zr1394_14_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 15023245 lines in total Total number of methylation call strings processed: 15023245 Final Cytosine Methylation Report ================================= Total number of C's analysed: 91128263 Total methylated C's in CpG context: 11844607 Total methylated C's in CHG context: 442638 Total methylated C's in CHH context: 5799842 Total C to T conversions in CpG context: 2469156 Total C to T conversions in CHG context: 16305886 Total C to T conversions in CHH context: 54266134 C methylated in CpG context: 82.7% C methylated in CHG context: 2.6% C methylated in CHH context: 9.7%