zr1394_12_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 14176037 lines in total Total number of methylation call strings processed: 14176037 Final Cytosine Methylation Report ================================= Total number of C's analysed: 83579208 Total methylated C's in CpG context: 8817849 Total methylated C's in CHG context: 332971 Total methylated C's in CHH context: 5082422 Total C to T conversions in CpG context: 2417237 Total C to T conversions in CHG context: 16093330 Total C to T conversions in CHH context: 50835399 C methylated in CpG context: 78.5% C methylated in CHG context: 2.0% C methylated in CHH context: 9.1%