[2018-05-17 10:04:04,223] multiqc [DEBUG ] No MultiQC config found: /usr/local/lib/python2.7/dist-packages/multiqc-1.6.dev0-py2.7.egg/multiqc_config.yaml [2018-05-17 10:04:04,223] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2018-05-17 10:04:04,224] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-05-17 10:04:04,224] multiqc [DEBUG ] Command used: /usr/local/bin/multiqc EPI-103_S27_L005_R1_001.fastq.gz_trimming_report.txt EPI-103_S27_L005_R2_001.fastq.gz_trimming_report.txt EPI-104_S28_L005_R1_001.fastq.gz_trimming_report.txt EPI-104_S28_L005_R2_001.fastq.gz_trimming_report.txt EPI-111_S29_L005_R1_001.fastq.gz_trimming_report.txt EPI-111_S29_L005_R2_001.fastq.gz_trimming_report.txt EPI-113_S30_L005_R1_001.fastq.gz_trimming_report.txt EPI-113_S30_L005_R2_001.fastq.gz_trimming_report.txt EPI-119_S31_L005_R1_001.fastq.gz_trimming_report.txt EPI-119_S31_L005_R2_001.fastq.gz_trimming_report.txt EPI-120_S32_L005_R1_001.fastq.gz_trimming_report.txt EPI-120_S32_L005_R2_001.fastq.gz_trimming_report.txt EPI-127_S33_L005_R1_001.fastq.gz_trimming_report.txt EPI-127_S33_L005_R2_001.fastq.gz_trimming_report.txt EPI-128_S34_L005_R1_001.fastq.gz_trimming_report.txt EPI-128_S34_L005_R2_001.fastq.gz_trimming_report.txt EPI-135_S35_L005_R1_001.fastq.gz_trimming_report.txt EPI-135_S35_L005_R2_001.fastq.gz_trimming_report.txt EPI-136_S36_L005_R1_001.fastq.gz_trimming_report.txt EPI-136_S36_L005_R2_001.fastq.gz_trimming_report.txt EPI-143_S37_L005_R1_001.fastq.gz_trimming_report.txt EPI-143_S37_L005_R2_001.fastq.gz_trimming_report.txt EPI-145_S38_L005_R1_001.fastq.gz_trimming_report.txt EPI-145_S38_L005_R2_001.fastq.gz_trimming_report.txt EPI-151_S2_L002_R1_001.fastq.gz_trimming_report.txt EPI-151_S2_L002_R2_001.fastq.gz_trimming_report.txt EPI-152_S3_L002_R1_001.fastq.gz_trimming_report.txt EPI-152_S3_L002_R2_001.fastq.gz_trimming_report.txt EPI-153_S4_L002_R1_001.fastq.gz_trimming_report.txt EPI-153_S4_L002_R2_001.fastq.gz_trimming_report.txt EPI-154_S5_L002_R1_001.fastq.gz_trimming_report.txt EPI-154_S5_L002_R2_001.fastq.gz_trimming_report.txt EPI-159_S6_L002_R1_001.fastq.gz_trimming_report.txt EPI-159_S6_L002_R2_001.fastq.gz_trimming_report.txt EPI-160_S7_L002_R1_001.fastq.gz_trimming_report.txt EPI-160_S7_L002_R2_001.fastq.gz_trimming_report.txt EPI-161_S8_L002_R1_001.fastq.gz_trimming_report.txt EPI-161_S8_L002_R2_001.fastq.gz_trimming_report.txt EPI-162_S9_L002_R1_001.fastq.gz_trimming_report.txt EPI-162_S9_L002_R2_001.fastq.gz_trimming_report.txt EPI-167_S10_L002_R1_001.fastq.gz_trimming_report.txt EPI-167_S10_L002_R2_001.fastq.gz_trimming_report.txt EPI-168_S11_L002_R1_001.fastq.gz_trimming_report.txt EPI-168_S11_L002_R2_001.fastq.gz_trimming_report.txt EPI-169_S12_L002_R1_001.fastq.gz_trimming_report.txt EPI-169_S12_L002_R2_001.fastq.gz_trimming_report.txt EPI-170_S13_L002_R1_001.fastq.gz_trimming_report.txt EPI-170_S13_L002_R2_001.fastq.gz_trimming_report.txt EPI-175_S14_L003_R1_001.fastq.gz_trimming_report.txt EPI-175_S14_L003_R2_001.fastq.gz_trimming_report.txt EPI-176_S15_L003_R1_001.fastq.gz_trimming_report.txt EPI-176_S15_L003_R2_001.fastq.gz_trimming_report.txt EPI-181_S16_L003_R1_001.fastq.gz_trimming_report.txt EPI-181_S16_L003_R2_001.fastq.gz_trimming_report.txt EPI-182_S17_L003_R1_001.fastq.gz_trimming_report.txt EPI-182_S17_L003_R2_001.fastq.gz_trimming_report.txt EPI-184_S18_L003_R1_001.fastq.gz_trimming_report.txt EPI-184_S18_L003_R2_001.fastq.gz_trimming_report.txt EPI-185_S19_L003_R1_001.fastq.gz_trimming_report.txt EPI-185_S19_L003_R2_001.fastq.gz_trimming_report.txt EPI-187_S20_L003_R1_001.fastq.gz_trimming_report.txt EPI-187_S20_L003_R2_001.fastq.gz_trimming_report.txt EPI-188_S21_L003_R1_001.fastq.gz_trimming_report.txt EPI-188_S21_L003_R2_001.fastq.gz_trimming_report.txt EPI-193_S22_L003_R1_001.fastq.gz_trimming_report.txt EPI-193_S22_L003_R2_001.fastq.gz_trimming_report.txt EPI-194_S23_L003_R1_001.fastq.gz_trimming_report.txt EPI-194_S23_L003_R2_001.fastq.gz_trimming_report.txt EPI-199_S24_L003_R1_001.fastq.gz_trimming_report.txt EPI-199_S24_L003_R2_001.fastq.gz_trimming_report.txt EPI-200_S25_L003_R1_001.fastq.gz_trimming_report.txt EPI-200_S25_L003_R2_001.fastq.gz_trimming_report.txt EPI-205_S26_L004_R1_001.fastq.gz_trimming_report.txt EPI-205_S26_L004_R2_001.fastq.gz_trimming_report.txt EPI-206_S27_L004_R1_001.fastq.gz_trimming_report.txt EPI-206_S27_L004_R2_001.fastq.gz_trimming_report.txt EPI-208_S28_L004_R1_001.fastq.gz_trimming_report.txt EPI-208_S28_L004_R2_001.fastq.gz_trimming_report.txt EPI-209_S29_L004_R1_001.fastq.gz_trimming_report.txt EPI-209_S29_L004_R2_001.fastq.gz_trimming_report.txt EPI-214_S30_L004_R1_001.fastq.gz_trimming_report.txt EPI-214_S30_L004_R2_001.fastq.gz_trimming_report.txt EPI-215_S31_L004_R1_001.fastq.gz_trimming_report.txt EPI-215_S31_L004_R2_001.fastq.gz_trimming_report.txt EPI-220_S32_L004_R1_001.fastq.gz_trimming_report.txt EPI-220_S32_L004_R2_001.fastq.gz_trimming_report.txt EPI-221_S33_L004_R1_001.fastq.gz_trimming_report.txt EPI-221_S33_L004_R2_001.fastq.gz_trimming_report.txt EPI-226_S34_L004_R1_001.fastq.gz_trimming_report.txt EPI-226_S34_L004_R2_001.fastq.gz_trimming_report.txt EPI-227_S35_L004_R1_001.fastq.gz_trimming_report.txt EPI-227_S35_L004_R2_001.fastq.gz_trimming_report.txt EPI-229_S36_L004_R1_001.fastq.gz_trimming_report.txt EPI-229_S36_L004_R2_001.fastq.gz_trimming_report.txt EPI-230_S37_L004_R1_001.fastq.gz_trimming_report.txt EPI-230_S37_L004_R2_001.fastq.gz_trimming_report.txt EPI-41_S38_L005_R1_001.fastq.gz_trimming_report.txt EPI-41_S38_L005_R2_001.fastq.gz_trimming_report.txt EPI-42_S39_L005_R1_001.fastq.gz_trimming_report.txt EPI-42_S39_L005_R2_001.fastq.gz_trimming_report.txt EPI-43_S40_L005_R1_001.fastq.gz_trimming_report.txt EPI-43_S40_L005_R2_001.fastq.gz_trimming_report.txt EPI-44_S41_L005_R1_001.fastq.gz_trimming_report.txt EPI-44_S41_L005_R2_001.fastq.gz_trimming_report.txt . [2018-05-17 10:04:04,513] multiqc [DEBUG ] Latest MultiQC version is v1.5 [2018-05-17 10:04:04,513] multiqc [INFO ] This is MultiQC v1.6.dev0 [2018-05-17 10:04:04,513] multiqc [DEBUG ] Command : /usr/local/bin/multiqc EPI-103_S27_L005_R1_001.fastq.gz_trimming_report.txt EPI-103_S27_L005_R2_001.fastq.gz_trimming_report.txt EPI-104_S28_L005_R1_001.fastq.gz_trimming_report.txt EPI-104_S28_L005_R2_001.fastq.gz_trimming_report.txt EPI-111_S29_L005_R1_001.fastq.gz_trimming_report.txt EPI-111_S29_L005_R2_001.fastq.gz_trimming_report.txt EPI-113_S30_L005_R1_001.fastq.gz_trimming_report.txt EPI-113_S30_L005_R2_001.fastq.gz_trimming_report.txt EPI-119_S31_L005_R1_001.fastq.gz_trimming_report.txt EPI-119_S31_L005_R2_001.fastq.gz_trimming_report.txt EPI-120_S32_L005_R1_001.fastq.gz_trimming_report.txt EPI-120_S32_L005_R2_001.fastq.gz_trimming_report.txt EPI-127_S33_L005_R1_001.fastq.gz_trimming_report.txt EPI-127_S33_L005_R2_001.fastq.gz_trimming_report.txt EPI-128_S34_L005_R1_001.fastq.gz_trimming_report.txt EPI-128_S34_L005_R2_001.fastq.gz_trimming_report.txt EPI-135_S35_L005_R1_001.fastq.gz_trimming_report.txt EPI-135_S35_L005_R2_001.fastq.gz_trimming_report.txt EPI-136_S36_L005_R1_001.fastq.gz_trimming_report.txt EPI-136_S36_L005_R2_001.fastq.gz_trimming_report.txt EPI-143_S37_L005_R1_001.fastq.gz_trimming_report.txt EPI-143_S37_L005_R2_001.fastq.gz_trimming_report.txt EPI-145_S38_L005_R1_001.fastq.gz_trimming_report.txt EPI-145_S38_L005_R2_001.fastq.gz_trimming_report.txt EPI-151_S2_L002_R1_001.fastq.gz_trimming_report.txt EPI-151_S2_L002_R2_001.fastq.gz_trimming_report.txt EPI-152_S3_L002_R1_001.fastq.gz_trimming_report.txt EPI-152_S3_L002_R2_001.fastq.gz_trimming_report.txt EPI-153_S4_L002_R1_001.fastq.gz_trimming_report.txt