:48593_1:N:0:GTCCGC Contig248331 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12125:50249_1:N:0:ATCCGC Contig66572 22676 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10897:50946_1:N:0:GTCCGC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10282:51422_1:N:0:ATCCGC Contig207320 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14466:51361_1:N:0:GTCCGC Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19368:51334_1:N:0:GTCCGC Contig96809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12267:54637_1:N:0:GTCCGC Contig277040 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13438:54787_1:N:0:GTCCGC Contig343139 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4987:55736_1:Y:0:GTCCGC Contig609847 1727 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3469:56447_1:N:0:GTCCGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7786:56981_1:N:0:GTCCGC Contig126242 2530 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10880:57352_1:N:0:GTCCGC Contig16858 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6153:64580_1:N:0:GTCCGC Contig366649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15958:64733_1:N:0:GTCCGC Contig279475 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16215:65431_1:N:0:GTCCGC Contig474507 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13617:66069_1:N:0:GTCCGC Contig427139 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8615:66833_1:N:0:GTCCGC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18257:67080_1:Y:0:GTCCGC Contig225243 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3223:67600_1:N:0:GTCCGC Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17511:68936_1:N:0:GTCCGC Contig88313 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17812:69745_1:N:0:GTCCGC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17737:69808_1:N:0:GTCCGC Contig505463 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7382:70506_1:N:0:GTCCGC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11760:74356_1:N:0:GTCCGC Contig689163 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20612:74680_1:N:0:GTCCGC Contig389102 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1499:75137_1:N:0:GTCCGC Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4799:75918_1:N:0:GTCCGC Contig380031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15710:76197_1:N:0:GTCCGC Contig36016 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1720:76848_1:N:0:GTCCGC Contig499705 169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3146:77402_1:N:0:GTCCGC Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5616:77298_1:N:0:GTCCGC Contig305445 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15031:77277_1:Y:0:GTCCGC Contig44935 2059 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1427:77702_1:N:0:GTCCGC Contig546031 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17025:77951_1:N:0:GTCCGC Contig17899 34298 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3966:78860_1:N:0:GTCCGC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9407:78760_1:N:0:ATCCGC Contig353860 332 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2349:80243_1:N:0:GTCCGC Contig679642 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16517:80002_1:N:0:GTCCGC Contig226190 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13440:83510_1:N:0:GTCCGC Contig143225 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13955:85267_1:N:0:GTCCGC Contig174935 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15947:85481_1:N:0:GTCCGC Contig67520 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7729:85819_1:N:0:GTCCGC Contig346524 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9340:87137_1:N:0:GTCCGC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9924:89934_1:N:0:GTCCGC Contig197828 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2011:90228_1:N:0:ATCCGC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16330:90122_1:N:0:GTCAGC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4877:92836_1:N:0:GTCCGC Contig650262 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19087:94339_1:N:0:ATCCGC Contig20124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20704:94925_1:N:0:GTCCGC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2117:97305_1:N:0:GTCCGC Contig10599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18265:97472_1:N:0:GTCCGC Contig275316 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14986:97653_1:N:0:GTCCGC Contig291086 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16402:99397_1:N:0:GTCCGC Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19090:2138_1:N:0:ATCCGC Contig587789 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3400:5705_1:N:0:GTCCGC Contig235004 654 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16440:6812_1:N:0:GTCCGC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18860:6987_1:N:0:GTCCGC Contig511188 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8823:8577_1:N:0:ATCCGC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2293:9803_1:N:0:GTCCGC Contig80662 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10489:10356_1:N:0:GTCCGC Contig140582 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4619:10731_1:N:0:GTCCGC Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6035:11603_1:N:0:GTCCGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17309:13902_1:N:0:GTCCGC Contig87246 12064 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10734:14127_1:N:0:GTCCGC Contig365347 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17567:14238_1:N:0:GTCCGC Contig279822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2659:14763_1:N:0:GTCCGC Contig505463 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19434:15169_1:N:0:GTCCGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4468:16377_1:N:0:GTCCGC Contig547280 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15604:18325_1:N:0:GTCCGC Contig609847 1727 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16068:19777_1:N:0:GTCCGC Contig356342 154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18176:20732_1:N:0:GTCCGC Contig483174 1107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20912:21015_1:N:0:GTCCGC Contig127394 5050 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7381:21807_1:N:0:GTCCGC Contig37313 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20476:22514_1:N:0:GTCCGC Contig96316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16119:23162_1:N:0:GTCCGC Contig573623 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20012:26421_1:N:0:GTCCGC Contig360647 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3476:26781_1:N:0:GTCCGC Contig328969 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21110:28126_1:N:0:ATCCGC Contig585433 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18487:28277_1:N:0:GTCCGC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16264:28954_1:N:0:GTCCGC Contig38042 3697 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3755:29741_1:N:0:GTCCGC Contig191529 2433 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14672:29636_1:N:0:GTCCGC Contig15508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6890:30629_1:N:0:GTCCGC Contig53092 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11468:30991_1:N:0:GTCCGC Contig191809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7799:31200_1:N:0:GTCCGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8513:32963_1:N:0:GTCCGC Contig252813 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10337:33044_1:N:0:GTCCGC Contig287141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10767:33359_1:N:0:GTCCGC Contig96730 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17255:35043_1:N:0:GTCCGC Contig306106 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5867:36102_1:N:0:GTCCGC Contig485738 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7776:36704_1:N:0:GTCCGC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14897:36715_1:N:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13368:37700_1:N:0:GTCCGC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14587:40482_1:N:0:GTCCGC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19977:40453_1:N:0:GTCCGC Contig254888 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8365:44955_1:N:0:GTCCGC Contig643484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4957:45730_1:N:0:GTCCGC Contig365277 168 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8878:45790_1:N:0:GTCCGC Contig13879 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1374:46187_1:N:0:GTCCGC Contig655143 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19967:47829_1:N:0:GTCCGC Contig424212 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18310:48253_1:N:0:GTCCGC Contig473345 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10772:49795_1:N:0:GTCCGC Contig534432 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1916:51589_1:Y:0:TTCCGC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16645:52204_1:Y:0:GTCCGC Contig142 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18021:55434_1:N:0:GTCCGC Contig21483 8467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7513:58415_1:N:0:GTCCGC Contig152795 602 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17458:59817_1:N:0:GTCCGC Contig49997 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5944:60655_1:N:0:GTCCGC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12036:61236_1:N:0:GTCCGC Contig651649 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3687:62084_1:N:0:GTCCGC Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4052:62638_1:N:0:GTCCGC Contig207398 511 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5263:63525_1:N:0:GTCCGC Contig23470 510 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9394:65048_1:N:0:GTCCGC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13982:65363_1:N:0:GTCCGC Contig517203 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18499:65493_1:N:0:GTCCGC Contig664494 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14616:65505_1:N:0:GTCCGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10591:66852_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8105:69427_1:N:0:GTCCGC Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3667:70776_1:N:0:GTCCGC Contig88480 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16734:71088_1:N:0:GTCCGC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6658:72311_1:N:0:GTCCGC Contig358108 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14204:72419_1:N:0:GTCCGC Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10534:73043_1:N:0:GTCCGC Contig328148 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7892:73831_1:Y:0:GTCCGC Contig144154 1406 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9342:75171_1:N:0:GTCCGC Contig76603 19390 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2107:76012_1:N:0:GTCCGC Contig182325 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9276:76897_1:Y:0:GTCCGC Contig281510 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18210:79396_1:N:0:GTCCGC Contig86125 1907 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5782:80259_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8659:80704_1:N:0:GTCCGC Contig193909 282 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12515:82475_1:N:0:GTCCGC Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18251:82278_1:N:0:GTCCGC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6667:84683_1:N:0:GTCCGC Contig363124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6731:84937_1:N:0:GTCCGC Contig485095 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3808:85550_1:N:0:GTCCGC Contig107186 1331 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5006:85769_1:N:0:GTCCGC Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16150:85811_1:N:0:GTCCGC Contig50279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19541:86615_1:N:0:GTCCGC Contig263340 257 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6526:87216_1:N:0:GTCCGC Contig279980 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17475:89158_1:N:0:GTCCGC Contig17045 169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18424:89042_1:N:0:GTCCGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19808:89073_1:N:0:ATCCGC Contig181954 887 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21260:92058_1:Y:0:GTCCGC Contig629477 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12290:92502_1:N:0:GTCCGC Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4896:95117_1:N:0:GTCCGC Contig414714 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20576:96790_1:N:0:GTCCGC Contig5906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14695:98349_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3258:2210_1:N:0:GTCCGC Contig363124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16955:2326_1:N:0:GTCCGC Contig22621 6888 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8315:2593_1:N:0:GTCCGC Contig413 31660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5011:3314_1:N:0:GTCCGC Contig344247 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5543:3319_1:N:0:GTCCGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4883:5303_1:N:0:GTCCGC Contig122139 1429 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10762:6318_1:N:0:GTCCGC Contig117890 6366 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11774:11232_1:N:0:GTCCGC Contig64271 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12182:13672_1:N:0:GTCCGC Contig435848 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2566:16787_1:N:0:GTCCGC Contig385096 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10105:18575_1:N:0:GTCCGC Contig22197 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7831:20315_1:N:0:GTCCGC Contig433074 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15492:21347_1:N:0:GTCCGC Contig92498 4134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21117:21251_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16277:21929_1:N:0:GTCCGC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13359:23343_1:N:0:GTCCGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17576:24408_1:N:0:GTCCGC Contig455813 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8252:25181_1:N:0:GTCCGC Contig329075 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18720:25015_1:N:0:GTCCGC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16593:25334_1:N:0:GTCCGC Contig630590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18568:25539_1:N:0:GTCCGC Contig268055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5751:26981_1:N:0:GTCCGC Contig593690 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10950:28245_1:N:0:GTCCGC Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15879:30077_1:N:0:GTCCGC Contig319875 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9009:30551_1:N:0:GTCCGC Contig311100 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17958:31151_1:N:0:GTCCGC Contig4830 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11727:31300_1:N:0:GTCCGC Contig182269 1257 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18652:37237_1:N:0:GTCCGC Contig402652 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6001:37265_1:N:0:GTCCGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6852:37549_1:N:0:GTCCGC Contig76988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8806:39594_1:N:0:GTCCGC Contig408476 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19427:40334_1:N:0:GTCCGC Contig663187 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20642:44753_1:Y:0:GTCCGC Contig292091 9069 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6403:45208_1:N:0:GTCCGC Contig133806 756 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11203:48626_1:N:0:GTCCGC Contig138423 7687 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2713:51076_1:N:0:GTCCGC Contig276556 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12628:52211_1:N:0:GTCCGC Contig388401 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2662:54391_1:N:0:GTCCGC Contig636584 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10606:54403_1:N:0:GTCCGC Contig7277 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9899:55551_1:N:0:GTCCGC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12965:57737_1:N:0:GTCCGC Contig637676 526 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11032:58417_1:N:0:GTCCGC Contig341826 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13830:63478_1:N:0:GTCCGC Contig461123 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9383:63768_1:Y:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7757:66058_1:N:0:GTCCGC Contig667066 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5070:66418_1:Y:0:ATCCGC Contig356577 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5369:66840_1:N:0:GTCCGC Contig581747 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2421:68068_1:N:0:GTCCGC Contig10599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10351:68836_1:N:0:GTCCGC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4581:69121_1:N:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9137:71405_1:N:0:GTCCGC Contig139114 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7777:72359_1:N:0:GTCCGC Contig357721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12536:72484_1:N:0:GTCCGC Contig335203 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14168:73674_1:N:0:GTCCGC Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7333:75336_1:N:0:GTCCGC Contig654702 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20923:75425_1:N:0:GTCCGC Contig266248 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17682:75582_1:N:0:GTCCGC Contig371094 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6687:75919_1:N:0:GTCCGT Contig76601 4275 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19281:76495_1:N:0:GTCCGC Contig145769 1265 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18564:78217_1:N:0:GTCCGC Contig547001 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16060:78392_1:N:0:GTCCGC Contig303156 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12400:79176_1:N:0:GTCCGC Contig16979 530 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19314:79068_1:N:0:GTCCGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3355:81224_1:N:0:GTCCGC Contig60600 18999 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14638:81282_1:N:0:GTCCGC Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16798:86253_1:N:0:GTCCGC Contig188415 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19993:88385_1:N:0:GTCCGC Contig329075 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6544:89120_1:Y:0:GTCCGC Contig630490 162 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21143:90855_1:N:0:GTCCGC Contig113133 1413 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8300:91359_1:N:0:GTCCGC Contig229087 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9077:91413_1:N:0:GTCCGC Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20080:92075_1:N:0:GTCCGC Contig127898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17089:92885_1:N:0:GTCCGC Contig99761 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5796:94497_1:N:0:GTCCGC Contig534403 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17992:4289_1:Y:0:GTCCGC Contig179417 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6270:4653_1:N:0:GTCCGC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8290:5034_1:Y:0:GTCCGC Contig34929 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20784:6373_1:N:0:GTCCGC Contig338388 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16228:6679_1:N:0:GTCCGC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2026:7864_1:N:0:GTCCGC Contig666842 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15588:9667_1:N:0:GTCCGC Contig90933 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12298:11614_1:N:0:GTCCGC Contig67161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6196:12673_1:N:0:GTCCGC Contig87111 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12758:14714_1:N:0:GTCCGC Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9912:15574_1:N:0:GTCCGC Contig35645 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15177:17522_1:N:0:GTCCGC Contig411376 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9324:19494_1:N:0:GTCCGC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11943:20283_1:N:0:GTCCGC Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3184:21513_1:N:0:GTCCGC Contig618754 171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8053:22696_1:N:0:GTCCGC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17027:22667_1:N:0:GTCCGC Contig256679 216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8328:23471_1:N:0:GTCCGC Contig353685 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6723:24354_1:Y:0:GTCCGG Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10699:26113_1:N:0:GTCCGC Contig315471 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12733:27929_1:N:0:GTCCGC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10379:29665_1:N:0:GTCCGC Contig22741 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13400:29513_1:N:0:GTCCGC Contig624052 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1806:29952_1:N:0:GTCCGC Contig78583 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3630:30322_1:Y:0:GACCGC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14865:33714_1:N:0:GTCCGC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6485:35276_1:N:0:GTCCGC Contig502030 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10504:36018_1:N:0:GTCCGC Contig67207 3391 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12226:37489_1:N:0:GTCCGC Contig334449 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14103:38213_1:N:0:GTCCGC Contig144154 1404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11538:38910_1:N:0:GTCCGC Contig85043 15664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14557:39514_1:N:0:GTCCGC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15046:41918_1:N:0:GTCCGC Contig286090 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19620:45927_1:N:0:GTCCGC Contig70548 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3315:51343_1:N:0:GTCCGC Contig462171 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12628:52507_1:N:0:GTCCGC Contig596051 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11739:53108_1:N:0:GTCCGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6422:53903_1:N:0:GTCCGC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17683:55297_1:N:0:GTCCGC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4368:56510_1:N:0:GTCCGA Contig440379 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3966:57335_1:N:0:GTCCGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1700:57720_1:N:0:GTCCGC Contig365277 168 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19602:57955_1:Y:0:GTCCGC Contig401373 647 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13642:59356_1:N:0:GTCCGC Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14476:59649_1:N:0:GTCCGC Contig302713 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12701:60493_1:N:0:GTCCGC Contig307484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20207:60358_1:N:0:GTCCGC Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12092:61983_1:N:0:ATCCGC Contig594330 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17522:62064_1:N:0:GTCCGC Contig505852 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19425:62200_1:N:0:GTCCGC Contig290479 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5227:63288_1:N:0:GTCCGC Contig255798 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7163:64339_1:N:0:GTCCGC Contig646241 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14536:64810_1:N:0:GTCCGC Contig689438 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1235:65065_1:Y:0:GTCCGC Contig527502 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16542:65273_1:N:0:GTCCGC Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9347:65785_1:N:0:GTCCGC Contig70422 4961 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5871:66782_1:N:0:GTCCGC Contig299736 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14238:66933_1:N:0:GTCCGC Contig55734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13982:67657_1:N:0:GTCCGC Contig5935 5864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5192:69499_1:N:0:GTCCGC Contig275940 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19085:69350_1:N:0:GTCCGC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13786:69775_1:N:0:GTCCGC Contig46726 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6225:71059_1:N:0:GTCCGC Contig501385 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8331:71271_1:N:0:GTCCGC Contig471101 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6652:71559_1:Y:0:ATCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2364:72443_1:N:0:GTCCGC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4641:73891_1:N:0:GTCCGC Contig416040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7443:74475_1:N:0:GTCCGC Contig89284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9583:74635_1:N:0:GTCCGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12509:75714_1:N:0:GTCCGC Contig133837 849 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14239:75807_1:N:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6257:76060_1:N:0:GTCCGC Contig615096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8760:77967_1:N:0:GTCCGC Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5527:78918_1:N:0:GTCCGC Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3156:79406_1:N:0:GTCCGC Contig63056 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9134:80092_1:N:0:GTCCGC Contig238072 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12394:81473_1:N:0:GTCCGC Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14030:81721_1:N:0:GTCCGC Contig498410 208 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17246:81793_1:N:0:GTCCGC Contig78583 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18030:82090_1:Y:0:GTCCGC Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5358:83226_1:N:0:GTCCGC Contig49163 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17140:83183_1:N:0:GTCCGC Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15370:84883_1:N:0:GTCCGC Contig535680 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19059:88450_1:N:0:GTCCGC Contig659141 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3668:89081_1:N:0:GTCCGC Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21065:89032_1:N:0:GTCCGC Contig273760 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2154:89479_1:Y:0:GTCCAC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8506:89743_1:N:0:GTCCGC Contig279118 193 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18575:89683_1:Y:0:GTCCGC Contig21480 11700 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19212:90570_1:N:0:GTCCGC Contig50279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5525:90810_1:N:0:ATCCGC Contig689952 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1750:91730_1:N:0:GTCCGC Contig428474 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12836:93385_1:N:0:GTCCGC Contig667395 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15061:93263_1:N:0:GTCCGC Contig125523 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5953:95208_1:N:0:GTCCGC Contig583622 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4320:96267_1:N:0:GTCCGC Contig223261 1603 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17016:96277_1:N:0:ATCCGC Contig214667 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11691:97901_1:N:0:GTCCGC Contig253397 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19377:98483_1:N:0:GTCCGC Contig690520 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1771:98513_1:N:0:GTCCGC Contig20442 18468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9779:98905_1:N:0:GTCCGC Contig46387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17546:99597_1:N:0:GTCCGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4728:2701_1:N:0:GTCCGC Contig439572 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8438:4732_1:N:0:GTCCGC Contig491451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7664:5091_1:N:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1702:6946_1:N:0:GTCCGC Contig105161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10609:6908_1:Y:0:GTCCGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10052:9219_1:N:0:GTCCGC Contig236103 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20987:9999_1:Y:0:GTCCGC Contig433146 646 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18910:10714_1:N:0:GTCCGC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18537:12164_1:N:0:GTCCGC Contig315471 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17447:16741_1:N:0:GTCCGC Contig536865 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8512:17199_1:N:0:GTCCGC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11227:17357_1:Y:0:GTCCGC Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16529:17297_1:N:0:GTCCGC Contig635070 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16254:18244_1:N:0:GTCCGC Contig282820 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18989:18580_1:N:0:GTCCGC Contig4684 3607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13117:21994_1:N:0:GTCCGC Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1588:22960_1:N:0:GTCCGC Contig423128 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7805:23496_1:N:0:GTCCGC Contig370029 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19326:24865_1:N:0:GTCCGC Contig484602 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19070:25175_1:Y:0:GTCCGC Contig143571 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8028:25421_1:N:0:GTCCGC Contig49105 10005 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14269:28327_1:N:0:GTCCGC Contig143855 2496 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3581:29828_1:N:0:GTCCGC Contig40676 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16191:29825_1:N:0:GTCCGC Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20364:30722_1:N:0:GTCCGC Contig613909 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19103:31230_1:N:0:GTCCGC Contig16579 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15253:31638_1:Y:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3865:31908_1:N:0:GTCCGC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2236:32938_1:N:0:GTCCGC Contig344467 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18242:33174_1:N:0:GTCCGC Contig442016 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3883:34283_1:N:0:GTCCGC Contig52115 2645 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17956:36085_1:N:0:GTCCGC Contig591035 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18958:36180_1:N:0:GTCCGC Contig85889 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19733:38259_1:N:0:GTCCGC Contig89284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3983:38738_1:N:0:GTCCGC Contig7715 7903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20154:39541_1:N:0:GTCCGC Contig183308 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3295:40335_1:N:0:GTCCGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4515:41188_1:N:0:GTCCGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14318:42146_1:N:0:GTCCGC Contig526960 126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15214:47547_1:N:0:GTCCGC Contig634641 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12345:47991_1:N:0:GTCCGC Contig39396 12325 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17454:47786_1:N:0:GTCCGC Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13964:48166_1:N:0:ATCCGC Contig52402 2649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3381:50041_1:N:0:GTCCGC Contig585490 7176 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6766:51955_1:N:0:GTCCGC Contig451423 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4798:52046_1:N:0:ATCCGC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7115:53547_1:N:0:GTCCGC Contig215392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4371:54352_1:Y:0:GTCCGC Contig74916 7867 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14300:54669_1:N:0:GTCCGC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15592:56219_1:N:0:GTCCGC Contig274373 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3204:58027_1:N:0:GTCCGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2828:59626_1:N:0:GTCCGC Contig27922 26322 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9941:60901_1:N:0:GTCCGC Contig562332 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2351:61761_1:N:0:GTCCGC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13455:62888_1:N:0:GTCCGC Contig521469 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9518:63981_1:N:0:GTCCGC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7703:66219_1:Y:0:GTCCGC Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3474:66470_1:N:0:GTCCGC Contig165954 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5229:68374_1:N:0:GTCCGC Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8900:72388_1:N:0:GTCCGC Contig662875 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19727:72309_1:N:0:GTCCGC Contig557360 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17000:72627_1:N:0:GTCCGC Contig679043 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16756:74275_1:N:0:GTCCGC Contig690944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4830:74520_1:N:0:GTCCGC Contig396655 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18052:77396_1:N:0:ATCCGC Contig202307 669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10695:77678_1:N:0:GTCCGC Contig630188 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15871:78683_1:N:0:GTCCGC Contig341961 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18017:78933_1:Y:0:GTGCGC Contig272626 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3076:79137_1:N:0:GTCCGC Contig195731 518 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13338:80828_1:N:0:ATCCGC Contig350571 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20116:81395_1:Y:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15113:84118_1:N:0:GTCCGC Contig629151 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19092:84887_1:N:0:GTCCGC Contig578184 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4872:86343_1:N:0:ATCCGC Contig336482 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13630:86878_1:N:0:GTCCGC Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15181:88634_1:N:0:GTCCGC Contig343484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12868:89674_1:N:0:GTCCGC Contig363713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20990:90847_1:N:0:GTCCGC Contig44931 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17402:91532_1:N:0:GTCCGC Contig673492 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5417:91980_1:N:0:GTCCGC Contig14819 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12881:93954_1:N:0:GTCCGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3613:94672_1:N:0:GTCCGC Contig116563 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7039:95629_1:N:0:GTCCGC Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3545:95800_1:N:0:GTCCGC Contig20442 18471 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12410:98759_1:N:0:GTCCGC Contig25460 7445 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3690:99887_1:Y:0:GTCTGC Contig16057 275 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17454:99816_1:N:0:GTCCGC Contig505463 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13124:2579_1:N:0:GTCCGC Contig694262 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6790:3360_1:N:0:GTCCGC Contig114914 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14191:3394_1:N:0:GTCCGC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5899:4276_1:N:0:GTCCGC Contig5431 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15831:4721_1:N:0:TTCCGC Contig28355 26452 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5766:5182_1:N:0:GTCCGC Contig593690 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5162:5865_1:N:0:GTCCGC Contig523644 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5108:6890_1:N:0:GTCCGC Contig69965 4741 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8869:6970_1:N:0:ATCCGC Contig529578 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9003:7516_1:N:0:GTCCGC Contig509189 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3604:9297_1:N:0:GTCCGC Contig401421 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3150:10707_1:N:0:GTCCGC Contig126367 15452 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15848:11643_1:N:0:GTCCGC Contig39308 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9931:12101_1:N:0:GTCCGC Contig381756 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8247:14824_1:N:0:GTCCGC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13988:16173_1:N:0:GTCCGC Contig119126 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12814:18258_1:N:0:GTCCGC Contig101130 1735 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19831:19726_1:N:0:GTCCGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18795:20420_1:N:0:GTCCGC Contig249546 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16475:21442_1:N:0:GTCCGC Contig291086 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11889:22357_1:N:0:GTCCGC Contig200446 764 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19195:22477_1:N:0:GTCCGC Contig473335 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19977:22428_1:N:0:GTCCGC Contig683710 126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14296:24975_1:N:0:GTCCGC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19653:24895_1:N:0:GTCCGC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4801:25269_1:N:0:GTCCGC Contig96738 1298 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11084:27689_1:N:0:ATCCGC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18404:27516_1:N:0:GTCCGC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2854:28203_1:Y:0:GTCCGC Contig679343 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16276:28294_1:N:0:GTCCGC Contig556512 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17973:28656_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6375:29035_1:N:0:GTCCGC Contig63056 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20536:29133_1:Y:0:GTCCGC Contig11209 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9667:29266_1:N:0:GTCCGC Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1427:29638_1:N:0:GTCCGC Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9175:31258_1:Y:0:GTCCGC Contig686402 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9061:33967_1:N:0:ATCCGC Contig659141 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4810:34546_1:N:0:GTCCGC Contig157321 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15380:34787_1:N:0:GTCCGC Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16491:35129_1:N:0:GTCCGC Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13867:36010_1:N:0:GTCCGC Contig50451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19153:36396_1:N:0:GTCCGC Contig492133 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17107:37147_1:Y:0:GTCCGC Contig629548 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5608:37343_1:N:0:GTCCGC Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9467:37702_1:N:0:GTCCGC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19430:39202_1:N:0:GTCCGC Contig164419 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3621:40976_1:N:0:GTCCGC Contig249829 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12310:45411_1:N:0:GTCCGC Contig285931 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12536:45370_1:N:0:GTCCGC Contig397146 363 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5178:45623_1:N:0:GTCCGC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8207:45993_1:Y:0:GTCCGT Contig346842 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8006:46372_1:N:0:GTCCGC Contig598293 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20805:47190_1:N:0:GTCCGC Contig263610 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16161:47995_1:N:0:GTCCGC Contig2939 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1850:48873_1:N:0:GTCCGC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6834:49910_1:N:0:GTCCGC Contig193410 519 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12966:50912_1:N:0:GTCCGC Contig313895 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2911:51997_1:N:0:GTCCGC Contig116082 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8973:52061_1:N:0:GTCCGC Contig54063 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20617:52208_1:N:0:GTCCGC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6651:52561_1:N:0:GTCCGC Contig417912 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3629:53035_1:N:0:GTCCGC Contig29455 5471 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9788:53912_1:N:0:GTCCGC Contig4684 3606 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10459:53965_1:N:0:GTCCGC Contig185887 419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10700:53939_1:N:0:GTCCGC Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9122:57058_1:N:0:GTCCGC Contig115958 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4278:57651_1:N:0:GTCCGC Contig7770 2455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17886:58523_1:N:0:GTCCGC Contig390761 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16583:59983_1:N:0:GTCCGC Contig329075 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5888:62344_1:N:0:GTCCGC Contig633921 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18287:63462_1:N:0:GTCCGC Contig550137 184 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1123:64529_1:N:0:GTCCGC Contig440718 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2834:64549_1:N:0:GTCCGC Contig33016 8880 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8512:64540_1:N:0:GTACGC Contig469478 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17299:65872_1:N:0:GTCCGC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16677:66438_1:N:0:GTCCGC Contig285931 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11903:67396_1:N:0:GTCCGC Contig242743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18844:67572_1:N:0:GTCCGC Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17193:68309_1:N:0:GTCCGC Contig192678 431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15922:68729_1:N:0:GTCCGC Contig480629 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18284:68727_1:N:0:GTCCGC Contig207029 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6729:69622_1:N:0:GTCCGC Contig263457 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19974:70476_1:N:0:GTCCGC Contig663186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6057:71041_1:N:0:GTCCGC Contig282312 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19137:71865_1:N:0:GTCCGC Contig272891 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19598:72217_1:N:0:GTCCGC Contig176386 464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15419:74007_1:N:0:GTCCGC Contig300004 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14387:81712_1:N:0:GTCCGC Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16968:81854_1:N:0:GTCCGC Contig514851 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3340:82527_1:N:0:GTCCGC Contig188781 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9800:84271_1:N:0:GTCCGC Contig128449 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10942:84417_1:N:0:GTCCGC Contig78733 5853 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17802:85764_1:N:0:GTCCGC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16020:90072_1:N:0:GTCCGC Contig497618 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5148:90563_1:N:0:GTCCGC Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7139:91258_1:N:0:GTCCGC Contig441188 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9610:91623_1:N:0:GTCCGC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19292:92193_1:N:0:GTCCGC Contig43880 6706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14465:92495_1:Y:0:GTCGGC Contig373629 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6755:93180_1:N:0:GTCCGC Contig262974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20762:93492_1:N:0:GTCCGC Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20396:94048_1:N:0:GTCCGC Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8932:96271_1:N:0:GTCCGC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5164:96984_1:N:0:GTCCGC Contig598804 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20349:98721_1:N:0:GTCCGC Contig482882 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8141:98926_1:N:0:GTCCGC Contig551952 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4903:99340_1:N:0:GTCCGC Contig353669 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5638:99336_1:N:0:GTCCGC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17952:7409_1:N:0:GTCCGC Contig211586 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1784:8623_1:N:0:GTCCGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2126:8676_1:N:0:GTCCGC Contig204317 740 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14557:9894_1:N:0:GTCCGC Contig120905 681 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15403:10241_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2306:10458_1:N:0:GTCCGC Contig39060 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5316:10955_1:N:0:GTCCGC Contig325790 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8631:10977_1:N:0:GTCCGC Contig174212 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12105:11113_1:N:0:ATCCGC Contig21737 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18249:12343_1:Y:0:GTCCGC Contig577192 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5559:13071_1:Y:0:GTCCGC Contig602550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3375:13375_1:N:0:GTCCGC Contig602782 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18686:15198_1:Y:0:GTCTGC Contig491066 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15001:16983_1:N:0:GTCCGC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19479:17262_1:N:0:GTCCGC Contig532790 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6631:17958_1:N:0:GTCCGC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8026:20056_1:N:0:GTCCGC Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12326:20567_1:N:0:GTCCGC Contig374780 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10540:21029_1:Y:0:ATCCGC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3523:21476_1:N:0:GTCCGC Contig505463 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20545:21310_1:N:0:GTCCGC Contig141460 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3554:21540_1:N:0:GTCCGC Contig684395 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4226:21737_1:N:0:GTCCGA Contig676493 198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8919:22481_1:N:0:GTCCGC Contig649368 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19412:22566_1:N:0:GTCCGC Contig49687 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18941:23053_1:N:0:GTCCGC Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5786:23439_1:N:0:GTCCGC Contig492106 459 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14980:23300_1:N:0:GTCCGC Contig9376 1062 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13751:24287_1:N:0:GTCCGC Contig99487 1494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11538:24672_1:N:0:GTCCGC Contig573636 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8601:27111_1:N:0:GTCCGC Contig655851 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8915:27626_1:N:0:GTCCGC Contig186996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6888:27948_1:N:0:GTCCGC Contig37026 12202 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18879:28880_1:N:0:GTCCGC Contig120695 2186 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18333:29886_1:N:0:GTCCGC Contig6878 3121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16029:30101_1:N:0:GTCCGC Contig577012 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6384:30680_1:N:0:GTCCGC Contig341947 694 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15871:30730_1:N:0:GTCCGC Contig462357 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5501:30866_1:N:0:GTCCGC Contig323873 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2155:34426_1:N:0:GTCCGC Contig695027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18178:35092_1:N:0:GTCCGC Contig505463 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19402:35478_1:N:0:GTCCGC Contig173161 392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3713:36408_1:N:0:GTCCGC Contig52530 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11569:36317_1:N:0:GTCCGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14803:36253_1:N:0:GTCCGC Contig234046 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17625:36652_1:Y:0:GTCCGC Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16693:40606_1:N:0:GTCCGC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17059:43771_1:N:0:GTCCGC Contig51471 15982 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6275:44156_1:N:0:GTCCGC Contig543587 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17771:46766_1:N:0:GTCCGC Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12799:47094_1:N:0:GTCCGC Contig580816 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11888:49074_1:N:0:GTCCGC Contig571751 6343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12048:50064_1:N:0:GTCCGC Contig306106 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:21164:50737_1:N:0:GTCCGC Contig279822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18938:51847_1:N:0:GTCCGC Contig146201 2559 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14009:54682_1:N:0:GTCCGC Contig16826 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1780:58264_1:N:0:GTCCGC Contig87945 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18044:58893_1:N:0:GTCCGC Contig167723 9214 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4841:59858_1:Y:0:GTCCGC Contig92440 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17578:61067_1:N:0:GTCCGC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9968:61946_1:N:0:GTCCGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18771:62517_1:N:0:GTCCGC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8496:63106_1:N:0:GTCCGC Contig77186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11083:67177_1:N:0:GTCCGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17096:68106_1:N:0:GTCCGC Contig663477 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18357:68389_1:N:0:GTCCGC Contig348752 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18958:68311_1:N:0:GTCCGC Contig143855 2495 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6906:69303_1:N:0:GTCCGC Contig164256 456 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2794:69509_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16715:69520_1:N:0:GTCCGC Contig21480 11700 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14314:70076_1:N:0:GTCCGC Contig390868 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13647:70429_1:N:0:GTCCGC Contig61918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15165:72480_1:N:0:GTCCGC Contig526193 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2899:72820_1:N:0:GTCCGC Contig201334 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9002:73087_1:N:0:GTCCGC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2317:74842_1:N:0:GTCCGC Contig286090 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4356:74871_1:Y:0:GTCCGC Contig580816 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11772:75248_1:N:0:GTCCGC Contig287979 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:21154:76075_1:N:0:GTCCGC Contig75355 2656 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19032:77186_1:Y:0:GTCCGC Contig454105 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13761:77323_1:N:0:GTCCGC Contig276556 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17569:80566_1:N:0:GTCCGC Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14678:81730_1:N:0:GTCCGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15729:81893_1:N:0:GTCCGC Contig340988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13553:82150_1:N:0:GTCCGC Contig671046 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3889:84332_1:Y:0:GTCCGC Contig216348 718 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10801:84323_1:N:0:GTCCGC Contig224935 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16411:84974_1:N:0:GTCCGC Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17880:85060_1:N:0:GTCCGC Contig587005 80 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 627978 (62.80%) aligned 0 times 131252 (13.13%) aligned exactly 1 time 240770 (24.08%) aligned >1 times 37.20% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 626764 (62.68%) aligned 0 times 130962 (13.10%) aligned exactly 1 time 242274 (24.23%) aligned >1 times 37.32% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 678722 (67.87%) aligned 0 times 122699 (12.27%) aligned exactly 1 time 198579 (19.86%) aligned >1 times 32.13% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 676498 (67.65%) aligned 0 times 123480 (12.35%) aligned exactly 1 time 200022 (20.00%) aligned >1 times 32.35% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_17_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_17_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 324236 Mapping efficiency: 32.4% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2014004 Total methylated C's in CpG context: 328054 Total methylated C's in CHG context: 8777 Total methylated C's in CHH context: 98157 Total methylated C's in Unknown context: 57 Total unmethylated C's in CpG context: 50630 Total unmethylated C's in CHG context: 428071 Total unmethylated C's in CHH context: 1100315 Total unmethylated C's in Unknown context: 398 C methylated in CpG context: 86.6% C methylated in CHG context: 2.0% C methylated in CHH context: 8.2% C methylated in Unknown context (CN or CHN): 12.5% Bismark completed in 0d 5h 26m 59s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_18_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_18_s456_trimmed.fq.gz to zr1394_18_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_18_s456_trimmed.fq.gz to zr1394_18_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_18_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_18_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_18_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_18_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1154:2201_1:N:0:GTGAAA 4 * 0 0 * * 0 0 ATAGTAGGTTAGTTAGTTGAGTTATGTT FFFBFFB/<>> Writing bisulfite mapping results to zr1394_18_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_18_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7169:2165_1:N:0:GTGAAA Contig66689 12385 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12665:3453_1:N:0:GTGAAA Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5682:4593_1:N:0:GTGAAA Contig178677 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3264:4773_1:Y:0:GTGAAA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9287:5320_1:N:0:GTGAAA Contig46310 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8292:6772_1:N:0:GTGAAA Contig99487 1494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9988:7023_1:N:0:GTGAAA Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11835:7866_1:N:0:GTGAAA Contig385586 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9159:8617_1:N:0:GTGAAA Contig102259 1701 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10822:8651_1:N:0:GTGAAA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19775:9106_1:N:0:GTGAAA Contig202150 570 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17620:9552_1:N:0:GTGAAA Contig6158 2031 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3865:10579_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8836:11128_1:N:0:GTGAAA Contig422166 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2238:11479_1:N:0:GTGAAA Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4017:11881_1:N:0:GTGAAA Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8915:12882_1:Y:0:GTGAAA Contig525149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4862:18898_1:Y:0:ATGAAA Contig305242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13788:20603_1:N:0:GTGAAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14410:20954_1:Y:0:GTTAAA Contig218015 418 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4642:21566_1:N:0:GTGAAA Contig447977 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2671:21962_1:N:0:GTGAAA Contig76998 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10630:23068_1:N:0:GTGAAA Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20638:23063_1:N:0:GTGAAA Contig15508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16753:23907_1:N:0:GTGAAA Contig460111 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14650:26417_1:N:0:GTGAAA Contig58165 2667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12165:27143_1:N:0:GTGAAA Contig37754 23190 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14483:29060_1:N:0:GTGAAA Contig624794 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10265:29553_1:N:0:GTGAAA Contig687650 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18053:32293_1:N:0:GTGAAA Contig20782 5858 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18029:33193_1:N:0:GTGAAA Contig549601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2152:34712_1:N:0:GTGAAA Contig11322 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13737:35736_1:N:0:GTGAAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8004:36495_1:N:0:GTGAAA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16268:36304_1:N:0:GTGAAA Contig111828 1369 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13683:37136_1:N:0:GTGAAA Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4027:37678_1:N:0:GTGAAA Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12627:38585_1:N:0:GTGAAA Contig133837 849 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15671:38697_1:N:0:GTGAAA Contig125269 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6689:39698_1:N:0:GTGAAA Contig481198 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4210:40610_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6040:41286_1:N:0:GTGAAA Contig250965 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12186:43075_1:Y:0:GTGAAA Contig362797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8266:45054_1:N:0:GTGAAA Contig109565 864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14836:47677_1:N:0:GTGAAA Contig436033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14277:48401_1:N:0:GTGAAA Contig11790 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12167:48514_1:N:0:GTGAAA Contig186816 494 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4042:48791_1:N:0:GTGAAA Contig552621 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6084:50025_1:N:0:GTGAAA Contig235100 511 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3478:50817_1:Y:0:GTGAAA Contig5051 9733 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16946:51633_1:N:0:GTGAAA Contig358108 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17729:51505_1:N:0:GTGAAA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6300:53390_1:N:0:GTGAAA Contig619707 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1437:53682_1:N:0:GTGAAA Contig252974 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10199:54710_1:N:0:GTGAAA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9630:55344_1:N:0:GTGAAA Contig473025 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4219:56337_1:N:0:GTGAAA Contig36991 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5419:56963_1:N:0:GTGAAA Contig58853 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18495:57233_1:N:0:GTGAAA Contig113337 798 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17969:57465_1:N:0:GTGAAA Contig87621 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13300:57826_1:N:0:GTGAAA Contig33174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1756:58830_1:N:0:GTGAAA Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9094:59523_1:N:0:GTGAAA Contig145646 2008 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13315:59868_1:N:0:GTGAAA Contig464095 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7787:60434_1:N:0:GTGAAA Contig57360 6454 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1519:60927_1:N:0:GTGAAA Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13173:60898_1:N:0:GTGAAA Contig141460 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6749:61029_1:N:0:GTGAAA Contig394412 414 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20798:61959_1:N:0:GTGAAA Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11790:62499_1:N:0:GTGAAA Contig215364 440 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19222:62582_1:Y:0:GTGAAA Contig362597 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6360:63258_1:N:0:GTGAAA Contig304315 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10612:63384_1:N:0:GTGAAA Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20792:63336_1:N:0:ATGAAA Contig620751 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10268:63939_1:N:0:GTGAAA Contig316976 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18941:64405_1:N:0:GTGAAA Contig1218 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14322:65566_1:N:0:GTGAAA Contig356284 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15562:66685_1:N:0:GTGAAA Contig49687 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10852:67581_1:N:0:GTGAAA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11639:67639_1:N:0:GTGAAA Contig508916 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15884:68520_1:Y:0:GTGAAA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3594:69155_1:N:0:GTGAAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4739:69402_1:N:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15180:70149_1:N:0:GTGAAA Contig120129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12693:71042_1:N:0:GTGAAA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4528:71835_1:N:0:GTGAAA Contig381780 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8312:76759_1:N:0:GTGAAA Contig115297 581 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9766:77416_1:N:0:GTGAAA Contig94894 1597 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3903:78094_1:N:0:GTGAAA Contig22047 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18201:78395_1:N:0:GTGAAA Contig311635 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17504:79321_1:Y:0:GTGAAA Contig392574 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13408:79689_1:Y:0:GTGAAA Contig88381 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5772:80595_1:N:0:GTGAAA Contig185232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5737:81545_1:N:0:GTGAAA Contig490202 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14819:82973_1:N:0:GTGAAA Contig435809 336 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9794:83394_1:N:0:GTGAAA Contig69829 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9801:83738_1:N:0:GTGAAA Contig22119 4006 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13436:84779_1:Y:0:GTGAAA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16188:85539_1:N:0:GTGAAA Contig440925 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18573:85751_1:N:0:GTGAAA Contig337810 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6437:86203_1:N:0:ATGAAA Contig247172 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19983:86631_1:N:0:GTGAAA Contig21451 5160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19602:88968_1:N:0:GTGAAA Contig152949 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13052:90518_1:N:0:GTGAAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5209:91050_1:N:0:GTGAAA Contig467912 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10383:91015_1:N:0:GTGAAA Contig523999 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16641:91433_1:N:0:GTGAAA Contig111306 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16311:92966_1:N:0:GTGAAA Contig687242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13019:93416_1:N:0:GTGAAA Contig24949 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14319:94139_1:N:0:GTGAAA Contig452265 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18851:94092_1:Y:0:GTGAAA Contig387861 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2312:95481_1:N:0:GTGAAA Contig460779 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10762:95521_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7601:95918_1:N:0:GTGAAA Contig18116 4012 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17530:96564_1:N:0:GTGAAA Contig238327 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18531:98880_1:N:0:GTGAAA Contig223261 1606 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19943:99191_1:N:0:GTGAAA Contig1803 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15401:99694_1:N:0:GTGAAA Contig263737 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6058:2313_1:N:0:GTGAAA Contig530797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2217:3201_1:N:0:GTGAAA Contig480270 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12158:3753_1:N:0:GTGAAA Contig551970 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8667:4717_1:N:0:GTGAAA Contig167634 6560 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19797:4734_1:Y:0:GTGATA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4114:4762_1:N:0:GTGAAA Contig676430 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20757:4763_1:N:0:GTGAAA Contig393387 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13937:5322_1:N:0:GTGAAA Contig114294 1330 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1821:9652_1:N:0:GTGAAA Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4470:10739_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20180:11591_1:N:0:ATGAAA Contig410637 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12887:11916_1:N:0:GTGAAA Contig561203 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15109:14489_1:N:0:GTGAAA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8983:16289_1:N:0:GTGAAA Contig435809 337 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1671:16575_1:N:0:GTGAAA Contig668152 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13900:17364_1:N:0:GTGAAA Contig76256 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12295:18258_1:N:0:GTGAAA Contig12116 740 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10143:19289_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8641:19564_1:N:0:GTGAAA Contig538429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13095:19593_1:N:0:GTGAAA Contig30655 1640 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2883:21003_1:N:0:GTGAAA Contig175537 2146 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6392:21083_1:N:0:GTGAAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9086:21001_1:N:0:GTGAAA Contig19371 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12741:23069_1:N:0:GTGAAA Contig416854 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14214:25115_1:N:0:GTGAAA Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17017:25771_1:N:0:GTGAAA Contig672538 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15815:27828_1:N:0:GTGAAA Contig96738 1297 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8490:28622_1:N:0:GTGAAA Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3586:28946_1:N:0:GTGAAA Contig222913 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13783:29569_1:N:0:GTGAAA Contig459518 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3165:29863_1:N:0:GTGAAA Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3361:31121_1:N:0:GTGAAA Contig411545 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19407:31011_1:N:0:GTGAAA Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10835:31420_1:N:0:GTGAAA Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20199:31921_1:N:0:GTGAAA Contig270022 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15866:32556_1:N:0:GTGAAA Contig212916 1242 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8076:32930_1:N:0:GTGAAA Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1827:34182_1:N:0:GTGAAA Contig680052 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19010:36749_1:N:0:GTGAAA Contig463939 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9479:36832_1:N:0:GTGAAA Contig601866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4798:37388_1:N:0:GTGAAA Contig112081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8149:37409_1:N:0:GTGAAA Contig184241 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14386:38748_1:Y:0:GTGCAA Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12874:39061_1:N:0:GTGAAA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12903:39353_1:N:0:GTGAAT Contig121986 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9430:39895_1:N:0:GTGAAA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6862:42080_1:N:0:GTGAAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10976:42342_1:N:0:GTGAAA Contig373353 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8693:44874_1:N:0:GTGAAA Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4683:45686_1:N:0:GTGAAA Contig639696 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14801:46371_1:N:0:GTGAAA Contig206975 348 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9408:46942_1:N:0:GTGAAA Contig282901 1395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17074:48577_1:N:0:GTGAAA Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11580:49363_1:N:0:GTGAAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2841:49955_1:N:0:GTGAAA Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10990:51126_1:N:0:GTGAAA Contig224935 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7398:51949_1:N:0:GTGAAA Contig18275 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15415:52222_1:Y:0:GTGAAA Contig221585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16286:52077_1:N:0:GTGAAA Contig469460 252 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10696:53396_1:N:0:GTGAAA Contig282901 1395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12115:53460_1:N:0:GTGAAA Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5309:54468_1:N:0:GTGAAA Contig16985 786 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15520:57349_1:N:0:GTGAAA Contig189370 708 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9628:57517_1:N:0:GTGAAA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3677:58579_1:N:0:GTGAAA Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4968:58733_1:N:0:GTGAAA Contig11068 1004 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8548:59744_1:N:0:GTGAAA Contig34553 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10237:60023_1:N:0:GTGAAA Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9314:61818_1:N:0:GTGAAA Contig306994 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17890:62392_1:N:0:GTGAAA Contig204098 6508 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20735:62501_1:N:0:GTGAAA Contig578693 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18501:63430_1:Y:0:GTGAAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10065:63597_1:N:0:GTGAAA Contig417218 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17323:63745_1:N:0:GTGAAA Contig358687 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10563:63791_1:Y:0:GTGAAA Contig86903 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6129:64919_1:N:0:GTGAAT Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2100:65951_1:N:0:GTGAAA Contig310256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3903:65828_1:N:0:GTGAAA Contig487247 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7218:66797_1:N:0:GTGAAA Contig321660 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5736:67463_1:N:0:GTGAAA Contig661832 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7049:67314_1:N:0:GTGAAA Contig228914 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19107:67499_1:N:0:GTGAAA Contig390624 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5305:67575_1:N:0:GTGAAA Contig90138 12436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15834:67616_1:N:0:GTGAAA Contig63182 2216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2698:68549_1:N:0:GTGAAA Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18054:70449_1:N:0:GTGAAA Contig572077 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4339:71045_1:N:0:GTGAAA Contig658971 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15820:71148_1:N:0:GTGAAA Contig20442 18468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7937:72162_1:N:0:GTGAAA Contig396101 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13356:72250_1:N:0:GTGAAA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5762:72419_1:N:0:GTGAAA Contig157341 948 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4617:74738_1:N:0:GTGAAA Contig467912 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18045:77966_1:N:0:GTGAAA Contig57612 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4850:78324_1:N:0:GTGAAA Contig294468 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5913:80656_1:N:0:GTGAAA Contig575772 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8179:83526_1:N:0:GTGAAA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14796:83553_1:N:0:GTGAAA Contig378027 612 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15413:84482_1:N:0:GTGAAA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5699:85367_1:N:0:GTGAAA Contig216978 968 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10247:85369_1:N:0:GTGAAA Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11839:85855_1:N:0:ATGAAA Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1724:87903_1:N:0:GTGAAA Contig256669 153 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8514:91434_1:N:0:GTGAAA Contig426118 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16142:91365_1:N:0:GTGAAA Contig48797 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10236:91656_1:N:0:GTGAAA Contig153941 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17071:91730_1:N:0:GTGAAA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3923:91936_1:N:0:GTGAAA Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13208:91854_1:N:0:GTGAAA Contig12929 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7773:92308_1:N:0:GTGAAA Contig551970 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10826:92252_1:N:0:GTGAAA Contig10550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12126:92352_1:N:0:GTGAAA Contig445879 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14778:93293_1:N:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4392:94251_1:Y:0:GTGAAA Contig207795 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12574:94458_1:N:0:GTGAAA Contig21508 55869 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10641:96958_1:N:0:GTGAAA Contig143072 492 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12963:96789_1:N:0:GTGAAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12263:97135_1:N:0:GTGAAA Contig451400 215 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8307:97710_1:Y:0:GTGAAA Contig522498 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6644:97782_1:N:0:GTGAAA Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4657:98550_1:N:0:GTGAAA Contig222262 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13133:99214_1:N:0:GTGAAA Contig323946 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17389:99001_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8931:100089_1:N:0:GTGAAA Contig179595 459 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4301:2968_1:N:0:GTGAAA Contig31926 12932 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16838:4107_1:N:0:GTGAAA Contig3643 21025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9684:6223_1:N:0:GTGAAA Contig661824 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10651:7033_1:N:0:GTGAAA Contig185745 4657 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19856:7959_1:N:0:GTGAAA Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2060:8137_1:N:0:GTGAAA Contig446332 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14117:9254_1:N:0:GTGAAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7677:9941_1:N:0:GTGAAA Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5918:12467_1:N:0:GTGAAA Contig675159 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9068:13058_1:N:0:GTGAAA Contig274027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16669:13713_1:N:0:GTGAAA Contig6545 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8335:14573_1:N:0:GTGAAA Contig40440 1950 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4447:14854_1:N:0:GTGAAA Contig112006 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7174:15099_1:N:0:GTGAAA Contig19163 16952 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6638:16684_1:N:0:GTGAAA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19500:16567_1:N:0:GTGAAA Contig470947 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3174:17196_1:N:0:GTAAAA Contig14880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1942:17586_1:N:0:GTGAAA Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6393:17653_1:N:0:GTGAAA Contig16654 11634 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13951:19118_1:N:0:GTGAAA Contig466478 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1118:19653_1:N:0:GTGAAA Contig17145 266 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9181:19684_1:N:0:GTGAAA Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8929:20194_1:N:0:GTGAAA Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18570:20699_1:N:0:GTGAAA Contig351897 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4098:20820_1:N:0:GTGAAA Contig410577 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14675:20870_1:N:0:GTGAAA Contig14748 196 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7051:22787_1:N:0:GTGAAA Contig92500 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13830:23490_1:N:0:GTGAAA Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20370:25260_1:Y:0:GTGAAA Contig181318 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5877:25758_1:N:0:GTGAAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9664:27263_1:N:0:GTGAAA Contig356772 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10233:27250_1:N:0:GTGAAA Contig174710 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8273:27911_1:N:0:GTGAAA Contig119588 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3361:28122_1:Y:0:GTGAAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12999:28184_1:N:0:GTGAAA Contig694081 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15715:29284_1:N:0:GTGAAA Contig52515 24347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4566:29599_1:N:0:GTGAAA Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9600:29618_1:N:0:GTGAAA Contig55603 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16487:29628_1:Y:0:GTGAAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8415:30998_1:N:0:GTGAAA Contig351314 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20521:30942_1:N:0:GTGAAA Contig125259 1318 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5521:32103_1:N:0:GTGAAA Contig155798 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5968:32794_1:N:0:ATGAAA Contig112557 867 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13945:32753_1:N:0:GTGAAA Contig583592 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4953:36812_1:N:0:GTGAAA Contig181318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15800:36798_1:N:0:GTGAAA Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6885:38429_1:N:0:GTGAAA Contig125243 1014 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20982:39019_1:N:0:GTGAAA Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13037:39489_1:N:0:GTGAAA Contig185430 450 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18589:39443_1:N:0:GTGAAA Contig403633 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7534:39733_1:N:0:GTGAAA Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20747:41456_1:N:0:GTGAAA Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9970:41577_1:N:0:ATGAAA Contig375324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18356:43008_1:N:0:GTGAAA Contig269705 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2597:43755_1:N:0:GTGAAA Contig73426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3920:44679_1:N:0:GTGAAA Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7886:44719_1:N:0:GTGAAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10076:45508_1:N:0:GTGAAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3980:45804_1:Y:0:GTGAAA Contig643484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16562:45751_1:N:0:GTGAAA Contig104430 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15343:46189_1:N:0:GTGAAA Contig474507 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20438:47135_1:Y:0:GTGAAA Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7745:48345_1:N:0:GTGAAA Contig9300 1861 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3147:48787_1:N:0:GTGAAA Contig63248 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15936:49846_1:N:0:TTGAAA Contig447497 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13524:50977_1:N:0:GTGAAA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16910:51499_1:N:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19392:52199_1:Y:0:GTGAAA Contig73895 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17939:54815_1:N:0:GTGAAA Contig148785 909 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6698:55911_1:N:0:GTGAAA Contig212938 1395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14205:59822_1:N:0:GTGAAA Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16861:61302_1:N:0:GTGAAA Contig208562 702 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14159:63003_1:N:0:GTGAAA Contig426123 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19623:64204_1:N:0:GTGAAA Contig606859 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7797:67018_1:N:0:GTGAAA Contig48049 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12384:68413_1:N:0:GTGAAA Contig81775 1029 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13757:71864_1:N:0:GTGAAA Contig438851 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19268:72138_1:N:0:GTGAAA Contig605961 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7039:73331_1:N:0:GTGAAA Contig399618 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8247:80626_1:N:0:GTGAAA Contig434822 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13832:80990_1:N:0:GTGAAA