zr1394_1_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10661026 lines in total Total number of methylation call strings processed: 10661026 Final Cytosine Methylation Report ================================= Total number of C's analysed: 63766237 Total methylated C's in CpG context: 7639492 Total methylated C's in CHG context: 303268 Total methylated C's in CHH context: 3843218 Total C to T conversions in CpG context: 1844078 Total C to T conversions in CHG context: 12172751 Total C to T conversions in CHH context: 37963430 C methylated in CpG context: 80.6% C methylated in CHG context: 2.4% C methylated in CHH context: 9.2%