Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/zr1394_9_s456_trimmed_bismark_bt2.bam:	345938
Total number duplicated alignments removed:	9557 (2.76%)
Duplicated alignments were found at:	7288 different position(s)

Total count of deduplicated leftover sequences: 336381 (97.24% of total)