Contig535269 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10753:82373_1:N:0:GTGAAA Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7111:82512_1:N:0:GTGAAA Contig619707 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7930:83625_1:N:0:GTGAAA Contig577461 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15918:84924_1:N:0:GTGAAA Contig637869 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13885:86186_1:N:0:GTGAAA Contig348762 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7363:86309_1:N:0:GTGAAA Contig50451 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16884:86518_1:Y:0:GTGAAA Contig137702 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16713:87564_1:N:0:GTGAAA Contig17012 18970 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14452:87813_1:N:0:GTGAAA Contig50928 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5066:88058_1:N:0:GTGAAA Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17975:90036_1:N:0:GTGAAA Contig627539 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10166:91135_1:N:0:GTGAAA Contig531891 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9749:91453_1:N:0:GTGAAA Contig262974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12969:91597_1:N:0:GTGAAA Contig145393 10039 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6557:92369_1:N:0:GTGAAA Contig472032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20790:92755_1:N:0:GTGAAA Contig68221 4661 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9692:93004_1:N:0:GTGAAA Contig607440 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14481:94587_1:N:0:GTGAAA Contig206702 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17945:94564_1:N:0:GTGAAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21318:96350_1:Y:0:GTGAAA Contig196924 963 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6668:96627_1:N:0:GTGAAA Contig181265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17916:97072_1:N:0:GTGAAA Contig120979 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18545:97139_1:N:0:GTGAAA Contig499830 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12044:97675_1:N:0:GTGAAA Contig219109 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18365:97932_1:N:0:GTGAAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2150:99313_1:N:0:GTGAAA Contig181963 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3624:99544_1:N:0:GTGAAA Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7611:99674_1:N:0:GTGAAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4302:99996_1:N:0:GTGAAA Contig220374 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8576:2187_1:N:0:GTGAAA Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7015:2872_1:N:0:GTGAAA Contig100320 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18072:2774_1:N:0:GTGAAA Contig362768 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15104:3030_1:N:0:GTGAAA Contig59928 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11601:3511_1:N:0:GTGAAA Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5873:4050_1:N:0:GTGAAA Contig450058 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7677:4056_1:N:0:GTGAAA Contig329744 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11090:5342_1:N:0:GTGAAA Contig350168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9291:5972_1:Y:0:GTGAAT Contig522805 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17460:7323_1:N:0:GTGAAA Contig86685 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19748:8638_1:N:0:GTGAAA Contig494837 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4212:9674_1:N:0:GTGAAA Contig660346 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18143:10297_1:N:0:GTGAAA Contig687180 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5472:10571_1:N:0:GTGAAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6498:10604_1:Y:0:GTGAAA Contig306023 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3926:11061_1:N:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12281:11134_1:N:0:GTGAAA Contig113596 2568 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13462:12091_1:N:0:GTGAAA Contig380031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13641:12782_1:N:0:GTGAAA Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12473:13226_1:N:0:GTGAAA Contig217962 788 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14962:13663_1:N:0:GTGAAA Contig20759 19586 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16651:14280_1:N:0:GTGAAA Contig199175 714 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18167:15373_1:N:0:GTGAAA Contig58165 2668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16109:15577_1:N:0:GTGAAA Contig514507 8040 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14932:16932_1:N:0:GTGAAA Contig69363 2720 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11082:18789_1:N:0:GTGAAA Contig17722 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13688:19958_1:N:0:GTGAAA Contig686765 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12698:20087_1:N:0:GTGAAA Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20818:20077_1:N:0:GTGAAA Contig321109 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4348:20465_1:N:0:GTGAAA Contig87582 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7868:20673_1:N:0:ATGAAA Contig115061 4198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15229:24931_1:N:0:GTGAAA Contig164256 455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3175:28181_1:Y:0:GTGAAA Contig206599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6401:28460_1:N:0:GTGAAA Contig670900 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6873:29535_1:N:0:GTGAAA Contig498518 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16548:30451_1:Y:0:GTGAAA Contig109565 864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9965:30617_1:N:0:GTGAAA Contig79341 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16402:31121_1:N:0:GTGAAA Contig62878 17450 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8681:32269_1:N:0:GTGAAA Contig452511 2991 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5523:33522_1:N:0:GTGAAA Contig688716 141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12746:34149_1:N:0:GTGAAA Contig135069 6038 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4117:34394_1:N:0:GTGAAA Contig673759 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15495:34625_1:N:0:GTGAAA Contig49419 2121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19155:34851_1:N:0:GTGAAA Contig250225 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4803:35737_1:N:0:GTGAAA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3027:37837_1:N:0:GTGAAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11230:38312_1:N:0:GTAAAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12401:39496_1:N:0:GTGAAA Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17129:39421_1:N:0:GTGAAA Contig44354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14973:41950_1:N:0:GTGAAA Contig434377 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14477:43055_1:N:0:GTGAAA Contig605656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11822:43276_1:N:0:GTGAAA Contig109913 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10947:44688_1:N:0:GTGAAA Contig191456 530 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13240:45958_1:N:0:GTGAAA Contig642118 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8615:46596_1:N:0:GTGAAA Contig665043 421 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10976:46533_1:N:0:GTGAAA Contig16979 528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18945:46658_1:N:0:GTGAAG Contig662113 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5684:46827_1:N:0:GTGAAA Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14635:47036_1:N:0:GTGAAA Contig401995 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12279:48300_1:N:0:GTGAAA Contig273958 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14236:48417_1:N:0:GTGAAA Contig577033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6874:48887_1:N:0:GTGAAA Contig632659 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11580:48796_1:N:0:GTGAAA Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5287:49119_1:N:0:GTGAAA Contig233955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16088:49579_1:N:0:GTGAAA Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6070:51492_1:Y:0:GTGAAA Contig438479 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5682:52088_1:N:0:GTGAAA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10500:52334_1:N:0:ATGAAA Contig663477 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11266:52708_1:N:0:GTGAAA Contig145414 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8194:53341_1:N:0:GTGAAA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17679:54368_1:N:0:GTGAAA Contig131403 1362 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5148:55787_1:N:0:GTGAAA Contig403272 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13313:55979_1:N:0:GTGAAA Contig656541 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7851:56539_1:N:0:GTGAAA Contig218822 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15975:56570_1:N:0:GTGAAA Contig662634 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4638:56872_1:N:0:GTGAAA Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4985:57301_1:N:0:GTGAAT Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9679:57674_1:N:0:GTGAAA Contig661445 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21209:58473_1:N:0:GTGAAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9794:61149_1:N:0:GTGAAA Contig487887 330 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10761:62649_1:N:0:GTGAAA Contig685255 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4141:63500_1:N:0:GTGAAA Contig604884 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17689:64561_1:N:0:GTGAAA Contig7844 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20484:67957_1:N:0:GTGAAA Contig650086 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19064:68405_1:N:0:GTGAAA Contig675288 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17246:68910_1:N:0:GTGAAA Contig27775 1477 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5001:70085_1:N:0:GTGAAA Contig125432 6825 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19538:70107_1:N:0:GTGAAA Contig596500 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7090:70656_1:N:0:GTGAAA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9529:71914_1:N:0:GTGAAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8018:72303_1:N:0:GTGAAA Contig522741 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3647:72732_1:N:0:GTGAAA Contig19800 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4049:72695_1:N:0:GTGAAA Contig74916 7868 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16119:74297_1:N:0:GTGAAA Contig677917 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2618:74884_1:N:0:GTGAAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10256:75025_1:N:0:GTGAAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11377:75311_1:N:0:GTGAAA Contig92402 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17718:75303_1:Y:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2511:76486_1:Y:0:GTGAAA Contig57595 26637 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3805:76330_1:N:0:GTGAAA Contig649947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5777:76322_1:N:0:GTGAAA Contig610722 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8733:78189_1:N:0:GTGAAA Contig269788 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8049:78558_1:N:0:GTGAAA Contig198796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16189:79386_1:N:0:GTGAAA Contig4498 13842 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12619:80623_1:N:0:GTGAAA Contig465244 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16242:80779_1:N:0:GTGAAA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8859:81931_1:N:0:GTAAAA Contig406963 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7429:83247_1:N:0:GTGAAA Contig557812 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17242:84854_1:N:0:GTGAAA Contig39041 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6077:85913_1:Y:0:GTGAAA Contig242743 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14647:86242_1:N:0:GTGAAA Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9764:88443_1:N:0:GTGAAA Contig259567 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20600:88480_1:N:0:GTGAAA Contig63056 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3509:89389_1:N:0:GTGAAA Contig449421 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19050:89483_1:N:0:GTGAAA Contig21802 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2272:90019_1:N:0:GTGAAA Contig693464 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8062:90374_1:N:0:GTGAAA Contig188179 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9530:91336_1:N:0:GTGAAA Contig60042 4732 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8734:92883_1:N:0:GTGAAA Contig69829 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6734:93474_1:N:0:GTGAAA Contig176386 464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20211:93721_1:N:0:GTGAAA Contig668901 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14384:94663_1:N:0:GTGAAA Contig6878 3121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13968:94824_1:N:0:GTGAAA Contig200569 1650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16994:94922_1:N:0:GTGAAA Contig646552 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19945:95447_1:N:0:GTGAAA Contig375324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12723:98249_1:N:0:GTGAAA Contig61635 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12569:98979_1:N:0:GTGAAA Contig166416 644 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9462:99025_1:N:0:GTGAAA Contig116318 1707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4221:3813_1:N:0:GTGAAA Contig503575 242 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17291:4344_1:N:0:GTGAAA Contig613361 229 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16620:5913_1:N:0:GTGAAA Contig367216 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15142:6772_1:N:0:GTGAAA Contig289793 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2471:8260_1:N:0:GTGAAA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9208:8283_1:Y:0:GTGAAA Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15793:9158_1:N:0:GTGAAA Contig167621 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4467:9539_1:N:0:GTGAAA Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6032:9567_1:N:0:GTGAAA Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2039:11832_1:N:0:GTGAAA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3285:12261_1:N:0:GTGAAA Contig413079 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18983:12581_1:N:0:GTGAAA Contig268594 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11807:13862_1:Y:0:GTGAAA Contig654316 146 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12767:14223_1:N:0:GTGAAA Contig483033 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18268:15027_1:N:0:GTGAAA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7851:15969_1:N:0:GTGAAA Contig422229 146 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9029:16192_1:N:0:ATGAAA Contig371485 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10823:16661_1:N:0:GTGAAA Contig492047 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3303:17300_1:N:0:GTGAAA Contig69591 6015 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2970:18346_1:Y:0:GTGAAA Contig124150 266 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4538:19634_1:N:0:GTGAAA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16828:20148_1:N:0:GTGAAA Contig576619 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15871:21120_1:N:0:GTGAAA Contig277040 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10614:21432_1:N:0:GTGAAA Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2997:21767_1:N:0:GTGAAA Contig456860 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20561:22059_1:N:0:GTGAAA Contig149870 1443 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18100:23846_1:N:0:GTGAAA Contig616376 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4531:24402_1:N:0:GTGAAA Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17522:24398_1:Y:0:GTGAAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14271:26370_1:N:0:GTGAAA Contig590424 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17302:26284_1:N:0:GTGAAA Contig493459 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3757:26500_1:N:0:GTGAAA Contig600455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17909:26677_1:N:0:GTGAAA Contig522741 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17306:26984_1:N:0:GTGAAA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8396:27972_1:N:0:GTGAAA Contig182234 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20344:28198_1:N:0:GTGAAA Contig78425 9817 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20219:29619_1:N:0:GTGAAA Contig291086 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19109:30545_1:N:0:GTGAAA Contig48146 10269 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16518:30985_1:N:0:GTGAAA Contig462834 273 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2852:31812_1:N:0:GTGAAA Contig6830 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17069:32916_1:N:0:GTGAAA Contig566755 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17612:32755_1:N:0:GTGAAA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10392:33138_1:N:0:GTGAAA Contig571751 6345 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15567:33243_1:N:0:GTGAAA Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20525:33056_1:N:0:GTGAAA Contig644399 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1934:34282_1:N:0:GTGAAA Contig548683 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10695:34892_1:N:0:GTGAAA Contig625286 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6721:35937_1:N:0:GTGAAA Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8980:35835_1:N:0:GTGAAA Contig228763 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12291:37200_1:N:0:GTGAAA Contig296716 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12758:37812_1:N:0:GTGAAA Contig438996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20693:38211_1:N:0:GTGAAA Contig564182 119 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2387:40237_1:N:0:GTGAAA Contig44163 29814 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5916:42270_1:N:0:GTGAAA Contig195991 1970 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14706:44643_1:N:0:GTGAAA Contig38042 3697 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5404:45348_1:N:0:GTGAAA Contig585302 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10097:46847_1:N:0:GTGAAA Contig649947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18392:49205_1:N:0:GTGAAA Contig581536 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17975:49649_1:N:0:GTGAAA Contig323383 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15213:50743_1:N:0:GTGAAA Contig171786 663 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16776:51205_1:N:0:GTGAAA Contig399368 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1952:51519_1:N:0:GTGAAA Contig189671 710 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4893:51883_1:N:0:GTGAAA Contig162211 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11290:53728_1:Y:0:GTGAAA Contig212938 1395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11069:53867_1:N:0:CTGAAA Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8133:54662_1:N:0:GTGAAA Contig356944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11151:55294_1:N:0:GTGAAA Contig79341 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8146:56460_1:N:0:GTGAAA Contig32147 14195 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20189:58249_1:N:0:GTGAAA Contig312699 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17766:61071_1:N:0:GTGAAA Contig201190 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3869:63008_1:N:0:GTGAAA Contig139755 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3499:63421_1:N:0:GTAAAA Contig28048 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16912:63570_1:N:0:GTGAAA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14596:63934_1:N:0:GTGAAA Contig638935 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11824:64488_1:N:0:GTGAAA Contig38042 3697 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6393:64794_1:N:0:GTGAAA Contig115061 4196 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5678:65179_1:N:0:GTGAAA Contig10173 505 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5790:65352_1:N:0:GTGAAA Contig206820 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16782:65941_1:N:0:GTGAAA Contig416040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17501:66382_1:N:0:GTGAAA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19675:67722_1:N:0:GTGAAA Contig644567 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16104:68571_1:Y:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12257:68909_1:N:0:GTGAAA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9679:69473_1:N:0:GTGAAA Contig687180 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10267:70060_1:N:0:GTGAAA Contig474092 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19013:70331_1:N:0:GTGAAA Contig322052 405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17469:70580_1:N:0:GTGAAA Contig556584 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19840:70551_1:N:0:GTGAAA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4756:71093_1:N:0:GTGAAA Contig143225 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11008:72404_1:N:0:GTGAAA Contig252713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2963:72995_1:N:0:GTGAAA Contig313770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1615:73124_1:N:0:GTGAAA Contig397090 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2456:73602_1:N:0:GTGAAA Contig161825 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20390:73818_1:N:0:GTGAAA Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5579:74285_1:N:0:GTGAAA Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14564:75044_1:N:0:GTGAAA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11197:75865_1:N:0:GTGAAA Contig101016 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13544:76217_1:N:0:GTGAAA Contig36630 41535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10533:76874_1:N:0:GTGAAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11221:77126_1:Y:0:GTTAAA Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10258:79354_1:N:0:GTGAAA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8221:79939_1:N:0:GTGAAA Contig47290 9617 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15412:82536_1:N:0:GTGAAA Contig651299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14359:83055_1:N:0:GTGAAA Contig105412 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7993:83694_1:N:0:GTGAAA Contig132511 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7006:84087_1:N:0:GTGAAA Contig572557 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4664:85154_1:N:0:GTGAAA Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14876:85765_1:N:0:GTGAAA Contig63457 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10957:87208_1:N:0:GTGAAA Contig504383 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20105:87436_1:N:0:GTGAAA Contig552823 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5796:88122_1:N:0:GTGAAA Contig50279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14074:88240_1:Y:0:GTGAAA Contig300866 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5911:88618_1:N:0:ATGAAA Contig600049 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18851:88938_1:N:0:GTGAAA Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4126:90764_1:N:0:GTGAAA Contig423128 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10617:91135_1:N:0:GTGAAA Contig642149 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9552:91515_1:N:0:GTGAAA Contig3384 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8098:92745_1:N:0:GTGAAA Contig172736 2128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18587:93677_1:N:0:GTGAAA Contig195892 1373 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12333:94201_1:N:0:GTGAAA Contig98284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10472:94905_1:Y:0:GTTAAA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13513:94797_1:N:0:GTGAAA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18472:95313_1:N:0:GTGAAA Contig80268 2728 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3431:96146_1:N:0:GTGAAA Contig402997 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13654:96444_1:N:0:GTGAAA Contig14819 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20127:96680_1:N:0:GTGAAA Contig433468 297 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6274:97229_1:N:0:GTGAAA Contig578043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16491:97087_1:N:0:GTGAAA Contig202178 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19778:97906_1:N:0:GTGAAA Contig72018 4863 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12610:98573_1:N:0:GTGAAA Contig233955 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20432:98599_1:N:0:GTGAAA Contig266398 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8438:2286_1:N:0:GTGAAA Contig335108 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8002:2896_1:N:0:GTGAAA Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14293:3313_1:N:0:GTAAAA Contig291360 193 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8383:3624_1:N:0:GTGAAA Contig211686 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12438:3563_1:N:0:GTGAAA Contig229906 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7946:4389_1:N:0:GTGAAA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18514:5555_1:N:0:GTGAAA Contig676313 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4082:6020_1:N:0:GTGAAA Contig517088 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13887:6163_1:N:0:GTGAAA Contig557232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4030:6490_1:N:0:GTGAAA Contig480636 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16085:6428_1:N:0:GTGAAA Contig119716 19448 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10974:7248_1:N:0:GTAAAA Contig197538 967 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20581:8330_1:N:0:GTGAAA Contig86873 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6973:9429_1:N:0:GTGAAA Contig53699 2305 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17616:9272_1:N:0:GTGAAA Contig639346 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13431:11039_1:N:0:GTGAAA Contig66028 7045 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17914:11227_1:N:0:GTGAAA Contig108435 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15170:12560_1:N:0:GTGAAA Contig147966 1345 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2592:12853_1:N:0:GTGAAA Contig209981 755 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17510:12817_1:N:0:GTGAAA Contig64083 16984 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8502:14311_1:N:0:GTGAAA Contig64114 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16347:14438_1:N:0:GTGAAA Contig28288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15397:14959_1:N:0:GTGAAA Contig161940 476 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17525:16075_1:N:0:GTGAAA Contig69589 3183 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10193:17681_1:N:0:GTGAAA Contig103487 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18649:17860_1:N:0:GTGAAA Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4800:18745_1:N:0:GTGAAA Contig588585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11306:23001_1:N:0:GTGAAA Contig234249 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5625:23549_1:N:0:GTGAAA Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1995:24168_1:N:0:GTGAAA Contig481198 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2369:24909_1:N:0:GTGAAA Contig29699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7181:25243_1:N:0:GTGAAA Contig440064 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12728:25269_1:N:0:GTGAAA Contig582114 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 682899 (68.29%) aligned 0 times 128833 (12.88%) aligned exactly 1 time 188268 (18.83%) aligned >1 times 31.71% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 682800 (68.28%) aligned 0 times 128185 (12.82%) aligned exactly 1 time 189015 (18.90%) aligned >1 times 31.72% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 617630 (61.76%) aligned 0 times 141196 (14.12%) aligned exactly 1 time 241174 (24.12%) aligned >1 times 38.24% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 616568 (61.66%) aligned 0 times 141731 (14.17%) aligned exactly 1 time 241701 (24.17%) aligned >1 times 38.34% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_18_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_18_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 348941 Mapping efficiency: 34.9% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2096162 Total methylated C's in CpG context: 272848 Total methylated C's in CHG context: 7950 Total methylated C's in CHH context: 99835 Total methylated C's in Unknown context: 55 Total unmethylated C's in CpG context: 53734 Total unmethylated C's in CHG context: 434377 Total unmethylated C's in CHH context: 1227418 Total unmethylated C's in Unknown context: 350 C methylated in CpG context: 83.5% C methylated in CHG context: 1.8% C methylated in CHH context: 7.5% C methylated in Unknown context (CN or CHN): 13.6% Bismark completed in 0d 5h 46m 34s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_1_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_1_s456_trimmed.fq.gz to zr1394_1_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_1_s456_trimmed.fq.gz to zr1394_1_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_1_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_1_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_1_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_1_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1447:2175_1:N:0:ATCACG 0 Contig166168_CT_converted 610 1 31M * 0 0 TAAAAAGATTAAAGTTTAAGATAGATAGATT FFFFFFFFFFFFFFFFFFFFBFFFFFFFB>> Writing bisulfite mapping results to zr1394_1_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_1_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6375:4289_1:N:0:ATCACG Contig107057 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13893:4322_1:N:0:ATCACG Contig36756 8461 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11562:5775_1:N:0:ATCACG Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5725:7901_1:Y:0:ATCACG Contig360627 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13511:8407_1:N:0:ATCACG Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5041:11457_1:N:0:ATCACG Contig418567 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14254:12510_1:N:0:ATCACG Contig114989 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9758:13707_1:Y:0:ATCACG Contig190822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20588:14391_1:N:0:ATCACG Contig642394 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8081:15155_1:N:0:ATCACG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14064:15087_1:N:0:ATCACG Contig609558 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6991:15519_1:N:0:ATCACG Contig592220 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12148:15998_1:Y:0:ATCACG Contig557232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10321:17061_1:N:0:ATCACG Contig398624 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2869:18270_1:N:0:ATCACG Contig39474 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4539:18453_1:N:0:ATCACG Contig192458 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6635:18644_1:N:0:ATCACG Contig220374 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13867:19582_1:N:0:ATCACG Contig394405 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10382:20489_1:N:0:ATCACG Contig320840 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1276:21632_1:N:0:ATCACG Contig285171 206 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14538:22921_1:N:0:ATCACG Contig429586 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1354:24212_1:N:0:ATCACG Contig567396 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2716:24655_1:N:0:ATCACG Contig552246 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19029:24792_1:Y:0:ATCACG Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9250:25418_1:N:0:ATCACG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5863:26530_1:Y:0:ATCACG Contig27922 26323 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11717:28960_1:N:0:ATCACG Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9346:30502_1:N:0:ATCACG Contig110139 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10543:31740_1:N:0:ATCACG Contig96628 1443 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5784:33123_1:N:0:ATCACG Contig54063 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6949:33289_1:N:0:GTCACG Contig253547 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13527:33665_1:N:0:ATCACG Contig10508 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1336:33839_1:N:0:ATCACG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5063:34932_1:N:0:ATCACG Contig367398 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10655:35443_1:N:0:ATCACG Contig21199 10062 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12476:35259_1:N:0:ATCACG Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7759:35855_1:N:0:ATCACG Contig174714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17529:35802_1:N:0:ATCACG Contig683486 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14977:36316_1:N:0:ATCACG Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15288:36284_1:N:0:ATCACG Contig25964 8820 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19447:36804_1:N:0:ATCACG Contig33096 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1271:42448_1:N:0:ATCACG Contig676288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14137:43369_1:Y:0:ATCACG Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8197:43553_1:N:0:ATCACG Contig212284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9586:43701_1:N:0:ATCACG Contig384481 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3568:45789_1:N:0:ATCACG Contig490629 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18893:45824_1:N:0:ATCACG Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17427:47988_1:N:0:ATCACG Contig428397 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12039:48774_1:N:0:ATCACG Contig215266 3131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19059:48876_1:N:0:ATCACG Contig217316 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7766:49584_1:N:0:ATCACG Contig98295 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5572:50752_1:N:0:ATCACG Contig141297 1423 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14761:51967_1:N:0:ATCACG Contig452291 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18291:52265_1:N:0:ATCACC Contig303313 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9642:53274_1:N:0:ATCACG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14303:53580_1:Y:0:ATCACG Contig510684 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7393:54037_1:N:0:ATCACG Contig25964 8822 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4986:54480_1:N:0:ATCACG Contig344247 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18670:54447_1:N:0:ATCACG Contig403272 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7385:55151_1:N:0:ATCACG Contig76372 4476 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14033:55220_1:N:0:ATCACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7157:57094_1:N:0:ATCACG Contig524752 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9564:57056_1:N:0:ATCACG Contig76603 19389 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16019:58381_1:N:0:ATCACG Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18374:58305_1:N:0:ATCACG Contig403649 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6838:58528_1:N:0:ATCACG Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4186:59485_1:N:0:ATCACG Contig869 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13761:60710_1:N:0:ATCACG Contig596096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2598:61271_1:N:0:ATCACG Contig382242 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9749:61401_1:N:0:ATCACG Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15694:61377_1:N:0:ATCACG Contig15444 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7053:62326_1:N:0:ATCACG Contig47942 280 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9850:62317_1:N:0:ATCACG Contig36268 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15360:62792_1:N:0:ATCACG Contig10691 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5345:63137_1:N:0:ATCACG Contig219894 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12990:64029_1:N:0:ATCACG Contig443256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18906:69302_1:N:0:ATCACG Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3720:69836_1:N:0:ATCACG Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11338:70468_1:N:0:ATCACG Contig617155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4803:70938_1:N:0:ATCACG Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14560:71072_1:N:0:GTCACG Contig558464 477 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17389:71003_1:N:0:ATCACG Contig474502 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13796:71604_1:N:0:ATCACG Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21281:73470_1:N:0:ATCACG Contig130553 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8376:73666_1:N:0:ATCACG Contig182001 805 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13355:74440_1:N:0:ATCACG Contig120129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1749:74575_1:N:0:ATCACG Contig27371 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17508:74652_1:N:0:ATCACG Contig14764 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11557:78966_1:N:0:ATCACG Contig529723 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11886:79329_1:N:0:ATCACG Contig126788 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5733:79628_1:N:0:ATCACG Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3285:80376_1:N:0:ATCACG Contig159228 2646 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14173:80331_1:N:0:ATCACG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20870:80715_1:N:0:ATCACG Contig83227 6506 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19300:81623_1:N:0:ATCACG Contig644478 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3787:84621_1:N:0:ATCACG Contig581536 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13976:84729_1:N:0:ATCACG Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2699:85317_1:N:0:ATCACG Contig2939 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14979:86255_1:N:0:ATCACG Contig329075 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8604:87493_1:N:0:ATCACG Contig576764 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11984:87401_1:N:0:ATCACG Contig198843 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12993:87252_1:Y:0:ATCACG Contig426342 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17038:87676_1:N:0:ATCACG Contig30655 1640 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4237:89365_1:N:0:ATCACG Contig383596 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5112:89783_1:N:0:ATCACG Contig594090 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5436:90446_1:N:0:ATCACG Contig139084 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12977:90980_1:N:0:ATCACG Contig423799 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14219:91041_1:N:0:ATCACG Contig191785 894 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2606:91931_1:N:0:ATCACG Contig683893 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15916:93878_1:N:0:ATCACG Contig546798 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17474:93985_1:N:0:ATCACG Contig380031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15409:95725_1:N:0:ATCACG Contig444749 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15340:95849_1:N:0:ATCACG Contig424478 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7066:96095_1:N:0:ATCACA Contig12339 57 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21311:96715_1:N:0:ATCACG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16204:96950_1:N:0:ATCACG Contig31925 9387 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12838:97351_1:N:0:ATCACG Contig31515 25695 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16710:97254_1:N:0:ATCACG Contig440861 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10916:97774_1:N:0:ATCACG Contig73205 2216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13979:2271_1:N:0:ATCACG Contig524036 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7232:2748_1:N:0:ATCACG Contig341501 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9627:2522_1:N:0:ATCACG Contig342185 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16700:3166_1:N:0:ATCACG Contig137296 1141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1427:4401_1:Y:0:ATCACG Contig172215 734 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15599:5977_1:N:0:ATCACG Contig24061 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9849:7482_1:N:0:ATCACG Contig219337 1673 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19294:8725_1:N:0:ATCACG Contig498964 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19830:11011_1:N:0:ATCACG Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8499:14513_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14583:16502_1:N:0:ATCACG Contig90714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10582:17852_1:N:0:ATCACG Contig43533 27405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3722:18132_1:N:0:ATCACG Contig76265 2305 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1554:18530_1:N:0:ATCACG Contig153567 766 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6094:18801_1:N:0:ATCACG Contig258391 340 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4870:21533_1:N:0:ATCACG Contig185179 1713 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11497:22057_1:N:0:ATCACG Contig274314 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6735:22978_1:N:0:ATCACG Contig131043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9637:23543_1:N:0:ATCACG Contig226469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5083:24057_1:N:0:ATCACG Contig308953 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6397:24363_1:N:0:ATCACG Contig618427 221 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15356:25546_1:N:0:ATCACG Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16060:26062_1:N:0:ATCACG Contig2385 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14252:29284_1:N:0:ATCACG Contig9424 2288 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4275:30623_1:N:0:ATCACG Contig126788 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9181:31432_1:N:0:ATCACG Contig376115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13077:32893_1:N:0:ATCACG Contig285222 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15000:33941_1:N:0:ATCACG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19879:33840_1:N:0:ATCACG Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10488:34291_1:N:0:ATCACG Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14049:35577_1:N:0:ATCACG Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1741:37537_1:N:0:ATCACG Contig202307 667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3477:37555_1:N:0:ATCACG Contig537888 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19442:39395_1:N:0:ATCACG Contig305045 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3791:40543_1:N:0:ATCACG Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9716:42649_1:N:0:ATCACG Contig536123 4419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12294:42751_1:N:0:ATCACG Contig331980 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20390:43545_1:N:0:ATCACG Contig537797 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8917:43854_1:N:0:ATCACG Contig15399 336 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19810:44451_1:N:0:ATCACG Contig453826 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10567:44755_1:N:0:ATCACG Contig455761 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19432:44827_1:N:0:ATCACG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20309:46759_1:N:0:ATCACG Contig67161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10942:47703_1:N:0:ATCACG Contig12538 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14594:47975_1:N:0:ATCACG Contig403272 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9102:49226_1:N:0:ATCACG Contig61137 13820 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8713:49812_1:N:0:ATCACG Contig173161 392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1332:50079_1:N:0:ATCACG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4547:50371_1:N:0:ATCACG Contig509943 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14398:51412_1:N:0:ATCACG Contig224030 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8207:51920_1:N:0:ATCACG Contig471135 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3129:52427_1:N:0:ATCACG Contig5202 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11788:53755_1:N:0:ATCACG Contig11605 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5730:57393_1:N:0:ATCACG Contig212116 3039 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3019:58784_1:N:0:ATCACG Contig223261 1603 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4139:59255_1:Y:0:ATCACG Contig258933 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1909:63518_1:N:0:ATCACG Contig10006 2185 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15304:64712_1:Y:0:ATCACG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9330:64989_1:Y:0:ATCACG Contig645219 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16840:65391_1:N:0:ATCACG Contig562041 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4750:67722_1:Y:0:ATCACG Contig43455 12019 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17589:68671_1:Y:0:ATCACG Contig318385 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4645:71404_1:N:0:ATCACG Contig254223 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9836:72090_1:N:0:ATCACG Contig35071 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16992:72047_1:N:0:ATCACG Contig38606 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10480:73025_1:N:0:ATCACG Contig625582 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16291:74459_1:N:0:ATCACG Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4765:74641_1:N:0:ATCACG Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20872:76129_1:N:0:ATCACG Contig166917 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6654:78102_1:N:0:ATCACG Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18452:78338_1:N:0:ATCACG Contig577287 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21017:78997_1:N:0:ATCACG Contig201025 1569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11504:79733_1:N:0:ATCACG Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14000:79595_1:Y:0:ATCACG Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17346:80330_1:N:0:ATCACG Contig390860 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16989:80554_1:N:0:ATCACG Contig337211 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8081:82408_1:N:0:ATCACG Contig676316 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5078:83927_1:N:0:ATCACG Contig85861 3248 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15587:85126_1:N:0:ATCACG Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3632:86973_1:N:0:ATCACG Contig329639 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13935:87802_1:N:0:ATCACG Contig126442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17403:89189_1:N:0:ATCACG Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1256:89626_1:N:0:ATCACG Contig106245 5795 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1627:90307_1:N:0:ATCACG Contig181967 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15679:90744_1:N:0:ATCACG Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13903:90922_1:N:0:ATCACG Contig611840 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4560:91157_1:N:0:GTCACG Contig83607 2546 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17768:91499_1:N:0:ATCACG Contig577326 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8412:92863_1:Y:0:ATCACG Contig276867 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12158:93041_1:N:0:ATCACG Contig559862 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5359:96084_1:N:0:ATCACG Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10571:98104_1:N:0:ATCACG Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18386:98197_1:N:0:ATCACG Contig339544 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16041:99258_1:Y:0:ATCACG Contig506472 659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8668:100073_1:N:0:ATCACG Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7140:2110_1:N:0:ATCACG Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17274:3695_1:N:0:ATCACG Contig54163 3621 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4658:4615_1:N:0:ATCACG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17631:5490_1:N:0:ATCACG Contig653175 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16573:5508_1:N:0:ATCACG Contig57202 7632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11604:5835_1:N:0:ATCACG Contig532615 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20570:7464_1:N:0:ATCACG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10997:7562_1:N:0:ATCACG Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12726:8275_1:N:0:ATCACG Contig81774 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16238:10564_1:N:0:ATCACG Contig572941 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15378:11724_1:N:0:ATCACG Contig263331 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4208:11915_1:N:0:ATCACG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18621:12448_1:N:0:ATCACG Contig317546 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10831:13144_1:N:0:ATCACG Contig85149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4179:13320_1:N:0:ATCACG Contig279915 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5477:15307_1:N:0:ATCACG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3244:15716_1:N:0:ATCACG Contig32241 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3347:17230_1:N:0:ATCACG Contig499830 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17550:17982_1:N:0:ATCACG Contig13618 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20955:19098_1:N:0:ATCACG Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17704:20801_1:N:0:ATCACG Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17267:21377_1:N:0:ATCACG Contig131325 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20888:22457_1:N:0:ATCACG Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17470:24930_1:N:0:ATCACG Contig13204 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12458:25426_1:N:0:ATCACG Contig418792 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2744:26602_1:N:0:ATCACG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3121:26676_1:N:0:ATCACG Contig90604 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11836:26976_1:N:0:ATCACG Contig622176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7835:27101_1:N:0:ATCACG Contig501228 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20364:27188_1:N:0:ATCACG Contig158273 1452 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19469:29415_1:N:0:ATCACG Contig292488 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7535:30371_1:N:0:ATCACG Contig33162 30897 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5669:31045_1:N:0:ATCACG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14451:31540_1:N:0:ATCACG Contig141407 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1520:32010_1:N:0:ATCACG Contig151113 970 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5615:33798_1:N:0:ATCACG Contig86430 10755 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9505:35228_1:N:0:ATCACG Contig8392 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7330:35381_1:N:0:ATCACG Contig503906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14369:36067_1:N:0:ATCACG Contig108516 2833 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14452:37002_1:N:0:ATCACG Contig597405 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15607:37167_1:N:0:ATCACG Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6200:40773_1:N:0:ATCACG Contig20782 5858 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7540:41608_1:N:0:ATCACG Contig441870 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6960:42483_1:N:0:ATCACG Contig569571 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9679:43431_1:N:0:ATCACG Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5324:43628_1:N:0:ATCACG Contig335792 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2851:44947_1:N:0:ATCACG Contig217631 3973 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11560:46699_1:N:0:ATCACG Contig233830 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17504:49179_1:N:0:ATCACG Contig325954 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11757:49304_1:N:0:ATCACG Contig298206 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12111:49447_1:N:0:ATCACG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4443:50049_1:N:0:ATCACG Contig457142 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4164:50597_1:N:0:ATCACG Contig77705 4547 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14791:50617_1:N:0:ATCACT Contig187514 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8865:54059_1:N:0:ATCACG Contig509297 168 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9495:54822_1:Y:0:ATCACG Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14510:55649_1:N:0:ATCACG Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7838:55825_1:Y:0:ATCACG Contig45395 31219 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9261:56152_1:N:0:ATCACG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19210:56303_1:Y:0:ATCACG Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3601:57100_1:N:0:ATCACG Contig159556 631 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3865:58694_1:N:0:ATCACG Contig142038 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13625:60546_1:N:0:ATCACG Contig12776 638 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5371:61331_1:N:0:ATCACG Contig622127 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3682:61516_1:N:0:ATCACG Contig615365 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16393:61551_1:N:0:AACACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11446:64574_1:N:0:ATCACG Contig124133 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7878:65470_1:N:0:GTCACG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11731:65308_1:N:0:ATCACG Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14519:65322_1:N:0:ATCACG Contig181720 2030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14014:65524_1:N:0:ATCACG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2103:66471_1:N:0:ATCACG Contig113133 1413 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2275:66826_1:N:0:ATCACG Contig248331 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3609:66822_1:N:0:ATCACG Contig226144 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15462:67589_1:N:0:ATCACG Contig98714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19053:68239_1:N:0:ATCACG Contig325648 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4281:68287_1:N:0:ATCACG Contig40253 18028 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8371:69432_1:N:0:ATCACG Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4256:69710_1:N:0:ATCACG Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7456:69833_1:N:0:ATCACG Contig317845 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15696:70730_1:N:0:ATCACG Contig55734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16011:70551_1:N:0:ATCACG Contig486303 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10945:71958_1:Y:0:ATCACT Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8824:72663_1:N:0:ATCACG Contig99807 3834 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7160:74025_1:N:0:ATCACG Contig253550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3318:74908_1:N:0:ATCACG Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15200:75047_1:N:0:ATCACG Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4259:75915_1:N:0:ATCACG Contig467553 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13210:77270_1:N:0:ATCACG Contig36226 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16146:78610_1:N:0:ATCACG Contig242531 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6705:80343_1:N:0:ATCACG Contig96166 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2946:83080_1:N:0:ATCACG Contig531121 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9766:84175_1:N:0:ATCACG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8810:84525_1:N:0:ATCACG Contig40044 247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8343:86200_1:N:0:ATCACG Contig684369 156 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12973:86207_1:N:0:ATCACG Contig80268 2728 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1155:86570_1:N:0:ATCACG Contig276556 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19681:88184_1:N:0:ATCACG Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9943:88387_1:N:0:ATCACG Contig256382 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11734:88632_1:N:0:ATCACG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16987:88625_1:N:0:ATCACG Contig235280 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10081:90213_1:N:0:ATCACG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13811:90582_1:N:0:ATCACG Contig681846 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7877:90765_1:N:0:ATCACG Contig19201 17235 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10492:91007_1:N:0:ATCACG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10418:92497_1:N:0:ATCACG Contig457578 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5335:95372_1:N:0:ATCACG Contig313365 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3116:97115_1:N:0:ATCACG Contig172485 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13915:97535_1:N:0:ATCACG Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5138:99799_1:N:0:ATCACG Contig114440 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17563:3078_1:N:0:ATCACG Contig172215 731 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9637:3276_1:N:0:ATCACG Contig78456 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3252:4157_1:N:0:ATCACG Contig178123 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19634:6104_1:N:0:ATCACG Contig104139 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10852:6473_1:N:0:ATCACG Contig347047 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7787:6567_1:N:0:ATCACG Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10118:6606_1:N:0:ATCACG Contig10508 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13082:6982_1:N:0:ATCACG Contig33174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7816:8261_1:N:0:ATCACG Contig177157 3483 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14815:8731_1:N:0:ATCACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18042:9404_1:N:0:ATCACG Contig88172 2575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10363:9560_1:N:0:ATCTCG Contig204367 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1634:12510_1:N:0:ATCACG Contig556230 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16253:14466_1:Y:0:ATCTCG Contig308953 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21037:15003_1:N:0:ATCACG Contig67161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9553:17323_1:N:0:ATCACG Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2848:17737_1:N:0:ATCACG Contig22108 157 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20578:17601_1:Y:0:ATCACG Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8109:18321_1:N:0:ATCACG Contig285931 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17944:18657_1:N:0:ATCACG Contig664578 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1673:19466_1:Y:0:ATCACG Contig1175 22992 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12788:19319_1:Y:0:ATCACA Contig181044 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13002:20041_1:N:0:ATCACG Contig523644 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16454:20919_1:N:0:ATCACG Contig338403 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16537:20853_1:N:0:ATCACG Contig57479 4706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12498:22322_1:N:0:ATCACG Contig370978 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4520:23109_1:N:0:ATCACG Contig522239 569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16330:23195_1:N:0:ATCACG Contig139112 1052 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4849:24158_1:N:0:ATCACG Contig65544 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15841:24159_1:N:0:ATCACG Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2387:24669_1:N:0:ATCACG Contig96746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9064:25661_1:N:0:ATCACG Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6826:26255_1:N:0:ATCACG Contig503100 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10901:26533_1:N:0:ATCACG Contig353863 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3882:27160_1:N:0:ATCACG Contig162395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3603:27319_1:N:0:ATCACG Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15172:27758_1:N:0:ATCACG Contig634279 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2779:28114_1:N:0:ATCACG Contig27416 33815 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7985:29475_1:N:0:ATCACG Contig625333 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10691:30062_1:N:0:ATCACG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6489:31836_1:N:0:ATCACG Contig104995 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4033:34196_1:N:0:ATCACG Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16845:36837_1:N:0:ATCACG Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12004:37245_1:N:0:ATCACG Contig416040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1365:37638_1:N:0:ATCACG Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6695:39580_1:N:0:ATCACG Contig217824 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12438:39919_1:N:0:ATCACG Contig271201 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7680:40314_1:N:0:ATCACG Contig365824 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2770:40855_1:N:0:ATCACG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20424:40969_1:N:0:ATCACG Contig407422 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2913:41113_1:N:0:ATCACG Contig233955 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19332:41614_1:N:0:ATCACG Contig317357 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5417:43134_1:N:0:ATCACG Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15867:43210_1:N:0:ATCACG Contig26988 22218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13966:45852_1:N:0:ATCACG Contig12757 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1805:46370_1:N:0:ATCACG Contig522239 567 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11822:46847_1:N:0:ATCACG Contig273760 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18834:47344_1:N:0:ATCACG Contig315899 174 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3171:47725_1:N:0:ATCACG Contig58165 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1289:48051_1:N:0:ATCACG Contig367518 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3786:48575_1:N:0:ATCACG Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4067:49269_1:N:0:ATCACG Contig47748 8666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18267:50811_1:N:0:ATCACG Contig351459 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3245:51166_1:N:0:ATCACG Contig2496 16444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2813:52189_1:N:0:ATCACG Contig343139 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5512:52384_1:N:0:ATCACG Contig648841 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21281:52523_1:N:0:ATCACG Contig670167 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10597:53027_1:N:0:ATCACG Contig36142 319 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3230:53413_1:N:0:ATCGCG Contig362242 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12955:54786_1:N:0:ATCACG Contig546842 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20974:55236_1:N:0:ATCACG Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18652:55918_1:N:0:ATCACG Contig616376 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6332:56274_1:N:0:ATCACG Contig22660 9643 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7858:57750_1:N:0:ATCACG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6876:58222_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8459:58870_1:N:0:ATCACG Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9850:62725_1:N:0:ATCACG Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9498:63395_1:N:0:ATCACG Contig380090 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11000:63628_1:N:0:ATCACG Contig208562 703 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14650:63875_1:N:0:ATCACG Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2356:65986_1:N:0:ATCACG Contig71923 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16695:65786_1:N:0:ATCACG Contig511188 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8940:67509_1:N:0:ATCACG Contig53042 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16804:68798_1:N:0:ATCACG Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5958:69085_1:N:0:ATCACG Contig262491 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16606:70052_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19998:70952_1:N:0:ATCACG Contig345 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19476:71135_1:N:0:ATCACG Contig4083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19741:71749_1:N:0:ATCACG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7897:73957_1:N:0:ATCACG Contig184490 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2822:74246_1:N:0:ATCACA Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14016:74079_1:N:0:ATCACG Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3143:74958_1:Y:0:ATCACG Contig302307 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12614:75922_1:N:0:ATCACG Contig384118 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14301:79778_1:N:0:ATCACG Contig71030 15037 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14710:80747_1:N:0:ATCACG Contig469996 536 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1628:81966_1:N:0:ATCACG Contig555927 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4771:82521_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1917:83683_1:N:0:ATCACG Contig238616 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19549:84889_1:N:0:ATCACG Contig384826 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17528:86439_1:N:0:ATCACG Contig259265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16967:87488_1:N:0:ATCACG Contig3337 17933 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6516:88527_1:N:0:ATCACG Contig100001 4974 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18049:89245_1:N:0:ATCACG Contig403649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19443:90804_1:N:0:ATCCCG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17885:91315_1:N:0:ATCACG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16329:91744_1:N:0:ATCACG Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2379:93335_1:N:0:ATCACG Contig31499 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5490:95090_1:N:0:ATCACG Contig602782 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9279:95330_1:Y:0:ATCACG Contig670732 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4066:98237_1:N:0:ATCACG Contig33217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19891:98388_1:N:0:ATCACG Contig637141 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14436:98897_1:N:0:ATCACG Contig136795 9520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4362:4138_1:N:0:ATCACG Contig622590 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2792:5182_1:Y:0:ATCACG Contig312699 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16183:5892_1:N:0:ATCACG Contig56320 3837 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20345:6140_1:N:0:ATCACG Contig34929 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4035:6294_1:N:0:ATCACG Contig90816 35835 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5524:6745_1:N:0:ATCACG Contig5823 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20935:12183_1:N:0:ATCACG Contig495904 236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15135:12458_1:N:0:ATCACG Contig329075 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13808:13112_1:N:0:ATCACG Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11411:13838_1:N:0:ATCACG Contig93980 8924 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20210:14243_1:N:0:ATCACG Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16738:14875_1:N:0:ATCACG Contig540592 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17779:15303_1:N:0:ATCACG Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16727:15745_1:N:0:ATCACG Contig444842 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17617:15723_1:N:0:ATCACG Contig261623 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16965:16458_1:N:0:ATCACG Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13818:16991_1:N:0:ATCACG Contig142347 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20859:17014_1:N:0:ATCACG Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5607:17792_1:N:0:ATCACG Contig644738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18317:18875_1:N:0:ATCACG Contig287777 302 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11204:19511_1:N:0:ATCACG Contig222574 201 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2767:20653_1:Y:0:ATCACG Contig609353 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19900:22380_1:N:0:ATCACG Contig525810 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12630:24145_1:N:0:ATCACG Contig112091 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3476:24962_1:N:0:ATCACG Contig649327 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6594:25265_1:N:0:ATCACG Contig544141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8526:28507_1:N:0:ATCACG Contig85526 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11968:28563_1:N:0:ATCACG Contig20917 185 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8516:29840_1:N:0:ATCACG Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19889:34613_1:N:0:ATCACG Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3528:38503_1:N:0:ATCACG Contig649578 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19707:39205_1:N:0:ATCACG Contig322052 403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10033:39817_1:N:0:ATCACG Contig42000 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16002:39936_1:N:0:ATCACG Contig235100 511 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3678:40192_1:N:0:ATCACG Contig225573 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14536:40256_1:N:0:ATCACG Contig191809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10209:40709_1:N:0:ATCACG Contig461113 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8856:42290_1:Y:0:ATCTCG Contig546996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5063:42717_1:N:0:ATCACG Contig121994 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7582:43842_1:N:0:ATCACG Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14781:45692_1:N:0:ATCACG Contig351483 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1774:46073_1:N:0:ATCACG Contig427673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4946:46870_1:N:0:ATCACG Contig116061 1389 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6927:47231_1:N:0:ATCACG Contig205252 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20753:47257_1:N:0:ATCACG Contig579818 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4510:47690_1:Y:0:ATCACG Contig104145 20721 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20899:47700_1:N:0:ATCACG Contig254888 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5489:48409_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9569:48699_1:N:0:ATCACG Contig67821 3138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11291:49271_1:N:0:ATCACG Contig401033 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6777:49823_1:N:0:ATCACG Contig30655 1642 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12660:50373_1:N:0:ATCACG Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5734:51314_1:N:0:ATCACG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5292:51704_1:N:0:ATCACG Contig591635 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3523:51930_1:N:0:ATCACG Contig363981 452 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1388:52464_1:N:0:ATCACG Contig612490 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20650:53815_1:N:0:ATCACG Contig73205 2216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2003:55241_1:N:0:ATCACG Contig184490 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11680:55762_1:N:0:ATCACG Contig182413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6737:56359_1:Y:0:ATCACG Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21086:56863_1:N:0:ATCACG Contig455645 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5701:58016_1:N:0:ATCACG Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5870:59935_1:N:0:ATCACG Contig477973 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11486:59851_1:N:0:ATCACG Contig242743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10037:60097_1:Y:0:ATCCCG Contig523644 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1678:61173_1:N:0:ATCACG Contig218346 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7472:61335_1:N:0:ATCACG Contig150484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19740:61752_1:N:0:ATCACG Contig173585 725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3028:62222_1:N:0:ATCACG Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17849:62470_1:N:0:ATCACG Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16649:63524_1:N:0:ATCACG Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17193:66001_1:N:0:GTCACG Contig550817 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8477:68623_1:N:0:ATCACG Contig344698 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9984:70519_1:N:0:ATCACG Contig187331 591 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4887:71238_1:N:0:ATCACG Contig575675 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15530:71714_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6240:72886_1:N:0:ATCACG Contig67161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7378:74052_1:N:0:ATCACG Contig331980 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8813:74358_1:N:0:ATCACG Contig551582 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10105:76349_1:N:0:ATCACG Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1860:78473_1:N:0:ATCACG Contig81762 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8546:78451_1:N:0:ATCACG Contig82672 4104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21013:78446_1:N:0:ATCACG Contig459955 941 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7022:79743_1:N:0:ATCACG Contig155283 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4202:79967_1:N:0:ATCACG Contig552246 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4768:81551_1:N:0:ATCACG Contig90821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6634:81560_1:N:0:ATCACG Contig579818 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12618:81892_1:N:0:ATCACG Contig522239 569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13314:81903_1:N:0:ATCACG Contig23889 16419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11581:82702_1:N:0:ATCACG Contig165524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19620:82574_1:N:0:ATCACG Contig174258 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7204:82787_1:Y:0:ATCACG Contig338580 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4017:83748_1:N:0:ATCACG Contig493157 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18056:84439_1:N:0:ATCACG Contig592330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5079:84997_1:N:0:ATCACG Contig308706 265 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3005:85085_1:N:0:ATCACG Contig25964 8822 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15553:85767_1:N:0:ATCACG Contig145497 4339 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4152:86863_1:N:0:ATCACG Contig201331 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20564:87001_1:N:0:ATCACG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8301:87274_1:N:0:ATCACG Contig629431 216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11457:90029_1:Y:0:ATCACG Contig92721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14204:90736_1:N:0:ATCACG Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15311:91654_1:N:0:ATCACG Contig479183 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13113:93148_1:N:0:ATCACG Contig335792 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11646:95087_1:N:0:ATCACG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1416:96059_1:N:0:ATCACG Contig5935 5864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16102:96826_1:N:0:ATCACG Contig363416 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19790:97224_1:Y:0:ATCACG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8978:98025_1:N:0:ATCACG Contig255508 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14738:98211_1:N:0:ATCACG Contig96078 1732 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15736:98520_1:N:0:ATCACG Contig6545 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1605:2415_1:N:0:ATCACG Contig140574 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17430:7649_1:N:0:ATCACG Contig76276 4540 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7778:8751_1:N:0:ATCACG Contig294598 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2947:9124_1:N:0:ATCACG Contig536999 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4680:9319_1:N:0:ATCACG Contig197727 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6959:10212_1:N:0:ATCACG Contig165954 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2099:10427_1:N:0:ATCACG Contig530889 242 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2986:10426_1:N:0:ATCACG Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5130:12840_1:N:0:ATCACG Contig79093 14735 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11946:13292_1:N:0:ATCACG Contig9115 289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2223:14067_1:N:0:ATCACG Contig384714 208 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5235:14576_1:N:0:ATCACG Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17905:14789_1:N:0:ATCACG Contig58336 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12379:17881_1:N:0:ATCACG Contig101745 10607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6812:19186_1:N:0:ATCACG Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14710:21183_1:N:0:ATCACG Contig44127 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10180:22221_1:N:0:ATCACG Contig626418 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19267:22830_1:N:0:ATCACG Contig358531 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19273:22875_1:N:0:ATCACG Contig81954 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20286:22951_1:N:0:ATCACG Contig72866 10401 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7974:23479_1:N:0:ATCACG Contig532182 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18338:24083_1:N:0:ATCACG Contig144600 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19215:24774_1:N:0:ATCACG Contig193909 282 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8449:26125_1:N:0:ATCACG Contig408719 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20828:29862_1:N:0:ATCACG Contig681272 417 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18505:30129_1:N:0:ATCACG Contig13974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6521:31004_1:N:0:ATCACG Contig79195 906 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18269:31849_1:N:0:ATCACG Contig666951 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18675:31803_1:N:0:ATCACG Contig315630 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13601:32299_1:N:0:ATCACG Contig539364 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19484:32437_1:N:0:ATCACG Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11322:35170_1:N:0:ATCACG Contig292422 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16774:38304_1:N:0:ATCACG Contig342697 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1119:38739_1:Y:0:ATCACG Contig298940 182 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17985:38597_1:N:0:ATCACG Contig414714 382 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10176:40597_1:N:0:ATCACG Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16332:40983_1:N:0:ATCACG Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2723:41168_1:N:0:ATCACG Contig186589 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2680:41659_1:Y:0:ATCACG Contig356806 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14381:42286_1:N:0:ATCACG Contig224935 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18459:42297_1:N:0:ATCACG Contig484840 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6036:42503_1:Y:0:ATCACG Contig96744 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20132:42538_1:N:0:ATCACG Contig140997 1338 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20663:42661_1:N:0:ATCACG Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3939:43000_1:N:0:ATCACG Contig182923 1848 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12120:42766_1:N:0:ATCACG Contig200783 1106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8788:43069_1:N:0:ATCACG Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17673:43339_1:Y:0:ATCACG Contig162395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5866:44130_1:N:0:ATCACG Contig103512 5372 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3322:44945_1:N:0:ATCACG Contig166423 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13563:47536_1:N:0:ATCACG Contig635425 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2510:47945_1:N:0:ATCACG Contig414085 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10433:48788_1:N:0:ATCACG Contig243128 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21193:50198_1:N:0:ATCACG Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6754:50357_1:N:0:ATCACG Contig75639 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15100:51200_1:N:0:ATCACG Contig457780 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5949:52271_1:Y:0:ATCACG Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7447:53083_1:N:0:ATCACG Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6430:53608_1:N:0:ATCACG Contig411193 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5130:54574_1:N:0:ATCACG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7721:55486_1:N:0:ATCACG Contig501080 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1756:56064_1:N:0:ATCACG Contig52426 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15058:56811_1:N:0:ATCACG Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15985:58925_1:N:0:ATCACG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20599:59454_1:Y:0:ATCACG Contig319245 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11535:61997_1:Y:0:ATCACG Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8203:62193_1:N:0:ATCACG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4062:63378_1:N:0:ATCACG Contig10756 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15051:65517_1:Y:0:ATCACG Contig501556 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4760:65786_1:N:0:ATCACG Contig150394 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17053:65757_1:N:0:ATCACG Contig552154 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11180:66053_1:N:0:ATCACG Contig532280 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19170:68538_1:N:0:ATCACG Contig361091 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13240:69060_1:N:0:ATCACG Contig634105 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17465:69888_1:N:0:ATCACG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8298:70558_1:N:0:ATCACG Contig13055 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13724:71399_1:N:0:ATCACG Contig291722 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16672:71689_1:N:0:ATCACG Contig128385 977 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13231:73646_1:N:0:ATCACG Contig50825 6661 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17456:75075_1:N:0:ATCACG Contig311753 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15223:75639_1:N:0:ATCACG Contig436114 253 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15204:76326_1:N:0:ATCACG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19286:76715_1:N:0:ATCACG Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11552:77253_1:N:0:ATCACG Contig98959 14470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12647:78857_1:N:0:ATCACG Contig18716 78248 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19437:78768_1:N:0:ATCACG Contig406752 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3316:79469_1:Y:0:ATCACG Contig517104 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9001:80274_1:N:0:ATCACG Contig193762 703 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2816:81975_1:N:0:ATCACG Contig97707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14426:82156_1:N:0:ATCACG Contig191809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19256:83863_1:Y:0:ATCACG Contig594444 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12566:84296_1:N:0:ATCACG Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5490:84774_1:N:0:ATCACG Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16752:88565_1:N:0:ATCACG Contig424300 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15131:89522_1:N:0:ATCACG Contig84439 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12599:91013_1:N:0:ATCACG Contig190401 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12389:91453_1:N:0:ATCACG Contig140307 753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18993:91318_1:N:0:ATCACG Contig646301 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7404:91747_1:N:0:ATCACG Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7931:92419_1:N:0:ATCACG Contig103717 1619 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14912:93307_1:N:0:ATCACG Contig31242 17335 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4928:93522_1:N:0:ATCACG Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20025:94038_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7237:94793_1:N:0:ATCACG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13373:95102_1:N:0:ATCACG Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15983:97041_1:N:0:ATCACG Contig602924 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8885:97668_1:N:0:ATCACG Contig324493 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10443:97975_1:N:0:ATCACG Contig10933 535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4861:98954_1:N:0:ATCACG Contig172485 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11369:98964_1:N:0:ATCACG Contig179857 5289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19894:98924_1:N:0:ATCACG Contig119718 870 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5447:100005_1:N:0:ATCACG Contig247351 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5195:2457_1:N:0:ATCACG Contig118490 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20351:2470_1:N:0:ATCACG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12182:3976_1:N:0:ATCACG Contig505056 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19494:4803_1:N:0:ATCACG Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5363:5128_1:N:0:ATCACG Contig663733 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16994:5021_1:N:0:ATCACG Contig73529 7041 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10217:5481_1:N:0:ATCACG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6869:5627_1:N:0:ATCACG Contig120726 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6669:6213_1:N:0:ATCACG Contig51471 15982 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7278:6387_1:N:0:ATCACG Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13780:6615_1:N:0:ATCACG Contig451267 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6360:6848_1:N:0:ATCACG Contig579877 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3078:7222_1:N:0:ATCACG Contig588443 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3444:7227_1:N:0:ATCACG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18894:8709_1:N:0:ATCACG Contig323485 162 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9758:9119_1:N:0:ATCACG Contig434960 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10996:10240_1:N:0:ATCACG Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7753:10367_1:N:0:ATCACG Contig328969 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7337:11081_1:N:0:ATCACG Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11674:12848_1:N:0:ATCACG Contig351894 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18948:12995_1:N:0:ATCACG Contig483361 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18495:13259_1:N:0:ATCACG Contig9137 6897 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6399:13547_1:N:0:ATCACG Contig599596 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8957:14001_1:N:0:ATCACG Contig358147 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13644:15214_1:N:0:ATCACG Contig568861 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2504:15915_1:N:0:ATCACG Contig139084 1 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 630844 (63.08%) aligned 0 times 133687 (13.37%) aligned exactly 1 time 235469 (23.55%) aligned >1 times 36.92% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 682139 (68.21%) aligned 0 times 124398 (12.44%) aligned exactly 1 time 193463 (19.35%) aligned >1 times 31.79% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 681565 (68.16%) aligned 0 times 124267 (12.43%) aligned exactly 1 time 194168 (19.42%) aligned >1 times 31.84% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 630463 (63.05%) aligned 0 times 133482 (13.35%) aligned exactly 1 time 236055 (23.61%) aligned >1 times 36.95% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_1_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_1_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 330105 Mapping efficiency: 33.0% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2004225 Total methylated C's in CpG context: 268177 Total methylated C's in CHG context: 8942 Total methylated C's in CHH context: 100991 Total methylated C's in Unknown context: 53 Total unmethylated C's in CpG context: 55344 Total unmethylated C's in CHG context: 401993 Total unmethylated C's in CHH context: 1168778 Total unmethylated C's in Unknown context: 383 C methylated in CpG context: 82.9% C methylated in CHG context: 2.2% C methylated in CHH context: 8.0% C methylated in Unknown context (CN or CHN): 12.2% Bismark completed in 0d 6h 5m 49s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_2_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_2_s456_trimmed.fq.gz to zr1394_2_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_2_s456_trimmed.fq.gz to zr1394_2_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_2_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_2_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_2_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_2_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1359:2236_1:N:0:CGATGT 4 * 0 0 * * 0 0 AATGTAATGATGTTAAATATGTATTAGAAAT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF YT:Z:UU Now starting the Bowtie 2 aligner for CTreadGAgenome (reading in sequences from zr1394_2_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1359:2236_1:N:0:CGATGT 16 Contig71260_GA_converted 4948 0 31M * 0 0 ATTTCTAATACATATTTAACATCATTACATT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF AS:i:-6 XS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:23C7 YT:Z:UU Now starting the Bowtie 2 aligner for GAreadCTgenome (reading in sequences from zr1394_2_s456_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --nofw) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1359:2236_1:N:0:CGATGT 4 * 0 0 * * 0 0 AATATAATAATATTAAATACATATTAAAAAT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF YT:Z:UU Now starting the Bowtie 2 aligner for GAreadGAgenome (reading in sequences from zr1394_2_s456_trimmed.fq.gz_G_to_A.