FastQCFastQC Report
Thu 17 May 2018
EPI-200_S25_L003_R2_001_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameEPI-200_S25_L003_R2_001_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25100695
Sequences flagged as poor quality0
Sequence length20-99
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAACACAACAACACACACCAAACAACAATCTATAAACTATTTAAAACAA271900.1083236938260076No Hit
TACATAAACCACAATCAAAAACTAAATATCACTAAACAAACCAAAAAATA260510.10378597086654374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)