Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam:	398541
Total number duplicated alignments removed:	12455 (3.13%)
Duplicated alignments were found at:	9062 different position(s)

Total count of deduplicated leftover sequences: 386086 (96.87% of total)