zr1394_2_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10725908 lines in total Total number of methylation call strings processed: 10725908 Final Cytosine Methylation Report ================================= Total number of C's analysed: 63871790 Total methylated C's in CpG context: 7486629 Total methylated C's in CHG context: 297475 Total methylated C's in CHH context: 3960155 Total C to T conversions in CpG context: 1699430 Total C to T conversions in CHG context: 12401334 Total C to T conversions in CHH context: 38026767 C methylated in CpG context: 81.5% C methylated in CHG context: 2.3% C methylated in CHH context: 9.4%