Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam: 402878 Total number duplicated alignments removed: 12403 (3.08%) Duplicated alignments were found at: 9571 different position(s) Total count of deduplicated leftover sequences: 390475 (96.92% of total)