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/GA_conversion/BS_GA Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1359:2236_1:N:0:CGATGT 4 * 0 0 * * 0 0 AATATAATAATATTAAATACATATTAAAAAT FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF YT:Z:UU >>> Writing bisulfite mapping results to zr1394_2_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_2_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8179:5772_1:N:0:CGATGT Contig349963 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7135:6610_1:N:0:CGATGT Contig225956 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8206:9126_1:N:0:CGATGT Contig209981 755 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21231:9907_1:N:0:CGATGT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7012:10727_1:N:0:CGATGT Contig464751 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12199:11190_1:N:0:CGATGT Contig287982 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9838:14176_1:N:0:CGATGT Contig523135 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19396:14027_1:N:0:CGATGT Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3438:15711_1:N:0:CGATGT Contig135390 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16924:15626_1:N:0:CGATGT Contig487566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11998:16128_1:N:0:CGATGT Contig266248 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15438:16068_1:N:0:CGATGT Contig368787 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10772:17215_1:N:0:CGATGT Contig7769 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7936:22022_1:N:0:CGATGT Contig483326 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9296:24076_1:N:0:CGATGT Contig606426 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14139:25526_1:Y:0:CGATGT Contig477987 318 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17340:25728_1:N:0:CGATGT Contig63084 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16154:27706_1:N:0:CGATGT Contig163914 393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8667:28334_1:N:0:CGATGT Contig509260 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19940:29494_1:N:0:CGATGT Contig64893 2762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16025:29820_1:N:0:CGATGT Contig116847 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16828:30806_1:N:0:CGATGT Contig576953 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3255:32230_1:N:0:CGATGT Contig515390 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12678:32143_1:N:0:CGATGT Contig46567 2871 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18314:32971_1:N:0:CGATGT Contig186646 1488 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16207:33052_1:N:0:CGATGT Contig399618 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5425:34149_1:N:0:CGATGT Contig484840 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12245:37298_1:N:0:CGATGT Contig552823 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2573:38089_1:N:0:CGATGT Contig615701 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5267:38088_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7689:38605_1:Y:0:CGATGT Contig540996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16867:39632_1:N:0:CGATGT Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3633:39889_1:N:0:CGATGT Contig597109 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5405:40184_1:N:0:CGATGT Contig680866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2293:40930_1:N:0:CGATGT Contig312939 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17614:40964_1:N:0:CGATGT Contig393611 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9035:43647_1:N:0:CGATAT Contig96432 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14271:43543_1:N:0:CGATGT Contig213853 1808 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11736:44057_1:N:0:CGATGT Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12056:44902_1:N:0:CGATGT Contig116644 8057 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3947:46362_1:N:0:CGATGT Contig6545 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7104:47434_1:N:0:CGATGT Contig237165 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10999:49836_1:N:0:CGATGT Contig10373 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11529:53726_1:N:0:CGATGT Contig637514 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12605:55699_1:N:0:CGATGT Contig492907 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11210:56366_1:N:0:CGATGT Contig71265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10054:57211_1:Y:0:CGATGT Contig426266 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8863:57744_1:Y:0:CGATGT Contig1018 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1381:58791_1:N:0:CGATGT Contig216582 932 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2371:58803_1:N:0:CGATGT Contig522741 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10558:61437_1:N:0:CGATGT Contig373633 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6185:63708_1:N:0:CGATGT Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9196:64422_1:N:0:CGATGT Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5607:65379_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16750:65572_1:N:0:CGATGT Contig598509 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10245:66872_1:N:0:AGATGT Contig223787 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13157:66934_1:Y:0:CGATGT Contig397179 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20873:67058_1:N:0:CGATGT Contig575546 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21179:67804_1:N:0:CGATGT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5083:68238_1:N:0:CGATGT Contig176784 757 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2769:69278_1:N:0:CGATGT Contig431873 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12682:69795_1:N:0:CGATGT Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15063:69755_1:N:0:CGATGT Contig1949 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14464:70726_1:N:0:CGATGT Contig376438 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4153:71204_1:N:0:CGATGT Contig45971 2037 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9385:71457_1:N:0:CGATGT Contig435454 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17853:71366_1:N:0:CGATGT Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18376:72123_1:N:0:CGATGT Contig335044 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14232:72489_1:N:0:CGATGT Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6998:74075_1:N:0:CGATGT Contig568405 361 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13225:74058_1:N:0:CGATGT Contig480681 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19827:75162_1:N:0:CGATGT Contig52530 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12738:75353_1:N:0:CGATGT Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17977:75838_1:N:0:CGATGT Contig525081 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7796:76476_1:N:0:CGATGT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12658:79361_1:N:0:CGATGT Contig24576 8631 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11002:79607_1:N:0:CGATGT Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17062:79576_1:N:0:CGATGT Contig114817 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1728:83786_1:N:0:CGATGT Contig317280 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11379:83949_1:N:0:CGATGT Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1904:84479_1:N:0:CGATGT Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5469:84316_1:N:0:CGATGT Contig567686 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15515:84348_1:N:0:CGATGT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17394:84476_1:N:0:CGATGT Contig32043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7962:86330_1:N:0:CGATGT Contig402652 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5002:87041_1:N:0:CGATGT Contig59744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20450:87768_1:N:0:CGATGT Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14254:88323_1:N:0:CGATGT Contig245032 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1146:92291_1:N:0:TGATGT Contig12062 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9834:92263_1:N:0:CGATGT Contig50279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4643:93686_1:N:0:CGATGT Contig340795 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13349:93503_1:N:0:CGATGT Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10782:94791_1:Y:0:CGATGT Contig349182 296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11357:95091_1:N:0:CGATGT Contig516232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3895:95778_1:N:0:CGATGT Contig437842 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20334:96400_1:N:0:CGATGT Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8657:96798_1:N:0:CGATGT Contig3009 8497 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15319:97198_1:N:0:CGATGT Contig77043 2599 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7564:97716_1:N:0:CGATGT Contig33932 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9482:98186_1:N:0:CGATGT Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9400:99273_1:N:0:CGATGT Contig182 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5277:99690_1:Y:0:CAATGT Contig81594 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15630:99727_1:N:0:CGATGT Contig98325 1133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19056:4973_1:N:0:CGATGT Contig76322 6598 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18364:5491_1:Y:0:CGATGT Contig98010 1760 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17893:6207_1:N:0:CGATGT Contig159556 633 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4100:7247_1:N:0:CGATGT Contig695047 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4770:7050_1:N:0:CGATGT Contig75581 1739 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6257:8086_1:N:0:CGATGT Contig498944 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8549:10288_1:N:0:CGATGT Contig382561 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15127:13382_1:N:0:CGATGT Contig398905 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8032:14061_1:N:0:CGATGT Contig71814 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8149:14172_1:N:0:CGATGT Contig113375 1686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6794:14832_1:N:0:CGATGT Contig128909 3374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9089:15129_1:N:0:CGATGT Contig87582 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12531:15033_1:N:0:CGATGT Contig588895 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10330:16802_1:Y:0:CGATGT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14071:17676_1:N:0:CGATGT Contig249009 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5220:20499_1:N:0:CGATGT Contig335108 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3582:23008_1:N:0:CGATGT Contig691543 193 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10870:23741_1:N:0:CGATGT Contig593927 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11691:23733_1:N:0:CGATGT Contig50279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16361:23929_1:N:0:CGATGT Contig382437 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7284:25527_1:N:0:CGATGT Contig426209 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16942:25804_1:Y:0:CGATGT Contig56827 29197 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1709:27131_1:N:0:CGATGT Contig180297 484 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10678:28407_1:Y:0:CGATGT Contig623754 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20088:30340_1:N:0:CGATGT Contig310870 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3841:30723_1:N:0:CGATGT Contig472699 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5032:31187_1:N:0:CGATGT Contig139058 1632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10426:31778_1:N:0:CGATGT Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19509:32152_1:Y:0:CGATGT Contig655472 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11760:32268_1:N:0:CGATGT Contig585966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9694:35231_1:N:0:CGATGT Contig446707 156 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20505:35534_1:N:0:CGATGT Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5563:37100_1:N:0:CGATGT Contig160026 407 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10699:37184_1:N:0:CGATGT Contig174710 410 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9159:37676_1:N:0:CGATGT Contig78223 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12080:40229_1:N:0:CGATGT Contig362766 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18000:41572_1:N:0:CGATTT Contig677947 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12054:41849_1:N:0:CGATGT Contig367229 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5959:42011_1:N:0:CGATGT Contig201334 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11840:44167_1:N:0:CGATGT Contig361630 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6369:44349_1:Y:0:CGATGT Contig46387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13577:44618_1:N:0:CGATGT Contig46469 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18588:45627_1:N:0:CGATGT Contig278034 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12680:45863_1:N:0:CGATGT Contig61927 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18932:45797_1:N:0:CGATGT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16040:47506_1:Y:0:CGATGT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9435:50399_1:N:0:CGATGT Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12366:50802_1:N:0:CGATGT Contig61957 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11940:51241_1:N:0:CGATGT Contig72689 2087 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13906:51946_1:N:0:CGATGT Contig294724 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13370:52829_1:N:0:CGATGT Contig329726 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2699:53929_1:N:0:CGATGT Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15240:53851_1:N:0:CGATGT Contig630640 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20987:54427_1:N:0:CGATGT Contig298940 182 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1415:56269_1:N:0:CGATGT Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1976:56890_1:N:0:CGATGT Contig36514 10856 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20567:57512_1:N:0:CGATGT Contig259567 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10986:58722_1:N:0:CGATGT Contig272596 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9860:60134_1:N:0:CGATGT Contig437880 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15007:63335_1:N:0:CGATGT Contig31552 55709 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10458:64103_1:N:0:CGATGT Contig475304 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13225:64186_1:N:0:CGATGT Contig35434 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17288:64121_1:N:0:CGATGT Contig43403 19745 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6212:65184_1:N:0:CGATGT Contig557232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9748:65662_1:N:0:CGATGT Contig314528 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10864:66017_1:N:0:CGATGT Contig49687 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9187:66417_1:N:0:CGATGT Contig295449 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7515:68647_1:Y:0:CGATGT Contig499830 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19218:69156_1:N:0:CGATGT Contig30765 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15727:69257_1:N:0:CGATGT Contig185232 1043 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9487:69668_1:N:0:CGATGT Contig67821 3139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19427:70037_1:N:0:CGATGT Contig124195 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1798:72584_1:N:0:CGATGT Contig399153 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11882:72774_1:N:0:CGATGT Contig165074 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8980:73498_1:N:0:CGATGT Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9476:73374_1:N:0:CGATGT Contig577461 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18689:74104_1:N:0:CGATGT Contig105049 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3653:76318_1:N:0:CGATGT Contig99076 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9207:76655_1:N:0:CGATGT Contig282187 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9550:77243_1:N:0:CGATGT Contig36756 8461 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13553:78861_1:N:0:CGATGT Contig598509 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3297:81702_1:N:0:CGATGT Contig620222 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7622:82545_1:N:0:CGATGT Contig317970 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18673:82687_1:N:0:CGATGT Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1448:82786_1:N:0:CGATGT Contig82672 4104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4085:83183_1:N:0:CGATGT Contig405482 4177 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12449:83867_1:N:0:CGATGT Contig556672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18709:84168_1:Y:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4185:84680_1:N:0:CGATGT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19910:84512_1:N:0:CGATGT Contig367562 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3457:84904_1:N:0:CGATGT Contig154190 442 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5007:84784_1:N:0:CGATGT Contig439349 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6329:85524_1:N:0:CGATGT Contig553632 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3720:87331_1:N:0:CGATGT Contig483957 141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1481:87878_1:Y:0:CGATGT Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3366:88903_1:N:0:CGATGT Contig403407 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17817:89247_1:N:0:CGATGT Contig58165 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16406:89627_1:N:0:CGATGT Contig240144 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15549:89886_1:N:0:CGATGT Contig182130 803 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17435:91326_1:Y:0:CGATGT Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19090:91499_1:Y:0:CGATGT Contig542597 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5815:91569_1:N:0:CGATGT Contig91737 2064 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19825:91615_1:N:0:CGATGT Contig325648 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2518:93286_1:N:0:CGATGT Contig343051 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7237:94973_1:N:0:CGATGT Contig12116 740 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9079:96033_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7905:96995_1:N:0:CGATGT Contig70027 8992 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8768:97095_1:N:0:CGATGT Contig139082 8318 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11660:97439_1:N:0:CGATGT Contig433896 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2334:98769_1:N:0:CGATGT Contig254674 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4803:99068_1:N:0:CGATGT Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18514:99184_1:N:0:CGATGT Contig677639 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3380:100196_1:N:0:CGATGT Contig104430 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11169:2995_1:N:0:CGATGT Contig104430 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3792:3658_1:N:0:CGATGT Contig204524 376 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15719:6031_1:N:0:CGATGT Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3627:6747_1:N:0:CGATGT Contig239488 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18784:7060_1:Y:0:CGATGT Contig649713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3832:7395_1:N:0:CGATGT Contig58853 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17028:7370_1:N:0:CGATGT Contig218545 766 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8542:7510_1:N:0:CGATGT Contig315141 209 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17990:7953_1:N:0:CGATGT Contig213425 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16397:8201_1:N:0:CGATGT Contig193909 282 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5604:10158_1:N:0:CGATGT Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8139:10417_1:N:0:CGATGT Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6781:11483_1:N:0:CGATGT Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11653:12640_1:N:0:CGATGT Contig1714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12885:13148_1:N:0:CGATGT Contig66906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7013:14000_1:N:0:CGATGT Contig479402 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9164:15123_1:N:0:CGATGT Contig523999 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9088:15458_1:N:0:CGATGT Contig28720 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18889:15891_1:N:0:CGATGT Contig73537 4006 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1694:17325_1:N:0:CGATGT Contig103678 2398 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5281:18133_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17549:19839_1:N:0:CGATGT Contig388350 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20544:20268_1:N:0:CGATGT Contig127387 3236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10246:22514_1:N:0:CGATGT Contig95842 2292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5330:23547_1:N:0:CGATGT Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1146:23808_1:N:0:CGATGT Contig207539 786 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15701:25025_1:N:0:CGATGT Contig629506 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14493:25895_1:N:0:CGATGT Contig254703 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14545:26197_1:N:0:CGATGT Contig213425 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5218:26423_1:N:0:CGATGT Contig267234 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5143:26993_1:Y:0:CGATGT Contig69591 6010 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3743:27656_1:N:0:CGATGT Contig115691 4856 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4002:27566_1:N:0:CGATGT Contig282198 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14137:28620_1:N:0:CGATGT Contig212583 287 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1615:29797_1:N:0:CGATGT Contig221585 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13230:32217_1:N:0:CGATGT Contig66462 6808 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17143:33291_1:N:0:CGATGT Contig211586 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14169:33608_1:N:0:CGATGT Contig104430 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19165:33617_1:N:0:CGATGT Contig300426 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7423:33845_1:N:0:CGATGT Contig68690 3424 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9009:33817_1:N:0:CGATGT Contig104271 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9128:35748_1:N:0:CGATGT Contig82566 2504 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9772:35905_1:N:0:CGATGT Contig449113 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16647:35799_1:Y:0:CCATGT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1839:37456_1:N:0:CGATGT Contig74916 7868 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1484:38995_1:N:0:CGATGT Contig19731 201 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9164:39313_1:N:0:CGATGT Contig159556 630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13116:39293_1:N:0:CGATGT Contig477220 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5228:39664_1:N:0:CGATGT Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7441:40774_1:N:0:CGATGT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16136:42230_1:N:0:CGATGT Contig654734 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9434:42385_1:N:0:CGATGT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4188:43033_1:N:0:CGATGT Contig167447 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18549:43015_1:N:0:CGATGT Contig650262 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15890:43674_1:N:0:CGATGT Contig70112 10200 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6090:44239_1:N:0:CGATGT Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2896:44645_1:N:0:CGATGT Contig512307 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9992:45399_1:N:0:CGATGT Contig208095 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16159:45932_1:N:0:CGATGT Contig634836 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2469:47141_1:N:0:CGATGT Contig179735 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19964:48271_1:N:0:CGATGT Contig210594 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8472:49010_1:N:0:CGATGT Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7211:49336_1:N:0:CGATGT Contig517664 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16487:50777_1:N:0:CGATGT Contig132608 1645 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20957:51803_1:N:0:CGATGT Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16128:52530_1:N:0:CGATGT Contig214964 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3308:53539_1:N:0:CGATGT Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2201:55327_1:N:0:CGATGT Contig91576 9419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10370:55333_1:N:0:CGATGT Contig16579 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2796:57354_1:N:0:CGATGT Contig384451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3990:57499_1:N:0:CGATGT Contig188524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12705:57533_1:N:0:CGATGT Contig136409 5952 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12947:57555_1:N:0:CGATGT Contig89031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18443:60364_1:N:0:CGATGT Contig244034 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8409:62191_1:N:0:CGATGT Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15920:62557_1:N:0:CGATGT Contig190185 327 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14519:63223_1:N:0:CGATGT Contig664686 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10923:63493_1:N:0:CGATGT Contig320234 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5647:63743_1:N:0:CGATGT Contig187261 580 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8050:64282_1:N:0:CGATGT Contig21347 8182 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3795:65427_1:N:0:CGATGT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7140:65406_1:N:0:CGATGT Contig437918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8524:65627_1:N:0:CGATGT Contig181120 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5546:66120_1:N:0:CGATGT Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14584:66585_1:N:0:CGATGT Contig653580 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2624:67164_1:N:0:CGATGT Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8749:67192_1:N:0:CGATGT Contig432793 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16263:68302_1:N:0:CGATGT Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14017:68780_1:N:0:CGATGT Contig565223 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19630:68938_1:N:0:CGATGT Contig358160 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4913:69745_1:N:0:CGATGT Contig573183 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5672:70855_1:N:0:CGATGT Contig4083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6594:72291_1:N:0:CGATGT Contig344531 149 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3997:73222_1:N:0:CGATGT Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18747:73622_1:N:0:CGATGT Contig159556 631 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4633:75255_1:N:0:CGATGT Contig59545 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13596:76095_1:N:0:CGATGT Contig167447 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18912:78356_1:N:0:CGATGT Contig253289 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8143:78964_1:N:0:CGATGT Contig407197 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10056:79012_1:N:0:CGATGT Contig216582 932 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20711:81654_1:N:0:CGATGT Contig535149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3388:82054_1:N:0:CGATGT Contig349477 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15426:82710_1:N:0:CGATGT Contig234905 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5255:84483_1:N:0:CGATGT Contig367336 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1333:84629_1:N:0:CGATGT Contig104439 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18680:84502_1:N:0:CGATGT Contig202608 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11162:85005_1:N:0:CGATGT Contig317473 186 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14487:85274_1:N:0:CGATGT Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15150:85738_1:N:0:CGATGT Contig120246 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15847:85561_1:N:0:CGATGT Contig568405 361 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14921:87866_1:N:0:CGATGT Contig21802 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8807:88108_1:N:0:CGATGT Contig332269 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17009:88456_1:N:0:CGATGT Contig357296 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1582:88671_1:N:0:CGATGT Contig649721 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6147:90875_1:N:0:CGATGT Contig51452 7800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8853:90901_1:N:0:CGATGT Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9284:91701_1:N:0:CGATGT Contig234312 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16035:91611_1:N:0:AGATGT Contig433430 227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9320:94221_1:N:0:CGATGT Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1439:95764_1:N:0:CGATGT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5881:97190_1:N:0:CGATGT Contig660781 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6259:2725_1:N:0:CGATGT Contig14819 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2685:2977_1:N:0:CGATGT Contig279849 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13692:2838_1:N:0:CGATGT Contig153393 688 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15307:3567_1:N:0:CGATGT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13616:4285_1:N:0:CGATGT Contig306106 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13537:4773_1:N:0:CGATGT Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13155:5584_1:N:0:CGATGT Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10707:5816_1:N:0:CGATGT Contig129915 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16378:6824_1:N:0:CGATGT Contig63170 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13543:7163_1:N:0:CGATGT Contig277652 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20405:7175_1:N:0:CGATGT Contig258373 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10118:7786_1:N:0:CGATGT Contig538089 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11675:8805_1:N:0:CGATGT Contig104271 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17363:10457_1:N:0:CGATGT Contig43880 6706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16595:12306_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5603:12999_1:N:0:CGATGT Contig128800 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7784:14172_1:N:0:CGATGT Contig130628 1634 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2691:14791_1:N:0:CGTTGT Contig31612 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12272:15133_1:N:0:CGATGT Contig499830 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15353:16351_1:N:0:CGATGT Contig252652 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19859:16279_1:N:0:CGATGT Contig363459 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13476:16758_1:N:0:CGATGT Contig107527 1614 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11537:17287_1:Y:0:CGATGT Contig385483 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1763:18637_1:N:0:CGATGT Contig108516 2834 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14864:18826_1:Y:0:CGTTGT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3881:19618_1:N:0:CGATGT Contig312260 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10961:20868_1:N:0:CGATGT Contig416040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20556:21205_1:N:0:CGATGT Contig228818 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6712:21579_1:N:0:CGATGT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10103:22919_1:N:0:CGATGT Contig82766 2570 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15021:22766_1:N:0:CGATGT Contig28023 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20124:23320_1:N:0:CGATGT Contig500899 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10630:24204_1:N:0:CGATGT Contig370029 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15270:27837_1:N:0:CGATGT Contig190730 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6175:28131_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8444:28523_1:N:0:CGATGT Contig660625 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13149:29028_1:N:0:CGATGT Contig583195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3321:29700_1:N:0:CGATGT Contig17455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15236:29700_1:Y:0:CGATGT Contig334129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4979:29770_1:N:0:CGATGT Contig213444 4132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11729:30444_1:N:0:CGATGT Contig51452 7798 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16583:32631_1:N:0:CGATGT Contig338506 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7485:34049_1:N:0:CGATGT Contig282228 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17270:38785_1:N:0:CGATGT Contig470670 677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17186:39987_1:N:0:CGATGT Contig7679 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13461:40874_1:N:0:CGATGT Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6639:41057_1:N:0:CGATGT Contig127350 1617 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13208:41030_1:N:0:CGATGT Contig189591 318 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4208:43093_1:Y:0:CGATGT Contig530378 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10843:43204_1:N:0:CGATGT Contig615224 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14722:44337_1:Y:0:CGATGT Contig226469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19339:44511_1:Y:0:CGAGGT Contig430229 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2370:48685_1:N:0:CGATGT Contig58165 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18680:51130_1:N:0:CGATGT Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12378:52070_1:Y:0:CGATGT Contig188781 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9328:52251_1:N:0:CGATGT Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1658:53495_1:Y:0:CGATGT Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12433:54834_1:N:0:CGATGT Contig319679 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9953:55222_1:N:0:CGATGT Contig165222 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13941:55030_1:N:0:CGATGT Contig38828 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16275:56615_1:N:0:CGATGT Contig25964 8820 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11073:57134_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10707:57929_1:N:0:CGATGT Contig216703 514 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1763:58245_1:N:0:CGATGT Contig611746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19833:58468_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13864:59654_1:N:0:CGATGT Contig299709 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1434:60346_1:N:0:CGATGT Contig56169 9191 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8119:60629_1:N:0:CGATGT Contig120335 2087 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21273:61244_1:N:0:CGATGT Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13410:62129_1:N:0:CGATGT Contig312918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10724:62264_1:N:0:CGATGT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3876:62850_1:N:0:CGATGT Contig55167 482 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12915:62769_1:N:0:CGATGT Contig172124 444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5200:65474_1:N:0:CGATGT Contig14980 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19189:65591_1:N:0:CGATGT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19446:68474_1:N:0:CGATGT Contig258447 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14854:68924_1:N:0:CGATGT Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9841:69301_1:N:0:CGATGT Contig417503 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9057:70160_1:N:0:CGATGT Contig401912 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12082:71942_1:N:0:CGATGT Contig128657 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13553:72807_1:N:0:CGATGT Contig604633 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11311:74751_1:N:0:CGATGT Contig376115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13608:75174_1:N:0:CGATGT Contig18116 4013 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18770:75761_1:N:0:CGATGT Contig44935 2058 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6515:76274_1:N:0:CGATGT Contig500087 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11151:76675_1:N:0:CGATGT Contig959 31517 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1258:76906_1:N:0:CGATGT Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9588:78086_1:N:0:CGATGT Contig488526 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8969:78642_1:N:0:CGATGT Contig77931 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9582:78548_1:N:0:CGATGT Contig124743 837 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15387:79027_1:N:0:CGATGT Contig252652 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13410:81537_1:N:0:CGATGT Contig428479 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8708:82430_1:Y:0:CGATGT Contig230349 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3063:82882_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3864:84145_1:N:0:CGATGT Contig382561 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16330:84308_1:N:0:CGATGT Contig634646 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8338:84791_1:Y:0:CGATGT Contig90138 12435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10009:84846_1:N:0:CGATGT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15833:84765_1:N:0:CGATGT Contig306873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10678:85422_1:N:0:CGATGT Contig346227 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17218:86880_1:N:0:CGATGT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12370:87539_1:N:0:CGATGT Contig365270 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6629:87755_1:N:0:CGATGT Contig192152 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15156:89685_1:N:0:CGATGT Contig196675 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17183:90731_1:N:0:CGATGT Contig281343 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3900:92351_1:N:0:CGATGT Contig376677 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4569:92357_1:N:0:CGATGT Contig554323 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7624:93490_1:N:0:CGATGT Contig449590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17591:94877_1:N:0:CGATGT Contig468243 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11117:95624_1:N:0:CGATGT Contig318114 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17125:96297_1:N:0:CGATGT Contig279590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9941:97127_1:N:0:CGATGT Contig365270 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11936:97040_1:N:0:CGATGT Contig50266 344 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20781:99010_1:N:0:CGATGT Contig692217 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18603:5148_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13067:5862_1:N:0:CGATGT Contig56830 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12668:6972_1:Y:0:CGATGT Contig286856 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7513:7668_1:N:0:CGATGT Contig62282 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15082:7552_1:N:0:CGATGT Contig145347 9011 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14977:10256_1:N:0:CGATGT Contig31720 1305 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4609:11958_1:N:0:CGATGT Contig122714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6714:12341_1:N:0:CGATGT Contig10533 4799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9438:12788_1:N:0:CGATGT Contig536195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2253:13018_1:N:0:CGATGT Contig44931 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11263:13172_1:Y:0:CGATGT Contig31352 3336 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20287:13103_1:N:0:CGATGT Contig240999 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17673:16317_1:N:0:CGATGT Contig98714 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15724:17238_1:N:0:CGATGT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5964:19063_1:N:0:CGATGT Contig598919 230 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3626:21168_1:N:0:CGATGT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2475:21360_1:N:0:CGATGT Contig34929 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4569:22432_1:N:0:CGATGT Contig206689 1070 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13667:22904_1:N:0:CGATGT Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2065:24992_1:N:0:CGATGT Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14538:25386_1:N:0:CGATGT Contig602782 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17678:26334_1:N:0:CGATGT Contig40531 13666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4488:26684_1:N:0:CGATGT Contig676481 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16245:27160_1:N:0:CGATGT Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15935:28580_1:N:0:CGATGT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8988:30503_1:N:0:CGATGT Contig262865 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17798:30937_1:N:0:CGATGT Contig202307 669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15053:33423_1:N:0:CGATGT Contig451651 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14237:34774_1:N:0:CGATGT Contig17247 6830 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11184:36631_1:Y:0:CGATGT Contig107065 3092 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15017:39323_1:N:0:CGATGT Contig23431 10903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3690:39501_1:N:0:CGATGT Contig391011 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19249:39602_1:N:0:CGATGT Contig63317 22487 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6666:41661_1:N:0:CGATGT Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8688:42449_1:N:0:CGATGT Contig115685 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19713:42961_1:N:0:CGATGT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3962:43516_1:N:0:CGATGT Contig638128 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13873:45721_1:N:0:CGATGT Contig176350 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6013:45930_1:N:0:CGATGT Contig292396 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17900:45943_1:N:0:CGATGT Contig361422 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6540:46043_1:N:0:CGATGT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20928:46014_1:N:0:CGATGT Contig596466 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6849:46606_1:N:0:CGATGT Contig510263 224 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13451:46939_1:N:0:CGATGT Contig55329 1195 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4091:47073_1:N:0:CGATGT Contig188773 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5540:48067_1:N:0:CGATGT Contig13994 528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5538:50378_1:N:0:CGATGT Contig452074 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15735:51925_1:N:0:CGATGT Contig676380 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3450:52408_1:N:0:CGATGT Contig234718 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3867:52557_1:N:0:CGATGT Contig125524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14553:52596_1:N:0:CGATGT Contig410837 280 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9697:53844_1:N:0:CGATGT Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10653:56708_1:N:0:CGATGT Contig515222 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4936:56981_1:N:0:CGATGT Contig414714 383 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9332:56903_1:N:0:CGATGT Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18377:57760_1:N:0:CGATGT Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12381:59431_1:N:0:CGATGT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13107:62108_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13851:62393_1:N:0:CGATGT Contig490865 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8837:63226_1:N:0:CGATGT Contig150257 2535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18983:63775_1:Y:0:CGATGT Contig117725 1221 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4216:66925_1:N:0:CGATGT Contig31824 64334 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12261:67051_1:N:0:CGATGT Contig159556 630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9175:68456_1:N:0:CGATGT Contig358108 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14642:69228_1:N:0:CGATGT Contig377908 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4062:70641_1:N:0:CGATGT Contig117986 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13914:70666_1:N:0:CGATGT Contig643075 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7930:70825_1:Y:0:CGATGT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8242:71231_1:N:0:CGATGT Contig639010 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20042:71918_1:Y:0:CGATGT Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13080:72197_1:Y:0:CGATGT Contig108516 2834 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6593:75810_1:N:0:CGATGT Contig247802 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2401:77192_1:N:0:CGATGT Contig71471 10617 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2874:78550_1:N:0:CGATGT Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4093:82257_1:Y:0:CGATGT Contig371429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3742:82693_1:N:0:CGATGT Contig76445 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10114:83243_1:N:0:CGATGT Contig456829 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2632:84985_1:N:0:CGATGT Contig342406 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5231:85553_1:Y:0:CGATGT Contig31231 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16027:86431_1:N:0:CGATGT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9704:87494_1:N:0:CGATGT Contig41951 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6550:88282_1:N:0:CGATGT Contig76322 6598 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3809:88664_1:N:0:CGATGT Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17930:89100_1:N:0:CGATGT Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8850:90560_1:Y:0:CGATGT Contig198796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7995:93686_1:Y:0:CGATGT Contig81045 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14717:93814_1:N:0:CGATGT Contig108850 971 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18466:94252_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20859:95684_1:N:0:CGATGT Contig254749 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11856:97926_1:N:0:CGATGT Contig379605 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5009:99293_1:N:0:CGATGT Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16181:99424_1:N:0:CGATGT Contig314765 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16863:100278_1:N:0:CGATGT Contig165758 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14804:3017_1:N:0:CGATGT Contig184373 823 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8052:3994_1:N:0:CGATGT Contig59068 6858 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16733:4432_1:N:0:CGATGT Contig31142 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4894:6417_1:N:0:CGATGT Contig365732 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17599:7181_1:Y:0:CGATGT Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3287:8099_1:N:0:CGATGT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19345:10444_1:N:0:CGATGT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16027:11272_1:N:0:CGATGT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20700:11718_1:N:0:CGATGT Contig67900 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12776:11923_1:N:0:CGATGT Contig92500 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15749:12154_1:N:0:CGATGT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8750:13500_1:N:0:CGATGT Contig17319 4630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15579:15135_1:Y:0:CGATGT Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1347:17677_1:N:0:CGATGT Contig131321 1203 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11573:17635_1:N:0:CGATGT Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4084:19312_1:N:0:CGATGT Contig58165 2670 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16046:19718_1:N:0:CGATGT Contig606897 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16624:20253_1:N:0:CGATGT Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12825:20802_1:N:0:CGATGT Contig515112 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3819:21481_1:N:0:CGATGT Contig216900 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11184:21447_1:N:0:CGATGT Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13386:21557_1:N:0:CGATGT Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7085:22045_1:N:0:CGATGT Contig76446 920 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11099:22597_1:N:0:CGATGT Contig159046 408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5064:22933_1:Y:0:CGATGT Contig32104 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17235:24057_1:Y:0:CGATGT Contig4498 13842 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14451:24932_1:N:0:CGATGT Contig412630 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18323:25122_1:N:0:CGATGT Contig476874 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1405:25601_1:N:0:CGATGT Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14280:27069_1:N:0:CGATGT Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7548:27983_1:N:0:CGATGT Contig103678 2398 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7879:28235_1:N:0:CGATGT Contig528184 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11111:28244_1:N:0:CGATGT Contig175337 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2990:30892_1:N:0:CGATGT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16839:30922_1:N:0:CGATGT Contig93734 7001 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19209:31802_1:N:0:CGATGT Contig274314 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9751:36265_1:Y:0:CGATGT Contig285823 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2817:36739_1:N:0:CGATGT Contig187744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7837:37449_1:Y:0:CGATGT Contig633970 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14956:38196_1:N:0:CGATGT Contig234001 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1241:39338_1:Y:0:CGATGT Contig188781 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12397:39566_1:N:0:CGATGT Contig314833 156 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15665:40013_1:N:0:CGATGT Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20298:40300_1:N:0:CGATGT Contig57738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1818:40669_1:N:0:CGATGT Contig557232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1526:41873_1:Y:0:CGATGT Contig206099 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9742:42645_1:N:0:CGATGT Contig22197 6039 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9967:43636_1:N:0:CGATGT Contig584577 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6255:44177_1:N:0:CGATGT Contig20864 1692 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15529:44172_1:N:0:CGATGT Contig468108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16787:44421_1:N:0:CGATGT Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10274:44539_1:N:0:CGATGT Contig108516 2836 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20268:45963_1:N:0:CGATGT Contig203707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5491:46216_1:Y:0:CGATGT Contig384576 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17713:47339_1:N:0:CGATGT Contig61012 1129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20629:48622_1:N:0:CGATGT Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21159:50567_1:N:0:CGATGT Contig45915 1786 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11109:51339_1:N:0:CGATGT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13384:51349_1:N:0:CGATGT Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4608:51748_1:N:0:CGATGT Contig66311 4540 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7502:52276_1:N:0:CGATGT Contig50825 6660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20802:53082_1:N:0:CGATGT Contig357068 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15101:53535_1:Y:0:CGATGT Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5623:55151_1:Y:0:CTATGT Contig103001 2539 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1970:55946_1:N:0:CGATGT Contig568135 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17458:55912_1:N:0:CGATGT Contig7472 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10012:57022_1:N:0:CGATGT Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5562:58327_1:Y:0:CGATGT Contig447502 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5351:59302_1:N:0:CGATGT Contig504245 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17809:59347_1:N:0:CGATGT Contig1321 23578 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20513:62676_1:N:0:CGATGT Contig581536 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3432:62773_1:N:0:CGATGT Contig165074 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17246:64761_1:N:0:CGATGT Contig673976 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5706:65429_1:N:0:CGATGT Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6947:65446_1:N:0:CGATGT Contig89004 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10205:67525_1:N:0:CGATGT Contig693162 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6994:70484_1:N:0:CGATGT Contig401010 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18031:70360_1:N:0:CGATGT Contig71009 10441 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12904:70731_1:N:0:CGATGT Contig452550 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17898:71004_1:N:0:CGATGT Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5007:71280_1:N:0:CGATGT Contig257690 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7286:74673_1:N:0:CGATGT Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10481:75225_1:N:0:CGATGT Contig289914 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17479:75872_1:N:0:CGATGT Contig656155 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15973:76748_1:N:0:CGATGT Contig195163 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18624:76896_1:N:0:CGATGT Contig290065 271 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16872:78423_1:N:0:CGATGT Contig582404 986 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9298:79256_1:N:0:CGATGT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16113:80427_1:Y:0:CGATGT Contig115061 4196 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15493:80890_1:N:0:CGATGT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3609:81772_1:N:0:CGATGT Contig236888 234 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20967:82121_1:N:0:CGATGT Contig35646 343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20030:84184_1:N:0:CGATGT Contig632348 158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16203:85170_1:N:0:CGATGT Contig252813 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15823:86513_1:N:0:CGATGT Contig141964 559 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15464:89714_1:Y:0:CGATGT Contig61033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8678:90498_1:N:0:CGATGT Contig9576 780 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19679:90702_1:N:0:CGATGT Contig385204 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20694:90531_1:N:0:CGATGT Contig583422 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5104:90870_1:N:0:CGATGT Contig237295 157 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12557:90956_1:N:0:CGATGT Contig126104 1464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17949:91670_1:N:0:CGATGT Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4401:95046_1:N:0:CGATGT Contig117725 1221 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7717:95177_1:N:0:CGATGT Contig601446 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21018:95156_1:N:0:CGATGT Contig666352 287 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10281:95371_1:N:0:CGATGT Contig37231 285 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8054:97131_1:N:0:CGATGT Contig639754 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17532:97391_1:N:0:CGATGT Contig685730 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11832:97779_1:N:0:CGATGT Contig520490 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13365:100095_1:N:0:CGATGT Contig244615 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16978:3213_1:Y:0:CGATGT Contig530932 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6130:3396_1:N:0:CGATGT Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16715:5098_1:N:0:CGATGT Contig55058 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18895:5118_1:N:0:CGATGT Contig504386 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18565:6312_1:N:0:CGATGT Contig359224 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11298:6804_1:N:0:CGATGT Contig189293 1003 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8726:7382_1:N:0:CGATGT Contig552602 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13669:8076_1:N:0:CGATGT Contig587871 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20504:10178_1:N:0:CGATGT Contig196160 671 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5338:10518_1:N:0:CGATGT Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14751:11641_1:N:0:CGATGT Contig401557 188 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13105:11874_1:N:0:CGATGT Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15283:12935_1:N:0:CGATGT Contig6115 9117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2594:13584_1:N:0:CGATGT Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16730:14331_1:N:0:CGATGT Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6396:15754_1:N:0:CGATGT Contig495287 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16627:15795_1:N:0:CGATGT Contig51176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13373:16164_1:N:0:CGATGT Contig108516 2834 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15244:16521_1:N:0:CGATGT Contig394405 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16893:16969_1:N:0:CGATGT Contig165870 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4703:18743_1:Y:0:CGATGT Contig111909 873 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15451:19081_1:N:0:CGATGT Contig315264 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13489:22186_1:N:0:CGATGT Contig413770 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13458:22462_1:N:0:CGATGT Contig45395 31219 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1348:26505_1:N:0:CGATGT Contig134324 1 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 688162 (68.82%) aligned 0 times 127275 (12.73%) aligned exactly 1 time 184563 (18.46%) aligned >1 times 31.18% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 634024 (63.40%) aligned 0 times 137277 (13.73%) aligned exactly 1 time 228699 (22.87%) aligned >1 times 36.60% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 634645 (63.46%) aligned 0 times 137334 (13.73%) aligned exactly 1 time 228021 (22.80%) aligned >1 times 36.54% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 688375 (68.84%) aligned 0 times 127334 (12.73%) aligned exactly 1 time 184291 (18.43%) aligned >1 times 31.16% overall alignment rate Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16797:27057_1:N:0:CGATGT Contig183189 607 Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_2_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_2_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 341336 Mapping efficiency: 34.1% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2055867 Total methylated C's in CpG context: 266564 Total methylated C's in CHG context: 8870 Total methylated C's in CHH context: 107264 Total methylated C's in Unknown context: 60 Total unmethylated C's in CpG context: 53007 Total unmethylated C's in CHG context: 419223 Total unmethylated C's in CHH context: 1200939 Total unmethylated C's in Unknown context: 349 C methylated in CpG context: 83.4% C methylated in CHG context: 2.1% C methylated in CHH context: 8.2% C methylated in Unknown context (CN or CHN): 14.7% Bismark completed in 0d 6h 25m 10s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_3_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_3_s456_trimmed.fq.gz to zr1394_3_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_3_s456_trimmed.fq.gz to zr1394_3_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_3_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_3_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_3_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_3_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1217:2194_1:N:0:TTAGGC 4 * 0 0 * * 0 0 TTAATTTTTTTAAAATATTTTATTTTATTTA FFF>> Writing bisulfite mapping results to zr1394_3_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_3_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4674:2839_1:N:0:TTAGGC Contig125523 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4801:3763_1:Y:0:TTAGGC Contig116318 1706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14554:4758_1:N:0:TTAGGC Contig90138 12435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15465:6641_1:N:0:TTAGGC Contig87676 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12352:8747_1:N:0:TTAGGC Contig25082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4773:10457_1:N:0:TTAGGC Contig451272 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13156:10885_1:N:0:TTAGGC Contig119436 804 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4030:11159_1:N:0:TTAGGC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14516:11264_1:N:0:TTAGGC Contig150257 2535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4321:12649_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19694:12657_1:Y:0:TTAGGC Contig594549 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11623:14327_1:N:0:TTAGGC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7942:15591_1:N:0:TTAGGC Contig493401 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14668:16437_1:N:0:TTAGGC Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7531:18415_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17507:18327_1:N:0:TTAGGC Contig49590 23320 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10679:19550_1:N:0:TTAGGC Contig2968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12120:20340_1:Y:0:TTGGGC Contig492722 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14143:20837_1:N:0:TTAGGC Contig67161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7772:21727_1:Y:0:TTAGGC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14510:23518_1:N:0:TTAGGC Contig72092 17019 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7503:25502_1:N:0:TTAGGC Contig212284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18129:25664_1:N:0:TTAGGC Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17827:26455_1:N:0:TTAGGC Contig49419 2123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11588:26683_1:N:0:TTAGGC Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18649:27285_1:N:0:TTAGGC Contig447619 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15928:28447_1:N:0:TTAGGC Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8798:28952_1:N:0:TTAGGC Contig21483 8466 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2869:30021_1:N:0:TTAGGC Contig442804 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19757:31437_1:N:0:TTAGGC Contig9424 2289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2231:31798_1:N:0:TTAGGC Contig7277 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12803:32160_1:N:0:TTAGGC Contig39050 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15034:32408_1:N:0:TTAGGC Contig63016 3056 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7287:32871_1:N:0:TTAGGC Contig615087 219 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9770:34757_1:Y:0:TTAGGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19435:34895_1:N:0:TTAGGC Contig282460 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20778:35612_1:N:0:TTAGGC Contig288901 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5306:37026_1:N:0:TTAGGC Contig1096 33919 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3860:37586_1:N:0:TTAGGC Contig211162 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7582:37613_1:N:0:TTAGGC Contig599214 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18304:37889_1:N:0:TTAGGC Contig556868 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1228:39745_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8966:41587_1:N:0:TTAGGC Contig207029 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4514:42053_1:N:0:TTAGGC Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9078:42407_1:N:0:TTAGGC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15242:42886_1:N:0:TTAGGC Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3401:43491_1:N:0:TTAGGC Contig7770 2455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13622:43477_1:N:0:TTAGGC Contig346782 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6604:43634_1:N:0:TTAGGC Contig188045 405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1372:45550_1:N:0:TTAGGC Contig276101 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14879:47255_1:N:0:TTAGGC Contig310701 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19062:48007_1:Y:0:TTAGGC Contig130735 14291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2972:48358_1:N:0:TTAGGC Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11132:48412_1:N:0:TTAGGC Contig592220 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13128:48576_1:N:0:TTAGGC Contig161696 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13054:48950_1:N:0:TTAGGC Contig685730 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9422:49559_1:N:0:TTAGGC Contig182325 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15794:51233_1:N:0:TTAGGC Contig486481 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5082:52251_1:Y:0:TTAGGC Contig569636 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10915:54340_1:N:0:TTAGGC Contig637087 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2045:55291_1:N:0:TTAGGC Contig676810 148 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11151:56201_1:N:0:TTAGGC Contig256548 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11266:57315_1:N:0:TTAGGC Contig92081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16249:58238_1:N:0:TTAGGC Contig382984 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2325:59143_1:N:0:TTAGGC Contig343139 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6079:59293_1:N:0:TTAGGC Contig1471 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1981:61091_1:N:0:TTAGGC Contig212308 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9387:62351_1:N:0:TTAGGC Contig55184 4566 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16293:66251_1:N:0:TTAGGC Contig620719 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21162:67209_1:N:0:TTAGGC Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8641:67339_1:N:0:TTAGGC Contig503719 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11227:69167_1:N:0:TTAGGC Contig22640 4673 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10980:69621_1:Y:0:TTAGGC Contig515784 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18527:70512_1:N:0:TTAGGC Contig36268 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20241:70597_1:N:0:TTAGGC Contig71496 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14934:70886_1:N:0:TTAGGC Contig272596 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2788:71081_1:N:0:TTAGGC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18399:72338_1:N:0:TTAGGC Contig582404 985 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19935:72493_1:N:0:TTAGGC Contig518346 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4096:73971_1:N:0:TTAGGC Contig636316 276 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15504:75280_1:Y:0:TTAGGC Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15540:77260_1:N:0:TTAGGC Contig19201 17235 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15743:77414_1:N:0:TTAGGC Contig25186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4341:78809_1:Y:0:TTAGGC Contig83134 3351 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14436:80274_1:N:0:TTAGGC Contig692713 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8850:80548_1:N:0:TTAGGC Contig80485 8444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17869:80605_1:N:0:TTAGGC Contig302563 4026 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9568:80762_1:N:0:TTAGGC Contig177267 396 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14809:80993_1:N:0:TTAGGC Contig385856 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8584:81199_1:N:0:TTAGGC Contig306337 163 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6477:82559_1:N:0:TTAGGC Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12155:83478_1:N:0:TTAGGC Contig198158 463 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18014:83594_1:N:0:TTAGGC Contig696644 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10138:83774_1:N:0:TTAGGC Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8444:84265_1:N:0:TTAGGC Contig679032 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17038:86403_1:Y:0:TTAGGC Contig363256 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17003:87450_1:N:0:TTAGGC Contig446157 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18348:87503_1:N:0:TTAGGC Contig282368 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17183:89829_1:N:0:TTAGGC Contig397818 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18903:90808_1:N:0:TTAGGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13958:91163_1:N:0:TTAGGC Contig68542 9267 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2800:91672_1:N:0:TTAGGC Contig50100 6930 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14252:91528_1:N:0:TTAGGC Contig521469 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8291:93366_1:N:0:TTAGGC Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2362:93862_1:N:0:TTAGGC Contig341874 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4547:95141_1:N:0:TTAGGC Contig541884 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8991:95785_1:N:0:TTAGGC Contig346880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4103:96545_1:N:0:TTAGGC Contig97683 1227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3703:97744_1:N:0:TTAGGC Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13620:97852_1:Y:0:TTAGGC Contig12186 352 