Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam:	401184
Total number duplicated alignments removed:	15498 (3.86%)
Duplicated alignments were found at:	9462 different position(s)

Total count of deduplicated leftover sequences: 385686 (96.14% of total)