EPI-153_S4_L002_R2_001.fastq.gz_trimming_report.txt EPI-154_S5_L002_R1_001.fastq.gz_trimming_report.txt EPI-154_S5_L002_R2_001.fastq.gz_trimming_report.txt EPI-159_S6_L002_R1_001.fastq.gz_trimming_report.txt EPI-159_S6_L002_R2_001.fastq.gz_trimming_report.txt EPI-160_S7_L002_R1_001.fastq.gz_trimming_report.txt EPI-160_S7_L002_R2_001.fastq.gz_trimming_report.txt EPI-161_S8_L002_R1_001.fastq.gz_trimming_report.txt EPI-161_S8_L002_R2_001.fastq.gz_trimming_report.txt EPI-162_S9_L002_R1_001.fastq.gz_trimming_report.txt EPI-162_S9_L002_R2_001.fastq.gz_trimming_report.txt EPI-167_S10_L002_R1_001.fastq.gz_trimming_report.txt EPI-167_S10_L002_R2_001.fastq.gz_trimming_report.txt EPI-168_S11_L002_R1_001.fastq.gz_trimming_report.txt EPI-168_S11_L002_R2_001.fastq.gz_trimming_report.txt EPI-169_S12_L002_R1_001.fastq.gz_trimming_report.txt EPI-169_S12_L002_R2_001.fastq.gz_trimming_report.txt EPI-170_S13_L002_R1_001.fastq.gz_trimming_report.txt EPI-170_S13_L002_R2_001.fastq.gz_trimming_report.txt EPI-175_S14_L003_R1_001.fastq.gz_trimming_report.txt EPI-175_S14_L003_R2_001.fastq.gz_trimming_report.txt EPI-176_S15_L003_R1_001.fastq.gz_trimming_report.txt EPI-176_S15_L003_R2_001.fastq.gz_trimming_report.txt EPI-181_S16_L003_R1_001.fastq.gz_trimming_report.txt EPI-181_S16_L003_R2_001.fastq.gz_trimming_report.txt EPI-182_S17_L003_R1_001.fastq.gz_trimming_report.txt EPI-182_S17_L003_R2_001.fastq.gz_trimming_report.txt EPI-184_S18_L003_R1_001.fastq.gz_trimming_report.txt EPI-184_S18_L003_R2_001.fastq.gz_trimming_report.txt EPI-185_S19_L003_R1_001.fastq.gz_trimming_report.txt EPI-185_S19_L003_R2_001.fastq.gz_trimming_report.txt EPI-187_S20_L003_R1_001.fastq.gz_trimming_report.txt EPI-187_S20_L003_R2_001.fastq.gz_trimming_report.txt EPI-188_S21_L003_R1_001.fastq.gz_trimming_report.txt EPI-188_S21_L003_R2_001.fastq.gz_trimming_report.txt EPI-193_S22_L003_R1_001.fastq.gz_trimming_report.txt EPI-193_S22_L003_R2_001.fastq.gz_trimming_report.txt EPI-194_S23_L003_R1_001.fastq.gz_trimming_report.txt EPI-194_S23_L003_R2_001.fastq.gz_trimming_report.txt EPI-199_S24_L003_R1_001.fastq.gz_trimming_report.txt EPI-199_S24_L003_R2_001.fastq.gz_trimming_report.txt EPI-200_S25_L003_R1_001.fastq.gz_trimming_report.txt EPI-200_S25_L003_R2_001.fastq.gz_trimming_report.txt EPI-205_S26_L004_R1_001.fastq.gz_trimming_report.txt EPI-205_S26_L004_R2_001.fastq.gz_trimming_report.txt EPI-206_S27_L004_R1_001.fastq.gz_trimming_report.txt EPI-206_S27_L004_R2_001.fastq.gz_trimming_report.txt EPI-208_S28_L004_R1_001.fastq.gz_trimming_report.txt EPI-208_S28_L004_R2_001.fastq.gz_trimming_report.txt EPI-209_S29_L004_R1_001.fastq.gz_trimming_report.txt EPI-209_S29_L004_R2_001.fastq.gz_trimming_report.txt EPI-214_S30_L004_R1_001.fastq.gz_trimming_report.txt EPI-214_S30_L004_R2_001.fastq.gz_trimming_report.txt EPI-215_S31_L004_R1_001.fastq.gz_trimming_report.txt EPI-215_S31_L004_R2_001.fastq.gz_trimming_report.txt EPI-220_S32_L004_R1_001.fastq.gz_trimming_report.txt EPI-220_S32_L004_R2_001.fastq.gz_trimming_report.txt EPI-221_S33_L004_R1_001.fastq.gz_trimming_report.txt EPI-221_S33_L004_R2_001.fastq.gz_trimming_report.txt EPI-226_S34_L004_R1_001.fastq.gz_trimming_report.txt EPI-226_S34_L004_R2_001.fastq.gz_trimming_report.txt EPI-227_S35_L004_R1_001.fastq.gz_trimming_report.txt EPI-227_S35_L004_R2_001.fastq.gz_trimming_report.txt EPI-229_S36_L004_R1_001.fastq.gz_trimming_report.txt EPI-229_S36_L004_R2_001.fastq.gz_trimming_report.txt EPI-230_S37_L004_R1_001.fastq.gz_trimming_report.txt EPI-230_S37_L004_R2_001.fastq.gz_trimming_report.txt EPI-41_S38_L005_R1_001.fastq.gz_trimming_report.txt EPI-41_S38_L005_R2_001.fastq.gz_trimming_report.txt EPI-42_S39_L005_R1_001.fastq.gz_trimming_report.txt EPI-42_S39_L005_R2_001.fastq.gz_trimming_report.txt EPI-43_S40_L005_R1_001.fastq.gz_trimming_report.txt EPI-43_S40_L005_R2_001.fastq.gz_trimming_report.txt EPI-44_S41_L005_R1_001.fastq.gz_trimming_report.txt EPI-44_S41_L005_R2_001.fastq.gz_trimming_report.txt . [2018-05-17 10:04:04,513] multiqc [DEBUG ] Working dir : /mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs [2018-05-17 10:04:04,513] multiqc [INFO ] Template : default [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-103_S27_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-103_S27_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-104_S28_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-104_S28_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-111_S29_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-111_S29_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-113_S30_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-113_S30_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-119_S31_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-119_S31_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,514] multiqc [INFO ] Searching 'EPI-120_S32_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-120_S32_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-127_S33_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-127_S33_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-128_S34_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-128_S34_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-135_S35_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-135_S35_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-136_S36_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-136_S36_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-143_S37_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,515] multiqc [INFO ] Searching 'EPI-143_S37_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-145_S38_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-145_S38_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-151_S2_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-151_S2_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-152_S3_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-152_S3_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-153_S4_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-153_S4_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-154_S5_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-154_S5_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,516] multiqc [INFO ] Searching 'EPI-159_S6_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-159_S6_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-160_S7_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-160_S7_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-161_S8_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-161_S8_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-162_S9_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-162_S9_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-167_S10_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-167_S10_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-168_S11_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,517] multiqc [INFO ] Searching 'EPI-168_S11_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-169_S12_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-169_S12_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-170_S13_L002_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-170_S13_L002_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-175_S14_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-175_S14_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-176_S15_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-176_S15_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-181_S16_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-181_S16_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-182_S17_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,518] multiqc [INFO ] Searching 'EPI-182_S17_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-184_S18_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-184_S18_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-185_S19_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-185_S19_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-187_S20_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-187_S20_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-188_S21_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-188_S21_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-193_S22_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-193_S22_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,519] multiqc [INFO ] Searching 'EPI-194_S23_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-194_S23_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-199_S24_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-199_S24_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-200_S25_L003_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-200_S25_L003_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-205_S26_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-205_S26_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-206_S27_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-206_S27_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-208_S28_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,520] multiqc [INFO ] Searching 'EPI-208_S28_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-209_S29_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-209_S29_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-214_S30_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-214_S30_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-215_S31_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-215_S31_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-220_S32_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-220_S32_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-221_S33_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-221_S33_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,521] multiqc [INFO ] Searching 'EPI-226_S34_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-226_S34_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-227_S35_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-227_S35_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-229_S36_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-229_S36_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-230_S37_L004_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-230_S37_L004_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-41_S38_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-41_S38_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-42_S39_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,522] multiqc [INFO ] Searching 'EPI-42_S39_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,523] multiqc [INFO ] Searching 'EPI-43_S40_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,523] multiqc [INFO ] Searching 'EPI-43_S40_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,523] multiqc [INFO ] Searching 'EPI-44_S41_L005_R1_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,523] multiqc [INFO ] Searching 'EPI-44_S41_L005_R2_001.fastq.gz_trimming_report.txt' [2018-05-17 10:04:04,523] multiqc [INFO ] Searching '.' [2018-05-17 10:04:04,523] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, dedup, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastqc, clusterflow, bcl2fastq, interop [2018-05-17 10:04:04,523] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpeTaZQi [2018-05-17 10:04:04,600] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: ./multiqc_data [2018-05-17 10:04:04,617] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: ./20180514_geoduck_trimmed_fastqc/multiqc_data [2018-05-17 10:05:27,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_val_2.fq.gz [2018-05-17 10:05:27,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1.fq.gz [2018-05-17 10:05:27,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1.fq.gz [2018-05-17 10:05:29,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:31,885] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_val_2.fq.gz [2018-05-17 10:05:31,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:32,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1.fq.gz [2018-05-17 10:05:38,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:39,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1.fq.gz [2018-05-17 10:05:42,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:47,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_val_2.fq.gz [2018-05-17 10:05:47,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_val_2.fq.gz [2018-05-17 10:05:48,074] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_val_2.fq.gz [2018-05-17 10:05:48,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:53,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1.fq.gz [2018-05-17 10:05:53,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_val_2.fq.gz [2018-05-17 10:05:53,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_val_2.fq.gz [2018-05-17 10:05:53,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1.fq.gz [2018-05-17 10:05:53,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_val_2.fq.gz [2018-05-17 10:05:53,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_val_2.fq.gz [2018-05-17 10:05:54,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1.fq.gz [2018-05-17 10:05:54,819] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1.fq.gz [2018-05-17 10:05:54,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_val_2.fq.gz [2018-05-17 10:05:55,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1.fq.gz [2018-05-17 10:05:55,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1.fq.gz [2018-05-17 10:05:55,771] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_val_2.fq.gz [2018-05-17 10:05:55,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_val_2.fq.gz [2018-05-17 10:05:56,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:56,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1.fq.gz [2018-05-17 10:05:56,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_val_2.fq.gz [2018-05-17 10:05:58,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1.fq.gz [2018-05-17 10:05:58,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1.fq.gz [2018-05-17 10:05:58,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_val_2.fq.gz [2018-05-17 10:05:58,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:00,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:00,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:02,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:02,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1.fq.gz [2018-05-17 10:06:02,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:02,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:02,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:02,277] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:02,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1.fq.gz [2018-05-17 