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20078:97786_1:N:0:TTAGGC Contig670361 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10634:98369_1:N:0:TTAGGC Contig397735 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10674:99384_1:N:0:TTAGGC Contig630646 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18353:99435_1:Y:0:TTAGGT Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3047:3760_1:N:0:TTAGGC Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5092:4398_1:N:0:TTAGGC Contig565223 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6836:6490_1:N:0:TTAGGC Contig669416 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8276:7497_1:N:0:TTAGGC Contig79441 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14552:7716_1:Y:0:TTAGGC Contig63324 16043 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17038:7807_1:N:0:TTAGGC Contig107128 1527 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14323:8036_1:N:0:TTAGGC Contig112816 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4650:9798_1:Y:0:TTAGGC Contig524739 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20681:10359_1:N:0:TTAGGC Contig31494 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18962:10597_1:N:0:TTAGGC Contig473294 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9884:10974_1:Y:0:TTAGGC Contig289124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13597:12564_1:N:0:TTAGGC Contig164256 456 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6000:13203_1:N:0:TTAGGC Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10713:13274_1:N:0:TTAGGC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1893:14574_1:N:0:TTAGGC Contig131570 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2121:15592_1:N:0:TTCGGC Contig62529 31644 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12036:18749_1:N:0:TTAGGC Contig384118 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17419:18593_1:N:0:TTAGGC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8931:19614_1:Y:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2199:20327_1:N:0:TTAGGC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15112:20610_1:N:0:TTAGGC Contig483055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16666:22320_1:N:0:TTAGGC Contig285294 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2986:25491_1:N:0:TTAGGC Contig333214 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18528:26130_1:N:0:TTAGGC Contig423604 128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11128:26888_1:N:0:TTAGGC Contig125523 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12094:27116_1:N:0:TTAGGC Contig601866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18219:27054_1:N:0:TTAGGC Contig684333 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12909:27356_1:Y:0:TTAGGC Contig267930 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5971:28468_1:N:0:TTAGGC Contig415780 1028 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14751:28981_1:N:0:TTAGGC Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2641:29035_1:N:0:TTAGGC Contig12418 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11383:29671_1:N:0:TTAGGC Contig492902 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13633:29661_1:N:0:TTAGGC Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8739:29765_1:N:0:TTAGGC Contig206979 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11460:29756_1:N:0:TTAGGC Contig416676 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11403:29915_1:N:0:TTAGGC Contig2280 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17044:29852_1:N:0:TTAGGC Contig348877 323 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6295:30220_1:N:0:TTAGGC Contig7715 7901 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16773:31003_1:Y:0:TTAGGC Contig359360 150 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2570:31285_1:N:0:TTAGGC Contig641162 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2878:31375_1:N:0:TTAGGC Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1362:31777_1:Y:0:TTTGGC Contig170155 729 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13803:32661_1:N:0:TTAGGC Contig49997 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13230:34155_1:N:0:TTAGGC Contig385733 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15781:34622_1:N:0:TTATGC Contig242060 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18088:34808_1:N:0:TTAGGC Contig63437 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20871:36111_1:N:0:TTAGGC Contig187744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5969:37960_1:N:0:TTAGGC Contig611551 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15110:38117_1:N:0:TTAGGC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14390:38887_1:N:0:TTAGGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4514:39082_1:Y:0:TTAGGC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14788:39086_1:Y:0:TTAGGC Contig16421 10716 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11520:39499_1:N:0:TTAGGC Contig24332 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3220:42381_1:N:0:TTAGGC Contig241723 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17285:42981_1:N:0:TTAGGC Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17877:43322_1:N:0:TTAGGC Contig647634 148 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3852:44462_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20686:49305_1:Y:0:TTATGC Contig444514 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12150:51546_1:N:0:TTAGGC Contig391068 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11701:52392_1:N:0:TTAGGC Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5171:53062_1:N:0:TTAGGC Contig685903 184 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12325:53116_1:N:0:TTAGGC Contig402640 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18212:53251_1:Y:0:TTAGGC Contig374868 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19705:54291_1:N:0:TTAGGC Contig485259 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11278:55785_1:N:0:TTAGGC Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7168:56632_1:N:0:TTAGGC Contig52709 3815 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19962:56522_1:N:0:TTAGGC Contig112762 874 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20432:56534_1:N:0:TTAGGC Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20509:56977_1:N:0:TTAGGC Contig207905 6377 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2675:60148_1:N:0:TTAGGC Contig48160 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1233:60455_1:N:0:TTAGGC Contig69591 6011 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13826:60649_1:N:0:TTAGGC Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9216:61238_1:N:0:TTAGGC Contig158704 1090 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12770:61228_1:Y:0:TTAGGC Contig74343 15537 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7125:62744_1:Y:0:TTAGGC Contig470670 677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4293:63042_1:N:0:TTAGGC Contig350249 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7726:63905_1:N:0:TTAGGC Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11094:63939_1:N:0:TTAGGC Contig112006 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5530:66227_1:N:0:TTGGGC Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17839:68162_1:N:0:TTAGGC Contig297982 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2674:68368_1:N:0:TTAGGC Contig212168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6167:68278_1:N:0:TTAGGC Contig57360 6454 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19573:68641_1:N:0:TTAGGC Contig663426 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4575:68856_1:N:0:TTAGGC Contig468213 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19160:69969_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14293:70653_1:N:0:TTAGGC Contig57756 1003 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12902:74277_1:Y:0:TTAGGC Contig694922 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3780:76618_1:N:0:TTAGGC Contig657966 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14269:76755_1:N:0:TTAGGC Contig568861 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20992:76940_1:Y:0:TTAGGC Contig61494 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7400:79937_1:N:0:TTAGGC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20261:81486_1:N:0:TTAGGC Contig368219 201 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8507:82454_1:N:0:TTAGGC Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18044:82705_1:N:0:TTAGGC Contig81020 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13651:82895_1:N:0:TTAGGC Contig212435 1368 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19697:83980_1:N:0:TTAGGC Contig518189 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3792:84108_1:N:0:TTAGGC Contig279327 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2965:87557_1:N:0:TTAGGC Contig400534 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4650:89723_1:N:0:TTAGGC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17932:94353_1:N:0:TTAGGC Contig492133 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13049:95140_1:N:0:TTAGGC Contig118588 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11052:96162_1:N:0:TTAGGC Contig338428 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10721:96708_1:N:0:TTAGGC Contig12829 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8295:96759_1:N:0:TTAGGC Contig105011 2691 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4167:98060_1:N:0:TTAGGC Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11856:6801_1:N:0:TTAGGC Contig240182 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19572:7987_1:N:0:TTAGGC Contig16579 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3952:8333_1:N:0:TTAGGC Contig356767 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19829:8782_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17790:9304_1:N:0:TTAGGC Contig14819 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1866:9688_1:N:0:TTAGGC Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7460:10017_1:Y:0:TTATGC Contig33770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15878:10612_1:N:0:TTAGGC Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10757:11438_1:N:0:TTAGGC Contig693243 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15366:11728_1:N:0:TTAGGC Contig382081 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14461:12639_1:N:0:TTAGGC Contig4032 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3155:14098_1:N:0:TTAGGC Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3169:14512_1:N:0:TTAGGC Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5812:15598_1:N:0:TTAGGC Contig426410 308 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5346:16522_1:N:0:TTAGGC Contig534337 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17873:17653_1:N:0:TTAGGC Contig278967 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3123:17975_1:N:0:TTAGGC Contig643689 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14188:18332_1:N:0:TTAGGC Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19065:19164_1:N:0:TTAGGC Contig443318 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1546:20037_1:N:0:TTAGGC Contig128926 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14567:20933_1:N:0:TTAGGC Contig407418 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21292:21792_1:N:0:TTAGGC Contig524000 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13784:22863_1:N:0:TTAGGC Contig67586 21645 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21326:23237_1:N:0:TTAGGC Contig430578 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9642:25404_1:N:0:TTAGGC Contig71524 7732 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6079:25679_1:N:0:TTAGGC Contig467553 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12479:27932_1:N:0:TTAGGC Contig44723 10855 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13729:29970_1:N:0:TTAGGC Contig88003 2022 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4669:30641_1:N:0:TTAGGC Contig449793 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17165:30820_1:Y:0:TTAGGC Contig202510 793 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15567:31505_1:N:0:TTAGGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11913:32127_1:N:0:TTAGGC Contig247530 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20557:32690_1:N:0:TTAGGC Contig35251 28227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8085:33636_1:N:0:TTAGGC Contig25966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5584:33764_1:N:0:TTAGGC Contig512480 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15997:34195_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15212:34483_1:N:0:TTAGGC Contig515337 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21047:34530_1:N:0:TTAGGC Contig368022 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8821:35685_1:N:0:TTAGGC Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17540:38350_1:N:0:TTAGGC Contig20834 2171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4708:38852_1:N:0:TTAGGC Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5623:41144_1:N:0:TTAGGC Contig180030 1382 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5263:41994_1:N:0:TTAGGC Contig127387 3236 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17018:41902_1:N:0:TTAGGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9335:43236_1:N:0:TTAGGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18739:43200_1:N:0:TTAGGC Contig74607 3435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12379:43361_1:Y:0:TTAGGC Contig615489 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18150:43323_1:N:0:TTAGGC Contig541530 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6811:44038_1:N:0:TTAGGC Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8617:44245_1:Y:0:TTAGGC Contig38042 3697 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14509:44378_1:N:0:TTAGGC Contig91175 2437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9192:45476_1:N:0:TTAGGC Contig332457 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16472:45744_1:N:0:TTAGGC Contig308706 266 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10826:48117_1:N:0:TTAGGC Contig115198 792 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19676:48753_1:N:0:TTAGGC Contig39581 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1527:49680_1:N:0:TTAGGC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14106:49621_1:N:0:TTAGGC Contig64591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8648:49999_1:N:0:TTAGGC Contig21674 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9277:52899_1:N:0:TTAGGC Contig181823 1002 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13174:52983_1:N:0:TTAGGC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14149:53653_1:N:0:TTAGGC Contig106883 2348 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7258:53975_1:N:0:TTAGGC Contig238551 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21271:53907_1:N:0:TTAGGC Contig76998 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14021:54516_1:N:0:TTAGGC Contig188781 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13709:56006_1:N:0:TTAGGC Contig669056 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14669:56510_1:N:0:TTAGGC Contig108013 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8116:58476_1:N:0:TTAGGC Contig50279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13168:59200_1:N:0:TTAGGC Contig649594 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17889:59031_1:N:0:TTAGGC Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20637:59086_1:N:0:TTAGGC Contig656352 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1265:59678_1:N:0:TTAGGC Contig342888 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13212:60344_1:N:0:TTAGGC Contig131043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2790:61540_1:N:0:TTAGGC Contig176386 464 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16159:61619_1:N:0:TTAGGC Contig279881 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3152:62541_1:N:0:TTAGGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6117:62655_1:N:0:TTAGGC Contig668722 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7564:63068_1:N:0:TTAGGC Contig344237 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8791:64133_1:N:0:TTAGGC Contig159919 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6258:64624_1:N:0:TTAGGC Contig285891 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3365:65189_1:N:0:TTAGGC Contig348762 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2637:65514_1:N:0:TTAGGC Contig291553 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16727:65536_1:N:0:TTAGGC Contig216278 390 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2615:66312_1:N:0:TTAGGC Contig457780 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16062:67852_1:N:0:TTAGGC Contig348762 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20858:68588_1:N:0:TTAGGC Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10048:69410_1:N:0:TTAGGC Contig1157 31620 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4408:69818_1:Y:0:TTAGGC Contig114294 1331 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5053:69929_1:N:0:TTAGGC Contig246945 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10078:71554_1:N:0:TTAGGC Contig322052 404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18697:71968_1:Y:0:TTAGGC Contig643192 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19521:72997_1:N:0:TTAGGC Contig266248 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12935:73919_1:N:0:TTAGGC Contig385645 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20665:73810_1:N:0:TTAGGC Contig20374 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12875:76070_1:N:0:TTAGGC Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14093:76674_1:N:0:TTAGGC Contig244678 181 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5423:76851_1:N:0:TTAGGC Contig639246 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8071:79467_1:N:0:TTAGGC Contig292617 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9088:80232_1:N:0:TTAGGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1918:81429_1:Y:0:TTAGGC Contig365277 169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3806:81350_1:N:0:TTAGGC Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7998:82928_1:N:0:TTAGGC Contig449216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15418:83397_1:N:0:TTAGGC Contig360374 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20033:84445_1:Y:0:TTAGGC Contig169755 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11143:85418_1:N:0:TTAGGC Contig300567 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11587:85390_1:Y:0:TTAGGC Contig487247 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8231:85968_1:N:0:TTAGGC Contig573636 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3222:86224_1:Y:0:TTATGC Contig373991 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16239:87594_1:N:0:TTAGGC Contig71923 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3475:89005_1:N:0:TTAGGC Contig322052 404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17337:89341_1:N:0:TTAGGC Contig177033 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21020:89681_1:N:0:TTAGGC Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14360:90442_1:N:0:TTAGGC Contig504192 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2088:92630_1:N:0:TTAGGC Contig399390 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16067:93030_1:N:0:TTAGGC Contig220441 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15961:93319_1:N:0:TTAGGC Contig49687 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11084:94917_1:N:0:TTAGGC Contig131018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19291:95309_1:N:0:TTAGGC Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4969:100312_1:N:0:TTAGGN Contig144803 1421 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14315:2956_1:N:0:TTAGGC Contig101138 15271 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16901:3923_1:Y:0:TTAGGC Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20372:5156_1:N:0:TTAGGC Contig362475 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1385:6844_1:N:0:TTAGGC Contig182413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5581:7324_1:N:0:TTAGGC Contig55633 9952 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9690:7922_1:N:0:TTAGGC Contig174916 5268 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10109:10972_1:N:0:TTAGGC Contig115691 4857 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3021:11009_1:N:0:TTAGGC Contig199175 714 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11940:13606_1:N:0:TTAGGC Contig96738 1298 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7632:13785_1:N:0:TTAGGC Contig87180 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1600:14209_1:N:0:TTAGGC Contig240999 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2828:14166_1:N:0:TTAGGC Contig59734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8318:14833_1:N:0:TTAGGC Contig557247 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8809:15554_1:N:0:TTAGGC Contig492902 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19175:17201_1:N:0:TTAGGC Contig595967 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13882:17583_1:N:0:TTAGGC Contig106883 2343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20636:17675_1:N:0:TTAGGC Contig54040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11979:19003_1:N:0:TTAGGC Contig392020 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2588:19782_1:N:0:TTAGGC Contig613909 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10126:20607_1:N:0:TTAGGC Contig594549 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21039:20554_1:N:0:TTAGGC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2222:21175_1:N:0:TTAGGC Contig348378 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3002:21538_1:N:0:TTAGGC Contig342838 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17862:21718_1:N:0:TTAGGC Contig575589 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3909:23717_1:N:0:TTAGGT Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5191:23518_1:N:0:TTAGGC Contig2496 16444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15534:23868_1:N:0:TTAGGC Contig695047 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19900:23968_1:Y:0:TTAGGC Contig52396 6041 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12168:24943_1:N:0:TTAGGC Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16499:25962_1:N:0:TTAGGC Contig364325 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12758:26627_1:N:0:TTAGGC Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13154:26858_1:N:0:TTAGGC Contig345103 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5013:27544_1:N:0:TTAGGC Contig109565 864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16450:28739_1:N:0:TTAGGC Contig85247 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7038:29256_1:N:0:TTAGGC Contig158909 6457 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19926:29582_1:N:0:TTAGGC Contig189370 709 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4202:30130_1:N:0:TTAGGC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9826:30713_1:N:0:TTAGGC Contig305331 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3025:33432_1:N:0:TTAGGC Contig306106 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5804:33572_1:N:0:TTAGGG Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13039:34054_1:N:0:TTAGGC Contig403299 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15493:34450_1:N:0:TTAGGC Contig12288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3483:35095_1:N:0:TTAGGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5496:35496_1:N:0:TTAGGC Contig145418 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6764:38119_1:N:0:TTAGGC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19110:41725_1:N:0:TTAGGC Contig68900 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14708:41940_1:N:0:TTAGGC Contig13645 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14311:43251_1:N:0:TTAGGC Contig32210 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10727:44171_1:N:0:TTAGGC Contig591708 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9533:45413_1:N:0:TTAGGC Contig54040 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6340:46706_1:Y:0:TTAGGC Contig161718 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19579:46634_1:N:0:TTAGGC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19940:47090_1:N:0:TTAGGC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11599:49011_1:N:0:TTAGGC Contig157282 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10281:49634_1:N:0:TTAGGC Contig359524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12627:50375_1:N:0:TTAGGC Contig89800 7826 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15980:50354_1:N:0:TTAGGC Contig69467 3343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19729:51835_1:N:0:TTAGGC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2960:52366_1:N:0:TTAGGC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5457:52654_1:N:0:TTAGGC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1569:52930_1:N:0:TTAGGC Contig97887 1265 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6401:53967_1:N:0:TTAGGC Contig181399 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9104:55657_1:N:0:TTAGGC Contig558199 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15309:56361_1:N:0:TTAGGC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6321:56503_1:N:0:TTAGGC Contig168579 998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9942:57638_1:N:0:TTAGGC Contig564996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5249:58223_1:N:0:TTAGGG Contig133093 13237 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11486:58691_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20664:59291_1:N:0:TTAGGC Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18311:60494_1:N:0:TTAGGC Contig661824 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7314:60663_1:N:0:TTAGGC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19655:61112_1:N:0:TTAGGC Contig40708 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6466:62247_1:N:0:TTAGGC Contig553399 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12455:62360_1:N:0:TTAGGC Contig59240 9635 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7725:62734_1:N:0:TTAGGC Contig557232 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18893:62977_1:N:0:TTAGGC Contig312918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12738:63479_1:N:0:TTAGGC Contig23431 10903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17381:63937_1:N:0:TTAGGC Contig74698 6929 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11970:64755_1:N:0:TTAGGC Contig106883 2345 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15030:66576_1:N:0:TTAGGC Contig693732 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14983:67814_1:N:0:TTAGGC Contig20442 18468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17938:67935_1:N:0:TTAGGC Contig312918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18472:67757_1:N:0:TTATGC Contig284798 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20974:69102_1:N:0:TTAGGC Contig37235 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4261:69892_1:N:0:TTAGGC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7279:72753_1:N:0:TTAGGC Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7526:73494_1:N:0:TTAGGC Contig687926 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10028:73827_1:N:0:TTAGGC Contig486 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4888:74810_1:N:0:TTAGGC Contig201630 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2769:75986_1:N:0:TTAGGC Contig347393 17157 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7339:76108_1:N:0:TTAGGC Contig91774 2259 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3434:76446_1:N:0:TTAGGC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20863:76757_1:N:0:TTAGGC Contig112256 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8599:77115_1:N:0:TTAGAC Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8973:77718_1:N:0:TTAGGC Contig483882 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15848:77518_1:N:0:TTAGGC Contig51441 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14653:78230_1:N:0:TTAGGC Contig134710 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8875:80068_1:N:0:TTAGGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4026:80328_1:N:0:TTAGGC Contig103546 3000 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9943:80905_1:N:0:TTAGGC Contig277632 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6738:81254_1:N:0:TTAGGC Contig343758 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8319:82271_1:N:0:TTAGGC Contig585966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18826:82390_1:N:0:TTAGGC Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3714:82895_1:N:0:TTAGGC Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12093:84210_1:N:0:TTAGGC Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3452:85921_1:N:0:TTAGGC Contig581004 3563 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12975:86507_1:N:0:TTAGGC Contig633476 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12712:87267_1:N:0:TTAGGC Contig83134 3351 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13989:87605_1:N:0:TTAGGC Contig155461 1001 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10478:88007_1:N:0:TTAGGC Contig597109 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9919:88251_1:N:0:TTAGGC Contig136575 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20915:88647_1:N:0:TTAGGC Contig107186 1331 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13806:90330_1:N:0:TTAGGC Contig189370 707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3055:91245_1:N:0:TTAGGC Contig182413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2114:91433_1:N:0:TTAGGC Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4142:91519_1:N:0:TTAGGC Contig220679 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10892:91893_1:N:0:TTAGGC Contig479442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17973:91858_1:N:0:TTAGGC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5021:92125_1:N:0:TTAGGC Contig60925 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19381:94219_1:N:0:TTAGGC Contig622364 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21224:94151_1:N:0:TTAGGC Contig266530 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12085:95463_1:N:0:TTAGGC Contig498442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1462:95702_1:N:0:TTAGGC Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17903:96038_1:N:0:TTAGGC Contig642705 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19879:96426_1:N:0:TTAGGC Contig654436 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4047:96566_1:N:0:TTAGGC Contig21480 11698 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13861:97597_1:Y:0:TTAGGC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18826:97524_1:N:0:TTAGGC Contig17411 2648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17147:98243_1:N:0:TTAGGC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8669:100040_1:N:0:TTAGGC Contig201331 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6568:2458_1:N:0:TTAGGC Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13453:2763_1:N:0:TTAGGC Contig63056 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6324:3009_1:Y:0:TTAGGT Contig408130 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2704:4190_1:N:0:TTAGGC Contig642744 337 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14353:4217_1:N:0:TTAGGC Contig91752 1445 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18693:4032_1:N:0:TTAGGC Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10030:4679_1:N:0:TTAGGC Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5565:4994_1:N:0:TTAGGC Contig369717 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3522:5131_1:N:0:TTAGGC Contig22595 252 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19340:5644_1:N:0:TTAGGC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2116:6949_1:N:0:TTAGGC Contig410765 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11098:7559_1:N:0:TTAGGC Contig24411 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18231:10520_1:N:0:TTAGGC Contig283433 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7555:11173_1:N:0:TTAGGC Contig133837 849 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7438:12498_1:N:0:TTAGGC Contig244920 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15944:13169_1:N:0:TTAGGC Contig642394 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4702:13464_1:N:0:TTAGGC Contig207987 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2224:15129_1:N:0:TTAGGC Contig274866 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17308:15150_1:N:0:TTAGGC Contig392507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6429:16524_1:N:0:TTAGGC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17509:17329_1:N:0:TTAGGC Contig95126 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15773:17505_1:N:0:TTAGGC Contig638128 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7543:18017_1:Y:0:TTAGGC Contig344706 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15906:18304_1:N:0:TTAGGC Contig200791 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4564:19409_1:N:0:TTAGGC Contig179593 428 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9155:20852_1:N:0:TTAGGC Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13306:20999_1:N:0:TTAGGC Contig641939 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16237:21495_1:N:0:TTAGGC Contig579122 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6334:22561_1:N:0:TTAGGC Contig30881 16618 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9811:23349_1:N:0:TTACGC Contig50451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12016:24753_1:Y:0:TTAGGC Contig60787 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7663:25892_1:N:0:TTAGGC Contig137534 1149 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11601:27363_1:N:0:TTAGGC Contig413388 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19786:28023_1:N:0:TTAGGC Contig458029 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8984:28586_1:N:0:TTAGGC Contig119287 1053 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18972:29775_1:N:0:TTAGGC Contig534659 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7362:30115_1:N:0:TTAGGC Contig240364 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4463:30969_1:N:0:TTAGGC Contig395445 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9530:31006_1:N:0:TTAGGC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6631:35138_1:N:0:TTAGGC Contig585564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12321:37431_1:N:0:TTAGGC Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12599:37525_1:N:0:TTAGGC Contig16217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20539:38860_1:Y:0:TTAGGC Contig294446 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7155:40532_1:N:0:TTAGGC Contig34838 6630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7683:42805_1:N:0:TTAGGC Contig647637 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18169:43160_1:N:0:TTAGGC Contig181909 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13376:43840_1:Y:0:TTAGGC Contig165074 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13427:44107_1:N:0:TTAGGC Contig113982 2123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16194:44042_1:Y:0:TTAGCC Contig332674 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3266:45245_1:N:0:TTAGGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11289:45246_1:N:0:TTAGGC Contig35645 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20865:46725_1:N:0:TTAGGC Contig378309 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5028:48125_1:N:0:TTAGGC Contig608847 179 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11411:48158_1:N:0:TTAGGC Contig59947 3806 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9697:49014_1:N:0:TTAGGC Contig543790 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2381:53249_1:N:0:TTAGGC Contig244033 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15265:53039_1:N:0:TTAGGC Contig270746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21263:53194_1:N:0:TTAGGC Contig11693 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14343:53542_1:N:0:TTAGGC Contig5906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14170:53821_1:N:0:TTAGGC Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1131:55078_1:N:0:TTAGGC Contig49590 23320 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3101:55388_1:N:0:ATAGGC Contig230268 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3869:56073_1:N:0:TTAGGC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4084:56369_1:N:0:TTAGGC Contig441997 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9265:57268_1:N:0:TTAGGC Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16585:60751_1:N:0:GTAGGC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1198:61195_1:N:0:TTAGGC Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18912:61372_1:N:0:TTAGGC Contig5723 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16905:62090_1:N:0:TTAGGC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5691:62301_1:N:0:TTAGGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20617:62613_1:N:0:TTAGGC Contig115958 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7409:64385_1:N:0:TTAGGC Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10579:64384_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14164:65735_1:N:0:TTAGGC Contig161925 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6419:65808_1:Y:0:TTAGGC Contig615792 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16342:68726_1:N:0:TTAGGC Contig571751 6346 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13947:69162_1:Y:0:TTAGGC Contig571751 6345 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5265:69368_1:N:0:TTAGGC Contig673444 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6822:69848_1:N:0:TTAGGC Contig291205 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12818:70111_1:Y:0:TTAGGC Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12803:70395_1:N:0:TTAGGC Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19701:71522_1:N:0:TTAGGC Contig525149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8725:72362_1:N:0:TTAGGC Contig18440 8070 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14820:72961_1:N:0:TTAGGC Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12980:75720_1:N:0:TTAGGC Contig44680 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17455:76906_1:Y:0:TTAGGC Contig575589 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6088:79599_1:N:0:TTAGGC Contig271377 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3541:79834_1:N:0:TTAGGC Contig52055 6455 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6318:80602_1:N:0:TTAGGC Contig76472 4477 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13247:81459_1:N:0:TTAGGC Contig581198 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1256:82039_1:N:0:TTAGGC Contig530378 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13361:82213_1:N:0:TTAGGC Contig119861 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11026:83075_1:N:0:TTAGGC Contig86218 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18080:83592_1:N:0:TTAGGC Contig61485 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6221:83767_1:N:0:TTAGGC Contig390310 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1606:86789_1:N:0:TTAGGC Contig570887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6914:87196_1:N:0:TTAGGC Contig278681 173 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18316:87764_1:N:0:TTAGGC Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8631:88342_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18420:88757_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12180:89730_1:N:0:TTAGGC Contig305331 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3915:89924_1:N:0:TTAGGC Contig444166 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16465:90319_1:N:0:TTAGGC Contig147772 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18930:91615_1:N:0:TTAGGC Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2728:92176_1:N:0:TTAGGC Contig407989 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6179:94089_1:N:0:TTAGGC Contig437990 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14124:94943_1:N:0:TTAGGC Contig1528 18711 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12274:95318_1:N:0:TTAGGC Contig66818 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1841:95857_1:N:0:TTAGGC Contig189293 1003 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14784:96269_1:N:0:TTAGGC Contig610108 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19972:98510_1:N:0:TTAGGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4900:99079_1:N:0:TTAGGC Contig211617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3668:99878_1:N:0:TTAGGC Contig1192 19715 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6293:2436_1:Y:0:TTAGGC Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2275:2519_1:N:0:TTAGGC Contig494679 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5264:4512_1:N:0:TTAGGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19539:5702_1:N:0:TTAGGC Contig437368 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14762:6312_1:Y:0:TTAGGC Contig93292 1448 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16111:6289_1:N:0:TTAGGC Contig403272 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6440:6638_1:N:0:TTAGGC Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14149:8935_1:N:0:TTAGGC Contig31794 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6134:10123_1:N:0:TTAGGC Contig687650 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4137:10729_1:N:0:TTAGGC Contig76265 2306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14655:11690_1:N:0:TTAGGC Contig529037 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13796:12964_1:N:0:TTAGGC Contig108161 5759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4615:14906_1:N:0:TTAGGC Contig497472 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16642:15643_1:N:0:TTAGGC Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15313:15978_1:Y:0:TTAGGC Contig668575 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7193:18153_1:N:0:TTAGGC Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4462:18277_1:N:0:TTAGGC Contig562041 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16647:18654_1:N:0:TTAGGC Contig206298 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4892:18927_1:N:0:TTAGGC Contig514909 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11663:22026_1:N:0:TTAGGC Contig213397 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14441:22458_1:N:0:TTAGGC Contig552823 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13956:23394_1:Y:0:TTAGGC Contig615224 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15494:23280_1:N:0:TTAGGC Contig306111 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13284:23748_1:N:0:TTAGGC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14018:26690_1:N:0:TTAGGC Contig125269 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12860:26887_1:N:0:TTAGGC Contig319215 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5149:27482_1:N:0:TTAGGC Contig64125 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10956:27318_1:N:0:TTAGGC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4139:27950_1:N:0:TTAGGC Contig145462 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8953:29420_1:N:0:TTAGGC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9216:29319_1:N:0:TTAGGC Contig77705 4547 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10638:30941_1:N:0:TTAGGC Contig366146 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19285:32024_1:N:0:TTAGGC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16980:33943_1:N:0:TTAGGC Contig650868 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6739:34250_1:N:0:TTAGGC Contig284658 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19561:36922_1:N:0:TTAGGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7462:38240_1:N:0:TTAGGC Contig462124 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3709:38537_1:N:0:TTAGGC Contig234312 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7087:39971_1:N:0:TTAGGC Contig347393 17157 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13099:40561_1:N:0:TTAGGC Contig470166 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2326:41382_1:Y:0:TTAGGA Contig14819 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14908:43185_1:N:0:TTAGGC Contig60582 6700 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12408:43281_1:N:0:TTAGGC Contig2827 5890 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13420:44020_1:N:0:ATAGGC Contig389486 234 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7344:44293_1:N:0:TTAGGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20607:47220_1:N:0:TTAGGC Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6890:50139_1:N:0:TTAGGC Contig67758 17879 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4688:51112_1:Y:0:TTAGGC Contig230349 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17963:51241_1:Y:0:TTAGGC Contig314528 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14513:51425_1:N:0:TTAGGC Contig492813 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8069:51522_1:N:0:TTAGGC Contig658562 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14432:51741_1:N:0:TTAGGC Contig471944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15213:51843_1:N:0:TTAGGC Contig27881 475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5896:52614_1:N:0:TTAGGC Contig146754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14144:52616_1:N:0:TTAGGC Contig10968 1998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15682:52841_1:Y:0:TTAGGC Contig174710 412 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18366:52795_1:N:0:TTAGGC Contig453741 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3912:54837_1:N:0:TTAGGC Contig38356 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14433:54796_1:N:0:TTAGGC Contig593698 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13617:56262_1:N:0:TTAGGC Contig290479 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15050:57826_1:N:0:TTAGGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5431:58283_1:Y:0:TTAGGC Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6788:58439_1:N:0:TTAGGC Contig482882 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12369:58867_1:N:0:TTAGGC Contig487566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14810:59361_1:N:0:TTAGGC Contig613909 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5344:59525_1:N:0:TTAGGC Contig35645 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19795:60730_1:N:0:TTAGGC Contig160411 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19022:60817_1:N:0:TTAGGC Contig640777 349 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17029:61032_1:N:0:TTAGGC Contig123329 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10458:62685_1:N:0:TTAGGC Contig178123 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1637:63311_1:Y:0:TTAGGC Contig130921 8102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3151:63611_1:N:0:TTAGGC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7271:64332_1:N:0:TTAGGC Contig478966 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12063:64721_1:N:0:TTAGGC Contig271168 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15601:64574_1:N:0:TTAGGC Contig252563 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7739:65164_1:N:0:TTAGGC Contig240480 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8131:65492_1:Y:0:TTAGGC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2025:66666_1:N:0:TTAGGC Contig515898 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14493:66646_1:N:0:TTAGGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3058:67566_1:N:0:TTAGGC Contig297628 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17633:68248_1:N:0:TTAGGC Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20747:69693_1:Y:0:TTAGGC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19232:70505_1:N:0:TTAGGC Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2429:75848_1:N:0:TTAGGC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4168:75864_1:N:0:TTAGGC Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3922:76137_1:Y:0:TTAGGC Contig174710 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15362:76529_1:N:0:TTAGGC Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4221:77602_1:N:0:TTAGGC Contig305331 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18731:77563_1:N:0:TTAGGC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11125:78144_1:N:0:TTAGGC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8436:78387_1:N:0:TTAGGC Contig383229 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20527:79395_1:N:0:TTAGGC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5848:79517_1:N:0:TTAGGC Contig514507 8040 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4551:79983_1:Y:0:TTAGGC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4566:80474_1:N:0:TTAGGC Contig183770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1498:81861_1:Y:0:TTAGGC Contig556038 407 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12598:82526_1:N:0:TTAGGC Contig307007 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6217:83620_1:N:0:TTAGGC Contig200657 839 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16862:84742_1:N:0:TTAGGC Contig204921 2120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10750:85174_1:N:0:TTAAGC Contig151254 4362 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5929:86144_1:N:0:TTAGGC Contig322052 403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16159:86518_1:N:0:TTAGGC Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19266:86587_1:N:0:TTAGGC Contig81914 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15643:87433_1:N:0:TTAGGC Contig393818 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7673:91585_1:N:0:TTAGGC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7815:91736_1:Y:0:TTAGGC Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10090:94778_1:N:0:TTAGGC Contig481499 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4271:95496_1:N:0:TTAGGC Contig5107 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 685475 (68.55%) aligned 0 times 122619 (12.26%) aligned exactly 1 time 191906 (19.19%) aligned >1 times 31.45% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 631702 (63.17%) aligned 0 times 131719 (13.17%) aligned exactly 1 time 236579 (23.66%) aligned >1 times 36.83% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 631073 (63.11%) aligned 0 times 131527 (13.15%) aligned exactly 1 time 237400 (23.74%) aligned >1 times 36.89% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 684828 (68.48%) aligned 0 times 122272 (12.23%) aligned exactly 1 time 192900 (19.29%) aligned >1 times 31.52% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_3_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_3_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 324754 Mapping efficiency: 32.5% Final Cytosine Methylation Report ================================= Total number of C's analysed: 1954924 Total methylated C's in CpG context: 253451 Total methylated C's in CHG context: 8436 Total methylated C's in CHH context: 100817 Total methylated C's in Unknown context: 71 Total unmethylated C's in CpG context: 52123 Total unmethylated C's in CHG context: 381589 Total unmethylated C's in CHH context: 1158508 Total unmethylated C's in Unknown context: 367 C methylated in CpG context: 82.9% C methylated in CHG context: 2.2% C methylated in CHH context: 8.0% C methylated in Unknown context (CN or CHN): 16.2% Bismark completed in 0d 6h 44m 8s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_4_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_4_s456_trimmed.fq.gz to zr1394_4_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_4_s456_trimmed.fq.gz to zr1394_4_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_4_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_4_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_4_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_4_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1202:2117_1:N:0:TGACCA 4 * 0 0 * * 0 0 AAATATTATTTTTGTTTTTTTGATTGAAAAA FFFFFFFFFFFFFFFFFFFFFFFFFB>> Writing bisulfite mapping results to zr1394_4_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_4_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12131:2623_1:N:0:TGACCA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6757:3609_1:N:0:TGACCA Contig474887 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2157:4098_1:Y:0:TTACCA Contig459030 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7220:5191_1:N:0:TGACCA Contig497807 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6934:5852_1:N:0:TGACCA Contig84194 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11846:5853_1:N:0:TGACCA Contig674269 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2811:6106_1:N:0:TGACCA Contig312699 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17059:6772_1:N:0:TGACCA Contig245961 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19234:7307_1:N:0:TGACCA Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17387:8449_1:N:0:TGACCA Contig7679 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19267:9601_1:Y:0:TGACCC Contig139084 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4676:10311_1:N:0:TGACCA Contig212284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14603:12853_1:N:0:TGACCA Contig515784 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12984:13721_1:N:0:TGACCA Contig213739 1424 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9710:14797_1:N:0:TGACCA Contig688140 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5348:17606_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3462:17807_1:N:0:TGACCA Contig53770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9099:21075_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14754:22429_1:N:0:TGACCA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16213:22449_1:N:0:TGACCA Contig578133 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10855:22612_1:N:0:TGACCA Contig324642 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15426:22640_1:N:0:TGACCA Contig561491 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17183:22928_1:Y:0:TGACCA Contig478693 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19805:23011_1:N:0:TGACCT Contig322052 404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7251:23614_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15859:24413_1:N:0:TGACCA Contig144517 874 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11264:25409_1:N:0:TGACCA Contig12538 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11293:25716_1:N:0:TGACCA Contig233165 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4708:26331_1:N:0:TGACCA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13669:26998_1:N:0:TGACCA Contig121986 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18595:26928_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14725:27026_1:N:0:TGACCA Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14453:27664_1:N:0:TGACCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3154:28622_1:N:0:TGACCA Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13870:28968_1:N:0:TGACCA Contig28088 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3976:29166_1:N:0:TGACCA Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13034:31918_1:N:0:TGACCA Contig509745 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1556:33596_1:N:0:TGACCA Contig12253 240 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5504:34697_1:N:0:TGACCA Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11422:35435_1:N:0:TGACCA Contig333214 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2511:38362_1:Y:0:TGACCA Contig50451 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9068:38580_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13786:39455_1:N:0:TGACCA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4505:39641_1:N:0:TGACCA Contig205268 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15865:43388_1:N:0:TGACCA Contig2150 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8917:47968_1:N:0:TGACCA Contig51323 6098 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12123:47901_1:N:0:TGACCA Contig155471 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6805:48659_1:N:0:TGACCA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19271:49262_1:N:0:TGACCA Contig139027 1527 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13381:49716_1:N:0:TGACCA Contig523403 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8119:50953_1:N:0:TGACTA Contig209981 755 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8536:50996_1:N:0:TGACCA Contig30833 31694 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5734:52068_1:N:0:TGACCA Contig328672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14105:52519_1:N:0:TGACCA Contig416040 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4109:53639_1:N:0:TGACCA Contig316898 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9688:55615_1:N:0:TGACCA Contig368699 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11831:58207_1:N:0:TGACCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1912:59037_1:N:0:TGACAA Contig115288 5785 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1428:59554_1:N:0:TGACCA Contig514930 151 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3274:60181_1:N:0:TGACCA Contig87676 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12567:60193_1:N:0:TGACCA Contig248779 998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18192:63049_1:N:0:TAACCA Contig635818 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10381:63795_1:N:0:TGACCA Contig349834 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18866:65032_1:N:0:TGACCA Contig234171 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19176:65160_1:N:0:TGACCA Contig585966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14098:65293_1:N:0:TGACCA Contig98371 5134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10700:66315_1:N:0:TGACCA Contig204622 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20973:71162_1:N:0:TGACCA Contig598483 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5353:73403_1:N:0:TGACCA Contig67667 14899 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6767:74608_1:N:0:TGACCA Contig32598 11683 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2501:75310_1:N:0:TGACCA Contig191809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6050:75733_1:N:0:TGACCA Contig262959 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6796:77727_1:N:0:TGACCA Contig20024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17609:79692_1:N:0:TGACCA Contig676625 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2067:79797_1:N:0:TGACCA Contig317867 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20815:81362_1:N:0:TGACCA Contig604037 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8705:81645_1:N:0:TGACCA Contig266977 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2214:81918_1:N:0:TGACCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17953:82707_1:N:0:TGACCA Contig105202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15163:83457_1:N:0:TGACCA Contig125396 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18568:83292_1:N:0:TGACCA Contig667504 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11424:86463_1:N:0:TGACCA Contig682663 232 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11638:87304_1:N:0:TGACCA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15835:88436_1:N:0:TGACCA Contig131837 3362 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11843:88841_1:N:0:TGACCA Contig220904 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9027:89786_1:N:0:TGACCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6046:90125_1:N:0:TGACCA Contig585453 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11932:91459_1:N:0:TGACCA Contig216978 970 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14358:93137_1:N:0:TGACCA Contig67227 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1845:93719_1:N:0:TGACCA Contig125394 618 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4783:94673_1:N:0:TGACCA Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7608:94711_1:Y:0:TGACGA Contig61775 16861 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20402:95608_1:N:0:TGACCA Contig588443 141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8100:95784_1:N:0:TGACCA Contig504043 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9096:95820_1:N:0:TGACCA Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2262:96166_1:N:0:TGACCA Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11755:97568_1:N:0:TGACCA Contig8246 5836 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14182:97967_1:N:0:TGACCA Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13335:98135_1:Y:0:TTACCA Contig556529 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16353:98566_1:N:0:TGACCA Contig17411 2648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5877:99165_1:N:0:TGACCA Contig179593 428 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7432:100044_1:N:0:TGACCA Contig688178 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8417:3882_1:N:0:TGACCA Contig128909 3374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2173:4035_1:N:0:TGACCA Contig216411 686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2255:5662_1:N:0:TGACCA Contig372194 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2805:6342_1:N:0:TGACCA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11986:7457_1:N:0:TGACCA Contig680866 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5396:8378_1:N:0:TGACCA Contig300129 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12849:8978_1:N:0:TGACCA Contig183189 607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6477:9403_1:N:0:TGACCA Contig11067 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19543:9944_1:N:0:TGACCA Contig79728 2262 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19763:9892_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4593:10026_1:N:0:TGACCA Contig140757 10895 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18547:10893_1:N:0:TGACCA Contig348762 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2537:11021_1:N:0:TGACCA Contig195192 423 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10954:12480_1:N:0:TGACCA Contig322890 229 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7918:13417_1:N:0:TGACCA Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5009:14377_1:N:0:TGACCA Contig143774 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19435:14292_1:N:0:TGACCA Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3520:17131_1:N:0:TGACCA Contig167693 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15718:17512_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7652:18612_1:N:0:TGACCA Contig266596 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19301:19710_1:N:0:TGACCA Contig67821 3137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13847:19985_1:N:0:TGACCA Contig40643 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17375:19944_1:N:0:TGACCA Contig107083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11037:21090_1:N:0:TGACCA Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4787:22120_1:N:0:TGACCA Contig647810 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7947:22772_1:N:0:TGACCA Contig145056 1110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10667:23124_1:N:0:TGACCA Contig322890 229 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3866:23392_1:N:0:TGACCA Contig538429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15697:24009_1:N:0:TGACCA Contig5906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6428:24925_1:N:0:TGACCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15798:25563_1:N:0:TGACCA Contig452291 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5526:25864_1:N:0:TGACCA Contig353335 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14422:28380_1:N:0:TGACCA Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11855:28852_1:N:0:TGACCA Contig191774 1014 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11593:30462_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13138:30426_1:Y:0:TGACCA Contig515112 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3561:30960_1:N:0:TGACCA Contig2815 8967 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19656:31715_1:N:0:TGACCA Contig586520 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16802:31800_1:Y:0:TGACCA Contig215928 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13086:32210_1:N:0:TGACCA Contig426410 308 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7205:32603_1:N:0:TGACCA Contig88838 19542 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18392:32702_1:N:0:TGACCA Contig181318 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4554:33988_1:N:0:TGACCA Contig607317 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4424:34706_1:N:0:TGACCA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15388:34942_1:N:0:TGACCA Contig449928 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7833:35445_1:N:0:TGACCA Contig281767 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20346:37033_1:N:0:TGACCA Contig207029 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18044:38428_1:N:0:TGACCA Contig15919 36524 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20292:38730_1:N:0:TGACCA Contig132111 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4655:38763_1:N:0:TGACCA Contig118838 924 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14406:38964_1:N:0:TGACCA Contig347923 470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8103:40042_1:Y:0:TGACCA Contig128854 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10338:40992_1:N:0:TGACCA Contig503023 642 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17339:44967_1:N:0:AGACCA Contig596096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3417:46019_1:N:0:TGACCA Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20117:46047_1:N:0:TGACCA Contig213425 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2520:47240_1:N:0:TGACCA Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9167:47090_1:N:0:TGACCA Contig468784 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3023:47909_1:N:0:TGACCA Contig556512 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10199:48966_1:Y:0:TGACCA Contig158190 4542 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18142:50062_1:N:0:TGACCA Contig145895 1332 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10072:50695_1:N:0:TGACCA Contig553475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4129:51572_1:N:0:TGACCA Contig355723 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5027:51976_1:N:0:TGACCA Contig93207 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5858:52773_1:N:0:TGACCA Contig599029 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10093:52934_1:N:0:TGACCA Contig413021 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8263:53861_1:N:0:TGACCA Contig63536 9413 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8517:54045_1:N:0:TGACCA Contig372926 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8595:54133_1:N:0:TGACCA Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13508:54868_1:N:0:TGACCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20853:55326_1:N:0:TGACCA Contig81520 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16087:55639_1:N:0:TGACCA Contig334534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7977:55918_1:N:0:TGACCA Contig118490 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11829:57622_1:N:0:TGACCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2464:59396_1:N:0:TGACCA Contig180033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14838:59748_1:N:0:TGACCA Contig333537 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3500:61386_1:N:0:TGACCA Contig543610 144 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10700:61757_1:N:0:TGACCA Contig51851 913 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9334:62073_1:N:0:TGACCA Contig380031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16364:63618_1:N:0:TGACCA Contig469553 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5418:64370_1:N:0:TGACCA Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4016:64648_1:N:0:TGACCA Contig36226 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20099:64835_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5673:65977_1:N:0:TGACCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10371:67487_1:N:0:TGACCA Contig112911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15177:69233_1:N:0:TGACCA Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3460:69997_1:Y:0:TGACCA Contig631683 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10864:70562_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11069:71282_1:N:0:TGACCA Contig52795 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9894:72032_1:N:0:TGACCA Contig179593 430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10600:72213_1:N:0:TGACCA Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8844:73456_1:N:0:TGACCA Contig50880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1624:77807_1:N:0:TGACCA Contig303814 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12581:78803_1:N:0:TGACCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10138:79585_1:N:0:TGACCA Contig25196 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14249:81727_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8522:82221_1:N:0:TGACCA Contig209031 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3536:82794_1:Y:0:TGACCA Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7467:83118_1:N:0:TGACCA Contig25186 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18504:83304_1:N:0:TGACCA Contig551178 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18908:83483_1:N:0:TGACCA Contig525142 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11285:84962_1:N:0:TGACCA Contig85149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18735:84974_1:N:0:TGACCA Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5538:85588_1:N:0:TGACCA Contig201331 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19720:86493_1:N:0:TGACCA Contig13974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20969:87618_1:N:0:TGACCA Contig172569 336 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1656:88290_1:N:0:TGACCA Contig17247 6830 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4966:90790_1:N:0:TGACCA Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13690:91173_1:N:0:TGACCA Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20370:92148_1:N:0:TGACCA Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10368:92409_1:N:0:TGACCA Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18570:92704_1:N:0:TGACCA Contig121226 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19877:92635_1:N:0:TGACCA Contig201341 863 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5885:92775_1:N:0:TGACCA Contig135495 1650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7659:93096_1:N:0:TGACCA Contig157282 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17100:93118_1:N:0:TGACCA Contig8907 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10818:93830_1:N:0:TGACCA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5075:94479_1:N:0:TGACCA Contig468108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19308:95024_1:N:0:TGACCA Contig303313 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4581:96443_1:N:0:TGACCA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13039:96566_1:N:0:TGACCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18896:97659_1:N:0:TGACCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4451:97989_1:N:0:TGACCA Contig217834 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2995:99350_1:N:0:TGACCA Contig435 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9445:100130_1:N:0:TGACCA Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20240:2271_1:N:0:TGACCA Contig113467 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17565:3226_1:N:0:TGACCA Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8664:5502_1:N:0:TGACCA Contig169623 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13839:6422_1:N:0:TGACCA Contig216978 968 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4588:7876_1:N:0:TGACCA Contig323147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20807:8363_1:N:0:TGACCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1223:9570_1:N:0:TGACCA Contig209955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14579:9917_1:N:0:TGACCA Contig207029 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17301:9863_1:N:0:TGACCA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5920:11421_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1919:11863_1:N:0:TGACCA Contig58853 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16513:13402_1:Y:0:TGACCA Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20033:14023_1:N:0:TGACCA Contig362797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20655:14385_1:Y:0:TGACCA Contig524268 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14512:14833_1:N:0:TGACCA Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7150:16243_1:N:0:TGACCA Contig14505 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21069:19417_1:N:0:TGACCA Contig2150 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12799:19718_1:N:0:TGACCA Contig1803 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5154:20851_1:N:0:TGACCA Contig234312 138 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7725:21043_1:N:0:TGACCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15443:21058_1:N:0:TGACCA Contig50279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12255:21965_1:N:0:TGACCA Contig249334 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18276:25073_1:N:0:TGACCA Contig104141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9559:26863_1:N:0:TGACCA Contig403649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3849:28493_1:N:0:TGACCA Contig656878 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10960:28980_1:N:0:TGACCA Contig637253 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13594:29485_1:N:0:TGACCA Contig10599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10137:32417_1:N:0:TGACCA Contig21638 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11343:32924_1:N:0:TGACCA Contig61697 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14248:33428_1:Y:0:TGACCA Contig105229 2956 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17840:33617_1:N:0:TGACCA Contig618782 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19330:33971_1:N:0:TGACCA Contig131068 642 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12702:35958_1:N:0:TGACCA Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3316:36262_1:N:0:TGACCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11876:38040_1:N:0:TGACCA Contig379114 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17371:38729_1:N:0:TGACCA Contig462402 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13349:39746_1:N:0:TGACCA Contig291553 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3134:40384_1:N:0:TGACCA Contig686581 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19407:41390_1:N:0:TGACCA Contig534771 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8683:43863_1:N:0:TGACCA Contig571898 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10999:43831_1:N:0:TGACCA Contig674522 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18915:44940_1:N:0:TGACCA Contig529847 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12900:45123_1:N:0:TGACCA Contig13055 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1571:45796_1:N:0:TGACCA Contig544141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6373:46380_1:N:0:TGACCA Contig243864 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1859:47997_1:N:0:TGACCA Contig43880 6706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12039:47984_1:N:0:TGACCA Contig44839 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6308:48080_1:N:0:TGACCA Contig460854 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8866:48138_1:N:0:TGACCA Contig355712 143 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7888:48643_1:N:0:TGACCA Contig128385 977 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1448:49442_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11172:50649_1:N:0:TGACCA Contig8602 910 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17788:50661_1:N:0:TGACCA Contig437057 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6798:51631_1:N:0:TGACCA Contig48907 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7224:52648_1:N:0:TGACCA Contig65810 2186 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4467:54184_1:N:0:TGACCA Contig471635 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20796:57107_1:N:0:TGACCA Contig16217 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2258:57622_1:N:0:TGACCA Contig498600 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10011:60218_1:N:0:TGACCA Contig53301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10054:61267_1:Y:0:TGACCC Contig8526 1378 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18428:62959_1:N:0:TGACCA Contig151 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14687:64888_1:N:0:TGACCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10326:65541_1:N:0:TGACCA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12957:65703_1:N:0:TGACCA Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20828:67187_1:N:0:TGACCA Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10564:67812_1:N:0:TGACCA Contig158546 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15013:67898_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7200:68199_1:N:0:TGACCA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14046:69626_1:N:0:TGACCA Contig248757 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18631:70422_1:N:0:TGACCA Contig268479 249 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14735:72390_1:N:0:TGACCA Contig568867 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11570:72998_1:N:0:TGACCA Contig13055 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13807:72970_1:N:0:TGACCA Contig323147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20371:73205_1:N:0:TGACCA Contig282820 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5935:73883_1:N:0:TGACCA Contig461720 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8710:74405_1:N:0:TGACCA Contig647810 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8058:75341_1:N:0:TGACCA Contig381756 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16944:75513_1:N:0:TGACCA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21307:77569_1:N:0:TGACCA Contig55760 4188 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5394:77940_1:N:0:TGACCA Contig175398 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10561:78744_1:N:0:TGACCA Contig14774 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15596:79453_1:N:0:TGACCA Contig668257 133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12228:80475_1:N:0:TGACCA Contig247277 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5950:82034_1:Y:0:TGACCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6146:82200_1:N:0:TGACCA Contig248693 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5572:84410_1:N:0:TGACCA Contig117890 6364 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19490:84647_1:N:0:TGACCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4548:85390_1:N:0:TGACCA Contig218024 412 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13279:85258_1:N:0:TGACCA Contig573636 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10949:86031_1:N:0:TGACCA Contig442804 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15224:88486_1:N:0:TGACCA Contig193330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6635:88653_1:N:0:TGACCA Contig193909 282 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15715:90703_1:N:0:TGACCA Contig313451 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18725:92360_1:N:0:TGACCA Contig623039 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19957:96051_1:N:0:TGACCG Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4248:97073_1:N:0:TGACCA Contig57816 5203 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8151:97078_1:N:0:TGACCA Contig364773 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12991:100155_1:Y:0:TGACCA Contig458963 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9418:2544_1:Y:0:TGACCA Contig563986 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12902:5884_1:N:0:TGACCA Contig19435 4327 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18080:6997_1:N:0:TGACCA Contig370898 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3459:7147_1:N:0:TGACCA Contig188839 1223 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7740:7935_1:N:0:TGACCA Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14423:8198_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2476:8420_1:N:0:TGACCA Contig140852 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17373:8362_1:N:0:TGACCA Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11823:8730_1:N:0:TGACCA Contig362985 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16208:10243_1:N:0:TGACCA Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5550:10365_1:N:0:TGACCA Contig213853 1809 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14779:11528_1:N:0:TGACCA Contig9914 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18419:12935_1:N:0:TGACCA Contig6878 3120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10292:14535_1:N:0:TGACCA Contig128909 3374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16158:14620_1:Y:0:TGACCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20505:15129_1:N:0:TGACCA Contig103850 7500 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7001:15359_1:N:0:TGACCA Contig525108 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11568:15922_1:N:0:TGACCA Contig87681 4225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2044:17020_1:N:0:TGACCA Contig3986 20622 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5383:17974_1:N:0:TGACCA