zr1394_13_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11690539 lines in total Total number of methylation call strings processed: 11690539 Final Cytosine Methylation Report ================================= Total number of C's analysed: 71524361 Total methylated C's in CpG context: 9602566 Total methylated C's in CHG context: 343395 Total methylated C's in CHH context: 4469957 Total C to T conversions in CpG context: 1879545 Total C to T conversions in CHG context: 13603952 Total C to T conversions in CHH context: 41624946 C methylated in CpG context: 83.6% C methylated in CHG context: 2.5% C methylated in CHH context: 9.7%