zr1394_17_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 8163478 lines in total Total number of methylation call strings processed: 8163478 Final Cytosine Methylation Report ================================= Total number of C's analysed: 49945483 Total methylated C's in CpG context: 7022752 Total methylated C's in CHG context: 249647 Total methylated C's in CHH context: 3189408 Total C to T conversions in CpG context: 1231609 Total C to T conversions in CHG context: 9955503 Total C to T conversions in CHH context: 28296564 C methylated in CpG context: 85.1% C methylated in CHG context: 2.4% C methylated in CHH context: 10.1%