Contig339002 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15016:18128_1:N:0:TGACCA Contig87177 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20262:18315_1:N:0:TGACCA Contig612168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17498:18930_1:N:0:TGACCA Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11962:21307_1:Y:0:TGACCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6636:22075_1:N:0:TGACCA Contig523395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3555:22292_1:N:0:TGACCA Contig515784 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21216:22992_1:N:0:TGACCA Contig462402 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5821:23696_1:N:0:TGACCA Contig191543 1172 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7045:24178_1:N:0:TGACCA Contig2150 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7903:25624_1:N:0:TGACCA Contig88415 9722 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5167:27262_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13298:28708_1:N:0:TGACCA Contig551953 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15780:29221_1:N:0:TGACCA Contig530378 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8494:31002_1:N:0:TGACCA Contig530378 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18352:31749_1:N:0:TGACCA Contig625723 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6024:31979_1:N:0:TGACCA Contig105202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6760:31815_1:N:0:TGACCA Contig92392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12636:32112_1:Y:0:TGACCA Contig15216 335 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1649:33072_1:N:0:TGACCA Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13928:33523_1:N:0:TGACCA Contig553316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17963:33672_1:N:0:TGACCA Contig147483 845 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14762:35121_1:N:0:TGACCA Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11312:35362_1:N:0:TGACCA Contig79777 9850 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4010:36299_1:N:0:TGACCA Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4864:36945_1:N:0:TGATCA Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11280:37132_1:N:0:TGACCA Contig13974 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9135:39591_1:N:0:TGACCA Contig102854 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14619:40632_1:N:0:TGACCA Contig15911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19687:40514_1:N:0:TGACCA Contig74856 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11253:43553_1:N:0:TGACCA Contig54063 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4158:45243_1:Y:0:TGACCA Contig113136 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7611:47480_1:Y:0:TGACCA Contig128738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8900:48725_1:N:0:TGACCA Contig9424 2289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12238:49411_1:N:0:TGACCA Contig215534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6588:51984_1:N:0:TGACCA Contig535057 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2333:52288_1:Y:0:TGACCA Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6860:54245_1:N:0:TGACCA Contig136065 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18308:54184_1:N:0:TGACCA Contig25966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4363:56917_1:N:0:TGACCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20395:58269_1:N:0:TGACCA Contig266283 128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1240:59173_1:N:0:TGACCA Contig314259 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12917:60125_1:N:0:TGACCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14184:60252_1:N:0:TGACCA Contig164680 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12334:60567_1:N:0:TGACCA Contig510981 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1498:63171_1:N:0:TGACCA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8608:64228_1:N:0:TGACCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18149:64632_1:N:0:TGACCA Contig597405 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15151:69956_1:N:0:TGACCA Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17877:70746_1:N:0:TGACCA Contig184921 778 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4119:73171_1:N:0:TGACCA Contig382489 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9725:73217_1:N:0:TGACCA Contig531460 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12206:74846_1:N:0:TGACCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13648:75064_1:N:0:TGACCA Contig212108 1125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16214:75203_1:N:0:TGACCA Contig341814 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1201:76591_1:N:0:TGACCA Contig302024 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16901:79244_1:N:0:TGACCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16240:79298_1:N:0:TGACCA Contig515495 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14063:80669_1:N:0:TGATCA Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3633:81248_1:N:0:TGACCA Contig118608 11579 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9089:81480_1:N:0:TGACCA Contig113467 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15727:81710_1:N:0:TGACCA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15733:81734_1:N:0:TGACCA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7708:81910_1:N:0:TGACCA Contig379114 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15671:82617_1:N:0:TGACCA Contig348245 8366 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14575:83175_1:N:0:TGACCA Contig128774 1287 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14849:84817_1:N:0:TGACCA Contig162395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18749:85359_1:N:0:TGACCA Contig1060 13569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18600:87212_1:N:0:TGACCA Contig689054 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5887:88979_1:N:0:TGACCA Contig480629 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18445:88988_1:N:0:TGACCA Contig10775 577 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17438:89164_1:N:0:TGACCA Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1277:89743_1:N:0:TGACCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4416:89913_1:N:0:TGACCA Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15678:90363_1:N:0:TGACCA Contig568738 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11541:91169_1:N:0:TGACCA Contig516232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17126:91287_1:N:0:TGACCA Contig182413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12612:94213_1:N:0:TGACCA Contig158147 734 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4198:95096_1:N:0:TGACCA Contig495611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21077:95830_1:N:0:TGACCA Contig664305 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15368:98745_1:N:0:TGACCA Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17678:98558_1:N:0:TGACCA Contig12828 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15661:99474_1:N:0:TGACCA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6244:3150_1:N:0:TGACCA Contig197569 468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10855:3051_1:N:0:TGACCA Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19653:3925_1:N:0:TGACCC Contig162267 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16119:5476_1:Y:0:TGACCA Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16645:6122_1:N:0:TGACCA Contig240999 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18996:6037_1:N:0:TGACCA Contig280405 308 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20205:6793_1:N:0:TGACCA Contig135495 1650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9678:7636_1:N:0:TGACCA Contig347923 470 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11949:7715_1:N:0:TGACCA Contig50904 1347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12452:9201_1:N:0:TGACCA Contig111719 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9289:10553_1:N:0:TGACCA Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12196:12155_1:N:0:TGACCA Contig90154 3079 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3404:12465_1:N:0:TGACCA Contig295720 363 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13074:12354_1:N:0:TGACCA Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14116:12256_1:N:0:TGACCA Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4319:12627_1:N:0:TGACCA Contig86245 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13449:12739_1:N:0:TGACCA Contig674537 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20960:13591_1:N:0:TGACCA Contig678553 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9568:14467_1:N:0:TGACCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3565:15528_1:N:0:TGACCA Contig104284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19488:15943_1:N:0:TGACCA Contig98714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2452:17978_1:Y:0:TGACCA Contig21483 8466 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14019:18045_1:N:0:TGACCC Contig22246 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19204:18651_1:N:0:TGACCA Contig495117 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19600:19123_1:N:0:TGACCA Contig679127 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5040:20261_1:N:0:TGACCA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14923:22144_1:N:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5797:23298_1:Y:0:TGACCA Contig487566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5619:25701_1:N:0:TGACCA Contig650566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2903:26021_1:N:0:TGACCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20768:27617_1:Y:0:AGACCA Contig40714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19364:27953_1:Y:0:TGACCA Contig79441 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8855:28124_1:N:0:TGACCA Contig230532 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16174:28019_1:N:0:TGACCA Contig344803 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17056:29223_1:N:0:TGACCA Contig533460 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11858:29399_1:N:0:TGACCA Contig406432 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6068:30345_1:N:0:TGACCA Contig66955 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10963:30859_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2044:31118_1:Y:0:TGACCA Contig108161 5759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9699:31884_1:Y:0:TGACCA Contig366838 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18752:32299_1:N:0:TGACCA Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5391:34388_1:N:0:TGACCA Contig61033 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18259:36461_1:N:0:TGACCA Contig556647 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16878:37021_1:Y:0:TGACCA Contig505463 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16948:37169_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14765:37708_1:N:0:TGACCA Contig500772 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17038:37597_1:N:0:TGACCA Contig16579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3698:37895_1:N:0:TGACCA Contig207905 6377 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10021:40277_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13162:40330_1:N:0:TGACCA Contig229087 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4671:41101_1:Y:0:TGACCA Contig207398 511 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3620:41789_1:N:0:TGACCA Contig169791 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15148:43041_1:N:0:TGACCA Contig2150 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19945:43323_1:N:0:TGACCA Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18129:43616_1:N:0:TGACCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6516:44406_1:N:0:TGACCA Contig426362 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5787:44700_1:N:0:TGACCA Contig239919 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15576:45139_1:Y:0:TGACCA Contig376115 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1231:45951_1:N:0:TGACCA Contig550337 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14392:46112_1:N:0:TGACCA Contig159155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10810:46418_1:N:0:TGACCA Contig628263 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5223:46638_1:N:0:TGACCA Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4362:46885_1:N:0:TGACCA Contig172736 2130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10968:51872_1:N:0:TGACCA Contig187548 309 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12261:52717_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18871:52652_1:N:0:TAACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19376:53499_1:N:0:TGACCA Contig239863 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3787:54548_1:N:0:TGACCA Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13578:60539_1:N:0:TGACCA Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17588:60679_1:N:0:TGACCA Contig339372 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9798:63446_1:N:0:TGACCA Contig142592 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1411:64450_1:N:0:TGACCA Contig558857 198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9770:64464_1:N:0:TGACCA Contig66689 12385 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9978:65311_1:N:0:TGACCA Contig328221 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16986:67439_1:N:0:TGACCA Contig216978 969 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20494:67859_1:N:0:TTACCA Contig498964 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20590:68294_1:N:0:TGACCA Contig602782 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6093:69102_1:N:0:TGACCA Contig419140 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1412:70670_1:N:0:TGACCA Contig28088 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4927:70736_1:N:0:TGACCA Contig203603 894 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16001:71033_1:N:0:TGACCA Contig79441 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13074:73957_1:N:0:TGACCA Contig295920 200 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11774:76730_1:N:0:TGACCA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5063:77808_1:N:0:TGACCA Contig398379 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19260:78557_1:N:0:TGACCA Contig358108 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10255:78973_1:N:0:TGACCA Contig383229 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6792:79229_1:N:0:TAACCA Contig573636 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15814:80182_1:N:0:TGACCA Contig112102 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5952:82392_1:N:0:TGACCA Contig12288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1947:83587_1:N:0:TGACCA Contig290479 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11482:85072_1:N:0:TGACCA Contig368188 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8881:85512_1:N:0:TGACCA Contig110601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8514:87329_1:N:0:TGACCA Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18658:90107_1:Y:0:TGACCA Contig207680 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9993:90527_1:N:0:TGACCA Contig62815 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15630:91660_1:N:0:TGACCA Contig569739 414 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7440:92251_1:N:0:TGACCA Contig79131 4065 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9208:94815_1:N:0:TGACCA Contig20834 2172 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15033:95473_1:N:0:TGACCA Contig69001 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7606:95786_1:N:0:TGACCA Contig92392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3070:97574_1:N:0:TGACCA Contig374257 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13182:97840_1:N:0:TGACCA Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8583:98524_1:N:0:TGACCA Contig695027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17201:98644_1:N:0:TGACCA Contig397895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12554:100102_1:N:0:TGACCA Contig399390 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15875:4894_1:N:0:TGACCA Contig17794 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14840:7151_1:N:0:TGACCA Contig426735 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17322:9490_1:Y:0:TGACCA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12704:10270_1:N:0:TGACCA Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4160:12943_1:N:0:TGACCA Contig202374 725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2879:18011_1:N:0:TGACCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14984:19656_1:N:0:TGACCA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20626:19884_1:N:0:TGACCA Contig323142 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10160:20236_1:N:0:TGACCA Contig208161 1433 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11940:20035_1:N:0:TGACCA Contig424300 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18723:22012_1:Y:0:TGACCA Contig176316 6998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21038:22694_1:N:0:TGACCA Contig151085 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9740:22969_1:N:0:TGACCA Contig39396 12325 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3672:26732_1:N:0:TGACCA Contig188774 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12933:27472_1:N:0:TGACCA Contig78583 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16691:28942_1:N:0:TGACCA Contig632348 156 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5230:29859_1:N:0:TGACCA Contig112374 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18514:29869_1:N:0:TGACCA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4312:32145_1:N:0:TGACCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9920:35807_1:N:0:TGACCA Contig94222 1532 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7530:36018_1:N:0:TGACCA Contig481198 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7661:37461_1:N:0:TGACCA Contig463864 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16731:37390_1:N:0:TGACCA Contig590598 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7691:38949_1:N:0:TGACCA Contig334839 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18272:38893_1:N:0:TGACCA Contig248757 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17042:40166_1:N:0:TGACCA Contig661432 143 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19590:40207_1:N:0:TGACCA Contig35780 1814 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1312:41541_1:Y:0:TGACCA Contig111675 3356 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4742:41591_1:N:0:TGACCA Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17446:45292_1:N:0:TGACCA Contig145056 1110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5172:47869_1:N:0:TGACCA Contig637676 525 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2935:48228_1:N:0:TGACCA Contig473617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14341:48703_1:N:0:TGACCA Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6196:48775_1:N:0:TGACCA Contig522740 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6371:48842_1:N:0:TGACCA Contig433213 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7294:49111_1:N:0:TGACCA Contig695027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5237:50201_1:N:0:TGACCA Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5294:50366_1:N:0:TGACCA Contig159379 8238 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5957:50419_1:N:0:TGACCA Contig125513 1089 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19801:53700_1:N:0:TGACCA Contig123341 1384 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13542:54147_1:N:0:TGACCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19550:55786_1:N:0:TGACCA Contig230487 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10764:56779_1:N:0:TGACCA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20653:56755_1:N:0:TGACCA Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11010:57176_1:N:0:TAACCA Contig376095 535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15651:59219_1:N:0:TGACCA Contig167686 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2901:60215_1:N:0:TGACCA Contig578782 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14849:60670_1:N:0:TGACCA Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7726:61376_1:N:0:TGACCA Contig70795 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12001:61283_1:N:0:TGACCA Contig207905 6377 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18172:62940_1:N:0:TGACCA Contig591184 867 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18865:64759_1:N:0:TGACCA Contig505463 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19947:65105_1:N:0:TGACCA Contig58064 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12472:65638_1:N:0:TGACCA Contig352437 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13044:67151_1:N:0:TGACCA Contig455324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16201:67594_1:N:0:TGACCA Contig235004 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17689:68224_1:N:0:TGACCA Contig14135 668 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8581:68497_1:N:0:TGACCA Contig210335 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5861:68502_1:N:0:TGACCA Contig64591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19550:70729_1:N:0:TGACCA Contig108161 5762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21131:70798_1:N:0:TGACCA Contig55633 9951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3233:72372_1:N:0:TGACCA Contig378122 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15770:72418_1:N:0:TGACCA Contig35645 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2288:72774_1:N:0:TGACCA Contig246556 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7118:73383_1:N:0:TGACCA Contig87335 1721 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11046:73974_1:N:0:TGACCA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14274:75650_1:N:0:TGACCA Contig622127 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5948:77945_1:N:0:TGACCA Contig371160 5612 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13267:78567_1:N:0:TGACCA Contig589484 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15225:78687_1:N:0:TGACCA Contig497260 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3526:78794_1:N:0:TGACCA Contig64591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19753:81462_1:N:0:TGACCA Contig99235 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19128:81517_1:N:0:TGACCA Contig489701 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18118:82031_1:N:0:TGACCA Contig521762 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2503:82626_1:N:0:TGACCA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18711:82854_1:N:0:TGACCA Contig84439 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6377:83560_1:N:0:TGACCA Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2652:84479_1:Y:0:TGACCA Contig432793 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9060:85604_1:N:0:TGACCA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15489:86316_1:N:0:TGACCA Contig382647 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11842:86527_1:N:0:TGACCA Contig268594 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14753:87710_1:N:0:TGACCA Contig70195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2805:87905_1:N:0:TGACCA Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18163:87775_1:N:0:TGACCA Contig615795 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21007:90377_1:N:0:TGACCA Contig397146 363 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3060:92587_1:N:0:TGACCA Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14493:92998_1:N:0:TGACCA Contig289124 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12362:93589_1:N:0:TGACCA Contig503397 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20082:93514_1:N:0:TGACCA Contig59759 5466 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8906:94040_1:N:0:TGACCA Contig124150 265 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6057:94449_1:N:0:TGACCA Contig74641 4801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6166:95197_1:N:0:TGACCA Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13964:95093_1:N:0:TGACCA Contig455761 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2565:95494_1:N:0:TGACCA Contig112911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12930:95588_1:N:0:TGACCA Contig646636 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14753:95881_1:N:0:TGACCA Contig503172 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19003:96831_1:N:0:TGACCA Contig654584 824 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11035:97715_1:N:0:TGACCA Contig87822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13560:97575_1:N:0:TGACCA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7367:98300_1:N:0:TGACCA Contig322726 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19796:98475_1:N:0:TGACCA Contig246945 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12198:98558_1:Y:0:TGACCA Contig254739 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15640:4828_1:N:0:TGACCA Contig376095 535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:21053:4975_1:N:0:TGACCA Contig411469 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11495:6191_1:N:0:TGACCA Contig121490 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14512:7596_1:N:0:TGACCA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6995:7944_1:N:0:TGACCA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8949:7938_1:N:0:TGACCA Contig175398 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18667:8193_1:N:0:TGACCA Contig187757 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:13293:8369_1:N:0:TGACCA Contig394405 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11480:8969_1:N:0:TGACCA Contig550493 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19170:10377_1:N:0:TGACCA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16456:11481_1:N:0:TGACCA Contig53968 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18587:11377_1:N:0:TGACCA Contig297265 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14740:11882_1:N:0:TGACCA Contig355987 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9558:14260_1:N:0:TGACCA Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12125:14465_1:N:0:TGACCA Contig222380 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17417:14602_1:N:0:TGACCA Contig673557 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3502:15702_1:N:0:TGACCA Contig178534 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19484:15860_1:N:0:TGACCA Contig168200 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1671:16480_1:N:0:TGACCA Contig516912 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19411:17239_1:Y:0:TGACCA Contig392006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17518:17293_1:N:0:TGACCA Contig130274 1430 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6379:21102_1:N:0:TGACCA Contig527975 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11346:22309_1:N:0:TGACCA Contig89032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19654:23209_1:Y:0:TGACCA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:21197:23169_1:N:0:TGACCA Contig554027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15743:26218_1:N:0:TGACCA Contig77462 5498 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5107:26481_1:N:0:TGACCA Contig116 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2408:26767_1:N:0:TGACCA Contig195741 8133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10451:28273_1:N:0:TGACCA Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16957:29138_1:N:0:TGACCA Contig606973 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5922:30947_1:N:0:TGACCA Contig152795 600 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6598:31778_1:N:0:TGACCA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12213:32478_1:N:0:TGACCA Contig146906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11153:33100_1:N:0:TGACCA Contig667511 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9782:33336_1:N:0:TGACCA Contig131130 903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2334:34582_1:N:0:TGACCA Contig211872 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12658:34685_1:Y:0:TGACCA Contig29421 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17034:35841_1:N:0:TGACCA Contig84200 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15480:38892_1:N:0:TGACCA Contig233292 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20554:39462_1:N:0:TGACCA Contig412389 75 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 630560 (63.06%) aligned 0 times 132854 (13.29%) aligned exactly 1 time 236586 (23.66%) aligned >1 times 36.94% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 686748 (68.67%) aligned 0 times 122247 (12.22%) aligned exactly 1 time 191005 (19.10%) aligned >1 times 31.33% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 630782 (63.08%) aligned 0 times 133335 (13.33%) aligned exactly 1 time 235883 (23.59%) aligned >1 times 36.92% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 687980 (68.80%) aligned 0 times 121710 (12.17%) aligned exactly 1 time 190310 (19.03%) aligned >1 times 31.20% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_4_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_4_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 328404 Mapping efficiency: 32.8% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2003787 Total methylated C's in CpG context: 280951 Total methylated C's in CHG context: 8854 Total methylated C's in CHH context: 100565 Total methylated C's in Unknown context: 45 Total unmethylated C's in CpG context: 44679 Total unmethylated C's in CHG context: 404574 Total unmethylated C's in CHH context: 1164164 Total unmethylated C's in Unknown context: 347 C methylated in CpG context: 86.3% C methylated in CHG context: 2.1% C methylated in CHH context: 8.0% C methylated in Unknown context (CN or CHN): 11.5% Bismark completed in 0d 7h 3m 15s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_5_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_5_s456_trimmed.fq.gz to zr1394_5_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_5_s456_trimmed.fq.gz to zr1394_5_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_5_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_5_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_5_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_5_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1173:2158_1:N:0:ACAGTG 4 * 0 0 * * 0 0 ATATTAAATATTATAAATTTATTATATATT B/FF/FFFFFFFF>> Writing bisulfite mapping results to zr1394_5_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_5_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20071:2151_1:N:0:ACAGTG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13937:3493_1:N:0:ACAGTG Contig208095 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12839:5640_1:N:0:ACAGTG Contig31635 1023 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8306:7647_1:N:0:ACAGTG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19048:8604_1:N:0:ACAGTG Contig9393 3228 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19756:12054_1:N:0:ACAGTG Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18539:12981_1:N:0:ACAGTG Contig67295 6764 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13395:15877_1:N:0:ACAGTG Contig348752 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1377:16604_1:N:0:ACAGTG Contig159684 830 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3362:16784_1:N:0:ACAGTG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12873:18490_1:N:0:ACAGTG Contig164475 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14712:18960_1:N:0:ACAGTG Contig11980 1689 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10039:19123_1:N:0:ACAGTG Contig128149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17148:19850_1:N:0:ACAGTG Contig23064 7562 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1798:21861_1:N:0:ACAGTG Contig36551 3842 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12559:23177_1:N:0:ACAGTG Contig622364 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7210:24121_1:N:0:ACAGTG Contig422640 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7594:24510_1:N:0:ACAGTG Contig84608 5979 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13190:25605_1:N:0:ACAGTG Contig499830 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14927:25675_1:Y:0:ACAGTG Contig99411 7880 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10996:27095_1:N:0:ACAGTG Contig203603 894 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5266:27877_1:N:0:ACAGTG Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2747:28023_1:N:0:ACAGTG Contig282956 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6398:28086_1:Y:0:ACAGTG Contig19004 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17260:28187_1:Y:0:TCAGTG Contig183189 606 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7907:28472_1:N:0:ACAGTG Contig342941 9859 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13779:28395_1:N:0:ACAGTG Contig282820 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18903:28701_1:N:0:ACAGTG Contig638649 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6939:31029_1:N:0:ACAGTG Contig362504 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15596:31194_1:N:0:ACAGTG Contig619774 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16332:31976_1:N:0:ACAGTG Contig145646 2008 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9338:32027_1:N:0:ACAGTG Contig191793 687 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1657:33154_1:N:0:ACAGTG Contig10547 2398 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19072:35186_1:N:0:ACAGTG Contig302959 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7203:36381_1:N:0:ACAGTG Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11656:38342_1:N:0:ACAGTG Contig424312 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3258:38713_1:N:0:ACAGTG Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16370:39198_1:N:0:ACAGTG Contig110465 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1508:41789_1:N:0:ACAGTG Contig598386 596 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19008:43354_1:N:0:ACAGTG Contig39377 4444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19752:45552_1:N:0:ACAGTG Contig483830 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14705:46098_1:N:0:ACAGTG Contig144585 11940 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6255:46629_1:N:0:ACAGTG Contig28157 62347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20915:49041_1:N:0:ACAGTG Contig120547 11081 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17108:49345_1:N:0:ACAGTG Contig354517 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11071:49557_1:N:0:ACAGTG Contig537205 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2343:50436_1:N:0:ACAGTG Contig32976 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10043:50675_1:N:0:ACAGTG Contig452245 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20428:51416_1:N:0:ACAGTG Contig385274 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1838:52445_1:N:0:ACAGTG Contig165445 2931 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12308:53942_1:N:0:ACAGTG Contig103869 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7969:54074_1:N:0:ACAGTG Contig637170 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4578:58052_1:N:0:ACAGTG Contig51471 15981 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14545:58015_1:N:0:ACAGTG Contig672130 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9451:59053_1:N:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19841:59706_1:Y:0:ACAGTG Contig252646 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13044:61830_1:N:0:ACAGTG Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19893:61966_1:N:0:ACAGTG Contig58064 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9425:63433_1:N:0:ACAGTG Contig125269 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9263:65876_1:N:0:ACAGTG Contig139935 2173 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17337:66272_1:Y:0:ACAGTG Contig208864 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15581:66737_1:N:0:ACAGTG Contig125269 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20080:67084_1:N:0:ACAGTG Contig337758 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3727:67535_1:N:0:ACAGTG Contig353613 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17671:68221_1:N:0:ACAGTG Contig420088 358 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9994:70648_1:N:0:ACAGTG Contig34599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11929:71266_1:N:0:ACAGTG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15996:71545_1:N:0:ACAGTG Contig615611 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1842:72400_1:N:0:ACAGTG Contig474092 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17566:72408_1:N:0:ACAGTG Contig177538 802 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3054:73749_1:Y:0:ACAGTG Contig212116 3041 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8455:74847_1:N:0:ACAGTG Contig152369 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8331:75255_1:N:0:ACAGTG Contig368581 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9445:75945_1:N:0:ACAGTG Contig24176 345 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20641:76457_1:N:0:ACAGTG Contig232404 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12134:76995_1:N:0:ACAGTG Contig46469 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9593:77802_1:N:0:ACAGTG Contig112426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17601:78890_1:N:0:ACAGTG Contig395361 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9125:79570_1:Y:0:ACAGTG Contig365437 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11378:79761_1:Y:0:ACAGTG Contig348378 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14368:80446_1:N:0:ACAGTG Contig14477 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19476:80879_1:N:0:ACAGTG Contig401979 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11791:82730_1:N:0:ACAGTG Contig297555 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3558:82824_1:N:0:ACAGTG Contig359806 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6039:82817_1:N:0:ACAGAG Contig135070 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16121:82765_1:N:0:ATAGTG Contig66026 635 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8821:83147_1:N:0:ACAGTG Contig663944 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19396:83470_1:N:0:ACAGTG Contig664897 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7286:84885_1:N:0:ACAGTG Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18600:84895_1:N:0:ACAGTG Contig498060 2112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19306:85105_1:N:0:ACAGTG Contig301967 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3202:85868_1:N:0:ACAGTG Contig316987 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12671:86269_1:N:0:ACAGTG Contig389767 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13917:86585_1:N:0:ACAGTG Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12484:87481_1:N:0:ACAGTG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20426:87273_1:N:0:ACAGTG Contig114068 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20603:87517_1:Y:0:ACAGTG Contig448740 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13037:87807_1:N:0:ACAGTG Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21181:88137_1:Y:0:ACAGTG Contig192988 1666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6087:89911_1:Y:0:ACAGTG Contig572887 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6545:89857_1:N:0:ACAGTG Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16765:90478_1:N:0:ACAGTG Contig41004 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14409:92009_1:N:0:ACAGTG Contig683815 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19446:92303_1:N:0:ACAGTG Contig602687 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16150:93063_1:N:0:ACAGTG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15614:93650_1:N:0:ACAGTG Contig195688 1060 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16002:94596_1:N:0:ACAGTG Contig31360 38607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15935:95074_1:N:0:ACAGTG Contig212145 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11034:95589_1:Y:0:ACAGTG Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13350:96098_1:N:0:ACAGTG Contig61918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13396:96113_1:N:0:ACAGTG Contig369608 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7241:96963_1:N:0:ACAGTG Contig361235 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8226:97963_1:N:0:ACAGTG Contig83105 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10511:98489_1:N:0:ACAGTG Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2063:3217_1:Y:0:ACAGTT Contig248779 998 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8442:3347_1:N:0:ACAGTG Contig159556 630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11779:3472_1:N:0:ACAGTG Contig552244 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2821:5523_1:N:0:ACAGTG Contig353669 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18057:5733_1:N:0:ACAGTG Contig16055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18666:8784_1:N:0:ACAGTG Contig206165 836 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19290:9028_1:N:0:ACAGTG Contig35003 574 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16173:9960_1:N:0:ACAGTG Contig351483 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7097:10222_1:N:0:ACAGTG Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2600:10692_1:N:0:ACAGTG Contig208858 850 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4227:10667_1:N:0:ACAGTG Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14103:11581_1:N:0:ACAGTG Contig111552 1606 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3343:11947_1:N:0:ACAGTG Contig212308 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7330:12023_1:Y:0:ACTGTG Contig5480 5729 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4873:12448_1:N:0:ACAGTG Contig139558 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3635:13027_1:N:0:ACAGTG Contig504043 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10417:13254_1:N:0:ACAGTG Contig644336 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21032:13400_1:N:0:ACAGTG Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13681:13592_1:N:0:TCAGTG Contig51452 7798 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2013:15880_1:N:0:ACAGTG Contig44931 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14759:16135_1:N:0:ACAGTG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5735:16761_1:N:0:ACAGTG Contig183189 607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16824:17851_1:N:0:ACAGTG Contig46822 13089 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18099:17918_1:N:0:ACAGTG Contig672456 152 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10846:19363_1:N:0:ACAGTG Contig4739 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12534:20293_1:N:0:ACAGTG Contig22549 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2009:21979_1:N:0:ACAGTG Contig104439 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6648:22475_1:N:0:ACAGTG Contig115061 4198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5667:22501_1:N:0:GCAGTG Contig142624 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21288:23801_1:N:0:ACAGTG Contig312699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2197:24139_1:Y:0:ACAGTG Contig323147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2263:24166_1:N:0:ACAGTG Contig129827 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5040:28451_1:N:0:ACAGTG Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20863:28318_1:N:0:ACAGTG Contig28157 62349 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12416:28938_1:N:0:ACAGTG Contig677852 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12798:30351_1:N:0:ACAGTG Contig129326 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11517:33173_1:N:0:ACAGTG Contig179243 4096 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13282:33601_1:N:0:ACAGTG Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19228:34507_1:N:0:ACAGTG Contig9115 289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6053:35769_1:Y:0:ACAGTG Contig176713 540 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15384:36028_1:N:0:ACAGTG Contig396265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2063:37394_1:N:0:ACAGTG Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3560:39108_1:N:0:ACAGTG Contig323383 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19377:39259_1:N:0:ACAGTG Contig132055 1082 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16065:39660_1:N:0:ACAGTG Contig176890 3771 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19025:39719_1:N:0:ACAGTG Contig443317 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20538:39737_1:N:0:ACAGTG Contig628089 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12186:39909_1:N:0:ACAGTG Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9724:41511_1:N:0:ACAGTG Contig609847 1725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17533:41940_1:N:0:ACAGTG Contig604679 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19505:43850_1:N:0:ACAGTG Contig252813 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2378:46220_1:N:0:ACAGTG Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14988:47006_1:N:0:ACAGTG Contig489822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2267:47538_1:N:0:ACAGTG Contig570863 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14700:48614_1:N:0:ACAGTG Contig167634 6560 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4155:48796_1:Y:0:ACAATG Contig279822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11774:50829_1:N:0:ACAGTG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12061:52153_1:N:0:ACAGTG Contig153593 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11351:52386_1:N:0:ACAGTG Contig96916 2518 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1845:52584_1:N:0:ACAGTG Contig235030 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7043:52529_1:N:0:ACAGTG Contig326224 209 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11136:54597_1:N:0:ACAGTG Contig295667 248 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20571:55919_1:N:0:ACAGTG Contig542321 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10971:56967_1:N:0:ACAGTG Contig610650 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1960:63584_1:N:0:ACAGTG Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14321:64429_1:N:0:ACAGTG Contig323147 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7039:65623_1:Y:0:ACTGTG Contig64876 9935 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6287:67016_1:N:0:ACAGTG Contig191809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2736:68202_1:N:0:ACAGTG Contig116082 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4425:68160_1:N:0:ACAGTG Contig207275 2308 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4401:68590_1:N:0:ACAGTG Contig275995 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13562:68774_1:N:0:ACAGTG Contig552723 2759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9200:71749_1:N:0:ACAGTG Contig175974 771 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18029:71929_1:N:0:ACAGTG Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3553:72307_1:N:0:ACAGTG Contig41253 8803 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6722:72517_1:N:0:ACAGTG Contig645706 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3784:73623_1:N:0:ACAGTG Contig530378 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18294:73513_1:N:0:ACAGTG Contig518925 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16699:75281_1:N:0:ACAGTG Contig560867 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2884:76123_1:Y:0:ACAGTG Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10137:77537_1:N:0:ACAGTG Contig145976 724 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14595:79598_1:N:0:ACAGTG Contig541634 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3973:80222_1:N:0:ACAGTG Contig70725 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4554:83724_1:N:0:ACAGTG Contig405007 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10866:83597_1:N:0:ACAGTG Contig498442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11405:85098_1:N:0:ACAGTG Contig554323 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8539:86126_1:N:0:ACAGTG Contig551582 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19025:86338_1:N:0:ACAGTG Contig285220 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19073:86702_1:N:0:ACAGTG Contig115061 4198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2400:87539_1:N:0:ACAGTG Contig645560 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19594:87807_1:Y:0:ACAGTG Contig548357 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2884:92277_1:N:0:ACAGTG Contig42122 5261 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7622:94422_1:N:0:ACAGTG Contig19933 4365 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7369:96359_1:N:0:ACAGTG Contig551582 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10900:97153_1:N:0:ACAGTG Contig54452 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4739:97466_1:N:0:ACAGTG Contig335792 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1133:97684_1:N:0:ACAGTG Contig440861 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10543:97723_1:N:0:ACAGTG Contig2222 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8271:98702_1:N:0:ACAGTG Contig71249 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3748:99593_1:N:0:ACAGTG Contig348136 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21274:2745_1:N:0:ACAGTG Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3310:3548_1:N:0:ACAGTG Contig674052 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2583:3921_1:N:0:ACAGTG Contig168105 1898 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19716:6506_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3391:9618_1:N:0:ACAGTG Contig152089 677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6017:11135_1:N:0:ACAGTG Contig10599 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4934:11678_1:N:0:ACAGTG Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8578:11631_1:N:0:ACAGTG Contig419337 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13088:13296_1:N:0:ACAGTG Contig50833 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5277:14959_1:N:0:ACAGTG Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21246:14809_1:N:0:ATAGTG Contig587005 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9619:15468_1:N:0:ACAGTG Contig560077 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13328:17019_1:N:0:ACAGTG Contig11605 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11040:18199_1:N:0:ACAGTG Contig65875 9576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16557:19389_1:N:0:ACAGTG Contig134745 978 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18728:19681_1:N:0:ACAGTG Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20972:20897_1:N:0:ACAGTG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7331:21393_1:N:0:ACAGTG Contig503955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13647:21264_1:N:0:ACAGTG Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17866:21319_1:N:0:ACAGTG Contig74421 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6207:22101_1:N:0:ACAGTG Contig88381 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3175:22528_1:N:0:ACAGTG Contig300694 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20445:23934_1:N:0:ACAGTG Contig177113 961 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8612:24349_1:N:0:ACAGTG Contig155000 501 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6623:24721_1:N:0:ACAGTG Contig48907 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17583:26977_1:N:0:ACAGTG Contig134697 15328 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9106:27791_1:N:0:ACAGTG Contig105202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16475:29356_1:N:0:ACAGTG Contig14880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12274:29797_1:N:0:ACAGTG Contig100134 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2124:30041_1:N:0:ACAGTG Contig192377 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1878:30856_1:N:0:ACAGTG Contig499348 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4432:32232_1:N:0:ACAGTG Contig88838 19542 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18705:32175_1:N:0:ACAGTG Contig3623 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11972:32990_1:N:0:ACAGTG Contig639826 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2205:33093_1:N:0:ACAGTG Contig183189 607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13146:33968_1:N:0:ACAGTG Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21167:33849_1:N:0:ACAGTG Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6625:34371_1:Y:0:ACAGTG Contig159820 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1733:34842_1:N:0:ACAGTG Contig350086 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10688:35339_1:N:0:ACAGTG Contig239075 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13293:35478_1:N:0:ACAGTG Contig500077 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21223:37166_1:N:0:ACAGTG Contig28864 27254 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18958:37709_1:N:0:ACAGTG Contig488699 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18447:37904_1:N:0:ACAGTG Contig376296 327 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8041:38306_1:Y:0:ACAGTG Contig217546 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16593:39329_1:N:0:ACAGTG Contig549943 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8707:40632_1:N:0:ACAGTG Contig69591 6010 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14021:41500_1:N:0:ACAGTG Contig269096 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1677:42115_1:N:0:ACAGTG Contig5906 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17501:44261_1:N:0:ACAGTG Contig461687 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15375:44787_1:N:0:ACAGTG Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18957:47411_1:N:0:ACAGTG Contig375755 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5647:53332_1:N:0:ACAGTG Contig414220 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16766:53401_1:N:0:ACAGTG Contig245735 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8765:54190_1:N:0:ACAGTG Contig105883 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5131:55318_1:N:0:ACAGTG Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13206:55409_1:N:0:ACAGTG Contig473617 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18171:55353_1:N:0:ACAGTG Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13254:55647_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6796:56015_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16023:56207_1:N:0:ACAGTG Contig80710 10885 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18563:58317_1:N:0:ACAGTG Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14518:59774_1:N:0:ACAGTG Contig680847 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15433:61787_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20353:62796_1:N:0:ACAGTG Contig481509 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11363:64249_1:N:0:ACAGTG Contig115310 1294 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13750:65486_1:N:0:ACAGTG Contig87567 32746 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14966:66454_1:N:0:ACAGTG Contig172773 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9662:66562_1:N:0:ACAGTG Contig106883 2345 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6159:68860_1:N:0:ACAGTG Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14822:68812_1:N:0:ACAGTG Contig560077 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1119:69253_1:N:0:ACAGTG Contig626490 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10132:70176_1:N:0:ACAGTG Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19148:73467_1:N:0:ACAGTG Contig109369 8544 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16975:73702_1:N:0:ACAGTG Contig69363 2723 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21074:76587_1:N:0:ACAGTG Contig368699 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1538:76799_1:N:0:ACAGTG Contig53737 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6761:77565_1:N:0:ACAGTG Contig522607 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9631:77642_1:N:0:ACAGTG Contig39571 8575 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6109:77846_1:N:0:ACAGTG Contig110347 1552 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15428:78147_1:N:0:ACAGTG Contig72700 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9090:79201_1:N:0:ACAGTG Contig73884 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12433:79717_1:N:0:ACAGTG Contig286842 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15160:82056_1:N:0:ACAGTG Contig9711 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12650:82607_1:N:0:ACAGTG Contig405891 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20098:82678_1:N:0:ACAGTG Contig560547 929 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1216:83157_1:N:0:ACAGTG Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13014:83909_1:N:0:ACAGTG Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2776:84182_1:N:0:ACAGTG Contig635903 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14155:84848_1:N:0:ACAGTG Contig492282 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14030:85559_1:N:0:ACAGTG Contig435376 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11768:86554_1:N:0:ACAGTG Contig21801 33175 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8839:87081_1:N:0:ACAGTG Contig216334 916 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5944:88168_1:N:0:ACAGTG Contig46139 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3976:90183_1:N:0:ACAGTG Contig148650 10856 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3991:91537_1:N:0:ACAGTG Contig224935 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5544:92321_1:N:0:ACAGTG Contig376373 220 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8025:93338_1:N:0:ACAGTG Contig177944 791 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11424:94052_1:N:0:ACAGTG Contig179593 428 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2224:94493_1:N:0:ACAGTG Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9457:95038_1:Y:0:ACAGTG Contig670368 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17897:96396_1:N:0:ACAGTG Contig52901 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16110:98563_1:N:0:ACAGTG Contig282228 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16716:99013_1:N:0:ACAGTG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19095:99466_1:N:0:ACAGTG Contig428474 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18753:100006_1:Y:0:ACAGTG Contig21737 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14389:2484_1:N:0:ACAGTG Contig247746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10691:3326_1:N:0:ACAGTG Contig366381 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16737:3326_1:N:0:ACAGTG Contig565540 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11172:4997_1:N:0:ACAGTG Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12097:5620_1:N:0:ACAGTG Contig244947 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14348:5870_1:N:0:ACAGTG Contig222771 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16131:6422_1:N:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16892:7499_1:N:0:ACAGTG Contig311649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19326:8128_1:N:0:ACAGTG Contig10438 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19397:8241_1:N:0:ACAGTG Contig146488 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14979:8887_1:N:0:ACAGTG Contig110988 11683 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19020:9461_1:N:0:ACAGTG Contig230408 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20515:9442_1:N:0:ACAGTG Contig445420 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5400:9866_1:N:0:ACAGTG Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6923:9825_1:N:0:ACAGTG Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10047:10599_1:N:0:ACAGTG Contig540282 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18043:10952_1:N:0:ACAGTG Contig520323 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2786:11161_1:N:0:ACAGTG Contig286107 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13740:12034_1:Y:0:ACAGTG Contig206982 1090 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19644:12489_1:N:0:ACAGTG Contig554278 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1180:12531_1:N:0:ACAGTG Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3225:14582_1:N:0:ACAGTG Contig22705 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2490:15194_1:N:0:ACAGTG Contig118490 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4166:15199_1:N:0:ACAGTG Contig126430 711 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1799:16280_1:N:0:ACAGTG Contig565315 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18732:17785_1:N:0:ACAGTG Contig615096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18096:19694_1:N:0:ACAGTG Contig686180 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18121:20006_1:N:0:ACAGTG Contig638200 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10480:20261_1:Y:0:ACAGTG Contig119413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20005:20798_1:N:0:ACAGTG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14974:21199_1:N:0:ACAGTG Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13205:21741_1:N:0:ACAGTG Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18553:22808_1:N:0:ACAGTG Contig71871 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14496:23969_1:N:0:ACAGTG Contig545473 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12456:24952_1:N:0:ACAGTG Contig246558 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13521:24895_1:N:0:ACAGTG Contig99058 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15092:25544_1:N:0:ACAGTG Contig647292 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4255:26664_1:N:0:ACAGTG Contig195027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7806:28457_1:Y:0:ACAGTG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7416:31184_1:N:0:ACAGTG Contig78354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4953:33059_1:N:0:ACAGTG Contig109483 3418 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13948:33500_1:N:0:ACAGTG Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10760:33536_1:N:0:ACAGTG Contig594461 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17082:33662_1:N:0:ACAGTG Contig127008 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16718:37306_1:N:0:GCAGTG Contig2496 16444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4916:37998_1:N:0:ACAGTG Contig560447 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19686:39790_1:N:0:ACAGTG Contig405102 187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12379:41929_1:N:0:ACAGTG Contig233955 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14820:41992_1:N:0:ACAGTG Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20801:42715_1:N:0:ACAGTG Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12250:43035_1:N:0:ACAGTG Contig598681 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11735:43572_1:N:0:ACAGTG Contig197793 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13269:44171_1:N:0:ACAGTG Contig213798 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5112:44421_1:N:0:ACAGTG Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3562:45128_1:N:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4547:45915_1:Y:0:TCAGTG Contig613982 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5840:45877_1:N:0:ACAGTG Contig622024 126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19138:46705_1:Y:0:ACAGTG Contig564156 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10959:48408_1:N:0:ACAGTG Contig230580 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9072:49148_1:N:0:ACAGTG Contig197065 675 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3863:50532_1:N:0:ACAGTG Contig192458 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5687:52631_1:N:0:ACAGTG Contig212938 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15632:53117_1:N:0:ACAGTG Contig174713 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15815:53882_1:N:0:ACAGTG Contig480665 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7049:54749_1:N:0:ACAGTG Contig499895 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6463:54910_1:N:0:ACAGTG Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17831:55213_1:Y:0:ACAGTG Contig275322 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3558:56053_1:N:0:ACAGTG Contig597754 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10356:56427_1:N:0:ACAGTG Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8194:57020_1:N:0:ACAGTG Contig648656 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12680:57194_1:N:0:ACAGTG Contig157341 947 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6442:57524_1:Y:0:ACAGTG Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11005:60074_1:N:0:ACAGTG Contig160479 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7412:60367_1:N:0:ACAGTG Contig561977 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13498:60327_1:N:0:ACAGTG Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16914:60354_1:Y:0:ACAGTG Contig318873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5246:62105_1:N:0:ACAGTG Contig53860 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13261:62052_1:N:0:ACAGTG Contig53323 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21050:62429_1:N:0:ACAGTG Contig620885 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14622:63272_1:N:0:ACAGTG Contig15850 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19235:65607_1:N:0:ACGGTG Contig512524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2347:66262_1:N:0:ACAGTG Contig130735 14292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5049:66510_1:N:0:ATAGTG Contig525538 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6100:66539_1:N:0:ACAGTG Contig17052 14114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10644:66703_1:N:0:ACAGTG Contig650506 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21329:67227_1:Y:0:ACAGTG Contig181380 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17461:67839_1:N:0:ACAGTG Contig67161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4100:68178_1:N:0:ACAGTG Contig489528 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14967:68919_1:N:0:ACAGTG Contig426325 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6274:69883_1:N:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3424:71168_1:N:0:ACAGTG Contig216582 933 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7368:71879_1:N:0:ACAGTG Contig162988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1972:74599_1:N:0:ACAGTG Contig78583 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21127:74682_1:N:0:ACAGTG Contig251565 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2908:74941_1:N:0:ACAGTG Contig338378 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13098:75890_1:N:0:ACAGTG Contig127500 5599 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3415:76814_1:N:0:ACAGTG Contig359038 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15112:77720_1:N:0:ACAGTG Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7826:79650_1:N:0:ACAGTG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10133:79984_1:N:0:ACAGTG Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6723:81021_1:N:0:ACAGTG Contig101130 1735 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1232:81636_1:N:0:ACAGTG Contig332714 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13380:82272_1:N:0:ACAGTG Contig145036 727 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9391:82734_1:N:0:ACAGTG Contig51083 51428 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17404:83426_1:N:0:ACAGTG Contig118069 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14283:83616_1:N:0:AAAGTG Contig301735 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1652:83959_1:N:0:ACAGTG Contig69274 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16190:84510_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9650:87269_1:Y:0:ACAGTG Contig608153 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12534:87529_1:N:0:ACAGTG Contig20845 3135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17717:87834_1:N:0:ACAGTG Contig71518 15906 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15708:88210_1:N:0:ACAGTG Contig331699 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14893:88426_1:N:0:ACAGTA Contig442128 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14911:88427_1:N:0:ACAGTG Contig442128 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6335:90807_1:N:0:ACAGTG Contig278088 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2950:91578_1:N:0:ACAGTG Contig299561 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12003:92843_1:N:0:ACAGTG Contig515077 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19959:93327_1:Y:0:ACAGTG Contig257588 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6712:93583_1:N:0:ACAGTG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14665:96231_1:N:0:ACAGTG Contig212339 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7519:97898_1:Y:0:ACAGTG Contig9393 3228 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2405:98138_1:N:0:ACAGTG Contig8196 2207 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6233:99789_1:N:0:ACAGTG Contig302951 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20474:2736_1:N:0:ACAGTG Contig261639 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10455:4008_1:N:0:ACAGTG Contig643764 1549 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2893:4788_1:N:0:ACAGTG Contig17361 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12095:4759_1:N:0:ACAGTG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10316:5380_1:N:0:ACAGTG Contig285931 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14306:5355_1:N:0:ACAGTG Contig129663 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1130:8279_1:N:0:ACAGTG Contig494068 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13695:8620_1:N:0:ACAGTG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2701:9260_1:N:0:ACAGTG Contig184675 419 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14213:11783_1:N:0:ACAGTG Contig39308 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9143:12311_1:N:0:ACAGTG Contig255507 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6758:12931_1:N:0:ACAGTG Contig28157 62349 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12163:13259_1:N:0:ACAGTG Contig428117 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13785:14401_1:N:0:ACAGTG Contig556850 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10970:16268_1:N:0:ACAGTG Contig53737 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15306:16815_1:N:0:ACAGTG Contig332099 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2940:19049_1:N:0:ACAGTG Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4423:19326_1:N:0:ACAGTG Contig131344 1267 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10457:19549_1:N:0:ACAGTG Contig224935 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2693:21011_1:N:0:ACAGTG Contig197569 468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7104:21391_1:N:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1886:23263_1:N:0:ACAGTG Contig10508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20799:23479_1:N:0:ACAGTG Contig162477 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3147:23666_1:N:0:ACAGTG Contig567102 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10195:23621_1:N:0:ACAGTG Contig556715 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1420:24013_1:N:0:ACAGTG Contig393636 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16972:24278_1:N:0:ACAGTG Contig136859 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19404:24811_1:N:0:ACAGTG Contig180128 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5546:25440_1:N:0:ACAGTG Contig187124 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5088:25627_1:N:0:ACAGTG Contig474502 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13628:26044_1:N:0:ACAGTG Contig187218 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6701:28200_1:N:0:ACAGTG Contig120335 2087 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13997:28384_1:N:0:ACAGTG Contig228280 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4516:28744_1:N:0:ACAGTG Contig72295 29928 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20572:29331_1:N:0:ACAGTG Contig426266 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12246:29534_1:N:0:ACAGTG Contig17899 34297 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13239:30047_1:N:0:ACAGTG Contig15846 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16616:30288_1:N:0:ACAGTG Contig485540 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5940:30538_1:N:0:ACAGTG Contig16826 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4270:31038_1:N:0:ACAGTG Contig499450 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16749:31131_1:N:0:ACAGTG Contig25964 8821 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14528:33324_1:N:0:ACAGTG Contig127350 1617 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11512:34238_1:N:0:ACAGTG Contig443256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16459:34397_1:Y:0:ACAGTG Contig526385 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9099:35727_1:Y:0:ACAGTG Contig547495 176 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1509:36075_1:Y:0:ACAGTG Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2419:37177_1:N:0:ACAGTG Contig587005 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7625:38173_1:N:0:ACAGTG Contig171786 663 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15589:38054_1:N:0:ACAGTG Contig81493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5938:39365_1:N:0:ACAGTG Contig585966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9831:39682_1:N:0:ACAGTG Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13653:40453_1:N:0:ACAGTG Contig598804 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20162:40455_1:N:0:ACAGTG Contig18393 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8573:41798_1:N:0:ACAGTG Contig56598 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8775:42967_1:N:0:ACAGTG Contig160562 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12975:43920_1:N:0:ACAGTG Contig188774 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1344:44633_1:N:0:ACAGTG Contig296176 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17005:45524_1:N:0:ACAGTG Contig638716 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17378:45626_1:N:0:ACAGTG Contig461699 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8818:46163_1:N:0:ACAGTG Contig422009 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2272:46554_1:N:0:ACAGTG Contig305610 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9059:48320_1:Y:0:ACAGTT Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20353:48341_1:N:0:ACAGTG Contig31142 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7643:49159_1:N:0:ACAGTG Contig522239 569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2390:51457_1:N:0:ACAGTG Contig626687 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12024:53535_1:N:0:ACAGTG Contig140307 753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20636:53590_1:N:0:ACAGTG Contig257286 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6030:54683_1:N:0:ACAGTG Contig285331 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18644:54558_1:N:0:ACAGTG Contig540133 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7293:56958_1:N:0:ACAGTG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5721:57374_1:N:0:ACAGTG Contig32976 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6869:57339_1:N:0:ACAGTG Contig395338 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2880:58428_1:N:0:ACAGTG Contig570052 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7519:61237_1:N:0:TCAGTG Contig8613 4640 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20516:63279_1:N:0:ACAGTG Contig354392 731 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14474:63715_1:N:0:ACAGTG Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14881:63546_1:N:0:ACAGTG Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19358:64071_1:N:0:ACAGTG Contig514507 8040 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20047:65151_1:N:0:ACAGTG Contig465244 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5790:68363_1:N:0:ACAGTG Contig461739 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20791:70795_1:N:0:ACAGTG Contig116318 1707 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3529:71574_1:N:0:ACAGTG Contig324134 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19341:72327_1:N:0:ACAGTG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6171:72957_1:Y:0:ACAGTG Contig134308 3965 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15609:73275_1:N:0:ACAGTG Contig406432 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15190:73922_1:N:0:ACAGTG Contig83727 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19216:74072_1:N:0:ACAGTG Contig182551 1748 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11740:77148_1:N:0:ACAGTG Contig284658 145 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17406:78310_1:N:0:ACAGTG Contig584567 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20084:79744_1:N:0:ACAGTG Contig67161 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5574:81139_1:N:0:ACAGTG Contig450316 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11180:81881_1:N:0:ACAGTG Contig619806 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7477:83695_1:N:0:ACAGTG Contig64481 11056 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4858:84228_1:N:0:ACAGTG Contig396271 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1264:86219_1:N:0:ACAGTG Contig71871 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13926:86665_1:N:0:ACAGTG Contig106215 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9400:87208_1:N:0:ACAGTG Contig277147 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19308:87270_1:N:0:ACACTG Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16323:88538_1:N:0:ACAGTG Contig428746 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20397:88574_1:N:0:ACAGTG Contig245735 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5767:90541_1:N:0:ACAGTG Contig22197 6040 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21011:91747_1:N:0:ACAGTG Contig286842 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12257:92329_1:N:0:ACAGTG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8229:94512_1:N:0:ACAGTG Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1847:95339_1:N:0:ACAGTG Contig413 31659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6599:96409_1:Y:0:ACAGTG Contig114068 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8837:99128_1:N:0:ACAGTG Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18302:99938_1:N:0:ACAGTG Contig178294 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16614:100214_1:N:0:ACAGTG Contig161949 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1813:3151_1:N:0:ACAGTG Contig403158 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16423:3996_1:N:0:ACAGTG Contig60361 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2051:4556_1:N:0:ACAGTG Contig202307 669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2191:7471_1:N:0:ACAGTG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19250:8646_1:N:0:ACAGTG Contig234491 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4281:9422_1:N:0:ACAGTG Contig64160 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13369:9278_1:N:0:ACAGTG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5717:10458_1:N:0:ACAGTG Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8356:10657_1:N:0:ACAGTG Contig287979 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14353:11353_1:N:0:ACAGTG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7276:12242_1:N:0:ACAGTG Contig569340 153 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19033:12420_1:N:0:ACAGTG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2821:12750_1:N:0:ACAGTG Contig406932 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20433:15020_1:N:0:ACAGTG Contig302944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10755:15441_1:N:0:ACAGTG Contig524320 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2028:15567_1:N:0:ACAGTG Contig418798 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19328:15702_1:N:0:ACAGTG Contig533793 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4534:15984_1:N:0:ACAGTG Contig96916 2518 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14486:15776_1:N:0:ACAGTG Contig370856 205 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5901:16395_1:N:0:ACAGTG Contig29129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16166:17325_1:N:0:ACAGTG Contig578538 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15121:18732_1:N:0:ACAGTG Contig111311 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18035:18563_1:N:0:ACAGTG Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13491:20218_1:N:0:ACAGTG Contig194849 1140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13865:20117_1:N:0:ACAGTG Contig34454 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7116:20323_1:N:0:ACAGTG Contig378994 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17571:20476_1:N:0:ACAGTG Contig181140 1032 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14053:22100_1:N:0:ACAGTG Contig601866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18720:22290_1:N:0:ACAGTG Contig299852 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17938:23117_1:N:0:ACAGTG Contig274314 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16165:25228_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4197:25905_1:N:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16053:26120_1:N:0:ACAGTG Contig559751 