File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated CpHs	Unmethylated CpHs	Methylated CHHs	Unmethylated CHHs
1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam	9246318	3662558	1217825	4358543	7392	401216	3261342	18418940	711829	1765366	51116	3330611	941472	11618546
2_CGATGT_L001_R1_001_trimmed_bismark_bt2.bam	11654467	4572578	1541276	5531435	9178	553860	4018718	22700735	857067	2181742	96044	4052616	1264268	14248998
3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.bam	11555321	4549927	1568078	5428395	8921	576435	3973492	22418499	864057	2143790	58013	4055876	1131000	14165763
4_TGACCA_L001_R1_001_trimmed_bismark_bt2.bam	11408856	4527463	1477731	5394965	8697	515221	4012242	22548787	885408	2132942	57876	4060404	1134467	14277690
5_ACAGTG_L001_R1_001_trimmed_bismark_bt2.bam	12231319	4788889	1651146	5781653	9631	605118	4183771	23636238	888785	2289596	69679	4274461	1224859	14888858
6_GCCAAT_L001_R1_001_trimmed_bismark_bt2.bam	12175584	4734709	1704908	5726339	9628	573306	4161403	23480080	856232	2288185	84715	4200647	1318449	14731852
7_CAGATC_L001_R1_001_trimmed_bismark_bt2.bam	10113854	3976894	1329633	4799454	7873	403813	3573081	20116328	747346	1948285	49389	3629427	1010916	12730965
8_ACTTGA_L001_R1_001_trimmed_bismark_bt2.bam	13949213	5438263	1876942	6622932	11076	692232	4746031	26831960	930960	2680491	76720	4844288	1361218	16938283
zr1394_10_s456_trimmed_bismark_bt2.bam	78221457	26440742	19431424	32285804	63487	17149949	9290793	56744251	7001331	1610356	290718	10834457	4127690	32879699
zr1394_11_s456_trimmed_bismark_bt2.bam	54458572	16280360	15053965	23084041	40206	7765728	8514632	52745371	7496104	1672681	284680	9692391	3508788	30090727
zr1394_12_s456_trimmed_bismark_bt2.bam	59459431	20852667	15643544	22925333	37887	6676630	14176037	83579208	8817849	2417237	332971	16093330	5082422	50835399
zr1394_13_s456_trimmed_bismark_bt2.bam	64352550	20464081	16899806	26943572	45091	8773542	11690539	71524361	9602566	1879545	343395	13603952	4469957	41624946
zr1394_14_s456_trimmed_bismark_bt2.bam	87834637	26512507	24154445	37111009	56676	11489262	15023245	91128263	11844607	2469156	442638	16305886	5799842	54266134
zr1394_15_s456_trimmed_bismark_bt2.bam	67984205	20793846	18691846	28451956	46557	9547917	11245929	69372444	9956430	1720443	365258	13018203	4559022	39753088
zr1394_16_s456_trimmed_bismark_bt2.bam	74531056	22191399	20848664	31438528	52465	9778157	12413242	76091693	10560955	2162406	387693	13862536	4989670	44128433
zr1394_17_s456_trimmed_bismark_bt2.bam	42070546	13373055	11125453	17543071	28967	5209577	8163478	49945483	7022752	1231609	249647	9955503	3189408	28296564
zr1394_18_s456_trimmed_bismark_bt2.bam	55048106	18831950	14051321	22127687	37148	6252025	12579925	74777179	8630550	1943000	313258	14709809	4368376	44812186
zr1394_1_s456_trimmed_bismark_bt2.bam	46792286	15141400	12808090	18811670	31126	4480374	10661026	63766237	7639492	1844078	303268	12172751	3843218	37963430
zr1394_2_s456_trimmed_bismark_bt2.bam	46105140	15412092	12775552	17888173	29323	4686184	10725908	63871790	7486629	1699430	297475	12401334	3960155	38026767
zr1394_3_s456_trimmed_bismark_bt2.bam	48376729	15387182	13562727	19394676	32144	4468769	10918413	64869693	7482953	1764271	298257	12085494	3975661	39263057
zr1394_4_s456_trimmed_bismark_bt2.bam	44905078	14451278	12422799	18001138	29863	4498133	9953145	59900779	7516564	1356230	292784	11524663	3643159	35567379
zr1394_5_s456_trimmed_bismark_bt2.bam	47401736	16372339	12742540	18256765	30092	4080089	12292250	71751999	7066746	2460275	307446	13930216	4433156	43554160
zr1394_6_s456_trimmed_bismark_bt2.bam	46455148	16168840	12629511	17627828	28969	3828258	12340582	71229852	6643663	1870268	308396	13553335	4254229	44599961
zr1394_7_s456_trimmed_bismark_bt2.bam	49730113	16017969	13690949	19988660	32535	4832407	11185562	67296159	8280867	1816175	320066	12931899	4022598	39924554
zr1394_8_s456_trimmed_bismark_bt2.bam	38697189	12549888	10453397	15668737	25167	3674487	8875401	53598027	6996767	1160532	247134	10373161	3143493	31676940
zr1394_9_s456_trimmed_bismark_bt2.bam	77350922	26296063	19712667	31292909	49283	8969760	17326303	101202142	10096631	2793392	405216	18757453	6066529	63082921