10:06:03,805] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:03,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:03,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:03,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:03,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:03,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:03,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:04,566] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:04,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:04,568] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:04,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:04,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1.fq.gz [2018-05-17 10:06:08,805] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:08,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:08,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:09,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:09,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:13,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1.fq.gz [2018-05-17 10:06:13,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:13,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1.fq.gz [2018-05-17 10:06:13,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:13,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1.fq.gz [2018-05-17 10:06:14,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:15,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:16,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:16,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:18,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:18,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:18,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1.fq.gz [2018-05-17 10:06:18,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:19,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:19,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:19,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:20,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:20,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:20,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:21,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:21,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:22,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:22,127] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:22,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1.fq.gz [2018-05-17 10:06:26,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:26,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:31,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:32,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1.fq.gz [2018-05-17 10:06:35,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:35,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1.fq.gz [2018-05-17 10:06:37,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:39,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1.fq.gz [2018-05-17 10:06:40,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1.fq.gz [2018-05-17 10:06:41,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:41,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:45,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:49,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_val_2.fq.gz [2018-05-17 10:06:50,134] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_val_2.fq.gz [2018-05-17 10:06:50,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_val_2.fq.gz [2018-05-17 10:06:52,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_val_2.fq.gz [2018-05-17 10:06:52,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1.fq.gz [2018-05-17 10:06:52,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_val_2.fq.gz [2018-05-17 10:07:03,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_val_2.fq.gz [2018-05-17 10:07:03,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1.fq.gz [2018-05-17 10:07:05,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report_1.html [2018-05-17 10:07:20,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,350] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,386] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,386] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,393] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:20,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:20,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,103] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,144] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,154] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,154] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,161] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,205] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R2_001_val_2_fastqc.html [2018-05-17 10:07:21,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_fastqc.html [2018-05-17 10:07:21,430] multiqc [DEBUG ] No samples found: custom_content [2018-05-17 10:07:21,435] multiqc [DEBUG ] No samples found: conpair [2018-05-17 10:07:21,439] multiqc [DEBUG ] No samples found: peddy [2018-05-17 10:07:21,443] multiqc [DEBUG ] No samples found: methylQA [2018-05-17 10:07:21,447] multiqc [DEBUG ] No samples found: qualimap [2018-05-17 10:07:21,452] multiqc [DEBUG ] No samples found: preseq [2018-05-17 10:07:21,456] multiqc [DEBUG ] No samples found: quast [2018-05-17 10:07:21,460] multiqc [DEBUG ] No samples found: qorts [2018-05-17 10:07:21,464] multiqc [DEBUG ] No samples found: rna_seqc [2018-05-17 10:07:21,468] multiqc [DEBUG ] No samples found: rsem [2018-05-17 10:07:21,473] multiqc [DEBUG ] No samples found: rseqc [2018-05-17 10:07:21,477] multiqc [DEBUG ] No samples found: busco [2018-05-17 10:07:21,482] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-05-17 10:07:21,486] multiqc [DEBUG ] No samples found: disambiguate [2018-05-17 10:07:21,490] multiqc [DEBUG ] No samples found: supernova [2018-05-17 10:07:21,495] multiqc [DEBUG ] No samples found: deeptools [2018-05-17 10:07:21,499] multiqc [DEBUG ] No samples found: sargasso [2018-05-17 10:07:21,503] multiqc [DEBUG ] No samples found: verifybamid [2018-05-17 10:07:21,508] multiqc [DEBUG ] No samples found: homer [2018-05-17 10:07:21,512] multiqc [DEBUG ] No samples found: macs2 [2018-05-17 10:07:21,516] multiqc [DEBUG ] No samples found: theta2 [2018-05-17 10:07:21,520] multiqc [DEBUG ] No samples found: snpeff [2018-05-17 10:07:21,525] multiqc [DEBUG ] No samples found: gatk [2018-05-17 10:07:21,529] multiqc [DEBUG ] No samples found: htseq [2018-05-17 10:07:21,533] multiqc [DEBUG ] No samples found: bcftools [2018-05-17 10:07:21,537] multiqc [DEBUG ] No samples found: featureCounts [2018-05-17 10:07:21,541] multiqc [DEBUG ] No samples found: dedup [2018-05-17 10:07:21,546] multiqc [DEBUG ] No samples found: picard [2018-05-17 10:07:21,550] multiqc [DEBUG ] No samples found: prokka [2018-05-17 10:07:21,554] multiqc [DEBUG ] No samples found: samblaster [2018-05-17 10:07:21,559] multiqc [DEBUG ] No samples found: samtools [2018-05-17 10:07:21,563] multiqc [DEBUG ] No samples found: bamtools [2018-05-17 10:07:21,567] multiqc [DEBUG ] No samples found: jellyfish [2018-05-17 10:07:21,571] multiqc [DEBUG ] No samples found: vcftools [2018-05-17 10:07:21,577] multiqc [DEBUG ] No samples found: bbmap [2018-05-17 10:07:21,581] multiqc [DEBUG ] No samples found: bismark [2018-05-17 10:07:21,585] multiqc [DEBUG ] No samples found: hicexplorer [2018-05-17 10:07:21,589] multiqc [DEBUG ] No samples found: hicup [2018-05-17 10:07:21,593] multiqc [DEBUG ] No samples found: salmon [2018-05-17 10:07:21,597] multiqc [DEBUG ] No samples found: kallisto [2018-05-17 10:07:21,601] multiqc [DEBUG ] No samples found: slamdunk [2018-05-17 10:07:21,605] multiqc [DEBUG ] No samples found: star [2018-05-17 10:07:21,609] multiqc [DEBUG ] No