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19158:26678_1:N:0:ACAGTG Contig249884 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2534:27612_1:N:0:ACAGTG Contig643484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13561:27687_1:Y:0:ACAGTG Contig26323 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14555:27527_1:N:0:ACAGTG Contig46469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5912:27932_1:N:0:ACAGTG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14804:27854_1:N:0:ACAGTG Contig376095 535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16890:28614_1:N:0:ACAGTG Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18363:29944_1:N:0:ACAGTG Contig657266 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14931:31806_1:Y:0:ACAGTG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17541:32145_1:N:0:ACAGTG Contig17996 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4562:34251_1:N:0:ACAGTG Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4975:35517_1:N:0:ACAGTG Contig551582 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15190:37556_1:N:0:ACAGTG Contig55081 164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6717:38239_1:Y:0:ACAGTG Contig42778 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6878:40085_1:N:0:ACAGTG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11672:40266_1:N:0:ACAGTG Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20516:42650_1:Y:0:ACAGTG Contig234341 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9904:45368_1:N:0:ACAGTG Contig112165 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17952:45881_1:N:0:ACAGTG Contig193174 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9717:46867_1:N:0:ACAGTG Contig431005 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4036:47478_1:N:0:ACAGTG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14586:47599_1:N:0:ACAGTG Contig586278 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9071:47871_1:N:0:ACAGTG Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12027:48988_1:Y:0:ACAGTG Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7666:49713_1:N:0:ACAGTG Contig218921 674 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13144:49773_1:N:0:ACAGTG Contig453694 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10356:50652_1:Y:0:ACAGTG Contig193909 280 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7674:51119_1:N:0:ACAGTG Contig122139 1428 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1374:51745_1:N:0:ACAGTG Contig393611 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4553:52407_1:N:0:ACAGTG Contig545357 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5327:53182_1:Y:0:ACAGTG Contig348762 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12116:54896_1:N:0:ACAGTG Contig600455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4507:55716_1:N:0:ACAGTG Contig642394 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17482:56915_1:N:0:ACAGTG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11477:57165_1:N:0:ACAGTG Contig103765 4387 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13833:57375_1:N:0:ACAGTG Contig402675 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11293:57966_1:N:0:ACAGTG Contig390804 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3761:61368_1:N:0:ACAGTG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20584:61346_1:N:0:ACAGTG Contig429218 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6041:62276_1:N:0:ACAGTG Contig644551 116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19199:62402_1:N:0:ACAGTG Contig259732 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7255:62701_1:Y:0:ACAGTG Contig171298 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10597:63558_1:N:0:ACAGTG Contig57606 11521 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20343:63577_1:N:0:ACAGTG Contig672538 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7681:64729_1:N:0:ACAGTG Contig163392 437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21262:64962_1:N:0:ACAGTG Contig675500 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21134:66821_1:N:0:ACAGTG Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7338:67015_1:Y:0:ACAGTG Contig463613 155 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12959:67737_1:N:0:ACAGTG Contig634182 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5130:68598_1:N:0:ACAGTG Contig537709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21080:69350_1:Y:0:ACAGTG Contig665817 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11203:70128_1:N:0:ACAGTG Contig618754 171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14573:71771_1:N:0:ACAGTG Contig52426 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10987:72918_1:N:0:ACAGTG Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4951:73902_1:N:0:ACAGTG Contig554719 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20480:75994_1:N:0:ACAGTG Contig95402 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1193:76568_1:N:0:ACAGTG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13979:76976_1:Y:0:ACAGTG Contig20202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2254:78093_1:N:0:ACAGTG Contig145269 1681 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1852:78444_1:N:0:ACAGTG Contig208095 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13836:79365_1:N:0:ACAGTG Contig502436 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14101:80225_1:N:0:ACAGTG Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7206:80512_1:N:0:ACAGTG Contig380693 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9420:80871_1:N:0:ACAGTG Contig105354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16671:81011_1:N:0:ACAGTG Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3761:81394_1:N:0:ACAGTG Contig41295 7607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16131:81396_1:Y:0:ACAGTG Contig358108 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7794:81784_1:N:0:ACAGTG Contig323383 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12424:81877_1:N:0:ACAGTG Contig285268 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7485:82207_1:N:0:ACAGGG Contig260673 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3917:82521_1:N:0:ACAGTG Contig422372 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13519:83777_1:N:0:ACAGTG Contig35788 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3285:84947_1:N:0:ACAGTG Contig201331 438 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14850:85759_1:Y:0:ACAGTG Contig622666 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15650:86640_1:N:0:ACAGTG Contig61092 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4689:87479_1:N:0:ACAGTG Contig9576 780 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21144:87505_1:Y:0:ACAGTG Contig526285 440 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4790:91206_1:N:0:ACAGTG Contig112911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5976:91712_1:N:0:ACAGTG Contig499830 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20587:91790_1:N:0:ACAGTG Contig9365 359 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1350:92360_1:N:0:ACAGTG Contig16057 276 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4307:92476_1:N:0:ACAGTG Contig73089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8297:93634_1:N:0:ACAGTG Contig388255 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4711:94053_1:N:0:ACAGTG Contig455284 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6610:94838_1:N:0:ACAGTG Contig645141 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3580:96179_1:N:0:ACAGTG Contig4083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6564:96181_1:N:0:ACAGTG Contig90430 2981 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7663:96016_1:N:0:ACAGTG Contig18935 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16675:96120_1:N:0:ACAGTG Contig29746 1182 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4267:98070_1:N:0:AGAGTG Contig212116 3039 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19916:98430_1:N:0:ACAGTG Contig252813 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18252:98986_1:N:0:ACAGTG Contig531618 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17478:99386_1:N:0:ACAGTG Contig148030 679 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12055:99581_1:Y:0:ACAGTG Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18124:99503_1:N:0:ACAGTG Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6072:2848_1:N:0:ACAGTG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17395:2943_1:N:0:ACAGTG Contig18718 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8709:3236_1:N:0:ACAGTG Contig221503 488 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14808:4407_1:N:0:ACAGTG Contig131945 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8615:4685_1:N:0:ACAGTG Contig311693 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1282:5279_1:N:0:ACAGTG Contig172362 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9005:6516_1:N:0:ACAGTG Contig411000 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3097:7400_1:N:0:ACAGTG Contig525081 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11697:7497_1:Y:0:ACAGTG Contig570934 288 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17531:7510_1:N:0:ACAGTG Contig125269 1 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 680901 (68.09%) aligned 0 times 134002 (13.40%) aligned exactly 1 time 185097 (18.51%) aligned >1 times 31.91% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 681844 (68.18%) aligned 0 times 133329 (13.33%) aligned exactly 1 time 184827 (18.48%) aligned >1 times 31.82% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 631939 (63.19%) aligned 0 times 142584 (14.26%) aligned exactly 1 time 225477 (22.55%) aligned >1 times 36.81% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 633420 (63.34%) aligned 0 times 141706 (14.17%) aligned exactly 1 time 224874 (22.49%) aligned >1 times 36.66% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_5_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_5_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 351878 Mapping efficiency: 35.2% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2070749 Total methylated C's in CpG context: 225228 Total methylated C's in CHG context: 8667 Total methylated C's in CHH context: 111730 Total methylated C's in Unknown context: 51 Total unmethylated C's in CpG context: 68155 Total unmethylated C's in CHG context: 419320 Total unmethylated C's in CHH context: 1237649 Total unmethylated C's in Unknown context: 372 C methylated in CpG context: 76.8% C methylated in CHG context: 2.0% C methylated in CHH context: 8.3% C methylated in Unknown context (CN or CHN): 12.1% Bismark completed in 0d 7h 22m 40s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_6_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_6_s456_trimmed.fq.gz to zr1394_6_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_6_s456_trimmed.fq.gz to zr1394_6_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_6_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_6_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_6_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_6_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1223:2248_1:N:0:GCCAAT 4 * 0 0 * * 0 0 AATTAATAAATAAATAATAAAATATGATAAA FFFFFFFFFFFFFFFFFFFFFFFBF/>> Writing bisulfite mapping results to zr1394_6_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_6_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4307:2432_1:N:0:GCCAAT Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15529:3323_1:N:0:GCCAAT Contig506618 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4738:5377_1:N:0:GCCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11716:5397_1:N:0:GTCAAT Contig2150 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20966:7887_1:N:0:GCCAAT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8473:10348_1:N:0:GCCAAT Contig119126 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2274:10745_1:N:0:GCCAAT Contig498074 167 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20399:11693_1:N:0:GCCAAT Contig92257 10031 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19346:11999_1:N:0:GTCAAT Contig103678 2400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6547:12646_1:N:0:ACCAAT Contig684054 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19188:12520_1:N:0:ACCAAT Contig659051 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11572:13919_1:N:0:GCCAAA Contig478839 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16797:15573_1:N:0:GCCAAT Contig556230 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9801:17175_1:N:0:GCCAAT Contig140757 10897 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11243:17604_1:N:0:GCCAAT Contig590243 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19256:18639_1:Y:0:GCCAAT Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19403:20214_1:Y:0:GCCAAT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20593:20458_1:N:0:GCCAAT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20463:21629_1:N:0:GCCAAT Contig120305 1422 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8520:22139_1:N:0:GCCAAT Contig552723 2759 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5497:24294_1:Y:0:GCCAAT Contig147859 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9622:24370_1:N:0:GCCAAT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14821:25237_1:N:0:GCCAAT Contig322890 228 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16328:25842_1:N:0:GCCAAT Contig422644 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6149:26858_1:N:0:GCCAAT Contig328672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3581:27121_1:N:0:GCCAAT Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3173:30255_1:N:0:GCCAAT Contig255461 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6161:30569_1:N:0:GCCAAT Contig574042 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10522:32133_1:N:0:GCCAAT Contig33061 5348 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7293:32599_1:N:0:GCCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14719:32650_1:N:0:GCCAAT Contig357709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9987:35116_1:N:0:GCCAAT Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14991:36772_1:N:0:GCCAAT Contig16462 154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7039:37481_1:N:0:GCCAAT Contig116942 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6671:37639_1:N:0:GCCAAT Contig52056 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13358:38830_1:N:0:GCCAAT Contig577475 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5095:40383_1:N:0:GCCAAT Contig656352 114 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13059:40549_1:N:0:GCCAAT Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9780:42196_1:N:0:GCCAAT Contig80616 9841 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19076:45238_1:N:0:GCCAAT Contig587581 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11488:45567_1:N:0:GCCAAT Contig98115 9839 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8876:48662_1:N:0:GCCAAT Contig461537 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11488:48628_1:Y:0:GCCAAT Contig146907 4368 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15775:49159_1:N:0:GCCAAT Contig678929 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19082:49354_1:N:0:GCCAAT Contig495713 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13782:49765_1:N:0:GCCAAT Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6092:50440_1:N:0:GCCAAT Contig482351 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7544:50468_1:N:0:GCCAAT Contig217988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4735:52587_1:N:0:ACCAAT Contig352074 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14455:53740_1:N:0:GCCAAT Contig2939 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17572:56648_1:N:0:GCCAAT Contig413169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14130:58461_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10337:58727_1:N:0:GCCAAT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14909:58926_1:N:0:GCCAAT Contig83076 2514 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20795:59008_1:N:0:ACCAAT Contig27922 26321 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19751:60451_1:N:0:GCCAAT Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12998:60559_1:N:0:GCCAAT Contig678904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1332:63356_1:N:0:GCCAAT Contig31987 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16560:63597_1:N:0:GCCAAT Contig515495 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19194:66493_1:N:0:GCCAAT Contig125278 3049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14096:66668_1:N:0:GCCAAT Contig16979 528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14860:67210_1:N:0:GCCAAT Contig355205 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15453:67484_1:N:0:GCCAAT Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6482:68898_1:N:0:GCCAAT Contig556305 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17636:69095_1:N:0:GCCAAT Contig244197 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20987:71586_1:N:0:GCCAAT Contig548751 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19393:74410_1:N:0:ACCAAT Contig435667 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10811:77836_1:N:0:GCCAAT Contig645560 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3714:79325_1:N:0:GCCAAT Contig41480 16093 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12348:80053_1:N:0:GCCAAT Contig246787 182 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18410:81373_1:N:0:GCCAAT Contig475284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15818:81993_1:N:0:GCCAAT Contig517605 202 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5795:83518_1:N:0:GCCAAT Contig168991 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7735:84808_1:N:0:GCCAAT Contig403649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1719:85677_1:N:0:GCCAAT Contig474689 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5205:86072_1:N:0:GCCAAT Contig109220 7304 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6434:86407_1:N:0:GCCAAT Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15258:86514_1:N:0:GCCAAT Contig108516 2834 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1873:87570_1:Y:0:GCCAAT Contig330842 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3357:90901_1:N:0:GCCAAT Contig271201 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21059:91283_1:N:0:GCCAAT Contig426846 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4353:91573_1:N:0:GCCAAT Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19502:91629_1:Y:0:GCCAAT Contig530932 126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20668:91592_1:N:0:ACCAAT Contig274954 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14285:93402_1:N:0:GCCAAT Contig11455 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17674:93697_1:N:0:GCCAAT Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10272:94152_1:N:0:GCCAAT Contig185144 414 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8960:95026_1:N:0:ACCAAT Contig36896 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15403:95147_1:N:0:GCCAAT Contig311559 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5039:95459_1:N:0:GCCAAT Contig58348 15676 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3400:95933_1:N:0:ACCAAT Contig312507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17318:98157_1:N:0:GCCAAT Contig432793 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8612:99781_1:N:0:GCCAAT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16625:99902_1:N:0:GCCAAT Contig110586 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5363:5186_1:N:0:GCCAAT Contig178703 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12720:5219_1:N:0:GCCAAT Contig66157 2381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10214:7483_1:N:0:GCCAAT Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19655:8076_1:N:0:GCCAAT Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10263:9701_1:N:0:GCCAAT Contig204898 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2649:12417_1:N:0:GCCAAT Contig26459 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3474:12277_1:N:0:GCCAAT Contig130302 777 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5342:13423_1:N:0:GCCAAT Contig296840 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13656:13910_1:N:0:GCCAAT Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8438:15868_1:Y:0:GACAAT Contig648674 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4801:16155_1:N:0:GCCAAT Contig251749 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10786:17020_1:N:0:GCCAAT Contig309850 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8173:18554_1:N:0:GCCAAT Contig517245 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17713:19279_1:N:0:GCCAAT Contig131018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9539:22488_1:N:0:GCCAAT Contig91197 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17023:22406_1:N:0:GCCAAT Contig28675 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10857:23488_1:N:0:GCCAAT Contig445420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4574:23649_1:N:0:GCCAAT Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17053:24431_1:Y:0:GCCAAT Contig577461 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12389:24744_1:N:0:GCCAAT Contig129104 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3646:25975_1:N:0:GCCAAT Contig344269 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18468:27398_1:N:0:GCCAAT Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10063:29303_1:N:0:GCCAAT Contig43736 3408 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21319:29918_1:N:0:GCCAAT Contig83807 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18494:31813_1:N:0:GCCAAT Contig582114 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3804:32234_1:N:0:GCCAAT Contig259732 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4196:32214_1:N:0:GCCAAT Contig2957 6150 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3426:33653_1:N:0:GCCAAT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9049:33501_1:Y:0:GCCAAT Contig518918 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19859:33785_1:N:0:GCCAAT Contig199762 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5111:35117_1:N:0:GCCAAT Contig645560 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10963:35547_1:N:0:ACCAAT Contig18496 2542 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10967:40738_1:N:0:GCCAAT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3448:41096_1:N:0:GCCAAT Contig75914 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19929:41346_1:N:0:GCCAAT Contig115685 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12147:42210_1:N:0:GCCAAT Contig358347 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16326:42001_1:N:0:GCCAAT Contig430595 1127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14761:44436_1:N:0:GCCAAT Contig313185 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7513:45097_1:N:0:GCCAAT Contig507888 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4157:45446_1:N:0:GCCAAT Contig612477 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7950:47509_1:N:0:GCCAAT Contig689438 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2853:48823_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19501:48857_1:N:0:GCCAAT Contig243635 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16120:49822_1:N:0:GCCAAT Contig253992 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16447:49754_1:N:0:GCCAAT Contig120793 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4524:50497_1:N:0:GCCAAT Contig149010 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18004:50603_1:N:0:GCCAAT Contig178294 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10158:52658_1:N:0:GCCAAT Contig347876 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15821:52895_1:N:0:GCCAAT Contig102269 211 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2502:53344_1:N:0:GCCAAT Contig537054 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17991:54633_1:N:0:GCCAAT Contig130988 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10038:55266_1:N:0:GCCAAT Contig477671 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17073:55564_1:Y:0:GCCAAT Contig40386 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13529:57108_1:N:0:GCCAAT Contig118231 4046 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5802:59427_1:N:0:GCCAAT Contig26872 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10670:59767_1:N:0:GCCAAT Contig96738 1297 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8563:62022_1:N:0:GCCAAT Contig34909 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12971:62893_1:N:0:GCCAAT Contig191809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13425:64621_1:N:0:GCCAAT Contig618665 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10442:66400_1:N:0:GCCAAT Contig108435 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4075:66549_1:N:0:GCCAAT Contig676640 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4533:66614_1:N:0:GCCAAT Contig400853 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6360:66547_1:N:0:GCCAAT Contig201157 696 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1830:67172_1:N:0:GCCAAT Contig418792 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2599:67057_1:N:0:GCCAAT Contig170379 1862 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8432:71832_1:N:0:GCCAAT Contig435586 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13695:71969_1:N:0:GCCAAT Contig129461 2288 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12787:73079_1:N:0:GCCAAT Contig580345 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9659:73325_1:N:0:GCCAAT Contig496868 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11296:73904_1:N:0:GCCAAT Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10527:75113_1:N:0:GCCAAT Contig26429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21317:77357_1:N:0:GCCAAT Contig601451 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13445:77710_1:N:0:GCCAAT Contig408976 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2729:78035_1:N:0:GCCAAT Contig634091 253 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1972:78601_1:N:0:GCCAAT Contig77471 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4561:78998_1:N:0:GCCAAT Contig179467 381 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11800:78958_1:N:0:GCCAAT Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14693:80577_1:N:0:GCCAAT Contig485005 116 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18166:80722_1:N:0:GCCAAT Contig396659 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3911:81910_1:N:0:GCCAAT Contig112264 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4078:83935_1:N:0:GCCAAT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7057:85945_1:N:0:GCCAAT Contig223024 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8853:88475_1:N:0:GCCAAT Contig275026 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15591:89745_1:N:0:GCCAAT Contig616331 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15241:90628_1:N:0:GCCAAT Contig407016 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2788:91666_1:N:0:GCCAAT Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8310:92851_1:N:0:GCCAAT Contig115979 1636 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2891:93038_1:N:0:GCCAAT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20888:94639_1:N:0:GCCAAT Contig674537 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9224:96044_1:N:0:GCCAAT Contig24955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12956:96330_1:N:0:GCCAAT Contig690364 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15832:97190_1:N:0:GCCAAT Contig313614 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14654:98299_1:N:0:GCCAAT Contig687594 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2387:98755_1:N:0:GCCAAT Contig108134 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20647:98957_1:N:0:ACCAAT Contig608295 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8047:99478_1:N:0:ACCAAT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7471:2170_1:N:0:GCCAAT Contig646766 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18214:4740_1:N:0:ACCAAT Contig270330 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11500:6291_1:N:0:GCCAAT Contig186797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2934:6590_1:N:0:GCCAAT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15313:7142_1:N:0:GCCAAT Contig662585 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16962:7493_1:N:0:GCCAAT Contig165074 801 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9483:7767_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8981:8785_1:N:0:GCCAAT Contig4393 6480 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2568:11184_1:N:0:ACCAAT Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9188:11889_1:N:0:GCCAAT Contig535794 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16192:12919_1:N:0:GCCAAT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15926:14169_1:N:0:GCCAAT Contig54465 4388 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20327:14276_1:Y:0:GCCAAT Contig79195 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12872:14513_1:N:0:GCCAAT Contig202307 669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8288:15313_1:N:0:GCCAAT Contig522781 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15573:15866_1:N:0:GCCAAT Contig194173 3482 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12454:17155_1:N:0:ACCAAT Contig573773 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3730:17824_1:N:0:GCCAAT Contig687221 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8986:19222_1:N:0:GCCAAT Contig322973 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2016:21447_1:Y:0:GCCAAT Contig58853 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13398:21753_1:Y:0:GCCAAT Contig500347 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10119:22707_1:N:0:GCCAAT Contig14880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2789:23063_1:N:0:GCCAAT Contig151355 377 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15472:23134_1:N:0:GCCAAT Contig571751 6344 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18104:23185_1:N:0:GCCAAT Contig60760 4951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5510:23475_1:N:0:GCCAAT Contig291512 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3276:23792_1:N:0:GCCAAT Contig214611 624 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18688:23922_1:Y:0:GCCAAT Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5929:24625_1:N:0:GCCAAT Contig85861 3249 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10076:24518_1:N:0:GCCAAT Contig607250 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2943:27081_1:N:0:GCCAAT Contig189406 294 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7030:27124_1:N:0:GCCAAT Contig32746 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9039:27444_1:N:0:GCCAAT Contig15332 10619 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14839:27492_1:N:0:GCCAAT Contig10205 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18674:27299_1:N:0:GCCAAT Contig562526 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4202:28082_1:N:0:GCCAAT Contig43461 429 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5126:28524_1:N:0:GCCAAT Contig589742 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7508:28926_1:N:0:GCCAAT Contig205529 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17061:29212_1:N:0:GCCAAT Contig562041 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20661:29707_1:N:0:GCCAAT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16583:29911_1:N:0:GCCAAT Contig560797 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17091:29904_1:N:0:GCCAAT Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12997:34689_1:N:0:GCCAAT Contig25075 1592 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8725:34986_1:N:0:GCCAAT Contig672524 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1564:35761_1:N:0:GCCAAT Contig359681 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5349:35880_1:N:0:GCCAAT Contig289747 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7967:37452_1:N:0:GCCAAT Contig636175 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4678:39295_1:Y:0:GCCAAT Contig397837 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16737:39759_1:N:0:GCCAAT Contig585029 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15336:42112_1:N:0:GCCAAT Contig464631 263 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13803:43969_1:N:0:GCCAAT Contig641369 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14200:43976_1:N:0:GCCAAT Contig73895 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5167:44066_1:N:0:GCCTAT Contig140852 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18128:45910_1:N:0:GCCAAT Contig587311 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3876:47179_1:N:0:GCCAAT Contig283385 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13661:47299_1:N:0:GCCAAT Contig26837 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10420:49939_1:N:0:GCCAAT Contig184321 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13113:50231_1:N:0:GCCAAT Contig183258 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15918:50020_1:N:0:GCCAAT Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5864:50690_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10782:50699_1:N:0:GCCAAT Contig472047 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18023:54155_1:N:0:GCCAAT Contig317564 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17114:54874_1:N:0:GCCAAT Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7758:55489_1:N:0:GCCAAT Contig344923 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21023:56586_1:Y:0:GCCAAT Contig25628 13807 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6288:56974_1:N:0:GCCAAT Contig457940 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5834:57059_1:N:0:GCCAAT Contig312699 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7729:60055_1:N:0:GCCAAT Contig672824 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20492:61289_1:N:0:GCCAAT Contig8329 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20648:63334_1:N:0:GCCAAT Contig608213 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10059:66631_1:N:0:GCCAAT Contig372614 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16541:68501_1:N:0:GCCAAT Contig295550 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20351:69536_1:N:0:GCCAAT Contig593515 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9511:70994_1:N:0:GCCAAT Contig101769 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4227:73705_1:N:0:GCCAAT Contig587871 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7226:75216_1:N:0:GCCAAT Contig534889 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19204:75061_1:N:0:GCCAAT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3264:76321_1:Y:0:GCCAAT Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4626:77662_1:N:0:ACCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4726:83400_1:N:0:GCCAAT Contig339301 191 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14403:83893_1:N:0:GCCAAT Contig190743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15963:84835_1:N:0:GCCAAT Contig219546 1328 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1483:85368_1:N:0:GCCAAT Contig23432 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2735:86108_1:N:0:GCCAAT Contig227193 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5022:87873_1:N:0:GCCAAT Contig516323 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7837:87943_1:N:0:GCCAAT Contig426579 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8235:88121_1:N:0:GCCAAT Contig538004 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11527:88996_1:N:0:GCCAAT Contig297351 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2361:89137_1:N:0:GCCAAT Contig154455 868 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19007:93281_1:N:0:GCCAAT Contig351641 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5609:94859_1:N:0:GCCAAT Contig666880 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5268:96300_1:N:0:GCCAAT Contig665959 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11337:96439_1:N:0:GCCAAT Contig601866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14295:96770_1:N:0:GCCAAT Contig77043 2599 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13145:97589_1:N:0:GCCAAT Contig2520 40088 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18913:97521_1:N:0:GCCAAT Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15779:2727_1:N:0:GCCAAT Contig256074 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2305:3393_1:N:0:GCCAAT Contig79291 1945 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20407:6444_1:N:0:ACCAAT Contig541884 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3795:7643_1:N:0:GCCAAT Contig39969 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1732:8281_1:N:0:GCCAAT Contig687910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4410:13134_1:N:0:GCCAAT Contig298755 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14428:15288_1:N:0:GCCAAT Contig555048 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18078:15337_1:N:0:GCCAAT Contig417492 164 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16828:15903_1:N:0:GCCAAT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4774:17029_1:N:0:GCCAAT Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2672:17302_1:N:0:GCCAAT Contig681583 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3895:17713_1:N:0:GCCAAT Contig601866 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8448:18547_1:Y:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1704:19850_1:N:0:TCCAAT Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8091:21389_1:N:0:GCCAAT Contig474507 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8628:22016_1:N:0:GCCAAT Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19691:22168_1:N:0:GCCAAT Contig443256 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8298:23567_1:N:0:GCCAAT Contig175645 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8925:25096_1:N:0:GCCAAT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17357:25101_1:N:0:GCCAAT Contig617999 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12256:25653_1:N:0:GCCAAT Contig63228 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2748:25923_1:N:0:GCCAAT Contig500975 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20726:27944_1:N:0:GCCAAT Contig516232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14755:29651_1:N:0:GCCAAT Contig135488 2214 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8391:29755_1:N:0:GCCAAT Contig302384 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18488:29871_1:N:0:GCCAAT Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8881:30318_1:N:0:GCCAAT Contig602782 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19082:31853_1:N:0:GCCAAT Contig106883 2344 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4951:34069_1:N:0:GCCAAT Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12242:34142_1:N:0:GCCAAT Contig478725 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17410:34085_1:N:0:GCCAAT Contig129592 1269 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11091:34566_1:N:0:GCCAAT Contig50451 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1627:37674_1:N:0:GCCAAT Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20801:38078_1:N:0:ACCAAT Contig357217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19297:38372_1:N:0:GCCAAT Contig162200 684 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13668:39261_1:N:0:GCCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16149:39473_1:Y:0:GCCAAT Contig278967 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2958:41953_1:N:0:GCCAAT Contig542589 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8394:42778_1:N:0:ACCAAT Contig358684 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7561:49422_1:N:0:GCCAAT Contig79784 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21021:51190_1:N:0:GCCAAT Contig176595 588 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19773:52397_1:N:0:GCCAAT Contig182269 1258 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16700:52708_1:N:0:GCCAAT Contig456466 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13171:56551_1:N:0:GCCAAT Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17249:56573_1:N:0:GCCAAT Contig389819 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13119:57244_1:N:0:GCCAAT Contig422858 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9144:59846_1:N:0:GCCAAT Contig253470 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15376:60163_1:N:0:GCCAAT Contig519335 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17777:61793_1:N:0:GCCAAT Contig151809 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20276:62999_1:N:0:GCCAAT Contig166015 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7142:63916_1:N:0:GCCAAT Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14968:64750_1:N:0:ACCAAT Contig612676 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17099:64931_1:N:0:GCCAAT Contig286842 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9609:66628_1:N:0:GCCAAT Contig188825 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8325:67052_1:N:0:GCCAAT Contig183198 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18135:67438_1:N:0:GCCAAT Contig295938 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16626:68589_1:N:0:GCCAAT Contig464175 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9108:71594_1:N:0:GCCAAT Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12977:71628_1:N:0:GCCAAT Contig92062 2086 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14013:72415_1:N:0:GCCAAT Contig227193 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13549:72720_1:N:0:GCCAAT Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19233:74529_1:N:0:GCCAAG Contig351218 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3743:74899_1:N:0:GCCAAT Contig543071 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9767:74892_1:N:0:GCCAAT Contig468956 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3876:75157_1:Y:0:GCCAAT Contig120333 1825 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6362:75246_1:N:0:GCCAAT Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3140:75726_1:N:0:GCCAAT Contig2335 8527 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16845:78247_1:N:0:GCCAAT Contig44139 12314 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16601:79878_1:N:0:GCCAAT Contig64446 6861 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4501:80160_1:N:0:GCCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14127:82875_1:N:0:GCCAAT Contig489135 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11971:83203_1:N:0:GCCAAT Contig325954 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9345:85031_1:N:0:GCCAAT Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16529:85161_1:N:0:GCCAAT Contig376799 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10837:87606_1:N:0:GCCAAT Contig217140 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8855:87946_1:N:0:GCCAAT Contig475826 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15479:91413_1:N:0:GCCAAT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12212:91766_1:N:0:GCCAAT Contig475394 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16092:91952_1:N:0:GCCAAT Contig396271 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20061:91834_1:N:0:GCCAAT Contig577424 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18964:92707_1:N:0:ACCAAT Contig14252 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14948:93492_1:N:0:GCCAAT Contig233955 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12058:93531_1:N:0:GCCAAT Contig110344 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3901:96667_1:Y:0:GCCAAT Contig135041 2545 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8551:97170_1:N:0:GCCAAT Contig351207 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6134:97429_1:N:0:ACCAAT Contig92547 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18534:97734_1:N:0:GCCAAT Contig130735 14292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2211:97855_1:N:0:GCCAAT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12400:98647_1:N:0:GCCAAT Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9164:98968_1:N:0:GCCAAT Contig55261 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16594:98859_1:N:0:GCCAAT Contig555661 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6667:2417_1:N:0:GCCAAT Contig682837 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8328:2585_1:N:0:GCCAAT Contig212500 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1463:3057_1:N:0:GCCAAT Contig499198 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5828:3158_1:N:0:GCCAAT Contig384101 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2674:3326_1:N:0:GCCAAT Contig41818 27532 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10282:4483_1:N:0:GCCAAT Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2850:4772_1:N:0:GCCAAT Contig216978 969 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17896:5701_1:N:0:GCCAAT Contig622127 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3519:5853_1:N:0:GCCAAT Contig352720 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12474:5803_1:N:0:GCCAAT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20740:7477_1:N:0:GCCAAT Contig670368 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19811:8500_1:Y:0:GCCAAT Contig617075 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6639:8626_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1825:8814_1:N:0:GCCAAT Contig457 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5201:9560_1:N:0:GCCAAT Contig277957 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14796:10136_1:N:0:GCCAAT Contig361059 488 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7348:10404_1:N:0:GCCAAT Contig188966 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17848:11547_1:N:0:GCCAAT Contig471101 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10664:13784_1:N:0:GCCAAT Contig2335 8527 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20945:13982_1:N:0:GCCAAT Contig543610 144 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4054:14350_1:N:0:GCCAAT Contig470709 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12966:14304_1:N:0:GCCAAT Contig670368 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13966:15637_1:N:0:GCCAAT Contig37235 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18762:15673_1:N:0:GCCAAT Contig85250 15112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18837:16994_1:N:0:GCCAAT Contig7132 3549 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9155:19120_1:Y:0:GCCAAT Contig49118 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10217:20593_1:N:0:GCCAAT Contig278850 183 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7625:22398_1:N:0:GCCAAT Contig544208 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6686:22746_1:N:0:GCCAAT Contig545761 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9162:22655_1:N:0:GCCAAT Contig27279 7904 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1735:23191_1:N:0:GCCAAT Contig338273 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7951:23379_1:N:0:GCCAAT Contig442804 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10684:24592_1:N:0:GCCAAT Contig206165 837 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2578:26651_1:N:0:GCCAAT Contig187889 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17386:27194_1:N:0:GCCAAT Contig258908 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2627:28204_1:N:0:GCCAAT Contig6087 4603 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7011:30438_1:N:0:GCCAAT Contig175337 412 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12613:30901_1:N:0:GCCAAT Contig667920 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7627:32441_1:N:0:GCCAAT Contig23470 509 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2858:32542_1:N:0:GCCAAT Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1346:34562_1:N:0:GCCAAT Contig7715 7901 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11698:37244_1:N:0:GCCAAT Contig134532 1211 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7441:37714_1:N:0:GCCAAT Contig150484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18250:39201_1:N:0:GCCAAT Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11246:39986_1:N:0:GCCAAT Contig64204 11775 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12793:39870_1:N:0:GCCAAT Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9070:42206_1:N:0:GCCAAT Contig82234 6918 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14519:44225_1:N:0:GCCAAT Contig300348 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21243:44516_1:Y:0:GCCAAT Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16442:44788_1:N:0:GCCAAT Contig24727 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15090:45530_1:N:0:GCCAAT Contig297742 456 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21113:46663_1:N:0:GCCAAT Contig285919 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11057:48489_1:N:0:GCCAAT Contig411997 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20435:49041_1:Y:0:GCCAAT Contig46794 32139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9490:53133_1:N:0:GCAAAT Contig40418 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6439:54595_1:N:0:GCCAAT Contig366202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15678:54508_1:N:0:GCCAAT Contig650985 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15332:56849_1:N:0:GCCAAT Contig282728 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17777:58639_1:N:0:GCCAAT Contig257870 119 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17074:60963_1:N:0:GCCAAT Contig364343 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13742:61789_1:N:0:GCCAAT Contig357403 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13558:63195_1:N:0:GCCAAT Contig338032 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14373:63362_1:N:0:GCCAAT Contig527689 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12939:64685_1:N:0:GCCAAT Contig312699 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18925:64577_1:N:0:GCCAAT Contig209256 434 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5702:65230_1:N:0:GCCAAT Contig553457 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8472:65581_1:N:0:GCCAAT Contig262974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18463:66559_1:N:0:GCCAAT Contig10909 942 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20150:66965_1:N:0:GCCAAT Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12895:69615_1:N:0:GCCAAT Contig80438 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1863:70048_1:N:0:GCCAAT Contig590332 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19569:70163_1:N:0:GCCAAT Contig144013 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1434:70818_1:N:0:GCCAAT Contig2764 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2817:71488_1:N:0:GCCAAT Contig359899 206 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18243:73206_1:N:0:GCCAAT Contig201140 758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16007:76027_1:N:0:GCCAAT Contig191043 5010 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19535:76718_1:N:0:GCCAAT Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5740:78089_1:N:0:ACCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7451:78239_1:N:0:GCCAAT Contig72295 29928 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14558:78404_1:N:0:GCCAAT Contig51851 912 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15397:78436_1:N:0:ACCAAT Contig177898 441 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17840:79035_1:N:0:GCCAAT Contig317778 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12595:79910_1:N:0:GCCAAT Contig158630 468 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7276:80041_1:N:0:GCCAAT Contig57612 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19436:80758_1:N:0:GCCAAT Contig501879 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19193:81240_1:N:0:GCCAAT Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14708:81603_1:N:0:GCCAAT Contig90346 2242 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19275:82433_1:N:0:GCCAAT Contig64741 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15534:82689_1:Y:0:GCCAAT Contig418792 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17826:82750_1:N:0:GCCAAT Contig198606 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3206:83389_1:N:0:GCCAAT Contig129326 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16782:84708_1:N:0:GCCAAT Contig522239 569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4431:85094_1:N:0:GCCAAT Contig234447 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5366:86661_1:N:0:GCCAAT Contig104764 2726 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8180:88061_1:N:0:GCCAAT Contig627386 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17898:88773_1:N:0:GCCAAT Contig243581 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20258:88939_1:Y:0:GCCAAT Contig451349 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8794:89774_1:N:0:GCCAAT Contig529763 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7368:92410_1:Y:0:GCCAAT Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8572:92324_1:Y:0:GCCAAT Contig307143 758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16729:95432_1:N:0:GCCAAT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13859:96794_1:N:0:GCCAAT Contig198393 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7175:99592_1:N:0:GCCAAT Contig342888 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19081:99762_1:Y:0:GCCAAT Contig70725 5498 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2783:3560_1:N:0:GCCAAT Contig420088 358 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8324:4457_1:N:0:GCCAAT Contig174714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17344:5904_1:N:0:GCCAAT Contig531061 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1567:10349_1:N:0:GCCAAT Contig687715 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21229:11990_1:Y:0:GCCAAT Contig640966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7759:12439_1:N:0:GCCAAT Contig272891 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3283:14582_1:N:0:GCCAAT Contig347393 17160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14263:16519_1:N:0:GCCAAT Contig179593 427 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21076:16898_1:N:0:GCCAAT Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6007:17889_1:N:0:GCCAAT Contig500347 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9779:18103_1:Y:0:TCCAAT Contig569195 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2829:19083_1:N:0:GCCAAT Contig438180 214 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13910:19245_1:N:0:GCCAAT Contig419906 612 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18669:20186_1:Y:0:GCCAAT Contig156879 503 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7764:20531_1:N:0:GCCAAA Contig352562 373 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20592:20600_1:N:0:GCCAAT Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20021:21988_1:Y:0:GCCAAT Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14598:22121_1:N:0:GCCAAT Contig85226 8762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19028:22321_1:N:0:GCCAAT Contig344803 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14033:23376_1:N:0:GCCAAT Contig130581 1711 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3426:23711_1:N:0:GCCAAT Contig112762 874 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6665:24836_1:N:0:GCCAAT Contig19269 9130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14103:26103_1:N:0:GCCAAT Contig342888 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10043:27080_1:N:0:GCCAAT Contig73932 3872 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2071:27842_1:N:0:GCCAAT Contig222128 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10109:27875_1:N:0:GCCAAT Contig561977 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6427:28412_1:N:0:GCCAAT Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11519:30089_1:N:0:GCCAAT Contig493539 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12304:31389_1:N:0:GCCAAT Contig8439 19447 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6145:31687_1:N:0:ACCAAT Contig83134 3351 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3454:31889_1:N:0:GCCAAT Contig79714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17119:31873_1:N:0:GCCAAT Contig95008 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18765:31875_1:N:0:GCCAAT Contig561295 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2688:33207_1:N:0:GCCAAT Contig393611 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21281:33707_1:N:0:GCCAAT Contig545615 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15522:34131_1:N:0:GCCAAT Contig431977 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12368:34803_1:N:0:GCCAAT Contig552602 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14551:35317_1:N:0:GCCAAT Contig300088 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12320:35762_1:N:0:GCCAAT Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8526:37080_1:N:0:GCCAAT Contig208882 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8491:37512_1:N:0:GCCAAT Contig304769 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11202:37768_1:N:0:GCCAAT Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6921:38281_1:N:0:GCCAAT Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9671:38679_1:Y:0:GCCAAT Contig313895 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19317:39332_1:N:0:GCCAAT Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19874:39856_1:N:0:GCCAAT Contig283821 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10737:40512_1:N:0:GCCAAT Contig51452 7799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6700:41260_1:N:0:GCCAAT Contig99042 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12578:41578_1:Y:0:GCCAAT Contig390868 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17964:42498_1:N:0:GCCACT Contig533566 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11913:42981_1:N:0:GCCAAT Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8004:43958_1:Y:0:GCCAAT Contig63676 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8469:44730_1:N:0:GCCAAT Contig326583 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10171:46095_1:N:0:GCCAAT Contig202566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10261:46201_1:N:0:GCCAAT Contig12538 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21182:46302_1:N:0:GCCAAT Contig560447 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14135:49593_1:N:0:GCCAAT Contig107155 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8738:51167_1:N:0:GCCAAT Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20714:52404_1:N:0:GCCAAT Contig39170 9123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2925:52606_1:N:0:GCCAAT Contig23681 386 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11432:53001_1:N:0:GCCAAT Contig657683 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14941:53426_1:N:0:GCCAAT Contig425694 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6590:53703_1:N:0:GCCAAT Contig246292 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20866:53671_1:N:0:GCCAAT Contig154878 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13460:55423_1:N:0:GCCAAT Contig167571 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7635:58886_1:N:0:GCCAAT Contig433433 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19670:59757_1:N:0:GCCAAT Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8604:62581_1:N:0:GCCAAT Contig175627 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8690:62660_1:N:0:GCCAAT Contig336089 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14770:62959_1:N:0:GCCAAT Contig459989 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14227:63655_1:N:0:GCCAAT Contig232151 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8524:64758_1:N:0:GCCAAT Contig212938 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7906:65303_1:N:0:GCCAAT Contig628967 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6754:69601_1:N:0:GCCAAT Contig125524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1344:69967_1:N:0:GTCAAT Contig14138 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19690:71219_1:N:0:GCCAAT Contig562656 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13556:71480_1:N:0:GCCAAT Contig96316 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13948:71761_1:N:0:GCCAAT Contig306044 192 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15278:72388_1:N:0:GCCAAT Contig44839 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19265:72281_1:N:0:GCCAAT Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16492:73181_1:N:0:GCCAAT Contig115209 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12243:74500_1:N:0:GCCAAT Contig828 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14685:75440_1:N:0:GCCAAT Contig27610 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7185:77665_1:N:0:GCCAAT Contig504312 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11043:78022_1:N:0:GCCAAT Contig549704 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14512:78441_1:N:0:GCCAAT Contig211945 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2470:79319_1:N:0:GCCAAT Contig500797 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16821:80417_1:N:0:GCCAAT Contig81055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17510:80825_1:N:0:GCCAAT Contig500304 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11583:81033_1:N:0:GCCAAT Contig358684 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11458:81943_1:N:0:GCCAAT Contig631419 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7544:82675_1:N:0:GCCAAT Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15860:83530_1:N:0:GCCCAT Contig408476 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17157:83539_1:N:0:GCCAAT Contig645517 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13138:84156_1:N:0:GCCAAT Contig264486 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17055:84096_1:N:0:GCCAAT Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9070:84399_1:N:0:GCCAAT Contig252221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13718:85306_1:N:0:GCCAAT Contig10933 538 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4266:87207_1:N:0:GCCAAT Contig261473 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3857:88164_1:N:0:GCCAAT Contig489577 301 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10783:90025_1:N:0:ACCAAT Contig538030 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6415:92231_1:Y:0:GCCAAT Contig167897 662 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1522:92479_1:N:0:GCCAAT Contig582114 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6265:93697_1:N:0:GCCAAT Contig571851 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12899:94475_1:N:0:GCCAAT Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9672:95521_1:N:0:GCCAAT Contig626206 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13851:96833_1:N:0:GCCAAT Contig80188 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13091:98097_1:N:0:GCCAAT Contig522741 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3066:99178_1:N:0:GCCAAT Contig111970 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5097:2250_1:N:0:GCCAAT Contig542597 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20122:2300_1:N:0:GCCAAT Contig259414 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10066:4654_1:N:0:GCCAAT Contig88675 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5519:5630_1:N:0:GCCAAT Contig340106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9540:5747_1:N:0:GCCAAT Contig105687 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8462:5860_1:N:0:GCCAAT Contig14012 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1664:6518_1:N:0:GCCAAT Contig670785 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9079:9736_1:N:0:GCCAAT Contig20766 20864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10144:11220_1:N:0:GCCAAT Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14539:11097_1:N:0:GCCAAT Contig693850 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12142:13900_1:N:0:GCCAAT Contig363869 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10101:15737_1:N:0:GCCAAT Contig544948 93 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 632921 (63.29%) aligned 0 times 142795 (14.28%) aligned exactly 1 time 224284 (22.43%) aligned >1 times 36.71% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 686715 (68.67%) aligned 0 times 133124 (13.31%) aligned exactly 1 time 180161 (18.02%) aligned >1 times 31.33% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 687786 (68.78%) aligned 0 times 132731 (13.27%) aligned exactly 1 time 179483 (17.95%) aligned >1 times 31.22% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 633114 (63.31%) aligned 0 times 142934 (14.29%) aligned exactly 1 time 223952 (22.40%) aligned >1 times 36.69% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_6_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_6_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 354776 Mapping efficiency: 35.5% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2064695 Total methylated C's in CpG context: 208308 Total methylated C's in CHG context: 8711 Total methylated C's in CHH context: 109771 Total methylated C's in Unknown context: 41 Total unmethylated C's in CpG context: 52776 Total unmethylated C's in CHG context: 407488 Total unmethylated C's in CHH context: 1277641 Total unmethylated C's in Unknown context: 382 C methylated in CpG context: 79.8% C methylated in CHG context: 2.1% C methylated in CHH context: 7.9% C methylated in Unknown context (CN or CHN): 9.7% Bismark completed in 0d 7h 42m 19s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_7_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_7_s456_trimmed.fq.gz to zr1394_7_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_7_s456_trimmed.fq.gz to zr1394_7_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_7_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_7_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_7_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_7_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1323:2170_1:N:0:CAGATC 0 Contig33411_CT_converted 1088 42 31M * 0 0 GTTGTATTATGTATTTTTAAAATATAGTGTT FFFFFFFFFFFFFFFFFFFFFFFFFF>> Writing bisulfite mapping results to zr1394_7_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_7_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5550:2194_1:N:0:CAGATC Contig196668 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5198:2639_1:N:0:CAGATC Contig338717 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10501:4788_1:N:0:CAGATC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2561:5106_1:N:0:CAGATC Contig316573 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7235:5643_1:N:0:CAGATC Contig199154 7170 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1999:6548_1:N:0:CAGATC Contig91197 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17267:8624_1:N:0:CAGATC Contig290008 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9381:8871_1:N:0:CAGATC Contig321766 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12700:8997_1:N:0:CAGATC Contig74148 2216 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2725:9369_1:N:0:CAGATA Contig13974 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6706:10161_1:N:0:CAGATC Contig6743 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9846:10636_1:N:0:CAGATC Contig93920 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13249:10823_1:N:0:CAGATC Contig135624 1246 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6378:11493_1:N:0:CAGATC Contig23711 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3968:11566_1:N:0:CAGATC Contig507526 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5794:11878_1:N:0:CAGATC Contig73537 4007 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5419:12199_1:N:0:CAGATC Contig26708 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10100:12317_1:N:0:CAGATC Contig361661 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2539:12707_1:N:0:CAGATC Contig106309 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10164:12997_1:N:0:CAGATC Contig253274 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15838:13173_1:N:0:CAGATC Contig533505 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11171:14027_1:N:0:CAGATC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10175:14984_1:N:0:CAGATC Contig52402 2649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11408:14964_1:N:0:CAGATC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7085:15690_1:N:0:CAGATC Contig424032 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1467:16672_1:N:0:CAGATC Contig680558 153 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13755:17297_1:N:0:CAGATC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19442:18839_1:Y:0:CAGATC Contig182 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3958:19353_1:N:0:CAGATC Contig73937 5659 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9788:19925_1:Y:0:CAGATC Contig9160 891 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12375:21364_1:N:0:CAGATC Contig143225 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3655:21504_1:N:0:CAGATC Contig226265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13398:22100_1:N:0:CAGATC Contig1074 17973 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1382:22399_1:N:0:CAGATC Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7764:22288_1:N:0:CAGATC Contig114604 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18191:24653_1:N:0:CAGATC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5444:25389_1:N:0:CAGATC Contig125291 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2010:25940_1:N:0:CAGATC Contig585329 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6459:25853_1:N:0:CAGATC Contig156039 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2511:27513_1:N:0:CAGATC Contig314528 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3102:27559_1:N:0:CAGATC Contig482536 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19395:27993_1:N:0:CAGATC Contig442128 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11840:29232_1:N:0:CAGATC Contig515991 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15081:29012_1:N:0:CAGATC Contig677813 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14339:29526_1:N:0:CAGATC Contig145646 2008 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4057:29949_1:N:0:CAGATC Contig138248 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15217:30378_1:N:0:CAGATC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8561:31235_1:N:0:CAGATC Contig484119 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10387:31124_1:N:0:CAGATC Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16028:31419_1:N:0:CAGATC Contig162157 1204 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8208:32050_1:N:0:CAGATC Contig425715 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16508:32388_1:N:0:CAGATC Contig512172 184 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9116:33008_1:N:0:CAGATC Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20081:34503_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8383:35248_1:N:0:CAGATC Contig305496 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13629:35059_1:N:0:CAGATC Contig43187 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10177:35993_1:N:0:CAGATC Contig233955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17710:37925_1:N:0:CAGATC Contig162481 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14100:38323_1:N:0:CAGATC Contig642407 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5067:39855_1:N:0:CAGATC Contig34895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14632:41051_1:N:0:CAGATC Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13502:42020_1:N:0:CAGATC Contig328672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8869:42590_1:N:0:CAGATC Contig687159 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10538:45737_1:N:0:CAGATC Contig464883 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11503:46094_1:N:0:CAGATC Contig243525 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4384:46444_1:N:0:CAGATC Contig381606 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15066:48152_1:Y:0:CAGATC Contig47360 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1643:49059_1:N:0:CAGATC Contig283762 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7064:49120_1:N:0:CAGATC Contig435 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4955:49855_1:N:0:CAGATC Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10507:51323_1:Y:0:CAGATC Contig374822 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18554:51310_1:Y:0:CAGATC Contig458853 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3055:53346_1:N:0:CAGATC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11941:53323_1:N:0:CAGATC Contig52375 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8542:54853_1:N:0:CAGATC Contig389666 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6426:55033_1:N:0:CAGATC Contig209694 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6195:55389_1:N:0:CAGATC Contig398607 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9135:56877_1:N:0:CAGATC Contig307270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7944:57066_1:N:0:CAGATC Contig266248 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12125:58780_1:N:0:CAGATC Contig452846 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13216:59581_1:N:0:CAGATC Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17392:60141_1:N:0:CAGATC Contig107186 1331 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1177:62697_1:N:0:CAGATC Contig8526 1378 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17799:63384_1:Y:0:CAGATC Contig217751 740 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5954:63507_1:N:0:CAGATC Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3474:63933_1:N:0:CAGATC Contig501279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10398:64177_1:N:0:CAGATC Contig3564 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13842:64351_1:N:0:CAGATC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3567:64685_1:N:0:CAGATC Contig441188 246 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5832:64904_1:N:0:CAGATC Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12872:64826_1:N:0:CAGATC Contig186395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15632:64971_1:N:0:CAGATC Contig511930 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3517:67215_1:Y:0:CAGATC Contig365277 169 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18820:70224_1:N:0:CAGATC Contig250105 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14223:70420_1:N:0:CAGATC Contig86685 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3846:72302_1:N:0:CAGATC Contig89694 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1693:73721_1:N:0:CAGATC Contig629725 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9155:73742_1:N:0:CAGATC Contig143225 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2999:75155_1:N:0:CAGATC Contig54083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20501:76124_1:N:0:CAGATC Contig549259 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1956:77989_1:N:0:CAGATC Contig11461 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5826:79400_1:N:0:CAGATC Contig43880 6705 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13801:79956_1:N:0:CAGATC Contig84116 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8889:81211_1:N:0:CAGATC Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16545:82083_1:N:0:CAGATC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8532:82333_1:N:0:CAGATC Contig141297 1424 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5095:82569_1:N:0:CAGATC Contig169842 390 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15711:82552_1:N:0:CAGATC Contig41258 6706 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4465:82955_1:N:0:CAGATC Contig154019 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9960:83578_1:Y:0:CAGAAC Contig34926 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14392:85693_1:N:0:CAGATC Contig433896 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7877:86592_1:N:0:CAGATC Contig656558 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14440:87221_1:N:0:CAGATC Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11910:87338_1:N:0:CAGATC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2924:88425_1:N:0:CAGATC Contig666478 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16703:88446_1:N:0:CAGATC Contig91752 1445 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13486:89666_1:N:0:CAGATC Contig219894 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11637:90211_1:N:0:CAGATC Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10032:91736_1:N:0:CAGATC Contig386291 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11419:92544_1:N:0:CAGATC Contig58165 2669 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19254:93076_1:N:0:CAGATC Contig645320 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21237:94639_1:N:0:CAGATC Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7768:95955_1:N:0:CAGATC Contig492902 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9472:95996_1:N:0:CAGATC Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8499:96320_1:N:0:CAGATC Contig97227 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1435:96531_1:N:0:CAGATC Contig94502 9183 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3848:96871_1:N:0:CAGATC Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6947:97029_1:N:0:CAGATC Contig226962 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15548:97103_1:N:0:CAGATC Contig70608 7289 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17884:98833_1:N:0:CAGATC Contig373735 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5759:99064_1:N:0:CAGATC Contig551546 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3794:99765_1:N:0:CAGATC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12637:100312_1:N:0:CAGATN Contig623261 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8508:2618_1:N:0:CAGATC Contig294468 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13256:4035_1:N:0:CAGATC Contig412673 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17457:5332_1:N:0:CAGATC Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20075:7791_1:N:0:CAGATC Contig452118 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2940:10640_1:N:0:CATATC Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9280:11270_1:N:0:CAGATC Contig447798 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20016:11440_1:N:0:CAGATC Contig306106 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5598:11585_1:N:0:CAGATC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5183:14017_1:N:0:CAGATC Contig391776 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3961:14482_1:N:0:CAGATC Contig108924 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8503:14371_1:N:0:CAGATC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8451:15991_1:N:0:CAGATC Contig306873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4913:16026_1:N:0:CAGATC Contig24506 2294 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16491:17153_1:N:0:CAGATC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10058:17554_1:N:0:CAGATC Contig416040 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20232:17635_1:N:0:CAGATC Contig53377 7882 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16426:18800_1:N:0:CAGATC Contig426118 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12718:20004_1:N:0:CAGATC Contig12043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10245:21446_1:N:0:CAGATC Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13229:21313_1:N:0:CAGATC Contig547215 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14797:21434_1:N:0:CAGATC Contig388199 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11085:22159_1:N:0:CAGATC Contig185168 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9171:22273_1:N:0:CAGATC Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11544:23192_1:N:0:CAGATC Contig52112 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4891:24649_1:N:0:CAGATC Contig382561 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4117:24803_1:Y:0:CAGATC Contig143760 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5411:24838_1:N:0:CAGATC Contig628263 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9959:25267_1:N:0:CAGATC Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12355:27897_1:Y:0:CAGATC Contig22621 6888 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8531:28663_1:N:0:CAGATC Contig643484 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10387:28606_1:N:0:CAGATC Contig234286 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15289:29270_1:Y:0:CAGATC Contig178677 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17315:32528_1:N:0:CAGATC Contig222262 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17608:32986_1:N:0:CAGATC Contig26550 4240 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8325:34151_1:N:0:CAGATC Contig525149 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6999:35425_1:N:0:CAGATC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10652:35292_1:N:0:CAGATC Contig79658 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8101:36386_1:N:0:CAGATC Contig609558 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17551:36800_1:N:0:CAGATC Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8184:37188_1:N:0:CAGATC Contig222165 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20126:37503_1:N:0:CAGATC Contig530919 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16391:38496_1:N:0:CAGATC Contig12290 1826 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1334:39042_1:N:0:CAGATC Contig578468 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14537:39635_1:N:0:CAGATC Contig208520 2180 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9016:40681_1:N:0:CAGATC Contig668746 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4494:44155_1:N:0:CAGATC Contig112911 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14816:44370_1:N:0:CAGATC