================================================== file name: jelly.out.fasta sequences: 696946 total length: 1253001795 bp (1172226648 bp excl N/X-runs) GC level: 36.51 % bases masked: 17617763 bp ( 1.50 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- Retroelements 0 0 bp 0.00 % SINEs: 0 0 bp 0.00 % Penelope 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % CRE/SLACS 0 0 bp 0.00 % L2/CR1/Rex 0 0 bp 0.00 % R1/LOA/Jockey 0 0 bp 0.00 % R2/R4/NeSL 0 0 bp 0.00 % RTE/Bov-B 0 0 bp 0.00 % L1/CIN4 0 0 bp 0.00 % LTR elements: 0 0 bp 0.00 % BEL/Pao 0 0 bp 0.00 % Ty1/Copia 0 0 bp 0.00 % Gypsy/DIRS1 0 0 bp 0.00 % Retroviral 0 0 bp 0.00 % DNA transposons 0 0 bp 0.00 % hobo-Activator 0 0 bp 0.00 % Tc1-IS630-Pogo 0 0 bp 0.00 % En-Spm 0 0 bp 0.00 % MuDR-IS905 0 0 bp 0.00 % PiggyBac 0 0 bp 0.00 % Tourist/Harbinger 0 0 bp 0.00 % Other (Mirage, 0 0 bp 0.00 % P-element, Transib) Rolling-circles 0 0 bp 0.00 % Unclassified: 3 189 bp 0.00 % Total interspersed repeats: 189 bp 0.00 % Small RNA: 282 79165 bp 0.01 % Satellites: 10 5985 bp 0.00 % Simple repeats: 313082 14662647 bp 1.25 % Low complexity: 47785 2878201 bp 0.25 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be ostrea lurida RepeatMasker Combined Database: Dfam_Consensus-20170127, RepBase-20170127 run with rmblastn version 2.6.0+