samples found: hisat2 [2018-05-17 10:07:21,613] multiqc [DEBUG ] No samples found: tophat [2018-05-17 10:07:21,617] multiqc [DEBUG ] No samples found: bowtie2 [2018-05-17 10:07:21,622] multiqc [DEBUG ] No samples found: bowtie1 [2018-05-17 10:07:21,626] multiqc [DEBUG ] No samples found: leehom [2018-05-17 10:07:21,630] multiqc [DEBUG ] No samples found: adapterRemoval [2018-05-17 10:07:21,634] multiqc [DEBUG ] No samples found: clipandmerge [2018-05-17 10:07:22,969] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R1_001 [2018-05-17 10:07:22,974] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R1_001 [2018-05-17 10:07:22,980] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R1_001 [2018-05-17 10:07:22,986] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R2_001 [2018-05-17 10:07:22,992] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R2_001 [2018-05-17 10:07:22,997] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R1_001 [2018-05-17 10:07:23,003] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R2_001 [2018-05-17 10:07:23,009] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R1_001 [2018-05-17 10:07:23,015] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R1_001 [2018-05-17 10:07:23,020] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R1_001 [2018-05-17 10:07:23,025] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R2_001 [2018-05-17 10:07:23,030] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R1_001 [2018-05-17 10:07:23,035] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R2_001 [2018-05-17 10:07:23,040] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R2_001 [2018-05-17 10:07:23,046] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R1_001 [2018-05-17 10:07:23,051] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R2_001 [2018-05-17 10:07:23,056] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R1_001 [2018-05-17 10:07:23,061] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R2_001 [2018-05-17 10:07:23,067] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R1_001 [2018-05-17 10:07:23,072] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R1_001 [2018-05-17 10:07:23,078] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R1_001 [2018-05-17 10:07:23,083] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R2_001 [2018-05-17 10:07:23,089] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R1_001 [2018-05-17 10:07:23,094] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R2_001 [2018-05-17 10:07:23,099] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R1_001 [2018-05-17 10:07:23,105] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R2_001 [2018-05-17 10:07:23,110] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R1_001 [2018-05-17 10:07:23,156] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R2_001 [2018-05-17 10:07:23,161] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R1_001 [2018-05-17 10:07:23,167] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R2_001 [2018-05-17 10:07:23,172] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R1_001 [2018-05-17 10:07:23,178] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R2_001 [2018-05-17 10:07:23,183] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R2_001 [2018-05-17 10:07:23,187] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R1_001 [2018-05-17 10:07:23,193] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R2_001 [2018-05-17 10:07:23,199] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R2_001 [2018-05-17 10:07:23,205] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R2_001 [2018-05-17 10:07:23,210] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R1_001 [2018-05-17 10:07:23,215] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R2_001 [2018-05-17 10:07:23,221] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R2_001 [2018-05-17 10:07:23,234] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R1_001 [2018-05-17 10:07:23,239] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R1_001 [2018-05-17 10:07:23,244] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R2_001 [2018-05-17 10:07:23,250] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R2_001 [2018-05-17 10:07:23,255] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R2_001 [2018-05-17 10:07:23,260] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R2_001 [2018-05-17 10:07:23,266] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R1_001 [2018-05-17 10:07:23,271] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R1_001 [2018-05-17 10:07:23,277] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R2_001 [2018-05-17 10:07:23,282] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R2_001 [2018-05-17 10:07:23,288] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R1_001 [2018-05-17 10:07:23,294] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R1_001 [2018-05-17 10:07:23,300] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R2_001 [2018-05-17 10:07:23,312] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R1_001 [2018-05-17 10:07:23,318] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R2_001 [2018-05-17 10:07:23,323] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R1_001 [2018-05-17 10:07:23,329] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R1_001 [2018-05-17 10:07:23,334] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R2_001 [2018-05-17 10:07:23,340] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R1_001 [2018-05-17 10:07:23,346] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R1_001 [2018-05-17 10:07:23,351] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R2_001 [2018-05-17 10:07:23,357] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R1_001 [2018-05-17 10:07:23,363] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R2_001 [2018-05-17 10:07:23,370] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R1_001 [2018-05-17 10:07:23,376] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R1_001 [2018-05-17 10:07:23,382] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R2_001 [2018-05-17 10:07:23,390] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R2_001 [2018-05-17 10:07:23,395] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R2_001 [2018-05-17 10:07:23,401] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R1_001 [2018-05-17 10:07:23,407] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R2_001 [2018-05-17 10:07:23,413] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R1_001 [2018-05-17 10:07:23,418] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R1_001 [2018-05-17 10:07:23,426] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R2_001 [2018-05-17 10:07:23,432] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R1_001 [2018-05-17 10:07:23,433] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R1_001 [2018-05-17 10:07:23,436] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R2_001 [2018-05-17 10:07:23,437] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-103_S27_L005_R2_001 [2018-05-17 10:07:23,441] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R1_001 [2018-05-17 10:07:23,442] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R1_001 [2018-05-17 10:07:23,445] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R2_001 [2018-05-17 10:07:23,446] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-104_S28_L005_R2_001 [2018-05-17 10:07:23,450] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R1_001 [2018-05-17 10:07:23,451] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R1_001 [2018-05-17 10:07:23,454] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R2_001 [2018-05-17 10:07:23,455] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R2_001 [2018-05-17 10:07:23,459] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R1_001 [2018-05-17 10:07:23,460] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R1_001 [2018-05-17 10:07:23,462] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R2_001 [2018-05-17 10:07:23,463] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R2_001 [2018-05-17 10:07:23,468] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R1_001 [2018-05-17 10:07:23,469] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R1_001 [2018-05-17 10:07:23,471] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R2_001 [2018-05-17 10:07:23,472] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R2_001 [2018-05-17 10:07:23,476] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R1_001 [2018-05-17 10:07:23,477] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R1_001 [2018-05-17 10:07:23,480] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R2_001 [2018-05-17 10:07:23,481] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-120_S32_L005_R2_001 [2018-05-17 10:07:23,485] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R1_001 [2018-05-17 10:07:23,486] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R1_001 [2018-05-17 10:07:23,489] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R2_001 [2018-05-17 10:07:23,490] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R2_001 [2018-05-17 10:07:23,494] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R1_001 [2018-05-17 10:07:23,495] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R1_001 [2018-05-17 10:07:23,497] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R2_001 [2018-05-17 10:07:23,499] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R2_001 [2018-05-17 10:07:23,503] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R1_001 [2018-05-17 10:07:23,504] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R1_001 [2018-05-17 10:07:23,506] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R2_001 [2018-05-17 10:07:23,507] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R2_001 [2018-05-17 10:07:23,511] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R1_001 [2018-05-17 10:07:23,512] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R1_001 [2018-05-17 10:07:23,515] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R2_001 [2018-05-17 10:07:23,516] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R2_001 [2018-05-17 10:07:23,520] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R1_001 [2018-05-17 10:07:23,521] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R1_001 [2018-05-17 10:07:23,524] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R2_001 [2018-05-17 10:07:23,525] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R2_001 [2018-05-17 10:07:23,529] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R1_001 [2018-05-17 10:07:23,530] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R1_001 [2018-05-17 10:07:23,532] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R2_001 [2018-05-17 10:07:23,533] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-145_S38_L005_R2_001 [2018-05-17 10:07:23,538] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R1_001 [2018-05-17 10:07:23,539] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R1_001 [2018-05-17 10:07:23,541] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R2_001 [2018-05-17 10:07:23,542] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-151_S2_L002_R2_001 [2018-05-17 10:07:23,546] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R1_001 [2018-05-17 10:07:23,547] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R1_001 [2018-05-17 10:07:23,550] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R2_001 [2018-05-17 10:07:23,551] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R2_001 [2018-05-17 10:07:23,555] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R1_001 [2018-05-17 10:07:23,556] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R1_001 [2018-05-17 10:07:23,559] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R2_001 [2018-05-17 10:07:23,560] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R2_001 [2018-05-17 10:07:23,564] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R1_001 [2018-05-17 10:07:23,565] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R1_001 [2018-05-17 10:07:23,568] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R2_001 [2018-05-17 10:07:23,569] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R2_001 [2018-05-17 10:07:23,573] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R1_001 [2018-05-17 10:07:23,574] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R1_001 [2018-05-17 10:07:23,576] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R2_001 [2018-05-17 10:07:23,577] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-159_S6_L002_R2_001 [2018-05-17 10:07:23,581] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R1_001 [2018-05-17 10:07:23,583] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R1_001 [2018-05-17 10:07:23,585] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R2_001 [2018-05-17 10:07:23,586] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-160_S7_L002_R2_001 [2018-05-17 10:07:23,590] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R1_001 [2018-05-17 10:07:23,591] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R1_001 [2018-05-17 10:07:23,594] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R2_001 [2018-05-17 10:07:23,595] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-161_S8_L002_R2_001 [2018-05-17 10:07:23,599] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R1_001 [2018-05-17 10:07:23,600] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R1_001 [2018-05-17 10:07:23,603] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R2_001 [2018-05-17 10:07:23,604] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-162_S9_L002_R2_001 [2018-05-17 10:07:23,608] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R1_001 [2018-05-17 10:07:23,609] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R1_001 [2018-05-17 10:07:23,611] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R2_001 [2018-05-17 10:07:23,613] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-167_S10_L002_R2_001 [2018-05-17 10:07:23,617] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R1_001 [2018-05-17 10:07:23,618] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R1_001 [2018-05-17 10:07:23,620] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R2_001 [2018-05-17 10:07:23,621] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-168_S11_L002_R2_001 [2018-05-17 10:07:23,625] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R1_001 [2018-05-17 10:07:23,626] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R1_001 [2018-05-17 10:07:23,629] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R2_001 [2018-05-17 10:07:23,630] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R2_001 [2018-05-17 10:07:23,634] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R1_001 [2018-05-17 10:07:23,635] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R1_001 [2018-05-17 10:07:23,638] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R2_001 [2018-05-17 10:07:23,639] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-170_S13_L002_R2_001 [2018-05-17 10:07:23,643] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R1_001 [2018-05-17 10:07:23,644] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R1_001 [2018-05-17 10:07:23,646] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R2_001 [2018-05-17 10:07:23,648] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R2_001 [2018-05-17 10:07:23,652] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R1_001 [2018-05-17 10:07:23,653] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R1_001 [2018-05-17 10:07:23,655] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R2_001 [2018-05-17 10:07:23,656] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R2_001 [2018-05-17 10:07:23,660] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R1_001 [2018-05-17 10:07:23,661] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R1_001 [2018-05-17 10:07:23,664] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R2_001 [2018-05-17 10:07:23,665] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R2_001 [2018-05-17 10:07:23,669] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R1_001 [2018-05-17 10:07:23,670] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R1_001 [2018-05-17 10:07:23,673] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R2_001 [2018-05-17 10:07:23,674] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-182_S17_L003_R2_001 [2018-05-17 10:07:23,678] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R1_001 [2018-05-17 10:07:23,679] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R1_001 [2018-05-17 10:07:23,682] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R2_001 [2018-05-17 10:07:23,683] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-184_S18_L003_R2_001 [2018-05-17 10:07:23,687] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R1_001 [2018-05-17 10:07:23,688] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R1_001 [2018-05-17 10:07:23,690] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R2_001 [2018-05-17 10:07:23,691] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R2_001 [2018-05-17 10:07:23,695] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R1_001 [2018-05-17 10:07:23,696] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R1_001 [2018-05-17 10:07:23,699] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R2_001 [2018-05-17 10:07:23,700] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R2_001 [2018-05-17 10:07:23,704] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R1_001 [2018-05-17 10:07:23,705] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R1_001 [2018-05-17 10:07:23,708] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R2_001 [2018-05-17 10:07:23,709] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R2_001 [2018-05-17 10:07:23,713] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R1_001 [2018-05-17 10:07:23,714] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R1_001 [2018-05-17 10:07:23,717] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R2_001 [2018-05-17 10:07:23,718] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R2_001 [2018-05-17 10:07:23,722] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R1_001 [2018-05-17 10:07:23,723] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R1_001 [2018-05-17 10:07:23,726] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R2_001 [2018-05-17 10:07:23,727] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R2_001 [2018-05-17 10:07:23,731] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R1_001 [2018-05-17 10:07:23,732] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R1_001 [2018-05-17 10:07:23,735] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R2_001 [2018-05-17 10:07:23,736] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R2_001 [2018-05-17 10:07:23,740] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R1_001 [2018-05-17 10:07:23,741] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R1_001 [2018-05-17 10:07:23,744] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R2_001 [2018-05-17 10:07:23,745] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-200_S25_L003_R2_001 [2018-05-17 10:07:23,749] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R1_001 [2018-05-17 10:07:23,750] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R1_001 [2018-05-17 10:07:23,752] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R2_001 [2018-05-17 10:07:23,753] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-205_S26_L004_R2_001 [2018-05-17 10:07:23,757] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R1_001 [2018-05-17 10:07:23,759] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R1_001 [2018-05-17 10:07:23,761] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R2_001 [2018-05-17 10:07:23,762] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R2_001 [2018-05-17 10:07:23,766] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R1_001 [2018-05-17 10:07:23,767] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R1_001 [2018-05-17 10:07:23,770] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R2_001 [2018-05-17 10:07:23,771] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R2_001 [2018-05-17 10:07:23,775] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R1_001 [2018-05-17 10:07:23,776] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R1_001 [2018-05-17 10:07:23,779] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R2_001 [2018-05-17 10:07:23,780] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R2_001 [2018-05-17 10:07:23,784] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R1_001 [2018-05-17 10:07:23,785] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R1_001 [2018-05-17 10:07:23,788] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R2_001 [2018-05-17 10:07:23,789] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R2_001 [2018-05-17 10:07:23,793] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R1_001 [2018-05-17 10:07:23,794] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R1_001 [2018-05-17 10:07:23,797] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R2_001 [2018-05-17 10:07:23,798] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-215_S31_L004_R2_001 [2018-05-17 10:07:23,802] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R1_001 [2018-05-17 10:07:23,803] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R1_001 [2018-05-17 10:07:23,805] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R2_001 [2018-05-17 10:07:23,806] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R2_001 [2018-05-17 10:07:23,810] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R1_001 [2018-05-17 10:07:23,811] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R1_001 [2018-05-17 10:07:23,814] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R2_001 [2018-05-17 10:07:23,815] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R2_001 [2018-05-17 10:07:23,819] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R1_001 [2018-05-17 10:07:23,820] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R1_001 [2018-05-17 10:07:23,823] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R2_001 [2018-05-17 10:07:23,824] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-226_S34_L004_R2_001 [2018-05-17 10:07:23,828] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R1_001 [2018-05-17 10:07:23,829] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R1_001 [2018-05-17 10:07:23,831] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R2_001 [2018-05-17 10:07:23,832] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R2_001 [2018-05-17 10:07:23,836] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R1_001 [2018-05-17 10:07:23,838] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R1_001 [2018-05-17 10:07:23,840] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R2_001 [2018-05-17 