[2018-05-18 08:34:42,036] multiqc [DEBUG ] No MultiQC config found: /home/shared/anaconda3/lib/python3.6/site-packages/multiqc-1.5.dev0-py3.6.egg/multiqc_config.yaml [2018-05-18 08:34:42,036] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2018-05-18 08:34:42,036] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-05-18 08:34:42,037] multiqc [DEBUG ] Command used: /home/shared/anaconda3/bin/multiqc . [2018-05-18 08:34:43,392] multiqc [DEBUG ] Latest MultiQC version is v1.5 [2018-05-18 08:34:43,392] multiqc [INFO ] This is MultiQC v1.5.dev0 [2018-05-18 08:34:43,393] multiqc [DEBUG ] Command : /home/shared/anaconda3/bin/multiqc . [2018-05-18 08:34:43,393] multiqc [DEBUG ] Working dir : /home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc [2018-05-18 08:34:43,393] multiqc [INFO ] Template : default [2018-05-18 08:34:43,393] multiqc [INFO ] Searching '.' [2018-05-18 08:34:43,394] multiqc [DEBUG ] Analysing modules: afterqc, custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, fastqc, clusterflow, bcl2fastq, interop [2018-05-18 08:34:43,394] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpi88lvcuy [2018-05-18 08:34:43,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,495] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,495] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,495] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,500] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,515] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,515] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:43,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_val_1_fastqc.html [2018-05-18 08:34:43,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_val_2_fastqc.html [2018-05-18 08:34:44,478] multiqc [DEBUG ] No samples found: afterqc [2018-05-18 08:34:44,546] multiqc [DEBUG ] No samples found: custom_content [2018-05-18 08:34:44,565] multiqc [DEBUG ] No samples found: conpair [2018-05-18 08:34:44,584] multiqc [DEBUG ] No samples found: peddy [2018-05-18 08:34:44,597] multiqc [DEBUG ] No samples found: methylQA [2018-05-18 08:34:44,617] multiqc [DEBUG ] No samples found: qualimap [2018-05-18 08:34:44,638] multiqc [DEBUG ] No samples found: preseq [2018-05-18 08:34:44,645] multiqc [DEBUG ] No samples found: quast [2018-05-18 08:34:44,651] multiqc [DEBUG ] No samples found: qorts [2018-05-18 08:34:44,656] multiqc [DEBUG ] No samples found: rna_seqc [2018-05-18 08:34:44,662] multiqc [DEBUG ] No samples found: rsem [2018-05-18 08:34:44,673] multiqc [DEBUG ] No samples found: rseqc [2018-05-18 08:34:44,691] multiqc [DEBUG ] No samples found: busco [2018-05-18 08:34:44,709] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-05-18 08:34:44,738] multiqc [DEBUG ] No samples found: disambiguate [2018-05-18 08:34:44,756] multiqc [DEBUG ] No samples found: supernova [2018-05-18 08:34:44,782] multiqc [DEBUG ] No samples found: deeptools [2018-05-18 08:34:44,798] multiqc [DEBUG ] No samples found: sargasso [2018-05-18 08:34:44,812] multiqc [DEBUG ] No samples found: verifybamid [2018-05-18 08:34:44,846] multiqc [DEBUG ] No samples found: homer [2018-05-18 08:34:44,864] multiqc [DEBUG ] No samples found: macs2 [2018-05-18 08:34:44,869] multiqc [DEBUG ] No samples found: theta2 [2018-05-18 08:34:44,893] multiqc [DEBUG ] No samples found: snpeff [2018-05-18 08:34:44,916] multiqc [DEBUG ] No samples found: gatk [2018-05-18 08:34:44,933] multiqc [DEBUG ] No samples found: htseq [2018-05-18 08:34:44,957] multiqc [DEBUG ] No samples found: bcftools [2018-05-18 08:34:44,979] multiqc [DEBUG ] No samples found: featureCounts [2018-05-18 