Contig272891 132 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19575:44661_1:Y:0:CAGATC Contig7472 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9350:44866_1:N:0:CAGATC Contig637676 526 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5464:46260_1:N:0:CAGATC Contig4684 3608 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9406:47286_1:N:0:CAGATC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9873:49032_1:N:0:CAGATC Contig662469 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19977:49407_1:N:0:CAGATC Contig81775 1030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20262:49556_1:N:0:CAGATC Contig278209 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16052:49767_1:N:0:CAGATC Contig193635 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7857:51577_1:N:0:CAGATC Contig268473 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17219:51535_1:N:0:CAGATC Contig486421 603 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1662:53095_1:Y:0:CAGATC Contig45026 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18332:53032_1:N:0:CAGATC Contig347632 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15907:55970_1:N:0:CAGATC Contig110257 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19734:57877_1:N:0:CAGATC Contig407900 176 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13208:59691_1:N:0:CAGATC Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1151:59861_1:Y:0:CAGATC Contig445780 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7997:60868_1:N:0:CAGATC Contig45223 8679 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12506:60839_1:N:0:CAGATC Contig586662 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8180:64125_1:N:0:CAGATC Contig80017 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17221:66389_1:N:0:CAGATC Contig463348 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12510:66762_1:N:0:CAGATC Contig175238 982 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10962:67469_1:N:0:CAGATC Contig284545 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7985:67726_1:N:0:CCGATC Contig481475 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18123:68037_1:N:0:CAGATC Contig57360 6454 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13862:68453_1:N:0:CAGATC Contig600635 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18616:69247_1:N:0:CAGATC Contig300296 927 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6817:70449_1:N:0:CAGATC Contig367388 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2798:71169_1:N:0:CAGATC Contig417251 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12371:71728_1:N:0:CAGATC Contig509878 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11637:72028_1:N:0:CAGATC Contig229690 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8976:72377_1:N:0:CAGATC Contig185650 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3297:73573_1:N:0:CAGATC Contig163960 894 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12025:75364_1:N:0:CAGATC Contig25625 54539 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16421:75359_1:N:0:CAGATC Contig536969 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8553:75578_1:N:0:CAGATC Contig204863 435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5537:77111_1:N:0:CAGATC Contig49539 1240 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4647:77275_1:N:0:CAGATC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2412:77685_1:N:0:CAGATC Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18094:77648_1:N:0:CAGATC Contig322890 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12850:78431_1:N:0:CAGATC Contig114627 1146 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16704:78846_1:N:0:CAGATC Contig663733 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9147:79530_1:N:0:CAGATC Contig176933 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15718:81744_1:Y:0:CAGATC Contig58165 2667 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9955:82031_1:N:0:CAGATC Contig156811 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4732:82822_1:N:0:CAGATC Contig199221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11039:83129_1:Y:0:CAGATC Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15329:84021_1:Y:0:CAGATC Contig163485 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6864:85176_1:N:0:CAGATC Contig694265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11561:85392_1:N:0:CAGATC Contig359762 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12044:85524_1:N:0:CAGATC Contig321481 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19552:85857_1:N:0:CAGATC Contig18803 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16488:87898_1:N:0:CAGATC Contig253396 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13953:89940_1:N:0:CAGATC Contig414085 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15822:90024_1:N:0:CAGATC Contig60519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9162:90819_1:N:0:CAGATC Contig62593 6523 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20386:91322_1:N:0:CAGATC Contig19582 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12117:91512_1:N:0:CAGATC Contig1221 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5718:92470_1:N:0:CAGATC Contig4709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18257:94503_1:N:0:CAGATC Contig91898 1630 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1282:94755_1:N:0:CAGATC Contig335318 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6159:95239_1:N:0:CAGATC Contig394138 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2786:95435_1:N:0:CAGATC Contig242743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7092:96154_1:N:0:CAGATC Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19810:97781_1:N:0:CAGATC Contig114537 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7139:98031_1:N:0:CAGATC Contig454517 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3657:99793_1:N:0:CAGATC Contig25055 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5085:99992_1:N:0:CAGATC Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7628:2731_1:N:0:CAGATC Contig232917 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7597:4157_1:N:0:CAGATC Contig344247 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2986:5814_1:N:0:CAGATC Contig512745 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8361:7535_1:N:0:CAGATC Contig50982 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17074:7680_1:N:0:CAGATC Contig505973 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10697:9715_1:N:0:CAGATC Contig445423 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11681:10792_1:N:0:CAGATC Contig363923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19075:10826_1:N:0:CAGATC Contig491066 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3046:11536_1:N:0:CAGATC Contig669933 180 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7099:12155_1:N:0:CAGATC Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11277:12103_1:N:0:CAGATC Contig539184 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7775:12940_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19752:12847_1:N:0:CAGATC Contig396672 201 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15739:13126_1:N:0:CAGATC Contig114749 893 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13562:14419_1:Y:0:CAGATC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11431:14903_1:N:0:CAGATC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10429:15484_1:N:0:CAGATC Contig20024 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17356:16444_1:N:0:CAGATC Contig71265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5281:17216_1:N:0:CAGATC Contig44198 20731 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10468:17089_1:N:0:CAGATC Contig587126 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8633:18870_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9014:19909_1:N:0:CAGATC Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7235:20533_1:N:0:CAGATC Contig97914 7571 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8119:23170_1:N:0:CAGATC Contig57756 1003 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10878:23196_1:N:0:CAGATC Contig55295 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19029:23031_1:N:0:CAGATC Contig398607 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1551:24978_1:N:0:CAGATC Contig361733 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2297:24761_1:N:0:CAGATC Contig342029 1009 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16596:24822_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9296:25967_1:N:0:CAGATC Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19702:28716_1:N:0:CAGATC Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6381:29476_1:N:0:CAGATC Contig204092 805 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18739:29456_1:N:0:CAGATC Contig312699 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6997:29662_1:N:0:CAGATC Contig248177 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13185:29529_1:N:0:CAGATC Contig3320 14714 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7736:30299_1:N:0:CAGATC Contig164743 1154 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12148:31891_1:N:0:CAGATC Contig407847 356 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3740:32859_1:N:0:CAGATC Contig207614 3543 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2592:33498_1:N:0:CAGATC Contig30522 17043 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3591:33362_1:N:0:CAGATC Contig3531 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18183:33328_1:N:0:CAGATC Contig171283 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9560:34295_1:Y:0:CAGATC Contig244248 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18752:34548_1:N:0:CAGATC Contig118838 924 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8743:35018_1:N:0:CAGATC Contig20438 629 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7829:37254_1:N:0:CAGATC Contig40624 28133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19378:38686_1:N:0:CAGATC Contig67821 3136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19269:39018_1:N:0:CAGATC Contig87822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18937:39708_1:N:0:CAGATC Contig162988 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2673:41286_1:N:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7652:43361_1:N:0:CAGATC Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8424:45056_1:N:0:CAGATC Contig602782 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16469:47221_1:N:0:CAGATC Contig252034 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8028:47432_1:N:0:CAGATC Contig396442 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8819:47368_1:N:0:CAGATC Contig426638 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20335:49345_1:N:0:CAGATC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20828:49424_1:Y:0:CAGATC Contig396322 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12004:50519_1:N:0:CAGATC Contig367216 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19997:51550_1:N:0:CAGATC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10495:51917_1:N:0:CAGATC Contig495191 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9922:52710_1:Y:0:CAGATC Contig469894 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11670:53827_1:N:0:CAGATC Contig224935 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1649:55077_1:Y:0:CAGATC Contig206993 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13296:55485_1:N:0:CAGATC Contig624865 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5491:56144_1:N:0:CAGATA Contig364623 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17854:56093_1:N:0:CAGATC Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8786:56938_1:N:0:CAAATC Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8890:57615_1:N:0:CAGATC Contig77553 1928 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11184:58188_1:N:0:CAGATC Contig644048 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10528:59479_1:N:0:CAGATC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17632:59371_1:N:0:CAGATC Contig103678 2400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15748:60327_1:N:0:CAGATC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13069:60753_1:N:0:CAGATC Contig71923 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1663:61175_1:N:0:CAGATC Contig684398 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21012:62531_1:N:0:CAGATC Contig518570 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16722:63395_1:N:0:CAGATC Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19127:65612_1:N:0:CAGATC Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3167:66406_1:N:0:CAGATC Contig360086 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12105:66999_1:N:0:CAGATC Contig204151 2347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14223:67566_1:N:0:CAGATC Contig133256 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11617:69594_1:N:0:CAGATC Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10501:70570_1:N:0:CAGATC Contig69363 2725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11576:70732_1:N:0:CAGATC Contig241723 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17964:70693_1:N:0:CAGATC Contig289124 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10751:71089_1:N:0:CAGATC Contig677947 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15874:71139_1:N:0:CAGATC Contig98325 1133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15616:74204_1:N:0:CAGATC Contig590598 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14756:74369_1:N:0:CAGATC Contig391217 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14857:75575_1:N:0:CAGATC Contig107041 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17666:76286_1:N:0:CAGATC Contig694265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15147:77925_1:N:0:CAGATC Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20360:79106_1:N:0:CAGATC Contig595413 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16501:81409_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18848:81497_1:N:0:CAGATC Contig9393 3228 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20194:81914_1:N:0:CAGATC Contig504043 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18368:83669_1:N:0:CAGATC Contig400856 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17664:84086_1:N:0:CAGATC Contig262614 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1790:85181_1:N:0:CAGATC Contig474887 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16991:85762_1:N:0:CAGATC Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14523:86136_1:N:0:CAGATC Contig102838 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15909:86061_1:N:0:CAGATC Contig224317 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12930:86527_1:N:0:TAGATC Contig594123 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3441:88302_1:N:0:CAGATC Contig110404 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5445:93030_1:N:0:CAGATC Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16749:93529_1:N:0:CAGATC Contig659141 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20803:94396_1:N:0:CAGATC Contig184436 390 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2466:95136_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11438:96858_1:N:0:CAGATC Contig79298 11257 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15062:97030_1:N:0:CAGATC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15822:97657_1:N:0:CAGATC Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13485:98516_1:N:0:CAGATC Contig159633 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1753:99042_1:N:0:CAGATC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17537:3857_1:N:0:CAGATC Contig316024 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12150:5347_1:N:0:CAGATC Contig643484 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2861:5659_1:N:0:CAGATC Contig182413 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8914:8371_1:N:0:CAGATC Contig642394 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8286:8895_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8555:9893_1:N:0:CAGATC Contig547875 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12164:13946_1:N:0:CAGATC Contig432122 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12403:14793_1:N:0:CAGATC Contig676702 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8443:15022_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7993:15281_1:N:0:CAGATC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18050:15483_1:N:0:CAGATC Contig76372 4475 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18983:15305_1:N:0:CAGATC Contig303714 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16000:15820_1:N:0:CAGATC Contig523923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15617:18489_1:N:0:CAGATC Contig615224 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18586:20133_1:N:0:CAGATC Contig339796 198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13146:20632_1:N:0:CAGATC Contig75910 2081 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4508:22144_1:N:0:CAGATC Contig689507 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18027:22802_1:N:0:CAGATC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15633:25028_1:N:0:CAGATC Contig134308 3965 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8465:26239_1:N:0:CAGATC Contig151645 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7567:26334_1:N:0:CAGATC Contig689054 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6876:26678_1:N:0:CAGATC Contig8096 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21149:26624_1:Y:0:CAGATC Contig529185 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6079:28140_1:N:0:CAGATC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5363:28582_1:N:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14584:29749_1:N:0:CAGATC Contig61791 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21111:29743_1:N:0:CAGATC Contig44839 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15800:30112_1:N:0:CAGATC Contig45483 25335 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17251:30704_1:N:0:CAGATC Contig563744 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10414:31664_1:N:0:CAGATC Contig647063 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11255:32636_1:Y:0:CAGCTC Contig636500 3328 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11602:33038_1:N:0:CAGATC Contig170622 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16734:33292_1:N:0:CAGATC Contig640495 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12814:34624_1:N:0:CAGATC Contig158288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20232:35102_1:N:0:CAGATC Contig509074 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2690:37429_1:N:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11826:39642_1:N:0:CAGATC Contig310183 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18644:40493_1:N:0:CAGATC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3835:40600_1:Y:0:CAGATC Contig584227 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16792:41628_1:N:0:CAGATC Contig457674 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19138:43588_1:Y:0:CAGATC Contig203603 896 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7352:44309_1:N:0:CAGATC Contig212938 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13146:44451_1:N:0:CAGATC Contig136310 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10375:44989_1:N:0:CAGATC Contig329381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9833:45660_1:N:0:CAGATC Contig21674 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10364:45924_1:N:0:CAGATC Contig158024 722 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4964:46145_1:N:0:CAGATC Contig28388 488 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13610:48430_1:N:0:CAGATC Contig35645 988 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10525:49579_1:N:0:CAGATC Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17269:50654_1:N:0:CAGATC Contig141879 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21315:51299_1:N:0:CAGATC Contig134324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13951:51563_1:N:0:CAGATC Contig126402 1058 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10310:52569_1:N:0:CAGATC Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17131:53939_1:N:0:CAGATC Contig9202 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11762:54026_1:N:0:CAGATC Contig36268 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19236:54216_1:N:0:CAGATC Contig399618 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16390:54959_1:N:0:CAGATC Contig106010 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3288:55015_1:N:0:CAGATC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3696:55127_1:N:0:CAGATC Contig461707 141 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7866:55859_1:N:0:CAGATC Contig78294 9375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17250:56637_1:N:0:CAGATC Contig255054 163 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10953:57282_1:N:0:CAGATC Contig164027 720 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12042:57396_1:N:0:CAGATC Contig459540 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11984:58825_1:N:0:CAGATC Contig588585 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20068:61024_1:Y:0:CCGATC Contig542597 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2907:63476_1:N:0:CAGATC Contig17332 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3460:63595_1:N:0:CAGATC Contig279849 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20822:63873_1:Y:0:CAGATC Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11421:64768_1:N:0:CAGATC Contig247351 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6777:65050_1:N:0:CAGATC Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8332:66004_1:N:0:CAGATC Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2714:66285_1:N:0:CAGATC Contig116847 800 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6210:67461_1:N:0:CAGATC Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14560:68292_1:N:0:CAGATC Contig92117 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19685:68893_1:Y:0:CAGATC Contig160772 1044 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17724:69777_1:N:0:CAGATC Contig348762 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3069:71644_1:N:0:CAGATC Contig593745 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19955:72565_1:N:0:CAGATC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5557:73231_1:N:0:CAGATC Contig404794 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13033:74536_1:N:0:CAGATC Contig447920 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21098:75393_1:Y:0:CAGATC Contig287021 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3883:76701_1:N:0:CAGATC Contig16985 786 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1917:77212_1:N:0:CAGATC Contig92081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8215:77608_1:N:0:CAGATC Contig133382 958 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18014:77901_1:N:0:CAGATC Contig656675 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8440:81163_1:N:0:CAGATC Contig9424 2288 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11238:83403_1:N:0:TAGATC Contig101716 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11162:83586_1:N:0:CAGATC Contig99259 1851 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15080:83704_1:N:0:CAGATC Contig69145 14808 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9388:84471_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3230:84591_1:N:0:CAGATC Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9259:84962_1:N:0:CAGATC Contig203603 895 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13308:84843_1:N:0:CAGATC Contig538223 407 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17055:85102_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5375:85470_1:N:0:CAGATC Contig514804 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6255:85665_1:N:0:CAGATC Contig14455 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11500:85614_1:N:0:CAGATC Contig540856 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2641:86147_1:N:0:CAGATC Contig7234 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8736:86094_1:N:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18621:86008_1:Y:0:CAGATC Contig645732 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15038:86946_1:N:0:CAGATC Contig525149 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5594:87137_1:N:0:CAGATC Contig392116 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5603:88211_1:N:0:CAGATC Contig600482 193 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11780:89480_1:N:0:CAGATC Contig450262 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13227:89549_1:N:0:CAGATC Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18038:90290_1:N:0:CAGATC Contig662118 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5930:91998_1:N:0:CAGATC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9140:92890_1:N:0:CAGATC Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8963:94101_1:N:0:CAGATC Contig121424 6724 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9481:99107_1:Y:0:CAGATC Contig12043 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20410:99660_1:N:0:CAGATC Contig314765 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17027:99753_1:N:0:CAGATC Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16138:100151_1:N:0:CAGATC Contig571181 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11472:3333_1:N:0:CAGATC Contig104305 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14791:4242_1:N:0:CAGATC Contig212583 286 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15144:4653_1:N:0:CAGATC Contig682423 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13207:6405_1:N:0:CAGATC Contig214773 691 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4930:7023_1:N:0:CAGATC Contig695027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:21217:8401_1:N:0:CAGATC Contig114477 1779 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12423:10209_1:N:0:CAGATC Contig82672 4104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20126:10128_1:N:0:CAGATC Contig240578 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3937:10798_1:Y:0:CAGATC Contig186897 2212 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8908:11996_1:N:0:CAGATC Contig145338 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14378:13078_1:N:0:CAGATC Contig120078 8647 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16873:15096_1:N:0:CAGATC Contig650299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18819:17282_1:N:0:CAGATC Contig61927 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3811:19756_1:N:0:CAGATC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19043:20362_1:N:0:CAGATC Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1861:21642_1:N:0:CAGATC Contig365270 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15691:23188_1:N:0:CAGATC Contig612911 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20146:23082_1:N:0:CAGATC Contig33681 15404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4297:23895_1:N:0:CAGATC Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2841:24677_1:N:0:CAGATC Contig615096 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6666:26634_1:N:0:CAGATC Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12771:26879_1:N:0:CAGATC Contig17285 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17709:27197_1:N:0:CAGATC Contig279849 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12675:27930_1:N:0:CAGATC Contig365030 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3172:28418_1:N:0:CAGATC Contig154775 915 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8705:28634_1:Y:0:CAGATC Contig396501 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11515:28621_1:N:0:CAGATC Contig4083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6298:29584_1:N:0:CAGATC Contig128909 3375 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10701:29647_1:N:0:CAGATC Contig171920 2190 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5836:31826_1:N:0:CAGATC Contig97019 11513 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14465:32508_1:N:0:CAGATC Contig434401 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1814:34458_1:N:0:CAGATC Contig533816 187 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19085:34363_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3843:35865_1:N:0:CAGATC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19576:36301_1:N:0:CAGATC Contig202265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15931:37083_1:N:0:CAGATC Contig251907 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2250:37618_1:N:0:CAGATC Contig14505 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13719:38414_1:Y:0:CACATC Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19900:38251_1:N:0:CAGATC Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20915:39806_1:N:0:CAGATC Contig91774 2259 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16643:40524_1:N:0:CAGATC Contig77767 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14293:41515_1:N:0:CAGATC Contig57503 17605 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14513:44153_1:N:0:CAGATC Contig254224 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6145:45916_1:N:0:CAGATC Contig51452 7799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12795:46137_1:Y:0:CAGATC Contig418547 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9430:47951_1:N:0:CAGATC Contig590598 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3166:48367_1:N:0:CAGATC Contig240874 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16636:48714_1:N:0:CAGATC Contig7715 7903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19811:52205_1:N:0:CAGATC Contig457780 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11612:53810_1:N:0:CAGATC Contig34871 9605 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20195:53974_1:N:0:CAGATC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14176:55924_1:N:0:CAGATC Contig66496 5911 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11413:56776_1:N:0:CAGATC Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11579:56753_1:N:0:CAGATC Contig119692 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15485:58182_1:N:0:CAGATC Contig23210 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1505:59445_1:N:0:CAGATC Contig434401 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14569:59390_1:N:0:CAGATC Contig224731 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10308:59549_1:N:0:CAGATC Contig360647 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13838:60055_1:N:0:CAGATC Contig499198 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2645:61890_1:N:0:CAGATC Contig433430 227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17009:62825_1:Y:0:CAGATC Contig174872 1683 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13934:66246_1:N:0:CAGATC Contig53948 2791 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11113:68052_1:N:0:CAGATC Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17754:69593_1:N:0:CAGATC Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7124:70324_1:N:0:CAGATC Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9785:70272_1:N:0:CAGATC Contig233301 264 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4502:70538_1:N:0:CAGATC Contig652400 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6437:71068_1:N:0:CAGATC Contig412615 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12679:71474_1:N:0:CAGATC Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20615:71709_1:N:0:CAGATC Contig275571 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5549:71929_1:N:0:CAGATC Contig59232 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8242:72014_1:Y:0:CAGATC Contig64210 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4965:72715_1:N:0:CAGATC Contig579847 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14061:73128_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2613:73834_1:N:0:CAGATC Contig685730 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14040:76095_1:N:0:CAGATC Contig622798 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2267:76774_1:N:0:CAGATC Contig15987 6188 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17721:77071_1:N:0:CAGATC Contig303333 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8663:79208_1:N:0:CAGATC Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12937:83079_1:N:0:CAGATC Contig274502 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2024:84784_1:N:0:CAGATC Contig28910 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12684:84995_1:Y:0:CAGATC Contig447977 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18184:85549_1:N:0:CAGATC Contig53330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16643:86146_1:N:0:CAGATC Contig403649 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20916:86751_1:N:0:CAGATC Contig63224 5728 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7057:89669_1:N:0:CAGATC Contig314563 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5879:90257_1:Y:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13761:90833_1:N:0:CAGATC Contig618782 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5159:91070_1:N:0:CAGATC Contig103678 2400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17228:91389_1:N:0:CAGATC Contig610450 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4530:91569_1:Y:0:CAGCTC Contig242531 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12352:93155_1:N:0:CAGATC Contig294724 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14522:93081_1:N:0:CAGATC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8770:94052_1:N:0:CAGATC Contig313374 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10581:94748_1:N:0:CAGATC Contig67161 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5869:95109_1:N:0:CAGATC Contig87567 32744 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8239:95079_1:N:0:CAGATC Contig682629 629 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3428:95949_1:N:0:CAGATC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8236:97455_1:N:0:CAGATC Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3030:98583_1:N:0:CAGATC Contig4002 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12153:98781_1:N:0:CAGATC Contig219337 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7419:2500_1:N:0:CAGATC Contig175337 410 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18638:5859_1:N:0:CAGATC Contig347393 17159 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5869:8058_1:N:0:CAGATC Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20016:8083_1:N:0:CAGATC Contig189307 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9363:8920_1:N:0:CAGATC Contig602181 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13032:8757_1:N:0:CAGATC Contig339139 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16648:8845_1:N:0:CAGATC Contig60519 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2254:10000_1:N:0:CAGATC Contig367421 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7691:10024_1:N:0:CAGATC Contig502332 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15335:10706_1:N:0:CAGATC Contig65531 2830 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5455:12503_1:N:0:CAGATC Contig362504 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20185:12577_1:N:0:CAGATC Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18712:13776_1:Y:0:CAGATC Contig13629 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19113:14005_1:N:0:CAGATC Contig128657 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15905:14995_1:N:0:CAGATC Contig405135 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17185:16193_1:N:0:CAGATC Contig48797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10436:16642_1:N:0:CAGATC Contig102838 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4838:16919_1:N:0:CAGATC Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1776:17135_1:N:0:CAGATC Contig34827 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4217:17389_1:N:0:CAGATC Contig144154 1406 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5007:17364_1:N:0:CAGATC Contig299734 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16442:17928_1:N:0:CAGATC Contig477525 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5125:18906_1:N:0:CAGATC Contig131068 642 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5345:20397_1:N:0:CAGATC Contig166192 3451 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12971:20323_1:N:0:CAGATC Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10743:20800_1:N:0:CAGATC Contig213055 788 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19464:21026_1:N:0:CAGATG Contig684238 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3590:22951_1:N:0:CAGATC Contig300088 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18871:22937_1:N:0:CAGATC Contig50451 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20300:23820_1:N:0:CAGATC Contig345940 313 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6387:24647_1:N:0:CAGATC Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4376:27033_1:N:0:CAGATC Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17421:28195_1:N:0:CAGATC Contig528577 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20794:28231_1:Y:0:CAGATC Contig43636 33977 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16160:28908_1:N:0:CAGATC Contig93920 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10491:29023_1:N:0:CAGATC Contig521501 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17482:30227_1:N:0:CAGATC Contig599781 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12914:30408_1:N:0:CAGATC Contig539289 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15490:31140_1:N:0:CAGATC Contig28721 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2593:31351_1:N:0:CAGATC Contig153067 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5470:31849_1:N:0:CAGATC Contig292488 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5971:32052_1:N:0:CAGATC Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16440:32167_1:N:0:CAGATC Contig65921 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20115:32748_1:N:0:CAGATC Contig474092 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10082:32978_1:N:0:CAGATC Contig319245 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3425:33115_1:N:0:CAGATC Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3252:34943_1:N:0:CAGATC Contig76987 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11862:38380_1:N:0:CAGATC Contig254674 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5365:39163_1:N:0:CAGATC Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7159:39221_1:Y:0:CAGTTC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11474:40186_1:N:0:CAGATC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6049:40396_1:N:0:CAGATC Contig687871 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2368:40768_1:N:0:CAGATC Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9555:43113_1:N:0:CAGATC Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13326:43443_1:N:0:CAGATC Contig183189 607 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13289:43907_1:N:0:CAGATC Contig354683 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4612:44243_1:N:0:CAGATC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13217:45343_1:N:0:CAGATC Contig14110 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12954:46419_1:N:0:CAGATC Contig286268 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12666:47023_1:N:0:CAGATC Contig130274 1431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6932:48410_1:N:0:CAGATC Contig334572 118 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10417:49207_1:N:0:CAGATC Contig244799 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19518:49141_1:N:0:CAGATC Contig274314 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4123:50324_1:N:0:CAGATC Contig103363 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5742:50856_1:N:0:CAGATC Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19675:51235_1:N:0:CAGATC Contig25284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16526:51913_1:N:0:CAGATC Contig166416 643 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20596:52668_1:N:0:CAGATC Contig306873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12390:55113_1:N:0:CAGATC Contig263863 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3722:55998_1:N:0:CAGATC Contig481509 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20186:58652_1:N:0:CAGATC Contig313374 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8970:58984_1:N:0:CAGATC Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4452:59146_1:N:0:CAGATC Contig182870 937 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2942:60792_1:N:0:CAGATC Contig425768 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7124:61419_1:N:0:CAGATC Contig73937 5660 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11159:61444_1:N:0:CAGATC Contig10933 535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13626:61462_1:N:0:CAGATC Contig586083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1865:61894_1:N:0:CAGATC Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7011:63568_1:N:0:CAGATC Contig576752 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15572:63847_1:N:0:CAGATC Contig350161 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2274:64393_1:N:0:CAGATC Contig159175 359 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3804:64647_1:N:0:CAGATC Contig396931 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5006:65201_1:N:0:CAGATC Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18506:65135_1:N:0:CAGATC Contig67821 3137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15301:65869_1:N:0:CAGATC Contig61327 7542 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20118:65869_1:N:0:CAGATC Contig242743 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:7968:67116_1:N:0:CAGATC Contig546916 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3815:67528_1:N:0:CAGATC Contig380476 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14349:67538_1:N:0:CAGATC Contig87468 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6654:68599_1:N:0:CAGATC Contig139112 1052 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4430:68833_1:N:0:CAGATC Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6777:72618_1:N:0:CAGATC Contig571751 6346 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6232:72953_1:N:0:CAGATC Contig50880 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19120:73782_1:N:0:CAGATC Contig667707 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19029:74947_1:N:0:CAGATC Contig101623 1441 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14310:75869_1:N:0:CAGATC Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15131:76756_1:N:0:CAGATC Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16005:77053_1:N:0:CAGATC Contig449234 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6733:78096_1:N:0:CAGATC Contig428474 108 1000000 reads; of these: 1000000 (1000000100.00 reads; of these:% ) were unpaired; of these: 1000000 (682554 (68.26%) aligned 0 times 123649 (12.36%100.00) aligned exactly 1 time% ) were unpaired; of these: 193797 (681620 (19.3868.16%%) aligned >1 times) aligned 0 times 31.74 %123724 overall alignment rate ( 12.37%) aligned exactly 1 time 194656 (19.47%) aligned >1 times 31.84% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 634966 (63.50%) aligned 0 times 131096 (13.11%) aligned exactly 1 time 233938 (23.39%) aligned >1 times 36.50% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 635443 (63.54%) aligned 0 times 131591 (13.16%) aligned exactly 1 time 232966 (23.30%) aligned >1 times 36.46% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_7_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_7_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 327795 Mapping efficiency: 32.8% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2002393 Total methylated C's in CpG context: 275174 Total methylated C's in CHG context: 8721 Total methylated C's in CHH context: 99298 Total methylated C's in Unknown context: 54 Total unmethylated C's in CpG context: 52432 Total unmethylated C's in CHG context: 404434 Total unmethylated C's in CHH context: 1162334 Total unmethylated C's in Unknown context: 405 C methylated in CpG context: 84.0% C methylated in CHG context: 2.1% C methylated in CHH context: 7.9% C methylated in Unknown context (CN or CHN): 11.8% Bismark completed in 0d 8h 1m 31s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_8_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_8_s456_trimmed.fq.gz to zr1394_8_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_8_s456_trimmed.fq.gz to zr1394_8_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_8_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_8_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_8_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_8_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1180:2121_1:Y:0:ACTTGA 4 * 0 0 * * 0 0 GTTTTATAATATATGTATTATGAGTTTTT FFFBF/B/>> Writing bisulfite mapping results to zr1394_8_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_8_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3128:5514_1:N:0:ACTTGA Contig499779 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2260:7597_1:N:0:ACTTGA Contig221125 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12949:8596_1:N:0:ACTTGA Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9395:8918_1:N:0:ACTTGA Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10294:8823_1:N:0:ACTTGA Contig105564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13919:8788_1:N:0:ACTTGA Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10663:11301_1:N:0:ACTTGA Contig557455 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11221:11586_1:N:0:ACTTGA Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7507:12337_1:Y:0:ACTTGA Contig130287 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6079:13951_1:N:0:ACTTGA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4168:14645_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12100:14539_1:N:0:ACTTGA Contig145056 1110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18771:15215_1:N:0:ACTTGA Contig234227 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9070:16921_1:N:0:ACTTGA Contig503023 642 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1326:17236_1:N:0:ACTTGA Contig245850 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6018:21706_1:N:0:ACTTGA Contig165074 799 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4705:23097_1:N:0:ACTTGA Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19781:24129_1:N:0:ACTTGA Contig450553 163 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5331:25740_1:N:0:ACTTGA Contig604877 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14242:29167_1:N:0:ACTTGA Contig218921 674 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11437:29489_1:N:0:ACTTGA Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14025:32432_1:N:0:ACTTGA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18630:34939_1:N:0:ACTTGA Contig175705 398 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2678:35126_1:N:0:ACTTGA Contig631287 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9889:35257_1:N:0:ACTTGA Contig258391 340 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13675:35494_1:Y:0:ACTTGA Contig166416 643 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9554:35815_1:N:0:ACTTGA Contig293387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12106:39098_1:N:0:ACTTGA Contig365493 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13329:40543_1:N:0:ACTTGA Contig114348 2166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12499:41403_1:N:0:ACTTGA Contig104139 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15026:41322_1:N:0:ACTTGA Contig306106 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4215:43216_1:N:0:ACTTGA Contig91918 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12057:44663_1:N:0:ACTTGA Contig355300 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1528:46479_1:N:0:ACTTGA Contig42679 28071 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15011:47364_1:N:0:ACTTGA Contig656202 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4394:47904_1:N:0:ACTTGA Contig15316 1614 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4480:51337_1:N:0:ACTTGA Contig10508 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20193:51646_1:N:0:ACTTGA Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7741:52711_1:Y:0:ACTTGA Contig89386 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5484:52919_1:N:0:ACTTGA Contig510640 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9181:53852_1:N:0:ACTTGA Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11647:53850_1:N:0:ACTTGA Contig179593 429 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14293:53976_1:N:0:ACTTGA Contig696586 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16980:54360_1:N:0:ACTTGA Contig445743 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2414:60101_1:N:0:ACTTGA Contig368581 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13342:60137_1:Y:0:GCTTGA Contig138423 7686 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8056:61284_1:N:0:ACTTGA Contig10599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8035:64928_1:Y:0:ACTTGA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14246:66774_1:N:0:ACTTGA Contig33104 9808 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13233:69952_1:N:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16087:72022_1:N:0:ACTTGA Contig250337 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16976:73705_1:N:0:ACTTGA Contig587871 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7132:73883_1:N:0:ACTTGA Contig200966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14900:76434_1:N:0:ACTTGA Contig426367 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5214:76961_1:N:0:ACTTGA Contig629945 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20121:77220_1:N:0:ACTTGA Contig42227 994 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20118:78103_1:N:0:ACTTGA Contig696494 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16120:79214_1:N:0:ACTTGA Contig628534 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12352:79866_1:N:0:ACTTGA Contig36605 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12676:81549_1:N:0:ACTTGA Contig95662 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7798:82949_1:N:0:ACTTGA Contig320337 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17190:82932_1:N:0:ACTTGA Contig316753 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12495:83311_1:Y:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16900:84212_1:N:0:ACTTGA Contig651375 150 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15384:84319_1:N:0:ACTTGA Contig471101 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1937:86562_1:N:0:ACTTGA Contig607819 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13417:86649_1:N:0:ACTTGA Contig638895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15137:87925_1:N:0:ACTTGA Contig235004 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6013:88390_1:N:0:ACTTGA Contig312699 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14702:90321_1:N:0:ACTTGA Contig552723 2758 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20910:90832_1:N:0:ACTTGA Contig38121 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18597:91235_1:Y:0:ACTTGA Contig178781 158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9688:93150_1:N:0:ACTTGA Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3677:94110_1:N:0:ACTTGA Contig677001 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14092:94323_1:N:0:ACTTGA Contig151288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9084:95653_1:N:0:ACTTGA Contig170624 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11756:98301_1:N:0:ACTTGA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8951:99878_1:N:0:ACTTGA Contig138979 1416 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5537:2903_1:N:0:ACTTGA Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8700:3114_1:N:0:ACTTGA Contig35645 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19325:5767_1:N:0:ACTTGA Contig266377 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4936:6982_1:N:0:ACTTGA Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17486:6996_1:N:0:ACTTGA Contig528184 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15279:11068_1:N:0:ACTTGA Contig128926 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10777:11781_1:N:0:ACTTGA Contig540856 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12809:14158_1:N:0:ACTTGA Contig158704 1089 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1823:15183_1:N:0:ACTTGA Contig688524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1963:15868_1:N:0:ACTTGA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20288:17707_1:N:0:ACTTGA Contig298268 946 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17772:18114_1:N:0:ACTTGA Contig125432 6824 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16049:20140_1:N:0:ACTTGA Contig579664 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6972:21749_1:Y:0:ATTTGA Contig631354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18360:21791_1:N:0:ACTTAA Contig52709 3816 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9141:23144_1:N:0:ACTTGA Contig3421 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21285:23283_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12000:23874_1:N:0:ACTTGA Contig343139 126 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20221:24771_1:N:0:ACTTGA Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5410:25490_1:N:0:ACTTGA Contig635664 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18110:25708_1:N:0:ACTTGA Contig275407 185 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14499:27766_1:N:0:ACTTGA Contig82566 2504 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20557:30379_1:Y:0:ACTTGA Contig379292 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8301:35679_1:N:0:ACTTGA Contig5935 5864 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4972:36534_1:N:0:ACTTGA Contig117198 662 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15905:37193_1:N:0:ACTTGA Contig23164 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13095:38849_1:N:0:ACTTGA Contig141297 1423 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1848:39588_1:N:0:ACTTGA Contig46139 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15072:40331_1:Y:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3129:40504_1:N:0:ACTTGA Contig541884 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5426:40719_1:N:0:ACTTGA Contig15934 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8593:40593_1:N:0:ACTTGA Contig50320 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14245:40564_1:N:0:ACTTGA Contig157663 3161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19491:40540_1:N:0:ACTTGA Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5070:44078_1:N:0:ACTTGA Contig480777 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8917:44001_1:N:0:ACTTGA Contig49687 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19773:44197_1:N:0:ACTTGA Contig212741 570 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18318:45034_1:N:0:ACTTGA Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7394:45342_1:N:0:ACTTGA Contig542597 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9303:45347_1:Y:0:ACTTGA Contig622737 339 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17350:46604_1:N:0:ACTTGA Contig428949 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13852:49364_1:N:0:ACTTGA Contig10469 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20388:50254_1:N:0:ACTTGA Contig553038 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1422:51862_1:Y:0:AGTTGA Contig29480 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8213:52908_1:N:0:ACTTGA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10239:58199_1:N:0:ACTTGA Contig322052 405 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4056:58724_1:N:0:ACTTGA Contig445967 128 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18932:59769_1:N:0:ACTTGA Contig218491 197 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3348:61952_1:N:0:ACTTGA Contig151288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10076:62112_1:N:0:ACTTGA Contig79991 2343 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14029:62972_1:N:0:ACTTGA Contig145646 2008 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7770:63518_1:Y:0:ACTTGA Contig423008 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7125:63754_1:N:0:ACTTGA Contig396501 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14303:64894_1:N:0:ACTTGA Contig464738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15164:64949_1:N:0:ACTTGA Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18970:65282_1:N:0:ACTTGA Contig654161 361 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11986:68201_1:N:0:ACTTGA Contig400518 431 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18183:68051_1:N:0:ACTTGA Contig322052 403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3000:69069_1:N:0:ACATGA Contig452291 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4693:70152_1:N:0:ACTTGA Contig60759 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14725:71906_1:N:0:ACTTGA Contig330997 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3044:73228_1:N:0:ACTTGA Contig274382 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11997:73092_1:N:0:ACTTGA Contig128657 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7739:74539_1:N:0:ACTTGA Contig28088 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5244:75388_1:N:0:ACTTGA Contig290008 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2558:76278_1:N:0:ACTTGA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10596:77866_1:N:0:ACTTGA Contig499830 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4340:78991_1:N:0:ACTTGA Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14956:80973_1:N:0:ACTTGA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11132:81102_1:N:0:ACTTGA Contig143571 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16215:82239_1:N:0:ACTTGA Contig121704 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19603:82931_1:N:0:ACTTGA Contig300866 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4643:84347_1:N:0:ACTTGA Contig617279 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4729:84752_1:N:0:ACTTGA Contig12186 347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13076:86363_1:N:0:ACTTGA Contig112006 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13132:87502_1:N:0:ACTTGA Contig642394 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2651:87902_1:N:0:ACTTGA Contig290207 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7952:88970_1:N:0:ACTTGA Contig290375 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15755:88894_1:N:0:ACTTGA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:21272:90357_1:N:0:GCTTGA Contig49419 2124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2695:90795_1:Y:0:ACTTGA Contig57612 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5912:92342_1:N:0:ACTTGA Contig63 50109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2297:93460_1:N:0:ACTTGA Contig32976 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19226:94640_1:N:0:ACTTGA Contig22370 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9204:96685_1:N:0:ACTTGA Contig189406 292 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12859:96764_1:N:0:ACTTGA Contig16979 528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14137:97181_1:N:0:ACTTGA Contig466858 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13909:2351_1:N:0:ACTTGA Contig374827 204 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15213:4559_1:N:0:ACTTGA Contig16850 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1356:8313_1:N:0:ACTTGA Contig46519 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3368:9384_1:N:0:ACTTGA Contig21215 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9906:10692_1:N:0:ACTTGA Contig526965 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9045:11359_1:N:0:ACTTGA Contig6429 1658 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5096:11952_1:N:0:ACTTGA Contig7701 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13156:11943_1:N:0:ACTTGA Contig692713 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19153:11878_1:N:0:ACTTGA Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9306:12208_1:N:0:ACTTGA Contig338273 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3394:13870_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20210:14329_1:N:0:ACTTGA Contig234491 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15183:17657_1:N:0:ACTTGA Contig139342 903 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6223:18874_1:N:0:ACTTGA Contig128385 977 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2092:20063_1:N:0:ACTTGA Contig337260 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12362:20073_1:N:0:ACTTGA Contig613828 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2485:20668_1:N:0:ACTTGA Contig187615 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8611:20661_1:N:0:ACTTGA Contig399283 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4002:21771_1:N:0:ACTTGA Contig458795 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14410:22021_1:N:0:ACTTGA Contig116563 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21046:23560_1:N:0:ACTTGA Contig310330 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9958:25218_1:N:0:ACTTGA Contig79441 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13554:25236_1:N:0:ACTTGA Contig630074 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12840:25402_1:N:0:ACTTGA Contig629725 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6205:25843_1:N:0:ACTTGA Contig630074 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14576:25963_1:N:0:ACTTGA Contig115061 4197 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19186:27605_1:N:0:ACTTGA Contig497260 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5113:33010_1:N:0:ACTTGA Contig484840 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9265:34229_1:N:0:ACTTGA Contig216213 8697 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16436:35312_1:N:0:ACTTGA Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13715:37228_1:N:0:ACTTGA Contig9619 280 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20317:37330_1:N:0:ACTTGA Contig268594 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15700:41273_1:N:0:ACTTGA Contig358108 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11369:44887_1:N:0:ACTTGA Contig587118 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5371:48363_1:N:0:ACTTGA Contig242810 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13573:48289_1:N:0:ACTTGA Contig663315 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3171:50374_1:N:0:ACTTGA Contig140582 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5556:50280_1:Y:0:ACTTGA Contig268301 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13006:51131_1:N:0:ACTTGA Contig176831 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16529:52645_1:N:0:ACTTGA Contig97430 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11558:53216_1:N:0:ACTTGA Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9937:53792_1:N:0:ACTTGA Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1203:56877_1:Y:0:TCTTGA Contig596078 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14003:57328_1:N:0:ACTTGA Contig43453 10890 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15418:60447_1:N:0:ACTTGA Contig562505 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14125:60954_1:N:0:ACTTGA Contig171996 754 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12882:61702_1:N:0:ACTTGA Contig585564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7001:62268_1:N:0:ACTTGA Contig322052 403 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12613:65901_1:Y:0:ACTTGA Contig205752 482 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17358:66904_1:N:0:ACTTGA Contig467912 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8010:67235_1:N:0:ACTTGA Contig679343 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5203:67939_1:N:0:ACTTGA Contig21309 53380 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1682:68554_1:N:0:ACTTGA Contig400002 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13162:69296_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6572:69647_1:Y:0:ACTTGA Contig289659 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15625:69804_1:N:0:ACTTGA Contig651776 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7893:70120_1:Y:0:ACTTGA Contig384826 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17035:71478_1:N:0:GCTTGA Contig44931 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2717:71921_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20076:72986_1:N:0:ACTTGA Contig610450 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20952:73617_1:N:0:ACTTGA Contig669504 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14322:75060_1:N:0:ACTTGA Contig549070 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1809:81378_1:Y:0:ACTTGA Contig311746 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5812:82233_1:N:0:ACTTGA Contig645458 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9119:82491_1:Y:0:ACTTGA Contig66014 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12914:82602_1:N:0:ACTTGA Contig52530 14130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16103:82540_1:Y:0:ACTTGA Contig194159 874 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15569:84245_1:N:0:ACTTGA Contig380193 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13647:85311_1:N:0:ACTTGA Contig215392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13048:85971_1:N:0:ACTTGA Contig76998 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19614:86247_1:N:0:ACTTGA Contig243415 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4695:86662_1:N:0:ACTTGA Contig462402 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4982:87725_1:N:0:ACTTGA Contig74152 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20144:87551_1:N:0:ACTTGA Contig577815 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6749:90135_1:N:0:ACTTGA Contig499018 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10827:92142_1:N:0:ACTTGA Contig259567 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14907:92099_1:N:0:ACTTGA Contig201201 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15471:93034_1:N:0:ACTTGA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19701:93956_1:N:0:ACTTGA Contig587005 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3680:98792_1:N:0:ACTTGA Contig55734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15389:2656_1:N:0:ACTTGA Contig96078 1732 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11422:4492_1:N:0:ACTTGA Contig650686 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17639:5552_1:N:0:ACTTGA Contig441455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10593:5876_1:N:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12778:6432_1:N:0:ACTTGA Contig389420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7790:6743_1:N:0:ACTTGA Contig440718 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17232:7522_1:N:0:ACTTGA Contig33217 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10687:8351_1:N:0:ACTTGA Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8726:8800_1:N:0:ACTTGA Contig346227 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12352:9718_1:N:0:ACTTGA Contig35645 988 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8890:12162_1:N:0:ACTTGA Contig408559 140 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15573:12533_1:N:0:ACTTGA Contig475499 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6294:16789_1:N:0:ACTTGA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1552:17372_1:N:0:ACTTGA Contig9251 1750 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8998:18013_1:Y:0:ACTTGA Contig33204 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13108:18566_1:N:0:ACTTGA Contig2496 16444 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9464:21148_1:N:0:ACTTGA Contig19272 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12393:22043_1:N:0:ACTTGA Contig443318 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18966:27633_1:Y:0:ACTTGA Contig19256 76331 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15637:31582_1:N:0:ACTTGA Contig57944 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14213:33332_1:N:0:ACTTGA Contig22579 10273 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20472:34345_1:N:0:ACTTGA Contig102028 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6613:34648_1:Y:0:ACTTGA Contig25966 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17507:34573_1:N:0:ACTTGA Contig306813 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16075:35069_1:N:0:ACTTGA Contig331110 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10638:35448_1:N:0:ACTTGA Contig72783 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11011:35956_1:Y:0:ACTTGA Contig214215 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6269:39983_1:N:0:ACTTGA Contig606623 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16333:42099_1:N:0:ACTTGA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13694:43086_1:N:0:ACTTGA Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6358:44051_1:N:0:ACTTGA Contig176904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1602:45965_1:N:0:ACTTGA Contig15193 203 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8297:47010_1:N:0:ACTTGA Contig188364 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4564:47273_1:N:0:ACTTGA Contig114129 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14364:49579_1:N:0:ACTTGA Contig81775 1030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18546:50571_1:N:0:ACTTGA Contig240824 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8199:51948_1:N:0:ACTTGA Contig515495 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10793:52742_1:N:0:ACTTGA Contig50279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15203:52614_1:N:0:ACTTGA Contig208541 2825 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18497:53850_1:N:0:ACTTGA Contig35645 988 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20102:54612_1:N:0:ACTTGA Contig428931 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1434:55583_1:N:0:ACTTGA Contig428949 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3883:60918_1:N:0:ACTTGA Contig364009 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15485:61059_1:N:0:ACTTGA Contig361754 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6436:62092_1:N:0:ACTTGA Contig610450 101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21186:64214_1:N:0:ACTTGA Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4271:65749_1:N:0:ACTTGA Contig16765 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19477:66077_1:N:0:ACTTGA Contig16478 16161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12248:68499_1:N:0:ACTTGA Contig46387 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19546:72200_1:N:0:ACTTGA Contig521443 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16723:73242_1:N:0:ACTTGA Contig562505 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4638:73544_1:N:0:ACTTGA Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11220:77484_1:N:0:ACTTGA Contig550121 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6347:78044_1:N:0:ACTTGA Contig357783 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10042:81410_1:N:0:ACTTGA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2151:81721_1:N:0:ACTTGA Contig360958 110 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16103:81545_1:N:0:ACTTGA Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2219:81866_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2552:81938_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13460:84317_1:Y:0:ACTTGA Contig540931 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11520:85255_1:N:0:ACTTGA Contig258684 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9962:87057_1:N:0:ACTTGA Contig381756 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16129:88490_1:N:0:ACTTGA Contig204001 1122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20906:89347_1:N:0:ACTTGA Contig683893 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12817:90382_1:N:0:ACTTGA Contig378309 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9513:90904_1:N:0:ACTTGA Contig549601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17283:91211_1:N:0:ACTTGA Contig243633 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18174:91371_1:N:0:ACTTGA Contig529813 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18713:91748_1:N:0:ACTTGA Contig113836 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13304:92230_1:N:0:ACTTGA Contig316511 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19739:92566_1:N:0:ACTTGA Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19352:97491_1:N:0:ACTTGA Contig302959 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5856:98228_1:N:0:ACTTGA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17391:98262_1:N:0:ACTTGA Contig201331 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12971:3198_1:N:0:ACTTGA Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15361:4721_1:N:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12138:7214_1:Y:0:ACTTCA Contig105354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2705:7987_1:N:0:ACTTGA Contig140997 1339 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17855:7753_1:Y:0:AGTTGA Contig4083 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15106:8858_1:N:0:ACTTGA Contig81137 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5849:9106_1:N:0:ACTTGA Contig637239 436 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7240:9426_1:N:0:ACTTGA Contig438996 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18797:9279_1:N:0:ACTTGA Contig13730 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16635:9819_1:N:0:ACTTGA Contig422216 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20957:10077_1:N:0:ACTTGA Contig608303 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7433:11136_1:N:0:ACTTGA Contig625821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5543:12838_1:N:0:ACTTGA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18300:12949_1:N:0:ACTTGA Contig33174 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18120:14565_1:N:0:ACTTGA Contig328221 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9920:15992_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18216:17297_1:N:0:ACTTGA Contig343177 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20750:20108_1:Y:0:ACTTGA Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16424:20441_1:N:0:ACTTGA Contig288074 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9421:21729_1:N:0:ACTTGA Contig667506 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6802:22156_1:N:0:ACTTGA Contig421599 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7217:24894_1:N:0:ACTTGA Contig512524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17391:25733_1:N:0:ACTTGA Contig271201 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14465:28190_1:N:0:ACTTGA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5914:30060_1:N:0:ACTTGA Contig350168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4350:30537_1:N:0:ACTTGA Contig606253 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2130:33745_1:N:0:ACTTGA Contig602550 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15571:33985_1:N:0:ACTTGA Contig306106 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6632:34449_1:N:0:ACTTGA Contig628188 115 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5726:34844_1:N:0:ACTTGA Contig129608 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12572:37575_1:Y:0:ACTTGA Contig37313 160 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16236:39143_1:N:0:ACTTGA Contig592636 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3528:40214_1:Y:0:GCTTGA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:17066:40163_1:N:0:ACTTGA Contig105564 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6403:41610_1:N:0:ACTTGA Contig435654 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2024:42892_1:N:0:ACTTGA Contig126695 3025 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:8616:43270_1:N:0:ACTTGA Contig35645 987 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6353:44829_1:N:0:ACTTGA Contig574357 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7474:46866_1:N:0:ACTTGA Contig671821 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19752:46954_1:N:0:ACTTGA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2139:48783_1:N:0:ACTTGA Contig76609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6773:50106_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15416:50464_1:N:0:ACTTGA Contig110601 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14140:50617_1:Y:0:ACTTGC Contig48449 5296 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:2437:50906_1:Y:0:ACTTGA Contig406963 137 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7007:52106_1:N:0:ACTTGA Contig495762 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14112:53347_1:N:0:ACTTGA Contig494450 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6047:57646_1:N:0:ACTTGA Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14263:62878_1:N:0:ACTTGA Contig504545 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:5586:65988_1:N:0:ACTTGA Contig202374 725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7276:66105_1:N:0:ACTTGA Contig41258 6705 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11774:66059_1:N:0:ACTTGA Contig543421 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12306:68393_1:N:0:ACTTGA Contig8526 1378 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20375:68305_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3007:69456_1:N:0:ACTTGA Contig384481 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:3836:69555_1:N:0:ACTTGA Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19009:70662_1:N:0:ACTTGA Contig360049 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11726:70831_1:N:0:ACTTGA Contig359576 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20229:70966_1:N:0:ACTTGA Contig373633 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12019:72741_1:N:0:ACTTGA Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:12293:72621_1:N:0:ACTTGA Contig280027 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4626:73222_1:N:0:GCTTGA Contig20169 7969 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15102:73940_1:N:0:ACTTGA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7445:74293_1:N:0:ACTTGA Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:18917:74877_1:N:0:ACTTGA Contig442886 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20058:74982_1:N:0:ACTTGA Contig684993 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:1778:77189_1:N:0:ACTTGA Contig570190 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:16281:77764_1:N:0:ACTTGA Contig378309 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:4947:78866_1:N:0:ACTTGA Contig405050 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:9701:80245_1:N:0:ACTTGA Contig527515 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20153:84701_1:N:0:ACTTGA Contig626894 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6798:85593_1:N:0:ACTTGA Contig25964 8821 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20318:85952_1:N:0:ACTTGA Contig158155 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15471:89230_1:N:0:ACTTGA Contig402017 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:7166:90194_1:N:0:ACTTGA Contig353276 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:13629:92374_1:N:0:ACTTGA Contig212938 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:19629:92274_1:N:0:ACTTGA Contig220441 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:20637:92483_1:N:0:ACTTGA Contig186816 493 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:10300:93197_1:N:0:ACTTGA Contig71923 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:14630:95313_1:N:0:ACTTGA Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15195:97555_1:N:0:ACTTGA Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:11495:98407_1:N:0:ACTTGA Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:6467:99320_1:N:0:ACTTGA Contig474502 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1105:15061:99799_1:N:0:ACTTGA Contig574942 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2301:2272_1:N:0:ACTTGA Contig549002 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17310:4244_1:N:0:ACTTGA Contig253396 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11166:4670_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10165:6430_1:N:0:ACTTGA Contig194922 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10486:11978_1:N:0:ACTTGA Contig627157 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15550:12358_1:N:0:ACTTGA Contig549027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10270:12810_1:N:0:ACTTGA Contig320318 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20599:13332_1:N:0:ACTTGA Contig595980 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12429:13531_1:N:0:ACTTGA Contig311753 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11139:14157_1:N:0:ACTTGA Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15851:18028_1:N:0:ACTTGA Contig171017 432 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8598:19228_1:N:0:ACTTGA Contig501995 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12317:19713_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16588:21223_1:N:0:ACTTGA Contig141118 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8492:22331_1:N:0:ACTTGA Contig132714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20813:22418_1:N:0:ACTTGA Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17287:22999_1:N:0:ACTTTA Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11417:25319_1:Y:0:ACTTGA Contig239984 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19522:26395_1:N:0:ACTTGA Contig212284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2689:27366_1:N:0:ACTTGA Contig215641 469 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18333:30349_1:N:0:ACTTGA Contig654828 