Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam:	398539
Total number duplicated alignments removed:	13674 (3.43%)
Duplicated alignments were found at:	9449 different position(s)

Total count of deduplicated leftover sequences: 384865 (96.57% of total)