zr1394_5_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 12292250 lines in total Total number of methylation call strings processed: 12292250 Final Cytosine Methylation Report ================================= Total number of C's analysed: 71751999 Total methylated C's in CpG context: 7066746 Total methylated C's in CHG context: 307446 Total methylated C's in CHH context: 4433156 Total C to T conversions in CpG context: 2460275 Total C to T conversions in CHG context: 13930216 Total C to T conversions in CHH context: 43554160 C methylated in CpG context: 74.2% C methylated in CHG context: 2.2% C methylated in CHH context: 9.2%