10:07:23,841] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-229_S36_L004_R2_001 [2018-05-17 10:07:23,845] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R1_001 [2018-05-17 10:07:23,846] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R1_001 [2018-05-17 10:07:23,849] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R2_001 [2018-05-17 10:07:23,850] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-230_S37_L004_R2_001 [2018-05-17 10:07:23,854] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R1_001 [2018-05-17 10:07:23,855] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R1_001 [2018-05-17 10:07:23,858] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R2_001 [2018-05-17 10:07:23,859] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-41_S38_L005_R2_001 [2018-05-17 10:07:23,863] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R1_001 [2018-05-17 10:07:23,864] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R1_001 [2018-05-17 10:07:23,867] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R2_001 [2018-05-17 10:07:23,868] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-42_S39_L005_R2_001 [2018-05-17 10:07:23,872] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R1_001 [2018-05-17 10:07:23,873] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R1_001 [2018-05-17 10:07:23,875] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R2_001 [2018-05-17 10:07:23,877] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-43_S40_L005_R2_001 [2018-05-17 10:07:23,880] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R1_001 [2018-05-17 10:07:23,882] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R1_001 [2018-05-17 10:07:23,884] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R2_001 [2018-05-17 10:07:23,885] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-44_S41_L005_R2_001 [2018-05-17 10:07:23,892] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-209_S29_L004_R1_001 [2018-05-17 10:07:23,898] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-176_S15_L003_R2_001 [2018-05-17 10:07:23,903] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R2_001 [2018-05-17 10:07:23,909] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-193_S22_L003_R2_001 [2018-05-17 10:07:23,915] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-188_S21_L003_R2_001 [2018-05-17 10:07:23,920] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-208_S28_L004_R1_001 [2018-05-17 10:07:23,926] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-136_S36_L005_R2_001 [2018-05-17 10:07:23,938] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-119_S31_L005_R1_001 [2018-05-17 10:07:23,944] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-113_S30_L005_R1_001 [2018-05-17 10:07:23,950] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-227_S35_L004_R1_001 [2018-05-17 10:07:23,955] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-135_S35_L005_R2_001 [2018-05-17 10:07:23,961] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-199_S24_L003_R2_001 [2018-05-17 10:07:23,967] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-127_S33_L005_R2_001 [2018-05-17 10:07:23,972] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-194_S23_L003_R1_001 [2018-05-17 10:07:23,978] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R1_001 [2018-05-17 10:07:23,984] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-214_S30_L004_R1_001 [2018-05-17 10:07:23,989] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-220_S32_L004_R1_001 [2018-05-17 10:07:23,995] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-152_S3_L002_R2_001 [2018-05-17 10:07:24,001] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R1_001 [2018-05-17 10:07:24,006] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-181_S16_L003_R2_001 [2018-05-17 10:07:24,604] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-153_S4_L002_R2_001 [2018-05-17 10:07:24,610] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-187_S20_L003_R1_001 [2018-05-17 10:07:24,616] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-143_S37_L005_R2_001 [2018-05-17 10:07:24,621] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-154_S5_L002_R1_001 [2018-05-17 10:07:24,627] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-206_S27_L004_R1_001 [2018-05-17 10:07:24,633] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-175_S14_L003_R2_001 [2018-05-17 10:07:24,638] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-128_S34_L005_R1_001 [2018-05-17 10:07:24,643] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-185_S19_L003_R2_001 [2018-05-17 10:07:24,649] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-111_S29_L005_R2_001 [2018-05-17 10:07:24,654] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-169_S12_L002_R1_001 [2018-05-17 10:07:24,660] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: EPI-221_S33_L004_R2_001 [2018-05-17 10:07:24,663] multiqc.modules.cutadapt.cutadapt [INFO ] Found 104 reports [2018-05-17 10:07:26,109] multiqc [DEBUG ] No samples found: flexbar [2018-05-17 10:07:26,113] multiqc [DEBUG ] No samples found: trimmomatic [2018-05-17 10:07:26,117] multiqc [DEBUG ] No samples found: skewer [2018-05-17 10:07:26,121] multiqc [DEBUG ] No samples found: sortmerna [2018-05-17 10:07:26,126] multiqc [DEBUG ] No samples found: biobloomtools [2018-05-17 10:07:26,130] multiqc [DEBUG ] No samples found: fastq_screen [2018-05-17 10:07:26,135] multiqc [DEBUG ] No samples found: afterqc [2018-05-17 10:07:52,328] multiqc.modules.fastqc.fastqc [INFO ] Found 104 reports [2018-05-17 10:08:01,903] multiqc [DEBUG ] No samples found: clusterflow [2018-05-17 10:08:01,907] multiqc [DEBUG ] No samples found: bcl2fastq [2018-05-17 10:08:01,912] multiqc [DEBUG ] No samples found: interop [2018-05-17 10:08:02,122] multiqc [INFO ] Compressing plot data [2018-05-17 10:08:02,211] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2018-05-17 10:08:02,211] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2018-05-17 10:08:02,211] multiqc [INFO ] Report : multiqc_report_2.html [2018-05-17 10:08:02,211] multiqc [INFO ] Data : multiqc_data_2 [2018-05-17 10:08:02,380] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,413] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/multiqc_cutadapt.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,420] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,428] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/multiqc_general_stats.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,435] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_cutadapt_plot_Obs_Exp.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,443] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/multiqc_fastqc.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,451] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/multiqc_sources.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,458] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_cutadapt_plot_Counts.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,466] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,474] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,481] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/multiqc_data.json' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,491] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,500] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,599] multiqc [DEBUG ] Moving data file from '/tmp/tmpeTaZQi/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/mnt/owl/Athaliana/20180514_geoduck_trimgalore_rrbs/multiqc_data_2' [2018-05-17 10:08:02,856] multiqc [INFO ] MultiQC complete