Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/zr1394_18_s456_trimmed_bismark_bt2.bam:	348298
Total number duplicated alignments removed:	11400 (3.27%)
Duplicated alignments were found at:	8398 different position(s)

Total count of deduplicated leftover sequences: 336898 (96.73% of total)