08:34:45,018] multiqc [DEBUG ] No samples found: picard [2018-05-18 08:34:45,023] multiqc [DEBUG ] No samples found: prokka [2018-05-18 08:34:45,048] multiqc [DEBUG ] No samples found: samblaster [2018-05-18 08:34:45,056] multiqc [DEBUG ] No samples found: samtools [2018-05-18 08:34:45,078] multiqc [DEBUG ] No samples found: bamtools [2018-05-18 08:34:45,084] multiqc [DEBUG ] No samples found: jellyfish [2018-05-18 08:34:45,106] multiqc [DEBUG ] No samples found: vcftools [2018-05-18 08:34:45,138] multiqc [DEBUG ] No samples found: bbmap [2018-05-18 08:34:45,158] multiqc [DEBUG ] No samples found: bismark [2018-05-18 08:34:45,179] multiqc [DEBUG ] No samples found: hicexplorer [2018-05-18 08:34:45,195] multiqc [DEBUG ] No samples found: hicup [2018-05-18 08:34:45,201] multiqc [DEBUG ] No samples found: salmon [2018-05-18 08:34:45,207] multiqc [DEBUG ] No samples found: kallisto [2018-05-18 08:34:45,227] multiqc [DEBUG ] No samples found: slamdunk [2018-05-18 08:34:45,232] multiqc [DEBUG ] No samples found: star [2018-05-18 08:34:45,258] multiqc [DEBUG ] No samples found: hisat2 [2018-05-18 08:34:45,281] multiqc [DEBUG ] No samples found: tophat [2018-05-18 08:34:45,305] multiqc [DEBUG ] No samples found: bowtie2 [2018-05-18 08:34:45,324] multiqc [DEBUG ] No samples found: bowtie1 [2018-05-18 08:34:45,339] multiqc [DEBUG ] No samples found: leehom [2018-05-18 08:34:45,360] multiqc [DEBUG ] No samples found: adapterRemoval [2018-05-18 08:34:45,381] multiqc [DEBUG ] No samples found: cutadapt [2018-05-18 08:34:45,405] multiqc [DEBUG ] No samples found: flexbar [2018-05-18 08:34:45,411] multiqc [DEBUG ] No samples found: trimmomatic [2018-05-18 08:34:45,416] multiqc [DEBUG ] No samples found: skewer [2018-05-18 08:34:45,421] multiqc [DEBUG ] No samples found: sortmerna [2018-05-18 08:34:45,435] multiqc [DEBUG ] No samples found: biobloomtools [2018-05-18 08:34:45,452] multiqc [DEBUG ] No samples found: fastq_screen [2018-05-18 08:34:50,581] multiqc.modules.fastqc.fastqc [INFO ] Found 104 reports [2018-05-18 08:34:58,258] multiqc [DEBUG ] No samples found: clusterflow [2018-05-18 08:34:58,272] multiqc [DEBUG ] No samples found: bcl2fastq [2018-05-18 08:34:58,294] multiqc [DEBUG ] No samples found: interop [2018-05-18 08:34:58,498] multiqc [INFO ] Compressing plot data [2018-05-18 08:34:58,514] multiqc [INFO ] Report : multiqc_report.html [2018-05-18 08:34:58,515] multiqc [INFO ] Data : multiqc_data [2018-05-18 08:34:58,515] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,515] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/multiqc_general_stats.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,515] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,515] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/multiqc_fastqc.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,515] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,516] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,516] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,516] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/multiqc_data.json' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,516] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/multiqc_sources.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,516] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,516] multiqc [DEBUG ] Moving data file from '/tmp/tmpi88lvcuy/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/home/sam/data/geoduck_EPI/20180516_geoduck_trimgalore_rrbs/20180516_geoduck_trimmed_fastqc/multiqc_data' [2018-05-18 08:34:58,827] multiqc [INFO ] MultiQC complete