Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam: 398539 Total number duplicated alignments removed: 13674 (3.43%) Duplicated alignments were found at: 9449 different position(s) Total count of deduplicated leftover sequences: 384865 (96.57% of total)