Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam:	398470
Total number duplicated alignments removed:	10607 (2.66%)
Duplicated alignments were found at:	8442 different position(s)

Total count of deduplicated leftover sequences: 387863 (97.34% of total)