owl/Athaliana/20180531_oly_bismark_deduplication Continuation of BS-seq analysis of a subset of O.lurida data. This directory contains files generated by running deduplicate_bismark, followed by sammtools sort. FILES: - 20180531_dedup_stdout.txt : Text file containing standard output of Bismark deduplication. - 20180531_dedup_stederr.txt : Text file containing standard error of Bismark dedupliation. - 20180531_samtools_stderr.txt : Text file containging standard error samtools sort. - *dedup.sorted.bam : Deduplicated, sorted BAM files. - *.deduplicated.bam : Deduplicated BAM files. - *.deduplication_report.txt : Deduplication summary reports. Notebook entry: http://onsnetwork.org/kubu4/2018/05/30/bs-seq-mapping-olympia-oyster-bisulfite-sequencing-bismark-continued ----------------------- First part of analysis: http://owl.fish.washington.edu/Athaliana/20180507_oly_methylseq_bismark/ First part of analysis notebook entry: http://onsnetwork.org/kubu4/2018/05/08/bs-seq-mapping-olympia-oyster-bisulfite-sequencing-trimgalore-fastqc-bismark/