5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 4183771 lines in total Total number of methylation call strings processed: 4183771 Final Cytosine Methylation Report ================================= Total number of C's analysed: 23636238 Total methylated C's in CpG context: 888785 Total methylated C's in CHG context: 69679 Total methylated C's in CHH context: 1224859 Total C to T conversions in CpG context: 2289596 Total C to T conversions in CHG context: 4274461 Total C to T conversions in CHH context: 14888858 C methylated in CpG context: 28.0% C methylated in CHG context: 1.6% C methylated in CHH context: 7.6%