Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/zr1394_5_s456_trimmed_bismark_bt2.bam:	351188
Total number duplicated alignments removed:	8184 (2.33%)
Duplicated alignments were found at:	6214 different position(s)

Total count of deduplicated leftover sequences: 343004 (97.67% of total)