Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/zr1394_2_s456_trimmed_bismark_bt2.bam:	340656
Total number duplicated alignments removed:	10294 (3.02%)
Duplicated alignments were found at:	7716 different position(s)

Total count of deduplicated leftover sequences: 330362 (96.98% of total)