Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam:	395985
Total number duplicated alignments removed:	11116 (2.81%)
Duplicated alignments were found at:	8286 different position(s)

Total count of deduplicated leftover sequences: 384869 (97.19% of total)