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11687:30792_1:N:0:ACTTGA Contig33770 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16872:32150_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5369:32438_1:Y:0:ACTTGA Contig396501 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:21133:33269_1:N:0:ACTTGA Contig625788 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3333:33569_1:N:0:ACTTGA Contig474092 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4521:37377_1:N:0:ACTTGA Contig123259 1531 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18012:37550_1:N:0:ACTTGA Contig145418 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6618:37753_1:N:0:ACTTGA Contig450147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15021:38722_1:N:0:ACTTGA Contig359762 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14231:42478_1:N:0:ACTTGA Contig674104 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10595:43851_1:N:0:ACTTGA Contig325648 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1581:46109_1:N:0:ACTTGA Contig400002 226 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5687:47550_1:N:0:ACTTGA Contig189406 293 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19826:47745_1:N:0:ACTTGA Contig689397 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19051:48976_1:N:0:ACTTGA Contig561316 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16900:49949_1:N:0:ACTTGA Contig205516 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3855:50011_1:N:0:ACTTGA Contig568651 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15747:52960_1:N:0:ACTTGA Contig222109 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15841:54502_1:N:0:ACTTGA Contig171786 662 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6407:55174_1:N:0:ACTTGA Contig562041 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16629:55175_1:N:0:ACTTGA Contig615097 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11487:56091_1:N:0:ACTTGA Contig78169 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6159:56981_1:N:0:ACTTGA Contig541121 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9350:57256_1:N:0:ACTTGA Contig13730 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19109:58117_1:Y:0:ACTTGA Contig592636 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5257:58274_1:N:0:ACTTGA Contig403379 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11727:61192_1:N:0:ACTTGA Contig445955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19430:63393_1:N:0:ACTTGA Contig85159 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6617:63710_1:N:0:ACTTGA Contig28913 2783 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18758:65426_1:N:0:ACTTGA Contig45854 5010 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:19036:67006_1:N:0:ACTTGA Contig31403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8131:67285_1:N:0:ACTTGA Contig279822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18700:68491_1:N:0:ACTTGA Contig235004 652 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:20910:69548_1:Y:0:ACTTGA Contig184129 693 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:4751:69884_1:N:0:ACTTGA Contig160479 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12546:70539_1:N:0:ACTTGA Contig63990 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15470:70983_1:N:0:ACTTGA Contig249946 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:15904:70823_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1729:72729_1:N:0:ACTTGA Contig226265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:10420:75407_1:N:0:ACTTGA Contig150850 743 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:16484:76250_1:N:0:ACTTGA Contig9168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:6791:76762_1:N:0:ACTTGA Contig279211 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17556:77543_1:N:0:ACTTGA Contig98325 1133 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18946:79181_1:N:0:ACTTGA Contig277106 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:3873:79289_1:N:0:ACTTGA Contig236744 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:12668:80470_1:N:0:ACTTGA Contig289721 166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:1290:80528_1:Y:0:ACTTGA Contig627807 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11628:81312_1:N:0:GCTTGA Contig112557 871 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5442:83595_1:N:0:ACTTGA Contig373734 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5231:85982_1:N:0:ACTTGA Contig530318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:2435:86062_1:N:0:ACTTGA Contig691897 213 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:11353:89568_1:Y:0:ACTTGA Contig80812 5907 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:5761:90546_1:N:0:ACTTGA Contig81493 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9056:91122_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:18894:92024_1:N:0:ACTTGA Contig331980 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:14443:94657_1:N:0:ACTTGA Contig39581 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:17184:94970_1:N:0:ACTTGA Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:8519:96462_1:Y:0:ACTTGA Contig336786 147 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:13214:97845_1:N:0:ACTTGA Contig108243 14275 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1106:9651:99701_1:N:0:ACTTGA Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7548:2629_1:N:0:ACTTGA Contig2150 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3776:2848_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8287:2879_1:N:0:GCTTGA Contig170663 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10097:5107_1:N:0:ACTTGA Contig650506 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17474:5499_1:N:0:ACTTGA Contig70429 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11002:6870_1:Y:0:TCTTGA Contig454189 135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9609:7473_1:Y:0:ACTTGA Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4679:9862_1:N:0:ACTTGA Contig284744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9785:9799_1:N:0:ACTTGA Contig244678 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7936:10393_1:N:0:ACTTGA Contig76904 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9826:12387_1:Y:0:ACTTGA Contig695027 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1681:12525_1:N:0:ACTTGA Contig589541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5131:20308_1:N:0:ACTTGA Contig327309 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12931:21249_1:Y:0:ACTTGA Contig9393 3227 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19469:24628_1:N:0:ACTTGA Contig56599 18017 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10781:25422_1:N:0:ACTTGA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1516:25746_1:N:0:ACTTGA Contig68576 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8788:28089_1:N:0:ACTTGA Contig564182 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18012:28578_1:N:0:ACTTGA Contig460314 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6909:31795_1:N:0:ACTTGA Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17174:33075_1:N:0:ACTTGA Contig643491 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9126:34678_1:N:0:ACTTGA Contig2131 20208 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10309:36311_1:N:0:ACTTGA Contig906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16856:36821_1:Y:0:ACTTGA Contig615949 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2476:37444_1:N:0:ACTTGA Contig4083 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14687:39036_1:N:0:ACTTGA Contig591360 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3769:39290_1:N:0:ACTTGA Contig347393 17161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15285:40031_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4399:40272_1:N:0:ACTTGA Contig558755 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1589:41816_1:N:0:ACTTGA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20055:42737_1:N:0:ACTTAA Contig649807 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11466:43736_1:N:0:ACTTGA Contig166845 885 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14343:44512_1:N:0:ACTTGA Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20783:44763_1:N:0:ACTTGA Contig544105 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:21056:45515_1:N:0:ACTTGA Contig434401 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8036:46263_1:N:0:ACTTGA Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7083:47314_1:N:0:ACTTGA Contig47398 12878 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:21250:47382_1:N:0:ACTTGA Contig393226 337 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3775:48006_1:N:0:ACTTGA Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3177:50686_1:N:0:ACTTGA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15273:51492_1:N:0:ACTTGA Contig635415 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16410:51403_1:N:0:ACTTGA Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10452:52098_1:N:0:ACTTGA Contig492319 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5372:52428_1:N:0:ACTTGA Contig12079 448 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1484:53326_1:N:0:ACTTGA Contig149292 838 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5479:54059_1:N:0:ACTTGA Contig118157 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16885:54592_1:N:0:ACTTGA Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8204:54888_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17200:55973_1:N:0:ACTTGA Contig235004 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9196:57392_1:N:0:ACTTGA Contig6810 9848 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:1830:59155_1:N:0:ACTTGA Contig181265 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18077:59238_1:N:0:ACTTGA Contig381756 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19162:61117_1:N:0:ACTTGA Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3694:62275_1:N:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8209:62664_1:N:0:ACTTGA Contig553542 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:15533:63493_1:N:0:ACTTGA Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16407:63508_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:12675:66343_1:N:0:ACTTGA Contig73089 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:9692:66789_1:N:0:ACTTGA Contig177563 440 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19167:67426_1:N:0:ACTTGA Contig40418 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2840:71012_1:N:0:ACTTGA Contig639220 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5157:72361_1:Y:0:ACTTGA Contig76322 6599 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:5513:72390_1:N:0:ACTTGA Contig233938 81 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6475:73018_1:N:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:6138:74046_1:N:0:ACTTGA Contig83441 9179 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:4216:76087_1:N:0:ACTTGA Contig522239 569 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:19461:77263_1:N:0:ACTTGA Contig17113 134 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20716:78414_1:Y:0:ACTTGA Contig619474 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:3315:81329_1:N:0:ACTTGA Contig368787 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18367:81265_1:N:0:ACTTGA Contig532452 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:10977:82172_1:Y:0:ACTTGA Contig325954 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:11440:82096_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8120:82741_1:Y:0:ACTTGA Contig182293 365 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2789:84230_1:N:0:ACTTGA Contig80366 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14744:85324_1:N:0:ACTTGA Contig100749 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:8402:86397_1:N:0:ACTTGA Contig696097 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16371:86593_1:N:0:ACTTGA Contig362829 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:16060:87386_1:N:0:ACTTGA Contig160190 653 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2419:87792_1:N:0:ACTTGA Contig64125 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:20702:89503_1:N:0:ACTTGA Contig15444 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:2416:91300_1:N:0:ACTTGA Contig17043 125 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:14007:92501_1:N:0:ACTTGA Contig312982 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:17014:93161_1:N:0:ACTTGA Contig418921 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:18646:95847_1:N:0:ACTTGA Contig88381 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1107:7804:99344_1:N:0:ACTTGA Contig7341 1705 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:15789:3329_1:N:0:ACTTGA Contig175337 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:7115:3521_1:N:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:4159:5197_1:N:0:ACTTGA Contig280405 308 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:20375:6234_1:N:0:ACTTGA Contig499830 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:4111:6943_1:N:0:ACTTGA Contig39719 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:17190:7430_1:N:0:ACTTGA Contig25216 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:18538:7603_1:N:0:ACTTGA Contig139084 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:18023:9796_1:N:0:ACTTGA Contig375324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:10687:14190_1:N:0:ACTTGA Contig686797 139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:2064:18050_1:N:0:ACTTGA Contig235004 649 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:7376:18852_1:N:0:ACTTGA Contig593455 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:7529:19047_1:N:0:ACTTGA Contig199330 382 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:10470:19184_1:N:0:ACTTGA Contig137526 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:14476:19622_1:N:0:ACTTGA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:15802:22176_1:N:0:ACTTGA Contig2108 16776 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:4366:26201_1:N:0:ACTTGA Contig111200 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:4874:27019_1:N:0:ACTTGA Contig104139 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:7570:27496_1:N:0:ACTTGA Contig630647 404 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:17728:28457_1:N:0:ACTTGA Contig377738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:7872:29227_1:N:0:ACTTGA Contig59744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:3456:29350_1:N:0:ACTTGA Contig388873 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:5819:29699_1:N:0:ACTTGA Contig242785 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:11144:29562_1:N:0:ACTTGA Contig617394 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:15398:29773_1:N:0:ACTTGA Contig19030 1045 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:20977:31208_1:N:0:ACTTGA Contig138423 7685 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:21138:31766_1:N:0:ACTTGA Contig85247 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:18260:32168_1:N:0:ACTTGA Contig131435 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:7726:32272_1:N:0:ACTTGA Contig92500 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:9028:34305_1:N:0:ACTTGA Contig402183 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:1184:36343_1:Y:0:ACTTGA Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:8286:37318_1:N:0:ACTTGA Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:6873:37589_1:N:0:ACTTGA Contig216582 933 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:16159:37977_1:Y:0:ACTTTA Contig120152 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:16164:37989_1:N:0:ACTTGA Contig120152 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:4596:38842_1:Y:0:ACTTGA Contig61927 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:8468:39827_1:N:0:ACTTGA Contig142347 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:14852:40135_1:N:0:ACTTGA Contig589226 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:4203:42438_1:N:0:ACTTGA Contig12288 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:21151:43268_1:Y:0:ACTTGA Contig242743 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:21120:43938_1:N:0:ACTTGA Contig556796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:1358:44247_1:Y:0:ACTTGA Contig69001 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1108:9254:47264_1:N:0:ACTTGA Contig235004 649 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 683493 (68.35%) aligned 0 times 122819 (12.28%) aligned exactly 1 time 193688 (19.37%) aligned >1 times 31.65% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 684400 (68.44%) aligned 0 times 122996 (12.30%) aligned exactly 1 time 192604 (19.26%) aligned >1 times 31.56% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 626069 (62.61%) aligned 0 times 134030 (13.40%) aligned exactly 1 time 239901 (23.99%) aligned >1 times 37.39% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 625456 (62.55%) aligned 0 times 133969 (13.40%) aligned exactly 1 time 240575 (24.06%) aligned >1 times 37.45% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_8_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_8_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 330061 Mapping efficiency: 33.0% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2020530 Total methylated C's in CpG context: 292066 Total methylated C's in CHG context: 8625 Total methylated C's in CHH context: 98529 Total methylated C's in Unknown context: 57 Total unmethylated C's in CpG context: 42979 Total unmethylated C's in CHG context: 409700 Total unmethylated C's in CHH context: 1168631 Total unmethylated C's in Unknown context: 344 C methylated in CpG context: 87.2% C methylated in CHG context: 2.1% C methylated in CHH context: 7.8% C methylated in Unknown context (CN or CHN): 14.2% Bismark completed in 0d 8h 20m 44s ==================== Bismark run complete ==================== Single-core mode: setting pid to 1 Single-end alignments will be performed ======================================= Input file is in FastQ format gzip: stdout: Broken pipe Processing reads up to sequence no. 1000000 from /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_9_s456_trimmed.fq.gz Writing a C -> T converted version of the input file zr1394_9_s456_trimmed.fq.gz to zr1394_9_s456_trimmed.fq.gz_C_to_T.fastq Writing a G -> A converted version of the input file zr1394_9_s456_trimmed.fq.gz to zr1394_9_s456_trimmed.fq.gz_G_to_A.fastq Created C -> T as well as G -> A converted versions of the FastQ file zr1394_9_s456_trimmed.fq.gz (1000001 sequences in total) Input files are zr1394_9_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_9_s456_trimmed.fq.gz_G_to_A.fastq (FastQ) Now running 4 individual instances of Bowtie 2 against the bisulfite genome of /home/sam/data/oly_methylseq/oly_genome/ with the specified options: -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals Now starting the Bowtie 2 aligner for CTreadCTgenome (reading in sequences from zr1394_9_s456_trimmed.fq.gz_C_to_T.fastq with options -q --score-min L,0,-0.2 -p 16 --reorder --ignore-quals --norc) Using Bowtie 2 index: /home/sam/data/oly_methylseq/oly_genome/Bisulfite_Genome/CT_conversion/BS_CT Found first alignment: HWI-C00124:164:C7URDANXX:1:1101:1382:2160_1:N:0:GATCAG 4 * 0 0 * * 0 0 TATTTAAAAAATTTTTATTATTTTAATATTA B>> Writing bisulfite mapping results to zr1394_9_s456_trimmed_bismark_bt2.bam <<< gzip: stdout: Broken pipe Reading in the sequence file /home/sam/analyses/20180503_oly_methylseq_trimgalore/zr1394_9_s456_trimmed.fq.gz Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6430:2678_1:N:0:GATCAG Contig520276 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7870:2573_1:N:0:GATCAG Contig525376 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18092:2929_1:N:0:GATCAG Contig302859 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3945:3416_1:N:0:GATCAG Contig253232 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19280:3845_1:N:0:GATCAG Contig285931 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3804:4363_1:N:0:GATCAG Contig508260 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14234:4641_1:N:0:AATCAG Contig253397 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12283:4902_1:N:0:GATCAG Contig452291 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21075:4933_1:N:0:GATCAG Contig482062 197 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12642:5955_1:N:0:GATCAG Contig6019 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18821:5946_1:Y:0:GATCTG Contig651649 129 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10632:6146_1:N:0:GATCAG Contig81493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17080:6147_1:N:0:GATCAG Contig78479 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17790:6594_1:N:0:GATCAG Contig57612 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5056:6901_1:N:0:GATCAG Contig512524 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18005:7326_1:N:0:GATCAG Contig498807 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4835:7526_1:Y:0:GATCAG Contig322973 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16382:8459_1:N:0:GATCAG Contig245179 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3502:9780_1:N:0:GATCAG Contig142038 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15487:10098_1:N:0:GATCAG Contig131891 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2920:10435_1:N:0:GATCAG Contig396501 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10497:11846_1:N:0:GATCAG Contig593698 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18210:11993_1:Y:0:GATCAG Contig19201 17235 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5659:12821_1:N:0:GATCAG Contig3643 21023 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5055:13208_1:N:0:GTTCAG Contig652569 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8236:14068_1:Y:0:GATCAG Contig188297 842 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14682:14026_1:N:0:GATCAG Contig496057 97 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13072:15269_1:N:0:GATCAG Contig378082 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18008:16399_1:Y:0:GATCAG Contig410754 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1274:16717_1:N:0:GATCAG Contig119377 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9123:17849_1:N:0:GATCAG Contig149968 1306 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17847:18162_1:Y:0:GATCAG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12443:19187_1:N:0:GATCAG Contig455324 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5283:20717_1:N:0:GATCAG Contig408691 121 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16079:20506_1:N:0:GATCAG Contig27055 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18707:21497_1:N:0:GATCAG Contig118525 736 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20071:21538_1:N:0:GATCAG Contig5768 3624 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2422:22512_1:N:0:GATCAG Contig548751 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17284:23233_1:N:0:GATCAG Contig610582 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4486:23721_1:N:0:GATCAG Contig452914 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16061:24667_1:N:0:GATCAG Contig5709 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20623:24536_1:N:0:GATCAG Contig248757 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5071:24864_1:N:0:GATCAG Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16810:25261_1:N:0:GATCAG Contig16858 165 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13860:25962_1:N:0:GATCAG Contig212926 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20584:26316_1:N:0:AATCAG Contig90138 12435 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4689:26700_1:N:0:GATCAG Contig692667 442 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5726:26606_1:N:0:GATCAG Contig543421 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16843:27352_1:N:0:GATCAG Contig317734 103 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9667:28569_1:N:0:GATCAG Contig1096 33918 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5445:28842_1:N:0:GATCAG Contig645560 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1294:29131_1:N:0:GATCAG Contig19021 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12069:30463_1:N:0:GATCAG Contig158725 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20687:30459_1:N:0:GATCAG Contig93525 1223 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5975:30525_1:N:0:GATCAG Contig500144 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18996:31172_1:N:0:GATCAG Contig331826 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7017:33484_1:N:0:GATCAA Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18556:33456_1:N:0:GATCAG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2323:33650_1:N:0:GATCAG Contig670655 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13872:33918_1:N:0:GATCAG Contig22640 4672 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11429:34627_1:N:0:GATCAG Contig119436 804 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3320:35253_1:N:0:GATCAG Contig570863 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16952:36223_1:N:0:GATCAG Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8793:38974_1:N:0:GATCAG Contig221868 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10680:38764_1:N:0:GATCAG Contig34874 6753 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12057:38916_1:N:0:GATCAG Contig29385 31101 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17664:39073_1:N:0:AATCAG Contig330510 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1230:39438_1:N:0:GATCAG Contig77168 21171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12037:39386_1:N:0:AATCAG Contig617493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5708:39861_1:N:0:GATCAG Contig115061 4196 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11857:39818_1:N:0:GATCAG Contig628880 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12227:40556_1:N:0:AATCAG Contig324257 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9218:41984_1:N:0:GATCAG Contig240999 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15232:42199_1:N:0:GATCAG Contig569574 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15784:42989_1:N:0:AATCAG Contig350168 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16624:44207_1:N:0:GATCAG Contig326583 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5337:44833_1:N:0:GATCAG Contig551467 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13717:45688_1:N:0:GATCAG Contig399722 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14604:47553_1:N:0:GATCAG Contig86822 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10377:48296_1:N:0:GATCAG Contig335108 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16882:48302_1:N:0:GATCAG Contig351560 113 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13350:48689_1:N:0:GATCAG Contig135213 2081 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2350:49201_1:N:0:GATCAG Contig439173 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20257:49384_1:N:0:GATCAG Contig382620 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11803:49936_1:N:0:GATCAG Contig541354 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5086:50105_1:N:0:GATCAG Contig396049 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14499:50813_1:N:0:GATCAG Contig560144 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5089:51384_1:N:0:GATCAG Contig498410 206 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5926:54039_1:N:0:GATCAG Contig376602 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13376:54134_1:N:0:GATCAG Contig503545 910 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18998:54466_1:N:0:GATCAG Contig568956 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8001:55459_1:Y:0:GATCAG Contig422035 158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5905:56307_1:N:0:GATCAG Contig112570 789 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10629:56955_1:N:0:GATCAG Contig175337 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7762:57276_1:N:0:GATCAG Contig315609 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5552:57961_1:N:0:GATCAG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18120:57819_1:N:0:GATCAG Contig437990 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14568:58990_1:N:0:GATCAG Contig10909 943 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13700:59394_1:N:0:GATCAG Contig282460 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3389:60466_1:N:0:GATCAG Contig364325 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4151:60461_1:N:0:GATCAG Contig612912 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9325:60738_1:N:0:AATCAG Contig264801 335 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16458:60553_1:N:0:GATCAG Contig301173 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7149:61070_1:N:0:GATCAG Contig131177 814 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17580:61088_1:N:0:GATCAG Contig619474 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11315:61440_1:N:0:GATCAG Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3841:62011_1:N:0:GATCAG Contig55882 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14912:62676_1:N:0:GATCAG Contig527779 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20309:63357_1:N:0:GATCAG Contig647037 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4798:63634_1:N:0:GATCAG Contig182269 1257 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3040:64461_1:N:0:GATCAG Contig622127 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2039:64585_1:N:0:GATCAG Contig329619 124 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15417:64515_1:N:0:GATCAG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8012:65986_1:Y:0:GATCAG Contig80745 3299 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8473:65906_1:N:0:AATCAG Contig178274 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14032:65871_1:N:0:GATCAG Contig156268 729 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3446:66056_1:N:0:GATCAG Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7716:66486_1:N:0:GATCAG Contig61291 1225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:21225:67977_1:N:0:GATCAG Contig161297 671 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4333:68269_1:Y:0:GATCAG Contig512271 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16929:68612_1:N:0:GATTAG Contig266977 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10767:71229_1:N:0:GATCAG Contig49687 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14565:71001_1:N:0:GATCAG Contig53573 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:18214:71001_1:N:0:GATCAG Contig136469 3558 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19341:71611_1:N:0:GATCAG Contig105708 12952 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16069:72249_1:N:0:GATCAG Contig44128 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5134:72428_1:N:0:GATCAG Contig243829 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9683:72953_1:Y:0:GATCAG Contig552246 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19044:72936_1:N:0:GATCAG Contig297555 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:7604:73118_1:N:0:GATCAG Contig60365 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5969:73632_1:N:0:GATCAG Contig254827 161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15946:74594_1:N:0:GATCAG Contig680332 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1585:74826_1:N:0:AATCAG Contig167686 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6803:74800_1:N:0:GATCAG Contig268048 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10297:75033_1:N:0:GATCAG Contig359762 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9354:75653_1:N:0:GATCAG Contig36630 41535 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12525:75504_1:N:0:GATCAG Contig612958 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2545:75865_1:N:0:GATCAG Contig647160 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11737:75798_1:N:0:AATCAG Contig556480 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15256:75953_1:N:0:GATCAG Contig205254 939 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:20926:76590_1:Y:0:GATCAG Contig215266 3135 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:9826:78078_1:N:0:GATCAG Contig603187 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14248:78660_1:N:0:GATCAG Contig91617 1797 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15735:79161_1:N:0:GATCAG Contig677541 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16864:81501_1:N:0:GATCAG Contig405941 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:11544:81848_1:N:0:GATCAG Contig339169 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19955:81805_1:N:0:GATCAG Contig160479 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15121:82101_1:N:0:AATCAG Contig445420 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:19501:83439_1:N:0:GATCAG Contig674268 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3776:85068_1:N:0:GATCAG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12693:85791_1:N:0:GATCAG Contig177267 395 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:15461:86211_1:N:0:GATCAG Contig34929 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16968:86307_1:N:0:GATCAG Contig62815 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3449:86515_1:N:0:GATCAG Contig321107 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6683:86927_1:N:0:GATCAG Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17127:86758_1:N:0:GATCAG Contig90605 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:13055:88532_1:N:0:GATCAG Contig520955 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2767:89008_1:N:0:GATCAG Contig201107 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10762:89839_1:N:0:GATCAG Contig388747 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8073:90674_1:N:0:GATCAG Contig655304 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8866:90919_1:N:0:GATCAG Contig325954 89 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6750:91763_1:N:0:GATCAG Contig79291 1945 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:4058:92147_1:N:0:GATCAG Contig303814 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14466:92014_1:N:0:GATCAG Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:2128:92575_1:N:0:GATCAG Contig78803 3417 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:6716:92777_1:N:0:GATCAG Contig288326 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3824:94356_1:N:0:GATCAG Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16645:94722_1:N:0:GATCAG Contig127394 5047 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5412:95271_1:N:0:GATCAG Contig31981 5981 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:14043:95271_1:N:0:GATCAG Contig590763 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:16486:96038_1:N:0:GATCAG Contig133145 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:1353:96561_1:N:0:GATCAG Contig221585 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3127:97552_1:N:0:GATCAG Contig12186 347 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:5260:97605_1:N:0:GATCAG Contig390783 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8464:98139_1:N:0:GATCAG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:10379:98223_1:N:0:GATCAG Contig577801 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:17331:98202_1:N:0:GATCAG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:12434:98636_1:N:0:GATCAG Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:3089:98940_1:Y:0:GATCAG Contig312699 84 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1101:8070:99966_1:Y:0:GATCAT Contig481055 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7009:2315_1:N:0:GATCAG Contig64114 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9488:2427_1:N:0:GATCAG Contig18594 19941 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13611:2258_1:N:0:GATCAG Contig461423 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13936:5673_1:N:0:GATCAG Contig266377 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9114:7930_1:N:0:GATCAG Contig81493 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2909:8131_1:N:0:GATCAG Contig442010 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15964:8330_1:N:0:GATCAG Contig396407 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19159:8718_1:N:0:GATCAG Contig103678 2400 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3872:9562_1:N:0:GATCAG Contig347027 90 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5611:10266_1:N:0:GATCAG Contig322890 225 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10012:10429_1:N:0:GATCAG Contig602782 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18233:10896_1:N:0:GATCAG Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1876:11945_1:N:0:GATCAG Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12324:11883_1:N:0:AATCAG Contig48953 4789 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13885:11912_1:N:0:GATCAG Contig624915 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11164:12812_1:N:0:GATCAG Contig58165 2664 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15011:13308_1:N:0:GATCAG Contig53330 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17537:13945_1:N:0:GATCAG Contig989 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6180:14403_1:N:0:GATCAG Contig69589 3183 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6293:14679_1:N:0:GATCAG Contig115079 8739 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20013:14630_1:N:0:GATCAG Contig58064 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16256:14862_1:N:0:GATCAG Contig567496 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18921:14837_1:Y:0:GATCAG Contig451422 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3863:16530_1:N:0:GATCAG Contig617572 7085 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9966:16893_1:N:0:GATCAG Contig137666 1392 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5063:17136_1:N:0:GATCAG Contig473206 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13717:17427_1:N:0:GATCAG Contig458794 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15666:17355_1:N:0:AATCAG Contig162395 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10829:18041_1:N:0:GATCAG Contig562041 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8511:18352_1:N:0:GATCAG Contig481976 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15491:18625_1:N:0:GATCAG Contig483886 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16652:18600_1:N:0:AATCAG Contig119989 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3413:20429_1:N:0:GATCAG Contig36728 3139 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20985:20369_1:N:0:GATCAG Contig373202 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17597:20864_1:N:0:GATCAG Contig130628 1632 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18453:20855_1:N:0:GATCAG Contig544831 249 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15172:21091_1:N:0:GATCAG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3395:21698_1:N:0:GATCAG Contig671821 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19691:22853_1:N:0:GATCAG Contig130581 1711 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20038:23243_1:N:0:GATCAG Contig22546 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3340:23702_1:N:0:GATCAG Contig63056 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1907:23978_1:N:0:GATCAG Contig398160 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2056:23772_1:N:0:GATCAG Contig165917 488 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4264:23866_1:N:0:GATCAG Contig127394 5048 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17232:23792_1:N:0:GATCAG Contig200624 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3808:24575_1:N:0:GATCAG Contig609392 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8287:24910_1:N:0:GATCAG Contig228865 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3179:25181_1:Y:0:GATCAG Contig47975 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5694:26083_1:N:0:GATCAG Contig4032 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19907:26862_1:N:0:GATCAG Contig28913 2785 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13499:27969_1:N:0:GATCAG Contig184078 907 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18726:28276_1:N:0:GATCAG Contig21801 33173 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6073:28595_1:N:0:GATCAG Contig525149 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2443:29007_1:N:0:GATCAG Contig366202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14554:29216_1:N:0:GATCAG Contig15370 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14602:29323_1:N:0:GATCAG Contig521811 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8017:29512_1:N:0:GATCAG Contig675868 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10268:30158_1:N:0:GATCAG Contig657402 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18053:30039_1:N:0:GATCAG Contig531891 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18266:30666_1:N:0:GATCAG Contig29129 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5636:31201_1:N:0:GATCAG Contig362739 252 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15388:31546_1:N:0:GATCAG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19835:31578_1:N:0:GATCAG Contig142698 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6628:31890_1:Y:0:GATCAG Contig365277 168 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19900:31998_1:N:0:GATCAG Contig176898 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17838:32503_1:N:0:GATCAG Contig175337 410 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4935:33151_1:N:0:GATCAG Contig11605 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11300:33037_1:N:0:GATCAG Contig348401 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18529:34148_1:N:0:GATCAG Contig428474 108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3382:34302_1:N:0:GATCAG Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3289:35396_1:Y:0:GATCAG Contig189315 6963 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19669:35333_1:N:0:GATCAG Contig481198 131 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16985:35864_1:N:0:GATCAG Contig651442 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10568:36449_1:N:0:GATCAG Contig521469 244 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18962:36861_1:N:0:GATCAG Contig328088 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9811:37055_1:N:0:GATCAG Contig541233 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11124:37635_1:N:0:GATCAG Contig4454 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4565:37824_1:N:0:GATCAG Contig61620 18385 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19829:37826_1:N:0:GATCAG Contig312918 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19752:37893_1:N:0:GATCAG Contig307270 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18851:39171_1:N:0:GATCAG Contig20076 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20077:39530_1:N:0:GATCAG Contig77832 2102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17544:41361_1:N:0:AATCAG Contig362797 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3697:42898_1:N:0:GATCAG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7878:42767_1:N:0:GATCAG Contig161958 1108 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18437:42920_1:N:0:AATCAG Contig76284 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6450:43724_1:N:0:GATCAG Contig368522 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7792:43929_1:N:0:GATCAG Contig507602 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7707:44272_1:N:0:GATCAG Contig11751 316 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8643:44579_1:N:0:GATCAG Contig52872 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18082:45339_1:Y:0:GATCAG Contig84439 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4084:46540_1:N:0:GATCAG Contig227644 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3806:48068_1:N:0:GATCAG Contig382081 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16328:49411_1:N:0:GATCAG Contig96934 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3411:49828_1:N:0:GATCAG Contig309763 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17168:49878_1:N:0:GATCAG Contig104934 2412 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19132:50445_1:N:0:AATCAG Contig23011 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14554:50988_1:N:0:GATCAG Contig83731 8675 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16565:51009_1:N:0:GATCAG Contig71021 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16335:51341_1:N:0:GATCAG Contig82241 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14610:52046_1:N:0:GATCAG Contig63848 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7336:52358_1:N:0:GATCAG Contig671865 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9664:52489_1:N:0:GATCAG Contig453328 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7362:53814_1:N:0:GATCAG Contig88172 2576 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15176:54794_1:N:0:GATCAG Contig276443 104 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9873:55663_1:N:0:GATCAG Contig10508 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12854:55543_1:N:0:GATCAG Contig406088 171 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14865:55517_1:N:0:GATCAG Contig49687 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13351:55943_1:N:0:GATCAG Contig45126 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16590:57241_1:N:0:GATCAG Contig264801 335 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18709:57605_1:N:0:GATCAG Contig301335 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18542:58884_1:Y:0:GATCAG Contig670879 85 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2049:59303_1:N:0:GATCAG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8115:59315_1:N:0:GATCAG Contig71923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20737:59309_1:N:0:GATCAG Contig609394 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6150:60319_1:N:0:GATCAG Contig413590 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17075:60306_1:N:0:GATCAG Contig563949 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10459:61427_1:N:0:GATCAG Contig462402 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10765:61354_1:N:0:GATCAG Contig562520 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15125:61737_1:N:0:GATCAG Contig483882 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16443:62753_1:N:0:GATCAG Contig16440 751 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14494:64126_1:N:0:GATCAG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19510:64293_1:N:0:GATCAG Contig28589 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18414:65032_1:N:0:GATCAG Contig322121 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:19037:66602_1:N:0:GATCAG Contig528621 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10210:66924_1:N:0:GATCAG Contig695343 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17995:67232_1:N:0:GATCAG Contig347579 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15681:67263_1:N:0:GATCAG Contig631511 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9174:67985_1:N:0:GATCAG Contig134098 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16213:68480_1:N:0:GATCAG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1288:68520_1:N:0:GATCAG Contig652400 95 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17261:68744_1:N:0:GATCAG Contig199403 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20745:68909_1:N:0:GATCAG Contig60114 12550 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13096:69545_1:N:0:GATCAG Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16456:71158_1:N:0:GATCAG Contig16865 199 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7977:71519_1:N:0:GATCAG Contig268473 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6244:72499_1:N:0:GATCAG Contig35824 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18707:72268_1:N:0:GATCAG Contig84327 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4085:74005_1:N:0:GATCAG Contig45395 31219 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15566:74073_1:N:0:GATCAG Contig84290 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5590:74589_1:Y:0:GATCAG Contig98714 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6269:74683_1:N:0:GATCAG Contig88415 9722 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10574:75411_1:N:0:GATCAG Contig644976 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2822:76168_1:N:0:GATCAG Contig661497 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3966:76241_1:Y:0:GATCAG Contig143303 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6782:76478_1:N:0:GATCAG Contig615795 123 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4567:77057_1:N:0:GATCAG Contig411197 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17358:77033_1:Y:0:GATCAG Contig368414 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:16326:77698_1:N:0:GATCAG Contig9244 4080 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6443:78399_1:N:0:GATCAG Contig680908 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8301:78539_1:N:0:GATCAG Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17396:78836_1:N:0:GATCAG Contig422318 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:10677:79071_1:N:0:GATCAG Contig75869 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7134:79564_1:N:0:GATCAG Contig489221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:2499:79902_1:N:0:GATCAG Contig12538 291 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17246:81503_1:N:0:GATCAG Contig345913 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14193:82268_1:N:0:GATCAG Contig177251 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5341:82861_1:N:0:GATCAG Contig10775 577 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6922:83538_1:N:0:GATCAG Contig1221 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12325:84230_1:N:0:GATCAG Contig622176 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:6124:84550_1:N:0:GATCAG Contig77588 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8682:85833_1:Y:0:GATCAG Contig677887 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:12989:85848_1:N:0:GATCAG Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:3977:87158_1:N:0:GATCAG Contig15382 29991 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:17171:87366_1:N:0:GATCAG Contig11209 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:4521:87705_1:N:0:GATCAG Contig368147 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:5300:87854_1:N:0:GATCAG Contig607840 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18239:88886_1:N:0:GATCAG Contig465966 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20100:89561_1:N:0:GATCAG Contig4247 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:13979:90711_1:N:0:GATCAG Contig41355 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15285:92079_1:N:0:GATCAG Contig292231 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18182:92041_1:N:0:GATCAG Contig74469 2211 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:9972:92600_1:N:0:GATCAG Contig687715 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:18639:92783_1:N:0:GATCAG Contig165871 721 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:7982:93619_1:N:0:GATCAG Contig450953 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:1349:94848_1:N:0:GATCAG Contig202566 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:15068:95278_1:Y:0:GATCAG Contig19272 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8214:95611_1:N:0:GATCAG Contig209307 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:11919:96549_1:N:0:GATCAG Contig165520 473 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:14852:96832_1:Y:0:GATCAG Contig229087 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:8673:98273_1:N:0:GATCAG Contig87998 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1102:20558:99350_1:Y:0:GATCAG Contig657950 105 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13603:2129_1:N:0:GATCAG Contig403933 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3934:2773_1:N:0:GATCAG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5745:2865_1:N:0:GATCAG Contig498442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10244:3210_1:N:0:GATCAG Contig650299 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7839:3399_1:N:0:GATCAG Contig34827 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19080:3858_1:N:0:GATCAG Contig41590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17190:5967_1:N:0:GATCAG Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12249:6439_1:N:0:GATCAG Contig18718 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12562:7289_1:N:0:GATCAG Contig390783 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3354:7613_1:N:0:GATCAG Contig16861 406 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3479:8646_1:N:0:GATCAG Contig81775 1030 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5910:8543_1:N:0:GATCAG Contig502332 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11369:8740_1:N:0:GATCAG Contig82316 1927 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19364:8615_1:N:0:GATCAG Contig198619 12322 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11092:9158_1:N:0:GATCAG Contig655750 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6011:10661_1:N:0:GATCAG Contig66311 4541 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2888:11201_1:Y:0:GATCAG Contig392906 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13007:12737_1:N:0:GATCAG Contig475499 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20052:12783_1:N:0:GATCAG Contig513848 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12981:13511_1:N:0:GATCAG Contig364773 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3948:14193_1:N:0:GATCAG Contig537351 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3123:14797_1:N:0:GATCAG Contig125269 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18391:16721_1:Y:0:GATCAG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9965:17886_1:N:0:GATCAG Contig464357 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7342:18095_1:N:0:GATCAG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5155:19112_1:N:0:GATCAG Contig112765 945 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9341:20562_1:N:0:GATCAG Contig391011 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9609:20631_1:N:0:GATCAG Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11306:20508_1:Y:0:GAACAG Contig557973 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19565:21168_1:N:0:GATCAG Contig39767 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16772:21600_1:N:0:AATCAG Contig235693 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19662:21515_1:N:0:GATCAG Contig61717 11872 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15273:22484_1:N:0:GATCAG Contig548765 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8638:22773_1:N:0:GATCAG Contig61620 18385 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4867:23078_1:N:0:GATCAG Contig600622 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14962:24044_1:N:0:GATCAG Contig591795 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3120:24938_1:N:0:GATCAG Contig376910 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16808:24952_1:N:0:AATCAG Contig205659 6577 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6485:26268_1:N:0:GATCAG Contig285268 69 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12893:26702_1:N:0:GATCAG Contig157385 1106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10151:26869_1:N:0:GATCAG Contig381780 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15907:26957_1:N:0:GATCAG Contig618735 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14198:27127_1:N:0:AATCAG Contig674417 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8106:27697_1:N:0:GATCAG Contig101130 1736 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17860:28366_1:N:0:GATCAG Contig666738 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4382:28677_1:N:0:GATCAG Contig310590 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5246:29321_1:N:0:GATCAG Contig381595 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5350:30010_1:N:0:GATCAG Contig442804 73 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9219:30020_1:N:0:GATCAG Contig299354 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15749:30413_1:N:0:GATCAG Contig4352 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16461:31010_1:N:0:GATCAG Contig364165 130 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8285:31772_1:Y:0:GATCAG Contig46276 5981 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3525:32125_1:N:0:GATCAG Contig532149 102 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5155:32898_1:N:0:GATCAG Contig55734 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7566:32944_1:N:0:GATCAG Contig96389 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13270:33943_1:N:0:GATCAG Contig171895 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18905:33964_1:N:0:GATCAG Contig104139 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9343:34150_1:N:0:GATCAG Contig105943 762 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10575:34408_1:N:0:AATCAG Contig280146 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19943:34468_1:N:0:AATCAG Contig55358 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2597:35508_1:N:0:GATCAG Contig278034 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10531:35620_1:N:0:GATCAG Contig186176 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10689:35796_1:N:0:GATCAG Contig325648 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20018:35807_1:N:0:GATCAG Contig66277 4036 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14723:36614_1:N:0:GATCAG Contig44707 8096 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7807:36838_1:N:0:GATCAG Contig145895 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16445:36751_1:N:0:GATCAG Contig49739 5161 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7197:38661_1:N:0:GATCAG Contig363124 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17404:38773_1:Y:0:GATCAC Contig57360 6454 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8244:39145_1:N:0:GATCAG Contig29572 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6624:39680_1:N:0:GATCAG Contig149412 1448 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17193:39831_1:N:0:GATCAG Contig103718 2117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10419:41699_1:N:0:GATCAG Contig93917 9889 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8424:41775_1:N:0:GATCAG Contig386160 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14316:41758_1:N:0:GATCAG Contig34380 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19897:41926_1:N:0:GATCAG Contig371751 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15044:42085_1:Y:0:GATCAG Contig114329 853 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19462:42051_1:N:0:GATCAG Contig78294 9376 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16549:42359_1:N:0:AATCAG Contig406963 136 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:17182:43231_1:N:0:GATCAG Contig282467 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12879:43537_1:N:0:GATCAG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18607:43521_1:N:0:GATCAG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4536:44224_1:N:0:GATCAG Contig180854 1533 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12483:44040_1:N:0:GATCAG Contig187744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13113:44031_1:N:0:GATCAG Contig24455 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12745:47235_1:N:0:GATCAG Contig54063 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14806:47820_1:N:0:GATCAG Contig380675 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12797:48573_1:Y:0:GATCAG Contig539675 72 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9821:48987_1:N:0:GATCAG Contig292777 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8348:49869_1:N:0:GATCAG Contig303073 111 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10998:50149_1:N:0:GATCAG Contig100509 1078 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4846:51347_1:N:0:GATCAG Contig522819 109 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20584:52021_1:N:0:GATCAG Contig618735 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13067:52444_1:N:0:GATCAG Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14540:52887_1:N:0:GATCAG Contig312699 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2467:53889_1:N:0:GATCAG Contig18716 78247 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16407:54054_1:N:0:AATCAG Contig493478 286 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6538:54727_1:N:0:GATCAG Contig124592 5162 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13963:55989_1:N:0:GATCAG Contig143855 2495 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7155:56145_1:N:0:GATCAG Contig172700 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6802:56622_1:N:0:GATCAG Contig175645 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11348:57158_1:Y:0:GATCAG Contig591136 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14488:57245_1:N:0:GATCAG Contig27610 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16137:57119_1:N:0:GATCAG Contig515784 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2135:58740_1:N:0:GATCAG Contig60405 4730 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13296:58725_1:Y:0:GATCAG Contig164523 651 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8730:59304_1:N:0:GATCAG Contig136469 3557 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2342:59650_1:N:0:GATCAG Contig393818 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8047:59605_1:N:0:GATCAG Contig377882 75 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9171:60491_1:Y:0:GATCAG Contig18442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6183:60978_1:N:0:GATCAG Contig562656 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10202:61389_1:N:0:GATCAG Contig680495 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12658:61446_1:N:0:AATCAG Contig441188 245 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5851:61879_1:N:0:GATCAG Contig18271 29166 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2689:62323_1:N:0:GATCAG Contig384199 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13993:62351_1:N:0:GATCAG Contig59209 1650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6741:62594_1:N:0:GATCAG Contig64591 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13297:64288_1:N:0:GATCAG Contig26630 8979 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6738:64666_1:N:0:GATCAG Contig460975 78 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8642:65304_1:N:0:AATCAG Contig192979 564 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21244:65917_1:N:0:GATCAG Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6368:66474_1:N:0:GATCAG Contig646592 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5205:67110_1:N:0:GATCAG Contig315471 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5449:67533_1:N:0:GATCAG Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6038:68171_1:N:0:GATCAG Contig216486 1416 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7566:68138_1:Y:0:GATCAG Contig176831 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9971:68283_1:N:0:GATCAG Contig348877 324 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15664:68905_1:N:0:GATCAG Contig436908 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15814:69261_1:N:0:GATCAG Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16250:69497_1:N:0:GATCAG Contig328672 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12052:70425_1:N:0:GATCAG Contig543481 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18329:70451_1:N:0:GATCAG Contig45395 31218 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8934:71454_1:N:0:GATCAG Contig193061 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19654:71468_1:N:0:GATCAG Contig205286 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1740:72667_1:N:0:GATCAG Contig279822 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9738:73055_1:N:0:GATCAG Contig288352 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4896:73980_1:N:0:GATCAG Contig191004 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2034:74161_1:N:0:GATCAG Contig126583 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19649:74157_1:Y:0:GATCAG Contig462265 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14708:75424_1:N:0:GATCAG Contig164256 456 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:20862:75260_1:N:0:GATCAG Contig126007 852 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8575:76128_1:N:0:GATCAG Contig178534 1616 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:3931:76414_1:N:0:GATCAG Contig58165 2666 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10451:77332_1:N:0:GATCAG Contig54452 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14361:77391_1:N:0:GATCAG Contig526076 93 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5235:77616_1:N:0:GATCAG Contig34468 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10120:77647_1:N:0:GATCAG Contig166413 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1387:78239_1:N:0:GATCAG Contig97707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:21165:78241_1:N:0:GATCAG Contig25963 18155 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6510:78264_1:N:0:GATCAG Contig509821 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2930:78668_1:N:0:GATCAG Contig594063 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5017:78570_1:N:0:GATCAG Contig475923 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4827:78838_1:N:0:GATCAG Contig462768 142 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18366:79222_1:N:0:AATCAG Contig627556 77 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15142:80205_1:N:0:GATCAG Contig103576 3677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2580:80404_1:N:0:GATCAG Contig15386 20471 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4092:80396_1:N:0:GATCAG Contig175337 409 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19845:80312_1:N:0:GATCAG Contig90154 3079 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7819:80814_1:N:0:GATCAG Contig305242 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18774:81348_1:N:0:GATCAG Contig319209 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13778:82557_1:N:0:GATCAG Contig364773 107 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18903:83090_1:N:0:GATCAG Contig178183 951 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2254:83313_1:N:0:GATCAG Contig123716 1095 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:1165:84495_1:N:0:GATCAG Contig651442 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:18439:84813_1:N:0:GATCAG Contig244615 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16159:87753_1:N:0:GATCAG Contig39472 112 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2024:88223_1:N:0:GATCAG Contig306671 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15391:88247_1:N:0:GATCAG Contig226320 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:13223:88468_1:Y:0:GATCAG Contig28913 2785 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9122:88772_1:N:0:GATCAG Contig499630 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8878:89289_1:N:0:AATCAG Contig547894 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15954:90760_1:N:0:GATCAG Contig96166 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:14339:91011_1:N:0:GATCAG Contig68885 7365 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9068:91550_1:N:0:GATCAG Contig160906 725 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9243:91705_1:N:0:GATCAG Contig172608 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:2088:92047_1:N:0:GATCAG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11638:92163_1:N:0:AATCAG Contig497260 98 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11968:92007_1:N:0:GATCAG Contig211035 785 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:15409:92068_1:N:0:GATCAG Contig70429 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4684:92458_1:N:0:GATCAG Contig208563 548 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:11386:93011_1:N:0:AATCAG Contig522122 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9070:93432_1:N:0:GATCAG Contig341756 94 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:9623:94513_1:Y:0:GATCAG Contig193635 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:8095:94850_1:N:0:GATCAG Contig266530 83 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7887:95341_1:Y:0:GATCAG Contig185309 677 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:4805:95514_1:N:0:GATCAG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:6108:97302_1:N:0:GATCAG Contig44716 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:16900:97448_1:N:0:GATCAG Contig508865 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:10651:97687_1:N:0:AATCAG Contig39649 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:12975:97562_1:N:0:GATCAG Contig92857 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:19294:98876_1:N:0:GATCAG Contig429218 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:5707:99088_1:N:0:GATCAG Contig37026 12198 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1103:7773:99562_1:N:0:GATCAG Contig653407 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12433:2145_1:N:0:GATCAG Contig230349 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9363:3029_1:N:0:GATCAG Contig97707 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20402:3763_1:N:0:GATCAG Contig7071 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3553:5048_1:N:0:GATCAG Contig469346 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17882:6086_1:N:0:GATCAG Contig137666 1393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7940:6432_1:N:0:GATCAG Contig401800 74 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13239:6483_1:N:0:GATCAG Contig322052 402 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5488:6938_1:N:0:GATCAG Contig138261 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9951:6788_1:N:0:GATCAG Contig311744 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2800:7591_1:N:0:GATCAG Contig222653 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16744:8103_1:N:0:GATCAG Contig27416 33815 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13244:8351_1:N:0:GATCAG Contig350786 100 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10820:8746_1:N:0:GATCAG Contig75535 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6413:9278_1:N:0:GATCAG Contig430206 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7150:9290_1:N:0:GATCAG Contig470404 122 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2858:9621_1:N:0:GATCAG Contig43132 9196 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1426:11862_1:N:0:GATCAG Contig98010 1760 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17071:12171_1:N:0:GATCAG Contig69363 2719 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9617:12991_1:N:0:GATCAG Contig210030 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12140:13315_1:N:0:GATCAG Contig33233 10579 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2316:13813_1:N:0:GATCAG Contig37531 650 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20545:14705_1:N:0:GATCAG Contig185232 1043 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12879:15747_1:N:0:GATCAG Contig66461 11249 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16004:16096_1:N:0:GATCAG Contig471698 143 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8066:16421_1:N:0:GATCAG Contig599991 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1177:16922_1:N:0:GATCAG Contig12288 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2179:16932_1:N:0:GATCAG Contig11923 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17276:16853_1:N:0:AATCAG Contig639010 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15873:17590_1:N:0:GATCAG Contig94649 6486 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3316:17972_1:N:0:GATCAG Contig52530 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14396:17786_1:N:0:GATCAG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14839:17935_1:N:0:GATCAG Contig204185 508 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18651:18511_1:N:0:GATCAG Contig373202 106 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4232:19082_1:N:0:GATCAG Contig540856 92 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18042:19094_1:N:0:GATCAG Contig579554 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7310:19620_1:N:0:GATCAG Contig127394 5049 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8720:19598_1:N:0:GATCAG Contig393611 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7495:19774_1:N:0:GATCAG Contig440925 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7793:20440_1:N:0:GATCAG Contig471935 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18823:21372_1:N:0:GATCAG Contig3611 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10592:22330_1:N:0:GATCAG Contig208562 703 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2303:22516_1:N:0:AATCAG Contig518271 91 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12061:23552_1:N:0:GATCAG Contig189495 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17057:24068_1:N:0:AATCAG Contig334803 86 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3549:25446_1:N:0:AATCAG Contig35190 29553 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14770:25302_1:N:0:GATCAG Contig365347 96 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15872:29780_1:N:0:GATCAG Contig587005 80 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11056:30193_1:N:0:GATCAG Contig535446 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18563:30480_1:N:0:GATCAG Contig47801 6477 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5354:30648_1:N:0:GATCAG Contig57612 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11976:31298_1:Y:0:GATCAG Contig20759 19586 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8785:31908_1:N:0:GATCAG Contig157548 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1426:32183_1:N:0:GATCAG Contig20442 18467 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20229:33590_1:Y:0:GATCAG Contig352096 117 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3475:34704_1:N:0:GATCAG Contig523940 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6042:35120_1:N:0:GATCAG Contig106032 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:6197:35150_1:N:0:GATTAG Contig550772 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1728:36425_1:Y:0:GATCAG Contig51749 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20399:37013_1:N:0:GATCAG Contig77186 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17950:37653_1:N:0:GATCAG Contig613343 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20823:37773_1:Y:0:GATCAG Contig320509 79 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4375:38745_1:N:0:GATCAG Contig622176 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18819:38812_1:N:0:GATCAG Contig499198 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2892:39438_1:N:0:GATCAG Contig457155 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11645:39946_1:N:0:GATCAG Contig595430 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4232:40181_1:N:0:GATCAG Contig583785 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15472:40951_1:N:0:GATCAG Contig506131 120 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17166:41207_1:N:0:AATCAG Contig617279 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:2827:43231_1:N:0:GATCAG Contig11591 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9884:43531_1:Y:0:GATCAG Contig510962 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13269:44059_1:N:0:GATCAG Contig96916 2520 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20353:44707_1:Y:0:GATCAG Contig67174 3831 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18719:46200_1:N:0:GATCAG Contig684398 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17816:46890_1:N:0:GATCAG Contig373633 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18000:47141_1:N:0:GATCAG Contig184202 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13576:47561_1:Y:0:GATCAG Contig226289 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8020:48122_1:N:0:GATCAG Contig16979 528 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11597:48104_1:N:0:GATCAG Contig107186 1331 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:12846:48075_1:N:0:GATCAG Contig9570 1850 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14258:48247_1:N:0:GATCAG Contig58165 2665 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20433:48025_1:Y:0:GATCTG Contig509943 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20416:48910_1:N:0:GATCAG Contig623404 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9522:49064_1:N:0:GATCAG Contig8907 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18903:49109_1:N:0:GATCAG Contig148650 10856 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18532:50243_1:N:0:GATCAG Contig211686 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18484:50517_1:N:0:GATCAG Contig146023 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9805:51097_1:N:0:GATCAG Contig433703 698 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3274:52608_1:N:0:GATCAG Contig54452 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8975:53266_1:N:0:GATCAG Contig264801 335 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7965:53563_1:N:0:GATCAG Contig259307 99 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4380:54381_1:N:0:GATCAG Contig128909 3374 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14352:54388_1:Y:0:GATCAG Contig181382 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:4700:54653_1:N:0:TATCAG Contig537351 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:14504:54685_1:N:0:AATCAG Contig673293 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1767:54969_1:N:0:GATCAG Contig212938 1394 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10203:54852_1:N:0:GATCAG Contig631031 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:5254:55014_1:N:0:GATCAG Contig84290 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7830:55757_1:N:0:GATCAG Contig524673 71 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18975:56113_1:N:0:GATCAG Contig347393 17158 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:15972:56481_1:N:0:GATCAG Contig553542 76 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9435:57281_1:N:0:GATCAG Contig524673 70 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:7825:58055_1:N:0:GATCAG Contig373171 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8912:58135_1:Y:0:GATCAG Contig177655 648 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17781:58328_1:N:0:GATCAG Contig578197 442 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18459:59198_1:N:0:GATCAG Contig608319 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16854:59469_1:Y:0:GATCAG Contig511316 174 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:18257:59592_1:N:0:AATCAG Contig90138 12437 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:16187:60627_1:N:0:GATCAG Contig398511 82 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:3611:63079_1:N:0:GATCAG Contig112006 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:13215:64239_1:N:0:GATCAG Contig345500 621 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:17509:64451_1:N:0:GATCAG Contig419995 87 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:10188:64849_1:N:0:GATCAG Contig343139 127 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:21052:66490_1:N:0:GATCAG Contig600899 270 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:11521:66723_1:N:0:GATCAG Contig173161 393 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:8619:66785_1:N:0:AATCAG Contig28910 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:20393:67257_1:Y:0:GATCAG Contig483352 2 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:19710:67647_1:N:0:GATCAG Contig294033 88 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:9985:70713_1:N:0:GATCAG Contig516796 1 Chromosomal sequence could not be extracted for HWI-C00124:164:C7URDANXX:1:1104:1269:71943_1:N:0:GATCAG Contig41355 2 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 674125 (67.41%) aligned 0 times 130611 (13.06%) aligned exactly 1 time 195264 (19.53%) aligned >1 times 32.59% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 620565 (62.06%) aligned 0 times 141158 (14.12%) aligned exactly 1 time 238277 (23.83%) aligned >1 times 37.94% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 621521 (62.15%) aligned 0 times 140629 (14.06%) aligned exactly 1 time 237850 (23.79%) aligned >1 times 37.85% overall alignment rate 1000000 reads; of these: 1000000 (100.00%) were unpaired; of these: 673648 (67.36%) aligned 0 times 129972 (13.00%) aligned exactly 1 time 196380 (19.64%) aligned >1 times 32.64% overall alignment rate Processed 1000000 sequences so far Successfully deleted the temporary files zr1394_9_s456_trimmed.fq.gz_C_to_T.fastq and zr1394_9_s456_trimmed.fq.gz_G_to_A.fastq Final Alignment report ====================== Sequences analysed in total: 1000000 Number of alignments with a unique best hit from the different alignments: 346612 Mapping efficiency: 34.7% Final Cytosine Methylation Report ================================= Total number of C's analysed: 2052482 Total methylated C's in CpG context: 232563 Total methylated C's in CHG context: 7170 Total methylated C's in CHH context: 97165 Total methylated C's in Unknown context: 62 Total unmethylated C's in CpG context: 54861 Total unmethylated C's in CHG context: 402828 Total unmethylated C's in CHH context: 1257895 Total unmethylated C's in Unknown context: 337 C methylated in CpG context: 80.9% C methylated in CHG context: 1.7% C methylated in CHH context: 7.2% C methylated in Unknown context (CN or CHN): 15.5% Bismark completed in 0d 8h 40m 21s ==================== Bismark run complete ==================== gzip: stdout: Broken pipe