Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/zr1394_12_s456_trimmed_bismark_bt2.bam:	357770
Total number duplicated alignments removed:	9891 (2.76%)
Duplicated alignments were found at:	7518 different position(s)

Total count of deduplicated leftover sequences: 347879 (97.24% of total)